Psyllid ID: psy7665

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290------
Protein Sequence
MSLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWIKGYNIEPEVIKLHTPYLVLAKARFLLPTLECQEVYHDGRFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGARLLRTLSLLSGVDPPTLIFLEHISA
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEEEcccHHHHHHHHHHHHHccccHHHHHHHHcccccccccEEEEEEEcccccccHHccccccEEEEccccccccHHHHHHHHccccccccccccccccccEEEEccccHHHHHHHHHHHcccEEEEEEcccccccccccccccEEEEccccHHHHHHHHHccHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEcccEEEEccEEEEEEEcEEEEccccccccccccccEEEEccccccccccccEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEEEEEccccccHHHHHHHHEEEcccccccHHHHccccccHHHHHEHHHHcccccccccccccccccEEEcccccccccHHHHHHcccHHHHHHccccccccEEEEEEcccHHHHHHHHHHHHHHccEEEEEEcccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEcccEEEEcccEEEEEEcEEEEEcccccccccccccEEEEccccccccccccEEEEEEEcc
Coil and Loop (DISEMBL)
mslpklggsevsTFITAEissnnageitqGYALGVMLGAYKQDFDALIGIHPTCAEAISlswikgyniepeviklHTPYLVLAKARfllptlecqevyhdgrfydyldnnfqtydydlcvigggsggISAAKEAASMNKKvalfdfvtpsqhgtvwglggtcvnvgcipkkLFHRASLlneeattsdnfgfhmkksfTWKTLVDNVQKYIRNLNNNYEKELEKnkidyfnakavfvdkhrvkfageertVSAQNFIIAvggrptypdipgarLLRTLSllsgvdpptlIFLEHISA
Flexible Loop (DISEMBL)
mslpklggseVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWIKGYNIEPEVIKLHTPYLVLAKARFLLPTLECQEVYHDGRFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNeeattsdnfgfhMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRvkfageertvsaQNFIIAVGGRPTYPDIPGARLLRTLSllsgvdpptliflehisa
Low Complexity Region (SEG)
MSLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWIKGYNIEPEVIKLHTPYLVLAKARFLLPTLECQEVYHDGRFYDYLDNNFQTYDYDLCVigggsggisaaKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRnlnnnyekeleknkIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGARLLRTLSLLSGVDPPTLIFLEHISA
Disordered region (IsUnstruct)
************TFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWIKGYNIEPEVIKLHTPYLVLAKARFLLPTLECQEVYHDGRFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGARLLRTLSLLSGVDPPTLIFLEH***
Disordered Region (DISOPRED)
********SEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLS*******************VLAKARFLLPTLECQ***************FQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGARLLRTLSLLSGVDPPTLIFLEHIS*
Disordered Region (DISEMBL)
********SEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWIKGYNIEPEVIKLHTPYLVLAKARFLLPTLECQEVYHDGRFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGARLLRTLSLLSGVDPPTLIFLEHISA
Disordered Region (DISPRO)
**L**LGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWIKGYNIEPEVIKLHTPYLVLAKARFLLPTLECQEVYHDGRFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGARLLRTLSLLSGVDPPTLIFLEHISA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWIKGYNIEPEVIKLHTPYLVLAKARFLLPTLECQEVYHDGRFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLxxxxxxxxxxxxxxxxxxxxxNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGARLLRTLSLLSGVDPPTLIFLEHISA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	296	2.2.26 [Sep-21-2011]
B9A1H3	495	Thioredoxin reductase SEP	N/A	N/A	0.550	0.329	0.520	5e-44
Q9N2I8	511	Thioredoxin reductase 2,	yes	N/A	0.510	0.295	0.522	1e-41
P91938	596	Thioredoxin reductase 1,	no	N/A	0.537	0.266	0.506	2e-40
Q9VNT5	516	Thioredoxin reductase 2,	no	N/A	0.533	0.306	0.466	1e-39
Q9JLT4	524	Thioredoxin reductase 2,	yes	N/A	0.513	0.290	0.490	1e-39
Q9Z0J5	526	Thioredoxin reductase 2,	yes	N/A	0.513	0.288	0.477	3e-38
P30635	503	Probable glutathione redu	yes	N/A	0.604	0.355	0.434	4e-36
Q16881	649	Thioredoxin reductase 1,	no	N/A	0.608	0.277	0.466	4e-34
Q9NNW7	524	Thioredoxin reductase 2,	no	N/A	0.513	0.290	0.496	3e-33
Q25861	541	Thioredoxin reductase OS=	N/A	N/A	0.564	0.308	0.445	7e-33

>sp|B9A1H3|TRXR1_EMIHU Thioredoxin reductase SEP1 OS=Emiliania huxleyi GN=SEP1 PE=1 SV=1

 Score =  178 bits (451), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 87/167 (52%), Positives = 113/167 (67%), Gaps = 4/167 (2%)

Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHR 175
           YDL VIGGGSGG++ +K AAS  KKVA+ DFV PS  GT WGLGGTCVNVGCIPKKL H+
Sbjct: 8   YDLLVIGGGSGGLACSKRAASHGKKVAVCDFVKPSPPGTTWGLGGTCVNVGCIPKKLMHQ 67

Query: 176 ASLLNEEATTSDNFGFHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAV 234
           A+LL E  T +++FG+ +      W+T+V NVQ +I++LN  Y  +L  N + Y+NA A 
Sbjct: 68  AALLGEGMTDAESFGWEVAAPKHNWETMVGNVQGHIKSLNFGYRSDLMSNGVKYYNAYAT 127

Query: 235 FVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGARLLRTLS 278
           F+D H V+     G+   ++A   +I  GGRP YPDIPGA+ L   S
Sbjct: 128 FLDPHTVEAVDKKGKVTKITASEIVICTGGRPRYPDIPGAKELGITS 174

Emiliania huxleyi (taxid: 2903)
EC: 1EC: .EC: 8EC: .EC: 1EC: .EC: 9

>sp|Q9N2I8|TRXR2_BOVIN Thioredoxin reductase 2, mitochondrial OS=Bos taurus GN=TXNRD2 PE=1 SV=2

 Score =  170 bits (431), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 81/155 (52%), Positives = 108/155 (69%), Gaps = 4/155 (2%)

Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHR 175
           YDL VIGGGSGG++ AKEAA + KKVA+ D+V PS  GT WGLGGTCVNVGCIPKKL H+
Sbjct: 28  YDLLVIGGGSGGLACAKEAAQLGKKVAVLDYVEPSPQGTRWGLGGTCVNVGCIPKKLMHQ 87

Query: 176 ASLLNEEATTSDNFGFHMKKS-FTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAV 234
           A+LL      + ++G+ + ++  +W TL D VQ ++++LN  +  +L+  K+ YFN KA 
Sbjct: 88  AALLGGMIRDAPHYGWGVAQAPHSWATLADAVQNHVKSLNWGHRIQLQDRKVKYFNVKAS 147

Query: 235 FVDKHR---VKFAGEERTVSAQNFIIAVGGRPTYP 266
           FVD H    V   GEE  +SA++ +IA GGRP YP
Sbjct: 148 FVDTHTVCGVSKGGEETLLSAEHIVIATGGRPRYP 182

Maintains thioredoxin in a reduced state. Implicated in the defenses against oxidative stress. May play a role in redox-regulated cell signaling.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|P91938|TRXR1_DROME Thioredoxin reductase 1, mitochondrial OS=Drosophila melanogaster GN=Trxr-1 PE=1 SV=2

 Score =  166 bits (421), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 83/164 (50%), Positives = 108/164 (65%), Gaps = 5/164 (3%)

Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQH-GTVWGLGGTCVNVGCIPKK 171
           +YDYDL VIGGGS G++ AKEA     +VA  DFV P+   GT WG+GGTCVNVGCIPKK
Sbjct: 112 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKK 171

Query: 172 LFHRASLLNEEATTSDNFGFHMKKSFT--WKTLVDNVQKYIRNLNNNYEKELEKNKIDYF 229
           L H+ASLL E    +  +G+++ +     W  LV +VQ +I+++N     +L   K++Y 
Sbjct: 172 LMHQASLLGEAVHEAAAYGWNVDEKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYI 231

Query: 230 NAKAVFVDKHRV--KFAGEERTVSAQNFIIAVGGRPTYPDIPGA 271
           N    FVD H +  K    ERT++AQ F+IAVGGRP YPDIPGA
Sbjct: 232 NGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGA 275

Thioredoxin system is a major player in glutathione metabolism, due to the demonstrated absence of a glutathione reductase. Functionally interacts with the Sod/Cat reactive oxidation species (ROS) defense system and thereby has a role in preadult development and life span. Lack of a glutathione reductase suggests antioxidant defense in Drosophila, and probably in related insects, differs fundamentally from that in other organisms.

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q9VNT5|TRXR2_DROME Thioredoxin reductase 2, mitochondrial OS=Drosophila melanogaster GN=Trxr-2 PE=2 SV=1

 Score =  163 bits (413), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 77/165 (46%), Positives = 109/165 (66%), Gaps = 7/165 (4%)

Query: 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLF 173
           YDYDL V+GGGS G++ AKEAA    +V  FD+V P+  GT WG+GGTCVNVGCIPKKL 
Sbjct: 31  YDYDLVVLGGGSAGLACAKEAAGCGARVLCFDYVKPTPVGTKWGIGGTCVNVGCIPKKLM 90

Query: 174 HRASLLNEEATTSDNFGFHMKKSFT---WKTLVDNVQKYIRNLNNNYEKELEKNKIDYFN 230
           H+ASLL E    +  +G+++  +     W+ LV +VQ +I+++N     +L   K++Y N
Sbjct: 91  HQASLLGEAVHEAVAYGWNVDDTNIRPDWRKLVRSVQNHIKSVNWVTRVDLRDKKVEYVN 150

Query: 231 AKAVFVDKHRVKF----AGEERTVSAQNFIIAVGGRPTYPDIPGA 271
           + A F D H +++      E R V+++  ++AVGGRP YPDIPGA
Sbjct: 151 SMATFRDSHTIEYVAMPGAEHRQVTSEYVVVAVGGRPRYPDIPGA 195

Thioredoxin system is a major player in glutathione metabolism, due to the demonstrated absence of a glutathione reductase. Functionally interacts with the Sod/Cat reactive oxidation species (ROS) defense system and thereby has a role in preadult development and life span. Lack of a glutathione reductase suggests antioxidant defense in Drosophila, and probably in related insects, differs fundamentally from that in other organisms.

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q9JLT4|TRXR2_MOUSE Thioredoxin reductase 2, mitochondrial OS=Mus musculus GN=Txnrd2 PE=1 SV=4

 Score =  163 bits (413), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 77/157 (49%), Positives = 108/157 (68%), Gaps = 5/157 (3%)

Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFH 174
            +DL VIGGGSGG++ AKEAA + KKVA+ D+V PS  GT WGLGGTCVNVGCIPKKL H
Sbjct: 39  SFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMH 98

Query: 175 RASLLNEEATTSDNFGFHMKK--SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK 232
           +A+LL      + ++G+ + +     WKT+ + VQ ++++LN  +  +L+  K+ YFN K
Sbjct: 99  QAALLGGMIRDAHHYGWEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIK 158

Query: 233 AVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYP 266
           A FVD+H V+     G+   +SA++ +IA GGRP YP
Sbjct: 159 ASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYP 195

Maintains thioredoxin in a reduced state. Implicated in the defenses against oxidative stress. May play a role in redox-regulated cell signaling.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q9Z0J5|TRXR2_RAT Thioredoxin reductase 2, mitochondrial OS=Rattus norvegicus GN=Txnrd2 PE=1 SV=3

 Score =  159 bits (401), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 75/157 (47%), Positives = 108/157 (68%), Gaps = 5/157 (3%)

Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFH 174
           ++DL VIGGGSGG++ AKEAA + +KVA+ D+V PS  GT WGLGGTCVNVGCIPKKL H
Sbjct: 41  NFDLLVIGGGSGGLACAKEAAQLGRKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMH 100

Query: 175 RASLLNEEATTSDNFGFHMKK--SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK 232
           +A+LL      + ++G+ + +     WK + + VQ ++++LN  +  +L+  K+ YFN K
Sbjct: 101 QAALLGGMIRDAQHYGWEVAQPVQHNWKAMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIK 160

Query: 233 AVFVDKHR---VKFAGEERTVSAQNFIIAVGGRPTYP 266
           A FV++H    V  AG+   +SA++ +IA GGRP YP
Sbjct: 161 ASFVNEHTVHGVDKAGKVTQLSAKHIVIATGGRPKYP 197

Maintains mitochondrial thioredoxin in a reduced state. Implicated in the defenses against oxidative stress. May play a role in redox-regulated cell signaling.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|P30635|GSHR_CAEEL Probable glutathione reductase 2 OS=Caenorhabditis elegans GN=trxr-2 PE=3 SV=2

 Score =  151 bits (382), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 83/191 (43%), Positives = 112/191 (58%), Gaps = 12/191 (6%)

Query: 111 FQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPK 170
           F +  +DL VIG GSGG+S +K AA +   VAL D V P+ HG  WG+GGTC NVGCIPK
Sbjct: 16  FSSNKFDLIVIGAGSGGLSCSKRAADLGANVALIDAVEPTPHGHSWGIGGTCANVGCIPK 75

Query: 171 KLFHRASLLNEEATTSDNFGF----HMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKI 226
           KL H+A+++ +E   +D +G+      K    W  L  NV   ++  N  Y  +L + KI
Sbjct: 76  KLMHQAAIVGKELKHADKYGWNGIDQEKIKHDWNVLSKNVNDRVKANNWIYRVQLNQKKI 135

Query: 227 DYFNAKAVFVDKHRVKFAGEERT-----VSAQNFIIAVGGRPTYPDIPGARLLRT---LS 278
           +YFNA A FVDK ++   G ++      +SA N +I+ G RP YP+IPGA L  T   L 
Sbjct: 136 NYFNAYAEFVDKDKIVITGTDKNKTKNFLSAPNVVISTGLRPKYPNIPGAELGITSDDLF 195

Query: 279 LLSGVDPPTLI 289
            L+ V   TLI
Sbjct: 196 TLASVPGKTLI 206

Maintains high levels of reduced glutathione in the cytosol.

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

>sp|Q16881|TRXR1_HUMAN Thioredoxin reductase 1, cytoplasmic OS=Homo sapiens GN=TXNRD1 PE=1 SV=3

 Score =  145 bits (365), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 90/193 (46%), Positives = 122/193 (63%), Gaps = 13/193 (6%)

Query: 90  PTLECQEVYHDGRFYDYLDNNF-----QTYDYDLCVIGGGSGGISAAKEAASMNKKVALF 144
           PTL+    Y +GR    L  N      ++YDYDL +IGGGSGG++AAKEAA   KKV + 
Sbjct: 135 PTLK---AYQEGRLQKLLKMNGPEDLPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVL 191

Query: 145 DFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFT--WKTL 202
           DFVTP+  GT WGLGGTCVNVGCIPKKL H+A+LL +    S N+G+ ++++    W  +
Sbjct: 192 DFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRM 251

Query: 203 VDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAV 259
           ++ VQ +I +LN  Y   L + K+ Y NA   F+  HR+K     G+E+  SA+ F+IA 
Sbjct: 252 IEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIAT 311

Query: 260 GGRPTYPDIPGAR 272
           G RP Y  IPG +
Sbjct: 312 GERPRYLGIPGDK 324

Isoform 1 may possess glutaredoxin activity as well as thioredoxin reductase activity and induces actin and tubulin polymerization, leading to formation of cell membrane protrusions. Isoform 4 enhances the transcriptional activity of estrogen receptors alpha and beta while isoform 5 enhances the transcriptional activity of the beta receptor only. Isoform 5 also mediates cell death induced by a combination of interferon-beta and retinoic acid.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q9NNW7|TRXR2_HUMAN Thioredoxin reductase 2, mitochondrial OS=Homo sapiens GN=TXNRD2 PE=1 SV=3

 Score =  142 bits (358), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 78/157 (49%), Positives = 107/157 (68%), Gaps = 5/157 (3%)

Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFH 174
           DYDL V+GGGSGG++ AKEAA + +KVA+ D+V PS  GT WGLGGTCVNVGCIPKKL H
Sbjct: 39  DYDLLVVGGGSGGLACAKEAAQLGRKVAVVDYVEPSPQGTRWGLGGTCVNVGCIPKKLMH 98

Query: 175 RASLLNEEATTSDNFGFHMKKSFT--WKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK 232
           +A+LL      + N+G+ + +     W+ + + VQ ++++LN  +  +L+  K+ YFN K
Sbjct: 99  QAALLGGLIQDAPNYGWEVAQPVPHDWRKMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIK 158

Query: 233 AVFVDKHR---VKFAGEERTVSAQNFIIAVGGRPTYP 266
           A FVD+H    V   G+E  +SA + IIA GGRP YP
Sbjct: 159 ASFVDEHTVCGVAKGGKEILLSADHIIIATGGRPRYP 195

Maintains thioredoxin in a reduced state. Implicated in the defenses against oxidative stress. May play a role in redox-regulated cell signaling.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q25861|TRXR_PLAF5 Thioredoxin reductase OS=Plasmodium falciparum (isolate FCH-5) GN=TR PE=1 SV=1

 Score =  141 bits (355), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 78/175 (44%), Positives = 102/175 (58%), Gaps = 8/175 (4%)

Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
            TYDYD  VIGGG GG+++AKEAA+   +V LFD+V PS  GT WG+GGTCVNVGC+PKK
Sbjct: 38  HTYDYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKK 97

Query: 172 LFHRASLLNEE-ATTSDNFGFHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYF 229
           L H A  +       S  +G+        WK LV  VQ +IR+LN +Y   L  +K+ Y 
Sbjct: 98  LMHYAGHMGSIFKLDSKAYGWKFDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYI 157

Query: 230 NAKAVFVDKHRVKF-----AGEERTVSAQNFIIAVGGRPTYP-DIPGARLLRTLS 278
           N  A   DK+ V +       +E TV+ +  +IA G RP  P D+ GA+ L   S
Sbjct: 158 NGLAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGCRPHIPDDVEGAKELSITS 212

Plasmodium falciparum (isolate FCH-5) (taxid: 132416)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
326436016	495	thioredoxin reductase 1 [Salpingoeca sp.	0.540	0.323	0.539	6e-45
449664532	653	PREDICTED: thioredoxin reductase 3-like	0.608	0.275	0.459	8e-44
328702950	492	PREDICTED: thioredoxin reductase 1, mito	0.537	0.323	0.512	2e-42
294863157	495	RecName: Full=Thioredoxin reductase SEP1	0.550	0.329	0.520	3e-42
390341947	525	PREDICTED: thioredoxin reductase 2, mito	0.645	0.363	0.451	1e-41
442751729	594	Putative pyridine nucleotide-disulfide o	0.645	0.321	0.489	2e-41
428183421	525	hypothetical protein GUITHDRAFT_65355 [G	0.597	0.337	0.489	3e-41
390410846	593	thioredoxin reductase [Acropora millepor	0.645	0.322	0.458	3e-41
195131915	601	GI15898 [Drosophila mojavensis] gi|19390	0.533	0.262	0.518	4e-41
346470991	592	hypothetical protein [Amblyomma maculatu	0.645	0.322	0.484	5e-41

>gi|326436016|gb|EGD81586.1| thioredoxin reductase 1 [Salpingoeca sp. ATCC 50818]

 Score =  187 bits (474), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 89/165 (53%), Positives = 114/165 (69%), Gaps = 5/165 (3%)

Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKL 172
           T+DYDL VIGGGSGG++ +K AAS   KVA+ DFVTPS HGT WGLGGTCVNVGCIPKKL
Sbjct: 14  TFDYDLVVIGGGSGGLACSKRAASHGAKVAVLDFVTPSPHGTTWGLGGTCVNVGCIPKKL 73

Query: 173 FHRASLLNEEATTSDNFGFHMKK--SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFN 230
            H+A+LL      + +FG+ +++     W+TLV  V  +IR+LN  Y   L  N +DY N
Sbjct: 74  MHQAALLGHAIEDAKSFGWEVERPEKPKWETLVAEVNNHIRSLNWGYRVSLRDNNVDYKN 133

Query: 231 AKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGAR 272
           A+   VD H +K     GEE T++ +N ++A+GGRP YPDIPGA 
Sbjct: 134 ARGSLVDAHTLKLVNKRGEESTLTTKNVVLAMGGRPRYPDIPGAE 178

Source: Salpingoeca sp. ATCC 50818

Species: Salpingoeca sp. ATCC 50818

Genus: Salpingoeca

Family: Salpingoecidae

Order: Choanoflagellida

Superkingdom: Eukaryota

>gi|449664532|ref|XP_002154390.2| PREDICTED: thioredoxin reductase 3-like [Hydra magnipapillata]

 Score =  183 bits (464), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 85/185 (45%), Positives = 126/185 (68%), Gaps = 5/185 (2%)

Query: 93  ECQEVYHDGRFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQH 152
           + ++ Y +G        +   YD+DL VIGGGSGG++ +KEAA +  KVA+ DFV PS  
Sbjct: 146 DTEKAYQNGSLQKLWQGDAVKYDFDLFVIGGGSGGLACSKEAADLGAKVAVADFVVPSPA 205

Query: 153 GTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFT--WKTLVDNVQKYI 210
           G+ WGLGGTCVNVGCIPKKL H+A+LL E    S ++G++++++ +  W  +VD +Q++I
Sbjct: 206 GSTWGLGGTCVNVGCIPKKLMHQAALLGEAIHDSRHYGWNIEENISHDWAKMVDAIQQHI 265

Query: 211 RNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPD 267
           R+LN  Y+  L +  + Y+N  A F+D H ++    +G+  TV+A  F++A GGRPTYPD
Sbjct: 266 RSLNWGYKVNLRQKNVKYYNMYATFLDNHTLQLTDKSGKVETVTADKFVLATGGRPTYPD 325

Query: 268 IPGAR 272
           IPGA+
Sbjct: 326 IPGAK 330

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|328702950|ref|XP_001942650.2| PREDICTED: thioredoxin reductase 1, mitochondrial-like [Acyrthosiphon pisum]

 Score =  178 bits (452), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 84/164 (51%), Positives = 115/164 (70%), Gaps = 5/164 (3%)

Query: 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLF 173
           YD+DL VIGGGSGG++ AKEA+S  K+V + DFV PS+ GT WG+GGTCVNVGCIPKKL 
Sbjct: 10  YDFDLLVIGGGSGGLACAKEASSFGKQVVVLDFVIPSEKGTTWGIGGTCVNVGCIPKKLM 69

Query: 174 HRASLLNEEATTSDNFGFHMKK--SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA 231
           H+ASLL E    + ++G+++    SF W++LV+ VQ +I+++N     +L   KI+Y N 
Sbjct: 70  HQASLLGESIQEARSYGWNIPDPISFNWESLVEAVQNHIKSVNWVTRVQLRDKKIEYVNG 129

Query: 232 KAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGAR 272
             VF D H V      G+ER ++A++ +IAVGGRP YPD PG +
Sbjct: 130 HGVFEDAHTVIAKMKNGKERRITAKDIVIAVGGRPRYPDFPGCK 173

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|294863157|sp|B9A1H3.1|TRXR1_EMIHU RecName: Full=Thioredoxin reductase SEP1; Short=EhSEP1 gi|222425028|dbj|BAH20464.1| thioredoxin reductase [Emiliania huxleyi]

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 87/167 (52%), Positives = 113/167 (67%), Gaps = 4/167 (2%)

Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHR 175
           YDL VIGGGSGG++ +K AAS  KKVA+ DFV PS  GT WGLGGTCVNVGCIPKKL H+
Sbjct: 8   YDLLVIGGGSGGLACSKRAASHGKKVAVCDFVKPSPPGTTWGLGGTCVNVGCIPKKLMHQ 67

Query: 176 ASLLNEEATTSDNFGFHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAV 234
           A+LL E  T +++FG+ +      W+T+V NVQ +I++LN  Y  +L  N + Y+NA A 
Sbjct: 68  AALLGEGMTDAESFGWEVAAPKHNWETMVGNVQGHIKSLNFGYRSDLMSNGVKYYNAYAT 127

Query: 235 FVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGARLLRTLS 278
           F+D H V+     G+   ++A   +I  GGRP YPDIPGA+ L   S
Sbjct: 128 FLDPHTVEAVDKKGKVTKITASEIVICTGGRPRYPDIPGAKELGITS 174

Source: Emiliania huxleyi

Species: Emiliania huxleyi

Genus: Emiliania

Family: Noelaerhabdaceae

Order: Isochrysidales

Superkingdom: Eukaryota

>gi|390341947|ref|XP_797733.3| PREDICTED: thioredoxin reductase 2, mitochondrial-like [Strongylocentrotus purpuratus]

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 89/197 (45%), Positives = 121/197 (61%), Gaps = 6/197 (3%)

Query: 81  VLAKARFLLPTLECQEVYHDGRFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKK 140
           VL     LL +   Q V    R+     +   +YDYDL VIGGGSGG++ AKEAA  +KK
Sbjct: 11  VLNSRNALLKSKYSQRVRVLDRWLSCSRSLGSSYDYDLAVIGGGSGGLACAKEAAGFDKK 70

Query: 141 VALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKK--SFT 198
           V + D+V PS  GT WGLGGTCVNVGCIPKKL H ASLL E    + ++G+ +      +
Sbjct: 71  VIVLDYVDPSPQGTKWGLGGTCVNVGCIPKKLLHHASLLRESMHDAKHYGWQVPDDIGLS 130

Query: 199 WKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFA---GEERTVSAQNF 255
           W TL+  +Q ++++LN  +  +L+   ++Y N K  F+D+H VK     G+E   SA N 
Sbjct: 131 WSTLIGGIQGHVKSLNWGHRVQLQDKNVEYVNGKGSFIDEHTVKVKMKDGKETQFSAANI 190

Query: 256 IIAVGGRPTYPD-IPGA 271
           ++A GGRP YPD +PGA
Sbjct: 191 VLATGGRPKYPDKVPGA 207

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|442751729|gb|JAA68024.1| Putative pyridine nucleotide-disulfide oxidoreductase [Ixodes ricinus]

 Score =  175 bits (444), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 97/198 (48%), Positives = 127/198 (64%), Gaps = 7/198 (3%)

Query: 81  VLAKARFLLPTLECQEVYHDGRFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKK 140
           V     FL  + +    Y  G   + L      YDYDL VIGGGSGG++A+KEAA + KK
Sbjct: 78  VFVGGEFLGGSEDTAVAYAKGNLGNLL-AGLSDYDYDLVVIGGGSGGLAASKEAAKLGKK 136

Query: 141 VALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKK---SF 197
           VA+ DFV PS  GT WGLGGTCVNVGCIPKKL H+A+LL +    +  FG+++      F
Sbjct: 137 VAVCDFVKPSPQGTSWGLGGTCVNVGCIPKKLMHQAALLGQGIQDARKFGWNIPDGAVQF 196

Query: 198 TWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFA---GEERTVSAQN 254
            W+ +  NV+ YI +LN  Y  +L +NK+ Y NA A FVD H+VK     G+E+ ++A +
Sbjct: 197 QWEVMCSNVRDYISSLNWKYRVQLRENKVQYLNAFAEFVDLHKVKVTDKKGKEKFITASD 256

Query: 255 FIIAVGGRPTYPDIPGAR 272
           FI+A+G RP YPDIPGAR
Sbjct: 257 FILAMGERPKYPDIPGAR 274

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|428183421|gb|EKX52279.1| hypothetical protein GUITHDRAFT_65355 [Guillardia theta CCMP2712]

 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 91/186 (48%), Positives = 120/186 (64%), Gaps = 9/186 (4%)

Query: 110 NFQT--YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGC 167
           NF +  Y+YDL VIGGGSGG++ +K+AAS   KVA+ D+V P+  GT WGLGGTCVNVGC
Sbjct: 25  NFASHPYEYDLIVIGGGSGGLACSKQAASHGAKVAVCDYVDPTPKGTSWGLGGTCVNVGC 84

Query: 168 IPKKLFHRASLLNEEATTSDNFGFHMKKSF--TWKTLVDNVQKYIRNLNNNYEKELEKNK 225
           IPKKL HRA L++E    + +FGF        +W+TLVDNVQ YI +LN  Y  EL    
Sbjct: 85  IPKKLMHRAGLIHEAILDAKSFGFACPDDVQHSWETLVDNVQNYIGSLNFGYRNELRSAN 144

Query: 226 IDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGAR--LLRTLSLL 280
           ++Y+N+KA F+D H V+     G     +A  F+I+VGGRP Y D+ G R   + +  L 
Sbjct: 145 VEYWNSKARFIDAHTVELRDAQGRIEKKTAAAFVISVGGRPKYLDVEGDRECCVTSDDLF 204

Query: 281 SGVDPP 286
           S  +PP
Sbjct: 205 SLKEPP 210

Source: Guillardia theta CCMP2712

Species: Guillardia theta

Genus: Guillardia

Family: Geminigeraceae

Order: Pyrenomonadales

Class: Cryptophyta

Superkingdom: Eukaryota

>gi|390410846|gb|AFI99106.2| thioredoxin reductase [Acropora millepora]

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 93/203 (45%), Positives = 121/203 (59%), Gaps = 12/203 (5%)

Query: 96  EVYHDGRFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTV 155
           +++ DG+  + +    + Y YDL VIGGGSGG++ +KEAA++ KKVA+ DFV PS  GT 
Sbjct: 87  KLHQDGKLMNLIVPPTEEYTYDLIVIGGGSGGLACSKEAANLGKKVAVLDFVKPSPIGTT 146

Query: 156 WGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFG--FHMKKSFTWKTLVDNVQKYIRNL 213
           WGLGGTCVNVGCIPKKL H+A+LL      +  FG  F  K    W T+ +NVQ +I +L
Sbjct: 147 WGLGGTCVNVGCIPKKLMHQAALLGHSMEDARMFGWEFDQKVEHKWATMRENVQNHIGSL 206

Query: 214 NNNYEKELEKNKIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPG 270
           N  Y  EL   K+ Y NA    V+ H VK     G    ++AQN ++A G RP YPDIPG
Sbjct: 207 NWAYRVELRDKKVLYKNATGTLVNAHTVKAVDKRGRVTEMTAQNIVLATGLRPRYPDIPG 266

Query: 271 ARLLRTLSLLSGVDPPTLIFLEH 293
           A+         G+    L  LEH
Sbjct: 267 AKEY-------GITSDDLFSLEH 282

Source: Acropora millepora

Species: Acropora millepora

Genus: Acropora

Family: Acroporidae

Order: Scleractinia

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|195131915|ref|XP_002010389.1| GI15898 [Drosophila mojavensis] gi|193908839|gb|EDW07706.1| GI15898 [Drosophila mojavensis]

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 84/162 (51%), Positives = 108/162 (66%), Gaps = 4/162 (2%)

Query: 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLF 173
           YDYDL VIGGGSGG+S AKEA +   +VA  DFV P+  GT WG+GGTCVNVGCIPKKL 
Sbjct: 119 YDYDLVVIGGGSGGLSCAKEAVAHGARVACLDFVKPTPLGTKWGVGGTCVNVGCIPKKLM 178

Query: 174 HRASLLNEEATTSDNFGFHMKKSFT--WKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA 231
           H+A+LL E    +  +G+++       W  LV  VQ +I+++N     +L   K++Y N 
Sbjct: 179 HQAALLGEAVHEAAAYGWNVDDKIKPDWSKLVTAVQNHIKSVNWVTRVDLRDKKVEYING 238

Query: 232 KAVFVDKHRV--KFAGEERTVSAQNFIIAVGGRPTYPDIPGA 271
              FVD H +  K  G ERT++AQ F+IAVGGRP YP+IPGA
Sbjct: 239 LGSFVDSHTISAKLKGGERTITAQTFVIAVGGRPRYPNIPGA 280

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346470991|gb|AEO35340.1| hypothetical protein [Amblyomma maculatum]

 Score =  174 bits (441), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 95/196 (48%), Positives = 130/196 (66%), Gaps = 5/196 (2%)

Query: 81  VLAKARFLLPTLECQEVYHDGRFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKK 140
           V     FL  + +    +  G     L N+  +YDYDL VIGGGSGG++A+KEAA + KK
Sbjct: 78  VFVGGEFLGGSEDTATAHQTGALGQLLVNDV-SYDYDLVVIGGGSGGLAASKEAARLGKK 136

Query: 141 VALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKK-SFTW 199
           VA+ DFV P+  GT WGLGGTCVNVGCIPKKL HRA+LL +    S +FG+ ++   F W
Sbjct: 137 VAVCDFVKPTPKGTSWGLGGTCVNVGCIPKKLMHRAALLGQGILDSKSFGWEVQDVHFKW 196

Query: 200 KTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFI 256
           +T+  NV+ YI +LN  Y   L +  +DY NA A FVD+H++K     G E+ +++++F+
Sbjct: 197 ETMRGNVRDYIASLNWKYRVSLREAGVDYINAYAQFVDRHKLKLTDKKGGEKFITSRDFL 256

Query: 257 IAVGGRPTYPDIPGAR 272
           +A+G RP YPDIPGAR
Sbjct: 257 LAMGERPRYPDIPGAR 272

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	296
FB|FBgn0020653	596	Trxr-1 "Thioredoxin reductase-	0.537	0.266	0.445	2.8e-31
UNIPROTKB|F1PBX0	655	TXNRD1 "Uncharacterized protei	0.608	0.274	0.404	3.2e-31
ZFIN|ZDB-GENE-040914-66	503	si:ch1073-179p4.3 "si:ch1073-1	0.533	0.314	0.412	8.7e-31
UNIPROTKB|F1MN10	506	F1MN10 "Uncharacterized protei	0.527	0.308	0.447	1.6e-30
UNIPROTKB|Q9N2I8	511	TXNRD2 "Thioredoxin reductase	0.527	0.305	0.447	1.8e-30
UNIPROTKB|E2QRB9	541	TXNRD1 "Thioredoxin reductase	0.591	0.323	0.4	2.1e-30
UNIPROTKB|B7Z2S5	547	TXNRD1 "cDNA FLJ56075, highly	0.601	0.325	0.397	3e-30
UNIPROTKB|G1K1Q2	497	TXNRD1 "Thioredoxin reductase	0.537	0.319	0.420	3.9e-30
UNIPROTKB|E7ESI6	581	TXNRD1 "Thioredoxin reductase	0.601	0.306	0.397	4.1e-30
UNIPROTKB|O62768	499	TXNRD1 "Thioredoxin reductase	0.537	0.318	0.420	4.1e-30

FB|FBgn0020653 Trxr-1 "Thioredoxin reductase-1" [Drosophila melanogaster (taxid:7227)]

 Score = 349 (127.9 bits), Expect = 2.8e-31, P = 2.8e-31
 Identities = 73/164 (44%), Positives = 93/164 (56%)

Query:   113 TYDYDLCVXXXXXXXXXXXKEAASMNKKVALFDFVTPSQH-GTVWGLGGTCVNVGCIPKK 171
             +YDYDL V           KEA     +VA  DFV P+   GT WG+GGTCVNVGCIPKK
Sbjct:   112 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKK 171

Query:   172 LFHRASLLNEEATTSDNFGFHMKKSFT--WKTLVDNVQKYIRXXXXXXXXXXXXXXIDYF 229
             L H+ASLL E    +  +G+++ +     W  LV +VQ +I+              ++Y 
Sbjct:   172 LMHQASLLGEAVHEAAAYGWNVDEKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYI 231

Query:   230 NAKAVFVDKHRV--KFAGEERTVSAQNFIIAVGGRPTYPDIPGA 271
             N    FVD H +  K    ERT++AQ F+IAVGGRP YPDIPGA
Sbjct:   232 NGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGA 275

GO:0001666 "response to hypoxia" evidence=IMP

GO:0004362 "glutathione-disulfide reductase activity" evidence=IDA;NAS;IMP

GO:0008340 "determination of adult lifespan" evidence=IMP;TAS

GO:0005737 "cytoplasm" evidence=IDA;NAS

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=ISS;IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0045454 "cell redox homeostasis" evidence=IEA;IC

GO:0005739 "mitochondrion" evidence=IDA

GO:0016209 "antioxidant activity" evidence=NAS;IDA

GO:0050661 "NADP binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0006974 "response to DNA damage stimulus" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|F1PBX0 TXNRD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 350 (128.3 bits), Expect = 3.2e-31, P = 3.2e-31
 Identities = 78/193 (40%), Positives = 104/193 (53%)

Query:    90 PTLECQEVYHDGRFYDYLDNNF-----QTYDYDLCVXXXXXXXXXXXKEAASMNKKVALF 144
             PTL+    Y +GR  + L+ N      + YDYDL +           KEAA  NKK+ + 
Sbjct:   141 PTLKA---YQEGRLQNLLNMNGSEDLPEVYDYDLIIIGGGSGGLAAAKEAARYNKKIMVL 197

Query:   145 DFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFT--WKTL 202
             DFVTP+  GT WGLGGTCVNVGCIPKKL H+A+LL +    S N+G+  +++    W  +
Sbjct:   198 DFVTPTPRGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWSTEETVKHDWDKM 257

Query:   203 VDNVQKYIRXXXXXXXXXXXXXXIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAV 259
              + VQ +I               + Y NA   FV  HR+K     G+E+  SA+ F+IA 
Sbjct:   258 TEAVQNHIGSLNWGYRVALREKKVTYENAYGQFVGPHRIKATNNKGKEKIYSAERFLIAT 317

Query:   260 GGRPTYPDIPGAR 272
             G RP Y  IPG R
Sbjct:   318 GERPRYLGIPGDR 330

GO:0008283 "cell proliferation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0001707 "mesoderm formation" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

ZFIN|ZDB-GENE-040914-66 si:ch1073-179p4.3 "si:ch1073-179p4.3" [Danio rerio (taxid:7955)]

 Score = 340 (124.7 bits), Expect = 8.7e-31, P = 8.7e-31
 Identities = 68/165 (41%), Positives = 95/165 (57%)

Query:   114 YDYDLCVXXXXXXXXXXXKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLF 173
             +DYDL V           KEAA + +KVA+ D+V PS  GT WGLGGTCVNVGCIPKKL 
Sbjct:    18 FDYDLVVIGGGSGGLACSKEAAQLGQKVAVLDYVEPSLKGTKWGLGGTCVNVGCIPKKLM 77

Query:   174 HRASLLNEEATTSDNFGFHMKKSFT--WKTLVDNVQKYIRXXXXXXXXXXXXXXIDYFNA 231
             H+A+LL      +  +G+ + ++ +  W T+ + VQ ++R              + Y N 
Sbjct:    78 HQAALLGTAVKDARKYGWQIPETLSHDWPTMAEAVQNHVRSLNWGHRVQLQDKKVKYLNM 137

Query:   232 KAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPD--IPGA 271
             K   +DKH V+     G+E TV+A+N ++A GGRP YP   +PGA
Sbjct:   138 KGTLLDKHTVRAVNAQGKEMTVTARNILLATGGRPKYPTHVVPGA 182

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016668 "oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1MN10 F1MN10 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 338 (124.0 bits), Expect = 1.6e-30, P = 1.6e-30
 Identities = 72/161 (44%), Positives = 93/161 (57%)

Query:   116 YDLCVXXXXXXXXXXXKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHR 175
             YDL V           KEAA + KKVA+ D+V PS  GT WGLGGTCVNVGCIPKKL H+
Sbjct:    27 YDLLVIGGGSGGLACAKEAAQLGKKVAVLDYVEPSPQGTRWGLGGTCVNVGCIPKKLMHQ 86

Query:   176 ASLLNEEATTSDNFGFHMKKS-FTWKTLVDNVQKYIRXXXXXXXXXXXXXXIDYFNAKAV 234
             A+LL      + ++G+ + ++  +W TL D VQ +++              + YFN KA 
Sbjct:    87 AALLGGMIRDAPHYGWGVAQAPHSWATLADAVQNHVKSLNWGHRIQLQDRKVKYFNVKAS 146

Query:   235 FVDKHRV---KFAGEERTVSAQNFIIAVGGRPTYPD-IPGA 271
             FVD H V      GEE  +SA++ +IA GGRP YP  I GA
Sbjct:   147 FVDTHTVCGVSKGGEETLLSAEHIVIATGGRPRYPTHIEGA 187

GO:0030097 "hemopoiesis" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

UNIPROTKB|Q9N2I8 TXNRD2 "Thioredoxin reductase 2, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 338 (124.0 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 72/161 (44%), Positives = 93/161 (57%)

Query:   116 YDLCVXXXXXXXXXXXKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHR 175
             YDL V           KEAA + KKVA+ D+V PS  GT WGLGGTCVNVGCIPKKL H+
Sbjct:    28 YDLLVIGGGSGGLACAKEAAQLGKKVAVLDYVEPSPQGTRWGLGGTCVNVGCIPKKLMHQ 87

Query:   176 ASLLNEEATTSDNFGFHMKKS-FTWKTLVDNVQKYIRXXXXXXXXXXXXXXIDYFNAKAV 234
             A+LL      + ++G+ + ++  +W TL D VQ +++              + YFN KA 
Sbjct:    88 AALLGGMIRDAPHYGWGVAQAPHSWATLADAVQNHVKSLNWGHRIQLQDRKVKYFNVKAS 147

Query:   235 FVDKHRV---KFAGEERTVSAQNFIIAVGGRPTYPD-IPGA 271
             FVD H V      GEE  +SA++ +IA GGRP YP  I GA
Sbjct:   148 FVDTHTVCGVSKGGEETLLSAEHIVIATGGRPRYPTHIEGA 188

GO:0005739 "mitochondrion" evidence=IDA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IDA

GO:0000305 "response to oxygen radical" evidence=TAS

GO:0050661 "NADP binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|E2QRB9 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 339 (124.4 bits), Expect = 2.1e-30, P = 2.1e-30
 Identities = 74/185 (40%), Positives = 100/185 (54%)

Query:    96 EVYHDGRFYDYLDNNF-----QTYDYDLCVXXXXXXXXXXXKEAASMNKKVALFDFVTPS 150
             E Y +GR    L  N      ++YDYDL +           KEAA   KKV + DFVTP+
Sbjct:    32 EAYQEGRLQKLLKMNGPEDLPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPT 91

Query:   151 QHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFT--WKTLVDNVQK 208
               GT WGLGGTCVNVGCIPKKL H+A+LL +    S N+G+ ++++    W  +++ VQ 
Sbjct:    92 PLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQN 151

Query:   209 YIRXXXXXXXXXXXXXXIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTY 265
             +I               + Y NA   F+  HR+K     G+E+  SA+ F+IA G RP Y
Sbjct:   152 HIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRY 211

Query:   266 PDIPG 270
               IPG
Sbjct:   212 LGIPG 216

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

UNIPROTKB|B7Z2S5 TXNRD1 "cDNA FLJ56075, highly similar to Thioredoxin reductase 1, cytoplasmic (EC 1.8.1.9)" [Homo sapiens (taxid:9606)]

 Score = 338 (124.0 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 76/191 (39%), Positives = 103/191 (53%)

Query:    90 PTLECQEVYHDGRFYDYLDNNF-----QTYDYDLCVXXXXXXXXXXXKEAASMNKKVALF 144
             PTL+    Y +GR    L  N      ++YDYDL +           KEAA   KKV + 
Sbjct:    35 PTLKA---YQEGRLQKLLKMNGPEDLPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVL 91

Query:   145 DFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFT--WKTL 202
             DFVTP+  GT WGLGGTCVNVGCIPKKL H+A+LL +    S N+G+ ++++    W  +
Sbjct:    92 DFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRM 151

Query:   203 VDNVQKYIRXXXXXXXXXXXXXXIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAV 259
             ++ VQ +I               + Y NA   F+  HR+K     G+E+  SA+ F+IA 
Sbjct:   152 IEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIAT 211

Query:   260 GGRPTYPDIPG 270
             G RP Y  IPG
Sbjct:   212 GERPRYLGIPG 222

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|G1K1Q2 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" [Bos taurus (taxid:9913)]

 Score = 334 (122.6 bits), Expect = 3.9e-30, P = 3.9e-30
 Identities = 69/164 (42%), Positives = 94/164 (57%)

Query:   112 QTYDYDLCVXXXXXXXXXXXKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
             + YDYDL +           KEAA  +KKV + DFVTP+  GT WGLGGTCVNVGCIPKK
Sbjct:     9 EPYDYDLIIIGGGSGGLAAAKEAAKYDKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKK 68

Query:   172 LFHRASLLNEEATTSDNFGFHMKKSFT--WKTLVDNVQKYIRXXXXXXXXXXXXXXIDYF 229
             L H+A+LL +    S N+G++++++    W+ + + VQ +I               + Y 
Sbjct:    69 LMHQAALLGQALRDSRNYGWNVEETVKHDWERMTEAVQNHIGSLNWGYRVALREKKVTYE 128

Query:   230 NAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPG 270
             NA   FV  HR+K     G+E+  SA+ F+IA G RP Y  IPG
Sbjct:   129 NAYGEFVGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPG 172

GO:0050661 "NADP binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

UNIPROTKB|E7ESI6 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 338 (124.0 bits), Expect = 4.1e-30, P = 4.1e-30
 Identities = 76/191 (39%), Positives = 103/191 (53%)

Query:    90 PTLECQEVYHDGRFYDYLDNNF-----QTYDYDLCVXXXXXXXXXXXKEAASMNKKVALF 144
             PTL+    Y +GR    L  N      ++YDYDL +           KEAA   KKV + 
Sbjct:    84 PTLKA---YQEGRLQKLLKMNGPEDLPKSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVL 140

Query:   145 DFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFT--WKTL 202
             DFVTP+  GT WGLGGTCVNVGCIPKKL H+A+LL +    S N+G+ ++++    W  +
Sbjct:   141 DFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKVEETVKHDWDRM 200

Query:   203 VDNVQKYIRXXXXXXXXXXXXXXIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAV 259
             ++ VQ +I               + Y NA   F+  HR+K     G+E+  SA+ F+IA 
Sbjct:   201 IEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIAT 260

Query:   260 GGRPTYPDIPG 270
             G RP Y  IPG
Sbjct:   261 GERPRYLGIPG 271

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|O62768 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" [Bos taurus (taxid:9913)]

 Score = 334 (122.6 bits), Expect = 4.1e-30, P = 4.1e-30
 Identities = 69/164 (42%), Positives = 94/164 (57%)

Query:   112 QTYDYDLCVXXXXXXXXXXXKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
             + YDYDL +           KEAA  +KKV + DFVTP+  GT WGLGGTCVNVGCIPKK
Sbjct:     9 EPYDYDLIIIGGGSGGLAAAKEAAKYDKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKK 68

Query:   172 LFHRASLLNEEATTSDNFGFHMKKSFT--WKTLVDNVQKYIRXXXXXXXXXXXXXXIDYF 229
             L H+A+LL +    S N+G++++++    W+ + + VQ +I               + Y 
Sbjct:    69 LMHQAALLGQALRDSRNYGWNVEETVKHDWERMTEAVQNHIGSLNWGYRVALREKKVTYE 128

Query:   230 NAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPG 270
             NA   FV  HR+K     G+E+  SA+ F+IA G RP Y  IPG
Sbjct:   129 NAYGEFVGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPG 172

GO:0005737 "cytoplasm" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9N2I8	TRXR2_BOVIN	1, ., 8, ., 1, ., 9	0.5225	0.5101	0.2954	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.8.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	296
TIGR01438	484	TIGR01438, TGR, thioredoxin and glutathione reduct	7e-62
PTZ00052	499	PTZ00052, PTZ00052, thioredoxin reductase; Provisi	8e-55
PRK06116	450	PRK06116, PRK06116, glutathione reductase; Validat	2e-53
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	4e-40
TIGR01424	446	TIGR01424, gluta_reduc_2, glutathione-disulfide re	8e-35
TIGR01421	450	TIGR01421, gluta_reduc_1, glutathione-disulfide re	3e-33
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	3e-30
PTZ00058	561	PTZ00058, PTZ00058, glutathione reductase; Provisi	2e-29
TIGR02053	463	TIGR02053, MerA, mercuric reductase	9e-28
PLN02507	499	PLN02507, PLN02507, glutathione reductase	2e-27
TIGR01350	460	TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog	2e-26
PLN02546	558	PLN02546, PLN02546, glutathione reductase	4e-26
PRK06416	462	PRK06416, PRK06416, dihydrolipoamide dehydrogenase	6e-26
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	5e-24
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	2e-22
PRK05249	461	PRK05249, PRK05249, soluble pyridine nucleotide tr	3e-22
TIGR01423	486	TIGR01423, trypano_reduc, trypanothione-disulfide	8e-20
PRK06327	475	PRK06327, PRK06327, dihydrolipoamide dehydrogenase	2e-19
PRK07846	451	PRK07846, PRK07846, mycothione reductase; Reviewed	9e-19
PRK06467	471	PRK06467, PRK06467, dihydrolipoamide dehydrogenase	3e-17
PRK06912	458	PRK06912, acoL, dihydrolipoamide dehydrogenase; Va	4e-17
PRK06115	466	PRK06115, PRK06115, dihydrolipoamide dehydrogenase	1e-15
PRK05976	472	PRK05976, PRK05976, dihydrolipoamide dehydrogenase	3e-15
TIGR03452	452	TIGR03452, mycothione_red, mycothione reductase	1e-14
PRK14727	479	PRK14727, PRK14727, putative mercuric reductase; P	1e-14
PRK07818	466	PRK07818, PRK07818, dihydrolipoamide dehydrogenase	3e-14
PRK14694	468	PRK14694, PRK14694, putative mercuric reductase; P	7e-14
PRK07251	438	PRK07251, PRK07251, pyridine nucleotide-disulfide	1e-12
PRK13748	561	PRK13748, PRK13748, putative mercuric reductase; P	2e-11
PTZ00153	659	PTZ00153, PTZ00153, lipoamide dehydrogenase; Provi	2e-10
PRK08010	441	PRK08010, PRK08010, pyridine nucleotide-disulfide	4e-10
PTZ00052	499	PTZ00052, PTZ00052, thioredoxin reductase; Provisi	7e-10
TIGR01438	484	TIGR01438, TGR, thioredoxin and glutathione reduct	3e-08
PRK06116	450	PRK06116, PRK06116, glutathione reductase; Validat	9e-08
PLN02546	558	PLN02546, PLN02546, glutathione reductase	1e-06
TIGR01424	446	TIGR01424, gluta_reduc_2, glutathione-disulfide re	2e-06
pfam02852	110	pfam02852, Pyr_redox_dim, Pyridine nucleotide-disu	2e-06
pfam12831	415	pfam12831, FAD_oxidored, FAD dependent oxidoreduct	5e-06
PTZ00058	561	PTZ00058, PTZ00058, glutathione reductase; Provisi	2e-05
COG1053	562	COG1053, SdhA, Succinate dehydrogenase/fumarate re	2e-05
PLN02507	499	PLN02507, PLN02507, glutathione reductase	5e-05
TIGR01421	450	TIGR01421, gluta_reduc_1, glutathione-disulfide re	7e-05
PRK07845	466	PRK07845, PRK07845, flavoprotein disulfide reducta	1e-04
pfam01134	391	pfam01134, GIDA, Glucose inhibited division protei	8e-04
PRK12839	572	PRK12839, PRK12839, hypothetical protein; Provisio	9e-04
PRK07057	591	PRK07057, sdhA, succinate dehydrogenase flavoprote	0.001
PRK09231	582	PRK09231, PRK09231, fumarate reductase flavoprotei	0.002
pfam00890	401	pfam00890, FAD_binding_2, FAD binding domain	0.002
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	0.004

>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase selenoprotein

 Score =  202 bits (516), Expect = 7e-62
 Identities = 91/164 (55%), Positives = 116/164 (70%), Gaps = 5/164 (3%)

Query: 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLF 173
           YDYDL VIGGGSGG++AAKEAA+   KV L DFVTP+  GT WG+GGTCVNVGCIPKKL 
Sbjct: 1   YDYDLIVIGGGSGGLAAAKEAAAYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLM 60

Query: 174 HRASLLNEEATTSDNFGFHMKKSFT--WKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA 231
           H+A+LL +    S N+G+ ++++    WK LV+ VQ +I +LN  Y   L + K+ Y NA
Sbjct: 61  HQAALLGQALKDSRNYGWKVEETVKHDWKRLVEAVQNHIGSLNWGYRVALREKKVKYENA 120

Query: 232 KAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGAR 272
            A FVDKHR+K     G+E+  SA+ F+IA G RP YP IPGA+
Sbjct: 121 YAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPGIPGAK 164

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. Length = 484

>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional

 Score =  184 bits (469), Expect = 8e-55
 Identities = 85/173 (49%), Positives = 113/173 (65%), Gaps = 10/173 (5%)

Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKL 172
           T+ YDL VIGGGSGG++AAKEAA+  KKVALFD+V PS  GT WGLGGTCVNVGC+PKKL
Sbjct: 3   TFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKL 62

Query: 173 FHRA----SLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDY 228
            H A    S+ + ++     +G+    SF W  LV  VQ +IR+LN +Y   L  +K++Y
Sbjct: 63  MHYAANIGSIFHHDSQ---MYGWKTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEY 119

Query: 229 FNAKAVFVDKHRVKFA--GEERTVSAQNFIIAVGGRPTYP-DIPGARLLRTLS 278
            N  A   D+H V +    +E T++A+  +IA GGRP+ P D+PGA+     S
Sbjct: 120 INGLAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSIPEDVPGAKEYSITS 172

Length = 499

>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated

 Score =  179 bits (458), Expect = 2e-53
 Identities = 72/164 (43%), Positives = 92/164 (56%), Gaps = 19/164 (11%)

Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKL 172
           T DYDL VIGGGSGGI++A  AA    KVAL +    ++      LGGTCVNVGC+PKKL
Sbjct: 2   TKDYDLIVIGGGSGGIASANRAAMYGAKVALIE----AKR-----LGGTCVNVGCVPKKL 52

Query: 173 F----HRASLLNEEATTSDNFGFHM-KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKID 227
                  A   ++ A     +GF + +  F W  L+ N   YI  L+ +Y   LE N +D
Sbjct: 53  MWYGAQIAEAFHDYAP---GYGFDVTENKFDWAKLIANRDAYIDRLHGSYRNGLENNGVD 109

Query: 228 YFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA 271
                A FVD H V+  GE    +A + +IA GGRP+ PDIPGA
Sbjct: 110 LIEGFARFVDAHTVEVNGE--RYTADHILIATGGRPSIPDIPGA 151

Length = 450

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score =  144 bits (366), Expect = 4e-40
 Identities = 61/162 (37%), Positives = 82/162 (50%), Gaps = 11/162 (6%)

Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
              +YD+ VIG G  G  AA  AA +  KVAL +            LGGTC+NVGCIP K
Sbjct: 1   MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVE----KGE----RLGGTCLNVGCIPSK 52

Query: 172 -LFHRASLLNEEATTSDNFGFHMK-KSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYF 229
            L H A ++ E    +  +G   +     ++ L+    K +R L    E  L+KN +D  
Sbjct: 53  ALLHAAEVIEEARHAAKEYGISAEVPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVI 112

Query: 230 NAKAVFVDKHRVKFAGEE-RTVSAQNFIIAVGGRPTYPDIPG 270
             +A FVD H V+  GE+  T++A N IIA G RP  P  PG
Sbjct: 113 RGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPGPG 154

Length = 454

>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant

 Score =  130 bits (328), Expect = 8e-35
 Identities = 60/163 (36%), Positives = 85/163 (52%), Gaps = 14/163 (8%)

Query: 114 YDYDLCVIGGGSGGISAAKEAASMNKKVAL--FDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
           +DYDL VIG GSGG+ AA+ AA++  KVA+     V           GGTCV  GC+PKK
Sbjct: 1   FDYDLFVIGAGSGGVRAARLAAALGAKVAIAEEFRV-----------GGTCVIRGCVPKK 49

Query: 172 LFHRASLLNEEATTSDNFGFHMKKS-FTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFN 230
           L   AS   E    +  +G+ + K+ F WK L+    + I  L+  Y K L     +  +
Sbjct: 50  LMVYASQFAEHFEDAAGYGWTVGKARFDWKKLLAAKDQEIARLSGLYRKGLANAGAELLD 109

Query: 231 AKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGARL 273
            +A  V  + V+     +T +A+  +IAVGGRP  P +PG  L
Sbjct: 110 GRAELVGPNTVEVLASGKTYTAEKILIAVGGRPPKPALPGHEL 152

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446

>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial

 Score =  126 bits (318), Expect = 3e-33
 Identities = 65/161 (40%), Positives = 91/161 (56%), Gaps = 14/161 (8%)

Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHR 175
           YD  VIGGGSGGI++A+ AA    K  L +            LGGTCVNVGC+PKK+   
Sbjct: 3   YDYLVIGGGSGGIASARRAAEHGAKALLVE---------AKKLGGTCVNVGCVPKKVMWY 53

Query: 176 ASLLNEEATTSDNFGFH--MKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA 233
           AS L E    + ++GF+  ++ +F W  L +    Y+  LN  Y+K LEKNK+D     A
Sbjct: 54  ASDLAERMHDAADYGFYQNLENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHA 113

Query: 234 VFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD-IPGARL 273
            F     V+  G +   +A + +IA GG+P++P+ IPGA L
Sbjct: 114 RFTKDGTVEVNGRD--YTAPHILIATGGKPSFPENIPGAEL 152

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score =  117 bits (297), Expect = 3e-30
 Identities = 60/160 (37%), Positives = 80/160 (50%), Gaps = 17/160 (10%)

Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFH 174
            YD+ VIG G  G  AA+ AA + KKVAL +       G    LGGTC+NVGCIP K   
Sbjct: 3   KYDVIVIGAGPAGYVAARRAAKLGKKVALIE------KGP---LGGTCLNVGCIPSKALI 53

Query: 175 RASLLNEEATTSDNFGFH-MKKSFTWKTLVDNVQKYIRNLNNNY--EKELEKNKIDYFNA 231
            A+    EA  ++ FG H       +K ++  V++  R+       E   +K KID    
Sbjct: 54  AAAEAFHEAKHAEEFGIHADGPKIDFKKVMARVRR-ERDRFVGGVVEGLEKKPKIDKIKG 112

Query: 232 KAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA 271
            A FVD + V+    ER + A+N +IA G R   P IPG 
Sbjct: 113 TARFVDPNTVE-VNGER-IEAKNIVIATGSR--VPPIPGV 148

Length = 460

>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional

 Score =  116 bits (292), Expect = 2e-29
 Identities = 62/183 (33%), Positives = 94/183 (51%), Gaps = 36/183 (19%)

Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFH 174
            YDL VIGGGSGG++AA+ AA    KVAL +            LGGTCVNVGC+PKK+  
Sbjct: 48  VYDLIVIGGGSGGMAAARRAARNKAKVALVEKDY---------LGGTCVNVGCVPKKIMF 98

Query: 175 RASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAV 234
            A+ +++    S ++GF  + SF    LV+   KYIR LN+ Y + L+K+ ++YF  K  
Sbjct: 99  NAASIHDILENSRHYGFDTQFSFNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGS 158

Query: 235 FVDKHRVKFAG---------------------------EERTVSAQNFIIAVGGRPTYPD 267
            + +++V                               + + +  +N +IAVG +P +PD
Sbjct: 159 LLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKNILIAVGNKPIFPD 218

Query: 268 IPG 270
           + G
Sbjct: 219 VKG 221

Length = 561

>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase

 Score =  111 bits (279), Expect = 9e-28
 Identities = 52/156 (33%), Positives = 75/156 (48%), Gaps = 10/156 (6%)

Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHR 175
           YDL +IG G+   +AA +AA +   VA+       + G    LGGTCVNVGC+P K+  R
Sbjct: 1   YDLVIIGSGAAAFAAAIKAAELGASVAMV------ERGP---LGGTCVNVGCVPSKMLLR 51

Query: 176 ASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNL-NNNYEKELEKNKIDYFNAKAV 234
           A+ +   A      G     +  +  L++  ++ +  L +  YE  L    +DY   +A 
Sbjct: 52  AAEVAHYARKPPFGGLAATVAVDFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRAR 111

Query: 235 FVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG 270
           F D   VK         A+ F+IA G RP  P IPG
Sbjct: 112 FKDPKTVKVDLGREVRGAKRFLIATGARPAIPPIPG 147

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463

>gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase

 Score =  110 bits (277), Expect = 2e-27
 Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 6/166 (3%)

Query: 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF-VTPSQHGTVWGLGGTCVNVGCIPKKL 172
           YD+DL VIG GSGG+ AA+ +A+   KV + +    P    ++ G+GGTCV  GC+PKK+
Sbjct: 24  YDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKI 83

Query: 173 FHRASLLNEEATTSDNFGFHM--KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFN 230
               +    E   + N+G+ +  K  F WK L+      I  LN  Y++ L    +  + 
Sbjct: 84  LVYGATFGGEFEDAKNYGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYE 143

Query: 231 AKAVFVDKHRV---KFAGEERTVSAQNFIIAVGGRPTYPDIPGARL 273
            +   V  + V   +  G +   +A++ +IA G R   P+IPG  L
Sbjct: 144 GEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQRPNIPGKEL 189

Length = 499

>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase

 Score =  107 bits (270), Expect = 2e-26
 Identities = 60/158 (37%), Positives = 79/158 (50%), Gaps = 14/158 (8%)

Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK-LFH 174
           YD+ VIGGG GG  AA  AA +  KVAL   V          LGGTC+NVGCIP K L H
Sbjct: 2   YDVIVIGGGPGGYVAAIRAAQLGLKVAL---VEKEY------LGGTCLNVGCIPTKALLH 52

Query: 175 RASLLNEEATTSDNFGFHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA 233
            A +  +E   + + G  ++  S  W+ +     K ++ L       L+KNK+     +A
Sbjct: 53  SAEVY-DEIKHAKDLGIEVENVSVDWEKMQKRKNKVVKKLVGGVSGLLKKNKVTVIKGEA 111

Query: 234 VFVDKHRVKFAGE--ERTVSAQNFIIAVGGRPTYPDIP 269
            F+D   V   GE  E T+ A+N IIA G RP     P
Sbjct: 112 KFLDPGTVSVTGENGEETLEAKNIIIATGSRPRSLPGP 149

This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460

>gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase

 Score =  107 bits (268), Expect = 4e-26
 Identities = 61/161 (37%), Positives = 86/161 (53%), Gaps = 7/161 (4%)

Query: 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD--FVTPSQHGTVWGLGGTCVNVGCIPKK 171
           YD+DL  IG GSGG+ A++ A++     A+ +  F T S   T+ G+GGTCV  GC+PKK
Sbjct: 78  YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSD-TLGGVGGTCVLRGCVPKK 136

Query: 172 LFHRASLLNEEATTSDNFG--FHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYF 229
           L   AS  + E   S  FG  +  +    W TL+ N    ++ L   Y+  L+   +   
Sbjct: 137 LLVYASKYSHEFEESRGFGWKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLI 196

Query: 230 NAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG 270
             +   VD H V   G  +  +A+N +IAVGGRP  PDIPG
Sbjct: 197 EGRGKIVDPHTVDVDG--KLYTARNILIAVGGRPFIPDIPG 235

Length = 558

>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed

 Score =  105 bits (266), Expect = 6e-26
 Identities = 58/167 (34%), Positives = 84/167 (50%), Gaps = 14/167 (8%)

Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFH 174
           +YD+ VIG G GG  AA  AA +  KVA+ +     +      LGGTC+N GCIP K   
Sbjct: 4   EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVE----KEK-----LGGTCLNRGCIPSKALL 54

Query: 175 RASLLNEEATTSDNFGFHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA 233
            A+   +EA  S++FG   +     +K + +     +  L    E  L+KNK+D    +A
Sbjct: 55  HAAERADEARHSEDFGIKAENVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEA 114

Query: 234 VFVDKH--RVKFAGEERTVSAQNFIIAVGGRP-TYPDI-PGARLLRT 276
             VD +  RV     E+T +A+N I+A G RP   P I    R++ T
Sbjct: 115 KLVDPNTVRVMTEDGEQTYTAKNIILATGSRPRELPGIEIDGRVIWT 161

Length = 462

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 98.2 bits (245), Expect = 5e-24
 Identities = 44/164 (26%), Positives = 61/164 (37%), Gaps = 36/164 (21%)

Query: 117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRA 176
           D+ +IGGG  G++AA   A +  KVAL +             GGTC N GC+PKKL    
Sbjct: 1   DVVIIGGGPAGLAAAIRLARLGLKVALIE-----------REGGTCYNRGCLPKKLLLEV 49

Query: 177 SLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFV 236
           +   E A                       ++  +      E  L    +D    +   V
Sbjct: 50  AEGLELAIGL-----------------ALPEEVYK--EFGVEVLLGTEVVDIDRGEKTVV 90

Query: 237 DKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGARL--LRTLS 278
            K         R ++    IIA G RP  P IPG  +  LR + 
Sbjct: 91  LKDVET----GREITYDKLIIATGARPRIPGIPGVEVATLRGVI 130

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score = 96.4 bits (241), Expect = 2e-22
 Identities = 46/158 (29%), Positives = 68/158 (43%), Gaps = 14/158 (8%)

Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHR 175
           YD  VIG G  G   A  AA +  KVAL +     +      LGGTCVN GC+P K    
Sbjct: 6   YDAIVIGAGQAGPPLAARAAGLGMKVALIE-----RGL----LGGTCVNTGCVPTKTLIA 56

Query: 176 ASLLNEEATTSDNFGFHMKKSFT--WKTLVDNVQKYIRNLNNNYEKELEK-NKIDYFNAK 232
           ++     A  +  +G  +    +  +K ++   ++      +  E+ L     +D F   
Sbjct: 57  SARAAHLARRAAEYGVSVGGPVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGH 116

Query: 233 AVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG 270
           A F   + V+  GE  T+ A+   I  G R   P IPG
Sbjct: 117 ARFESPNTVRVGGE--TLRAKRIFINTGARAAIPPIPG 152

Length = 463

>gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional

 Score = 95.6 bits (239), Expect = 3e-22
 Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 15/177 (8%)

Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
             YDYDL VIG G  G  AA +AA + K+VA+ +     ++     +GG C + G IP K
Sbjct: 2   HMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIE-----RY---RNVGGGCTHTGTIPSK 53

Query: 172 -LFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFN 230
            L      L           + +K   T+  L+      I         + E+N++D   
Sbjct: 54  ALREAVLRLIGFNQNPLYSSYRVKLRITFADLLARADHVINKQVEVRRGQYERNRVDLIQ 113

Query: 231 AKAVFVDKHRV---KFAGEERTVSAQNFIIAVGGRPTYP-DIP--GARLLRTLSLLS 281
            +A FVD H V      GE  T++A   +IA G RP  P D+     R+  + S+LS
Sbjct: 114 GRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHPRIYDSDSILS 170

Length = 461

>gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase

 Score = 88.9 bits (220), Expect = 8e-20
 Identities = 60/170 (35%), Positives = 86/170 (50%), Gaps = 18/170 (10%)

Query: 116 YDLCVIGGGSGGISAAKEAASMNKK-VALFDFVTPSQHGTVW--GLGGTCVNVGCIPKKL 172
           +DL VIG GSGG+ A   AA++ KK VA+ D  T   HG  +   LGGTCVNVGC+PKKL
Sbjct: 4   FDLVVIGAGSGGLEAGWNAATLYKKRVAVVDVQT--HHGPPFYAALGGTCVNVGCVPKKL 61

Query: 173 FHRASLLNEEATTSDNFGFHMKKSF---TWKTLVDNVQKYIRNLNNNYEKELEKNK-IDY 228
               +   +    S  FG+   +S     WK L+    K + ++N +YE      + + +
Sbjct: 62  MVTGAQYMDTLRESAGFGWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTF 121

Query: 229 FNAKAVFVDKHRV--------KFAGEERTVSAQNFIIAVGGRPTYPDIPG 270
           F       DK+ V        K A +ER + A++ ++A G  P    IPG
Sbjct: 122 FLGWGALEDKNVVLVRESADPKSAVKER-LQAEHILLATGSWPQMLGIPG 170

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486

>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated

 Score = 87.3 bits (217), Expect = 2e-19
 Identities = 50/170 (29%), Positives = 72/170 (42%), Gaps = 23/170 (13%)

Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK--- 171
            +D+ VIG G GG  AA  AA +  KVA  +     +      LGGTC+NVGCIP K   
Sbjct: 4   QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKP--ALGGTCLNVGCIPSKALL 61

Query: 172 ----LFHRASLLNEEATTSDNFGFHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKI 226
                F  A     +       G H+         ++    K ++ +    E   +KNKI
Sbjct: 62  ASSEEFENAGHHFAD------HGIHVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKI 115

Query: 227 DYFNAKAVFV----DKHRVKFAGE-ERTVSAQNFIIAVGGRPTYPDIPGA 271
                +  FV      + +K  GE E  ++A++ IIA G  P    +PG 
Sbjct: 116 TVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPR--HLPGV 163

Length = 475

>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed

 Score = 85.4 bits (212), Expect = 9e-19
 Identities = 44/160 (27%), Positives = 68/160 (42%), Gaps = 15/160 (9%)

Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFH 174
            YDL +IG GSG     +  A   K++A+ +       GT    GGTC+NVGCIP K+F 
Sbjct: 1   HYDLIIIGTGSGNSILDERFAD--KRIAIVE------KGT---FGGTCLNVGCIPTKMFV 49

Query: 175 RASLLNEEATTSDNFGFHMK-KSFTWKTLVDNVQKYIRNLNNNYE--KELEKNKIDYFNA 231
            A+ +      +   G   +     W  +V  V   I  +    E  +  +   ID +  
Sbjct: 50  YAADVARTIREAARLGVDAELDGVRWPDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRG 109

Query: 232 KAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA 271
            A F+    ++    E  ++A   +IA G RP  P +   
Sbjct: 110 HARFIGPKTLRTGDGE-EITADQVVIAAGSRPVIPPVIAD 148

Length = 451

>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed

 Score = 81.2 bits (201), Expect = 3e-17
 Identities = 40/165 (24%), Positives = 60/165 (36%), Gaps = 28/165 (16%)

Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD-FVTPSQHGTVWGLGGTCVNVGCIPKK--- 171
             + V+G G  G SAA  AA +  +    + + T         LGG C+NVGCIP K   
Sbjct: 5   TQVVVLGAGPAGYSAAFRAADLGLETVCVERYST---------LGGVCLNVGCIPSKALL 55

Query: 172 ----LFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKID 227
               +   A  L E           + K    K      +K ++ L        +  K+ 
Sbjct: 56  HVAKVIEEAKALAEHGIVFGEPKIDIDKMRARK------EKVVKQLTGGLAGMAKGRKVT 109

Query: 228 YFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIP 269
             N    F   + ++     G+   +   N IIA G RP    +P
Sbjct: 110 VVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPI--QLP 152

Length = 471

>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated

 Score = 80.9 bits (200), Expect = 4e-17
 Identities = 51/152 (33%), Positives = 73/152 (48%), Gaps = 14/152 (9%)

Query: 118 LCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRAS 177
           L VIGGG  G  AA  AA   K V L D            LGGTC+N GC+P K    ++
Sbjct: 3   LVVIGGGPAGYVAAITAAQNGKNVTLIDEAD---------LGGTCLNEGCMPTKSLLESA 53

Query: 178 LLNEEATTSDNFGFHMKK---SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAV 234
            ++++   +++FG  +     S  WK +     + +  L    +  ++KNKI     KA 
Sbjct: 54  EVHDKVKKANHFGITLPNGSISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKAS 113

Query: 235 FVDKHR--VKFAGEERTVSAQNFIIAVGGRPT 264
           F   HR  V++  +E  V A+ FIIA G  PT
Sbjct: 114 FETDHRVRVEYGDKEEVVDAEQFIIAAGSEPT 145

Length = 458

>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed

 Score = 76.4 bits (188), Expect = 1e-15
 Identities = 50/160 (31%), Positives = 74/160 (46%), Gaps = 15/160 (9%)

Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHR 175
           YD+ +IGGG GG +AA  A  +  KVA  +        T   LGGTC+NVGC+P K    
Sbjct: 4   YDVVIIGGGPGGYNAAIRAGQLGLKVACVE-----GRST---LGGTCLNVGCMPSKALLH 55

Query: 176 ASLLNEEATTSD--NFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA 233
           AS L E A+  +  + G  +K +     ++    + +  L    E    KNK+D+     
Sbjct: 56  ASELYEAASGGEFAHLGIEVKPTLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWG 115

Query: 234 VFVDKHRVKFAGE---ERTVSAQNFIIAVGGRPTYPDIPG 270
                 +V    E   E  + A++ +IA G  PT   +PG
Sbjct: 116 RLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPT--PLPG 153

Length = 466

>gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated

 Score = 74.9 bits (185), Expect = 3e-15
 Identities = 49/176 (27%), Positives = 69/176 (39%), Gaps = 33/176 (18%)

Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
              +YDL +IGGG GG  AA  A  +  K AL   V   +      LGGTC++ GCIP K
Sbjct: 1   MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTAL---VEKGK------LGGTCLHKGCIPSK 51

Query: 172 LFHRASLLNEEATTSDNFG-------FHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKN 224
               ++ + + A  +  FG           K    K         +  L       L+K 
Sbjct: 52  ALLHSAEVFQTAKKASPFGISVSGPALDFAKVQERK------DGIVDRLTKGVAALLKKG 105

Query: 225 KIDYFNAKAVFVDKH---------RVKFA-GEERTVSAQNFIIAVGGRP-TYPDIP 269
           KID F+     +             V+   GE   +  +N +IA G RP   P +P
Sbjct: 106 KIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPGLP 161

Length = 472

>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase

 Score = 73.6 bits (181), Expect = 1e-14
 Identities = 47/158 (29%), Positives = 69/158 (43%), Gaps = 17/158 (10%)

Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFH 174
            YDL +IG GSG        A   K++A+       + GT    GGTC+NVGCIP K+F 
Sbjct: 2   HYDLIIIGTGSGNSIPDPRFAD--KRIAIV------EKGT---FGGTCLNVGCIPTKMFV 50

Query: 175 RASLLNEEATTSDNFGFHMK-KSFTWKTLVDNVQKY----IRNLNNNYEKELEKNKIDYF 229
            A+ + +    S   G   +  S  W  +V  V       I     +Y +  E   ID +
Sbjct: 51  YAAEVAQSIGESARLGIDAEIDSVRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVY 110

Query: 230 NAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD 267
           +  A FV    ++  G+   ++    +IA G RP  P 
Sbjct: 111 DGHARFVGPRTLR-TGDGEEITGDQIVIAAGSRPYIPP 147

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452

>gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional

 Score = 73.8 bits (181), Expect = 1e-14
 Identities = 47/161 (29%), Positives = 70/161 (43%), Gaps = 22/161 (13%)

Query: 120 VIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLL 179
           +IG GS   +AA +AA    +V +       +   V  +GG CVNVGC+P K+  RA+ L
Sbjct: 21  IIGSGSAAFAAAIKAAEHGARVTII------EGADV--IGGCCVNVGCVPSKILIRAAQL 72

Query: 180 NEEATTSDNFGFHMKKSFTWKTLVDNVQ----------KYIRNLNNNYEKELEKNKIDYF 229
             +  ++   G         + L+ + Q          KY   L+ N    L K    + 
Sbjct: 73  AHQQRSNPFDGVEAVAPSIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFK 132

Query: 230 NAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG 270
           +   + V  H     G ER ++A   +IA G  PT P IPG
Sbjct: 133 DGNTLVVRLHD----GGERVLAADRCLIATGSTPTIPPIPG 169

Length = 479

>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed

 Score = 72.4 bits (178), Expect = 3e-14
 Identities = 54/171 (31%), Positives = 73/171 (42%), Gaps = 27/171 (15%)

Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHR 175
           YD+ V+G G GG  AA  AA +  K A    V   ++   WG  G C+NVGCIP K   R
Sbjct: 5   YDVVVLGAGPGGYVAAIRAAQLGLKTA----VVEKKY---WG--GVCLNVGCIPSKALLR 55

Query: 176 ----ASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA 231
               A +  +EA T   FG   + +F +    D  +K            ++KNKI   + 
Sbjct: 56  NAELAHIFTKEAKT---FGISGEVTFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHG 112

Query: 232 KAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGARLLRTLSL 279
              F D + ++     G   TV+  N IIA G           RLL   SL
Sbjct: 113 YGTFTDANTLEVDLNDGGTETVTFDNAIIATGSST--------RLLPGTSL 155

Length = 466

>gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional

 Score = 71.1 bits (174), Expect = 7e-14
 Identities = 52/171 (30%), Positives = 74/171 (43%), Gaps = 23/171 (13%)

Query: 108 DNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGC 167
           DNN       + VIG G   ++AA +A     +V L       + GT+   GGTCVN+GC
Sbjct: 4   DNNLH-----IAVIGSGGSAMAAALKATERGARVTLI------ERGTI---GGTCVNIGC 49

Query: 168 IPKKLFHRA---SLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNL-NNNYEKELEK 223
           +P K+  RA   + L  E+   D              L+   Q  +  L  + Y+  L +
Sbjct: 50  VPSKIMIRAAHIAHLRRESPFDDGLSAQAPV-VDRSALLAQQQARVEELRESKYQSILRE 108

Query: 224 NK-IDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPG 270
           N  I   N +A FVD+  +      G E+TV      I  G RP  P +PG
Sbjct: 109 NAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPG 159

Length = 468

>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 67.1 bits (164), Expect = 1e-12
 Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 27/158 (17%)

Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIP-KKLFH 174
           YDL VIG G  G + A + AS  KKVAL +     +   ++G  GTC+N+GCIP K L  
Sbjct: 4   YDLIVIGFGKAGKTLAAKLASAGKKVALVE-----ESKAMYG--GTCINIGCIPTKTLLV 56

Query: 175 RASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAV 234
            A                  K+ +++ ++         L       L  + +D ++A+A 
Sbjct: 57  AAE-----------------KNLSFEQVMATKNTVTSRLRGKNYAMLAGSGVDLYDAEAH 99

Query: 235 FVDKHRVKF-AGEERT-VSAQNFIIAVGGRPTYPDIPG 270
           FV    ++  AG+E+  ++A+  +I  G       IPG
Sbjct: 100 FVSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPIPG 137

Length = 438

>gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 49/159 (30%), Positives = 69/159 (43%), Gaps = 18/159 (11%)

Query: 120 VIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASL- 178
           VIG G   ++AA +A     +V L       + GT+   GGTCVNVGC+P K+  RA+  
Sbjct: 103 VIGSGGAAMAAALKAVEQGARVTLI------ERGTI---GGTCVNVGCVPSKIMIRAAHI 153

Query: 179 --LNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNN-NYEKELEKN-KIDYFNAKAV 234
             L  E+            +     L+   Q  +  L +  YE  L+ N  I   + +A 
Sbjct: 154 AHLRRESPFDGGIAAT-VPTIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEAR 212

Query: 235 FVDKHRV---KFAGEERTVSAQNFIIAVGGRPTYPDIPG 270
           F D   +      G ER V+    +IA G  P  P IPG
Sbjct: 213 FKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPG 251

Length = 561

>gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional

 Score = 60.7 bits (147), Expect = 2e-10
 Identities = 51/187 (27%), Positives = 67/187 (35%), Gaps = 36/187 (19%)

Query: 110 NFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIP 169
           NF   +YD+ +IG G GG +AA  A     KV +F     S       +GGTCVNVGCIP
Sbjct: 111 NFSDEEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDS-------IGGTCVNVGCIP 163

Query: 170 KKLFHRAS----------LLNEEATTSDNFGFHMKKSFTWKTLVDN------------VQ 207
            K    A+           L      ++ F            LV +             Q
Sbjct: 164 SKALLYATGKYRELKNLAKLYTYGIYTNAFKNGKNDPVERNQLVADTVQIDITKLKEYTQ 223

Query: 208 KYIRNLNNNYEKELEKNKIDYFNAKAV-------FVDKHRVKFAGEERTVSAQNFIIAVG 260
             I  L    E  L+  K    +            VDK+ +K     +    +N IIA G
Sbjct: 224 SVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEKSGKEFKVKNIIIATG 283

Query: 261 GRPTYPD 267
             P  PD
Sbjct: 284 STPNIPD 290

Length = 659

>gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 59.6 bits (144), Expect = 4e-10
 Identities = 41/157 (26%), Positives = 66/157 (42%), Gaps = 24/157 (15%)

Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHR 175
           Y   +IG G  G + A   A    +VAL +     Q   ++G  GTC+N+GCIP K    
Sbjct: 4   YQAVIIGFGKAGKTLAVTLAKAGWRVALIE-----QSNAMYG--GTCINIGCIPTK---- 52

Query: 176 ASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVF 235
              L  +A    +F   +++        + V  ++R  N N+    +   ID  + +A F
Sbjct: 53  --TLVHDAQQHTDFVRAIQRK-------NEVVNFLR--NKNFHNLADMPNIDVIDGQAEF 101

Query: 236 VDKH--RVKFAGEERTVSAQNFIIAVGGRPTYPDIPG 270
           ++ H  RV        +  +   I  G +   P IPG
Sbjct: 102 INNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPG 138

Length = 441

>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional

 Score = 59.1 bits (143), Expect = 7e-10
 Identities = 24/37 (64%), Positives = 29/37 (78%)

Query: 23  NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAIS 59
           NAGEITQG++L + LGA K DFD++IGIHPT AE   
Sbjct: 439 NAGEITQGFSLALKLGAKKSDFDSMIGIHPTDAEVFM 475

Length = 499

>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase selenoprotein

 Score = 54.1 bits (130), Expect = 3e-08
 Identities = 20/34 (58%), Positives = 24/34 (70%)

Query: 23  NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAE 56
           NAGE+TQG+A  +  G  K+D D  IGIHP CAE
Sbjct: 429 NAGEVTQGFAAALRCGLTKKDLDNTIGIHPVCAE 462

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. Length = 484

>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated

 Score = 52.5 bits (127), Expect = 9e-08
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 23  NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAE 56
            A E+ QG+A+ + +GA K DFD  + IHPT AE
Sbjct: 411 GADEMIQGFAVAIKMGATKADFDNTVAIHPTAAE 444

Length = 450

>gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 20/34 (58%), Positives = 24/34 (70%)

Query: 23  NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAE 56
           +A EI QG+A+ V  G  K DFDA +GIHPT AE
Sbjct: 493 DAPEIIQGFAVAVKAGLTKADFDATVGIHPTAAE 526

Length = 558

>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 18/42 (42%), Positives = 27/42 (64%)

Query: 15  ITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAE 56
           + A +   +A EI QG A+ + +GA K DFD+ + +HPT AE
Sbjct: 399 LGAHMVGPDAAEIIQGLAIALKMGATKDDFDSTVAVHPTSAE 440

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446

>gnl|CDD|217252 pfam02852, Pyr_redox_dim, Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 18/42 (42%), Positives = 24/42 (57%)

Query: 17  AEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
           A I   NAGE+ Q  AL + +GA  +D    I  HPT +EA+
Sbjct: 65  AHIVGPNAGELIQEAALAIKMGATVEDLANTIHAHPTLSEAL 106

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. Length = 110

>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase

 Score = 47.2 bits (113), Expect = 5e-06
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 8/45 (17%)

Query: 117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGT 161
           D+ V+GGG  G++AA  AA +  KV L   V          LGG 
Sbjct: 1   DVVVVGGGPAGVAAAIAAARLGAKVLL---VERRGW-----LGGM 37

This family of proteins contains FAD dependent oxidoreductases and related proteins. Length = 415

>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 19/36 (52%), Positives = 23/36 (63%)

Query: 23  NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
           NA EI QG+A+ + + A K DFD  I IHPT AE  
Sbjct: 518 NADEILQGFAVALKMNATKADFDETIPIHPTAAEEF 553

Length = 561

>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 21/50 (42%), Positives = 27/50 (54%)

Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGT 161
             +++D+ VIGGG  G+ AA EAA    KVAL     P +  TV   GG 
Sbjct: 3   TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGI 52

Length = 562

>gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 23  NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAE 56
           +A EI QG A+ +  GA K  FD+ +GIHP+ AE
Sbjct: 444 DAPEIMQGIAVALKCGATKAQFDSTVGIHPSAAE 477

Length = 499

>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial

 Score = 43.7 bits (103), Expect = 7e-05
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 26  EITQGYALGVMLGAYKQDFDALIGIHPTCAE 56
           E+ QG+A+ + +GA K DFD  + IHPT +E
Sbjct: 414 EMLQGFAVAIKMGATKADFDNTVAIHPTSSE 444

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450

>gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 40/164 (24%), Positives = 61/164 (37%), Gaps = 22/164 (13%)

Query: 120 VIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLL 179
           +IGGG GG  AA  AA +   V + +           GLGG  V   C+P K     + +
Sbjct: 6   IIGGGPGGYEAALVAAQLGADVTVIE----RD-----GLGGAAVLTDCVPSKTLIATAEV 56

Query: 180 NEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNL----NNNYEKELEKNKIDYFNAKAVF 235
             E   +   G         +  +  V   ++ L    + +    LE+  +     +   
Sbjct: 57  RTELRRAAELGIRFIDDGEARVDLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRL 116

Query: 236 VDK----HRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPGAR 272
           +D     HRVK     G E T+ A   +IA G  P    +P A 
Sbjct: 117 IDPGLGPHRVKVTTADGGEETLDADVVLIATGASPR--ILPTAE 158

Length = 466

>gnl|CDD|216319 pfam01134, GIDA, Glucose inhibited division protein A

 Score = 40.2 bits (95), Expect = 8e-04
 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 11/53 (20%)

Query: 117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIP 169
           D+ VIGGG  G  AA  AA M  KV L    T +          T   + C P
Sbjct: 1   DVIVIGGGHAGCEAALAAARMGAKVLLI---THN--------TDTIAELSCNP 42

Length = 391

>gnl|CDD|237223 PRK12839, PRK12839, hypothetical protein; Provisional

 Score = 40.2 bits (94), Expect = 9e-04
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKL 172
           T+ YD+ V+G G+GG+SAA  AA    KV + +  +     T W  G         P   
Sbjct: 6   THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAWSGGWMWT-----PGNS 60

Query: 173 FHRASLLNEEATT 185
             RA  + E+   
Sbjct: 61  LARADGVVEDKEE 73

Length = 572

>gnl|CDD|180814 PRK07057, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 16/85 (18%)

Query: 109 NNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCI 168
            +     +D+ ++G G  G+ A+ + A     VA+   V P++  TV   GG    +G  
Sbjct: 6   TSLPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTVAAQGG----IG-- 59

Query: 169 PKKLFHRASLLNEEATTSDNFGFHM 193
                  ASL N    + DN+ +H 
Sbjct: 60  -------ASLGN---MSEDNWHYHF 74

Length = 591

>gnl|CDD|236421 PRK09231, PRK09231, fumarate reductase flavoprotein subunit; Validated

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNK--KVALFDFVTPSQHGTVWGLGG 160
           QT+  DL +IG G  G+ AA  AA  N   K+AL   V P +  TV   GG
Sbjct: 1   QTFQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGG 51

Length = 582

>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 19/47 (40%), Positives = 24/47 (51%)

Query: 117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCV 163
           D+ VIG G  G++AA EAA    KVA+ +   P    T W  GG   
Sbjct: 1   DVVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGATAWSSGGIDA 47

This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 33/158 (20%), Positives = 51/158 (32%), Gaps = 40/158 (25%)

Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFH 174
            YD+ +IGGG  G++AA  AA    KV L                      G  P     
Sbjct: 3   IYDVIIIGGGPAGLTAAIYAARAGLKVVLIL-------------------EGGEPGGQL- 42

Query: 175 RASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAV 234
                  + T  +N+       F    L          L    +++ EK  ++    +  
Sbjct: 43  ------TKTTDVENY-----PGFPGGIL-------GPELMEQMKEQAEKFGVEIVEDEVE 84

Query: 235 FVDKHRVKFA--GEERTVSAQNFIIAVGGRPTYPDIPG 270
            V+     F    ++ T  A+  IIA G       +PG
Sbjct: 85  KVELEGGPFKVKTDKGTYEAKAVIIATGAGARKLGVPG 122

Length = 305

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	296
KOG4716|consensus	503		99.96
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	99.94
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	99.93
PTZ00058	561	glutathione reductase; Provisional	99.92
PLN02546	558	glutathione reductase	99.92
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	99.92
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	99.91
KOG0405|consensus	478		99.91
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	99.91
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	99.91
PTZ00052	499	thioredoxin reductase; Provisional	99.91
PRK06370	463	mercuric reductase; Validated	99.91
PRK06116	450	glutathione reductase; Validated	99.91
PLN02507	499	glutathione reductase	99.9
TIGR02053	463	MerA mercuric reductase. This model represents the	99.9
PRK14727	479	putative mercuric reductase; Provisional	99.89
PRK07846	451	mycothione reductase; Reviewed	99.89
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.89
PRK14694	468	putative mercuric reductase; Provisional	99.89
KOG1335|consensus	506		99.89
PTZ00153	659	lipoamide dehydrogenase; Provisional	99.89
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	99.88
PRK13748	561	putative mercuric reductase; Provisional	99.88
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	99.88
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	99.88
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	99.87
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	99.87
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	99.87
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	99.86
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	99.86
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	99.86
PRK07845	466	flavoprotein disulfide reductase; Reviewed	99.86
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	99.85
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	99.83
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.63
COG2081	408	Predicted flavoproteins [General function predicti	99.61
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.58
PRK10262	321	thioredoxin reductase; Provisional	99.56
KOG1399|consensus	448		99.56
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.53
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.52
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.52
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.51
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.51
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.49
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.48
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.44
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	99.43
PRK12831	464	putative oxidoreductase; Provisional	99.42
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.39
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	99.33
PF02852	110	Pyr_redox_dim: Pyridine nucleotide-disulphide oxid	99.31
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	99.31
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	99.29
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.27
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.25
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	99.23
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.22
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.21
PLN02852	491	ferredoxin-NADP+ reductase	99.21
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	99.2
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.2
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	99.2
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	99.17
PRK10157	428	putative oxidoreductase FixC; Provisional	99.16
PRK10015	429	oxidoreductase; Provisional	99.15
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	99.15
PRK09564	444	coenzyme A disulfide reductase; Reviewed	99.14
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	99.14
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.13
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.13
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	99.12
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	99.12
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	99.12
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.12
PRK12814	652	putative NADPH-dependent glutamate synthase small	99.12
KOG1335|consensus	506		99.11
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.11
KOG0404|consensus	322		99.09
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	99.08
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	99.08
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	99.07
PRK12770	352	putative glutamate synthase subunit beta; Provisio	99.07
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.07
PRK14989	847	nitrite reductase subunit NirD; Provisional	99.07
PLN02463	447	lycopene beta cyclase	99.06
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	99.06
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	99.05
PLN02546	558	glutathione reductase	99.04
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	99.03
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.03
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	99.03
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	99.03
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	99.02
PRK13984	604	putative oxidoreductase; Provisional	99.01
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	99.01
PRK13512	438	coenzyme A disulfide reductase; Provisional	99.01
PRK08401	466	L-aspartate oxidase; Provisional	99.0
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	99.0
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.99
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.98
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.98
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.98
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.97
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.97
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.97
PRK08274	466	tricarballylate dehydrogenase; Validated	98.96
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.96
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.95
PLN02697	529	lycopene epsilon cyclase	98.95
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.95
PRK06834	488	hypothetical protein; Provisional	98.94
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.93
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.92
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.92
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.92
PRK06370	463	mercuric reductase; Validated	98.91
PRK14694	468	putative mercuric reductase; Provisional	98.91
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.9
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.9
PLN02507	499	glutathione reductase	98.9
PRK06847	375	hypothetical protein; Provisional	98.9
PRK07804	541	L-aspartate oxidase; Provisional	98.89
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.89
PRK14727	479	putative mercuric reductase; Provisional	98.89
PRK06175	433	L-aspartate oxidase; Provisional	98.89
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.89
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.89
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.89
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.88
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.88
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.88
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.87
PRK07121	492	hypothetical protein; Validated	98.87
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.87
PRK08244	493	hypothetical protein; Provisional	98.87
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.87
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.87
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.87
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.87
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.87
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.87
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.87
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.87
PRK06116	450	glutathione reductase; Validated	98.86
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.86
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.86
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.86
PLN02815	594	L-aspartate oxidase	98.86
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	98.86
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.86
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.85
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.85
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.85
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.85
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.85
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.85
PLN02661	357	Putative thiazole synthesis	98.84
PRK08275	554	putative oxidoreductase; Provisional	98.84
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.83
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.83
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.83
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.83
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.83
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.82
PRK07190	487	hypothetical protein; Provisional	98.82
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.82
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.82
PTZ00058	561	glutathione reductase; Provisional	98.81
PRK11445	351	putative oxidoreductase; Provisional	98.81
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.81
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.81
PRK06184	502	hypothetical protein; Provisional	98.8
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.8
PTZ00052	499	thioredoxin reductase; Provisional	98.8
PTZ00188	506	adrenodoxin reductase; Provisional	98.8
PRK07395	553	L-aspartate oxidase; Provisional	98.8
KOG0399|consensus	2142		98.8
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.8
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.79
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.78
PRK07846	451	mycothione reductase; Reviewed	98.78
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.78
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.78
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.77
TIGR02053	463	MerA mercuric reductase. This model represents the	98.77
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.77
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.76
PRK08013	400	oxidoreductase; Provisional	98.75
KOG2311|consensus	679		98.75
PRK07588	391	hypothetical protein; Provisional	98.75
PRK08071	510	L-aspartate oxidase; Provisional	98.75
PRK13748	561	putative mercuric reductase; Provisional	98.74
PRK09126	392	hypothetical protein; Provisional	98.74
PRK06126	545	hypothetical protein; Provisional	98.73
PRK09077	536	L-aspartate oxidase; Provisional	98.72
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.72
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.72
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	98.72
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.72
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.72
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.7
PRK07512	513	L-aspartate oxidase; Provisional	98.7
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.7
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.7
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.7
PLN02985	514	squalene monooxygenase	98.7
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.69
PRK08163	396	salicylate hydroxylase; Provisional	98.69
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.69
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.69
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.68
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	98.68
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.68
PRK12839	572	hypothetical protein; Provisional	98.67
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.67
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.67
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.67
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.66
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.66
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.65
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.65
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.64
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.64
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.64
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.64
PRK07045	388	putative monooxygenase; Reviewed	98.63
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.62
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.61
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.61
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.6
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.6
PRK06185	407	hypothetical protein; Provisional	98.6
PRK07236	386	hypothetical protein; Provisional	98.59
PRK10262	321	thioredoxin reductase; Provisional	98.59
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.59
PRK09897	534	hypothetical protein; Provisional	98.58
PRK06753	373	hypothetical protein; Provisional	98.58
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.57
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.57
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.56
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.56
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	98.56
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.56
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.55
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.55
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.55
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	98.54
KOG2820|consensus	399		98.54
KOG0405|consensus	478		98.54
PRK06475	400	salicylate hydroxylase; Provisional	98.53
PRK05868	372	hypothetical protein; Validated	98.52
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.51
KOG1336|consensus	478		98.51
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.5
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.49
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.49
KOG1800|consensus	468		98.47
PRK06996	398	hypothetical protein; Provisional	98.47
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	98.47
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.46
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.46
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.46
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.45
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	98.45
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.44
PRK07538	413	hypothetical protein; Provisional	98.44
KOG0029|consensus	501		98.43
PTZ00367	567	squalene epoxidase; Provisional	98.4
COG0579	429	Predicted dehydrogenase [General function predicti	98.4
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.39
PRK12831	464	putative oxidoreductase; Provisional	98.39
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.38
PRK08294	634	phenol 2-monooxygenase; Provisional	98.37
KOG2614|consensus	420		98.35
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.34
PRK07208	479	hypothetical protein; Provisional	98.33
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.32
KOG1336|consensus	478		98.32
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.31
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.3
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	98.3
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.3
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	98.29
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.29
KOG4716|consensus	503		98.29
KOG2415|consensus	621		98.28
PRK07233	434	hypothetical protein; Provisional	98.28
PLN02576	496	protoporphyrinogen oxidase	98.28
KOG2495|consensus	491		98.28
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.27
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.26
PLN02268	435	probable polyamine oxidase	98.26
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.25
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	98.25
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.25
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.21
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.21
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	98.21
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.2
COG3349	485	Uncharacterized conserved protein [Function unknow	98.19
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.18
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.18
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.17
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.12
KOG1298|consensus	509		98.12
KOG2404|consensus	477		98.12
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	98.1
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.1
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.08
KOG3851|consensus	446		98.08
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	98.06
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.05
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.04
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.03
PRK12416	463	protoporphyrinogen oxidase; Provisional	98.03
KOG2495|consensus	491		98.03
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	98.02
PLN02568	539	polyamine oxidase	98.02
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	98.02
PLN02529	738	lysine-specific histone demethylase 1	98.01
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	98.01
PLN02676	487	polyamine oxidase	97.98
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.94
PLN02464	627	glycerol-3-phosphate dehydrogenase	97.93
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	97.91
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	97.9
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.89
COG3573	552	Predicted oxidoreductase [General function predict	97.89
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	97.88
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.88
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	97.88
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.88
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.87
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	97.87
KOG2755|consensus	334		97.86
PRK13339	497	malate:quinone oxidoreductase; Reviewed	97.85
PRK05257	494	malate:quinone oxidoreductase; Validated	97.84
PLN02328	808	lysine-specific histone demethylase 1 homolog	97.82
PRK13977	576	myosin-cross-reactive antigen; Provisional	97.81
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	97.78
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.74
PLN02487	569	zeta-carotene desaturase	97.72
PLN02612	567	phytoene desaturase	97.71
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.69
KOG0685|consensus	498		97.68
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	97.67
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.66
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	97.66
PLN03000	881	amine oxidase	97.66
KOG4254|consensus	561		97.64
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.62
KOG2844|consensus	856		97.61
PRK02106	560	choline dehydrogenase; Validated	97.6
PLN02976	1713	amine oxidase	97.57
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	97.54
PRK13984	604	putative oxidoreductase; Provisional	97.51
PTZ00383	497	malate:quinone oxidoreductase; Provisional	97.5
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	97.48
KOG2852|consensus	380		97.48
KOG1276|consensus	491		97.43
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.36
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	97.31
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	97.31
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	97.29
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	97.26
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.24
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	97.22
KOG2853|consensus	509		97.2
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.14
PLN02785	587	Protein HOTHEAD	97.12
KOG2960|consensus	328		97.1
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	97.05
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	96.89
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.87
COG2907	447	Predicted NAD/FAD-binding protein [General functio	96.84
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	96.84
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.8
KOG0042|consensus	680		96.75
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	96.7
KOG2665|consensus	453		96.66
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	96.63
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	96.5
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	96.46
KOG1238|consensus	623		96.31
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.15
KOG3855|consensus	481		96.1
KOG1346|consensus	659		96.08
PLN02852	491	ferredoxin-NADP+ reductase	96.03
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.0
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	95.7
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	95.7
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	95.64
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.61
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	95.58
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	95.56
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.45
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.41
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.37
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	95.22
KOG0399|consensus	2142		95.18
KOG0404|consensus	322		95.08
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.01
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	94.99
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	94.97
PRK15116	268	sulfur acceptor protein CsdL; Provisional	94.86
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	94.84
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	94.83
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	94.48
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	94.42
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	94.36
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	94.33
KOG3923|consensus	342		94.32
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	94.28
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	94.26
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	94.24
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.12
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.93
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	93.92
PRK04148	134	hypothetical protein; Provisional	93.89
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	93.87
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	93.83
KOG4405|consensus	547		93.76
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	93.75
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.75
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.64
KOG1399|consensus	448		93.63
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	93.62
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	93.62
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	93.55
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	93.54
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	93.4
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.39
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.36
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	93.28
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	93.27
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	93.25
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	93.23
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	93.18
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	93.16
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	93.11
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	93.04
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	92.97
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	92.88
PRK05562	223	precorrin-2 dehydrogenase; Provisional	92.85
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	92.69
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	92.56
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	92.53
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	92.53
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	92.33
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	92.32
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	92.26
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	92.24
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.15
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	92.11
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.08
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	92.02
PRK08328	231	hypothetical protein; Provisional	92.0
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	91.99
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	91.9
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	91.87
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	91.86
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	91.81
PLN02353	473	probable UDP-glucose 6-dehydrogenase	91.79
PRK06223	307	malate dehydrogenase; Reviewed	91.78
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	91.76
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	91.65
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	91.61
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.59
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	91.51
PTZ00082	321	L-lactate dehydrogenase; Provisional	91.48
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.44
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	91.43
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	91.41
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	91.37
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	91.34
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	91.29
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	91.28
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	91.26
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	91.21
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	91.16
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	91.08
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	91.03
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	90.9
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	90.84
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	90.73
PRK08306	296	dipicolinate synthase subunit A; Reviewed	90.67
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.54
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	90.47
PTZ00117	319	malate dehydrogenase; Provisional	90.44
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	90.43
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	90.34
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	90.26
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	90.23
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	90.19
PRK08223	287	hypothetical protein; Validated	90.16
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	90.14
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	90.04
PRK11730	715	fadB multifunctional fatty acid oxidation complex	90.03
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.98

>KOG4716|consensus

Probab=99.96  E-value=3.2e-28  Score=205.86  Aligned_cols=179  Identities=50%  Similarity=0.928  Sum_probs=162.5

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcc
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFH  192 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~  192 (296)
                      ..+||.+|||||.+|++||.+++..|.+|.++|+..+.+.|++|.+||+|.|.||+|++++++++.+.+.+.....|||.
T Consensus        17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~   96 (503)
T KOG4716|consen   17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWN   96 (503)
T ss_pred             cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCCC
Q psy7665         193 MKK---SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYP  266 (296)
Q Consensus       193 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~p  266 (296)
                      .+.   +.+|..+.+..++.+..++|.++-.+++..|+.+++...+.+++++..   .++++.+.|+.+|+|||.+|++|
T Consensus        97 ~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RPrYp  176 (503)
T KOG4716|consen   97 VDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPRYP  176 (503)
T ss_pred             CccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCCCCC
Confidence            876   789999999999999999999888899989999999999999998876   45567889999999999999999


Q ss_pred             CCCCCccceeec--ccC-CCCCCcEEEe
Q psy7665         267 DIPGARLLRTLS--LLS-GVDPPTLIFL  291 (296)
Q Consensus       267 ~i~G~~~~~~~s--~~~-~~~~~~~~~~  291 (296)
                      +|||..++.++|  +|+ .+.|.+-+++
T Consensus       177 ~IpG~~Ey~ITSDDlFsl~~~PGkTLvV  204 (503)
T KOG4716|consen  177 DIPGAKEYGITSDDLFSLPYEPGKTLVV  204 (503)
T ss_pred             CCCCceeeeecccccccccCCCCceEEE
Confidence            999999999998  455 4445554444

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=99.94  E-value=9.3e-26  Score=205.47  Aligned_cols=173  Identities=37%  Similarity=0.562  Sum_probs=150.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhccc-ccCcc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSD-NFGFH  192 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~g~~  192 (296)
                      ..||++|||+||+|..+|.++++.|.+|+++|  +..      .+||+|.|.||+|++.+.+.+.......... .+|+.
T Consensus         3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE--~~~------~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~   74 (454)
T COG1249           3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVE--KGE------RLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGIS   74 (454)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCEEEEe--ecC------CcCceEEeeCccccHHHHHHHHHHHHHhhccccccee
Confidence            57899999999999999999999999999999  554      6999999999999999999999888877765 68888


Q ss_pred             ccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcc-eeEEEEeCeEEEcCCCCCCCCCCCC
Q psy7665         193 MKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAG-EERTVSAQNFIIAVGGRPTYPDIPG  270 (296)
Q Consensus       193 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g-~~~~~~a~~vV~AtG~~p~~p~i~G  270 (296)
                      ... .++|.++..+.+...+.+...+...++.++|+++.+++.+.++++|.+++ +.+++.++++|+|||++|+.|++||
T Consensus        75 ~~~~~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~  154 (454)
T COG1249          75 AEVPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPGPG  154 (454)
T ss_pred             cCCCCcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCCC
Confidence            876 69999999999997777777888888888999999999999999999933 3478999999999999999999998


Q ss_pred             Ccc-ceeec---ccCCCCCCcEEEeecc
Q psy7665         271 ARL-LRTLS---LLSGVDPPTLIFLEHI  294 (296)
Q Consensus       271 ~~~-~~~~s---~~~~~~~~~~~~~~~~  294 (296)
                      .+. .+++|   ++..+.|++++|++++
T Consensus       155 ~~~~~~~~s~~~l~~~~lP~~lvIiGgG  182 (454)
T COG1249         155 IDGARILDSSDALFLLELPKSLVIVGGG  182 (454)
T ss_pred             CCCCeEEechhhcccccCCCEEEEECCC
Confidence            874 35555   4556889999999864

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=99.93  E-value=2.1e-24  Score=200.72  Aligned_cols=180  Identities=52%  Similarity=0.868  Sum_probs=147.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK  194 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~  194 (296)
                      .|||+||||||+|+.+|..+++.|++|+++|+..+.+.++++.+||+|.|++|+|++++.+.+...........+|+...
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~   81 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE   81 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence            47999999999999999999999999999993223333455578999999999999999998887777666677787653


Q ss_pred             c--cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCCCCCC
Q psy7665         195 K--SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIP  269 (296)
Q Consensus       195 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~p~i~  269 (296)
                      .  .++|..+.++.+...+.+...+...++..+|+++.+.+.+.+++++.+   +++...+.+|+||+|||++|+.|++|
T Consensus        82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p~ip  161 (484)
T TIGR01438        82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPGIP  161 (484)
T ss_pred             CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCCCCCCC
Confidence            3  679999999999998888777778888899999999999988888887   34345799999999999999999999


Q ss_pred             CCccceeec--ccCC-CCCCcEEEeecc
Q psy7665         270 GARLLRTLS--LLSG-VDPPTLIFLEHI  294 (296)
Q Consensus       270 G~~~~~~~s--~~~~-~~~~~~~~~~~~  294 (296)
                      |.++...++  .+.. ..|++++||+++
T Consensus       162 G~~~~~~~~~~~~~~~~~~~~vvIIGgG  189 (484)
T TIGR01438       162 GAKELCITSDDLFSLPYCPGKTLVVGAS  189 (484)
T ss_pred             CccceeecHHHhhcccccCCCEEEECCC
Confidence            986655555  3333 356778888764

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PTZ00058 glutathione reductase; Provisional

Probab=99.92  E-value=2.9e-24  Score=201.81  Aligned_cols=172  Identities=37%  Similarity=0.675  Sum_probs=143.3

Q ss_pred             CCccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCc
Q psy7665         112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGF  191 (296)
Q Consensus       112 ~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~  191 (296)
                      .+.+|||+||||||+|+.||..+++.|.+|+|+|  + .      .+||+|.|+||+|++.+.+.+...........+|+
T Consensus        45 ~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIE--k-~------~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi  115 (561)
T PTZ00058         45 PRMVYDLIVIGGGSGGMAAARRAARNKAKVALVE--K-D------YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGF  115 (561)
T ss_pred             CCccccEEEECcCHHHHHHHHHHHHcCCeEEEEe--c-c------cccccccccCCCCCchhhhhcccHHHHHHHHhcCC
Confidence            3467999999999999999999999999999999  3 2      79999999999999999998888887777777887


Q ss_pred             cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE----------------------------
Q psy7665         192 HMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF----------------------------  243 (296)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v----------------------------  243 (296)
                      .....++|..+.++.+...+.+...+...+++.||+++.+++.+.++++|.+                            
T Consensus       116 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~  195 (561)
T PTZ00058        116 DTQFSFNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQL  195 (561)
T ss_pred             CccCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceec
Confidence            6433679999999988888888777788888899999999998887777642                            


Q ss_pred             cceeEEEEeCeEEEcCCCCCCCCCCCCCccceeec--ccCCCCCCcEEEeecc
Q psy7665         244 AGEERTVSAQNFIIAVGGRPTYPDIPGARLLRTLS--LLSGVDPPTLIFLEHI  294 (296)
Q Consensus       244 ~g~~~~~~a~~vV~AtG~~p~~p~i~G~~~~~~~s--~~~~~~~~~~~~~~~~  294 (296)
                      ++ ...+.||+||+|||++|..|++||.+ +++++  ++....|++++|++++
T Consensus       196 ~~-g~~i~ad~lVIATGS~P~~P~IpG~~-~v~ts~~~~~l~~pk~VvIIGgG  246 (561)
T PTZ00058        196 DD-GQVIEGKNILIAVGNKPIFPDVKGKE-FTISSDDFFKIKEAKRIGIAGSG  246 (561)
T ss_pred             CC-CcEEECCEEEEecCCCCCCCCCCCce-eEEEHHHHhhccCCCEEEEECCc
Confidence            12 14699999999999999999999974 45555  3444458889998764

>PLN02546 glutathione reductase

Probab=99.92  E-value=3.4e-24  Score=201.35  Aligned_cols=177  Identities=35%  Similarity=0.616  Sum_probs=147.0

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC---CCCcccccCCeeeccCCCchhHHHHhhhhHHHhhccccc
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS---QHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNF  189 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~---~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  189 (296)
                      ..+|||+||||||+|+.+|..+++.|++|+|+|  ++-   +.+.+..+||+|.|+||+|++.+.+.............+
T Consensus        77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE--~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~  154 (558)
T PLN02546         77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCE--LPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGF  154 (558)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEe--ccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhc
Confidence            356899999999999999999999999999999  421   112223789999999999999999999888888878888


Q ss_pred             Ccccc-c-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCCCCCCC
Q psy7665         190 GFHMK-K-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD  267 (296)
Q Consensus       190 g~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~p~~p~  267 (296)
                      |+... . .++|..+..+.+...+++...+...+++.+|+++.++..+.+.+.+.++|  ..+.||+||+|||++|..|+
T Consensus       155 g~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v~G--~~~~~D~LVIATGs~p~~P~  232 (558)
T PLN02546        155 GWKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDVDG--KLYTARNILIAVGGRPFIPD  232 (558)
T ss_pred             CcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEECC--EEEECCEEEEeCCCCCCCCC
Confidence            88653 2 78999999999999999888888889999999999988888888888877  57999999999999999999


Q ss_pred             CCCCccceeec--cc-CCCCCCcEEEeecc
Q psy7665         268 IPGARLLRTLS--LL-SGVDPPTLIFLEHI  294 (296)
Q Consensus       268 i~G~~~~~~~s--~~-~~~~~~~~~~~~~~  294 (296)
                      +||.+. +.++  .+ ....+++++||+++
T Consensus       233 IpG~~~-v~~~~~~l~~~~~~k~V~VIGgG  261 (558)
T PLN02546        233 IPGIEH-AIDSDAALDLPSKPEKIAIVGGG  261 (558)
T ss_pred             CCChhh-ccCHHHHHhccccCCeEEEECCC
Confidence            999753 4444  22 23457788888764

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=99.92  E-value=1.5e-23  Score=193.85  Aligned_cols=168  Identities=36%  Similarity=0.649  Sum_probs=140.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK  194 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~  194 (296)
                      +|||+||||||+|++||.+++++|++|+|+|  + +      .+||+|.+.+|+|++.+.+.....+.......+|+...
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie--~-~------~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~   72 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAE--E-P------RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVG   72 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEe--c-C------ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCC
Confidence            5899999999999999999999999999999  4 3      78999999999999999999988888887788887654


Q ss_pred             c-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE--cceeEEEEeCeEEEcCCCCCCCCCCCCC
Q psy7665         195 K-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF--AGEERTVSAQNFIIAVGGRPTYPDIPGA  271 (296)
Q Consensus       195 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v--~g~~~~~~a~~vV~AtG~~p~~p~i~G~  271 (296)
                      . .++|..+..+.+.....+...+...++..+++++.+++...+.+.+.+  ++  ..+.||+||+|||++|..|++||.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g--~~~~~d~lIiATGs~p~~p~i~G~  150 (446)
T TIGR01424        73 KARFDWKKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDG--TTYTAKKILIAVGGRPQKPNLPGH  150 (446)
T ss_pred             CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCC--eEEEcCEEEEecCCcCCCCCCCCc
Confidence            4 789999999988888888777888888999999998887777777776  44  578999999999999999999997


Q ss_pred             ccceeec--ccC-CCCCCcEEEeecc
Q psy7665         272 RLLRTLS--LLS-GVDPPTLIFLEHI  294 (296)
Q Consensus       272 ~~~~~~s--~~~-~~~~~~~~~~~~~  294 (296)
                      +. ..++  .+. ...+++++|++++
T Consensus       151 ~~-~~~~~~~~~l~~~~~~vvVIGgG  175 (446)
T TIGR01424       151 EL-GITSNEAFHLPTLPKSILILGGG  175 (446)
T ss_pred             cc-eechHHhhcccccCCeEEEECCc
Confidence            53 3333  222 2356778888654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=99.91  E-value=2.2e-23  Score=192.74  Aligned_cols=168  Identities=41%  Similarity=0.724  Sum_probs=140.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK  194 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~  194 (296)
                      .|||+||||||+|++||.++++.|++|+|+|  + +      .+||+|.+++|+|++.+++.............+|++..
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE--~-~------~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~   72 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGAKALLVE--A-K------KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQN   72 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEec--c-c------ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccC
Confidence            4899999999999999999999999999999  4 3      78999999999999999998888887777777887654


Q ss_pred             c--cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCCCCCC-CCCCC
Q psy7665         195 K--SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYP-DIPGA  271 (296)
Q Consensus       195 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~p~~p-~i~G~  271 (296)
                      .  ..+|..+..+.+.+.+.+...+...++..+|+++.++..+.+++.|.+++  ..+.||+||+|||++|+.| ++||.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~--~~~~~d~vIiAtGs~p~~p~~i~g~  150 (450)
T TIGR01421        73 LENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEVNG--RDYTAPHILIATGGKPSFPENIPGA  150 (450)
T ss_pred             CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECC--EEEEeCEEEEecCCCCCCCCCCCCC
Confidence            2  57899999988888888877778888889999999888777777787776  5699999999999999999 89997


Q ss_pred             ccceeec--ccCC-CCCCcEEEeecc
Q psy7665         272 RLLRTLS--LLSG-VDPPTLIFLEHI  294 (296)
Q Consensus       272 ~~~~~~s--~~~~-~~~~~~~~~~~~  294 (296)
                      +. ..++  ++.. ..|++++|++++
T Consensus       151 ~~-~~~~~~~~~~~~~~~~vvIIGgG  175 (450)
T TIGR01421       151 EL-GTDSDGFFALEELPKRVVIVGAG  175 (450)
T ss_pred             ce-eEcHHHhhCccccCCeEEEECCC
Confidence            53 2333  3332 356778888764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>KOG0405|consensus

Probab=99.91  E-value=6.6e-24  Score=180.41  Aligned_cols=171  Identities=40%  Similarity=0.738  Sum_probs=149.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      .+||.+|||||..|+.+|+++++.|.+|.|+|  .+-      .+||+|.+.||+|++.+++.+.+.........|||+.
T Consensus        19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E--~~f------~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~   90 (478)
T KOG0405|consen   19 KDFDYLVIGGGSGGVASARRAASHGAKVALCE--LPF------GLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPI   90 (478)
T ss_pred             cccceEEEcCCcchhHHhHHHHhcCceEEEEe--cCC------CcCceEEeeccccceeEEehhhhhHHhhhhhhcCCcc
Confidence            57999999999999999999999999999999  554      7899999999999999999999999999999999998


Q ss_pred             cc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCCCCC
Q psy7665         194 KK--SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDI  268 (296)
Q Consensus       194 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~p~i  268 (296)
                      +.  .++|..+.+..+.+..++.-.+...+.+.+|+++.+++.+.++..+.+   ++....|.++++++|+|++|..|+|
T Consensus        91 ~~~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnI  170 (478)
T KOG0405|consen   91 NEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNI  170 (478)
T ss_pred             ccccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCCCC
Confidence            65  899999999999999999988888899999999999999988887776   4544568999999999999999999


Q ss_pred             CCCccceeec--ccC-CCCCCcEEEeec
Q psy7665         269 PGARLLRTLS--LLS-GVDPPTLIFLEH  293 (296)
Q Consensus       269 ~G~~~~~~~s--~~~-~~~~~~~~~~~~  293 (296)
                      ||. ++-++|  +|+ +..|++.++++.
T Consensus       171 pG~-E~gidSDgff~Lee~Pkr~vvvGa  197 (478)
T KOG0405|consen  171 PGA-ELGIDSDGFFDLEEQPKRVVVVGA  197 (478)
T ss_pred             Cch-hhccccccccchhhcCceEEEEcc
Confidence            998 445555  455 455666666654

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.91  E-value=3.7e-23  Score=192.24  Aligned_cols=173  Identities=26%  Similarity=0.371  Sum_probs=141.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..|||+||||||+|+.+|.+|++.|++|+|+|  +.+      .+||+|.+.+|+|++.+.+.............+|+..
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie--~~~------~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~   74 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVE--RYS------TLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVF   74 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCcEEEEe--cCC------cccccccCCCcccHHHHHHHHHHHHHHhhhhhcCccc
Confidence            35899999999999999999999999999999  555      7899999999999999998888777777777788866


Q ss_pred             cc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCC-CCC
Q psy7665         194 KK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTY-PDI  268 (296)
Q Consensus       194 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~-p~i  268 (296)
                      .. .++|..+..+.+...+.+...+...++..+|+++.+++.+.+.+.+.+   +|+..++.||+||+|||++|.. |.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~  154 (471)
T PRK06467         75 GEPKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFI  154 (471)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCC
Confidence            54 789999999888888887777777888899999999888888888777   2333579999999999999974 556


Q ss_pred             CCCccceeec--ccCC-CCCCcEEEeecc
Q psy7665         269 PGARLLRTLS--LLSG-VDPPTLIFLEHI  294 (296)
Q Consensus       269 ~G~~~~~~~s--~~~~-~~~~~~~~~~~~  294 (296)
                      ++..+.++++  .+.. ..|++++|++++
T Consensus       155 ~~~~~~v~~~~~~~~~~~~~~~vvIiGgG  183 (471)
T PRK06467        155 PHDDPRIWDSTDALELKEVPKRLLVMGGG  183 (471)
T ss_pred             CCCCCcEEChHHhhccccCCCeEEEECCC
Confidence            7765556665  2333 356778888764

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=99.91  E-value=2.3e-23  Score=193.60  Aligned_cols=180  Identities=30%  Similarity=0.501  Sum_probs=142.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC-CCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASM-NKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFH  192 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~-G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~  192 (296)
                      ..|||+||||||+|..||..++++ |.+|+|+|+.+....+++..+||+|.|+||+|++.+++.+...........+|+.
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~   81 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE   81 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence            358999999999999999999997 9999999932111111122799999999999999999999888888777778876


Q ss_pred             cc--c-cCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CcEEEcceEEEEeCCEEEEcc-------eeEEEEeCeEEEcCCC
Q psy7665         193 MK--K-SFTWKTLVDNVQKYIRNLNNNYEKELEKN-KIDYFNAKAVFVDKHRVKFAG-------EERTVSAQNFIIAVGG  261 (296)
Q Consensus       193 ~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~v~v~g-------~~~~~~a~~vV~AtG~  261 (296)
                      ..  . .++|..+.++.+.....+...+...+++. +++++.+++.+.++++|.++.       ....+.||+||+|||+
T Consensus        82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIATGs  161 (486)
T TIGR01423        82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLATGS  161 (486)
T ss_pred             ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEecCC
Confidence            43  2 68999999999998888887777778774 999999999998888888821       1357999999999999


Q ss_pred             CCCCCCCCCCccceeec--ccCC-CCCCcEEEeecc
Q psy7665         262 RPTYPDIPGARLLRTLS--LLSG-VDPPTLIFLEHI  294 (296)
Q Consensus       262 ~p~~p~i~G~~~~~~~s--~~~~-~~~~~~~~~~~~  294 (296)
                      +|..|++||.+. +.++  .+.. ..|++++||+++
T Consensus       162 ~p~~p~i~G~~~-~~~~~~~~~~~~~~~~vvIIGgG  196 (486)
T TIGR01423       162 WPQMLGIPGIEH-CISSNEAFYLDEPPRRVLTVGGG  196 (486)
T ss_pred             CCCCCCCCChhh-eechhhhhccccCCCeEEEECCC
Confidence            999999999754 3443  2222 456778888654

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PTZ00052 thioredoxin reductase; Provisional

Probab=99.91  E-value=3.5e-23  Score=193.46  Aligned_cols=180  Identities=48%  Similarity=0.848  Sum_probs=142.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhh-cccccCccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEAT-TSDNFGFHM  193 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~g~~~  193 (296)
                      .|||+||||||+|+.||.+++++|++|+|+|+.++...+.++.+||+|.+.+|+|++.+.+......... ....||+..
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~   84 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKT   84 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCC
Confidence            5899999999999999999999999999999322223445556999999999999999888777666554 345677764


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE-c-ceeEEEEeCeEEEcCCCCCCCCC-CCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF-A-GEERTVSAQNFIIAVGGRPTYPD-IPG  270 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v-~-g~~~~~~a~~vV~AtG~~p~~p~-i~G  270 (296)
                      ....+|..+.++.+...+.+...+...++..+|+++.+++.+.+.+.|.+ + ++...+.||+||+|||++|..|. +||
T Consensus        85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~~i~G  164 (499)
T PTZ00052         85 SSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSIPEDVPG  164 (499)
T ss_pred             CCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCCCCCCCCCCCC
Confidence            33689999999999988888777777777789999999888888888887 2 33357999999999999999885 999


Q ss_pred             Cccceeec--ccC-CCCCCcEEEeecc
Q psy7665         271 ARLLRTLS--LLS-GVDPPTLIFLEHI  294 (296)
Q Consensus       271 ~~~~~~~s--~~~-~~~~~~~~~~~~~  294 (296)
                      .++...++  .+. ...|++++|++++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~vvIIGgG  191 (499)
T PTZ00052        165 AKEYSITSDDIFSLSKDPGKTLIVGAS  191 (499)
T ss_pred             ccceeecHHHHhhhhcCCCeEEEECCC
Confidence            87666665  333 2356778888764

>PRK06370 mercuric reductase; Validated

Probab=99.91  E-value=4.3e-23  Score=191.75  Aligned_cols=170  Identities=29%  Similarity=0.452  Sum_probs=141.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..|||+||||||+|++||.+|++.|++|+|+|  + .      .+||+|.+.+|+|++.+++.............+|++.
T Consensus         4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie--~-~------~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~   74 (463)
T PRK06370          4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIE--R-G------LLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSV   74 (463)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEe--c-C------ccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCccc
Confidence            45899999999999999999999999999999  3 2      7899999999999999999988888887778888875


Q ss_pred             c--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCCCCCCCCCC
Q psy7665         194 K--KSFTWKTLVDNVQKYIRNLNNNYEKELEKN-KIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG  270 (296)
Q Consensus       194 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~p~~p~i~G  270 (296)
                      .  ..++|..+.++.+...+.+...+...+++. +++++.++..+.+.+.+.+++  ..+.+|+||+|||++|+.|++||
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v~~--~~~~~d~lViATGs~p~~p~i~G  152 (463)
T PRK06370         75 GGPVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRVGG--ETLRAKRIFINTGARAAIPPIPG  152 (463)
T ss_pred             CccCccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEECc--EEEEeCEEEEcCCCCCCCCCCCC
Confidence            3  278999999988888877666677778877 999998888777778888866  57899999999999999999999


Q ss_pred             Ccc-ceeec--ccC-CCCCCcEEEeecc
Q psy7665         271 ARL-LRTLS--LLS-GVDPPTLIFLEHI  294 (296)
Q Consensus       271 ~~~-~~~~s--~~~-~~~~~~~~~~~~~  294 (296)
                      .+. .++++  .+. ...|++++|++++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~vvVIGgG  180 (463)
T PRK06370        153 LDEVGYLTNETIFSLDELPEHLVIIGGG  180 (463)
T ss_pred             CCcCceEcchHhhCccccCCEEEEECCC
Confidence            864 34444  232 2457788888754

>PRK06116 glutathione reductase; Validated

Probab=99.91  E-value=7e-23  Score=189.75  Aligned_cols=168  Identities=42%  Similarity=0.756  Sum_probs=136.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhc-ccccCccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATT-SDNFGFHM  193 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~g~~~  193 (296)
                      .|||+||||||+|++||.+|+++|++|+|+|  + .      .+||+|.+.+|+|++.+.+.....+.... ...+|+..
T Consensus         4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE--~-~------~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~   74 (450)
T PRK06116          4 DYDLIVIGGGSGGIASANRAAMYGAKVALIE--A-K------RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDV   74 (450)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEe--c-c------chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCC
Confidence            5899999999999999999999999999999  3 2      78999999999999999988877666655 44566654


Q ss_pred             cc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCCCCCCCCCCCc
Q psy7665         194 KK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAR  272 (296)
Q Consensus       194 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~p~~p~i~G~~  272 (296)
                      .. .++|..+.++.+...+.+...+...+.+.+|+++.+++.+.+.+.|++++  ..+.||+||+|||++|+.|++||.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~~g--~~~~~d~lViATGs~p~~p~i~g~~  152 (450)
T PRK06116         75 TENKFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEVNG--ERYTADHILIATGGRPSIPDIPGAE  152 (450)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECC--EEEEeCEEEEecCCCCCCCCCCCcc
Confidence            33 67899998888887777777777778888999999888777788888865  5799999999999999999999975


Q ss_pred             cceeec--ccC-CCCCCcEEEeecc
Q psy7665         273 LLRTLS--LLS-GVDPPTLIFLEHI  294 (296)
Q Consensus       273 ~~~~~s--~~~-~~~~~~~~~~~~~  294 (296)
                      . +.++  .+. ...+++++|++++
T Consensus       153 ~-~~~~~~~~~~~~~~~~vvViGgG  176 (450)
T PRK06116        153 Y-GITSDGFFALEELPKRVAVVGAG  176 (450)
T ss_pred             e-eEchhHhhCccccCCeEEEECCC
Confidence            3 3443  232 3456778888754

>PLN02507 glutathione reductase

Probab=99.90  E-value=9.4e-23  Score=190.43  Aligned_cols=181  Identities=32%  Similarity=0.599  Sum_probs=142.6

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCCcEEEEeccC-CCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCc
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVT-PSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGF  191 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~-~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~  191 (296)
                      ..+|||+||||||+|+.+|.++++.|++|+|+|+.. ..+-+.+..+||+|.+.||+|++.+.+.+...........+|+
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~  102 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW  102 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence            357899999999999999999999999999999311 1111222379999999999999999998888777777777887


Q ss_pred             cccc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCCC
Q psy7665         192 HMKK--SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYP  266 (296)
Q Consensus       192 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~p  266 (296)
                      ....  .++|..+.++.....+.+...+...+...+|+++.+++.+.+.+.+.+   +|+...+.||+||+|||++|..|
T Consensus       103 ~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p~~p  182 (499)
T PLN02507        103 EINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRAQRP  182 (499)
T ss_pred             ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCCCCC
Confidence            6532  689999998888888888777778888899999999888888877776   44345789999999999999999


Q ss_pred             CCCCCccceeec--ccC-CCCCCcEEEeecc
Q psy7665         267 DIPGARLLRTLS--LLS-GVDPPTLIFLEHI  294 (296)
Q Consensus       267 ~i~G~~~~~~~s--~~~-~~~~~~~~~~~~~  294 (296)
                      ++||.+. ..++  .+. ...+++++|++++
T Consensus       183 ~ipG~~~-~~~~~~~~~l~~~~k~vvVIGgG  212 (499)
T PLN02507        183 NIPGKEL-AITSDEALSLEELPKRAVVLGGG  212 (499)
T ss_pred             CCCCccc-eechHHhhhhhhcCCeEEEECCc
Confidence            9999743 3333  222 2346778888754

>TIGR02053 MerA mercuric reductase

Probab=99.90  E-value=4.2e-22  Score=185.19  Aligned_cols=169  Identities=33%  Similarity=0.558  Sum_probs=133.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKK  195 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~  195 (296)
                      |||+||||||+|+.+|.+++++|++|+|+|  +.       .+||+|.+.+|+|++.+.+.....+..... .+|+....
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie--~~-------~~GG~c~n~gciPsk~l~~~~~~~~~~~~~-~~g~~~~~   70 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVE--RG-------PLGGTCVNVGCVPSKMLLRAAEVAHYARKP-PFGGLAAT   70 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEe--CC-------cccCCeeeecEEccHHHHHHHHHHHHhhcc-CcccccCC
Confidence            699999999999999999999999999999  32       689999999999999999888777766553 36664433


Q ss_pred             -cCCHHHHHHHHHHHHHHHHH-HHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCCCCCCCCCCCcc
Q psy7665         196 -SFTWKTLVDNVQKYIRNLNN-NYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGARL  273 (296)
Q Consensus       196 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~p~~p~i~G~~~  273 (296)
                       .++|..+..+.+.....+.. .+...+++.+++++.+++.+.+.+.+.++++...+.+|+||+|||++|..|++||.+.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~G~~~  150 (463)
T TIGR02053        71 VAVDFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLKE  150 (463)
T ss_pred             CccCHHHHHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCCCCCCCCCCCccc
Confidence             77898888888777776654 2556678889999998888877888888432346889999999999999999999864


Q ss_pred             c-eeec--ccC-CCCCCcEEEeecc
Q psy7665         274 L-RTLS--LLS-GVDPPTLIFLEHI  294 (296)
Q Consensus       274 ~-~~~s--~~~-~~~~~~~~~~~~~  294 (296)
                      . ++++  .+. ...|++++|++.+
T Consensus       151 ~~~~~~~~~~~~~~~~~~vvIIGgG  175 (463)
T TIGR02053       151 AGYLTSEEALALDRIPESLAVIGGG  175 (463)
T ss_pred             CceECchhhhCcccCCCeEEEECCC
Confidence            3 4444  222 2346778888654

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK14727 putative mercuric reductase; Provisional

Probab=99.89  E-value=6.5e-22  Score=184.38  Aligned_cols=173  Identities=29%  Similarity=0.480  Sum_probs=135.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..|||+||||||+|+.+|..|++.|.+|+++|  +.+      .+||+|.+++|+|++.+++.....+......++|++.
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie--~~~------~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~   86 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIE--GAD------VIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEA   86 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEE--ccC------cceeEeccccccccHHHHHHHHHHHHHhhccccCccc
Confidence            56899999999999999999999999999999  555      7899999999999999999888877776666677764


Q ss_pred             cc-cCCHHHHHHHHHHHHHHHHH-HHHHHHHHC-CcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCCCC
Q psy7665         194 KK-SFTWKTLVDNVQKYIRNLNN-NYEKELEKN-KIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPD  267 (296)
Q Consensus       194 ~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~p~  267 (296)
                      .. .++|..+..+.+.....+.. .+...++.. +++++.+++.+.+.+.+.+   +++..++.||+||+|||++|..|+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~  166 (479)
T PRK14727         87 VAPSIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPP  166 (479)
T ss_pred             CCCccCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCC
Confidence            33 67788887777766665543 244555554 8999999998888887776   343357999999999999999999


Q ss_pred             CCCCccc-eeec---ccCCCCCCcEEEeecc
Q psy7665         268 IPGARLL-RTLS---LLSGVDPPTLIFLEHI  294 (296)
Q Consensus       268 i~G~~~~-~~~s---~~~~~~~~~~~~~~~~  294 (296)
                      +||.++. .+++   +.....|++++||+.+
T Consensus       167 i~G~~~~~~~~~~~~l~~~~~~k~vvVIGgG  197 (479)
T PRK14727        167 IPGLMDTPYWTSTEALFSDELPASLTVIGSS  197 (479)
T ss_pred             CCCcCccceecchHHhccccCCCeEEEECCC
Confidence            9997532 2333   2333457788888764

>PRK07846 mycothione reductase; Reviewed

Probab=99.89  E-value=3.1e-22  Score=185.00  Aligned_cols=167  Identities=26%  Similarity=0.498  Sum_probs=134.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK  194 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~  194 (296)
                      +||++||||||+|..+|..  ..|.+|+|+|  + +      .+||+|.|+||+|++.+.+.+...........+|+...
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie--~-~------~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~   69 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADKRIAIVE--K-G------TFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAE   69 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCCeEEEEe--C-C------CCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCC
Confidence            3799999999999999866  4699999999  3 2      78999999999999999999998888887778888644


Q ss_pred             c-cCCHHHHHHHHHHHHHHHHHH-HHHH-HHHCCcEEEcceEEEEeCCEEEE-cceeEEEEeCeEEEcCCCCCCCCCCCC
Q psy7665         195 K-SFTWKTLVDNVQKYIRNLNNN-YEKE-LEKNKIDYFNAKAVFVDKHRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPG  270 (296)
Q Consensus       195 ~-~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~v~~~~~~~~~~~~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~i~G  270 (296)
                      . .++|..+.++.....+++... .... ++..+++++.+++.+.++++|++ ++  ..+.||+||+|||++|+.|++||
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~~g--~~~~~d~lViATGs~p~~p~i~g  147 (451)
T PRK07846         70 LDGVRWPDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTGDG--EEITADQVVIAAGSRPVIPPVIA  147 (451)
T ss_pred             CCcCCHHHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEECCC--CEEEeCEEEEcCCCCCCCCCCCC
Confidence            3 789999999888877776442 3344 67789999999998888899998 45  47899999999999999999999


Q ss_pred             Cccc-eeec--ccC-CCCCCcEEEeecc
Q psy7665         271 ARLL-RTLS--LLS-GVDPPTLIFLEHI  294 (296)
Q Consensus       271 ~~~~-~~~s--~~~-~~~~~~~~~~~~~  294 (296)
                      .+.. +.++  .+. ...|++++|++.+
T Consensus       148 ~~~~~~~~~~~~~~l~~~~~~vvIIGgG  175 (451)
T PRK07846        148 DSGVRYHTSDTIMRLPELPESLVIVGGG  175 (451)
T ss_pred             cCCccEEchHHHhhhhhcCCeEEEECCC
Confidence            6533 3333  222 2357788888754

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.89  E-value=1.3e-21  Score=182.31  Aligned_cols=172  Identities=29%  Similarity=0.487  Sum_probs=134.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..|||+||||||+|+++|.+|++.|++|+|+|  + .      .+||+|.+.+|+|++.+...............+|+..
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie--~-~------~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~   73 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVE--K-G------KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISV   73 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEE--c-c------CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccC
Confidence            46899999999999999999999999999999  3 2      7899999999999999999888777766667777764


Q ss_pred             cc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCC-------EEEE---cceeEEEEeCeEEEcCCCC
Q psy7665         194 KK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKH-------RVKF---AGEERTVSAQNFIIAVGGR  262 (296)
Q Consensus       194 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~v~v---~g~~~~~~a~~vV~AtG~~  262 (296)
                      .. .++|..+..+.+...+.+...+...+++.+++++.+++.+.+.+       .+.+   +|+...+.||+||+|||++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~  153 (472)
T PRK05976         74 SGPALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSR  153 (472)
T ss_pred             CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCC
Confidence            43 67899998888888777766677778888999999988887766       6666   3333679999999999999


Q ss_pred             CCCCC-CCCCccceeecc--cC-CCCCCcEEEeecc
Q psy7665         263 PTYPD-IPGARLLRTLSL--LS-GVDPPTLIFLEHI  294 (296)
Q Consensus       263 p~~p~-i~G~~~~~~~s~--~~-~~~~~~~~~~~~~  294 (296)
                      |..|+ ++....+++++.  +. ...|+++++++++
T Consensus       154 p~~~p~~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG  189 (472)
T PRK05976        154 PVELPGLPFDGEYVISSDEALSLETLPKSLVIVGGG  189 (472)
T ss_pred             CCCCCCCCCCCceEEcchHhhCccccCCEEEEECCC
Confidence            86543 332223455542  22 2346788888764

>PRK14694 putative mercuric reductase; Provisional

Probab=99.89  E-value=8.5e-22  Score=183.21  Aligned_cols=173  Identities=29%  Similarity=0.500  Sum_probs=131.7

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhccc-ccCc
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSD-NFGF  191 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~g~  191 (296)
                      ...|||+||||||+|+.+|.+|++.|++|+|||  + .      .+||+|.+.||+|++.+.+............ .+|+
T Consensus         4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie--~-~------~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~   74 (468)
T PRK14694          4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIE--R-G------TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGL   74 (468)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEE--c-c------ccccceecCCccccHHHHHHHHHHHHHhhccccCCc
Confidence            357899999999999999999999999999999  3 2      7899999999999999998888777665544 3566


Q ss_pred             cccc-cCCHHHHHHHHHHHHHHHHHH-HHHHHHHC-CcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCC
Q psy7665         192 HMKK-SFTWKTLVDNVQKYIRNLNNN-YEKELEKN-KIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTY  265 (296)
Q Consensus       192 ~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~  265 (296)
                      +... .++|..+..+.+.....+... ....+... +++++.+++.+++...+.+   +++..++.||+||+|||++|..
T Consensus        75 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~  154 (468)
T PRK14694         75 SAQAPVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAE  154 (468)
T ss_pred             ccCCCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCC
Confidence            5332 678999988888776665443 33445443 8999999887776655554   4434579999999999999999


Q ss_pred             CCCCCCccc-eeecc--cC-CCCCCcEEEeecc
Q psy7665         266 PDIPGARLL-RTLSL--LS-GVDPPTLIFLEHI  294 (296)
Q Consensus       266 p~i~G~~~~-~~~s~--~~-~~~~~~~~~~~~~  294 (296)
                      |++||.++. ..++.  +. ...+++++|++.+
T Consensus       155 p~i~G~~~~~~~~~~~~~~l~~~~~~vvViG~G  187 (468)
T PRK14694        155 PPVPGLAETPYLTSTSALELDHIPERLLVIGAS  187 (468)
T ss_pred             CCCCCCCCCceEcchhhhchhcCCCeEEEECCC
Confidence            999998643 33432  22 2346778888754

>KOG1335|consensus

Probab=99.89  E-value=6.8e-22  Score=170.14  Aligned_cols=172  Identities=34%  Similarity=0.539  Sum_probs=143.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhc--ccccCc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATT--SDNFGF  191 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~g~  191 (296)
                      .+|||+|||+||.|..||.+++++|++++.+|  ++.      .+||+|.+.||+|++.+...+++.+....  +...|+
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvE--kr~------~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi  109 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVE--KRG------TLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGI  109 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEe--ccC------ccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCc
Confidence            46899999999999999999999999999999  666      89999999999999999988887776554  556677


Q ss_pred             cccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCC-CCCC
Q psy7665         192 HMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGR-PTYP  266 (296)
Q Consensus       192 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~-p~~p  266 (296)
                      .... .++.+.+.......+..+...+...|++++|+.+.+...+.+++.|.+   +++...+.++++|+|||+. +..|
T Consensus       110 ~vs~~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~P  189 (506)
T KOG1335|consen  110 DVSSVSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPFP  189 (506)
T ss_pred             cccceecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCccCCCC
Confidence            7665 889999999999999999999999999999999999999999999988   6667899999999999983 3334


Q ss_pred             CCCCCccceeecc--cCC-CCCCcEEEeec
Q psy7665         267 DIPGARLLRTLSL--LSG-VDPPTLIFLEH  293 (296)
Q Consensus       267 ~i~G~~~~~~~s~--~~~-~~~~~~~~~~~  293 (296)
                      .|.=.++-+++|.  +++ +.|+++.+++.
T Consensus       190 GI~IDekkIVSStgALsL~~vPk~~~viG~  219 (506)
T KOG1335|consen  190 GITIDEKKIVSSTGALSLKEVPKKLTVIGA  219 (506)
T ss_pred             CeEecCceEEecCCccchhhCcceEEEEcC
Confidence            4433447788873  444 45566777654

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=99.89  E-value=1.3e-21  Score=186.39  Aligned_cols=172  Identities=28%  Similarity=0.374  Sum_probs=138.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcc---cccC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTS---DNFG  190 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~---~~~g  190 (296)
                      .+|||+|||+||+|..+|..+++.|.+|+|||+. ..      .+||+|.++||+|++.+++.+.........   ..||
T Consensus       115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~-~~------~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~G  187 (659)
T PTZ00153        115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD-DD------SIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYG  187 (659)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC-CC------ccccceeEeCCcchHHHHHHHHHHHHHHhccccccCC
Confidence            4789999999999999999999999999999921 22      689999999999999999998887777654   3567


Q ss_pred             ccc------------------cc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-------cEEEcceEEEEeCCEEEE-
Q psy7665         191 FHM------------------KK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNK-------IDYFNAKAVFVDKHRVKF-  243 (296)
Q Consensus       191 ~~~------------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~~~~v~v-  243 (296)
                      +..                  .. .++|..+.++.+...+.+...+...+++.+       ++++.+.+.+.++++|.+ 
T Consensus       188 i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~  267 (659)
T PTZ00153        188 IYTNAFKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSE  267 (659)
T ss_pred             eeeccccccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEc
Confidence            651                  12 679999999999999988877777787765       889999988888888887 


Q ss_pred             -cceeEEEEeCeEEEcCCCCCCCCCCCCCc-cceeecc--cCC-CCCCcEEEeecc
Q psy7665         244 -AGEERTVSAQNFIIAVGGRPTYPDIPGAR-LLRTLSL--LSG-VDPPTLIFLEHI  294 (296)
Q Consensus       244 -~g~~~~~~a~~vV~AtG~~p~~p~i~G~~-~~~~~s~--~~~-~~~~~~~~~~~~  294 (296)
                       ++  .++.+|+||+|||++|..|++++.+ ..++++.  +.+ ..|++++||+++
T Consensus       268 ~~g--~~i~ad~lIIATGS~P~~P~~~~~~~~~V~ts~d~~~l~~lpk~VvIVGgG  321 (659)
T PTZ00153        268 KSG--KEFKVKNIIIATGSTPNIPDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMG  321 (659)
T ss_pred             cCC--EEEECCEEEEcCCCCCCCCCCCCCCCCcEEehHHhhhhhhcCCceEEECCC
Confidence             44  5799999999999999999876654 3366652  222 346778888764

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.88  E-value=2.3e-21  Score=180.05  Aligned_cols=170  Identities=32%  Similarity=0.518  Sum_probs=131.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhc--ccccCcc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATT--SDNFGFH  192 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~g~~  192 (296)
                      .|||+||||||+|++||.+++++|++|+|+|  +.+      .+||+|.+++|+|++.+.......+....  ...+|+.
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE--~~~------~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~   74 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVE--GRS------TLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIE   74 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEe--cCC------ceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCcc
Confidence            4899999999999999999999999999999  545      79999999999999999988776654442  4556765


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCCCCCC
Q psy7665         193 MKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIP  269 (296)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~p~i~  269 (296)
                      ....++|..+..+.......+...+...++..+|+++.++..+.+++++.+   +++...+.||+||+|||++|.  .+|
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~--~ip  152 (466)
T PRK06115         75 VKPTLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPT--PLP  152 (466)
T ss_pred             ccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCC--CCC
Confidence            433678888888888777777666777778889999998888777777766   343357999999999999884  355


Q ss_pred             CCc---cceeecc--cC-CCCCCcEEEeecc
Q psy7665         270 GAR---LLRTLSL--LS-GVDPPTLIFLEHI  294 (296)
Q Consensus       270 G~~---~~~~~s~--~~-~~~~~~~~~~~~~  294 (296)
                      |.+   .+++++.  +. ...|++++|++++
T Consensus       153 g~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG  183 (466)
T PRK06115        153 GVTIDNQRIIDSTGALSLPEVPKHLVVIGAG  183 (466)
T ss_pred             CCCCCCCeEECHHHHhCCccCCCeEEEECCC
Confidence            543   3345542  22 2457788888764

>PRK13748 putative mercuric reductase; Provisional

Probab=99.88  E-value=1.6e-21  Score=185.53  Aligned_cols=172  Identities=30%  Similarity=0.473  Sum_probs=132.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccc-cCcc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDN-FGFH  192 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~g~~  192 (296)
                      ..|||+||||||+|+.+|.+|++.|++|+|||  +.       .+||+|.+++|+|++.+.+............+ +|++
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie--~~-------~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~  167 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIE--RG-------TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIA  167 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEe--cC-------cceeeccccCccccHHHHHHHHHHHHHhcccccCCcc
Confidence            46899999999999999999999999999999  32       78999999999999999988887776655443 4765


Q ss_pred             ccc-cCCHHHHHHHHHHHHHHHHHH-HHHHHHHC-CcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCCC
Q psy7665         193 MKK-SFTWKTLVDNVQKYIRNLNNN-YEKELEKN-KIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYP  266 (296)
Q Consensus       193 ~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~p  266 (296)
                      ... ..+|..+.++.+.....+... +...+... +|+++.+++.+.+.+.+.+   +++...+.||+||+|||++|..|
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p  247 (561)
T PRK13748        168 ATVPTIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVP  247 (561)
T ss_pred             CCCCccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCC
Confidence            333 678888888777766655432 34445555 8999999888887777766   34345799999999999999999


Q ss_pred             CCCCCcc-ceeec---ccCCCCCCcEEEeecc
Q psy7665         267 DIPGARL-LRTLS---LLSGVDPPTLIFLEHI  294 (296)
Q Consensus       267 ~i~G~~~-~~~~s---~~~~~~~~~~~~~~~~  294 (296)
                      ++||.+. ..+++   +.....|++++||+++
T Consensus       248 ~i~g~~~~~~~~~~~~~~~~~~~~~vvViGgG  279 (561)
T PRK13748        248 PIPGLKETPYWTSTEALVSDTIPERLAVIGSS  279 (561)
T ss_pred             CCCCCCccceEccHHHhhcccCCCeEEEECCC
Confidence            9999864 23333   2223457788888764

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=99.88  E-value=2.4e-21  Score=179.74  Aligned_cols=169  Identities=33%  Similarity=0.531  Sum_probs=137.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc--
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK--  194 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~--  194 (296)
                      +|+||||||+|+.+|.++++.|++|+|+|  +.       .+||+|.|.+|+|++.+.+.............+|+...  
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie--~~-------~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~   72 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLID--EA-------DLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNG   72 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEE--CC-------cccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCC
Confidence            79999999999999999999999999999  32       68999999999999999998888887777777887643  


Q ss_pred             c-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE--cceeEEEEeCeEEEcCCCCCCCCCCCCC
Q psy7665         195 K-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF--AGEERTVSAQNFIIAVGGRPTYPDIPGA  271 (296)
Q Consensus       195 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v--~g~~~~~~a~~vV~AtG~~p~~p~i~G~  271 (296)
                      . ..+|..+..+.+...+.+.......++..+++++.+++.+.+.+.+.+  +++..++.||+||+|||++|+.|++++.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~~~~  152 (458)
T PRK06912         73 SISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAPF  152 (458)
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCCCCC
Confidence            2 678999988888888877666777788889999999988888888877  3333579999999999999988888876


Q ss_pred             c-cceeec--ccC-CCCCCcEEEeecc
Q psy7665         272 R-LLRTLS--LLS-GVDPPTLIFLEHI  294 (296)
Q Consensus       272 ~-~~~~~s--~~~-~~~~~~~~~~~~~  294 (296)
                      + ..++++  .+. ...|++++|++++
T Consensus       153 ~~~~v~~~~~~~~~~~~~~~vvIIGgG  179 (458)
T PRK06912        153 DGKWIINSKHAMSLPSIPSSLLIVGGG  179 (458)
T ss_pred             CCCeEEcchHHhCccccCCcEEEECCC
Confidence            5 445555  233 3346778888764

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=99.88  E-value=4.5e-21  Score=178.26  Aligned_cols=173  Identities=31%  Similarity=0.470  Sum_probs=131.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhccccc-Ccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNF-GFH  192 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-g~~  192 (296)
                      ..|||+||||||+|+.+|.+|++.|++|+|+|  +.+      .+||+|.+.+|+|++.+...............+ .+.
T Consensus         4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE--~~~------~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~   75 (461)
T PRK05249          4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIE--RYR------NVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYR   75 (461)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCEEEEEe--ccc------cccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccC
Confidence            45899999999999999999999999999999  555      789999999999999887765544433332222 222


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCCCCCC
Q psy7665         193 MKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIP  269 (296)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~p~i~  269 (296)
                      ....+++..+..+.+...+.+...+...+++.+++++.++..+.+.+.+++   +++...+.||+||+|||++|..|+++
T Consensus        76 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~  155 (461)
T PRK05249         76 VKLRITFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDV  155 (461)
T ss_pred             CcCccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCC
Confidence            222678888888888877777667777788889999998887777777766   34335799999999999999999877


Q ss_pred             CCc-cceeec--cc-CCCCCCcEEEeecc
Q psy7665         270 GAR-LLRTLS--LL-SGVDPPTLIFLEHI  294 (296)
Q Consensus       270 G~~-~~~~~s--~~-~~~~~~~~~~~~~~  294 (296)
                      +.+ ..++++  ++ ....|++++|++.+
T Consensus       156 ~~~~~~v~~~~~~~~~~~~~~~v~IiGgG  184 (461)
T PRK05249        156 DFDHPRIYDSDSILSLDHLPRSLIIYGAG  184 (461)
T ss_pred             CCCCCeEEcHHHhhchhhcCCeEEEECCC
Confidence            754 334444  22 23457788888764

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.87  E-value=8.3e-21  Score=176.50  Aligned_cols=170  Identities=35%  Similarity=0.557  Sum_probs=134.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..|||+||||||+|++||..|++.|++|+|+|  +.       .+||+|.+.+|+|++.+.+.....+.......+|+..
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE--~~-------~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~   73 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVE--KE-------KLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKA   73 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEe--cc-------ccccceeecccCCcHHHHHhhhHHHHHHHHHhcCccc
Confidence            46899999999999999999999999999999  32       6899999999999999998888877777777777764


Q ss_pred             cc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEc--ceeEEEEeCeEEEcCCCCCCCCCCCC
Q psy7665         194 KK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFA--GEERTVSAQNFIIAVGGRPTYPDIPG  270 (296)
Q Consensus       194 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~--g~~~~~~a~~vV~AtG~~p~~p~i~G  270 (296)
                      .. .++|..+.++.+...+.+...+...+++.+++++.+++.+.+.+.+++.  .+...+.||+||+|||++|..|  ||
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~--pg  151 (462)
T PRK06416         74 ENVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPREL--PG  151 (462)
T ss_pred             CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCC--CC
Confidence            33 6789999999888888877777777888899999988877777777772  2126799999999999998764  44


Q ss_pred             Cc---cceeecc--cC-CCCCCcEEEeecc
Q psy7665         271 AR---LLRTLSL--LS-GVDPPTLIFLEHI  294 (296)
Q Consensus       271 ~~---~~~~~s~--~~-~~~~~~~~~~~~~  294 (296)
                      .+   ..+.++.  +. ...+++++|++++
T Consensus       152 ~~~~~~~v~~~~~~~~~~~~~~~vvVvGgG  181 (462)
T PRK06416        152 IEIDGRVIWTSDEALNLDEVPKSLVVIGGG  181 (462)
T ss_pred             CCCCCCeEEcchHhhCccccCCeEEEECCC
Confidence            43   2233442  22 2346778887754

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=99.87  E-value=1.3e-20  Score=175.15  Aligned_cols=170  Identities=34%  Similarity=0.559  Sum_probs=133.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKK  195 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~  195 (296)
                      |||+||||||+|+.+|.+|++.|++|+|+|  + +      .+||+|.+.+|+|++.+...............+++....
T Consensus         2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie--~-~------~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~   72 (461)
T TIGR01350         2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVE--K-E------YLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVEN   72 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEe--c-C------CCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCC
Confidence            799999999999999999999999999999  5 5      889999999999999988877776665556667765433


Q ss_pred             -cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE--cceeEEEEeCeEEEcCCCCCCCCCCC-CC
Q psy7665         196 -SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF--AGEERTVSAQNFIIAVGGRPTYPDIP-GA  271 (296)
Q Consensus       196 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v--~g~~~~~~a~~vV~AtG~~p~~p~i~-G~  271 (296)
                       .++|..+..+.+...+.+...+...+++.+++++.++..+.+.+.+.+  .++...+.||+||+|||++|+.|++| +.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~~~~  152 (461)
T TIGR01350        73 VSVDWEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGPFDF  152 (461)
T ss_pred             CcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCCCCC
Confidence             678888888887777777777777788889999998887777777777  22225799999999999999888876 43


Q ss_pred             c-cceeecc--cC-CCCCCcEEEeecc
Q psy7665         272 R-LLRTLSL--LS-GVDPPTLIFLEHI  294 (296)
Q Consensus       272 ~-~~~~~s~--~~-~~~~~~~~~~~~~  294 (296)
                      + ..+.++.  +. ...++++++++.+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~vvViGgG  179 (461)
T TIGR01350       153 DGEVVITSTGALNLKEVPESLVIIGGG  179 (461)
T ss_pred             CCceEEcchHHhccccCCCeEEEECCC
Confidence            3 2344442  22 2356778887654

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=99.87  E-value=9.7e-21  Score=176.00  Aligned_cols=168  Identities=36%  Similarity=0.538  Sum_probs=133.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..|||+||||||+|+.+|.+|++.|++|+|+|  + +      .+||+|.+.+|+|++.+.+.............+|+..
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie--~-~------~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~   72 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIE--K-G------PLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHA   72 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEe--C-C------ccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            35899999999999999999999999999999  4 4      7899999999999999998888777777777777765


Q ss_pred             cc-cCCHHHHHHHHHHHHHHHHHHH-HHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCCCCCCCCCCC
Q psy7665         194 KK-SFTWKTLVDNVQKYIRNLNNNY-EKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA  271 (296)
Q Consensus       194 ~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~p~~p~i~G~  271 (296)
                      .. .++|..+.++.+.....+...+ ...++..+++++.++..+.+.+.+.+++  .++.+|+||+|||++  .|++||.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v~~--~~~~~d~lIiATGs~--~p~ipg~  148 (460)
T PRK06292         73 DGPKIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEVNG--ERIEAKNIVIATGSR--VPPIPGV  148 (460)
T ss_pred             CCCccCHHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEECc--EEEEeCEEEEeCCCC--CCCCCCC
Confidence            43 7889999998888887776655 4556777999998887777778887765  679999999999998  5566665


Q ss_pred             c----cceeecc--cC-CCCCCcEEEeecc
Q psy7665         272 R----LLRTLSL--LS-GVDPPTLIFLEHI  294 (296)
Q Consensus       272 ~----~~~~~s~--~~-~~~~~~~~~~~~~  294 (296)
                      .    ..+.++.  +. ...|+++++|+++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~k~v~VIGgG  178 (460)
T PRK06292        149 WLILGDRLLTSDDAFELDKLPKSLAVIGGG  178 (460)
T ss_pred             cccCCCcEECchHHhCccccCCeEEEECCC
Confidence            2    2233432  21 2456778888764

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=99.86  E-value=2.8e-20  Score=173.35  Aligned_cols=179  Identities=28%  Similarity=0.428  Sum_probs=134.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcc-cccCcc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTS-DNFGFH  192 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~g~~  192 (296)
                      ..||++||||||+|+.||.++++.|.+|+|+|  +....+.+..+||+|.+.+|+|++.+............. ..+|+.
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie--~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~   80 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIE--AWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIH   80 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhCCCeEEEEe--cccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCcc
Confidence            35899999999999999999999999999999  421223334789999999999999988877776655543 566776


Q ss_pred             ccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEe----CCEEEEc-ceeEEEEeCeEEEcCCCCCCCC
Q psy7665         193 MKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVD----KHRVKFA-GEERTVSAQNFIIAVGGRPTYP  266 (296)
Q Consensus       193 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~v~v~-g~~~~~~a~~vV~AtG~~p~~p  266 (296)
                      ... .++|..+..+.+...+.+...+...++..+|+++.+++.+.+    .+.|.++ +...++.||+||+|||++|+.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~~  160 (475)
T PRK06327         81 VDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHL  160 (475)
T ss_pred             CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCCC
Confidence            444 678999998888877777777777788889999998887765    6778773 2225799999999999998654


Q ss_pred             C-CCCCccceeecc--cC-CCCCCcEEEeecc
Q psy7665         267 D-IPGARLLRTLSL--LS-GVDPPTLIFLEHI  294 (296)
Q Consensus       267 ~-i~G~~~~~~~s~--~~-~~~~~~~~~~~~~  294 (296)
                      + ++.....++++.  +. ...|++++|++.+
T Consensus       161 p~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG  192 (475)
T PRK06327        161 PGVPFDNKIILDNTGALNFTEVPKKLAVIGAG  192 (475)
T ss_pred             CCCCCCCceEECcHHHhcccccCCeEEEECCC
Confidence            3 443323344442  22 2356788888754

>TIGR03452 mycothione_red mycothione reductase

Probab=99.86  E-value=1.2e-20  Score=174.59  Aligned_cols=167  Identities=27%  Similarity=0.496  Sum_probs=127.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK  194 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~  194 (296)
                      .|||+|||+||+|..+|..  ..|.+|+++|  + +      .+||+|.|+||+|++.+.+.+...+.......+|+...
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie--~-~------~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~   70 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVE--K-G------TFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAE   70 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--HCCCeEEEEe--C-C------CCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCC
Confidence            4899999999999998644  4799999999  3 2      78999999999999999999998888888888888644


Q ss_pred             c-cCCHHHHHHHHHH-HHHHHHHH-HHHHH--HHCCcEEEcceEEEEeCCEEEE-cceeEEEEeCeEEEcCCCCCCCCCC
Q psy7665         195 K-SFTWKTLVDNVQK-YIRNLNNN-YEKEL--EKNKIDYFNAKAVFVDKHRVKF-AGEERTVSAQNFIIAVGGRPTYPDI  268 (296)
Q Consensus       195 ~-~~~~~~~~~~~~~-~~~~~~~~-~~~~~--~~~~v~~~~~~~~~~~~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~i  268 (296)
                      . .++|..+..+... ..+.+... ....+  ++.+++++.++..+.+.+.|.+ ++  .++.||+||+|||++|..|++
T Consensus        71 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~~~g--~~~~~d~lIiATGs~p~~p~~  148 (452)
T TIGR03452        71 IDSVRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGDG--EEITGDQIVIAAGSRPYIPPA  148 (452)
T ss_pred             CCccCHHHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEECCC--cEEEeCEEEEEECCCCCCCCC
Confidence            3 6799999988766 44443221 12222  3479999999998888889988 55  468999999999999998875


Q ss_pred             CCCc-cceeec--ccCC-CCCCcEEEeecc
Q psy7665         269 PGAR-LLRTLS--LLSG-VDPPTLIFLEHI  294 (296)
Q Consensus       269 ~G~~-~~~~~s--~~~~-~~~~~~~~~~~~  294 (296)
                      ++.+ ..+.++  .+.. ..|+++++++.+
T Consensus       149 ~~~~~~~~~~~~~~~~l~~~~k~vvVIGgG  178 (452)
T TIGR03452       149 IADSGVRYHTNEDIMRLPELPESLVIVGGG  178 (452)
T ss_pred             CCCCCCEEEcHHHHHhhhhcCCcEEEECCC
Confidence            4432 223443  2332 346788888754

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.86  E-value=2.5e-20  Score=172.13  Aligned_cols=157  Identities=29%  Similarity=0.420  Sum_probs=119.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK  194 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~  194 (296)
                      .|||+||||||+|++||.+|++.|++|+|+|  +.+     ..+||+|.+.+|+|++.+......               
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE--~~~-----~~~GG~c~~~gciP~k~~~~~~~~---------------   60 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVE--ESK-----AMYGGTCINIGCIPTKTLLVAAEK---------------   60 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEe--cCC-----cccceeeecCccccchHhhhhhhc---------------
Confidence            5899999999999999999999999999999  432     026999999999999887765431               


Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE-c-ceeEEEEeCeEEEcCCCCCCCCCCCCCc
Q psy7665         195 KSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF-A-GEERTVSAQNFIIAVGGRPTYPDIPGAR  272 (296)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v-~-g~~~~~~a~~vV~AtG~~p~~p~i~G~~  272 (296)
                       ..+|..+..+.+.....+.......+.+.+|+++.++..+.+.+.+.+ . ++...+.+|+||+|||++|+.|++||.+
T Consensus        61 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~G~~  139 (438)
T PRK07251         61 -NLSFEQVMATKNTVTSRLRGKNYAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLA  139 (438)
T ss_pred             -CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCCCcC
Confidence             235666666665555555554556677889999998887777788877 3 2235799999999999999999999974


Q ss_pred             --cceeec--ccC-CCCCCcEEEeecc
Q psy7665         273 --LLRTLS--LLS-GVDPPTLIFLEHI  294 (296)
Q Consensus       273 --~~~~~s--~~~-~~~~~~~~~~~~~  294 (296)
                        ..++++  ++. ...|++++||+++
T Consensus       140 ~~~~v~~~~~~~~~~~~~~~vvIIGgG  166 (438)
T PRK07251        140 DSKHVYDSTGIQSLETLPERLGIIGGG  166 (438)
T ss_pred             CCCcEEchHHHhcchhcCCeEEEECCC
Confidence              335554  222 2457788888764

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=99.86  E-value=4.1e-20  Score=171.74  Aligned_cols=169  Identities=24%  Similarity=0.372  Sum_probs=135.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc--
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK--  194 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~--  194 (296)
                      ||+|||||++|+.+|..++++|.+|+++|  +.       .+||+|.+.+|+|++.+.+.+...+.......+|+...  
T Consensus         3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e--~~-------~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~   73 (466)
T PRK07845          3 RIVIIGGGPGGYEAALVAAQLGADVTVIE--RD-------GLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDD   73 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEE--cc-------CCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccC
Confidence            89999999999999999999999999999  32       68999999999999999998888887777778887642  


Q ss_pred             -c-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEE----EeCCEEEE---cceeEEEEeCeEEEcCCCCCCC
Q psy7665         195 -K-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVF----VDKHRVKF---AGEERTVSAQNFIIAVGGRPTY  265 (296)
Q Consensus       195 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~  265 (296)
                       . .++|..+.++.....+.+...+...++..+|+++.+++.+    .+.+.+.+   +|+..++.||+||+|||++|..
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~  153 (466)
T PRK07845         74 GEARVDLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRI  153 (466)
T ss_pred             cccccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCC
Confidence             2 6789999999888888877777888888999999998877    55677766   3433479999999999999987


Q ss_pred             CCCCCCc-cceeec--ccCC-CCCCcEEEeecc
Q psy7665         266 PDIPGAR-LLRTLS--LLSG-VDPPTLIFLEHI  294 (296)
Q Consensus       266 p~i~G~~-~~~~~s--~~~~-~~~~~~~~~~~~  294 (296)
                      |++++.+ +.++++  ++.. ..|++++|++++
T Consensus       154 ~p~~~~~~~~v~~~~~~~~~~~~~~~vvVIGgG  186 (466)
T PRK07845        154 LPTAEPDGERILTWRQLYDLDELPEHLIVVGSG  186 (466)
T ss_pred             CCCCCCCCceEEeehhhhcccccCCeEEEECCC
Confidence            7665543 334443  3332 346778888764

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.85  E-value=6.4e-20  Score=170.64  Aligned_cols=169  Identities=30%  Similarity=0.447  Sum_probs=128.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhh-cccccCccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEAT-TSDNFGFHM  193 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~g~~~  193 (296)
                      .|||+||||||+|+.||.+|++.|++|+|+|  + .      .+||+|.+.+|+|++.+........... ....+|+..
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie--~-~------~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~   74 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVE--K-K------YWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISG   74 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEe--c-C------CCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCc
Confidence            4899999999999999999999999999999  3 2      7899999999999998887665555443 344566652


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCCCCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPG  270 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~p~i~G  270 (296)
                      ...+++..+..+.+...+.+.......++..+|+.+.++..+.+.+.+.+   +++..++.||+||+|||++|..|  ||
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~--pg  152 (466)
T PRK07818         75 EVTFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLL--PG  152 (466)
T ss_pred             CcccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCC--CC
Confidence            22678888888877777666656666667779999998888877888777   34345799999999999998764  55


Q ss_pred             Cc--cceeec---ccCCCCCCcEEEeecc
Q psy7665         271 AR--LLRTLS---LLSGVDPPTLIFLEHI  294 (296)
Q Consensus       271 ~~--~~~~~s---~~~~~~~~~~~~~~~~  294 (296)
                      .+  ..++++   ......|++++|++++
T Consensus       153 ~~~~~~v~~~~~~~~~~~~~~~vvVIGgG  181 (466)
T PRK07818        153 TSLSENVVTYEEQILSRELPKSIVIAGAG  181 (466)
T ss_pred             CCCCCcEEchHHHhccccCCCeEEEECCc
Confidence            32  234443   2234567888888764

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.83  E-value=5.5e-19  Score=163.35  Aligned_cols=157  Identities=25%  Similarity=0.398  Sum_probs=110.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK  194 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~  194 (296)
                      .|||+||||||+|++||.+|++.|++|+|+|  +.+     ..+||+|.+.+|+|++.+.+....               
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie--~~~-----~~~GG~~~~~gcip~k~l~~~~~~---------------   60 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIE--QSN-----AMYGGTCINIGCIPTKTLVHDAQQ---------------   60 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHCCCeEEEEc--CCC-----CccceeEeeccccchHHHHHHhcc---------------
Confidence            4899999999999999999999999999999  432     047999999999999876654321               


Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCcEEEcceEEEEeCCEEEE--cceeEEEEeCeEEEcCCCCCCCCCCCCC
Q psy7665         195 KSFTWKTLVDNVQKYIRNLNNNYEKELEK-NKIDYFNAKAVFVDKHRVKF--AGEERTVSAQNFIIAVGGRPTYPDIPGA  271 (296)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~v~v--~g~~~~~~a~~vV~AtG~~p~~p~i~G~  271 (296)
                       ..+|.....+.+...+.+.......+.+ .+++++.+++.+.+...+.+  .++..++.+|+||+|||++|..|++||.
T Consensus        61 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i~G~  139 (441)
T PRK08010         61 -HTDFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGI  139 (441)
T ss_pred             -CCCHHHHHHHHHHHHHHHHHhHHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCCCCc
Confidence             2344444444444333333222233333 48999988887777777766  2322468999999999999999999997


Q ss_pred             cc--ceeec--ccC-CCCCCcEEEeecc
Q psy7665         272 RL--LRTLS--LLS-GVDPPTLIFLEHI  294 (296)
Q Consensus       272 ~~--~~~~s--~~~-~~~~~~~~~~~~~  294 (296)
                      ++  .++++  .+. ...|++++|++++
T Consensus       140 ~~~~~v~~~~~~~~~~~~~~~v~ViGgG  167 (441)
T PRK08010        140 TTTPGVYDSTGLLNLKELPGHLGILGGG  167 (441)
T ss_pred             cCCCCEEChhHhhcccccCCeEEEECCC
Confidence            53  34444  222 2456778887653

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.63  E-value=1.2e-14  Score=134.35  Aligned_cols=143  Identities=22%  Similarity=0.354  Sum_probs=87.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCC--------chhHHHHhhhhHHH----
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCI--------PKKLFHRASLLNEE----  182 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~--------p~~~~~~~~~~~~~----  182 (296)
                      .++|+|||||++|+.||.+|++.|++|+|+|  +.+      .+||.|.+....        |.....+...+...    
T Consensus        10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE--~~~------~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~   81 (461)
T PLN02172         10 SQHVAVIGAGAAGLVAARELRREGHTVVVFE--REK------QVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNL   81 (461)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCeEEEEe--cCC------CCcceeecCCCcCCCccccCCCCcccchhhhhhhhccC
Confidence            4689999999999999999999999999999  677      889999764322        11111111111111    


Q ss_pred             ---hhcccccCccc---------cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcE--EE-cceEEEE----eCCEEEE
Q psy7665         183 ---ATTSDNFGFHM---------KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKID--YF-NAKAVFV----DKHRVKF  243 (296)
Q Consensus       183 ---~~~~~~~g~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~-~~~~~~~----~~~~v~v  243 (296)
                         ...+..+.+..         ...+...++.++++.+++.+           ++.  +. ..++..+    ..|.|++
T Consensus        82 p~~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~f-----------gl~~~I~~~t~V~~V~~~~~~w~V~~  150 (461)
T PLN02172         82 PRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREF-----------KIEEMVRFETEVVRVEPVDGKWRVQS  150 (461)
T ss_pred             CHhhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHc-----------CCcceEEecCEEEEEeecCCeEEEEE
Confidence               11111222111         01345566666666665554           333  22 2222211    2356665


Q ss_pred             -cc--eeEEEEeCeEEEcCC--CCCCCCCCCCCcccee
Q psy7665         244 -AG--EERTVSAQNFIIAVG--GRPTYPDIPGARLLRT  276 (296)
Q Consensus       244 -~g--~~~~~~a~~vV~AtG--~~p~~p~i~G~~~~~~  276 (296)
                       ++  ...+..+|+||+|||  +.|+.|++||.+++..
T Consensus       151 ~~~~~~~~~~~~d~VIvAtG~~~~P~~P~ipG~~~f~G  188 (461)
T PLN02172        151 KNSGGFSKDEIFDAVVVCNGHYTEPNVAHIPGIKSWPG  188 (461)
T ss_pred             EcCCCceEEEEcCEEEEeccCCCCCcCCCCCCcccCCc
Confidence             22  223568999999999  6899999999986644

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.61  E-value=2.5e-14  Score=125.43  Aligned_cols=144  Identities=24%  Similarity=0.369  Sum_probs=91.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCccccc--CCeeecc-CCCchhHHHHhh-------------
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGL--GGTCVNV-GCIPKKLFHRAS-------------  177 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~--GG~~~~~-~~~p~~~~~~~~-------------  177 (296)
                      +.+||+||||||||++||..+++.|++|+|+|  +.+++|+|+.+  ||.|..+ .+.|..++.+..             
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid--~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~f   79 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLID--KGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARF   79 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhhcCCEEEEEe--cCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhC
Confidence            35799999999999999999999999999999  88999999888  5688433 233544443321             


Q ss_pred             hhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEE-EE--eCCEEE--E-cceeEEEE
Q psy7665         178 LLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAV-FV--DKHRVK--F-AGEERTVS  251 (296)
Q Consensus       178 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~--~~~~v~--v-~g~~~~~~  251 (296)
                      ...+.+.+...+|+.....-....+.  ..+.++.+...+..++++.||++++.+.. .+  ++....  + ++  .++.
T Consensus        80 t~~d~i~~~e~~Gi~~~e~~~Gr~Fp--~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g--~~i~  155 (408)
T COG2081          80 TPEDFIDWVEGLGIALKEEDLGRMFP--DSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSG--ETVK  155 (408)
T ss_pred             CHHHHHHHHHhcCCeeEEccCceecC--CccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCC--CEEE
Confidence            12223444455554432200000000  01223445556778888999999876442 22  222333  3 34  4899


Q ss_pred             eCeEEEcCCCCC
Q psy7665         252 AQNFIIAVGGRP  263 (296)
Q Consensus       252 a~~vV~AtG~~p  263 (296)
                      ||.+|+|||..+
T Consensus       156 ~d~lilAtGG~S  167 (408)
T COG2081         156 CDSLILATGGKS  167 (408)
T ss_pred             ccEEEEecCCcC
Confidence            999999999643

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.58  E-value=4.6e-15  Score=136.56  Aligned_cols=162  Identities=18%  Similarity=0.275  Sum_probs=96.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCc-EEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKK-VALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFH  192 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~-V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~  192 (296)
                      ..+||+|||||++|+.+|++|.++|.+ ++|+|  +.+      .+||+|.... +|+....    .......++++.+.
T Consensus         7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~E--k~~------~~Gg~W~~~r-y~~l~~~----~p~~~~~~~~~p~~   73 (443)
T COG2072           7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFE--KRD------DVGGTWRYNR-YPGLRLD----SPKWLLGFPFLPFR   73 (443)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEE--ccC------CcCCcchhcc-CCceEEC----CchheeccCCCccC
Confidence            567999999999999999999999998 99999  777      8999985431 1110000    00011122222222


Q ss_pred             ccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcc--eEEEE---eCCEEEE-cceeEEEEeCeEEEcCCC--CC
Q psy7665         193 MKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA--KAVFV---DKHRVKF-AGEERTVSAQNFIIAVGG--RP  263 (296)
Q Consensus       193 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~---~~~~v~v-~g~~~~~~a~~vV~AtG~--~p  263 (296)
                      ... ..++.....++.++.+++....       .+.+...  .+.+.   ..|.|++ ++...++.||+||+|||.  .|
T Consensus        74 ~~~~~~~~~~~~~y~~~~~~~y~~~~-------~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P  146 (443)
T COG2072          74 WDEAFAPFAEIKDYIKDYLEKYGLRF-------QIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEP  146 (443)
T ss_pred             CcccCCCcccHHHHHHHHHHHcCcee-------EEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCC
Confidence            111 3333345555555555543211       1222111  12222   2467777 332223789999999994  89


Q ss_pred             CCCCCCCCccceeecccCCCCC-------CcEEEeeccC
Q psy7665         264 TYPDIPGARLLRTLSLLSGVDP-------PTLIFLEHIS  295 (296)
Q Consensus       264 ~~p~i~G~~~~~~~s~~~~~~~-------~~~~~~~~~~  295 (296)
                      ++|+|+|.++|-..-+|+..++       ++.+||+-++
T Consensus       147 ~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~Ga  185 (443)
T COG2072         147 YIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGA  185 (443)
T ss_pred             CCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCCc
Confidence            9999999998766655553333       4456665443

>PRK10262 thioredoxin reductase; Provisional

Probab=99.56  E-value=7.4e-14  Score=123.92  Aligned_cols=141  Identities=15%  Similarity=0.175  Sum_probs=85.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..+||+||||||+|++||.+|+++|++++++|  ..       ..||.+.....                    .++++.
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie--~~-------~~gg~~~~~~~--------------------~~~~~~   55 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVLIT--GM-------EKGGQLTTTTE--------------------VENWPG   55 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEE--ee-------cCCCceecCce--------------------ECCCCC
Confidence            56799999999999999999999999999999  32       45676543211                    112221


Q ss_pred             cc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEE--EeCCEEEEcceeEEEEeCeEEEcCCCCCCCCCCCC
Q psy7665         194 KK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVF--VDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG  270 (296)
Q Consensus       194 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~v~v~g~~~~~~a~~vV~AtG~~p~~p~i~G  270 (296)
                      .. .++++.+.+++..+.+.           .++++..++...  .....++++.....+.||+||+|||+.|+.|++||
T Consensus        56 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~~~i~g  124 (321)
T PRK10262         56 DPNDLTGPLLMERMHEHATK-----------FETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPS  124 (321)
T ss_pred             CCCCCCHHHHHHHHHHHHHH-----------CCCEEEeeEEEEEEecCCeEEEEecCCEEEECEEEECCCCCCCCCCCCC
Confidence            11 34455444444333332           344544433211  12233334211136899999999999999999999


Q ss_pred             Cccceeecc-------cCCCCCCcEEEeecc
Q psy7665         271 ARLLRTLSL-------LSGVDPPTLIFLEHI  294 (296)
Q Consensus       271 ~~~~~~~s~-------~~~~~~~~~~~~~~~  294 (296)
                      .+.+....+       -....+++++|+.++
T Consensus       125 ~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG  155 (321)
T PRK10262        125 EEAFKGRGVSACATCDGFFYRNQKVAVIGGG  155 (321)
T ss_pred             HHHcCCCcEEEeecCCHHHcCCCEEEEECCC
Confidence            764432211       112345677777654

>KOG1399|consensus

Probab=99.56  E-value=3.3e-14  Score=129.59  Aligned_cols=147  Identities=18%  Similarity=0.297  Sum_probs=97.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCc----hhHHHHhhhhHHHhhcccccC
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIP----KKLFHRASLLNEEATTSDNFG  190 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p----~~~~~~~~~~~~~~~~~~~~g  190 (296)
                      ..+|+|||||+|||.+|++|.+.|++|+++|  +.+      .+||.|.......    +.+-....+..++...+..+.
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfE--r~~------~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfp   77 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLREGHEVVVFE--RTD------DIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFP   77 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHCCCCceEEE--ecC------CccceEeecCcccccccchhhhhhccCChhhhcCCCCC
Confidence            4589999999999999999999999999999  777      9999997663322    112222223333444455554


Q ss_pred             ccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEE-E-eCCEEEE-cce--eEEEEeCeEEEcCCCC
Q psy7665         191 FHMKK---SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVF-V-DKHRVKF-AGE--ERTVSAQNFIIAVGGR  262 (296)
Q Consensus       191 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~-~~~~v~v-~g~--~~~~~a~~vV~AtG~~  262 (296)
                      ++...   .++..++.+|++.+++.+...-.-.+   ++++..  ... . +.|.|.. ++.  .....+|.||+|||-.
T Consensus        78 f~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f---~~~v~~--v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~  152 (448)
T KOG1399|consen   78 FPERDPRYFPSHREVLEYLRDYAKHFDLLKMINF---NTEVVR--VDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHY  152 (448)
T ss_pred             CcccCcccCCCHHHHHHHHHHHHHhcChhhheEe---cccEEE--EeeccCCceeEEEecCCcceeEEEeeEEEEcccCc
Confidence            44442   46777899999999988863221111   221111  111 2 4788887 222  3578899999999964


Q ss_pred             --CCCCCCCC--Cccc
Q psy7665         263 --PTYPDIPG--ARLL  274 (296)
Q Consensus       263 --p~~p~i~G--~~~~  274 (296)
                        |++|.+||  .+.|
T Consensus       153 ~~P~~P~~~g~~~~~f  168 (448)
T KOG1399|consen  153 VEPRIPQIPGPGIESF  168 (448)
T ss_pred             CCCCCCcCCCCchhhc
Confidence              89999988  4444

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.53  E-value=3.7e-14  Score=117.35  Aligned_cols=150  Identities=21%  Similarity=0.262  Sum_probs=73.4

Q ss_pred             EEECCChHHHHHHHHHHhCCCc-EEEEeccCCCCCCcccccCCeeeccCCC-----chhHHHHhhhhHHHhhcccccCcc
Q psy7665         119 CVIGGGSGGISAAKEAASMNKK-VALFDFVTPSQHGTVWGLGGTCVNVGCI-----PKKLFHRASLLNEEATTSDNFGFH  192 (296)
Q Consensus       119 vVIGgG~aG~~aA~~l~~~G~~-V~iiE~~~~~~~g~~~~~GG~~~~~~~~-----p~~~~~~~~~~~~~~~~~~~~g~~  192 (296)
                      +||||||+|+++|.+|.++|.+ ++|+|  +.+      .+||.|......     |...... ....    .+..+.+.
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e--~~~------~~Gg~w~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~   67 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLE--RND------RPGGVWRRYYSYTRLHSPSFFSSD-FGLP----DFESFSFD   67 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEE--SSS------SSTTHHHCH-TTTT-BSSSCCTGG-SS------CCCHSCHH
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEe--CCC------CCCCeeEEeCCCCccccCcccccc-ccCC----cccccccc
Confidence            6999999999999999999999 99999  777      788888542211     1100000 0000    00000000


Q ss_pred             ------ccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceE-E---E-EeCCEEEE-cceeEEEEeCeEEEcC
Q psy7665         193 ------MKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA-V---F-VDKHRVKF-AGEERTVSAQNFIIAV  259 (296)
Q Consensus       193 ------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~---~-~~~~~v~v-~g~~~~~~a~~vV~At  259 (296)
                            ... .+...++.++++.+++           +.++++..++. .   . .+.|.|++ ++  .++.||+||+||
T Consensus        68 ~~~~~~~~~~~~~~~~v~~yl~~~~~-----------~~~l~i~~~~~V~~v~~~~~~w~v~~~~~--~~~~a~~VVlAt  134 (203)
T PF13738_consen   68 DSPEWRWPHDFPSGEEVLDYLQEYAE-----------RFGLEIRFNTRVESVRRDGDGWTVTTRDG--RTIRADRVVLAT  134 (203)
T ss_dssp             HHHHHHHSBSSEBHHHHHHHHHHHHH-----------HTTGGEETS--EEEEEEETTTEEEEETTS---EEEEEEEEE--
T ss_pred             cCCCCCCCcccCCHHHHHHHHHHHHh-----------hcCcccccCCEEEEEEEeccEEEEEEEec--ceeeeeeEEEee
Confidence                  000 2334444444444433           33555544322 1   1 23467777 44  678899999999


Q ss_pred             CC--CCCCCCCCC-Cccceeec-ccC---CCCCCcEEEeecc
Q psy7665         260 GG--RPTYPDIPG-ARLLRTLS-LLS---GVDPPTLIFLEHI  294 (296)
Q Consensus       260 G~--~p~~p~i~G-~~~~~~~s-~~~---~~~~~~~~~~~~~  294 (296)
                      |.  .|+.|++|| .....+++ .+.   ....++++||+.+
T Consensus       135 G~~~~p~~p~~~g~~~~~~~h~~~~~~~~~~~~k~V~VVG~G  176 (203)
T PF13738_consen  135 GHYSHPRIPDIPGSAFRPIIHSADWRDPEDFKGKRVVVVGGG  176 (203)
T ss_dssp             -SSCSB---S-TTGGCSEEEEGGG-STTGGCTTSEEEEE--S
T ss_pred             eccCCCCccccccccccceEehhhcCChhhcCCCcEEEEcCh
Confidence            95  899999999 44455555 221   1233567777654

...

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=3.5e-13  Score=117.65  Aligned_cols=140  Identities=21%  Similarity=0.271  Sum_probs=86.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCc-EEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKK-VALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFH  192 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~-V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~  192 (296)
                      ..|||+||||||+|++||.++++.+++ ++|+|   ..      ..||.......+                 -.+.|++
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~---~~------~~gg~~~~~~~v-----------------enypg~~   55 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILE---GG------EPGGQLTKTTDV-----------------ENYPGFP   55 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEe---cC------CcCCccccceee-----------------cCCCCCc
Confidence            458999999999999999999999998 77777   22      445533221110                 1222332


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEe----CCEEEEcceeEEEEeCeEEEcCCCCCCCCCC
Q psy7665         193 MKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVD----KHRVKFAGEERTVSAQNFIIAVGGRPTYPDI  268 (296)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~v~v~g~~~~~~a~~vV~AtG~~p~~p~i  268 (296)
                      .  ....+.+.+.+..+..           ..++++........+    .+.|+++.  .++.||+||+|||+.++.|.+
T Consensus        56 ~--~~~g~~L~~~~~~~a~-----------~~~~~~~~~~v~~v~~~~~~F~v~t~~--~~~~ak~vIiAtG~~~~~~~~  120 (305)
T COG0492          56 G--GILGPELMEQMKEQAE-----------KFGVEIVEDEVEKVELEGGPFKVKTDK--GTYEAKAVIIATGAGARKLGV  120 (305)
T ss_pred             c--CCchHHHHHHHHHHHh-----------hcCeEEEEEEEEEEeecCceEEEEECC--CeEEEeEEEECcCCcccCCCC
Confidence            2  3445555555444433           337777664443322    23444433  339999999999999999999


Q ss_pred             CCCccceeec------ccCCCCCCcEEEeecc
Q psy7665         269 PGARLLRTLS------LLSGVDPPTLIFLEHI  294 (296)
Q Consensus       269 ~G~~~~~~~s------~~~~~~~~~~~~~~~~  294 (296)
                      ||..+++...      .+-....++++++.++
T Consensus       121 ~~e~e~~g~gv~yc~~cdg~~~~k~v~ViGgG  152 (305)
T COG0492         121 PGEEEFEGKGVSYCATCDGFFKGKDVVVIGGG  152 (305)
T ss_pred             CcchhhcCCceEEeeecCccccCCeEEEEcCC
Confidence            8766554432      1113444477777764

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.52  E-value=3.3e-14  Score=133.24  Aligned_cols=148  Identities=19%  Similarity=0.298  Sum_probs=84.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCC-chhH-HH--HhhhhHHHhhcccccCc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCI-PKKL-FH--RASLLNEEATTSDNFGF  191 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~-p~~~-~~--~~~~~~~~~~~~~~~g~  191 (296)
                      .+|+|||||++|+.+|..|.+.|++++++|  +.+      .+||.|...... +... .+  ...........++.+.+
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE--~~~------~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~   73 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFE--KSD------DIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPF   73 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEE--SSS------SSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-H
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEe--cCC------CCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCC
Confidence            379999999999999999999999999999  777      999999653211 0000 00  00011111222333333


Q ss_pred             cccc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEE----EEeCCEEEE--cceeEEEEeCeEEEcCCC--
Q psy7665         192 HMKK--SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAV----FVDKHRVKF--AGEERTVSAQNFIIAVGG--  261 (296)
Q Consensus       192 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~v~v--~g~~~~~~a~~vV~AtG~--  261 (296)
                      +.+.  .+...++.+|++.|++.+..  ... -+.+.++..-+..    ....|.|++  +++..+..+|+||+|||.  
T Consensus        74 p~~~p~f~~~~~v~~Yl~~Ya~~f~L--~~~-I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~  150 (531)
T PF00743_consen   74 PEDYPDFPSHSEVLEYLESYAEHFGL--RKH-IRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFS  150 (531)
T ss_dssp             CCCCSSSEBHHHHHHHHHHHHHHTTG--GGG-EETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHhhhCC--cce-EEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcC
Confidence            3222  56778899999999988752  111 0112222211100    012467777  454556679999999995  


Q ss_pred             CCCCCC--CCCCccc
Q psy7665         262 RPTYPD--IPGARLL  274 (296)
Q Consensus       262 ~p~~p~--i~G~~~~  274 (296)
                      .|++|.  +||.++|
T Consensus       151 ~P~~P~~~~~G~e~F  165 (531)
T PF00743_consen  151 KPNIPEPSFPGLEKF  165 (531)
T ss_dssp             CESB-----CTGGGH
T ss_pred             CCCCChhhhhhhhcC
Confidence            788885  9999866

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.51  E-value=3.1e-13  Score=128.24  Aligned_cols=138  Identities=20%  Similarity=0.262  Sum_probs=86.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK  194 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~  194 (296)
                      .|||+||||||||++||.+|++.|++|+|+|  + .      ..||.|....++.                 .+.++.  
T Consensus         4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE--~-~------~~GG~~~~~~~i~-----------------~~pg~~--   55 (555)
T TIGR03143         4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIE--K-D------DFGGQITITSEVV-----------------NYPGIL--   55 (555)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHCCCCEEEEe--c-C------CCCceEEeccccc-----------------cCCCCc--
Confidence            4899999999999999999999999999999  4 2      6788775442221                 001111  


Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEe--CC--EEEEcceeEEEEeCeEEEcCCCCCCCCCCCC
Q psy7665         195 KSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVD--KH--RVKFAGEERTVSAQNFIIAVGGRPTYPDIPG  270 (296)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~--~v~v~g~~~~~~a~~vV~AtG~~p~~p~i~G  270 (296)
                       ......+..+           +...++..+++++.++....+  ..  .+...+  ..+.+++||+|||++|+.|++||
T Consensus        56 -~~~~~~l~~~-----------l~~~~~~~gv~~~~~~V~~i~~~~~~~~V~~~~--g~~~a~~lVlATGa~p~~~~ipG  121 (555)
T TIGR03143        56 -NTTGPELMQE-----------MRQQAQDFGVKFLQAEVLDVDFDGDIKTIKTAR--GDYKTLAVLIATGASPRKLGFPG  121 (555)
T ss_pred             -CCCHHHHHHH-----------HHHHHHHcCCEEeccEEEEEEecCCEEEEEecC--CEEEEeEEEECCCCccCCCCCCC
Confidence             1122222222           233345558887765543322  22  233333  35789999999999999999999


Q ss_pred             Cccceeec-------ccCCCCCCcEEEeecc
Q psy7665         271 ARLLRTLS-------LLSGVDPPTLIFLEHI  294 (296)
Q Consensus       271 ~~~~~~~s-------~~~~~~~~~~~~~~~~  294 (296)
                      .+.+....       .......++++|++++
T Consensus       122 ~~~~~~~~v~~~~~~~~~~~~g~~VvVIGgG  152 (555)
T TIGR03143       122 EEEFTGRGVAYCATCDGEFFTGMDVFVIGGG  152 (555)
T ss_pred             HHHhCCceEEEEeecChhhcCCCEEEEECCC
Confidence            75432211       1122345677877664

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.51  E-value=6.2e-13  Score=116.53  Aligned_cols=118  Identities=26%  Similarity=0.383  Sum_probs=75.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKK  195 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~  195 (296)
                      |||+|||||++|+++|..|++.|++|+|+|  +.       ..||.|.....+                 ....+++.  
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie--~~-------~~gg~~~~~~~~-----------------~~~~~~~~--   52 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIE--GM-------EPGGQLTTTTEV-----------------ENYPGFPE--   52 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEe--cc-------CCCcceeecccc-----------------cccCCCCC--
Confidence            699999999999999999999999999999  43       356655432110                 00011110  


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEe--CC--EEEE-cceeEEEEeCeEEEcCCCCCCCCCCCC
Q psy7665         196 SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVD--KH--RVKF-AGEERTVSAQNFIIAVGGRPTYPDIPG  270 (296)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~--~v~v-~g~~~~~~a~~vV~AtG~~p~~p~i~G  270 (296)
                      .....++           ...+...+++.+++++..+...++  ..  .++. ++  ..+.||+||+|||++|..|.+||
T Consensus        53 ~~~~~~~-----------~~~l~~~~~~~gv~~~~~~v~~v~~~~~~~~v~~~~~--~~~~~d~liiAtG~~~~~~~i~g  119 (300)
T TIGR01292        53 GISGPEL-----------MEKMKEQAVKFGAEIIYEEVIKVDLSDRPFKVKTGDG--KEYTAKAVIIATGASARKLGIPG  119 (300)
T ss_pred             CCChHHH-----------HHHHHHHHHHcCCeEEEEEEEEEEecCCeeEEEeCCC--CEEEeCEEEECCCCCcccCCCCC
Confidence            1111122           222334456668888765443322  22  3333 33  57899999999999999999999


Q ss_pred             Cccc
Q psy7665         271 ARLL  274 (296)
Q Consensus       271 ~~~~  274 (296)
                      .+.+
T Consensus       120 ~~~~  123 (300)
T TIGR01292       120 EDEF  123 (300)
T ss_pred             hhhc
Confidence            7653

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.49  E-value=6.7e-13  Score=125.06  Aligned_cols=138  Identities=21%  Similarity=0.296  Sum_probs=87.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..|||+||||||+|++||.+|++.|++|+|++  .        .+||+|.....++                 ...+++ 
T Consensus       210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~--~--------~~GG~~~~~~~~~-----------------~~~~~~-  261 (517)
T PRK15317        210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVA--E--------RFGGQVLDTMGIE-----------------NFISVP-  261 (517)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEe--c--------CCCCeeeccCccc-----------------ccCCCC-
Confidence            56899999999999999999999999999998  2        5788774321111                 011111 


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcc-eEEEEe----CCEEEE-cceeEEEEeCeEEEcCCCCCCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA-KAVFVD----KHRVKF-AGEERTVSAQNFIIAVGGRPTYPD  267 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~----~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~  267 (296)
                        ...+.++..+           +...++..+++++.+ ++..+.    .+.+.+ ++  ..+.||.||+|||++|+.|+
T Consensus       262 --~~~~~~l~~~-----------l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g--~~i~a~~vViAtG~~~r~~~  326 (517)
T PRK15317        262 --ETEGPKLAAA-----------LEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANG--AVLKAKTVILATGARWRNMN  326 (517)
T ss_pred             --CCCHHHHHHH-----------HHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCC--CEEEcCEEEECCCCCcCCCC
Confidence              2233333333           334455567888754 332221    234444 44  46899999999999999999


Q ss_pred             CCCCccceee----ccc---CCCCCCcEEEeecc
Q psy7665         268 IPGARLLRTL----SLL---SGVDPPTLIFLEHI  294 (296)
Q Consensus       268 i~G~~~~~~~----s~~---~~~~~~~~~~~~~~  294 (296)
                      +||.+++...    +.+   .....++.+|++++
T Consensus       327 ipG~~~~~~~~v~~~~~~~~~~~~gk~VvVVGgG  360 (517)
T PRK15317        327 VPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGG  360 (517)
T ss_pred             CCCHHHhcCceEEEeeccCchhcCCCEEEEECCC
Confidence            9997654222    211   12234567777654

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.48  E-value=4.8e-14  Score=127.98  Aligned_cols=142  Identities=20%  Similarity=0.302  Sum_probs=72.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCccccc--CCeeeccC--CCchhHH-------------HHhhh
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGL--GGTCVNVG--CIPKKLF-------------HRASL  178 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~--GG~~~~~~--~~p~~~~-------------~~~~~  178 (296)
                      |||+||||||||++||+.|++.|.+|+|+|  ++++.|+|..+  +|.|....  ..+..+.             .....
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE--~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~   78 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLE--RNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFS   78 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE---SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEe--CCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCC
Confidence            799999999999999999999999999999  88999999877  46784322  2221111             11112


Q ss_pred             hHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEE-E--EeCCE---EEE-cceeEEEE
Q psy7665         179 LNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAV-F--VDKHR---VKF-AGEERTVS  251 (296)
Q Consensus       179 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~--~~~~~---v~v-~g~~~~~~  251 (296)
                      ..+.+.++...|++.....+...+  .....+.++...+...+++.||+++.++.. .  .....   |.+ ++  ..+.
T Consensus        79 ~~d~~~ff~~~Gv~~~~~~~gr~f--P~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~--~~~~  154 (409)
T PF03486_consen   79 PEDLIAFFEELGVPTKIEEDGRVF--PKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNG--GEYE  154 (409)
T ss_dssp             HHHHHHHHHHTT--EEE-STTEEE--ETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTT--EEEE
T ss_pred             HHHHHHHHHhcCCeEEEcCCCEEC--CCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCc--cccc
Confidence            223344445555533210000000  001123444555667778889999876432 2  22333   444 44  7899


Q ss_pred             eCeEEEcCCCCC
Q psy7665         252 AQNFIIAVGGRP  263 (296)
Q Consensus       252 a~~vV~AtG~~p  263 (296)
                      ||.||+|||..+
T Consensus       155 a~~vILAtGG~S  166 (409)
T PF03486_consen  155 ADAVILATGGKS  166 (409)
T ss_dssp             ESEEEE----SS
T ss_pred             CCEEEEecCCCC
Confidence            999999999765

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.44  E-value=6.3e-13  Score=130.46  Aligned_cols=163  Identities=16%  Similarity=0.206  Sum_probs=106.7

Q ss_pred             HHHccCcCCCCChHHHHHHHHHhh-cCCCCceeeccceeeeeeeccccCCccchhhhccCcceeeccccCCCCccccEEE
Q psy7665          42 QDFDALIGIHPTCAEAISLSWIKG-YNIEPEVIKLHTPYLVLAKARFLLPTLECQEVYHDGRFYDYLDNNFQTYDYDLCV  120 (296)
Q Consensus        42 ~~l~~~i~~~pt~~e~l~v~~~~~-~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvV  120 (296)
                      -.+..-+.+|+...|...+..+++ +.++...++.+.+|.+.     .+.....+.            .. ...+++|+|
T Consensus       375 p~~~grvC~~~~~Ce~~c~~~~~~~~~v~i~~l~r~~~d~~~-----~~~~~~~~~------------~~-~~~~~~V~I  436 (752)
T PRK12778        375 PAVCGRVCPQEKQCESKCIHGKMGEEAVAIGYLERFVADYER-----ESGNISVPE------------VA-EKNGKKVAV  436 (752)
T ss_pred             hhHhcCcCCCcCchHHhcccCCCCCCCcCHHHHHHHHHHHHH-----HhCCCCCCC------------CC-CCCCCEEEE
Confidence            445566677778999998888888 89999999998888441     000000000            01 124569999


Q ss_pred             ECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHH
Q psy7665         121 IGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWK  200 (296)
Q Consensus       121 IGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  200 (296)
                      |||||||++||.+|+++|++|+|||  +.+      .+||...                         |+++.- .+.. 
T Consensus       437 IGaGpAGl~aA~~l~~~G~~V~v~e--~~~------~~GG~l~-------------------------~gip~~-rlp~-  481 (752)
T PRK12778        437 IGSGPAGLSFAGDLAKRGYDVTVFE--ALH------EIGGVLK-------------------------YGIPEF-RLPK-  481 (752)
T ss_pred             ECcCHHHHHHHHHHHHCCCeEEEEe--cCC------CCCCeee-------------------------ecCCCC-CCCH-
Confidence            9999999999999999999999999  555      6677532                         222210 1110 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCC-CCCCCCCCCCc
Q psy7665         201 TLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGG-RPTYPDIPGAR  272 (296)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~-~p~~p~i~G~~  272 (296)
                      .+           .......+++.|++++.+...   ...+++++. ....+|+||+|||+ .|+.|++||.+
T Consensus       482 ~~-----------~~~~~~~l~~~gv~~~~~~~v---~~~v~~~~l-~~~~ydavvlAtGa~~~~~l~ipG~~  539 (752)
T PRK12778        482 KI-----------VDVEIENLKKLGVKFETDVIV---GKTITIEEL-EEEGFKGIFIASGAGLPNFMNIPGEN  539 (752)
T ss_pred             HH-----------HHHHHHHHHHCCCEEECCCEE---CCcCCHHHH-hhcCCCEEEEeCCCCCCCCCCCCCCC
Confidence            11           111223456679999876532   223333221 34569999999998 68889999976

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=99.43  E-value=3.4e-12  Score=120.22  Aligned_cols=138  Identities=22%  Similarity=0.289  Sum_probs=86.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..|||+||||||+|++||.+|++.|++|+|++  .        .+||++.....++                 ...+++ 
T Consensus       211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~--~--------~~GG~~~~~~~~~-----------------~~~~~~-  262 (515)
T TIGR03140       211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVA--E--------RIGGQVKDTVGIE-----------------NLISVP-  262 (515)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEe--c--------CCCCccccCcCcc-----------------cccccC-
Confidence            56899999999999999999999999999998  2        5788764321110                 011111 


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcce-EEEE--eC--CEEEE-cceeEEEEeCeEEEcCCCCCCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK-AVFV--DK--HRVKF-AGEERTVSAQNFIIAVGGRPTYPD  267 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--~~--~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~  267 (296)
                        ...+.++..           .+...++..+++++.+. ...+  +.  +.+++ ++  ..+.||++|+|||+.|+.|+
T Consensus       263 --~~~~~~l~~-----------~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g--~~i~~d~lIlAtGa~~~~~~  327 (515)
T TIGR03140       263 --YTTGSQLAA-----------NLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESG--EVLKAKSVIVATGARWRKLG  327 (515)
T ss_pred             --CCCHHHHHH-----------HHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCC--CEEEeCEEEECCCCCcCCCC
Confidence              112323322           23344455588887653 2222  22  23444 44  46999999999999999999


Q ss_pred             CCCCccceee----ccc---CCCCCCcEEEeecc
Q psy7665         268 IPGARLLRTL----SLL---SGVDPPTLIFLEHI  294 (296)
Q Consensus       268 i~G~~~~~~~----s~~---~~~~~~~~~~~~~~  294 (296)
                      +||.+++...    +.+   ....+++++|++++
T Consensus       328 ipG~~~~~~~~v~~~~~~~~~~~~~k~VvViGgG  361 (515)
T TIGR03140       328 VPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGG  361 (515)
T ss_pred             CCCHHHcCCCeEEEeeccChhhcCCCEEEEECCc
Confidence            9996543221    111   12245678887764

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK12831 putative oxidoreductase; Provisional

Probab=99.42  E-value=1e-12  Score=122.03  Aligned_cols=134  Identities=20%  Similarity=0.245  Sum_probs=85.4

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcc
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFH  192 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~  192 (296)
                      ...+||+||||||+|+++|++|+++|++|+|+|  +.+      .+||.+.+.  +|.                  +   
T Consensus       138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e--~~~------~~GG~l~~g--ip~------------------~---  186 (464)
T PRK12831        138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFE--ALH------EPGGVLVYG--IPE------------------F---  186 (464)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEe--cCC------CCCCeeeec--CCC------------------c---
Confidence            356799999999999999999999999999999  555      678865321  110                  0   


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCC-CCCCCCCCCC
Q psy7665         193 MKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGG-RPTYPDIPGA  271 (296)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~-~p~~p~i~G~  271 (296)
                         .+....+           .......++..|++++.++..   ...+.+++....+.+|+||+|||+ +|+.|++||.
T Consensus       187 ---~l~~~~~-----------~~~~~~~~~~~gv~i~~~~~v---~~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~  249 (464)
T PRK12831        187 ---RLPKETV-----------VKKEIENIKKLGVKIETNVVV---GKTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGE  249 (464)
T ss_pred             ---cCCccHH-----------HHHHHHHHHHcCCEEEcCCEE---CCcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCc
Confidence               0000001           111234456679998876532   122333221123569999999998 6999999997


Q ss_pred             c-cceeec--cc---------------CCCCCCcEEEeecc
Q psy7665         272 R-LLRTLS--LL---------------SGVDPPTLIFLEHI  294 (296)
Q Consensus       272 ~-~~~~~s--~~---------------~~~~~~~~~~~~~~  294 (296)
                      + ..+++.  ++               ....+++++||+++
T Consensus       250 ~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG  290 (464)
T PRK12831        250 NLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGG  290 (464)
T ss_pred             CCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCc
Confidence            6 334433  11               12345678888765

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.39  E-value=1.4e-12  Score=129.69  Aligned_cols=109  Identities=17%  Similarity=0.307  Sum_probs=73.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      .+.+|+||||||||++||.+|+++|++|+|||  +.+      .+||...                         ||++.
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE--~~~------~~GG~l~-------------------------yGIP~  351 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFE--AFH------DLGGVLR-------------------------YGIPE  351 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEe--eCC------CCCceEE-------------------------ccCCC
Confidence            35799999999999999999999999999999  666      7788532                         23321


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCC-CCCCCCCCCCc
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGG-RPTYPDIPGAR  272 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~-~p~~p~i~G~~  272 (296)
                      - ++. .++           .....+.++..|+++..+...   ...+++++ -....+|+|++|||+ .|+.++|||.+
T Consensus       352 ~-rlp-~~v-----------i~~~i~~l~~~Gv~f~~n~~v---G~dit~~~-l~~~~yDAV~LAtGA~~pr~l~IpG~d  414 (944)
T PRK12779        352 F-RLP-NQL-----------IDDVVEKIKLLGGRFVKNFVV---GKTATLED-LKAAGFWKIFVGTGAGLPTFMNVPGEH  414 (944)
T ss_pred             C-cCh-HHH-----------HHHHHHHHHhhcCeEEEeEEe---ccEEeHHH-hccccCCEEEEeCCCCCCCcCCCCCCc
Confidence            0 100 011           111234455669998876431   23344422 033569999999998 68889999976

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=99.33  E-value=1.1e-11  Score=122.28  Aligned_cols=129  Identities=16%  Similarity=0.199  Sum_probs=83.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      .+.+|+||||||||++||++|+++|++|+|+|  +.+      .+||.+.+.  +|.                  +    
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~E--k~~------~~GG~lr~~--IP~------------------~----  585 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFE--REE------NAGGVVKNI--IPQ------------------F----  585 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEe--ccc------ccCcceeee--ccc------------------c----
Confidence            45699999999999999999999999999999  666      678865321  221                  0    


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCC-CCCCCCCCCc
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYPDIPGAR  272 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~-p~~p~i~G~~  272 (296)
                        .+.. +.           .....+.+...|+++..+...     .+.++. .....+|+||+|||++ |..+++||.+
T Consensus       586 --Rlp~-ev-----------L~~die~l~~~GVe~~~gt~V-----di~le~-L~~~gYDaVILATGA~~~~~l~IpG~~  645 (1019)
T PRK09853        586 --RIPA-EL-----------IQHDIEFVKAHGVKFEFGCSP-----DLTVEQ-LKNEGYDYVVVAIGADKNGGLKLEGGN  645 (1019)
T ss_pred             --cccH-HH-----------HHHHHHHHHHcCCEEEeCcee-----EEEhhh-heeccCCEEEECcCCCCCCCCCCCCcc
Confidence              0010 00           111224456679998876532     123322 1345689999999996 4556789876


Q ss_pred             cceeeccc----------CCCCCCcEEEeecc
Q psy7665         273 LLRTLSLL----------SGVDPPTLIFLEHI  294 (296)
Q Consensus       273 ~~~~~s~~----------~~~~~~~~~~~~~~  294 (296)
                      +.+++...          .....++++||+++
T Consensus       646 ~gV~saldfL~~~k~~~~~~~~GKrVVVIGGG  677 (1019)
T PRK09853        646 QNVIKALPFLEEYKNKGTALKLGKHVVVVGGG  677 (1019)
T ss_pred             CCceehHHHHHHHhhhcccccCCCEEEEECCC
Confidence            55555421          12345678888764

>PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ]

Probab=99.31  E-value=7.3e-12  Score=93.32  Aligned_cols=60  Identities=27%  Similarity=0.289  Sum_probs=57.0

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLS   61 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~   61 (296)
                      .+|+|+|++|++|||+|++|++|+|+|+.++++|+++.+.+++...+++||+++|.+..+
T Consensus        50 ~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~~~ai~~~~t~~~l~~~~~~~Pt~se~~~~a  109 (110)
T PF02852_consen   50 FVKLIFDKKTGRILGAQIVGPNASELINELALAIQNGLTVEDLADDIFYHPTFSEAIQEA  109 (110)
T ss_dssp             EEEEEEETTTTBEEEEEEEETTHHHHHHHHHHHHHTTSBHHHHHTSBSSSTSTGHHHHHH
T ss_pred             eeEEEEEeeccceeeeeeecCchHHHHHHHHHHHHcCCCHHHHhCCeeeCCChhHHHHHh
Confidence            368999999999999999999999999999999999999999999999999999998754

; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B ....

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=99.31  E-value=1.2e-11  Score=114.69  Aligned_cols=108  Identities=21%  Similarity=0.293  Sum_probs=72.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..++|+|||||++|+++|.+|++.|++|+|+|  +.+      .+||.+.+                         +++.
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie--~~~------~~GG~l~~-------------------------gip~  178 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHSVTVFE--ALH------KPGGVVTY-------------------------GIPE  178 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEe--cCC------CCCcEeee-------------------------cCCC
Confidence            45799999999999999999999999999999  555      56775422                         1110


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCC-CCCCCCCCCCc
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGG-RPTYPDIPGAR  272 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~-~p~~p~i~G~~  272 (296)
                      . ..+. .+           .......+++.+++++.+...   ...+++++  ....+|+||+|||+ .|+.|++||.+
T Consensus       179 ~-~~~~-~~-----------~~~~~~~l~~~gv~~~~~~~v---~~~v~~~~--~~~~yd~viiAtGa~~p~~~~ipG~~  240 (449)
T TIGR01316       179 F-RLPK-EI-----------VVTEIKTLKKLGVTFRMNFLV---GKTATLEE--LFSQYDAVFIGTGAGLPKLMNIPGEE  240 (449)
T ss_pred             c-cCCH-HH-----------HHHHHHHHHhCCcEEEeCCcc---CCcCCHHH--HHhhCCEEEEeCCCCCCCcCCCCCCC
Confidence            0 1110 11           111223456679998876532   22333332  12468999999998 79999999976

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=99.29  E-value=1.8e-11  Score=121.12  Aligned_cols=129  Identities=18%  Similarity=0.192  Sum_probs=81.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      .+++|+||||||||++||++|+++|++|+|+|  +.+      .+||.+.+.  +|.                  +    
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~E--k~~------~lGG~l~~~--IP~------------------~----  583 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFE--KKE------KPGGVVKNI--IPE------------------F----  583 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEe--ccc------ccCceeeec--ccc------------------c----
Confidence            45799999999999999999999999999999  666      678865332  221                  0    


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCC-CCCCCCCCCc
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYPDIPGAR  272 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~-p~~p~i~G~~  272 (296)
                        .+.. +.           .......+...||+++.+..     ..++++. .....+|+||+|||++ +..+.+||.+
T Consensus       584 --rlp~-e~-----------l~~~ie~l~~~GVe~~~g~~-----~d~~ve~-l~~~gYDaVIIATGA~~~~~l~I~G~~  643 (1012)
T TIGR03315       584 --RISA-ES-----------IQKDIELVKFHGVEFKYGCS-----PDLTVAE-LKNQGYKYVILAIGAWKHGPLRLEGGG  643 (1012)
T ss_pred             --CCCH-HH-----------HHHHHHHHHhcCcEEEEecc-----cceEhhh-hhcccccEEEECCCCCCCCCCCcCCCC
Confidence              1110 00           11112344566898876531     1122311 1235689999999986 4456788876


Q ss_pred             cceeeccc----------CCCCCCcEEEeecc
Q psy7665         273 LLRTLSLL----------SGVDPPTLIFLEHI  294 (296)
Q Consensus       273 ~~~~~s~~----------~~~~~~~~~~~~~~  294 (296)
                      +.+.++..          .....++++||+++
T Consensus       644 ~~v~~avefL~~~~~~~~~~~~GK~VVVIGGG  675 (1012)
T TIGR03315       644 ERVLKSLEFLRAFKEGPTINPLGKHVVVVGGG  675 (1012)
T ss_pred             cceeeHHHHHHHhhccccccccCCeEEEECCC
Confidence            55555421          12356678888764

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.27  E-value=1.3e-11  Score=101.71  Aligned_cols=118  Identities=33%  Similarity=0.553  Sum_probs=69.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccccc
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKS  196 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~  196 (296)
                      ||+|||||++|+.||.+|++.|.+|+|+|  +.         ...+.+..|++...............            
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~--~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~------------   57 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIE--KS---------PGTPYNSGCIPSPLLVEIAPHRHEFL------------   57 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEES--SS---------SHHHHHHSHHHHHHHHHHHHHHHHHH------------
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEe--cc---------cccccccccccccccccccccccccc------------
Confidence            79999999999999999999999999999  22         22333333333322222111100000            


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEc-ceEEE--EeCCE-------EEE--cceeEEEEeCeEEEcCCCCCC
Q psy7665         197 FTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFN-AKAVF--VDKHR-------VKF--AGEERTVSAQNFIIAVGGRPT  264 (296)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~--~~~~~-------v~v--~g~~~~~~a~~vV~AtG~~p~  264 (296)
                                 . .+.+  .+...+...++++.. .....  .....       +..  .+...++.||+||+|||+.|+
T Consensus        58 -----------~-~~~~--~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~  123 (201)
T PF07992_consen   58 -----------P-ARLF--KLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPR  123 (201)
T ss_dssp             -----------H-HHHG--HHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEE
T ss_pred             -----------c-cccc--ccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccc
Confidence                       0 0000  223333445677732 33222  12221       222  344578999999999999999


Q ss_pred             CCCCCCC
Q psy7665         265 YPDIPGA  271 (296)
Q Consensus       265 ~p~i~G~  271 (296)
                      .|++||.
T Consensus       124 ~~~i~g~  130 (201)
T PF07992_consen  124 TPNIPGE  130 (201)
T ss_dssp             EESSTTT
T ss_pred             eeecCCC
Confidence            9999997

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.25  E-value=2.3e-11  Score=122.05  Aligned_cols=110  Identities=17%  Similarity=0.301  Sum_probs=72.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      .+++|+||||||||++||.+|+++|++|+|||  +.+      .+||...                         +|++.
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E--~~~------~~GG~l~-------------------------~gip~  475 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYE--ALH------VVGGVLQ-------------------------YGIPS  475 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEe--cCC------CCcceee-------------------------ccCCc
Confidence            45799999999999999999999999999999  665      6666321                         12221


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCC-CCCCCCCCCCc
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGG-RPTYPDIPGAR  272 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~-~p~~p~i~G~~  272 (296)
                      . ...            .++.....+.++..|+++..+...   ...++++.-.....+|+||+|||+ .|+.++|||.+
T Consensus       476 ~-rl~------------~e~~~~~~~~l~~~Gv~~~~~~~v---g~~~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~  539 (1006)
T PRK12775        476 F-RLP------------RDIIDREVQRLVDIGVKIETNKVI---GKTFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEF  539 (1006)
T ss_pred             c-CCC------------HHHHHHHHHHHHHCCCEEEeCCcc---CCccCHHHHhhccCCCEEEEecCCCCCCCCCCCCcC
Confidence            0 000            011122344566779999876431   122332210012458999999998 58889999975

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=4.1e-11  Score=103.00  Aligned_cols=145  Identities=19%  Similarity=0.229  Sum_probs=88.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEE-eccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALF-DFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFH  192 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~ii-E~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~  192 (296)
                      ..|||+||||||+|.+||.|.+++|.++-++ |           .+||+....-.+..                 +-+.+
T Consensus       210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ae-----------rfGGQvldT~~IEN-----------------fIsv~  261 (520)
T COG3634         210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAE-----------RFGGQVLDTMGIEN-----------------FISVP  261 (520)
T ss_pred             CCceEEEEcCCcchhHHHHHHHhhcchhhhhhh-----------hhCCeeccccchhh-----------------eeccc
Confidence            5699999999999999999999999987555 5           78886643322110                 00011


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE-cceeEEEEeCeEEEcCCCCCCCCCCCCC
Q psy7665         193 MKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPGA  271 (296)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~i~G~  271 (296)
                         ....+.+...++.+.+++...+++.-+..+++  . .....+-..|+. +|  -.++++.+|+|||++.+..++||.
T Consensus       262 ---~teGpkl~~ale~Hv~~Y~vDimn~qra~~l~--~-a~~~~~l~ev~l~nG--avLkaktvIlstGArWRn~nvPGE  333 (520)
T COG3634         262 ---ETEGPKLAAALEAHVKQYDVDVMNLQRASKLE--P-AAVEGGLIEVELANG--AVLKARTVILATGARWRNMNVPGE  333 (520)
T ss_pred             ---cccchHHHHHHHHHHhhcCchhhhhhhhhcce--e-cCCCCccEEEEecCC--ceeccceEEEecCcchhcCCCCch
Confidence               22344555555555555433222211111111  0 000011234555 67  779999999999999999999998


Q ss_pred             ccc-------eeecccCCCCCCcEEEeecc
Q psy7665         272 RLL-------RTLSLLSGVDPPTLIFLEHI  294 (296)
Q Consensus       272 ~~~-------~~~s~~~~~~~~~~~~~~~~  294 (296)
                      +++       +-+|.--+-..++.++|+++
T Consensus       334 ~e~rnKGVayCPHCDGPLF~gK~VAVIGGG  363 (520)
T COG3634         334 DEYRNKGVAYCPHCDGPLFKGKRVAVIGGG  363 (520)
T ss_pred             HHHhhCCeeeCCCCCCcccCCceEEEECCC
Confidence            855       33444344455677888765

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.22  E-value=9.5e-11  Score=100.41  Aligned_cols=134  Identities=22%  Similarity=0.271  Sum_probs=73.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..+||+||||||+|+.||++|++.|++|+|+|  +...+|.....||..     .+......     .....+..+++++
T Consensus        24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liE--k~~~~Ggg~~~gg~~-----~~~~~v~~-----~~~~~l~~~gv~~   91 (257)
T PRK04176         24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFE--RKLSFGGGMWGGGML-----FNKIVVQE-----EADEILDEFGIRY   91 (257)
T ss_pred             ccCCEEEECccHHHHHHHHHHHhCCCeEEEEe--cCCCCCCccccCccc-----cccccchH-----HHHHHHHHCCCCc
Confidence            56899999999999999999999999999999  565333221112211     11111110     1122233344443


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEE---EeCC-EE---EEc-------c---eeEEEEeCeEE
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVF---VDKH-RV---KFA-------G---EERTVSAQNFI  256 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~-~v---~v~-------g---~~~~~~a~~vV  256 (296)
                      ....+.. +    ......+...+...+.+.|++++.++...   .++. .+   .++       +   ....+.|+.||
T Consensus        92 ~~~~~g~-~----~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI  166 (257)
T PRK04176         92 KEVEDGL-Y----VADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVV  166 (257)
T ss_pred             eeecCcc-e----eccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEE
Confidence            2210000 0    00113334445666677899998764311   1122 22   111       1   12578999999


Q ss_pred             EcCCCCCC
Q psy7665         257 IAVGGRPT  264 (296)
Q Consensus       257 ~AtG~~p~  264 (296)
                      +|||....
T Consensus       167 ~ATG~~a~  174 (257)
T PRK04176        167 DATGHDAE  174 (257)
T ss_pred             EEeCCCcH
Confidence            99996443

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.21  E-value=2.2e-11  Score=111.11  Aligned_cols=144  Identities=19%  Similarity=0.213  Sum_probs=77.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeec---cCCCchhHHHHhhhhHHHhhcccccC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVN---VGCIPKKLFHRASLLNEEATTSDNFG  190 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~---~~~~p~~~~~~~~~~~~~~~~~~~~g  190 (296)
                      +.|||+||||||||++||+.|++.|.+|+|+|  +.+.+|.+.-.|+....   ....|....    .+...+.....+-
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlE--k~~~~G~k~~~~~~~~~~~l~~l~~~~~~----~i~~~v~~~~~~~   75 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLE--KGSEPGAKPCCGGGLSPRALEELIPDFDE----EIERKVTGARIYF   75 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEe--cCCCCCCCccccceechhhHHHhCCCcch----hhheeeeeeEEEe
Confidence            56899999999999999999999999999999  77766665333221110   011111000    0001111100000


Q ss_pred             ccccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEE---EeCCEE--EE-cceeEEEEeCeEEEcCCCCC
Q psy7665         191 FHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVF---VDKHRV--KF-AGEERTVSAQNFIIAVGGRP  263 (296)
Q Consensus       191 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~v--~v-~g~~~~~~a~~vV~AtG~~p  263 (296)
                       +... .+..+. .....-....+..++....++.|++++.++...   .+...+  .+ .+. .++.||.||.|+|.++
T Consensus        76 -~~~~~~~~~~~-~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~a~~vI~AdG~~s  152 (396)
T COG0644          76 -PGEKVAIEVPV-GEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGD-DEVRAKVVIDADGVNS  152 (396)
T ss_pred             -cCCceEEecCC-CceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCC-EEEEcCEEEECCCcch
Confidence             0000 000000 000000123345566777788899998765422   222222  22 222 6899999999999766


Q ss_pred             CCC
Q psy7665         264 TYP  266 (296)
Q Consensus       264 ~~p  266 (296)
                      .+.
T Consensus       153 ~l~  155 (396)
T COG0644         153 ALA  155 (396)
T ss_pred             HHH
Confidence            544

>PLN02852 ferredoxin-NADP+ reductase

Probab=99.21  E-value=1.2e-10  Score=108.02  Aligned_cols=109  Identities=16%  Similarity=0.317  Sum_probs=68.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHh--CCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAAS--MNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGF  191 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~--~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~  191 (296)
                      ...+|+||||||||++||..|++  .|++|+|||  +.+      ..||...+ +..|.                     
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E--~~p------~pgGlvr~-gvaP~---------------------   74 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIE--RLP------TPFGLVRS-GVAPD---------------------   74 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEe--cCC------CCcceEee-ccCCC---------------------
Confidence            34589999999999999999987  799999999  666      66774322 11121                     


Q ss_pred             cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCCC-CCCCCCC
Q psy7665         192 HMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRP-TYPDIPG  270 (296)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~p-~~p~i~G  270 (296)
                             +.....    ....    +...+...+++++.+...   ...++++.  ....+|+||+|||+.+ ..++|||
T Consensus        75 -------~~~~k~----v~~~----~~~~~~~~~v~~~~nv~v---g~dvtl~~--L~~~yDaVIlAtGa~~~~~l~IpG  134 (491)
T PLN02852         75 -------HPETKN----VTNQ----FSRVATDDRVSFFGNVTL---GRDVSLSE--LRDLYHVVVLAYGAESDRRLGIPG  134 (491)
T ss_pred             -------cchhHH----HHHH----HHHHHHHCCeEEEcCEEE---CccccHHH--HhhhCCEEEEecCCCCCCCCCCCC
Confidence                   111111    1111    122334457877654321   12233322  2246899999999975 6788999


Q ss_pred             Cc
Q psy7665         271 AR  272 (296)
Q Consensus       271 ~~  272 (296)
                      .+
T Consensus       135 ~d  136 (491)
T PLN02852        135 ED  136 (491)
T ss_pred             CC
Confidence            76

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=99.20  E-value=1.7e-10  Score=107.24  Aligned_cols=130  Identities=19%  Similarity=0.273  Sum_probs=81.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..++|+|||||++|+++|..|+++|++|+|+|  +.+      .+||.+.+.  +|.                  +    
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie--~~~------~~gG~l~~g--ip~------------------~----  186 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFE--ARD------KAGGLLRYG--IPE------------------F----  186 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEc--cCC------CCCcEeecc--CCC------------------c----
Confidence            45799999999999999999999999999999  665      566643221  110                  0    


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCC-CCCCCCCCCc
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYPDIPGAR  272 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~-p~~p~i~G~~  272 (296)
                        ... .           .+.......+++.+++++.++..   ...+++++  ..+.+|+||+|||+. |..+++||.+
T Consensus       187 --~~~-~-----------~~~~~~~~~l~~~gv~~~~~~~v---~~~v~~~~--~~~~~d~vvlAtGa~~~~~~~i~G~~  247 (457)
T PRK11749        187 --RLP-K-----------DIVDREVERLLKLGVEIRTNTEV---GRDITLDE--LRAGYDAVFIGTGAGLPRFLGIPGEN  247 (457)
T ss_pred             --cCC-H-----------HHHHHHHHHHHHcCCEEEeCCEE---CCccCHHH--HHhhCCEEEEccCCCCCCCCCCCCcc
Confidence              000 0           11112234456678998776532   12233322  226799999999984 7778899876


Q ss_pred             -cceeecc------------cCCCCCCcEEEeecc
Q psy7665         273 -LLRTLSL------------LSGVDPPTLIFLEHI  294 (296)
Q Consensus       273 -~~~~~s~------------~~~~~~~~~~~~~~~  294 (296)
                       ..+.+..            ......++++|++++
T Consensus       248 ~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG  282 (457)
T PRK11749        248 LGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGG  282 (457)
T ss_pred             CCCcEEHHHHHHHHhhccccccCCCCCeEEEECCC
Confidence             2333321            112246678887754

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.20  E-value=4.5e-10  Score=113.17  Aligned_cols=137  Identities=17%  Similarity=0.192  Sum_probs=81.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..+||+||||||||++||.++++.|++|+|+|  +.+      .+||.+.....                      .++ 
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD--~~~------~~GG~~~~~~~----------------------~~~-  210 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGARVILVD--EQP------EAGGSLLSEAE----------------------TID-  210 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEe--cCC------CCCCeeecccc----------------------ccC-
Confidence            35799999999999999999999999999999  666      66775532210                      000 


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CcEEEcceEEE-E-eCCEEEE------------c----ceeEEEEeCe
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKN-KIDYFNAKAVF-V-DKHRVKF------------A----GEERTVSAQN  254 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~-~-~~~~v~v------------~----g~~~~~~a~~  254 (296)
                        ..+...+           ...+...+... +++++.++..+ . +...+..            .    +....+.+|.
T Consensus       211 --g~~~~~~-----------~~~~~~~l~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~  277 (985)
T TIGR01372       211 --GKPAADW-----------AAATVAELTAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKR  277 (985)
T ss_pred             --CccHHHH-----------HHHHHHHHhcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCE
Confidence              0011111           11122333433 47776543222 1 1111110            0    1112689999


Q ss_pred             EEEcCCCCCCCCCCCCCcc-ceeec-----c---cCCCCCCcEEEeecc
Q psy7665         255 FIIAVGGRPTYPDIPGARL-LRTLS-----L---LSGVDPPTLIFLEHI  294 (296)
Q Consensus       255 vV~AtG~~p~~p~i~G~~~-~~~~s-----~---~~~~~~~~~~~~~~~  294 (296)
                      ||+|||+.++.|++||.+. .+++.     +   +.....++++|+..+
T Consensus       278 VILATGa~~r~~pipG~~~pgV~~~~~~~~~l~~~~~~~gk~VvViG~G  326 (985)
T TIGR01372       278 VVLATGAHERPLVFANNDRPGVMLAGAARTYLNRYGVAPGKRIVVATNN  326 (985)
T ss_pred             EEEcCCCCCcCCCCCCCCCCCcEEchHHHHHHHhhCcCCCCeEEEECCC
Confidence            9999999999999999763 34443     1   112234667777643

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR02028 ChlP geranylgeranyl reductase

Probab=99.20  E-value=7.6e-11  Score=107.66  Aligned_cols=141  Identities=18%  Similarity=0.238  Sum_probs=76.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhh----HHHhhcccccCc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLL----NEEATTSDNFGF  191 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~----~~~~~~~~~~g~  191 (296)
                      +||+||||||+|++||..|+++|++|+|+|  +...++      ..|  .+++|...+.+....    ...+.....+. 
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE--~~~~~~------~~c--g~~i~~~~l~~~g~~~~~~~~~i~~~~~~~-   69 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLE--RKPDNA------KPC--GGAIPLCMVDEFALPRDIIDRRVTKMKMIS-   69 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEe--cCCCCC------CCc--cccccHhhHhhccCchhHHHhhhceeEEec-
Confidence            589999999999999999999999999999  444222      222  233443333221110    11111111100 


Q ss_pred             cccccCCHHH---HHHHH-HHHHHHHHHHHHHHHHHCCcEEEcceEEEE-------eCCEEEE---c-----ceeEEEEe
Q psy7665         192 HMKKSFTWKT---LVDNV-QKYIRNLNNNYEKELEKNKIDYFNAKAVFV-------DKHRVKF---A-----GEERTVSA  252 (296)
Q Consensus       192 ~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~~~~v~v---~-----g~~~~~~a  252 (296)
                      +.....++..   ...+. .-....+...+...+.+.|++++.++....       +...+++   +     ++..++.|
T Consensus        70 p~~~~~~~~~~~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a  149 (398)
T TIGR02028        70 PSNIAVDIGRTLKEHEYIGMLRREVLDSFLRRRAADAGATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEV  149 (398)
T ss_pred             CCceEEEeccCCCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEe
Confidence            0000000000   00000 011234455566777788999987764322       1123443   1     33457999


Q ss_pred             CeEEEcCCCCCCCCC
Q psy7665         253 QNFIIAVGGRPTYPD  267 (296)
Q Consensus       253 ~~vV~AtG~~p~~p~  267 (296)
                      +.||.|+|.++.+..
T Consensus       150 ~~VIgADG~~S~v~~  164 (398)
T TIGR02028       150 DAVIGADGANSRVAK  164 (398)
T ss_pred             CEEEECCCcchHHHH
Confidence            999999998776644

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=99.17  E-value=1.1e-10  Score=105.46  Aligned_cols=112  Identities=20%  Similarity=0.296  Sum_probs=71.2

Q ss_pred             cEEEECCChHHHHHHHHHHhC---CCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         117 DLCVIGGGSGGISAAKEAASM---NKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~---G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      +|||||||++|+.+|.+++++   +.+|+|+|  +.+      ..    ....+.|..           .     .|   
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~--~~~------~~----~~~~~~~~~-----------~-----~g---   49 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLIN--PSS------TT----PYSGMLPGM-----------I-----AG---   49 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEEC--CCC------CC----cccchhhHH-----------H-----he---
Confidence            489999999999999999754   68999999  433      00    000000000           0     00   


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEe--CCEEEE-cceeEEEEeCeEEEcCCCCCCCCCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVD--KHRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPG  270 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~i~G  270 (296)
                        ..+.           +++...+...+++.+++++.+++..++  .+.|.+ ++  .++.+|+||+|||+.|..|++||
T Consensus        50 --~~~~-----------~~~~~~~~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g--~~~~yD~LviAtG~~~~~~~i~g  114 (364)
T TIGR03169        50 --HYSL-----------DEIRIDLRRLARQAGARFVIAEATGIDPDRRKVLLANR--PPLSYDVLSLDVGSTTPLSGVEG  114 (364)
T ss_pred             --eCCH-----------HHhcccHHHHHHhcCCEEEEEEEEEEecccCEEEECCC--CcccccEEEEccCCCCCCCCCCc
Confidence              0000           111222334456678999887765543  445666 55  56899999999999999999999


Q ss_pred             Cccc
Q psy7665         271 ARLL  274 (296)
Q Consensus       271 ~~~~  274 (296)
                      ..+.
T Consensus       115 ~~~~  118 (364)
T TIGR03169       115 AADL  118 (364)
T ss_pred             cccc
Confidence            6554

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.16  E-value=8.9e-11  Score=108.20  Aligned_cols=47  Identities=23%  Similarity=0.280  Sum_probs=39.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      ..|||+||||||+|++||+.|+++|++|+|+|  +.+.++.|...||.+
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llE--r~~~~g~k~~~gg~l   50 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIE--RGNSAGAKNVTGGRL   50 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEE--cCCCCCCccccccee
Confidence            35899999999999999999999999999999  666666664455543

>PRK10015 oxidoreductase; Provisional

Probab=99.15  E-value=8.7e-11  Score=108.22  Aligned_cols=47  Identities=26%  Similarity=0.302  Sum_probs=39.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      ..|||+||||||+|++||+.|++.|++|+|+|  +.+.+|.|...||.+
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliE--r~~~~g~k~~~gg~i   50 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIE--RGDSAGCKNMTGGRL   50 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHhCCCeEEEEe--cCCCCCcccccCcee
Confidence            35899999999999999999999999999999  666677765455543

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=99.15  E-value=2.8e-10  Score=106.12  Aligned_cols=108  Identities=21%  Similarity=0.346  Sum_probs=70.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      .+++|+||||||+|+++|.+|+++|++|+|+|  +.+      .+||.+..  .+|.                  +    
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie--~~~------~~GG~l~~--gip~------------------~----  189 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFE--RAD------RIGGLLRY--GIPD------------------F----  189 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEe--cCC------CCCceeee--cCCc------------------c----
Confidence            45799999999999999999999999999999  666      66774321  1111                  0    


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCC-CCCCCCCCCc
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYPDIPGAR  272 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~-p~~p~i~G~~  272 (296)
                        .... ..           .......+.+.|++++.++....   .+..+.  ....+|+||+|||+. |..+++||.+
T Consensus       190 --~~~~-~~-----------~~~~~~~~~~~gv~~~~~~~v~~---~~~~~~--~~~~~d~vvlAtGa~~~~~l~ipG~~  250 (471)
T PRK12810        190 --KLEK-EV-----------IDRRIELMEAEGIEFRTNVEVGK---DITAEE--LLAEYDAVFLGTGAYKPRDLGIPGRD  250 (471)
T ss_pred             --cCCH-HH-----------HHHHHHHHHhCCcEEEeCCEECC---cCCHHH--HHhhCCEEEEecCCCCCCcCCCCCcc
Confidence              0010 11           11122345667999877553211   111111  234789999999996 7778899976

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=99.14  E-value=2.3e-10  Score=106.14  Aligned_cols=135  Identities=21%  Similarity=0.295  Sum_probs=77.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--CcEEEEeccCCCCCCcccccCC-eeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         117 DLCVIGGGSGGISAAKEAASMN--KKVALFDFVTPSQHGTVWGLGG-TCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE~~~~~~~g~~~~~GG-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      +|+|||||++|+++|..|++.+  .+|+|||  +.+      ..+- .|.    .|                  .+  ..
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~--~~~------~~~~~~~~----~~------------------~~--~~   49 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYE--KTD------IVSFGACG----LP------------------YF--VG   49 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEE--CCC------cceeecCC----Cc------------------eE--ec
Confidence            6999999999999999999876  4899999  444      1110 000    00                  00  00


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcc-eEEEE--eCCEEEE-c---ceeEEEEeCeEEEcCCCCCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA-KAVFV--DKHRVKF-A---GEERTVSAQNFIIAVGGRPTYP  266 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~--~~~~v~v-~---g~~~~~~a~~vV~AtG~~p~~p  266 (296)
                      . ....          ...+.......+++.+++++.+ ++..+  +.+.+.+ +   +....+.||++|+|||++|..|
T Consensus        50 ~-~~~~----------~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~  118 (444)
T PRK09564         50 G-FFDD----------PNTMIARTPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIP  118 (444)
T ss_pred             c-ccCC----------HHHhhcCCHHHHHHCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCC
Confidence            0 0000          0000111123355668988644 44333  3456666 2   3222344999999999999999


Q ss_pred             CCCCCc-cceeecc-----cC------CCCCCcEEEeecc
Q psy7665         267 DIPGAR-LLRTLSL-----LS------GVDPPTLIFLEHI  294 (296)
Q Consensus       267 ~i~G~~-~~~~~s~-----~~------~~~~~~~~~~~~~  294 (296)
                      ++||.+ +.+.+..     +.      ...++++++++++
T Consensus       119 ~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG  158 (444)
T PRK09564        119 PIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAG  158 (444)
T ss_pred             CCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCC
Confidence            999976 3443321     11      1246778887654

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=99.14  E-value=3.8e-10  Score=106.15  Aligned_cols=32  Identities=44%  Similarity=0.678  Sum_probs=30.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..|||+|||||||||+||..+++.|.+|+++|
T Consensus         3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE   34 (618)
T PRK05192          3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLT   34 (618)
T ss_pred             ccceEEEECchHHHHHHHHHHHHcCCcEEEEe
Confidence            45899999999999999999999999999999

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.13  E-value=3.4e-10  Score=96.73  Aligned_cols=35  Identities=26%  Similarity=0.427  Sum_probs=32.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      .++||+||||||+|+.||++|++.|.+|+|+|  +..
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlE--k~~   54 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLE--RSL   54 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEe--cCC
Confidence            56899999999999999999999999999999  666

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.13  E-value=2.2e-10  Score=100.00  Aligned_cols=30  Identities=40%  Similarity=0.653  Sum_probs=29.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      |||+|||||++|+++|..|++.|.+|+|+|
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie   30 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLE   30 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEe
Confidence            699999999999999999999999999999

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=99.12  E-value=6.8e-10  Score=102.29  Aligned_cols=117  Identities=21%  Similarity=0.329  Sum_probs=73.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ...+|||||||++|+.+|..|.+.+.+|+|||  +.+      ..    .+..+.|.               .. .|   
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~--~~~------~~----~~~~~l~~---------------~~-~g---   57 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVIS--PRN------HM----LFTPLLPQ---------------TT-TG---   57 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEc--CCC------Cc----chhhhHHH---------------hc-cc---
Confidence            34589999999999999999987789999999  433      00    00000000               00 00   


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEe--CCEEEE----c-----ceeEEEEeCeEEEcCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVD--KHRVKF----A-----GEERTVSAQNFIIAVGGR  262 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~v~v----~-----g~~~~~~a~~vV~AtG~~  262 (296)
                        ..+.           +.....+...+...+++++.+++..++  ...|.+    .     +...++.||++|+|||+.
T Consensus        58 --~~~~-----------~~~~~~~~~~~~~~~~~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~  124 (424)
T PTZ00318         58 --TLEF-----------RSICEPVRPALAKLPNRYLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGAR  124 (424)
T ss_pred             --CCCh-----------HHhHHHHHHHhccCCeEEEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcc
Confidence              0011           111112334455567888887765543  445655    1     122579999999999999


Q ss_pred             CCCCCCCCCccc
Q psy7665         263 PTYPDIPGARLL  274 (296)
Q Consensus       263 p~~p~i~G~~~~  274 (296)
                      |..|.+||.++.
T Consensus       125 ~~~~~ipG~~e~  136 (424)
T PTZ00318        125 PNTFNIPGVEER  136 (424)
T ss_pred             cCCCCCCCHHHc
Confidence            999999998654

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=99.12  E-value=3.2e-10  Score=101.40  Aligned_cols=29  Identities=48%  Similarity=0.687  Sum_probs=26.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ||+|||||+|||+||+.+++.|.+|+|+.
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit   29 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLIT   29 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEe
Confidence            79999999999999999999999999994

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=99.12  E-value=7.4e-10  Score=100.54  Aligned_cols=113  Identities=18%  Similarity=0.265  Sum_probs=68.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC--CcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMN--KKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      .+|||||||+||+.+|..|++.+  .+|+|++  +.+..    .      +                      ....+  
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~--~~~~~----~------y----------------------~~~~l--   46 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLIT--ADSGD----E------Y----------------------NKPDL--   46 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEe--CCCCC----C------c----------------------CcCcC--
Confidence            48999999999999999998864  5799998  32200    0      0                      00000  


Q ss_pred             cccCCHHHHHHHHHHHHHHHHH-HHHHHHHHCCcEEEcc-eEEEEe--CCEEEEcceeEEEEeCeEEEcCCCCCCCCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNN-NYEKELEKNKIDYFNA-KAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIP  269 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~-~~~~~~--~~~v~v~g~~~~~~a~~vV~AtG~~p~~p~i~  269 (296)
                            ...... ....+.+.. .....+++.+++++.+ ++..++  .+.+.+++  ..+.||+||+|||++|..|++|
T Consensus        47 ------~~~~~~-~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~--~~~~yd~LVlATG~~~~~p~i~  117 (377)
T PRK04965         47 ------SHVFSQ-GQRADDLTRQSAGEFAEQFNLRLFPHTWVTDIDAEAQVVKSQG--NQWQYDKLVLATGASAFVPPIP  117 (377)
T ss_pred             ------cHHHhC-CCCHHHhhcCCHHHHHHhCCCEEECCCEEEEEECCCCEEEECC--eEEeCCEEEECCCCCCCCCCCC
Confidence                  000000 000011110 1223345668998764 443333  34555566  5799999999999999999999


Q ss_pred             CCcc
Q psy7665         270 GARL  273 (296)
Q Consensus       270 G~~~  273 (296)
                      |.+.
T Consensus       118 G~~~  121 (377)
T PRK04965        118 GREL  121 (377)
T ss_pred             CCce
Confidence            9765

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.12  E-value=1.9e-10  Score=112.40  Aligned_cols=32  Identities=25%  Similarity=0.369  Sum_probs=30.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+.+|+||||||||++||++|+++|++|+|+|
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E  413 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAID  413 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEc
Confidence            56799999999999999999999999999999

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=99.12  E-value=4.2e-10  Score=108.77  Aligned_cols=130  Identities=18%  Similarity=0.259  Sum_probs=79.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..++|+||||||+|+++|..|++.|++|+|+|  +.+      .+||.+...  +|.                  +    
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e--~~~------~~GG~l~~g--ip~------------------~----  239 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFD--ANE------QAGGMMRYG--IPR------------------F----  239 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEe--cCC------CCCceeeec--CCC------------------C----
Confidence            45799999999999999999999999999999  666      667754221  110                  0    


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCCC-CCCCCCCCc
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRP-TYPDIPGAR  272 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~p-~~p~i~G~~  272 (296)
                        .. ...+.           ......+...|+++..+...   ...+++++  ....+|+||+|||+++ ..+++||.+
T Consensus       240 --~~-~~~~~-----------~~~~~~l~~~Gv~i~~~~~v---~~dv~~~~--~~~~~DaVilAtGa~~~~~~~ipG~~  300 (652)
T PRK12814        240 --RL-PESVI-----------DADIAPLRAMGAEFRFNTVF---GRDITLEE--LQKEFDAVLLAVGAQKASKMGIPGEE  300 (652)
T ss_pred             --CC-CHHHH-----------HHHHHHHHHcCCEEEeCCcc---cCccCHHH--HHhhcCEEEEEcCCCCCCCCCCCCcC
Confidence              00 01111           11223445668888765421   11122222  1234899999999975 567899976


Q ss_pred             c-ceeec--cc-------CCCCCCcEEEeecc
Q psy7665         273 L-LRTLS--LL-------SGVDPPTLIFLEHI  294 (296)
Q Consensus       273 ~-~~~~s--~~-------~~~~~~~~~~~~~~  294 (296)
                      . .+++.  ++       .....+++++|+++
T Consensus       301 ~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG  332 (652)
T PRK12814        301 LPGVISGIDFLRNVALGTALHPGKKVVVIGGG  332 (652)
T ss_pred             cCCcEeHHHHHHHhhcCCcccCCCeEEEECCC
Confidence            3 33332  11       23345677777664

>KOG1335|consensus

Probab=99.11  E-value=1.7e-10  Score=100.34  Aligned_cols=63  Identities=25%  Similarity=0.342  Sum_probs=59.5

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHHh
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWIK   64 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~~   64 (296)
                      +.|.++|++|++|||+||+|++|+|||++.++|+..+.+.+|+++..++|||++|.++.+...
T Consensus       435 ~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvchaHPTlSEa~kEa~~a  497 (506)
T KOG1335|consen  435 FVKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVCHAHPTLSEAFKEANMA  497 (506)
T ss_pred             eeEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHhhccCCCCcHHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999999999999877653

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.11  E-value=2.2e-10  Score=92.75  Aligned_cols=48  Identities=27%  Similarity=0.405  Sum_probs=37.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCC-eeeccCCCc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGG-TCVNVGCIP  169 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG-~~~~~~~~p  169 (296)
                      ...||+|+||||+|++||++|++.|.+|+|+|  ++.      .+|| .|.-...+|
T Consensus        29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E--~~l------s~GGG~w~GGmlf~   77 (262)
T COG1635          29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFE--RKL------SFGGGIWGGGMLFN   77 (262)
T ss_pred             hhccEEEECcCcchHHHHHHHHhCCceEEEEE--eec------ccCCcccccccccc
Confidence            34599999999999999999999999999999  555      5544 664433333

>KOG0404|consensus

Probab=99.09  E-value=1e-09  Score=89.11  Aligned_cols=122  Identities=22%  Similarity=0.288  Sum_probs=83.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK  194 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~  194 (296)
                      ..+|+|||.||++..||++++++..+.+++|.-+..    ....||+....-.+                 -++.||+. 
T Consensus         8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~----~i~pGGQLtTTT~v-----------------eNfPGFPd-   65 (322)
T KOG0404|consen    8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMAN----GIAPGGQLTTTTDV-----------------ENFPGFPD-   65 (322)
T ss_pred             eeeEEEEccCchHHHHHHHHhhcccCceEEeeeecc----CcCCCceeeeeecc-----------------ccCCCCCc-
Confidence            348999999999999999999999999999943322    01347766443221                 23345554 


Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEE----eCCEEEEcceeEEEEeCeEEEcCCCCCCCCCCCC
Q psy7665         195 KSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFV----DKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG  270 (296)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~v~v~g~~~~~~a~~vV~AtG~~p~~p~i~G  270 (296)
                       .+..+++.+.++++..++           |.++++.++...    .++.+.++.  +.+.+|.||+|||+..+...+||
T Consensus        66 -gi~G~~l~d~mrkqs~r~-----------Gt~i~tEtVskv~~sskpF~l~td~--~~v~~~avI~atGAsAkRl~~pg  131 (322)
T KOG0404|consen   66 -GITGPELMDKMRKQSERF-----------GTEIITETVSKVDLSSKPFKLWTDA--RPVTADAVILATGASAKRLHLPG  131 (322)
T ss_pred             -ccccHHHHHHHHHHHHhh-----------cceeeeeehhhccccCCCeEEEecC--CceeeeeEEEecccceeeeecCC
Confidence             556667776666655554           777777654322    233343344  67899999999999888888888


Q ss_pred             Cc
Q psy7665         271 AR  272 (296)
Q Consensus       271 ~~  272 (296)
                      ..
T Consensus       132 ~g  133 (322)
T KOG0404|consen  132 EG  133 (322)
T ss_pred             CC
Confidence            73

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=99.08  E-value=1.2e-09  Score=102.20  Aligned_cols=108  Identities=19%  Similarity=0.302  Sum_probs=71.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      .+++|+|||||++|+++|.+|++.|++|+|+|  +.+      .+||.+.+                         +++.
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e--~~~------~~gG~l~~-------------------------gip~  188 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFE--RED------RCGGLLMY-------------------------GIPN  188 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEe--cCC------CCCceeec-------------------------cCCC
Confidence            45699999999999999999999999999999  555      56664321                         1110


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCC-CCCCCCCCCc
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYPDIPGAR  272 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~-p~~p~i~G~~  272 (296)
                      . ..+. .           +.....+.+++.|++++.+....   ..+..+.  ....+|+||+|||+. |..+++||.+
T Consensus       189 ~-~~~~-~-----------~~~~~~~~~~~~Gv~~~~~~~v~---~~~~~~~--~~~~~d~VilAtGa~~~~~l~i~G~~  250 (485)
T TIGR01317       189 M-KLDK-A-----------IVDRRIDLLSAEGIDFVTNTEIG---VDISADE--LKEQFDAVVLAGGATKPRDLPIPGRE  250 (485)
T ss_pred             c-cCCH-H-----------HHHHHHHHHHhCCCEEECCCEeC---CccCHHH--HHhhCCEEEEccCCCCCCcCCCCCcC
Confidence            0 0010 0           11112345566799998765321   1111111  235789999999997 8889999976

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=99.08  E-value=4.1e-10  Score=102.84  Aligned_cols=133  Identities=12%  Similarity=0.080  Sum_probs=76.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC--cEEEEeccCCCCCCcccccCCeeeccCC-CchhHHHHhhhhHHHhhcccccCcc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK--KVALFDFVTPSQHGTVWGLGGTCVNVGC-IPKKLFHRASLLNEEATTSDNFGFH  192 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE~~~~~~~g~~~~~GG~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~g~~  192 (296)
                      .+|+|||||++|++||..|++.|.  +|+|++  +.+      ...-    ..+ .+..++.               +  
T Consensus         4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~--~e~------~~~y----~r~~l~~~~~~---------------~--   54 (396)
T PRK09754          4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFS--DER------HLPY----ERPPLSKSMLL---------------E--   54 (396)
T ss_pred             CcEEEECChHHHHHHHHHHHhhCCCCCEEEeC--CCC------CCCC----CCCCCCHHHHC---------------C--
Confidence            479999999999999999999986  799999  332      0000    000 0000000               0  


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcce-EEEEe--CCEEEE-cceeEEEEeCeEEEcCCCCCCCCCC
Q psy7665         193 MKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK-AVFVD--KHRVKF-AGEERTVSAQNFIIAVGGRPTYPDI  268 (296)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~--~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~i  268 (296)
                           ......        .+  .-...+.+.+++++.++ +..++  .+.+.+ +|  ..+.||+||+|||++|+.|++
T Consensus        55 -----~~~~~~--------~~--~~~~~~~~~~i~~~~g~~V~~id~~~~~v~~~~g--~~~~yd~LViATGs~~~~~p~  117 (396)
T PRK09754         55 -----DSPQLQ--------QV--LPANWWQENNVHLHSGVTIKTLGRDTRELVLTNG--ESWHWDQLFIATGAAARPLPL  117 (396)
T ss_pred             -----CCcccc--------cc--CCHHHHHHCCCEEEcCCEEEEEECCCCEEEECCC--CEEEcCEEEEccCCCCCCCCC
Confidence                 000000        00  00122445689998764 33333  345555 45  579999999999999988777


Q ss_pred             CCCc-cceeec--c---c----CCCCCCcEEEeecc
Q psy7665         269 PGAR-LLRTLS--L---L----SGVDPPTLIFLEHI  294 (296)
Q Consensus       269 ~G~~-~~~~~s--~---~----~~~~~~~~~~~~~~  294 (296)
                      ++.. +.+++.  .   .    .....+++++++.+
T Consensus       118 ~~~~~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG  153 (396)
T PRK09754        118 LDALGERCFTLRHAGDAARLREVLQPERSVVIVGAG  153 (396)
T ss_pred             CCcCCCCEEecCCHHHHHHHHHHhhcCCeEEEECCC
Confidence            6543 334432  1   0    12235677777653

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=99.07  E-value=1.4e-09  Score=98.94  Aligned_cols=132  Identities=20%  Similarity=0.225  Sum_probs=69.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeec--c-CCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVN--V-GCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~--~-~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ||+|||||++|+++|+.|++.|++|+|+|  +.+      .+|+.+.+  + .+++...+..  ...........+.++.
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE--~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~   70 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIE--PHP------PIPGNHTYGVWDDDLSDLGLAD--CVEHVWPDVYEYRFPK   70 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEc--cCC------CCCCCccccccHhhhhhhchhh--HHhhcCCCceEEecCC
Confidence            79999999999999999999999999999  554      34443211  1 1111110000  0000000000011110


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEE--e-CC--EEEE-cceeEEEEeCeEEEcCCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFV--D-KH--RVKF-AGEERTVSAQNFIIAVGGRP  263 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~-~~--~v~v-~g~~~~~~a~~vV~AtG~~p  263 (296)
                      . .....  ..+..-....+...+.+.+.+.+++++.+++...  . ..  .+++ ++  ..+.|+.||.|+|..+
T Consensus        71 ~-~~~~~--~~~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g--~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        71 Q-PRKLG--TAYGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGG--QRIQARLVIDARGFGP  141 (388)
T ss_pred             c-chhcC--CceeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCC--CEEEeCEEEECCCCch
Confidence            0 00000  0010111233444555666667888876654332  1 22  2333 34  5799999999999876

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=99.07  E-value=7.4e-10  Score=99.60  Aligned_cols=114  Identities=25%  Similarity=0.369  Sum_probs=70.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ...+|+|||||++|+++|.+|++.|++|+++|  +.+      .+||.....  ++                  .+    
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie--~~~------~~gg~~~~~--~~------------------~~----   64 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYD--KLP------EPGGLMLFG--IP------------------EF----   64 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEe--CCC------CCCceeeec--Cc------------------cc----
Confidence            45699999999999999999999999999999  666      566643211  00                  00    


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEe-C------CE--EEE-cceeEEEEeCeEEEcCCC-C
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVD-K------HR--VKF-AGEERTVSAQNFIIAVGG-R  262 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~------~~--v~v-~g~~~~~~a~~vV~AtG~-~  262 (296)
                        ..+...           +. .....+.+.+++++.++..... .      ..  ... ..+...+.||+||+|||+ .
T Consensus        65 --~~~~~~-----------~~-~~~~~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~  130 (352)
T PRK12770         65 --RIPIER-----------VR-EGVKELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWK  130 (352)
T ss_pred             --ccCHHH-----------HH-HHHHHHHhCCeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCCC
Confidence              000000           11 1123344558888766443211 0      11  111 111124689999999999 5


Q ss_pred             CCCCCCCCCcc
Q psy7665         263 PTYPDIPGARL  273 (296)
Q Consensus       263 p~~p~i~G~~~  273 (296)
                      |..|++||.+.
T Consensus       131 ~~~~~ipg~~~  141 (352)
T PRK12770        131 SRKLGIPGEDL  141 (352)
T ss_pred             CCcCCCCCccc
Confidence            78899999763

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.07  E-value=2.1e-09  Score=87.54  Aligned_cols=35  Identities=31%  Similarity=0.569  Sum_probs=29.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      .++||+||||||+|++||++|++.|++|+++|  +..
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E--~~~   50 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIE--RKL   50 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHHTS-EEEEE--SSS
T ss_pred             ccCCEEEECCChhHHHHHHHHHHCCCeEEEEe--cCC
Confidence            56899999999999999999999999999999  666

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=99.07  E-value=8.7e-10  Score=108.90  Aligned_cols=132  Identities=18%  Similarity=0.215  Sum_probs=80.1

Q ss_pred             cEEEECCChHHHHHHHHHHhC----CCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcc
Q psy7665         117 DLCVIGGGSGGISAAKEAASM----NKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFH  192 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~----G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~  192 (296)
                      +|||||+|++|+.+|..|+++    +++|+||+  +.+      ...-    ..+.                      + 
T Consensus         5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~--~e~------~~~Y----~r~~----------------------L-   49 (847)
T PRK14989          5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFC--EEP------RIAY----DRVH----------------------L-   49 (847)
T ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEE--CCC------CCcc----cCCc----------------------c-
Confidence            799999999999999999764    47899999  443      1110    0000                      0 


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceE-EEEeC--CEEEE-cceeEEEEeCeEEEcCCCCCCCCCC
Q psy7665         193 MKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA-VFVDK--HRVKF-AGEERTVSAQNFIIAVGGRPTYPDI  268 (296)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~--~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~i  268 (296)
                             ..+...  ...+.+.......+++.+++++.++. ..++.  ..|.+ +|  ..+.||+||+|||++|+.|++
T Consensus        50 -------~~~~~~--~~~~~l~~~~~~~~~~~gI~~~~g~~V~~Id~~~~~V~~~~G--~~i~yD~LVIATGs~p~~p~i  118 (847)
T PRK14989         50 -------SSYFSH--HTAEELSLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAG--RTVFYDKLIMATGSYPWIPPI  118 (847)
T ss_pred             -------hHhHcC--CCHHHccCCCHHHHHhCCCEEEcCCEEEEEeCCCcEEEECCC--cEEECCEEEECCCCCcCCCCC
Confidence                   000000  00011111123445667999988753 33433  34444 44  578999999999999999999


Q ss_pred             CCCccc-eee--cc-------cCCCCCCcEEEeecc
Q psy7665         269 PGARLL-RTL--SL-------LSGVDPPTLIFLEHI  294 (296)
Q Consensus       269 ~G~~~~-~~~--s~-------~~~~~~~~~~~~~~~  294 (296)
                      ||.+.. +++  +.       ...+.+++.+||+++
T Consensus       119 pG~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG  154 (847)
T PRK14989        119 KGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGG  154 (847)
T ss_pred             CCCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCC
Confidence            998742 222  21       112356778887754

>PLN02463 lycopene beta cyclase

Probab=99.06  E-value=1.5e-09  Score=100.04  Aligned_cols=33  Identities=30%  Similarity=0.556  Sum_probs=31.2

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ...+||+||||||+|+++|..|++.|++|+|+|
T Consensus        26 ~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE   58 (447)
T PLN02463         26 SRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCID   58 (447)
T ss_pred             ccCceEEEECCCHHHHHHHHHHHHCCCeEEEec
Confidence            356899999999999999999999999999999

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=99.06  E-value=7.4e-10  Score=109.15  Aligned_cols=132  Identities=19%  Similarity=0.274  Sum_probs=78.6

Q ss_pred             EEEECCChHHHHHHHHHHhC---CCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665         118 LCVIGGGSGGISAAKEAASM---NKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK  194 (296)
Q Consensus       118 VvVIGgG~aG~~aA~~l~~~---G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~  194 (296)
                      |||||||+||+.+|.+|++.   +++|+|||  +.+      ..+.    ..+                      .+   
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~--~e~------~~~y----~r~----------------------~L---   43 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFG--EEP------HPNY----NRI----------------------LL---   43 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEe--CCC------CCCc----ccc----------------------cc---
Confidence            68999999999999999875   46899999  444      1111    000                      00   


Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcce-EEEEe--CCEEEE-cceeEEEEeCeEEEcCCCCCCCCCCCC
Q psy7665         195 KSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK-AVFVD--KHRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPG  270 (296)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~--~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~i~G  270 (296)
                           ..+..- ....+.+.....+.+++.+++++.++ +..++  .+.|.+ ++  .++.||+||+|||+.|+.|++||
T Consensus        44 -----~~~l~g-~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~Id~~~k~V~~~~g--~~~~yD~LVlATGs~p~~p~ipG  115 (785)
T TIGR02374        44 -----SSVLQG-EADLDDITLNSKDWYEKHGITLYTGETVIQIDTDQKQVITDAG--RTLSYDKLILATGSYPFILPIPG  115 (785)
T ss_pred             -----cHHHCC-CCCHHHccCCCHHHHHHCCCEEEcCCeEEEEECCCCEEEECCC--cEeeCCEEEECCCCCcCCCCCCC
Confidence                 000000 00001111112344566799998764 43333  345665 45  57999999999999999999999


Q ss_pred             Cccc-eee--cc-------cCCCCCCcEEEeecc
Q psy7665         271 ARLL-RTL--SL-------LSGVDPPTLIFLEHI  294 (296)
Q Consensus       271 ~~~~-~~~--s~-------~~~~~~~~~~~~~~~  294 (296)
                      .+.. +++  +.       -.....++.+||+++
T Consensus       116 ~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG  149 (785)
T TIGR02374       116 ADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGG  149 (785)
T ss_pred             CCCCCEEEeCCHHHHHHHHHHhhcCCeEEEECCC
Confidence            8642 322  11       012345677777654

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=99.05  E-value=3e-09  Score=102.25  Aligned_cols=148  Identities=18%  Similarity=0.229  Sum_probs=81.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCC---------------------CchhH
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGC---------------------IPKKL  172 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~---------------------~p~~~  172 (296)
                      ..+||+|||+|.||+.||+.+++.|.+|+|+||.....-++.+..||.+...+.                     -|...
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~s~~a~Ggi~a~~~~~~~Ds~e~~~~Dt~~~g~~~~d~~lv  128 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAI  128 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCchHHhhcCceeecCCCCCCCHHHHHHHHHHhhCCCCCHHHH
Confidence            567999999999999999999999999999994322211222233454422111                     11111


Q ss_pred             HHHhhhhHHHhhcccccCccccccCCH----HHHHH------------H----HHHHHHHHHHHHHHHHHHCCcEEEcce
Q psy7665         173 FHRASLLNEEATTSDNFGFHMKKSFTW----KTLVD------------N----VQKYIRNLNNNYEKELEKNKIDYFNAK  232 (296)
Q Consensus       173 ~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~------------~----~~~~~~~~~~~~~~~~~~~~v~~~~~~  232 (296)
                      ........+.+.++..+|+++....+.    .....            +    ....-..+...+...+.+.+++++...
T Consensus       129 ~~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~  208 (635)
T PLN00128        129 QYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLHTLYGQAMKHNTQFFVEY  208 (635)
T ss_pred             HHHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHHHHHHHHHhCCCEEEEee
Confidence            222223445566777788877531110    00000            0    000112233344555566789987654


Q ss_pred             E--E-EEe-CCEE---EE----cceeEEEEeCeEEEcCCC
Q psy7665         233 A--V-FVD-KHRV---KF----AGEERTVSAQNFIIAVGG  261 (296)
Q Consensus       233 ~--~-~~~-~~~v---~v----~g~~~~~~a~~vV~AtG~  261 (296)
                      .  . ..+ +..+   .+    +++...+.|+.||+|||.
T Consensus       209 ~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG  248 (635)
T PLN00128        209 FALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGG  248 (635)
T ss_pred             EEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCC
Confidence            3  2 222 2322   22    344567899999999996

>PLN02546 glutathione reductase

Probab=99.04  E-value=2.9e-09  Score=100.85  Aligned_cols=168  Identities=13%  Similarity=0.187  Sum_probs=105.8

Q ss_pred             HHHccCcCCCCChHHHHHHHHHhh--cCCCCceee----ccceeeeeeeccccCCccchhhhccCcceeeccccCCCCcc
Q psy7665          42 QDFDALIGIHPTCAEAISLSWIKG--YNIEPEVIK----LHTPYLVLAKARFLLPTLECQEVYHDGRFYDYLDNNFQTYD  115 (296)
Q Consensus        42 ~~l~~~i~~~pt~~e~l~v~~~~~--~~~~~~~~~----~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (296)
                      +.+.++..+|..+.+..++.+..+  +.++++.+.    .+.+|.+|+|+|+.+..+++++.+......+.+..+  ...
T Consensus       175 ~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v~G~~~~~D~LVIATGs~p~~P~IpG~~~v~~~~~~l~~~--~~~  252 (558)
T PLN02546        175 AELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDVDGKLYTARNILIAVGGRPFIPDIPGIEHAIDSDAALDLP--SKP  252 (558)
T ss_pred             HHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEECCEEEECCEEEEeCCCCCCCCCCCChhhccCHHHHHhcc--ccC
Confidence            345555556666666667777653  667887774    578999999999887666555443222222222221  123


Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKK  195 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~  195 (296)
                      .+|+|||||+.|+++|..+++.|.+|+|++  +.+      .+..                                   
T Consensus       253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~--~~~------~il~-----------------------------------  289 (558)
T PLN02546        253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFI--RQK------KVLR-----------------------------------  289 (558)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEE--ecc------cccc-----------------------------------
Confidence            489999999999999999999999999999  433      1000                                   


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceE-EEE---eCCEEEE-cceeEEEEeCeEEEcCCCCCCCC
Q psy7665         196 SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA-VFV---DKHRVKF-AGEERTVSAQNFIIAVGGRPTYP  266 (296)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~---~~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p  266 (296)
                               .+.   ..+...+...+++.||+++.+.. ...   ++..+.+ .+......+|.|++|+|.+|+..
T Consensus       290 ---------~~d---~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~  353 (558)
T PLN02546        290 ---------GFD---EEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTK  353 (558)
T ss_pred             ---------ccC---HHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCC
Confidence                     000   11223345566778999987643 222   1233444 22113345899999999988764

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.03  E-value=3e-09  Score=101.94  Aligned_cols=33  Identities=30%  Similarity=0.449  Sum_probs=31.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ..+||||||||.|||.||+.+++.|.+|+|+||
T Consensus        11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK   43 (598)
T PRK09078         11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITK   43 (598)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEEc
Confidence            568999999999999999999999999999994

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.03  E-value=1.6e-09  Score=98.80  Aligned_cols=31  Identities=39%  Similarity=0.651  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      |||+||||||||+++|+.|++.|++|+|+|+
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~   31 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLER   31 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEC
Confidence            6999999999999999999999999999993

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=99.03  E-value=4.8e-10  Score=102.86  Aligned_cols=60  Identities=27%  Similarity=0.350  Sum_probs=57.0

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLS   61 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~   61 (296)
                      .+|+++|++|++|||+|++|++|+|+|++++++|+++.+.+++.+++++|||++|.+...
T Consensus       394 ~~Klv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT~sE~~~~a  453 (454)
T COG1249         394 FVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTLSEALKEA  453 (454)
T ss_pred             EEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCCCCCCChHHHHHHh
Confidence            479999999999999999999999999999999999999999999999999999998653

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=99.03  E-value=4.2e-09  Score=101.11  Aligned_cols=148  Identities=18%  Similarity=0.226  Sum_probs=83.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccC----CCch-----------------hH
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVG----CIPK-----------------KL  172 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~----~~p~-----------------~~  172 (296)
                      ..+||+|||||.||+.||+.+++.|.+|+|+||.....-++....||.+...+    ..+.                 .+
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~lv  107 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDAI  107 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence            56899999999999999999999999999999432222222222244432211    1111                 11


Q ss_pred             HHHhhhhHHHhhcccccCccccccCCH---------HHH-------HHH----HHHHHHHHHHHHHHHHHHCCcEEEcce
Q psy7665         173 FHRASLLNEEATTSDNFGFHMKKSFTW---------KTL-------VDN----VQKYIRNLNNNYEKELEKNKIDYFNAK  232 (296)
Q Consensus       173 ~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~-------~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~  232 (296)
                      ........+.+.++..+|+++....+.         ...       ..+    ....-..+...+...+.+.+++++.+.
T Consensus       108 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~  187 (617)
T PTZ00139        108 QYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNFFIEY  187 (617)
T ss_pred             HHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCEEEece
Confidence            112223445566777788776431110         000       000    000112344455566667799998764


Q ss_pred             E--EEE--eCCEE---EE----cceeEEEEeCeEEEcCCC
Q psy7665         233 A--VFV--DKHRV---KF----AGEERTVSAQNFIIAVGG  261 (296)
Q Consensus       233 ~--~~~--~~~~v---~v----~g~~~~~~a~~vV~AtG~  261 (296)
                      .  ..+  ++..|   .+    +++...+.|+.||+|||.
T Consensus       188 ~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG  227 (617)
T PTZ00139        188 FALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGG  227 (617)
T ss_pred             EEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCC
Confidence            3  222  22322   22    344567899999999996

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=99.02  E-value=2.3e-09  Score=99.18  Aligned_cols=34  Identities=29%  Similarity=0.384  Sum_probs=31.8

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ...|||+||||||+|+++|..|+++|++|+|+|+
T Consensus        37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr   70 (450)
T PLN00093         37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIER   70 (450)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence            3568999999999999999999999999999993

>PRK13984 putative oxidoreductase; Provisional

Probab=99.01  E-value=1.2e-09  Score=105.00  Aligned_cols=130  Identities=18%  Similarity=0.216  Sum_probs=81.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ...+|+|||+|++|+++|..|+++|++|+|+|  +.+      ..||...+.  +|.                  +    
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie--~~~------~~gG~~~~~--i~~------------------~----  329 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYE--SLS------KPGGVMRYG--IPS------------------Y----  329 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEe--cCC------CCCceEeec--CCc------------------c----
Confidence            45789999999999999999999999999999  665      566643211  110                  0    


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCC-CCCCCCCCCc
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYPDIPGAR  272 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~-p~~p~i~G~~  272 (296)
                        .+. ..+           .......+++.|++++.+.....   .+..+.  ....+|+||+|||+. |+.+++||.+
T Consensus       330 --~~~-~~~-----------~~~~~~~~~~~gv~~~~~~~v~~---~~~~~~--~~~~yD~vilAtGa~~~r~l~i~G~~  390 (604)
T PRK13984        330 --RLP-DEA-----------LDKDIAFIEALGVKIHLNTRVGK---DIPLEE--LREKHDAVFLSTGFTLGRSTRIPGTD  390 (604)
T ss_pred             --cCC-HHH-----------HHHHHHHHHHCCcEEECCCEeCC---cCCHHH--HHhcCCEEEEEcCcCCCccCCCCCcC
Confidence              000 011           11122455677898877543211   111122  235799999999985 6788899976


Q ss_pred             -cceeecc--cC------------CCCCCcEEEeecc
Q psy7665         273 -LLRTLSL--LS------------GVDPPTLIFLEHI  294 (296)
Q Consensus       273 -~~~~~s~--~~------------~~~~~~~~~~~~~  294 (296)
                       ..+.+..  +.            ...+++++||+++
T Consensus       391 ~~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG  427 (604)
T PRK13984        391 HPDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGG  427 (604)
T ss_pred             CcCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCc
Confidence             3344331  10            1235788888765

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=99.01  E-value=6.4e-10  Score=102.47  Aligned_cols=138  Identities=22%  Similarity=0.272  Sum_probs=34.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcc-ccc
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFH-MKK  195 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~-~~~  195 (296)
                      ||||||||++|++||+.+++.|.+|+|+|  +.+.+|.....|+.+...+..... ........+........+-. ...
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE--~~~~lGG~~t~~~~~~~~~~~~~~-~~~~gi~~e~~~~~~~~~~~~~~~   77 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIE--KGGFLGGMATSGGVSPFDGNHDED-QVIGGIFREFLNRLRARGGYPQED   77 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE---SSSSSTGGGGGSSS-EETTEEHHH-HHHHHHHHHHHHST----------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEE--CCccCCCcceECCcCChhhcchhh-ccCCCHHHHHHHHHhhhccccccc
Confidence            89999999999999999999999999999  777344333333322111111000 11111112222222221100 000


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEE---EeC---CEEEE--cceeEEEEeCeEEEcCC
Q psy7665         196 SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVF---VDK---HRVKF--AGEERTVSAQNFIIAVG  260 (296)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~---~~v~v--~g~~~~~~a~~vV~AtG  260 (296)
                      ...|..   ...-..+.+...+.+.+.+.|++++.++...   .++   ..|.+  .++..++.|+.+|.|||
T Consensus        78 ~~~~~~---~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG  147 (428)
T PF12831_consen   78 RYGWVS---NVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATG  147 (428)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             cccccc---cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            000000   0011112223334555566788887664321   222   23444  22357899999999999

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=99.01  E-value=1.7e-09  Score=100.13  Aligned_cols=136  Identities=13%  Similarity=0.229  Sum_probs=75.1

Q ss_pred             cEEEECCChHHHHHHHHHHhC--CCcEEEEeccCCCCCCcccccCCeeeccCC-CchhHHHHhhhhHHHhhcccccCccc
Q psy7665         117 DLCVIGGGSGGISAAKEAASM--NKKVALFDFVTPSQHGTVWGLGGTCVNVGC-IPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      +|||||||++|+.+|..|++.  +.+|+|+|  +.+      ..+    +..| +|...                .+.  
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~--~~~------~~~----~~~~~lp~~~----------------~~~--   52 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFE--KDR------DMS----FANCALPYYI----------------GEV--   52 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEE--CCC------Ccc----cccCCcchhh----------------cCc--
Confidence            799999999999999999987  57899999  443      111    0000 01000                000  


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEc-ceEEEE--eCCEEEE-c---ceeEEEEeCeEEEcCCCCCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFN-AKAVFV--DKHRVKF-A---GEERTVSAQNFIIAVGGRPTYP  266 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~--~~~~v~v-~---g~~~~~~a~~vV~AtG~~p~~p  266 (296)
                        ........        .+.  .....++.+++++. .++..+  +...|.+ +   ++..++.||+||+|||++|+.|
T Consensus        53 --~~~~~~~~--------~~~--~~~~~~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~  120 (438)
T PRK13512         53 --VEDRKYAL--------AYT--PEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSL  120 (438)
T ss_pred             --cCCHHHcc--------cCC--HHHHHHhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCC
Confidence              00000000        000  01122445888864 444333  3456666 2   2233578999999999999888


Q ss_pred             CCCCCccceeecc---------cCCCCCCcEEEeecc
Q psy7665         267 DIPGARLLRTLSL---------LSGVDPPTLIFLEHI  294 (296)
Q Consensus       267 ~i~G~~~~~~~s~---------~~~~~~~~~~~~~~~  294 (296)
                      ++++...+...+.         .....+++++|++++
T Consensus       121 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG  157 (438)
T PRK13512        121 GFESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAG  157 (438)
T ss_pred             CCCCCCeEEecCHHHHHHHHHHHhhcCCCEEEEECCC
Confidence            7765322222111         112346788888754

>PRK08401 L-aspartate oxidase; Provisional

Probab=99.00  E-value=2.9e-09  Score=99.18  Aligned_cols=144  Identities=14%  Similarity=0.199  Sum_probs=77.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcc-cccCCeeecc--CCCc-----------------hhHHHH
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTV-WGLGGTCVNV--GCIP-----------------KKLFHR  175 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~-~~~GG~~~~~--~~~p-----------------~~~~~~  175 (296)
                      +||+|||||.||+.||..+++.|.+|+|+|+  ....+.+ +.-||.+...  ..-|                 ......
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek--~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~   79 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGP--GIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNV   79 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeC--CCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            5999999999999999999999999999994  3322211 1123332110  0011                 111111


Q ss_pred             hhhhHHHhhcccccCcccccc-----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEE-E-eCCEE---EEcc
Q psy7665         176 ASLLNEEATTSDNFGFHMKKS-----FTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVF-V-DKHRV---KFAG  245 (296)
Q Consensus       176 ~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~-~~~~v---~v~g  245 (296)
                      .....+.+.++..+|+++...     ..++............+...+...+++.+++++...... . +...+   .+++
T Consensus        80 ~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~v~~l~~~~g~v~Gv~~~g  159 (466)
T PRK08401         80 ISKSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRGFAEELAIKNGKAYGVFLDG  159 (466)
T ss_pred             HHHHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEeEeEEEEeeCCEEEEEEECC
Confidence            122233445666667665320     011100000011122344445566677799987654422 1 22333   2255


Q ss_pred             eeEEEEeCeEEEcCCCCC
Q psy7665         246 EERTVSAQNFIIAVGGRP  263 (296)
Q Consensus       246 ~~~~~~a~~vV~AtG~~p  263 (296)
                        ..+.++.||+|||+.+
T Consensus       160 --~~i~a~~VVLATGG~~  175 (466)
T PRK08401        160 --ELLKFDATVIATGGFS  175 (466)
T ss_pred             --EEEEeCeEEECCCcCc
Confidence              4689999999999744

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.00  E-value=4.6e-09  Score=100.36  Aligned_cols=148  Identities=22%  Similarity=0.246  Sum_probs=81.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccC----CCc-----------------hhH
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVG----CIP-----------------KKL  172 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~----~~p-----------------~~~  172 (296)
                      ..+||+|||+|.|||.||+.+++.|.+|+|+||.....-++.+..||.+...+    ..+                 ..+
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v   85 (588)
T PRK08958          6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAI   85 (588)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCccHHhhhhHhhhcCCCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence            45799999999999999999999999999999432221122222244332111    111                 112


Q ss_pred             HHHhhhhHHHhhcccccCccccccCCHHHHH----HH---------------HHHHHHHHHHHHHHHHHHCCcEEEcceE
Q psy7665         173 FHRASLLNEEATTSDNFGFHMKKSFTWKTLV----DN---------------VQKYIRNLNNNYEKELEKNKIDYFNAKA  233 (296)
Q Consensus       173 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~---------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~  233 (296)
                      ........+.+.++..+|++++...+.....    .+               ....-..+...+...+.+.+++++..+.
T Consensus        86 ~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~~~G~~i~~~L~~~~~~~gi~i~~~~~  165 (588)
T PRK08958         86 EYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWY  165 (588)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccccceeEecCCCCHHHHHHHHHHHhhhcCCEEEeCcE
Confidence            2223344556677777888775311100000    00               0001122333445555567898876543


Q ss_pred             --EEE-e-CCEE---EE----cceeEEEEeCeEEEcCCC
Q psy7665         234 --VFV-D-KHRV---KF----AGEERTVSAQNFIIAVGG  261 (296)
Q Consensus       234 --~~~-~-~~~v---~v----~g~~~~~~a~~vV~AtG~  261 (296)
                        ... + +..|   ..    ++....+.|+.||+|||.
T Consensus       166 ~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG  204 (588)
T PRK08958        166 ALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGG  204 (588)
T ss_pred             EEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence              122 2 2332   21    344457889999999996

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.99  E-value=1.9e-09  Score=100.40  Aligned_cols=108  Identities=19%  Similarity=0.300  Sum_probs=70.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      .+.+|+||||||+|+++|..|+++|++|+|+|  +.+      .+||...+  .+|..                      
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e--~~~------~~gG~l~~--gip~~----------------------  187 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFD--RHP------EIGGLLTF--GIPSF----------------------  187 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEe--cCC------CCCceeee--cCccc----------------------
Confidence            45799999999999999999999999999999  666      67774322  12210                      


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCCCC-CCCCCCCc
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPT-YPDIPGAR  272 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~p~-~p~i~G~~  272 (296)
                        ..+            ..+.......+++.|++++.+...  . ..+.+++  ....+|+||+|||+.+. .++|||.+
T Consensus       188 --~~~------------~~~~~~~~~~~~~~Gv~~~~~~~v--~-~~~~~~~--~~~~~D~vilAtGa~~~~~~~i~g~~  248 (467)
T TIGR01318       188 --KLD------------KAVLSRRREIFTAMGIEFHLNCEV--G-RDISLDD--LLEDYDAVFLGVGTYRSMRGGLPGED  248 (467)
T ss_pred             --cCC------------HHHHHHHHHHHHHCCCEEECCCEe--C-CccCHHH--HHhcCCEEEEEeCCCCCCcCCCCCcC
Confidence              001            011112234566779998765422  1 1122222  12469999999999764 46788876

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.98  E-value=2.4e-09  Score=96.23  Aligned_cols=115  Identities=23%  Similarity=0.364  Sum_probs=74.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC--CcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMN--KKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      .+|||||||.+|+.+|..|.+.-  .++++||  +.+              ..+++. .+++          ....    
T Consensus         4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd--~~~--------------~hl~~p-lL~e----------va~g----   52 (405)
T COG1252           4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVD--RRD--------------YHLFTP-LLYE----------VATG----   52 (405)
T ss_pred             ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEe--CCC--------------ccccch-hhhh----------hhcC----
Confidence            47999999999999999999975  8899999  443              000000 0000          0000    


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CcEEEcceEEEEe--CCEEEEcceeEEEEeCeEEEcCCCCCCCCCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKN-KIDYFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG  270 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~--~~~v~v~g~~~~~~a~~vV~AtG~~p~~p~i~G  270 (296)
                        .++.           ......+...+... +++++.+++..++  .++|++.+ ...+.||++|+|+|+.+..+.+||
T Consensus        53 --~l~~-----------~~i~~p~~~~~~~~~~v~~~~~~V~~ID~~~k~V~~~~-~~~i~YD~LVvalGs~~~~fgi~G  118 (405)
T COG1252          53 --TLSE-----------SEIAIPLRALLRKSGNVQFVQGEVTDIDRDAKKVTLAD-LGEISYDYLVVALGSETNYFGIPG  118 (405)
T ss_pred             --CCCh-----------hheeccHHHHhcccCceEEEEEEEEEEcccCCEEEeCC-CccccccEEEEecCCcCCcCCCCC
Confidence              1111           11222344455534 4899888776543  55677733 267999999999999999999999


Q ss_pred             Cccce
Q psy7665         271 ARLLR  275 (296)
Q Consensus       271 ~~~~~  275 (296)
                      ..++.
T Consensus       119 ~~E~a  123 (405)
T COG1252         119 AAEYA  123 (405)
T ss_pred             HHHhC
Confidence            76543

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.98  E-value=1.2e-08  Score=98.28  Aligned_cols=32  Identities=31%  Similarity=0.506  Sum_probs=30.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..+||+|||+|.|||+||+.+++.|.+|+|+|
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~Vilie   65 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFC   65 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEe
Confidence            46799999999999999999999999999999

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.98  E-value=3.1e-09  Score=97.70  Aligned_cols=32  Identities=47%  Similarity=0.670  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      ||||||+|.+|+.||++++++|.+|+|+|  +.+
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lve--k~~   32 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVE--KGP   32 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEE--SSS
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEE--eec
Confidence            89999999999999999999999999999  555

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.97  E-value=7.1e-09  Score=98.77  Aligned_cols=33  Identities=45%  Similarity=0.645  Sum_probs=31.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ..+||+|||+|.||+.||+.+++.|.+|+|+||
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK   36 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISK   36 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEc
Confidence            457999999999999999999999999999994

>TIGR00275 flavoprotein, HI0933 family

Probab=98.97  E-value=2.2e-09  Score=98.09  Aligned_cols=139  Identities=19%  Similarity=0.268  Sum_probs=76.0

Q ss_pred             EEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCccccc--CCeeeccCC--CchhHHHHh------------hhhHHH
Q psy7665         119 CVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGL--GGTCVNVGC--IPKKLFHRA------------SLLNEE  182 (296)
Q Consensus       119 vVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~--GG~~~~~~~--~p~~~~~~~------------~~~~~~  182 (296)
                      +|||||++|++||+.|++.|++|+|+|  +.+..|.|+..  +|.|.....  .+.......            ....+.
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llE--k~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~   78 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLE--KNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDL   78 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEe--cCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHH
Confidence            699999999999999999999999999  77777887655  346632211  111000000            001112


Q ss_pred             hhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceE-EE--EeCCEEEE--cceeEEEEeCeEEE
Q psy7665         183 ATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA-VF--VDKHRVKF--AGEERTVSAQNFII  257 (296)
Q Consensus       183 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~--~~~~~v~v--~g~~~~~~a~~vV~  257 (296)
                      ..++...|.+.....+. .+.. .......+...+...+++.+++++.+.. ..  .+...+.+  ++  ..+.+|.||+
T Consensus        79 ~~~~~~~Gv~~~~~~~g-~~~p-~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~~~--~~i~ad~VIl  154 (400)
T TIGR00275        79 IDFFESLGLELKVEEDG-RVFP-CSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVETSG--GEYEADKVIL  154 (400)
T ss_pred             HHHHHHcCCeeEEecCC-EeEC-CCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEECC--cEEEcCEEEE
Confidence            22333334322110000 0000 0011233444556667778999876543 22  12223333  44  4689999999


Q ss_pred             cCCCCC
Q psy7665         258 AVGGRP  263 (296)
Q Consensus       258 AtG~~p  263 (296)
                      |+|..+
T Consensus       155 AtG~~s  160 (400)
T TIGR00275       155 ATGGLS  160 (400)
T ss_pred             CCCCcc
Confidence            999754

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.97  E-value=9.5e-10  Score=98.29  Aligned_cols=32  Identities=28%  Similarity=0.604  Sum_probs=28.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      .+||+||||||+|+++|..|+++|++|+|||+
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~   32 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARAGIDVTIIER   32 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CceEEEECCCHHHHHHHHHHHhcccccccchh
Confidence            37999999999999999999999999999993

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.96  E-value=7.2e-09  Score=96.70  Aligned_cols=33  Identities=33%  Similarity=0.442  Sum_probs=30.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ..+||||||+|++|++||++++++|.+|+|+|+
T Consensus         3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk   35 (466)
T PRK08274          3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEA   35 (466)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence            357999999999999999999999999999994

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.96  E-value=1.5e-08  Score=96.32  Aligned_cols=50  Identities=30%  Similarity=0.512  Sum_probs=42.1

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccC---CCchh
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVG---CIPKK  171 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~---~~p~~  171 (296)
                      +..+||||||+| +|++||..+++.|.+|+|+|  +.+      .+||++...+   |+|..
T Consensus        14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~E--k~~------~~GG~~~~~gG~~~~~~~   66 (564)
T PRK12845         14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVE--KSS------YVGGSTARSGGAFWLPAS   66 (564)
T ss_pred             CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEe--cCC------CCcCcccCcCCCEecCCh
Confidence            457899999999 89999999999999999999  666      6788877665   55543

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.95  E-value=7.8e-10  Score=100.62  Aligned_cols=31  Identities=48%  Similarity=0.784  Sum_probs=29.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .|||+|||||+|||+||..+++.|.+++++.
T Consensus         4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT   34 (621)
T COG0445           4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLT   34 (621)
T ss_pred             CCceEEECCCccchHHHHhhhccCCeEEEEE
Confidence            4899999999999999999999999999998

>PLN02697 lycopene epsilon cyclase

Probab=98.95  E-value=6.7e-09  Score=97.42  Aligned_cols=33  Identities=36%  Similarity=0.542  Sum_probs=31.2

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..+||+||||||+|+++|..|++.|++|+++|
T Consensus       106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe  138 (529)
T PLN02697        106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIG  138 (529)
T ss_pred             cCcccEEEECcCHHHHHHHHHHHhCCCcEEEec
Confidence            356899999999999999999999999999999

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.95  E-value=3e-09  Score=103.09  Aligned_cols=108  Identities=18%  Similarity=0.247  Sum_probs=69.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      .+.+|+||||||+|+++|.+|++.|++|+|+|  +.+      .+||...+  .+|..                      
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E--~~~------~~GG~l~~--gip~~----------------------  373 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYD--RHP------EIGGLLTF--GIPAF----------------------  373 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEe--cCC------CCCceeee--cCCCc----------------------
Confidence            45799999999999999999999999999999  666      67775432  12210                      


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCC-CCCCCCCCCc
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYPDIPGAR  272 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~-p~~p~i~G~~  272 (296)
                        .+..            .+.......+++.|+++..+....   ..+.+..  ....+|+|++|||+. +..+.+||.+
T Consensus       374 --~l~~------------~~~~~~~~~~~~~Gv~~~~~~~v~---~~i~~~~--~~~~~DavilAtGa~~~~~l~i~g~~  434 (654)
T PRK12769        374 --KLDK------------SLLARRREIFSAMGIEFELNCEVG---KDISLES--LLEDYDAVFVGVGTYRSMKAGLPNED  434 (654)
T ss_pred             --cCCH------------HHHHHHHHHHHHCCeEEECCCEeC---CcCCHHH--HHhcCCEEEEeCCCCCCCCCCCCCCC
Confidence              1110            011112344566789887654211   1122211  123689999999985 4456788865

>PRK06834 hypothetical protein; Provisional

Probab=98.94  E-value=9.1e-09  Score=96.35  Aligned_cols=32  Identities=28%  Similarity=0.427  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      .+||+||||||+|+++|..|++.|.+|+|+|+
T Consensus         3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr   34 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVER   34 (488)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence            47999999999999999999999999999993

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.93  E-value=1.2e-08  Score=97.68  Aligned_cols=33  Identities=33%  Similarity=0.530  Sum_probs=30.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC---CcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMN---KKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G---~~V~iiE~  146 (296)
                      ..+||+|||||.|||.||+.+++.|   .+|+|+||
T Consensus         4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK   39 (577)
T PRK06069          4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSK   39 (577)
T ss_pred             eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEc
Confidence            4679999999999999999999998   89999994

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.92  E-value=1.6e-08  Score=96.68  Aligned_cols=30  Identities=33%  Similarity=0.516  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ||+|||||.||++||+.+++.|.+|+|+||
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK   30 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISK   30 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEec
Confidence            799999999999999999999999999994

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.92  E-value=1.3e-08  Score=97.93  Aligned_cols=33  Identities=39%  Similarity=0.532  Sum_probs=31.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ..+||+|||+|.||+.||+.+++.|.+|+|+||
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK   39 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCK   39 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHHCCCCEEEEec
Confidence            567999999999999999999999999999994

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.92  E-value=5.9e-08  Score=86.74  Aligned_cols=30  Identities=37%  Similarity=0.578  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ||+|||||.+|+++|++|++.|++|+|+|+
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~   30 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGHSVTLLER   30 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTSEEEEEES
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEee
Confidence            799999999999999999999999999993

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK06370 mercuric reductase; Validated

Probab=98.91  E-value=3.5e-09  Score=98.70  Aligned_cols=63  Identities=19%  Similarity=0.181  Sum_probs=59.4

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHHh
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWIK   64 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~~   64 (296)
                      .+|+++|++|++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.+...+..
T Consensus       393 ~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~~  455 (463)
T PRK06370        393 FMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSELIPTLAQA  455 (463)
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCChHHHHHHHHHh
Confidence            478999999999999999999999999999999999999999999999999999998877653

>PRK14694 putative mercuric reductase; Provisional

Probab=98.91  E-value=3.6e-09  Score=98.76  Aligned_cols=62  Identities=11%  Similarity=0.097  Sum_probs=58.4

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI   63 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~   63 (296)
                      .+|+|+|++|++|||+|++|++|+|+|+.++++|+++.+.++|.+++++|||++|.+.....
T Consensus       393 ~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~  454 (468)
T PRK14694        393 FIKMVAERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADELFPYLTMVEGLKLCAQ  454 (468)
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCchHHHHHHHHH
Confidence            37899999999999999999999999999999999999999999999999999998876554

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.90  E-value=1.2e-08  Score=96.06  Aligned_cols=38  Identities=29%  Similarity=0.538  Sum_probs=33.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHG  153 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g  153 (296)
                      .++||||||+|.+|++||+++++.|.+|+|+|  +....|
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlE--K~~~~G   97 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILE--KMPVAG   97 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEE--CCCCCC
Confidence            46799999999999999999999999999999  555333

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.90  E-value=3.8e-09  Score=98.42  Aligned_cols=62  Identities=19%  Similarity=-0.012  Sum_probs=58.5

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI   63 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~   63 (296)
                      .+|+++|++|++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.+...+.
T Consensus       393 ~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~  454 (461)
T PRK05249        393 MLKILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTTFNYPTMAEAYRVAAL  454 (461)
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999998877654

>PLN02507 glutathione reductase

Probab=98.90  E-value=4.2e-09  Score=98.89  Aligned_cols=67  Identities=28%  Similarity=0.415  Sum_probs=60.6

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHHhhcCC
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWIKGYNI   68 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~~~~~~   68 (296)
                      .+|+|+|++|++|||+|++|++++|+|+.++++|+++++.++|.+++++|||++|.+.....++...
T Consensus       423 ~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~~~~~~~~  489 (499)
T PLN02507        423 VMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTVGIHPSAAEEFVTMRSVTRRV  489 (499)
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcCcCCCChHHHHHHHHhhhccc
Confidence            4789999999999999999999999999999999999999999999999999999997665454433

>PRK06847 hypothetical protein; Provisional

Probab=98.90  E-value=1.3e-08  Score=92.21  Aligned_cols=32  Identities=31%  Similarity=0.490  Sum_probs=30.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ..||+|||||++|+++|..|++.|.+|+|+|+
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~   35 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEI   35 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence            35899999999999999999999999999993

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.89  E-value=2.2e-08  Score=95.02  Aligned_cols=33  Identities=27%  Similarity=0.424  Sum_probs=31.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ..+||+|||+|.||+.||+.+++.|.+|+|+||
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK   47 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTK   47 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCeEEEEEc
Confidence            567999999999999999999999999999993

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.89  E-value=5.7e-09  Score=100.83  Aligned_cols=108  Identities=20%  Similarity=0.290  Sum_probs=69.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      .+.+|+||||||+|+++|..|+++|++|+|+|  +.+      .+||.+.+                         +++.
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e--~~~------~~GG~l~~-------------------------gip~  355 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFD--RHP------EIGGMLTF-------------------------GIPP  355 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEe--CCC------CCCCeeec-------------------------cCCc
Confidence            46799999999999999999999999999999  666      67775422                         1111


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCC-CCCCCCCCCc
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYPDIPGAR  272 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~-p~~p~i~G~~  272 (296)
                      . .++.. .           .......++..|++++.+...   ...+.+.+  ....+|+|++|||+. +..+++||.+
T Consensus       356 ~-~l~~~-~-----------~~~~~~~~~~~Gv~~~~~~~v---~~~~~~~~--l~~~~DaV~latGa~~~~~~~i~g~~  417 (639)
T PRK12809        356 F-KLDKT-V-----------LSQRREIFTAMGIDFHLNCEI---GRDITFSD--LTSEYDAVFIGVGTYGMMRADLPHED  417 (639)
T ss_pred             c-cCCHH-H-----------HHHHHHHHHHCCeEEEcCCcc---CCcCCHHH--HHhcCCEEEEeCCCCCCCCCCCCCCc
Confidence            0 11111 0           111234456779998765421   11122222  224689999999985 4457788876

>PRK14727 putative mercuric reductase; Provisional

Probab=98.89  E-value=4.3e-09  Score=98.50  Aligned_cols=62  Identities=18%  Similarity=0.155  Sum_probs=58.6

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI   63 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~   63 (296)
                      .+|+|+|++|++|||+|++|++|+|+|+.++++|+++.+.++|.+++++|||++|.+...+.
T Consensus       404 ~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~~~  465 (479)
T PRK14727        404 FIKLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQLFPYLTMVEGLKLCAQ  465 (479)
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCCccCCChHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999998877664

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.89  E-value=9.7e-09  Score=94.77  Aligned_cols=32  Identities=19%  Similarity=0.326  Sum_probs=28.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      .++||||||+|.||+.||+.++ .|.+|+|+||
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK   34 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSK   34 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc-cCCCEEEEec
Confidence            3579999999999999999985 7999999994

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.89  E-value=3.4e-09  Score=98.40  Aligned_cols=58  Identities=26%  Similarity=0.472  Sum_probs=55.5

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAIS   59 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~   59 (296)
                      .+|+++|++|++|||+|++|++|+|+|+.++++|+++.+.++|.+++++|||++|.+.
T Consensus       390 ~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~  447 (450)
T TIGR01421       390 RMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSEELV  447 (450)
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHh
Confidence            4789999999999999999999999999999999999999999999999999999764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.89  E-value=5.1e-09  Score=97.70  Aligned_cols=63  Identities=11%  Similarity=0.198  Sum_probs=59.3

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHHh
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWIK   64 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~~   64 (296)
                      .+|+++|++|++|||+|++|++|+|+|+.++++|+++++.++|.+.+++|||++|.++..++.
T Consensus       396 ~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~  458 (466)
T PRK07818        396 FVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNVHTHPTLSEALKEAFHG  458 (466)
T ss_pred             EEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCccCCCchHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999999999999877653

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.89  E-value=8e-09  Score=93.60  Aligned_cols=143  Identities=16%  Similarity=0.117  Sum_probs=72.9

Q ss_pred             cEEEECCChHHHHHHHHH--HhCCCcEEEEeccCCCCCCcccccCC--eeeccCCCchhHHHHhhhhHHHh-hcccccCc
Q psy7665         117 DLCVIGGGSGGISAAKEA--ASMNKKVALFDFVTPSQHGTVWGLGG--TCVNVGCIPKKLFHRASLLNEEA-TTSDNFGF  191 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l--~~~G~~V~iiE~~~~~~~g~~~~~GG--~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~g~  191 (296)
                      ||+||||||||+++|.+|  ++.|.+|+|+|  +..+.+    ...  +|..+.--...       ..+.+ ..+..+.+
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid--~~~~~~----~~~~~tW~~~~~~~~~-------~~~~v~~~w~~~~v   67 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLID--PKPKPP----WPNDRTWCFWEKDLGP-------LDSLVSHRWSGWRV   67 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEc--CCcccc----ccCCcccccccccccc-------hHHHHheecCceEE
Confidence            899999999999999999  78899999999  444221    022  22111110000       00000 11111111


Q ss_pred             cccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEe--CC--EEEE-cceeEEEEeCeEEEcCCCCCCC
Q psy7665         192 HMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVD--KH--RVKF-AGEERTVSAQNFIIAVGGRPTY  265 (296)
Q Consensus       192 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~--~v~v-~g~~~~~~a~~vV~AtG~~p~~  265 (296)
                      .++. ...... ..|..-....+...+...+...++..+...+..+.  ..  .+++ +|  .++.|+.||.|+|..+..
T Consensus        68 ~~~~~~~~~~~-~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g--~~i~a~~VvDa~g~~~~~  144 (374)
T PF05834_consen   68 YFPDGSRILID-YPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADG--RTIRARVVVDARGPSSPK  144 (374)
T ss_pred             EeCCCceEEcc-cceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCC--CEEEeeEEEECCCccccc
Confidence            1111 000000 11111122344455556666556666666554332  22  2333 55  589999999999965543


Q ss_pred             CCCCCCccce
Q psy7665         266 PDIPGARLLR  275 (296)
Q Consensus       266 p~i~G~~~~~  275 (296)
                      ..-.+.+.|.
T Consensus       145 ~~~~~~Q~f~  154 (374)
T PF05834_consen  145 ARPLGLQHFY  154 (374)
T ss_pred             ccccccceeE
Confidence            3334444443

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.88  E-value=2.7e-08  Score=95.21  Aligned_cols=34  Identities=24%  Similarity=0.474  Sum_probs=31.6

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      +..+||+|||+|.||+.||+.+++.|.+|+|+|+
T Consensus        10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK   43 (591)
T PRK07057         10 RRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSK   43 (591)
T ss_pred             cccCCEEEECccHHHHHHHHHHHHCCCcEEEEec
Confidence            3568999999999999999999999999999994

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.88  E-value=1.2e-08  Score=92.98  Aligned_cols=33  Identities=30%  Similarity=0.362  Sum_probs=30.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ..+||+||||||+|+++|+.|+++|.+|+|+|+
T Consensus         5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~   37 (392)
T PRK08773          5 SRRDAVIVGGGVVGAACALALADAGLSVALVEG   37 (392)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeC
Confidence            457999999999999999999999999999993

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.88  E-value=4.9e-09  Score=97.04  Aligned_cols=60  Identities=18%  Similarity=0.146  Sum_probs=56.7

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLS   61 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~   61 (296)
                      .+|+++|++|++|||+|++|++|+|+|+.++++|+++++.++|.+.+++|||++|.+...
T Consensus       376 ~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~  435 (438)
T PRK07251        376 AFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMAENLNDL  435 (438)
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHHHH
Confidence            478999999999999999999999999999999999999999999999999999987654

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.87  E-value=8.1e-09  Score=93.72  Aligned_cols=134  Identities=14%  Similarity=0.128  Sum_probs=82.4

Q ss_pred             ccceeeeeeeccccCCccchhhhccCcceeecc-----ccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCC
Q psy7665          75 LHTPYLVLAKARFLLPTLECQEVYHDGRFYDYL-----DNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTP  149 (296)
Q Consensus        75 ~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~  149 (296)
                      .+.+|.+++|+|+.+..++.++.+....+....     ... .....+|+|||||+.|+++|..|++.|.+|++++  +.
T Consensus        97 ~~~yd~LVlATG~~~~~p~i~G~~~v~~~~~~~~~~~~~~~-~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~--~~  173 (377)
T PRK04965         97 QWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEYRAAETQ-LRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVD--NA  173 (377)
T ss_pred             EEeCCEEEECCCCCCCCCCCCCCceEEEECCHHHHHHHHHH-hhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEe--cC
Confidence            467899999999877655544432211111110     000 0123589999999999999999999999999999  43


Q ss_pred             CCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEE
Q psy7665         150 SQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYF  229 (296)
Q Consensus       150 ~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  229 (296)
                      +      .+...                                  ..+            ......+...+++.|++++
T Consensus       174 ~------~~l~~----------------------------------~~~------------~~~~~~l~~~l~~~gV~i~  201 (377)
T PRK04965        174 A------SLLAS----------------------------------LMP------------PEVSSRLQHRLTEMGVHLL  201 (377)
T ss_pred             C------cccch----------------------------------hCC------------HHHHHHHHHHHHhCCCEEE
Confidence            3      10000                                  000            1112234455677799987


Q ss_pred             cceE-EEEe--CCE--EEE-cceeEEEEeCeEEEcCCCCCCC
Q psy7665         230 NAKA-VFVD--KHR--VKF-AGEERTVSAQNFIIAVGGRPTY  265 (296)
Q Consensus       230 ~~~~-~~~~--~~~--v~v-~g~~~~~~a~~vV~AtG~~p~~  265 (296)
                      .+.. ....  ...  +.. ++  .++.||.||+|+|.+|+.
T Consensus       202 ~~~~v~~i~~~~~~~~v~~~~g--~~i~~D~vI~a~G~~p~~  241 (377)
T PRK04965        202 LKSQLQGLEKTDSGIRATLDSG--RSIEVDAVIAAAGLRPNT  241 (377)
T ss_pred             ECCeEEEEEccCCEEEEEEcCC--cEEECCEEEECcCCCcch
Confidence            6532 2221  222  333 45  579999999999998764

>PRK07121 hypothetical protein; Validated

Probab=98.87  E-value=5.1e-08  Score=91.61  Aligned_cols=35  Identities=31%  Similarity=0.480  Sum_probs=32.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      .++||||||+|.+|+.||+++++.|.+|+|+|  +..
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillE--K~~   53 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLE--RAA   53 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEe--CCC
Confidence            46799999999999999999999999999999  555

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.87  E-value=2.1e-08  Score=95.78  Aligned_cols=33  Identities=42%  Similarity=0.642  Sum_probs=30.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC--CCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASM--NKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~  146 (296)
                      ..+||+|||||.||+.||+.+++.  |.+|+|+||
T Consensus         3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK   37 (582)
T PRK09231          3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISK   37 (582)
T ss_pred             eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEc
Confidence            567999999999999999999987  479999994

>PRK08244 hypothetical protein; Provisional

Probab=98.87  E-value=1.6e-08  Score=95.06  Aligned_cols=32  Identities=31%  Similarity=0.539  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      .+||+||||||+|+++|..|++.|.+|+|+|+
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr   33 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIER   33 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence            47999999999999999999999999999993

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.87  E-value=5.6e-09  Score=97.36  Aligned_cols=62  Identities=15%  Similarity=0.215  Sum_probs=58.7

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI   63 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~   63 (296)
                      .+|+++|++|++|||+|++|++|+|+|+.++++|+.+++.++|.+++++|||++|.+...+.
T Consensus       396 ~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~~~~hPt~~e~~~~a~~  457 (466)
T PRK06115        396 FAKILADARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRSEALRQAAM  457 (466)
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCccCCCChHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999877764

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.87  E-value=5.8e-09  Score=97.28  Aligned_cols=62  Identities=15%  Similarity=0.100  Sum_probs=58.4

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI   63 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~   63 (296)
                      .+|+|+|++|++|||+|++|++|+|+|+.++++|+++.+.++|.+.+++|||++|.+...++
T Consensus       396 ~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~  457 (466)
T PRK07845        396 FVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVYPSLSGSITEAAR  457 (466)
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCcCCCCCHHHHHHHHHH
Confidence            37899999999999999999999999999999999999999999999999999998876655

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.87  E-value=4.3e-09  Score=98.32  Aligned_cols=60  Identities=25%  Similarity=0.321  Sum_probs=57.1

Q ss_pred             cceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHH
Q psy7665           3 LPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSW   62 (296)
Q Consensus         3 ~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~   62 (296)
                      +|+|+|++|++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.+....
T Consensus       412 ~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai~~~~t~~dl~~~~~~hPt~sE~~~~~~  471 (486)
T TIGR01423       412 AKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKLNAKISDFYNTIGVHPTSAEELCSMR  471 (486)
T ss_pred             EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCCcHHHHHhhc
Confidence            689999999999999999999999999999999999999999999999999999887664

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.87  E-value=5.2e-09  Score=100.52  Aligned_cols=62  Identities=15%  Similarity=0.171  Sum_probs=58.8

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI   63 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~   63 (296)
                      ++|+|+|++|++|||+|++|++|+|+|+.++++|+++++.++|..++++|||++|.+...++
T Consensus       590 ~vKli~d~~t~rILGa~ivG~~A~elI~~~a~aI~~~~tv~dl~~~~~~hPT~sE~~~~a~~  651 (659)
T PTZ00153        590 MVKIVYLKDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAHMVHSHPTISEVLDAAFK  651 (659)
T ss_pred             EEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCChHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999877665

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.87  E-value=6e-09  Score=97.01  Aligned_cols=61  Identities=16%  Similarity=0.184  Sum_probs=58.1

Q ss_pred             cceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665           3 LPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI   63 (296)
Q Consensus         3 ~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~   63 (296)
                      +|+++|++|++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.++..++
T Consensus       389 ~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~  449 (458)
T PRK06912        389 VKVIVEPKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSEAIHEALL  449 (458)
T ss_pred             EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCCHHHHHHHHHH
Confidence            7899999999999999999999999999999999999999999999999999999877654

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.87  E-value=4.6e-09  Score=97.46  Aligned_cols=59  Identities=32%  Similarity=0.514  Sum_probs=56.1

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISL   60 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v   60 (296)
                      .+|+++|++|++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.+..
T Consensus       386 ~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~  444 (446)
T TIGR01424       386 LMKLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKADFDSTVGIHPSSAEEFVT  444 (446)
T ss_pred             EEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCChHHHHhh
Confidence            47899999999999999999999999999999999999999999999999999998753

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.87  E-value=3.5e-08  Score=94.49  Aligned_cols=31  Identities=35%  Similarity=0.562  Sum_probs=29.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      .||+|||+|.||+.||+.+++.|.+|+|+||
T Consensus         4 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK   34 (589)
T PRK08641          4 GKVIVVGGGLAGLMATIKAAEAGVHVDLFSL   34 (589)
T ss_pred             ccEEEECchHHHHHHHHHHHHcCCcEEEEEc
Confidence            4999999999999999999999999999994

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.87  E-value=1.8e-07  Score=85.48  Aligned_cols=32  Identities=31%  Similarity=0.591  Sum_probs=30.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhC--CCcEEEEec
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASM--NKKVALFDF  146 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~  146 (296)
                      .+||+|||||.+|+++|++|+++  |.+|+|+|+
T Consensus         2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~   35 (393)
T PRK11728          2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEK   35 (393)
T ss_pred             CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            37999999999999999999999  999999993

>PRK06116 glutathione reductase; Validated

Probab=98.86  E-value=4.8e-09  Score=97.45  Aligned_cols=59  Identities=29%  Similarity=0.404  Sum_probs=56.1

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISL   60 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v   60 (296)
                      .+|+++|++|++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.+..
T Consensus       390 ~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~  448 (450)
T PRK06116        390 LMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAEEFVT  448 (450)
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHhh
Confidence            47899999999999999999999999999999999999999999999999999998754

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.86  E-value=6.2e-09  Score=96.49  Aligned_cols=62  Identities=13%  Similarity=0.113  Sum_probs=58.2

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI   63 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~   63 (296)
                      .+|+|+|++|++|||+|++|++|+|+|+.++++|+++++.++|.+.+++|||++|.+...+.
T Consensus       377 ~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~  438 (441)
T PRK08010        377 VLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLFS  438 (441)
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhccccCCchHHHHHHHHH
Confidence            37899999999999999999999999999999999999999999999999999998876654

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.86  E-value=3.6e-08  Score=94.35  Aligned_cols=149  Identities=19%  Similarity=0.275  Sum_probs=80.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCc----hhH-----------------
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIP----KKL-----------------  172 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p----~~~-----------------  172 (296)
                      ..+||+|||||.|||.||+.+++. .+|+|+||.....-++.+..||.+...+..+    ...                 
T Consensus         4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g~s~~a~Ggi~a~~~~~~~D~~e~~~~d~~~~g~~~~d~~~v   82 (583)
T PRK08205          4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRSHTGAAQGGMCAALANVEEDNWEWHTFDTVKGGDYLVDQDAA   82 (583)
T ss_pred             eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCCCchhhhcchhhcccCCCCCCHHHHHHHHHHhhcCCCCHHHH
Confidence            457999999999999999999986 9999999432211112223355443222111    111                 


Q ss_pred             HHHhhhhHHHhhcccccCccccccCCHH-------------------HHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceE
Q psy7665         173 FHRASLLNEEATTSDNFGFHMKKSFTWK-------------------TLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA  233 (296)
Q Consensus       173 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  233 (296)
                      ........+.+.++..+|+++....+..                   ............+...+...+.+.+|+++....
T Consensus        83 ~~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~r~~~~~~~tG~~i~~~L~~~~~~~gv~i~~~~~  162 (583)
T PRK08205         83 EIMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGKAPVRRACYAADRTGHMILQTLYQNCVKHGVEFFNEFY  162 (583)
T ss_pred             HHHHHHHHHHHHHHHHcCCccccCCCCceeecccccccccccCCCccceeccCCCCHHHHHHHHHHHHHhcCCEEEeCCE
Confidence            1111223445666777787764311100                   000000001123344456666777999877643


Q ss_pred             E--EE-eC----CEE---EE----cceeEEEEeCeEEEcCCCCC
Q psy7665         234 V--FV-DK----HRV---KF----AGEERTVSAQNFIIAVGGRP  263 (296)
Q Consensus       234 ~--~~-~~----~~v---~v----~g~~~~~~a~~vV~AtG~~p  263 (296)
                      .  .. ++    ..+   ..    +++...+.|+.||+|||...
T Consensus       163 v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  206 (583)
T PRK08205        163 VLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG  206 (583)
T ss_pred             EEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence            2  12 22    222   21    34345689999999999743

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.86  E-value=1.9e-08  Score=97.18  Aligned_cols=33  Identities=27%  Similarity=0.338  Sum_probs=31.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ..+||+|||||.||+.||+.+++.|.+|+|+|+
T Consensus         4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK   36 (657)
T PRK08626          4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSL   36 (657)
T ss_pred             eeccEEEECccHHHHHHHHHHHHcCCCEEEEeC
Confidence            567999999999999999999999999999994

>PLN02815 L-aspartate oxidase

Probab=98.86  E-value=2.8e-08  Score=94.85  Aligned_cols=33  Identities=36%  Similarity=0.484  Sum_probs=30.5

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      +..+||+|||+|.|||.||+.+++.| +|+|+||
T Consensus        27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK   59 (594)
T PLN02815         27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITK   59 (594)
T ss_pred             ccccCEEEECccHHHHHHHHHHhhCC-CEEEEEC
Confidence            45689999999999999999999999 9999993

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=98.86  E-value=4.8e-09  Score=96.44  Aligned_cols=108  Identities=22%  Similarity=0.367  Sum_probs=72.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ...+|+||||||+|+.+|..|++.|++|+++|  +.+      ..||..                         .||++.
T Consensus       122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e--~~~------~~GGll-------------------------~yGIP~  168 (457)
T COG0493         122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFE--RVA------LDGGLL-------------------------LYGIPD  168 (457)
T ss_pred             CCCEEEEECCCchHhhhHHHHHhCCCeEEEeC--CcC------CCceeE-------------------------EecCch
Confidence            45799999999999999999999999999999  677      778843                         233321


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCC-CCCCCCCCCCc
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGG-RPTYPDIPGAR  272 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~-~p~~p~i~G~~  272 (296)
                      .     . +.       .++.....+.|+..|++++.+...   ...++...  -.-.+|+|++|+|+ .|+..++||.+
T Consensus       169 ~-----k-l~-------k~i~d~~i~~l~~~Gv~~~~~~~v---G~~it~~~--L~~e~Dav~l~~G~~~~~~l~i~g~d  230 (457)
T COG0493         169 F-----K-LP-------KDILDRRLELLERSGVEFKLNVRV---GRDITLEE--LLKEYDAVFLATGAGKPRPLDIPGED  230 (457)
T ss_pred             h-----h-cc-------chHHHHHHHHHHHcCeEEEEcceE---CCcCCHHH--HHHhhCEEEEeccccCCCCCCCCCcC
Confidence            0     0 00       111222345667779888765421   11222211  22345999999996 78888899986

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.86  E-value=1.7e-08  Score=96.53  Aligned_cols=32  Identities=31%  Similarity=0.512  Sum_probs=29.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--CcEEEEec
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMN--KKVALFDF  146 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE~  146 (296)
                      .+||+|||||.||+.||+.+++.|  .+|+|+||
T Consensus         3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK   36 (575)
T PRK05945          3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAK   36 (575)
T ss_pred             cccEEEECccHHHHHHHHHHHHhcCCCcEEEEec
Confidence            569999999999999999999874  89999993

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.85  E-value=7.1e-09  Score=96.94  Aligned_cols=62  Identities=15%  Similarity=0.217  Sum_probs=58.4

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI   63 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~   63 (296)
                      .+|+|+|++|++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.+...+.
T Consensus       405 ~~klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~  466 (475)
T PRK06327        405 FVKIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIARICHAHPTLSEVWHEAAL  466 (475)
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCCcCCCChHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999876653

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.85  E-value=3.5e-08  Score=94.18  Aligned_cols=148  Identities=20%  Similarity=0.188  Sum_probs=79.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC--CCcEEEEeccCCCCCCcc--cccCCeeeccC--CC-----------------ch
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASM--NKKVALFDFVTPSQHGTV--WGLGGTCVNVG--CI-----------------PK  170 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~~~~~~~g~~--~~~GG~~~~~~--~~-----------------p~  170 (296)
                      ..+||+|||||.||+.||+.+++.  |.+|+|+|  +....+++  +.-||.+...+  ..                 |.
T Consensus         2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lve--K~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~   79 (580)
T TIGR01176         2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALIS--KVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQD   79 (580)
T ss_pred             cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEE--ccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHH
Confidence            357999999999999999999987  58999999  44433332  22255442211  11                 11


Q ss_pred             hHHHHhhhhHHHhhcccccCccccccCC----HHH-----HHH---HHHHHHHHHHHHHHHHHHH-CCcEEEcceE--E-
Q psy7665         171 KLFHRASLLNEEATTSDNFGFHMKKSFT----WKT-----LVD---NVQKYIRNLNNNYEKELEK-NKIDYFNAKA--V-  234 (296)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~-----~~~---~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~--~-  234 (296)
                      .+........+.+.++..+|+++....+    ...     ..+   .....-..+...+...+.+ .+++++....  . 
T Consensus        80 lv~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~L  159 (580)
T TIGR01176        80 VVEYFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMKKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDL  159 (580)
T ss_pred             HHHHHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCccCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEE
Confidence            1122222344455667777776642110    000     000   0000112233334444444 3788776532  1 


Q ss_pred             EEeCCEEE----E---cceeEEEEeCeEEEcCCCCC
Q psy7665         235 FVDKHRVK----F---AGEERTVSAQNFIIAVGGRP  263 (296)
Q Consensus       235 ~~~~~~v~----v---~g~~~~~~a~~vV~AtG~~p  263 (296)
                      ..+...+.    +   ++....+.|+.||+|||...
T Consensus       160 i~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~  195 (580)
T TIGR01176       160 LVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAG  195 (580)
T ss_pred             EeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence            12333332    1   34446789999999999633

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.85  E-value=7.1e-09  Score=96.77  Aligned_cols=62  Identities=24%  Similarity=0.309  Sum_probs=58.8

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI   63 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~   63 (296)
                      .+|+++|++|++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.++..+.
T Consensus       395 ~~kli~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~  456 (471)
T PRK06467        395 MTKLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAE  456 (471)
T ss_pred             EEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHHH
Confidence            37899999999999999999999999999999999999999999999999999999987765

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.85  E-value=3.2e-08  Score=95.06  Aligned_cols=33  Identities=39%  Similarity=0.543  Sum_probs=30.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC--CCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASM--NKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~  146 (296)
                      ..+||+|||||.||+.||+.+++.  |.+|+|+||
T Consensus        10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK   44 (608)
T PRK06854         10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEK   44 (608)
T ss_pred             eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEEC
Confidence            567999999999999999999998  999999994

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.85  E-value=7.3e-09  Score=96.81  Aligned_cols=62  Identities=21%  Similarity=0.283  Sum_probs=58.6

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI   63 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~   63 (296)
                      .+|+++|++|++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.+...++
T Consensus       402 ~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~  463 (472)
T PRK05976        402 FVKVVADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHPHPTLSEAIQEAAL  463 (472)
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999876664

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.85  E-value=2.2e-08  Score=94.32  Aligned_cols=30  Identities=47%  Similarity=0.704  Sum_probs=29.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      |||+|||||++|+++|..+++.|.+|+|+|
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie   30 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLT   30 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEe
Confidence            699999999999999999999999999999

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PLN02661 Putative thiazole synthesis

Probab=98.84  E-value=3.7e-08  Score=87.03  Aligned_cols=36  Identities=36%  Similarity=0.543  Sum_probs=32.1

Q ss_pred             CccccEEEECCChHHHHHHHHHHhC-CCcEEEEeccCCC
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASM-NKKVALFDFVTPS  150 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~-G~~V~iiE~~~~~  150 (296)
                      ..++||+|||||++|+.||++|++. |++|+|+|  +..
T Consensus        90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viE--k~~  126 (357)
T PLN02661         90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIE--QSV  126 (357)
T ss_pred             cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEe--cCc
Confidence            3568999999999999999999986 89999999  555

>PRK08275 putative oxidoreductase; Provisional

Probab=98.84  E-value=3.8e-08  Score=93.66  Aligned_cols=148  Identities=22%  Similarity=0.296  Sum_probs=78.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC--CCcEEEEeccCCCCC-Cccccc--CCeee--ccC-CCchhH-------------
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASM--NKKVALFDFVTPSQH-GTVWGL--GGTCV--NVG-CIPKKL-------------  172 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~~~~~~~-g~~~~~--GG~~~--~~~-~~p~~~-------------  172 (296)
                      ..+||+|||||.||+.||+.+++.  |.+|+|+||  .... +.+...  ||.+.  ..+ .-|..+             
T Consensus         8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK--~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d   85 (554)
T PRK08275          8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEK--ANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVD   85 (554)
T ss_pred             EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeC--CCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCcc
Confidence            568999999999999999999987  689999994  3321 111111  12111  000 111111             


Q ss_pred             ----HHHhhhhHHHhhcccccCcccccc----CCHHHHHH---HH--HHHHHHHHHHHHHHHHHCCcEEEcceEE--EE-
Q psy7665         173 ----FHRASLLNEEATTSDNFGFHMKKS----FTWKTLVD---NV--QKYIRNLNNNYEKELEKNKIDYFNAKAV--FV-  236 (296)
Q Consensus       173 ----~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~-  236 (296)
                          ........+.+.++..+|+++...    +.......   +.  ......+...+...+++.+++++.....  .. 
T Consensus        86 ~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~  165 (554)
T PRK08275         86 QKAVYAYAEHSFETIQQLDRWGVKFEKDETGDYAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLLT  165 (554)
T ss_pred             HHHHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEEEE
Confidence                111222344556666777766431    11100000   00  0011233445556667779998776432  22 


Q ss_pred             e-CCEE---EE----cceeEEEEeCeEEEcCCCCC
Q psy7665         237 D-KHRV---KF----AGEERTVSAQNFIIAVGGRP  263 (296)
Q Consensus       237 ~-~~~v---~v----~g~~~~~~a~~vV~AtG~~p  263 (296)
                      + ...+   .+    ++....+.++.||+|||...
T Consensus       166 ~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~  200 (554)
T PRK08275        166 DADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG  200 (554)
T ss_pred             cCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence            2 2222   22    34335689999999999754

>TIGR00551 nadB L-aspartate oxidase

Probab=98.83  E-value=3.7e-08  Score=92.41  Aligned_cols=146  Identities=17%  Similarity=0.231  Sum_probs=77.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCc-c-cccCCeeecc--CCC-----------------chhHH
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGT-V-WGLGGTCVNV--GCI-----------------PKKLF  173 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~-~-~~~GG~~~~~--~~~-----------------p~~~~  173 (296)
                      .+||+|||+|.||+.||+.+++.|. |+|+|  +.+..+. + +.-||.+...  ...                 |....
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lle--K~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~   78 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALADQGR-VIVLS--KAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVE   78 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHhCCC-EEEEE--ccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHH
Confidence            3699999999999999999999998 99999  4432222 1 1224433211  011                 11111


Q ss_pred             HHhhhhHHHhhcccccCccccccCC------------HHHHHHHHHHHHHHHHHHHHHHHHH-CCcEEEcceEEE--E-e
Q psy7665         174 HRASLLNEEATTSDNFGFHMKKSFT------------WKTLVDNVQKYIRNLNNNYEKELEK-NKIDYFNAKAVF--V-D  237 (296)
Q Consensus       174 ~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~--~-~  237 (296)
                      .......+.+.++..+|+++....+            +.............+...+.+.+++ .+++++......  . +
T Consensus        79 ~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~  158 (488)
T TIGR00551        79 FVVSDARSAVQWLVDQGVLFDRHEQGSYALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLIE  158 (488)
T ss_pred             HHHHhHHHHHHHHHHcCCcceeCCCCCccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeecc
Confidence            1222334455666667776642100            0000000000112333445555665 589987764321  2 2


Q ss_pred             CCEEE---E-c-ceeEEEEeCeEEEcCCCCC
Q psy7665         238 KHRVK---F-A-GEERTVSAQNFIIAVGGRP  263 (296)
Q Consensus       238 ~~~v~---v-~-g~~~~~~a~~vV~AtG~~p  263 (296)
                      ...+.   + + ++...+.++.||+|||...
T Consensus       159 ~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~  189 (488)
T TIGR00551       159 TGRVVGVWVWNRETVETCHADAVVLATGGAG  189 (488)
T ss_pred             CCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence            33332   2 2 3335689999999999744

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.83  E-value=1.6e-08  Score=91.44  Aligned_cols=32  Identities=19%  Similarity=0.340  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHhC--CCcEEEEeccCCC
Q psy7665         117 DLCVIGGGSGGISAAKEAASM--NKKVALFDFVTPS  150 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~~~~~  150 (296)
                      ||+|||||++|+++|..|++.  |++|+++|  +.+
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle--~~~   34 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIE--AGR   34 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEe--CCC
Confidence            799999999999999999987  99999999  544

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.83  E-value=9.8e-09  Score=95.68  Aligned_cols=62  Identities=16%  Similarity=0.165  Sum_probs=58.3

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI   63 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~   63 (296)
                      .+|+|+|++|++|||+|++|++|+|+|+.++++|+++.+.++|.+++++|||++|.+...++
T Consensus       390 ~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~  451 (460)
T PRK06292        390 FVKVYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLSEGLRTALR  451 (460)
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999876654

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.83  E-value=2.1e-08  Score=91.55  Aligned_cols=32  Identities=13%  Similarity=0.256  Sum_probs=30.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      .+||+||||||+|+++|..|++.|++|+|+|+
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~   33 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLER   33 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEc
Confidence            36999999999999999999999999999993

>TIGR03452 mycothione_red mycothione reductase

Probab=98.83  E-value=9.1e-09  Score=95.57  Aligned_cols=61  Identities=15%  Similarity=0.207  Sum_probs=56.7

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccC-cCCCCChHHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDAL-IGIHPTCAEAISLSW   62 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~-i~~~pt~~e~l~v~~   62 (296)
                      .+|+|+|++|++|||+|++|++|+|+|+.++++|+++++.++|... +++|||++|.+...+
T Consensus       388 ~~Klv~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a~  449 (452)
T TIGR03452       388 FCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPEVVENAL  449 (452)
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCcccCCchHHHHHHHH
Confidence            3789999999999999999999999999999999999999999986 789999999887654

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.82  E-value=3.7e-08  Score=93.56  Aligned_cols=32  Identities=34%  Similarity=0.433  Sum_probs=30.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ..+||+|||+|.||+.||+.+ +.|.+|+|+||
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK   37 (543)
T PRK06263          6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSK   37 (543)
T ss_pred             eccCEEEECccHHHHHHHHHH-hcCCCEEEEEc
Confidence            567999999999999999999 99999999994

>PRK07190 hypothetical protein; Provisional

Probab=98.82  E-value=3.6e-08  Score=92.31  Aligned_cols=33  Identities=21%  Similarity=0.251  Sum_probs=30.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ..+||+||||||+|+++|..|++.|.+|+|+|+
T Consensus         4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr   36 (487)
T PRK07190          4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDK   36 (487)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeC
Confidence            347999999999999999999999999999993

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.82  E-value=2.7e-08  Score=91.39  Aligned_cols=33  Identities=27%  Similarity=0.574  Sum_probs=31.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ..+||+|||||++|+++|..|++.|++|+|+|+
T Consensus        17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~   49 (415)
T PRK07364         17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEA   49 (415)
T ss_pred             cccCEEEECcCHHHHHHHHHHhcCCCEEEEEec
Confidence            457999999999999999999999999999993

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.82  E-value=2.5e-08  Score=90.80  Aligned_cols=33  Identities=36%  Similarity=0.492  Sum_probs=31.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      +.+||+||||||+|+++|+.|++.|.+|+|+|+
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~   36 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAP   36 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEec
Confidence            457999999999999999999999999999993

>PTZ00058 glutathione reductase; Provisional

Probab=98.81  E-value=9.1e-09  Score=97.44  Aligned_cols=59  Identities=36%  Similarity=0.419  Sum_probs=56.2

Q ss_pred             cceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHH
Q psy7665           3 LPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLS   61 (296)
Q Consensus         3 ~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~   61 (296)
                      +|+|+|+++++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.+...
T Consensus       498 ~Kli~~~~t~~ILG~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt~~e~~~~~  556 (561)
T PTZ00058        498 LKLVCVGKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAEEFVTM  556 (561)
T ss_pred             EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCChHHHHHHh
Confidence            78999999999999999999999999999999999999999999999999999987554

>PRK11445 putative oxidoreductase; Provisional

Probab=98.81  E-value=2.5e-08  Score=89.63  Aligned_cols=29  Identities=38%  Similarity=0.549  Sum_probs=28.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      |||+||||||+|+++|..|++. ++|+|+|
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE   30 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK-MKVIAID   30 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc-CCEEEEE
Confidence            6999999999999999999999 9999999

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.81  E-value=1.9e-07  Score=84.35  Aligned_cols=31  Identities=32%  Similarity=0.503  Sum_probs=29.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      +||+|||||.+|+++|++|++.|++|+|+|+
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~   31 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIER   31 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence            5899999999999999999999999999994

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.81  E-value=1.8e-07  Score=89.06  Aligned_cols=42  Identities=31%  Similarity=0.572  Sum_probs=36.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeee
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCV  163 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~  163 (296)
                      .++||+|||+|.+|+++|+.+++.|.+|+|||  +..      ..||++.
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liE--k~~------~~gG~~~   46 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVE--KQD------KVGGSTA   46 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEe--cCC------CCCceec
Confidence            46799999999999999999999999999999  555      4566553

>PRK06184 hypothetical protein; Provisional

Probab=98.80  E-value=2.6e-08  Score=93.87  Aligned_cols=32  Identities=25%  Similarity=0.396  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      .+||+||||||+|+++|..|++.|.+|+|+|+
T Consensus         3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~   34 (502)
T PRK06184          3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEK   34 (502)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeC
Confidence            47999999999999999999999999999993

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.80  E-value=6.9e-08  Score=89.39  Aligned_cols=133  Identities=14%  Similarity=0.133  Sum_probs=83.2

Q ss_pred             cceeeeeeeccccCCccchhhhccCcceeecc-----ccC-CCCccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCC
Q psy7665          76 HTPYLVLAKARFLLPTLECQEVYHDGRFYDYL-----DNN-FQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTP  149 (296)
Q Consensus        76 ~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~  149 (296)
                      ..+|.+++|+|+.+..++... .......++.     ... ......+|+|||||+.|+++|..|++.|.+|++++  +.
T Consensus       104 ~~yd~lviAtGs~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~--~~  180 (438)
T PRK13512        104 ESYDKLILSPGASANSLGFES-DITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIH--RS  180 (438)
T ss_pred             eecCEEEECCCCCCCCCCCCC-CCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEe--cc
Confidence            478999999998875544211 1111111110     000 00123489999999999999999999999999999  43


Q ss_pred             CCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEE
Q psy7665         150 SQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYF  229 (296)
Q Consensus       150 ~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  229 (296)
                      +      .+..                                   ..+            ..+...+...+++.|++++
T Consensus       181 ~------~l~~-----------------------------------~~d------------~~~~~~l~~~l~~~gI~i~  207 (438)
T PRK13512        181 D------KINK-----------------------------------LMD------------ADMNQPILDELDKREIPYR  207 (438)
T ss_pred             c------ccch-----------------------------------hcC------------HHHHHHHHHHHHhcCCEEE
Confidence            3      1000                                   000            1122334556778899998


Q ss_pred             cceE-EEEeCCEEEE-cceeEEEEeCeEEEcCCCCCCCC
Q psy7665         230 NAKA-VFVDKHRVKF-AGEERTVSAQNFIIAVGGRPTYP  266 (296)
Q Consensus       230 ~~~~-~~~~~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p  266 (296)
                      .+.. ...+...+++ ++  ..+.+|.|++|+|.+|+..
T Consensus       208 ~~~~v~~i~~~~v~~~~g--~~~~~D~vl~a~G~~pn~~  244 (438)
T PRK13512        208 LNEEIDAINGNEVTFKSG--KVEHYDMIIEGVGTHPNSK  244 (438)
T ss_pred             ECCeEEEEeCCEEEECCC--CEEEeCEEEECcCCCcChH
Confidence            6543 3344456666 45  4689999999999988753

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.80  E-value=7.6e-09  Score=97.19  Aligned_cols=59  Identities=42%  Similarity=0.566  Sum_probs=54.5

Q ss_pred             cceeecC-CCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHH
Q psy7665           3 LPKLGGS-EVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLS   61 (296)
Q Consensus         3 ~~~~~~~-~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~   61 (296)
                      +|+++|+ +|++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.+...
T Consensus       418 ~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPt~sE~~~~~  477 (499)
T PTZ00052        418 AKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALKLGAKKSDFDSMIGIHPTDAEVFMNL  477 (499)
T ss_pred             EEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCCCchhhEEE
Confidence            5888997 4899999999999999999999999999999999999999999999976433

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.80  E-value=1.5e-08  Score=92.98  Aligned_cols=40  Identities=20%  Similarity=0.348  Sum_probs=34.0

Q ss_pred             cccEEEECCChHHHHHHHHHH-hCCCcEEEEeccCCCCCCcccccCCee
Q psy7665         115 DYDLCVIGGGSGGISAAKEAA-SMNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~-~~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      ...|+||||||||++||.+|+ +.|++|+|+|  +.+      .+||.+
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfE--k~p------~pgGLv   79 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFE--KLP------NPYGLI   79 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEe--cCC------CCccEE
Confidence            358999999999999999865 6799999999  677      677754

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.80  E-value=3.1e-08  Score=93.97  Aligned_cols=33  Identities=27%  Similarity=0.437  Sum_probs=29.7

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      +..+||+|||+|.||+.||+.++ .|.+|+|+||
T Consensus         7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK   39 (553)
T PRK07395          7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITK   39 (553)
T ss_pred             cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEc
Confidence            45689999999999999999996 4999999994

>KOG0399|consensus

Probab=98.80  E-value=1.8e-08  Score=97.93  Aligned_cols=110  Identities=19%  Similarity=0.363  Sum_probs=75.2

Q ss_pred             CCccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCc
Q psy7665         112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGF  191 (296)
Q Consensus       112 ~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~  191 (296)
                      ...++.|.|||.||+|+.||-+|-+.|+.|+|+|  +.+      .+||                         +..||+
T Consensus      1782 ~rtg~~vaiigsgpaglaaadqlnk~gh~v~vye--r~d------r~gg-------------------------ll~ygi 1828 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYE--RSD------RVGG-------------------------LLMYGI 1828 (2142)
T ss_pred             cccCcEEEEEccCchhhhHHHHHhhcCcEEEEEE--ecC------CcCc-------------------------eeeecC
Confidence            4467899999999999999999999999999999  777      8888                         344555


Q ss_pred             cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCC-CCCCCCCCC
Q psy7665         192 HMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGG-RPTYPDIPG  270 (296)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~-~p~~p~i~G  270 (296)
                      +.- ++|....            ..-.+.+...|+++++++.  +.++ +..+.  -.-..|+||+|+|+ .|+-.++||
T Consensus      1829 pnm-kldk~vv------------~rrv~ll~~egi~f~tn~e--igk~-vs~d~--l~~~~daiv~a~gst~prdlpv~g 1890 (2142)
T KOG0399|consen 1829 PNM-KLDKFVV------------QRRVDLLEQEGIRFVTNTE--IGKH-VSLDE--LKKENDAIVLATGSTTPRDLPVPG 1890 (2142)
T ss_pred             Ccc-chhHHHH------------HHHHHHHHhhCceEEeecc--cccc-ccHHH--HhhccCeEEEEeCCCCCcCCCCCC
Confidence            431 1111101            1112445666999987542  2222 32233  33457999999997 788788998


Q ss_pred             Cc
Q psy7665         271 AR  272 (296)
Q Consensus       271 ~~  272 (296)
                      -+
T Consensus      1891 rd 1892 (2142)
T KOG0399|consen 1891 RD 1892 (2142)
T ss_pred             cc
Confidence            65

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.80  E-value=4e-08  Score=91.06  Aligned_cols=35  Identities=34%  Similarity=0.517  Sum_probs=31.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-CcEEEEeccCCCCCC
Q psy7665         117 DLCVIGGGSGGISAAKEAASMN-KKVALFDFVTPSQHG  153 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE~~~~~~~g  153 (296)
                      ||||||||.+|++||+.++++| .+|+|+|  +.+..|
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlE--k~~~~g   36 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLE--KMPVIG   36 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEe--cCCCCC
Confidence            7999999999999999999999 9999999  555433

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.79  E-value=6.2e-08  Score=88.57  Aligned_cols=133  Identities=16%  Similarity=0.155  Sum_probs=81.4

Q ss_pred             cceeeeeeeccccCCccchhhhcc--Ccc---eeec--cccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEeccC
Q psy7665          76 HTPYLVLAKARFLLPTLECQEVYH--DGR---FYDY--LDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVT  148 (296)
Q Consensus        76 ~~p~~v~~~~~~~~~~~~~~~~~~--~~~---~~~~--~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~  148 (296)
                      +.+|.+++|+|+.+..++......  ...   ..+.  +... .....+|+|||||+.|+++|..|++.|.+|+|+|  +
T Consensus        99 ~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~-~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~--~  175 (396)
T PRK09754         99 WHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREV-LQPERSVVIVGAGTIGLELAASATQRRCKVTVIE--L  175 (396)
T ss_pred             EEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHH-hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEe--c
Confidence            678999999998765444322111  111   1111  1111 0123489999999999999999999999999999  4


Q ss_pred             CCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEE
Q psy7665         149 PSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDY  228 (296)
Q Consensus       149 ~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  228 (296)
                      .+      .+.+.                                           ...   ......+...+++.||++
T Consensus       176 ~~------~~l~~-------------------------------------------~~~---~~~~~~l~~~l~~~GV~i  203 (396)
T PRK09754        176 AA------TVMGR-------------------------------------------NAP---PPVQRYLLQRHQQAGVRI  203 (396)
T ss_pred             CC------cchhh-------------------------------------------hcC---HHHHHHHHHHHHHCCCEE
Confidence            33      11110                                           000   111223445567789999


Q ss_pred             EcceE-EEE-eCCEEE--E-cceeEEEEeCeEEEcCCCCCCC
Q psy7665         229 FNAKA-VFV-DKHRVK--F-AGEERTVSAQNFIIAVGGRPTY  265 (296)
Q Consensus       229 ~~~~~-~~~-~~~~v~--v-~g~~~~~~a~~vV~AtG~~p~~  265 (296)
                      +.+.. ... ....+.  + ++  ..+.||.||+|+|.+|+.
T Consensus       204 ~~~~~V~~i~~~~~~~v~l~~g--~~i~aD~Vv~a~G~~pn~  243 (396)
T PRK09754        204 LLNNAIEHVVDGEKVELTLQSG--ETLQADVVIYGIGISAND  243 (396)
T ss_pred             EeCCeeEEEEcCCEEEEEECCC--CEEECCEEEECCCCChhh
Confidence            87643 222 223333  3 45  568999999999998764

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.78  E-value=1.7e-08  Score=94.08  Aligned_cols=62  Identities=21%  Similarity=0.212  Sum_probs=58.3

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI   63 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~   63 (296)
                      .+|+|+|++|++|||+|++|++++|+|+.++++|+.+++.++|.+++++|||++|.+...+.
T Consensus       392 ~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~  453 (462)
T PRK06416        392 FVKLIFDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLSEALGEAAL  453 (462)
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999998876654

>PRK07846 mycothione reductase; Reviewed

Probab=98.78  E-value=1.7e-08  Score=93.77  Aligned_cols=62  Identities=15%  Similarity=0.209  Sum_probs=57.1

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCc-CCCCChHHHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALI-GIHPTCAEAISLSWI   63 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i-~~~pt~~e~l~v~~~   63 (296)
                      .+|+|+|++|++|||+|++|++|+|+|+.++++|+++++.++|.... ++|||++|.++..++
T Consensus       385 ~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a~~  447 (451)
T PRK07846        385 FVKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQYWIHPALPEVVENALL  447 (451)
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCCccCCcHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999865 799999999876654

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.78  E-value=5.6e-08  Score=88.95  Aligned_cols=31  Identities=26%  Similarity=0.389  Sum_probs=29.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC--CcEEEEec
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMN--KKVALFDF  146 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE~  146 (296)
                      |||+||||||+|+++|..|++.|  .+|+|+|+
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~   34 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDA   34 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeC
Confidence            69999999999999999999996  99999993

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.78  E-value=4.8e-08  Score=92.83  Aligned_cols=33  Identities=21%  Similarity=0.409  Sum_probs=31.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ..+||+||||||+|+++|..|++.|.+|+|+|+
T Consensus         9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er   41 (538)
T PRK06183          9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLER   41 (538)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence            457999999999999999999999999999993

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.77  E-value=1.6e-08  Score=99.81  Aligned_cols=161  Identities=19%  Similarity=0.252  Sum_probs=98.2

Q ss_pred             CCCCChHHHHHHHHHhhcCCCCcee----------eccceeeeeeeccccCCccchhhhccCc--cee---ec--cccCC
Q psy7665          49 GIHPTCAEAISLSWIKGYNIEPEVI----------KLHTPYLVLAKARFLLPTLECQEVYHDG--RFY---DY--LDNNF  111 (296)
Q Consensus        49 ~~~pt~~e~l~v~~~~~~~~~~~~~----------~~~~p~~v~~~~~~~~~~~~~~~~~~~~--~~~---~~--~~~~~  111 (296)
                      ...+.+.+..++.+++++.++.-..          ..+.+|.+|+|+|+.+..++.++.....  ...   +.  +... 
T Consensus        58 ~~~~~~~~~~gv~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~-  136 (785)
T TIGR02374        58 LNSKDWYEKHGITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAM-  136 (785)
T ss_pred             CCCHHHHHHCCCEEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHH-
Confidence            3344455666777777765432111          2467999999999877666555433211  111   11  1100 


Q ss_pred             CCccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCc
Q psy7665         112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGF  191 (296)
Q Consensus       112 ~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~  191 (296)
                      .....+++|||||+.|+++|..|++.|.+|+|+|  +.+      .+                                 
T Consensus       137 ~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~--~~~------~l---------------------------------  175 (785)
T TIGR02374       137 AQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIH--HAP------GL---------------------------------  175 (785)
T ss_pred             hhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEc--cCC------ch---------------------------------
Confidence            0123479999999999999999999999999999  333      00                                 


Q ss_pred             cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceE-E-EEeCC---EEEE-cceeEEEEeCeEEEcCCCCCCC
Q psy7665         192 HMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA-V-FVDKH---RVKF-AGEERTVSAQNFIIAVGGRPTY  265 (296)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~~~~---~v~v-~g~~~~~~a~~vV~AtG~~p~~  265 (296)
                                +...+.   ......+...+++.||+++.+.. . .....   .+.+ +|  ..+.+|.||+|+|.+|+.
T Consensus       176 ----------l~~~ld---~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG--~~i~~D~Vi~a~G~~Pn~  240 (785)
T TIGR02374       176 ----------MAKQLD---QTAGRLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDG--SSLEADLIVMAAGIRPND  240 (785)
T ss_pred             ----------hhhhcC---HHHHHHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCC--CEEEcCEEEECCCCCcCc
Confidence                      000011   11123345566778999987653 2 22221   2444 55  579999999999998865


Q ss_pred             C
Q psy7665         266 P  266 (296)
Q Consensus       266 p  266 (296)
                      .
T Consensus       241 ~  241 (785)
T TIGR02374       241 E  241 (785)
T ss_pred             H
Confidence            3

>TIGR02053 MerA mercuric reductase

Probab=98.77  E-value=2e-08  Score=93.67  Aligned_cols=63  Identities=17%  Similarity=0.219  Sum_probs=59.7

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHHh
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWIK   64 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~~   64 (296)
                      .+|+++|++|++|||+|++|++|+|+|+.++++|+++.+.++|.+++++|||.+|.+....+.
T Consensus       388 ~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~pt~~e~~~~a~~~  450 (463)
T TIGR02053       388 FIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTMAEGLKLAAQT  450 (463)
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999999999999888764

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.77  E-value=1.8e-08  Score=94.32  Aligned_cols=61  Identities=34%  Similarity=0.551  Sum_probs=56.5

Q ss_pred             cceeec-CCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665           3 LPKLGG-SEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI   63 (296)
Q Consensus         3 ~~~~~~-~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~   63 (296)
                      +|+|++ ++|++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.+...++
T Consensus       408 ~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~~t~~dl~~~~~~hPt~sE~~~~~~~  469 (484)
T TIGR01438       408 AKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCGLTKKDLDNTIGIHPVCAEVFTTLSV  469 (484)
T ss_pred             EEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhhhcCCCChHHHHHHhhh
Confidence            678885 5799999999999999999999999999999999999999999999999877764

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.76  E-value=1.4e-07  Score=89.94  Aligned_cols=35  Identities=29%  Similarity=0.520  Sum_probs=32.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      ..+||+|||+|++|+++|+.+++.|.+|+|||  +..
T Consensus         6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llE--k~~   40 (557)
T PRK07843          6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVE--KAP   40 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEe--CCC
Confidence            46799999999999999999999999999999  555

>PRK08013 oxidoreductase; Provisional

Probab=98.75  E-value=5.5e-08  Score=89.00  Aligned_cols=32  Identities=25%  Similarity=0.428  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      .+||+||||||+|+++|..|++.|++|+|+|+
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~   34 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQ   34 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeC
Confidence            47999999999999999999999999999993

>KOG2311|consensus

Probab=98.75  E-value=4.8e-08  Score=87.60  Aligned_cols=33  Identities=42%  Similarity=0.681  Sum_probs=31.1

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..|||||||||+|||+||..+++.|.+++++.
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT   58 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLT   58 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhcCCceEEee
Confidence            467899999999999999999999999999998

>PRK07588 hypothetical protein; Provisional

Probab=98.75  E-value=8.9e-08  Score=87.34  Aligned_cols=30  Identities=17%  Similarity=0.225  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ||+|||||++|+++|..|++.|++|+|+|+
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~   31 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIER   31 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeC
Confidence            799999999999999999999999999994

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.75  E-value=1.2e-07  Score=89.43  Aligned_cols=31  Identities=26%  Similarity=0.421  Sum_probs=28.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      .+||+|||+|.||+.||..+++ |.+|+|+||
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK   33 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH-EYNVIIITK   33 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc-CCCEEEEec
Confidence            4699999999999999999976 999999994

>PRK13748 putative mercuric reductase; Provisional

Probab=98.74  E-value=2.6e-08  Score=95.18  Aligned_cols=62  Identities=18%  Similarity=0.091  Sum_probs=58.4

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI   63 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~   63 (296)
                      .+|+|+|++|++|||+|++|++++|+|+.++++|+.+.+.++|.+++++|||++|.+...+.
T Consensus       486 ~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~  547 (561)
T PRK13748        486 FIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQ  547 (561)
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcccccCCchHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999998876664

>PRK09126 hypothetical protein; Provisional

Probab=98.74  E-value=4.1e-08  Score=89.50  Aligned_cols=33  Identities=33%  Similarity=0.523  Sum_probs=31.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      +.+||+||||||+|+++|..|+++|++|+|+|+
T Consensus         2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~   34 (392)
T PRK09126          2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIER   34 (392)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeC
Confidence            357999999999999999999999999999993

>PRK06126 hypothetical protein; Provisional

Probab=98.73  E-value=1.3e-07  Score=90.06  Aligned_cols=32  Identities=19%  Similarity=0.371  Sum_probs=30.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..+||+||||||+|+++|..|++.|++|+|+|
T Consensus         6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viE   37 (545)
T PRK06126          6 SETPVLIVGGGPVGLALALDLGRRGVDSILVE   37 (545)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEe
Confidence            45799999999999999999999999999999

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.72  E-value=1.9e-07  Score=88.62  Aligned_cols=33  Identities=30%  Similarity=0.494  Sum_probs=29.9

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      +..+||+|||+|.||+.||+.+++. .+|+|+||
T Consensus         6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK   38 (536)
T PRK09077          6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSK   38 (536)
T ss_pred             cccCCEEEECchHHHHHHHHHHHHC-CCEEEEec
Confidence            3567999999999999999999986 89999994

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.72  E-value=2.3e-07  Score=88.81  Aligned_cols=36  Identities=36%  Similarity=0.493  Sum_probs=32.9

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      +..+||+|||+|.+|+.+|+.++++|.+|+|||  +..
T Consensus        10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~ie--k~~   45 (581)
T PRK06134         10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVE--KDP   45 (581)
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEe--cCC
Confidence            356899999999999999999999999999999  555

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.72  E-value=6.2e-08  Score=88.32  Aligned_cols=33  Identities=27%  Similarity=0.402  Sum_probs=31.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ..+||+|||||++|+++|..|++.|++|+|+|+
T Consensus         4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~   36 (391)
T PRK08020          4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEH   36 (391)
T ss_pred             ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcC
Confidence            458999999999999999999999999999993

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=98.72  E-value=1.3e-07  Score=87.22  Aligned_cols=133  Identities=21%  Similarity=0.253  Sum_probs=80.7

Q ss_pred             eeeeeeeccccCCccchhhhccC--cceeeccc-----cCC-CCccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCC
Q psy7665          78 PYLVLAKARFLLPTLECQEVYHD--GRFYDYLD-----NNF-QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTP  149 (296)
Q Consensus        78 p~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~~~-~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~  149 (296)
                      +|.+|+|+|+.+..++.++.+..  ........     ... .....+|+|||||++|+++|..|++.|.+|++++  +.
T Consensus        92 yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~--~~  169 (427)
T TIGR03385        92 YDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIH--RS  169 (427)
T ss_pred             CCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEE--CC
Confidence            89999999987765555443211  11111100     000 0123489999999999999999999999999999  33


Q ss_pred             CCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEE
Q psy7665         150 SQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYF  229 (296)
Q Consensus       150 ~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  229 (296)
                      +      .+...                                  ..+            ..+...+...+++.||+++
T Consensus       170 ~------~~~~~----------------------------------~~~------------~~~~~~~~~~l~~~gV~v~  197 (427)
T TIGR03385       170 E------RILNK----------------------------------LFD------------EEMNQIVEEELKKHEINLR  197 (427)
T ss_pred             c------ccCcc----------------------------------ccC------------HHHHHHHHHHHHHcCCEEE
Confidence            3      11000                                  000            1112223455677799998


Q ss_pred             cceE-EEEeC-CEE-EE-cceeEEEEeCeEEEcCCCCCCCC
Q psy7665         230 NAKA-VFVDK-HRV-KF-AGEERTVSAQNFIIAVGGRPTYP  266 (296)
Q Consensus       230 ~~~~-~~~~~-~~v-~v-~g~~~~~~a~~vV~AtG~~p~~p  266 (296)
                      .+.. ..... ..+ .. ++  .++.+|.||+|+|.+|..+
T Consensus       198 ~~~~v~~i~~~~~~v~~~~g--~~i~~D~vi~a~G~~p~~~  236 (427)
T TIGR03385       198 LNEEVDSIEGEERVKVFTSG--GVYQADMVILATGIKPNSE  236 (427)
T ss_pred             eCCEEEEEecCCCEEEEcCC--CEEEeCEEEECCCccCCHH
Confidence            6543 22222 222 33 55  5699999999999987653

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.72  E-value=5.1e-08  Score=88.85  Aligned_cols=32  Identities=25%  Similarity=0.449  Sum_probs=30.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      .+||+||||||+|+++|..|++.|++|+|+|+
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~   33 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLER   33 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEcc
Confidence            36999999999999999999999999999994

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.72  E-value=9.4e-08  Score=87.19  Aligned_cols=32  Identities=13%  Similarity=0.284  Sum_probs=30.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      .+||+|||||++|+++|..|++.|++|+|+|+
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~   33 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILER   33 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEEC
Confidence            36999999999999999999999999999993

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.70  E-value=2.1e-08  Score=67.59  Aligned_cols=36  Identities=33%  Similarity=0.567  Sum_probs=31.8

Q ss_pred             EECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeee
Q psy7665         120 VIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCV  163 (296)
Q Consensus       120 VIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~  163 (296)
                      |||||++|+++|++|++.|++|+|+|  +.+      .+||.+.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E--~~~------~~GG~~~   36 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFE--KND------RLGGRAR   36 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEE--SSS------SSSGGGC
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEe--cCc------ccCccee
Confidence            89999999999999999999999999  777      7788663

...

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.70  E-value=1.4e-07  Score=89.02  Aligned_cols=32  Identities=25%  Similarity=0.371  Sum_probs=28.6

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      +.++||+|||+|.||+.||+.++  |.+|+|+||
T Consensus         7 ~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK   38 (513)
T PRK07512          7 ILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSP   38 (513)
T ss_pred             CCcCCEEEECchHHHHHHHHHhC--cCCEEEEEC
Confidence            45679999999999999999997  579999993

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.70  E-value=4.5e-08  Score=91.27  Aligned_cols=62  Identities=21%  Similarity=0.240  Sum_probs=58.1

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI   63 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~   63 (296)
                      .+|+++|+++++|||+|++|++|+|+|+.++++|+++++.++|.+++++||+++|.+.....
T Consensus       391 ~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~  452 (461)
T TIGR01350       391 FVKIIADKKTGEILGAHIIGPHATELISEAVLAMELELTVEELAKTIHPHPTLSEAIKEAAL  452 (461)
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCCHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999876654

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.70  E-value=2.2e-07  Score=93.11  Aligned_cols=33  Identities=42%  Similarity=0.583  Sum_probs=31.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ..+||+|||||.+||.||+.+++.|.+|+|+||
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK   44 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEK   44 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCCeEEEEec
Confidence            567999999999999999999999999999994

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.70  E-value=7.9e-07  Score=81.64  Aligned_cols=45  Identities=29%  Similarity=0.443  Sum_probs=35.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC--CCCcccccCCee
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS--QHGTVWGLGGTC  162 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~--~~g~~~~~GG~~  162 (296)
                      +||+|||||.+|+++|++|++.|++|+|+|  +.+  ..|.++..+|.+
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle--~~~~~~~~as~~~~g~~   48 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFD--RHRYAAMETSFANGGQL   48 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEe--CCCCCCcCcccccCCEE
Confidence            499999999999999999999999999999  443  234444445543

>PLN02985 squalene monooxygenase

Probab=98.70  E-value=7.2e-08  Score=90.76  Aligned_cols=35  Identities=23%  Similarity=0.384  Sum_probs=32.2

Q ss_pred             CCccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       112 ~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      .+..+||+|||||++|+++|..|++.|++|+|+|+
T Consensus        40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr   74 (514)
T PLN02985         40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIER   74 (514)
T ss_pred             cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEEC
Confidence            34678999999999999999999999999999994

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.69  E-value=1.1e-06  Score=79.70  Aligned_cols=30  Identities=37%  Similarity=0.506  Sum_probs=29.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +||+|||||.+|+++|++|+++|.+|+|+|
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e   30 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLE   30 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEe
Confidence            599999999999999999999999999999

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.69  E-value=1.5e-07  Score=85.93  Aligned_cols=31  Identities=35%  Similarity=0.560  Sum_probs=29.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..||+|||||++|+++|..|++.|.+|+|+|
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~E   34 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLE   34 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEe
Confidence            3589999999999999999999999999999

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.69  E-value=3e-08  Score=90.88  Aligned_cols=32  Identities=28%  Similarity=0.311  Sum_probs=30.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      .+||+|||||++|+++|+.|+++|++|+|+|+
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~   33 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLEVLLLDG   33 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCEEEEEcC
Confidence            36999999999999999999999999999993

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.69  E-value=9.5e-08  Score=86.97  Aligned_cols=32  Identities=34%  Similarity=0.557  Sum_probs=30.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      .+||+||||||+|+++|..|++.|++|+|+|+
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~   34 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEG   34 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEcC
Confidence            36999999999999999999999999999993

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.68  E-value=6.5e-08  Score=87.75  Aligned_cols=30  Identities=23%  Similarity=0.401  Sum_probs=29.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +||+||||||+|+++|..|++.|++|+|+|
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E   31 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFE   31 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEec
Confidence            589999999999999999999999999999

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=98.68  E-value=7.2e-08  Score=92.08  Aligned_cols=41  Identities=37%  Similarity=0.605  Sum_probs=36.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      .+.+|+|||+||+|+.+|..|++.|++|+|+|  +.+      .+||.+
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e--~~~------~~GG~l  176 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFE--AGP------KLGGMM  176 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEe--cCC------CCCCee
Confidence            45699999999999999999999999999999  666      677744

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.68  E-value=4.5e-07  Score=86.40  Aligned_cols=33  Identities=27%  Similarity=0.347  Sum_probs=31.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ..+||+||||||+|+++|..|++.|.+|+|+|+
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~   54 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDD   54 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeC
Confidence            567999999999999999999999999999993

>PRK12839 hypothetical protein; Provisional

Probab=98.67  E-value=2.8e-07  Score=87.87  Aligned_cols=37  Identities=43%  Similarity=0.614  Sum_probs=33.5

Q ss_pred             CCccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       112 ~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      .+..+||+|||+|.+|+.+|+.++++|.+|+|+|  +..
T Consensus         5 ~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~ie--k~~   41 (572)
T PRK12839          5 MTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVE--KAS   41 (572)
T ss_pred             cCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEe--cCC
Confidence            3457899999999999999999999999999999  555

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.67  E-value=1e-06  Score=82.11  Aligned_cols=33  Identities=24%  Similarity=0.449  Sum_probs=30.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC--CCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASM--NKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~  146 (296)
                      ..+||+|||||.+|+++|++|+++  |.+|+|+|+
T Consensus        23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~   57 (460)
T TIGR03329        23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEA   57 (460)
T ss_pred             ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            567999999999999999999998  899999993

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.67  E-value=8.4e-08  Score=87.28  Aligned_cols=32  Identities=34%  Similarity=0.475  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      ||+|||||++||++|..|++.|.+|+|+|  +.+
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE--~rp   33 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYE--MRP   33 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEe--ccc
Confidence            79999999999999999999999999999  555

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.67  E-value=6.8e-08  Score=87.67  Aligned_cols=30  Identities=33%  Similarity=0.561  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ||+|||||++|+++|..|+++|.+|+|+|+
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er   30 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEA   30 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeC
Confidence            799999999999999999999999999993

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.66  E-value=3.3e-07  Score=83.61  Aligned_cols=33  Identities=27%  Similarity=0.465  Sum_probs=30.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC---CCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASM---NKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~---G~~V~iiE~  146 (296)
                      ..+||+||||||+|+++|+.|+++   |.+|+|+|+
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~   37 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEA   37 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeC
Confidence            347999999999999999999998   999999993

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.66  E-value=3.4e-07  Score=87.87  Aligned_cols=29  Identities=34%  Similarity=0.538  Sum_probs=27.8

Q ss_pred             EEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         118 LCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       118 VvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      |+|||+|.||+.||+.+++.|.+|+|+||
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK   29 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSY   29 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEe
Confidence            69999999999999999999999999993

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.65  E-value=2.2e-07  Score=92.06  Aligned_cols=157  Identities=12%  Similarity=0.132  Sum_probs=95.0

Q ss_pred             CChHHHHHHHHHhhcCC---CCc--ee-----eccceeeeeeeccccCCccchhhhccCc-----ceeeccc--cCCCCc
Q psy7665          52 PTCAEAISLSWIKGYNI---EPE--VI-----KLHTPYLVLAKARFLLPTLECQEVYHDG-----RFYDYLD--NNFQTY  114 (296)
Q Consensus        52 pt~~e~l~v~~~~~~~~---~~~--~~-----~~~~p~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~  114 (296)
                      +.+.+..++.+++++.+   +++  .+     ..+.+|.+|+|+|+.+..++.++.....     .+.+...  .. ...
T Consensus        66 ~~~~~~~gI~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~-~~~  144 (847)
T PRK14989         66 EGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEAC-ARR  144 (847)
T ss_pred             HHHHHhCCCEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHH-Hhc
Confidence            33444556666665433   222  11     2467899999999877665555433221     1111111  00 012


Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK  194 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~  194 (296)
                      ...++|||||+.|+++|..|++.|.+|+|+|  +.+      .                                     
T Consensus       145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe--~~~------~-------------------------------------  179 (847)
T PRK14989        145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIE--FAP------M-------------------------------------  179 (847)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEe--ccc------c-------------------------------------
Confidence            3479999999999999999999999999999  332      0                                     


Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEE-EEe--C--C--EEEE-cceeEEEEeCeEEEcCCCCCCC
Q psy7665         195 KSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAV-FVD--K--H--RVKF-AGEERTVSAQNFIIAVGGRPTY  265 (296)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~--~--~--~v~v-~g~~~~~~a~~vV~AtG~~p~~  265 (296)
                        +    +...++   ......+...+++.||+++.+... .+.  .  .  .+.. +|  ..+.+|.||+|+|.+|+.
T Consensus       180 --l----l~~~ld---~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG--~~i~~D~Vv~A~G~rPn~  247 (847)
T PRK14989        180 --L----MAEQLD---QMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADG--SELEVDFIVFSTGIRPQD  247 (847)
T ss_pred             --c----hhhhcC---HHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCC--CEEEcCEEEECCCcccCc
Confidence              0    000011   111233456678889999877532 221  1  1  2333 55  579999999999998875

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.65  E-value=2.9e-07  Score=83.82  Aligned_cols=32  Identities=41%  Similarity=0.575  Sum_probs=30.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..+||+|||||++|+++|..|++.|.+|+|+|
T Consensus         6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE   37 (388)
T PRK07494          6 EHTDIAVIGGGPAGLAAAIALARAGASVALVA   37 (388)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCCeEEEEe
Confidence            45799999999999999999999999999999

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.64  E-value=3.2e-07  Score=94.19  Aligned_cols=36  Identities=39%  Similarity=0.531  Sum_probs=33.0

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      +.++||||||+|.||+.||+.+++.|.+|+|+|  +..
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlE--K~~  442 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLE--KEA  442 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEE--ccC
Confidence            356899999999999999999999999999999  555

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.64  E-value=1.4e-06  Score=79.98  Aligned_cols=30  Identities=27%  Similarity=0.396  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ||+|||||.+|+++|++|++.|.+|+|+|+
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~   31 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDR   31 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            799999999999999999999999999993

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.64  E-value=1.5e-07  Score=85.44  Aligned_cols=30  Identities=33%  Similarity=0.574  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-CcEEEEec
Q psy7665         117 DLCVIGGGSGGISAAKEAASMN-KKVALFDF  146 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE~  146 (296)
                      ||+||||||+|+++|..|++.| ++|+|+|+
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~   31 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEA   31 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeC
Confidence            7999999999999999999999 99999993

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.64  E-value=7.5e-07  Score=80.68  Aligned_cols=32  Identities=38%  Similarity=0.380  Sum_probs=30.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..+||+|||||.+|+++|++|++.|++|+|+|
T Consensus         2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie   33 (376)
T PRK11259          2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLD   33 (376)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEe
Confidence            35799999999999999999999999999999

>PRK07045 putative monooxygenase; Reviewed

Probab=98.63  E-value=8e-08  Score=87.54  Aligned_cols=33  Identities=18%  Similarity=0.299  Sum_probs=30.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ..+||+||||||+|+++|..|+++|++|+|+|+
T Consensus         4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~   36 (388)
T PRK07045          4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVER   36 (388)
T ss_pred             ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeC
Confidence            457999999999999999999999999999993

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.62  E-value=6e-07  Score=84.87  Aligned_cols=49  Identities=43%  Similarity=0.607  Sum_probs=38.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      ..+||+|||||.|||.||..++++|.+|+|+||....+-.+.+..||.+
T Consensus         5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~a~gG~~   53 (562)
T COG1053           5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAAQGGIN   53 (562)
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhhhccccc
Confidence            5689999999999999999999999999999965444323333335554

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.61  E-value=3.6e-07  Score=72.35  Aligned_cols=129  Identities=19%  Similarity=0.258  Sum_probs=66.7

Q ss_pred             EEECCChHHHHHHHHHHhC-----CCcEEEEeccCCCCCCcccccCCeeeccC------CCchhHHHH-hhhh-HHHhhc
Q psy7665         119 CVIGGGSGGISAAKEAASM-----NKKVALFDFVTPSQHGTVWGLGGTCVNVG------CIPKKLFHR-ASLL-NEEATT  185 (296)
Q Consensus       119 vVIGgG~aG~~aA~~l~~~-----G~~V~iiE~~~~~~~g~~~~~GG~~~~~~------~~p~~~~~~-~~~~-~~~~~~  185 (296)
                      +|||||++|++++.+|.+.     ..+|+|||  +.+ .    ..|+.|....      ..|...+.. .... .....|
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd--~~~-~----G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~W   73 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFD--PSP-F----GAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDW   73 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEc--CCC-c----cccccCCCCCChHHhhcccccccccccccCCCCHHHH
Confidence            5999999999999999987     46899999  432 1    1133442211      011111111 0000 111111


Q ss_pred             ccccC------ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEE--EcceEEEE----eCCEEEE-cceeEEEEe
Q psy7665         186 SDNFG------FHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDY--FNAKAVFV----DKHRVKF-AGEERTVSA  252 (296)
Q Consensus       186 ~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~----~~~~v~v-~g~~~~~~a  252 (296)
                      +..-+      +.....+....+..|++...+.+.    ..+ ..++++  +..++..+    +.+.+.+ +|  ..+.|
T Consensus        74 l~~~~~~~~~~~~~~~f~pR~~~G~YL~~~~~~~~----~~~-~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g--~~~~~  146 (156)
T PF13454_consen   74 LRANGADEAEEIDPDDFPPRALFGEYLRDRFDRLL----ARL-PAGITVRHVRAEVVDIRRDDDGYRVVTADG--QSIRA  146 (156)
T ss_pred             HHhcCcccccccccccCCCHHHHHHHHHHHHHHHH----Hhh-cCCcEEEEEeeEEEEEEEcCCcEEEEECCC--CEEEe
Confidence            11111      121225555666666666555543    333 334444  44444322    2233444 55  67899


Q ss_pred             CeEEEcCCC
Q psy7665         253 QNFIIAVGG  261 (296)
Q Consensus       253 ~~vV~AtG~  261 (296)
                      |.||+|||.
T Consensus       147 d~VvLa~Gh  155 (156)
T PF13454_consen  147 DAVVLATGH  155 (156)
T ss_pred             CEEEECCCC
Confidence            999999995

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.61  E-value=1.4e-06  Score=82.33  Aligned_cols=35  Identities=34%  Similarity=0.520  Sum_probs=31.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQ  151 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~  151 (296)
                      ..+||||||+| +|++||+++++.|.+|+|||  +...
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlE--k~~~   40 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVE--ATDK   40 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCCCcEEEEe--cCCC
Confidence            46799999999 99999999999999999999  5553

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.60  E-value=5.7e-07  Score=81.08  Aligned_cols=166  Identities=18%  Similarity=0.187  Sum_probs=104.7

Q ss_pred             eccceeeeeeeccccCCccchhhhccC-cce---eec------c-------ccCCCC-ccccEEEECCChHHHHHHHHHH
Q psy7665          74 KLHTPYLVLAKARFLLPTLECQEVYHD-GRF---YDY------L-------DNNFQT-YDYDLCVIGGGSGGISAAKEAA  135 (296)
Q Consensus        74 ~~~~p~~v~~~~~~~~~~~~~~~~~~~-~~~---~~~------~-------~~~~~~-~~~dVvVIGgG~aG~~aA~~l~  135 (296)
                      ..+.+|..+++.|+......+++.... ..+   ++.      +       +....+ ..-+++|+|||+.|.+.|-+|+
T Consensus        96 ~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~  175 (405)
T COG1252          96 GEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELA  175 (405)
T ss_pred             ccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHH
Confidence            357889999999988777766653321 111   111      1       111111 2247999999999999999997


Q ss_pred             hCC-------------CcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHH
Q psy7665         136 SMN-------------KKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTL  202 (296)
Q Consensus       136 ~~G-------------~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  202 (296)
                      ..-             .+|+++|  +.+      .+         .|                               .+
T Consensus       176 ~~~~~l~~~~~~~~~~~~V~LVe--a~p------~I---------Lp-------------------------------~~  207 (405)
T COG1252         176 ERLHRLLKKFRVDPSELRVILVE--AGP------RI---------LP-------------------------------MF  207 (405)
T ss_pred             HHHHHHhhhhcCCccccEEEEEc--cCc------hh---------cc-------------------------------CC
Confidence            642             2899999  443      00         00                               01


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCcEEEcceE-EEEeCCEEEE-cceeEEEEeCeEEEcCCCCCCCC--CCCCCc-----c
Q psy7665         203 VDNVQKYIRNLNNNYEKELEKNKIDYFNAKA-VFVDKHRVKF-AGEERTVSAQNFIIAVGGRPTYP--DIPGAR-----L  273 (296)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p--~i~G~~-----~  273 (296)
                      .       .++.......|++.||+++.++. ...++..|++ +++ ..+.++.+|.|+|.++...  ++-|.+     .
T Consensus       208 ~-------~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~v~~~~g~-~~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Gr  279 (405)
T COG1252         208 P-------PKLSKYAERALEKLGVEVLLGTPVTEVTPDGVTLKDGE-EEIPADTVVWAAGVRASPLLKDLSGLETDRRGR  279 (405)
T ss_pred             C-------HHHHHHHHHHHHHCCCEEEcCCceEEECCCcEEEccCC-eeEecCEEEEcCCCcCChhhhhcChhhhccCCC
Confidence            1       12222344567888999988765 4477888888 442 2699999999999765432  321222     2


Q ss_pred             ceeecccCCCCCCcEEEeeccC
Q psy7665         274 LRTLSLLSGVDPPTLIFLEHIS  295 (296)
Q Consensus       274 ~~~~s~~~~~~~~~~~~~~~~~  295 (296)
                      -+....++....++..++++.+
T Consensus       280 l~V~~~L~~~~~~~IFa~GD~A  301 (405)
T COG1252         280 LVVNPTLQVPGHPDIFAAGDCA  301 (405)
T ss_pred             EEeCCCcccCCCCCeEEEeccc
Confidence            3555678888888888887653

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.60  E-value=8.9e-07  Score=84.74  Aligned_cols=35  Identities=34%  Similarity=0.581  Sum_probs=32.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      .++||||||+|++|++||++++++|.+|+|+|  +..
T Consensus         8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llE--k~~   42 (574)
T PRK12842          8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLE--KEP   42 (574)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEe--cCC
Confidence            56899999999999999999999999999999  555

>PRK06185 hypothetical protein; Provisional

Probab=98.60  E-value=2e-07  Score=85.45  Aligned_cols=33  Identities=24%  Similarity=0.464  Sum_probs=31.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ..+||+|||||++|+++|+.|++.|.+|+|+|+
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~   37 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEK   37 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence            567999999999999999999999999999993

>PRK07236 hypothetical protein; Provisional

Probab=98.59  E-value=5.2e-07  Score=82.15  Aligned_cols=32  Identities=31%  Similarity=0.351  Sum_probs=30.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ..||+|||||++|+++|..|++.|.+|+|+|+
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~   37 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFER   37 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence            46999999999999999999999999999993

>PRK10262 thioredoxin reductase; Provisional

Probab=98.59  E-value=1e-06  Score=78.24  Aligned_cols=134  Identities=15%  Similarity=0.158  Sum_probs=82.9

Q ss_pred             ccceeeeeeeccccCCccchhhhcc--Ccce--eeccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665          75 LHTPYLVLAKARFLLPTLECQEVYH--DGRF--YDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus        75 ~~~p~~v~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      .+.+|.+|+|+|..+..++.++.+.  ....  ....... ...+.+|+|||+|..|+++|..|++.|.+|++++  +.+
T Consensus       103 ~~~~d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~~~~-~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~--~~~  179 (321)
T PRK10262        103 EYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGF-FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIH--RRD  179 (321)
T ss_pred             EEEECEEEECCCCCCCCCCCCCHHHcCCCcEEEeecCCHH-HcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEE--ECC
Confidence            4678999999998765544443221  1111  1111111 1234589999999999999999999999999999  332


Q ss_pred             CCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEc
Q psy7665         151 QHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFN  230 (296)
Q Consensus       151 ~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  230 (296)
                            .+                                       ...          ..+...+.+.+++.+|+++.
T Consensus       180 ------~~---------------------------------------~~~----------~~~~~~~~~~l~~~gV~i~~  204 (321)
T PRK10262        180 ------GF---------------------------------------RAE----------KILIKRLMDKVENGNIILHT  204 (321)
T ss_pred             ------cc---------------------------------------CCC----------HHHHHHHHhhccCCCeEEEe
Confidence                  00                                       000          01122334556777999887


Q ss_pred             ceE-EEEeCC-----EEEE-c----ceeEEEEeCeEEEcCCCCCCCC
Q psy7665         231 AKA-VFVDKH-----RVKF-A----GEERTVSAQNFIIAVGGRPTYP  266 (296)
Q Consensus       231 ~~~-~~~~~~-----~v~v-~----g~~~~~~a~~vV~AtG~~p~~p  266 (296)
                      +.. ......     .+++ +    +...++.+|.||+|+|.+|+..
T Consensus       205 ~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~  251 (321)
T PRK10262        205 NRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTA  251 (321)
T ss_pred             CCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChh
Confidence            543 222221     2444 2    2235799999999999988654

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.59  E-value=2.3e-07  Score=85.02  Aligned_cols=32  Identities=25%  Similarity=0.477  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      .+||+||||||+|+++|..|++.|++|+|+|+
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~   35 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEG   35 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCEEEEEcC
Confidence            47999999999999999999999999999993

>PRK09897 hypothetical protein; Provisional

Probab=98.58  E-value=1.3e-06  Score=82.21  Aligned_cols=37  Identities=16%  Similarity=0.409  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC--CcEEEEeccCCCCCCc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMN--KKVALFDFVTPSQHGT  154 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE~~~~~~~g~  154 (296)
                      ++|+||||||+|+++|.+|.+.+  .+|+|||  +...+|.
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfE--p~~~~G~   40 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFE--QADEAGV   40 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEe--cCCCCCc
Confidence            37999999999999999998865  5899999  6564443

>PRK06753 hypothetical protein; Provisional

Probab=98.58  E-value=1.7e-07  Score=84.94  Aligned_cols=30  Identities=30%  Similarity=0.591  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ||+|||||++|+++|..|++.|++|+|+|+
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~   31 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEK   31 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence            799999999999999999999999999993

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.57  E-value=2.4e-07  Score=83.97  Aligned_cols=30  Identities=33%  Similarity=0.419  Sum_probs=29.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .||+|||||++||++|+.|+++|++|+|+|
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE   32 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYE   32 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEE
Confidence            489999999999999999999999999999

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.57  E-value=2.7e-07  Score=85.15  Aligned_cols=91  Identities=24%  Similarity=0.348  Sum_probs=63.9

Q ss_pred             cEEEECCChHHHHHHHHHHh--------------CCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHH
Q psy7665         117 DLCVIGGGSGGISAAKEAAS--------------MNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEE  182 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~--------------~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~  182 (296)
                      .|+|||||++|++.|..|+.              .+.+|++++  +.+      .+..                      
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~--~~~------~ll~----------------------  224 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLE--AGS------EVLG----------------------  224 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEc--CCC------cccc----------------------
Confidence            79999999999999999875              478999999  433      1000                      


Q ss_pred             hhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceE-EEEeCCEEEE-cceeEEEEeCeEEEcCC
Q psy7665         183 ATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA-VFVDKHRVKF-AGEERTVSAQNFIIAVG  260 (296)
Q Consensus       183 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~v~v-~g~~~~~~a~~vV~AtG  260 (296)
                                   .     +    .   ..+...+.+.+++.||+++.++. .......+.+ +|  .++.+|.+|+|+|
T Consensus       225 -------------~-----~----~---~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~~v~~~~g--~~i~~d~vi~~~G  277 (424)
T PTZ00318        225 -------------S-----F----D---QALRKYGQRRLRRLGVDIRTKTAVKEVLDKEVVLKDG--EVIPTGLVVWSTG  277 (424)
T ss_pred             -------------c-----C----C---HHHHHHHHHHHHHCCCEEEeCCeEEEEeCCEEEECCC--CEEEccEEEEccC
Confidence                         0     0    0   11223345667788999986543 3455566767 55  5799999999999


Q ss_pred             CCCC
Q psy7665         261 GRPT  264 (296)
Q Consensus       261 ~~p~  264 (296)
                      .+|.
T Consensus       278 ~~~~  281 (424)
T PTZ00318        278 VGPG  281 (424)
T ss_pred             CCCc
Confidence            8775

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.56  E-value=7.4e-08  Score=90.24  Aligned_cols=41  Identities=34%  Similarity=0.537  Sum_probs=36.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      ..+||||||||++||.||.+|+++|++|+|+|  +++      .+||.+
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE--~~~------~~GG~a   42 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLE--KND------RVGGRA   42 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHhCCCEEEEEE--ecC------CCCcce
Confidence            35799999999999999999999999999999  777      777755

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.56  E-value=6.3e-07  Score=80.00  Aligned_cols=163  Identities=18%  Similarity=0.193  Sum_probs=68.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-CcEEEEeccCCCCCCcccccCCee----eccC--------CCch---hHHHHhhh
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMN-KKVALFDFVTPSQHGTVWGLGGTC----VNVG--------CIPK---KLFHRASL  178 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE~~~~~~~g~~~~~GG~~----~~~~--------~~p~---~~~~~~~~  178 (296)
                      .+|++.||.||++++.|..|.+.+ .+++.+|  +.+  .-.|..|-..    +...        ..|.   .++.+...
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e--~~~--~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~   77 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLE--RRP--SFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHE   77 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEE--S-S--S--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHH
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEe--cCC--CCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHH
Confidence            479999999999999999999887 8999999  433  2223332211    1110        0111   11111110


Q ss_pred             hHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEE---EE-eC----CEEEE---ccee
Q psy7665         179 LNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAV---FV-DK----HRVKF---AGEE  247 (296)
Q Consensus       179 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~-~~----~~v~v---~g~~  247 (296)
                      ......++.. +..   .+...++.+|++-.++++        .. .+. +..++.   .. +.    +.|.+   +|..
T Consensus        78 ~~rl~~f~~~-~~~---~p~R~ef~dYl~Wva~~~--------~~-~v~-~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~  143 (341)
T PF13434_consen   78 HGRLYEFYNR-GYF---FPSRREFNDYLRWVAEQL--------DN-QVR-YGSEVTSIEPDDDGDEDLFRVTTRDSDGDG  143 (341)
T ss_dssp             TT-HHHHHHH---S---S-BHHHHHHHHHHHHCCG--------TT-TEE-ESEEEEEEEEEEETTEEEEEEEEEETTS-E
T ss_pred             cCChhhhhhc-CCC---CCCHHHHHHHHHHHHHhC--------CC-ceE-ECCEEEEEEEecCCCccEEEEEEeecCCCe
Confidence            0000000000 000   233344444443333333        11 122 222221   11 22    45555   3556


Q ss_pred             EEEEeCeEEEcCCCCCCCCCCCC-C--ccceeecc------cCCCCCCcEEEeeccC
Q psy7665         248 RTVSAQNFIIAVGGRPTYPDIPG-A--RLLRTLSL------LSGVDPPTLIFLEHIS  295 (296)
Q Consensus       248 ~~~~a~~vV~AtG~~p~~p~i~G-~--~~~~~~s~------~~~~~~~~~~~~~~~~  295 (296)
                      ..+.|+.||+|+|..|.+|+... .  ...+++|.      -.....++.+||++++
T Consensus       144 ~~~~ar~vVla~G~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQ  200 (341)
T PF13434_consen  144 ETYRARNVVLATGGQPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQ  200 (341)
T ss_dssp             EEEEESEEEE----EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSH
T ss_pred             eEEEeCeEEECcCCCCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcH
Confidence            88999999999999999997432 2  25566652      1245666788888765

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=98.56  E-value=1.2e-06  Score=83.47  Aligned_cols=33  Identities=42%  Similarity=0.610  Sum_probs=31.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      .++||||||+|.+|+.||+.+++.|.+|+|+|+
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK   35 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQ   35 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence            467999999999999999999999999999994

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.56  E-value=3.4e-07  Score=87.60  Aligned_cols=35  Identities=29%  Similarity=0.507  Sum_probs=32.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      ..+||||||+|.+|+.||+.++++|.+|+|+|  +..
T Consensus        10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlE--k~~   44 (584)
T PRK12835         10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVE--KSA   44 (584)
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEE--cCC
Confidence            46799999999999999999999999999999  555

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.55  E-value=1.8e-06  Score=82.68  Aligned_cols=35  Identities=40%  Similarity=0.541  Sum_probs=32.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      .++||+|||+|++|+.+|+.++++|.+|+|+|  +..
T Consensus        15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~e--k~~   49 (578)
T PRK12843         15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVE--RTE   49 (578)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEe--cCC
Confidence            46799999999999999999999999999999  555

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.55  E-value=1.7e-06  Score=60.34  Aligned_cols=32  Identities=38%  Similarity=0.584  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      +|+|||||+.|+++|..|++.|.+|++++  +.+
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~--~~~   32 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIE--RSD   32 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEE--SSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEe--ccc
Confidence            48999999999999999999999999999  554

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.55  E-value=2.2e-06  Score=74.96  Aligned_cols=70  Identities=20%  Similarity=0.153  Sum_probs=47.4

Q ss_pred             ccceeeeeeeccccCCccchhhhcc--Ccce--eeccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665          75 LHTPYLVLAKARFLLPTLECQEVYH--DGRF--YDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus        75 ~~~p~~v~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+.+|.+|+++|..+..+..++...  ....  ....... ...+.+|+|||+|++|+++|..+++.+.+|++++
T Consensus        98 ~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~-~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~  171 (300)
T TIGR01292        98 EYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCDGP-FFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVH  171 (300)
T ss_pred             EEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecChh-hcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEE
Confidence            4678999999998655443333221  0111  1111111 1134589999999999999999999999999999

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=98.54  E-value=1.2e-06  Score=83.86  Aligned_cols=30  Identities=43%  Similarity=0.654  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHH----hCCCcEEEEec
Q psy7665         117 DLCVIGGGSGGISAAKEAA----SMNKKVALFDF  146 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~----~~G~~V~iiE~  146 (296)
                      ||+|||||.|||.||+.++    +.|.+|+|+||
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK   34 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEK   34 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEc
Confidence            7999999999999999998    67999999994

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>KOG2820|consensus

Probab=98.54  E-value=2.4e-06  Score=73.88  Aligned_cols=38  Identities=26%  Similarity=0.340  Sum_probs=33.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHG  153 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g  153 (296)
                      ...||+|||||.-|+++|++|+++|.+++++|  +.+.+.
T Consensus         6 ~~~~viiVGAGVfG~stAyeLaK~g~killLe--qf~~ph   43 (399)
T KOG2820|consen    6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLE--QFPLPH   43 (399)
T ss_pred             cceeEEEEcccccchHHHHHHHhcCCeEEEEe--ccCCCc
Confidence            45799999999999999999999999999999  444333

>KOG0405|consensus

Probab=98.54  E-value=7.6e-08  Score=83.18  Aligned_cols=57  Identities=32%  Similarity=0.585  Sum_probs=55.0

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI   58 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l   58 (296)
                      .||+|....+.+++|+|++|+.+.|++|++++|++++.+|.++..++..|||.+|.+
T Consensus       412 ~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmGaTKadFD~tVaIHPTSAEEl  468 (478)
T KOG0405|consen  412 LMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMGATKADFDSTVAIHPTSAEEL  468 (478)
T ss_pred             EEEEEEecCCCcEEEEEEecCCcHHHHhhhhhheecCcchhhhccceeecCCCHHHh
Confidence            489999888999999999999999999999999999999999999999999999987

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.53  E-value=9.2e-07  Score=80.94  Aligned_cols=31  Identities=29%  Similarity=0.328  Sum_probs=29.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      .+|+|||||++|+++|..|++.|++|+|+|+
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~   33 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEK   33 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence            3899999999999999999999999999993

>PRK05868 hypothetical protein; Validated

Probab=98.52  E-value=3.5e-07  Score=82.91  Aligned_cols=30  Identities=20%  Similarity=0.208  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ||+|||||++|+++|..|++.|++|+|+|+
T Consensus         3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~   32 (372)
T PRK05868          3 TVVVSGASVAGTAAAYWLGRHGYSVTMVER   32 (372)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Confidence            899999999999999999999999999993

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.51  E-value=3.3e-06  Score=82.27  Aligned_cols=32  Identities=31%  Similarity=0.467  Sum_probs=30.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      .+||+|||||.+|+++|++|+++|.+|+|+|+
T Consensus       260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~  291 (662)
T PRK01747        260 ARDAAIIGGGIAGAALALALARRGWQVTLYEA  291 (662)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCeEEEEec
Confidence            36999999999999999999999999999993

>KOG1336|consensus

Probab=98.51  E-value=2.7e-07  Score=83.08  Aligned_cols=110  Identities=21%  Similarity=0.362  Sum_probs=71.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC--cEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK--KVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..++|||+|++|..|+.++++.|.  +.+++-  +..                ..|                        
T Consensus        75 r~fvivGgG~~g~vaie~~r~~g~~~ri~l~~--~~~----------------~~p------------------------  112 (478)
T KOG1336|consen   75 RHFVIVGGGPGGAVAIETLRQVGFTERIALVK--REY----------------LLP------------------------  112 (478)
T ss_pred             ceEEEEcCCchhhhhHhhHHhhCCCcceEEEe--ccc----------------cCc------------------------
Confidence            479999999999999999999985  455554  111                011                        


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEE-E--eCCEEEE-cceeEEEEeCeEEEcCCCCCCCCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVF-V--DKHRVKF-AGEERTVSAQNFIIAVGGRPTYPDIP  269 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~--~~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~i~  269 (296)
                         .+...+...+......+.....+.+++.+++++.+.... .  ..+++.. +|  +.++++++++|||+.|+.|++|
T Consensus       113 ---ydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~D~~~K~l~~~~G--e~~kys~LilATGs~~~~l~~p  187 (478)
T KOG1336|consen  113 ---YDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKADLASKTLVLGNG--ETLKYSKLIIATGSSAKTLDIP  187 (478)
T ss_pred             ---ccchhcccceeeccccccccChhhHhhcCceEEEcceeEEeeccccEEEeCCC--ceeecceEEEeecCccccCCCC
Confidence               011111111111112222223345677799987765432 2  3456666 67  7899999999999999999999


Q ss_pred             CCc
Q psy7665         270 GAR  272 (296)
Q Consensus       270 G~~  272 (296)
                      |.+
T Consensus       188 G~~  190 (478)
T KOG1336|consen  188 GVE  190 (478)
T ss_pred             Ccc
Confidence            987

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.50  E-value=2.1e-07  Score=86.15  Aligned_cols=31  Identities=32%  Similarity=0.632  Sum_probs=29.4

Q ss_pred             ccEEEECCChHHHHHHHHHHh----CCCcEEEEec
Q psy7665         116 YDLCVIGGGSGGISAAKEAAS----MNKKVALFDF  146 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~----~G~~V~iiE~  146 (296)
                      |||+||||||+|+++|+.|++    .|.+|+|+|+
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~   35 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDA   35 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeC
Confidence            699999999999999999998    8999999993

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.49  E-value=2.4e-06  Score=77.60  Aligned_cols=33  Identities=33%  Similarity=0.490  Sum_probs=31.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ..+||+|||||.+|+++|++|+++|.+|+++|+
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~   35 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEA   35 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCCEEEEEec
Confidence            457999999999999999999999999999993

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.49  E-value=8.3e-07  Score=82.46  Aligned_cols=69  Identities=12%  Similarity=0.015  Sum_probs=46.0

Q ss_pred             ceeeeeeeccc--cCCccchhhhcc--Cccee-eccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665          77 TPYLVLAKARF--LLPTLECQEVYH--DGRFY-DYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus        77 ~p~~v~~~~~~--~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..|+||+++|+  .|..+..++...  ...+. .....+....+.+|+|||+|.+|+..|..|++.+.+|+++.
T Consensus       161 ~~d~VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~  234 (461)
T PLN02172        161 IFDAVVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIAS  234 (461)
T ss_pred             EcCEEEEeccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEE
Confidence            46999999994  333444443321  11010 11111112245689999999999999999999999999999

>KOG1800|consensus

Probab=98.47  E-value=5.2e-07  Score=78.97  Aligned_cols=33  Identities=24%  Similarity=0.556  Sum_probs=29.5

Q ss_pred             ccEEEECCChHHHHHHHHHHhC--CCcEEEEeccCCC
Q psy7665         116 YDLCVIGGGSGGISAAKEAASM--NKKVALFDFVTPS  150 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~~~~~  150 (296)
                      ..|+|||+||||+.+|..|.++  +.+|.|+|  +.+
T Consensus        21 p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~E--k~P   55 (468)
T KOG1800|consen   21 PRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFE--KLP   55 (468)
T ss_pred             ceEEEECCCchHHHHHHHHHhcCCCCeeEeee--cCC
Confidence            4899999999999999999985  68999999  555

>PRK06996 hypothetical protein; Provisional

Probab=98.47  E-value=5.6e-07  Score=82.31  Aligned_cols=34  Identities=29%  Similarity=0.488  Sum_probs=30.3

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCC----CcEEEEec
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASMN----KKVALFDF  146 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~G----~~V~iiE~  146 (296)
                      ...+||+||||||+|+++|..|++.|    .+|+|+|+
T Consensus         9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~   46 (398)
T PRK06996          9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDA   46 (398)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecC
Confidence            35679999999999999999999987    47999993

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=98.47  E-value=7.2e-07  Score=82.49  Aligned_cols=27  Identities=44%  Similarity=0.630  Sum_probs=26.0

Q ss_pred             EECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         120 VIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       120 VIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      |||+|.+|+.||+++++.|.+|+|+||
T Consensus         1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK   27 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARRAGASVLLLEA   27 (432)
T ss_pred             CCcccHHHHHHHHHHHhCCCcEEEEeC
Confidence            799999999999999999999999994

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.46  E-value=7.4e-07  Score=80.48  Aligned_cols=132  Identities=17%  Similarity=0.141  Sum_probs=80.7

Q ss_pred             ccceeeeeeeccccCCccchhhhccC-cce------ee---ccccCC--CCccccEEEECCChHHHHHHHHHHh----CC
Q psy7665          75 LHTPYLVLAKARFLLPTLECQEVYHD-GRF------YD---YLDNNF--QTYDYDLCVIGGGSGGISAAKEAAS----MN  138 (296)
Q Consensus        75 ~~~p~~v~~~~~~~~~~~~~~~~~~~-~~~------~~---~~~~~~--~~~~~dVvVIGgG~aG~~aA~~l~~----~G  138 (296)
                      .+.+|.+|+|+|+.+..+..++.... ...      ..   .+....  .....+|+|||||++|+++|..|++    +|
T Consensus        93 ~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g  172 (364)
T TIGR03169        93 PLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRG  172 (364)
T ss_pred             cccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcC
Confidence            47799999999987765554432211 000      00   011100  0123489999999999999999975    34


Q ss_pred             --CcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHH
Q psy7665         139 --KKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNN  216 (296)
Q Consensus       139 --~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (296)
                        .+|+|+.  ...       +..                                   .     +.       ..+...
T Consensus       173 ~~~~V~li~--~~~-------~l~-----------------------------------~-----~~-------~~~~~~  196 (364)
T TIGR03169       173 LRGQVTLIA--GAS-------LLP-----------------------------------G-----FP-------AKVRRL  196 (364)
T ss_pred             CCceEEEEe--CCc-------ccc-----------------------------------c-----CC-------HHHHHH
Confidence              4798886  221       000                                   0     00       111223


Q ss_pred             HHHHHHHCCcEEEcceE-EEEeCCEEEE-cceeEEEEeCeEEEcCCCCCC
Q psy7665         217 YEKELEKNKIDYFNAKA-VFVDKHRVKF-AGEERTVSAQNFIIAVGGRPT  264 (296)
Q Consensus       217 ~~~~~~~~~v~~~~~~~-~~~~~~~v~v-~g~~~~~~a~~vV~AtG~~p~  264 (296)
                      +...+++.+|+++.+.. ...+...+.+ ++  .++.+|.||+|+|.+|.
T Consensus       197 ~~~~l~~~gV~v~~~~~v~~i~~~~v~~~~g--~~i~~D~vi~a~G~~p~  244 (364)
T TIGR03169       197 VLRLLARRGIEVHEGAPVTRGPDGALILADG--RTLPADAILWATGARAP  244 (364)
T ss_pred             HHHHHHHCCCEEEeCCeeEEEcCCeEEeCCC--CEEecCEEEEccCCChh
Confidence            44566778999987643 3344456666 55  57999999999998875

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.46  E-value=1.1e-05  Score=76.71  Aligned_cols=32  Identities=28%  Similarity=0.529  Sum_probs=30.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..+||+|||||..|+.+|+.|+++|++|+|+|
T Consensus         5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlE   36 (546)
T PRK11101          5 QETDVIIIGGGATGAGIARDCALRGLRCILVE   36 (546)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCeEEEEE
Confidence            45899999999999999999999999999999

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.46  E-value=7.9e-07  Score=80.63  Aligned_cols=144  Identities=17%  Similarity=0.269  Sum_probs=83.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccC--CCc-----------------hhHHHHhh
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVG--CIP-----------------KKLFHRAS  177 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~--~~p-----------------~~~~~~~~  177 (296)
                      ||+|||+|.|||++|+.|.+. ++|+|+-|+......+-|.-||......  ..|                 ..+..-..
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~   87 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS   87 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence            899999999999999999998 9999999554444445566688653221  122                 22222233


Q ss_pred             hhHHHhhcccccCccccccCCH------------HHHHHHHHHHHHHHHHHHHHHHHH-CCcEEEcceE-E--EEeCC--
Q psy7665         178 LLNEEATTSDNFGFHMKKSFTW------------KTLVDNVQKYIRNLNNNYEKELEK-NKIDYFNAKA-V--FVDKH--  239 (296)
Q Consensus       178 ~~~~~~~~~~~~g~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~-~--~~~~~--  239 (296)
                      +-...+.++..+|++|+...+.            .....--...-..+...+.....+ .+|+++.+.. .  ..+++  
T Consensus        88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~  167 (518)
T COG0029          88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIG  167 (518)
T ss_pred             hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCce
Confidence            3445667777788887652211            000000001112222333444443 4888887632 1  12333  


Q ss_pred             --EEEE--cc-eeEEEEeCeEEEcCCC
Q psy7665         240 --RVKF--AG-EERTVSAQNFIIAVGG  261 (296)
Q Consensus       240 --~v~v--~g-~~~~~~a~~vV~AtG~  261 (296)
                        .+.+  .+ +...+.++.||+|||.
T Consensus       168 ~~Gv~~~~~~~~~~~~~a~~vVLATGG  194 (518)
T COG0029         168 VAGVLVLNRNGELGTFRAKAVVLATGG  194 (518)
T ss_pred             EeEEEEecCCCeEEEEecCeEEEecCC
Confidence              2333  22 3467899999999994

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.45  E-value=1.1e-06  Score=73.72  Aligned_cols=40  Identities=25%  Similarity=0.600  Sum_probs=35.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeec
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVN  164 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~  164 (296)
                      +|+|||+|++|++||+.|++.|.+|+|||  +..      .+||+...
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~e--Kg~------GvGGRlAt   42 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFE--KGR------GVGGRLAT   42 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEE--cCC------Ccccchhe
Confidence            69999999999999999999999999999  444      77886543

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=98.45  E-value=1.7e-06  Score=79.09  Aligned_cols=133  Identities=25%  Similarity=0.270  Sum_probs=81.6

Q ss_pred             ccceeeeeeeccccCCccchhhhccCcce---eec--cccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCC
Q psy7665          75 LHTPYLVLAKARFLLPTLECQEVYHDGRF---YDY--LDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTP  149 (296)
Q Consensus        75 ~~~p~~v~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~  149 (296)
                      ...+|..++++|..+...+..........   .+.  ...... ...+++|||+|+.|+++|..++++|++|+++|  ..
T Consensus        92 ~~~yd~LvlatGa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e--~~  168 (415)
T COG0446          92 EIEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGGAE-PPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIE--AA  168 (415)
T ss_pred             cccccEEEEcCCCcccCCCccccCceEEECCHHHHHHHHHHHh-ccCeEEEECCcHHHHHHHHHHHHcCCeEEEEE--cc
Confidence            34488889998887766551111101111   011  011000 13599999999999999999999999999999  55


Q ss_pred             CCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEE
Q psy7665         150 SQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYF  229 (296)
Q Consensus       150 ~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  229 (296)
                      +      .+++.                                        +..      ..+...+...+++.+++++
T Consensus       169 ~------~~~~~----------------------------------------~~~------~~~~~~~~~~l~~~gi~~~  196 (415)
T COG0446         169 D------RLGGQ----------------------------------------LLD------PEVAEELAELLEKYGVELL  196 (415)
T ss_pred             c------ccchh----------------------------------------hhh------HHHHHHHHHHHHHCCcEEE
Confidence            5      33331                                        000      2233345566778888886


Q ss_pred             cceE-EEEeC--C--E---EEE-cceeEEEEeCeEEEcCCCCCC
Q psy7665         230 NAKA-VFVDK--H--R---VKF-AGEERTVSAQNFIIAVGGRPT  264 (296)
Q Consensus       230 ~~~~-~~~~~--~--~---v~v-~g~~~~~~a~~vV~AtG~~p~  264 (296)
                      .+.. ..+..  .  .   +.. ++  ..+++|.+++++|.+|+
T Consensus       197 ~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~g~~p~  238 (415)
T COG0446         197 LGTKVVGVEGKGNTLVVERVVGIDG--EEIKADLVIIGPGERPN  238 (415)
T ss_pred             eCCceEEEEcccCcceeeEEEEeCC--cEEEeeEEEEeeccccc
Confidence            6543 22221  1  1   122 44  67999999999999884

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.44  E-value=3.7e-06  Score=79.49  Aligned_cols=70  Identities=21%  Similarity=0.222  Sum_probs=46.7

Q ss_pred             ccceeeeeeeccccCCccchhhhcc--Ccceee--ccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665          75 LHTPYLVLAKARFLLPTLECQEVYH--DGRFYD--YLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus        75 ~~~p~~v~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+.++.+++++|+.+..++.++...  ......  ..... .....+|+|||||+.|+++|..|++.|.+|++++
T Consensus       309 ~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~~~~-~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~  382 (515)
T TIGR03140       309 VLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCDGP-FFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLE  382 (515)
T ss_pred             EEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeeccChh-hcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEE
Confidence            3668899999997654443333211  011110  01111 1134589999999999999999999999999999

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK07538 hypothetical protein; Provisional

Probab=98.44  E-value=5.6e-07  Score=82.75  Aligned_cols=30  Identities=27%  Similarity=0.515  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ||+|||||++|+++|..|+++|++|+|+|+
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~   31 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEA   31 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEc
Confidence            899999999999999999999999999993

>KOG0029|consensus

Probab=98.43  E-value=3.2e-07  Score=85.56  Aligned_cols=41  Identities=27%  Similarity=0.470  Sum_probs=36.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      ..++|+|||||+||++||.+|.+.|++|+|+|  .++      .+||+.
T Consensus        14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLE--ARd------RvGGRI   54 (501)
T KOG0029|consen   14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLE--ARD------RVGGRI   54 (501)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHcCCceEEEe--ccC------CcCcee
Confidence            45699999999999999999999999999999  777      666654

>PTZ00367 squalene epoxidase; Provisional

Probab=98.40  E-value=3.9e-07  Score=86.48  Aligned_cols=33  Identities=33%  Similarity=0.641  Sum_probs=31.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ..+||+|||||++|+++|..|++.|++|+|+|+
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr   64 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLER   64 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcc
Confidence            468999999999999999999999999999994

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=98.40  E-value=1.1e-05  Score=73.51  Aligned_cols=35  Identities=37%  Similarity=0.621  Sum_probs=32.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC--CcEEEEeccCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMN--KKVALFDFVTPS  150 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE~~~~~  150 (296)
                      ..+||+|||||..|+++|++|++.+  .+|+|+|  +.+
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llE--k~~   38 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLE--KED   38 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEE--ccC
Confidence            4679999999999999999999998  9999999  555

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.39  E-value=3.7e-06  Score=78.07  Aligned_cols=54  Identities=24%  Similarity=0.381  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHCCcEEEcceEEE---EeCCE---EEE-cceeEEEEeCeEEEcCCCCCCCC
Q psy7665         211 RNLNNNYEKELEKNKIDYFNAKAVF---VDKHR---VKF-AGEERTVSAQNFIIAVGGRPTYP  266 (296)
Q Consensus       211 ~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~---v~v-~g~~~~~~a~~vV~AtG~~p~~p  266 (296)
                      ..+...|.+...+.||+++.++...   .....   |+. +|  .++.||.+|-|||.+..+.
T Consensus       154 ~~fd~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g--~~i~ad~~IDASG~~s~L~  214 (454)
T PF04820_consen  154 AKFDQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDG--RTIEADFFIDASGRRSLLA  214 (454)
T ss_dssp             HHHHHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTS--EEEEESEEEE-SGGG-CCC
T ss_pred             HHHHHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCC--CEEEEeEEEECCCccchhh
Confidence            4566667788888899999886532   22333   333 45  7899999999999765554

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK12831 putative oxidoreductase; Provisional

Probab=98.39  E-value=1.1e-06  Score=81.85  Aligned_cols=90  Identities=12%  Similarity=0.110  Sum_probs=55.1

Q ss_pred             HHHHHHHHhhcCCC----Ccee-eccceeeeeeeccc-cCCccchhhhccC--cceeecccc------------CCCCcc
Q psy7665          56 EAISLSWIKGYNIE----PEVI-KLHTPYLVLAKARF-LLPTLECQEVYHD--GRFYDYLDN------------NFQTYD  115 (296)
Q Consensus        56 e~l~v~~~~~~~~~----~~~~-~~~~p~~v~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~------------~~~~~~  115 (296)
                      +.+++.+++++.+.    .+.+ ....+|+|++|+|+ .+..++.++.+..  ....+.+..            .....+
T Consensus       202 ~~~gv~i~~~~~v~~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~g  281 (464)
T PRK12831        202 KKLGVKIETNVVVGKTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVG  281 (464)
T ss_pred             HHcCCEEEcCCEECCcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCC
Confidence            33445555555332    2222 23458999999997 4544444433211  111111110            001234


Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|+|||||..|+.+|..|.+.|.+|++++
T Consensus       282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~  311 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALRLGAEVHIVY  311 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCEEEEEe
Confidence            689999999999999999999999999999

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.38  E-value=1.7e-05  Score=72.67  Aligned_cols=33  Identities=30%  Similarity=0.518  Sum_probs=30.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC-CC-cEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASM-NK-KVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~-G~-~V~iiE~  146 (296)
                      ..+||+|||||.+|+++|++|+++ |. +|+|+|+
T Consensus        29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~   63 (407)
T TIGR01373        29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEK   63 (407)
T ss_pred             ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEc
Confidence            568999999999999999999995 85 9999994

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=98.37  E-value=3.3e-06  Score=81.61  Aligned_cols=33  Identities=15%  Similarity=0.406  Sum_probs=30.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC-CCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASM-NKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~-G~~V~iiE~  146 (296)
                      ..+||+||||||+|+++|..|++. |.+|+|||+
T Consensus        31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~   64 (634)
T PRK08294         31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVER   64 (634)
T ss_pred             CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEc
Confidence            357999999999999999999995 999999993

>KOG2614|consensus

Probab=98.35  E-value=1.1e-05  Score=71.88  Aligned_cols=31  Identities=19%  Similarity=0.366  Sum_probs=29.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      .+|+|||||.+|+.+|..|.++|.+|+|+|+
T Consensus         3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~   33 (420)
T KOG2614|consen    3 PKVVIVGGGIVGLATALALHRKGIDVVVLES   33 (420)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCeEEEEee
Confidence            3899999999999999999999999999995

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.34  E-value=6.4e-07  Score=80.73  Aligned_cols=41  Identities=32%  Similarity=0.686  Sum_probs=36.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeec
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVN  164 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~  164 (296)
                      +||+|||||++|+++|.+|++.|.+|+|+|  +.+      .+||.|.+
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viE--k~~------~iGG~~~~   42 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVE--KRN------HIGGNCYD   42 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEe--cCC------CCCCceee
Confidence            599999999999999999999999999999  656      67887643

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK07208 hypothetical protein; Provisional

Probab=98.33  E-value=7.5e-07  Score=83.47  Aligned_cols=40  Identities=25%  Similarity=0.462  Sum_probs=35.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      ..||+|||||++||+||++|+++|++|+|+|  +.+      .+||.+
T Consensus         4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E--~~~------~~GG~~   43 (479)
T PRK07208          4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLE--ADP------VVGGIS   43 (479)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEe--cCC------CCCcee
Confidence            4589999999999999999999999999999  677      666654

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.32  E-value=1.9e-05  Score=71.04  Aligned_cols=31  Identities=29%  Similarity=0.348  Sum_probs=28.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCc-EEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKK-VALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~-V~iiE  145 (296)
                      +..|+|||+|+.|+++|..|.+.|.+ |+|++
T Consensus       172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~  203 (352)
T PRK12770        172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAY  203 (352)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEe
Confidence            45899999999999999999999987 99999

>KOG1336|consensus

Probab=98.32  E-value=8.1e-06  Score=73.77  Aligned_cols=158  Identities=15%  Similarity=0.181  Sum_probs=102.3

Q ss_pred             HHHHHHHHHhhcCCCCceee----------ccceeeeeeeccccCCccchhhhc--cCcceeeccc-----cCCCCcccc
Q psy7665          55 AEAISLSWIKGYNIEPEVIK----------LHTPYLVLAKARFLLPTLECQEVY--HDGRFYDYLD-----NNFQTYDYD  117 (296)
Q Consensus        55 ~e~l~v~~~~~~~~~~~~~~----------~~~p~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~d  117 (296)
                      -+..+++.++++.++.-++.          ....+..|+|+|..+..+++++.+  ...++.+.-+     .. ....-.
T Consensus       137 Yke~gIe~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~-~~~~~~  215 (478)
T KOG1336|consen  137 YKEKGIELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAA-IQLGGK  215 (478)
T ss_pred             HhhcCceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHH-hccCce
Confidence            34566777777666544442          345678899999855555555544  2222222111     00 012447


Q ss_pred             EEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccC
Q psy7665         118 LCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSF  197 (296)
Q Consensus       118 VvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~  197 (296)
                      |+++|+|..|+++|..|...+++|++++  +.+               .++|.                           
T Consensus       216 vV~vG~G~ig~Evaa~l~~~~~~VT~V~--~e~---------------~~~~~---------------------------  251 (478)
T KOG1336|consen  216 VVCVGGGFIGMEVAAALVSKAKSVTVVF--PEP---------------WLLPR---------------------------  251 (478)
T ss_pred             EEEECchHHHHHHHHHHHhcCceEEEEc--cCc---------------cchhh---------------------------
Confidence            9999999999999999999999999999  332               11110                           


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEE--E--e-CCEEEE---cceeEEEEeCeEEEcCCCCCCCCCCC
Q psy7665         198 TWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVF--V--D-KHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIP  269 (296)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~--~-~~~v~v---~g~~~~~~a~~vV~AtG~~p~~p~i~  269 (296)
                                .....+...+.+.+++++|+++.++...  .  . .....+   ++  .++.||.||+.+|.+|..+.+.
T Consensus       252 ----------lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg--~~l~adlvv~GiG~~p~t~~~~  319 (478)
T KOG1336|consen  252 ----------LFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDG--KTLEADLVVVGIGIKPNTSFLE  319 (478)
T ss_pred             ----------hhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccC--CEeccCeEEEeecccccccccc
Confidence                      2223445566777889999998775422  1  1 122223   66  7899999999999999887655

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.31  E-value=1.9e-06  Score=80.29  Aligned_cols=70  Identities=19%  Similarity=0.108  Sum_probs=45.7

Q ss_pred             cceeeeeeecccc-CCccchhhhccC--cceeecccc-------CCCCccccEEEECCChHHHHHHHHHHhCCC-cEEEE
Q psy7665          76 HTPYLVLAKARFL-LPTLECQEVYHD--GRFYDYLDN-------NFQTYDYDLCVIGGGSGGISAAKEAASMNK-KVALF  144 (296)
Q Consensus        76 ~~p~~v~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~-------~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~ii  144 (296)
                      ..+|.+++++|+. +...+.++....  ....+.+..       .......+|+|||||..|+.+|..|.+.|. +|+++
T Consensus       224 ~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv  303 (457)
T PRK11749        224 AGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIV  303 (457)
T ss_pred             hhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEe
Confidence            5689999999975 332333322211  111111111       001134589999999999999999999997 89999


Q ss_pred             e
Q psy7665         145 D  145 (296)
Q Consensus       145 E  145 (296)
                      +
T Consensus       304 ~  304 (457)
T PRK11749        304 Y  304 (457)
T ss_pred             e
Confidence            9

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.30  E-value=2.3e-05  Score=74.17  Aligned_cols=70  Identities=19%  Similarity=0.220  Sum_probs=46.1

Q ss_pred             ccceeeeeeeccccCCccchhhhcc--Cccee--eccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665          75 LHTPYLVLAKARFLLPTLECQEVYH--DGRFY--DYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus        75 ~~~p~~v~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+.++.+++|+|..+..+..++...  .....  ...... ...+.+|+|||||..|+++|..|+..+.+|++++
T Consensus       308 ~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~~~-~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~  381 (517)
T PRK15317        308 VLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGP-LFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLE  381 (517)
T ss_pred             EEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccCch-hcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEE
Confidence            3567889999997554333332211  11110  011111 1134589999999999999999999999999999

>TIGR02730 carot_isom carotene isomerase

Probab=98.30  E-value=8.3e-07  Score=83.49  Aligned_cols=39  Identities=36%  Similarity=0.538  Sum_probs=34.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      +||+|||||++|+++|.+|+++|++|+|+|  +.+      .+||.+
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE--~~~------~~GG~~   39 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLE--RYL------IPGGSA   39 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEE--CCC------CCCCce
Confidence            589999999999999999999999999999  666      556654

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.30  E-value=2.2e-06  Score=78.79  Aligned_cols=30  Identities=30%  Similarity=0.564  Sum_probs=28.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-CcEEEEec
Q psy7665         117 DLCVIGGGSGGISAAKEAASMN-KKVALFDF  146 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE~  146 (296)
                      +|+|||||++||++|..|+++| .+|+|+|+
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er   32 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEA   32 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEec
Confidence            6999999999999999999998 59999993

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=98.29  E-value=5.9e-07  Score=88.64  Aligned_cols=29  Identities=24%  Similarity=0.456  Sum_probs=28.1

Q ss_pred             cEEEECCChHHHHHHHHHHhC--CCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASM--NKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE  145 (296)
                      +|+||||||+|+++|..|++.  |++|+|+|
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlE   32 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVE   32 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEe
Confidence            799999999999999999998  89999999

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.29  E-value=1e-06  Score=81.73  Aligned_cols=58  Identities=10%  Similarity=0.072  Sum_probs=53.8

Q ss_pred             cceeecCCCCeEEEEEEEcCC-hhHHHHHHHHHHHcCCCHHHHccCcCCC-CChHHHHHH
Q psy7665           3 LPKLGGSEVSTFITAEISSNN-AGEITQGYALGVMLGAYKQDFDALIGIH-PTCAEAISL   60 (296)
Q Consensus         3 ~~~~~~~~~~~ilG~~~~g~~-a~e~i~~~~~~~~~~~~k~~l~~~i~~~-pt~~e~l~v   60 (296)
                      +|+++|++|++|||+|++|++ ++|+|+.++++|+++.+.++|.+..+.| |+++|....
T Consensus       376 ~klv~~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~  435 (444)
T PRK09564        376 VKLIYEADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMDFCYAPPFARTWDA  435 (444)
T ss_pred             EEEEEECCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCCCcCH
Confidence            689999999999999999996 8999999999999999999999999888 999987644

>KOG4716|consensus

Probab=98.29  E-value=1.2e-06  Score=75.72  Aligned_cols=56  Identities=39%  Similarity=0.562  Sum_probs=50.6

Q ss_pred             cceeecC-CCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHH
Q psy7665           3 LPKLGGS-EVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI   58 (296)
Q Consensus         3 ~~~~~~~-~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l   58 (296)
                      +|+|.++ ++.+|+|.|++||+|+|+||+++.|++.++++.+|.++|-.||+.+|..
T Consensus       428 ~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfaaAlk~glt~~~l~ntigIHPt~aE~F  484 (503)
T KOG4716|consen  428 LKAVCERDEDQKVLGLHILGPNAGEVIQGFAAALKCGLTKKDLDNTIGIHPTTAEEF  484 (503)
T ss_pred             EEEeecccCCceEEEEEEecCchhHHHHHHHHHHHhcccHHHHhhcccccccchhhe
Confidence            4667654 4578999999999999999999999999999999999999999999865

>KOG2415|consensus

Probab=98.28  E-value=2.3e-06  Score=75.91  Aligned_cols=42  Identities=24%  Similarity=0.559  Sum_probs=34.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC------CCcEEEEeccCCCCCCcccccCCeee
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASM------NKKVALFDFVTPSQHGTVWGLGGTCV  163 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~------G~~V~iiE~~~~~~~g~~~~~GG~~~  163 (296)
                      ..+||+||||||||++||.+|.+.      ..+|+|+|  +..      .+||...
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvE--Kaa------~~Gghtl  122 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVE--KAA------EVGGHTL  122 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEe--ecc------ccCCcee
Confidence            678999999999999999999875      35799999  666      5566443

>PRK07233 hypothetical protein; Provisional

Probab=98.28  E-value=9.7e-07  Score=81.43  Aligned_cols=38  Identities=32%  Similarity=0.660  Sum_probs=33.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      +|+|||||++||+||++|+++|++|+|+|  +.+      .+||.+
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE--~~~------~~GG~~   38 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFE--ADD------QLGGLA   38 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEE--eCC------CCCCce
Confidence            58999999999999999999999999999  777      566644

>PLN02576 protoporphyrinogen oxidase

Probab=98.28  E-value=1e-06  Score=82.96  Aligned_cols=41  Identities=29%  Similarity=0.456  Sum_probs=36.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC-CCcEEEEeccCCCCCCcccccCCee
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASM-NKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~-G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      ..+||+|||||++||+||++|.++ |++|+|+|  +.+      .+||.+
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlE--a~~------rvGGr~   52 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTE--ARD------RVGGNI   52 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEe--cCC------CCCCce
Confidence            456999999999999999999999 99999999  677      677754

>KOG2495|consensus

Probab=98.28  E-value=1.3e-05  Score=71.53  Aligned_cols=167  Identities=16%  Similarity=0.183  Sum_probs=101.5

Q ss_pred             eccceeeeeeeccccCCccchhhhccCccee-------ec---------------cccCCCCccccEEEECCChHHHHHH
Q psy7665          74 KLHTPYLVLAKARFLLPTLECQEVYHDGRFY-------DY---------------LDNNFQTYDYDLCVIGGGSGGISAA  131 (296)
Q Consensus        74 ~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~-------~~---------------~~~~~~~~~~dVvVIGgG~aG~~aA  131 (296)
                      -.+.+|-.++|+|+.+....+++......+.       +.               +..++...-..++||||||.|.+.|
T Consensus       155 ~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFA  234 (491)
T KOG2495|consen  155 FVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFA  234 (491)
T ss_pred             eeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeeh
Confidence            4567899999999877776666433322110       00               1111122346799999999999999


Q ss_pred             HHHHh--------------CCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccC
Q psy7665         132 KEAAS--------------MNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSF  197 (296)
Q Consensus       132 ~~l~~--------------~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~  197 (296)
                      .+|+.              .-.+|+++|  ..+                                               
T Consensus       235 aEL~Dfi~~Dl~k~yp~l~~~i~vtLiE--A~d-----------------------------------------------  265 (491)
T KOG2495|consen  235 AELADFIPEDLRKIYPELKKDIKVTLIE--AAD-----------------------------------------------  265 (491)
T ss_pred             HHHHHHHHHHHHHhhhcchhheEEEeec--cch-----------------------------------------------
Confidence            99874              134689998  222                                               


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceE-EEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCC------CC
Q psy7665         198 TWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA-VFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTY------PD  267 (296)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~------p~  267 (296)
                         .....++...   .....+.+.+.++++..++. ...+...+++   +|+..++.+--+|-|||..|+.      -.
T Consensus       266 ---~iL~mFdkrl---~~yae~~f~~~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~rp~~k~lm~~  339 (491)
T KOG2495|consen  266 ---HILNMFDKRL---VEYAENQFVRDGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDLMKQ  339 (491)
T ss_pred             ---hHHHHHHHHH---HHHHHHHhhhccceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCchhhhhHhhc
Confidence               1222222222   22234556777999988755 3356666766   5666789999999999964432      23


Q ss_pred             CCCCc-cceee-cccCCCCCCcEEEeeccC
Q psy7665         268 IPGAR-LLRTL-SLLSGVDPPTLIFLEHIS  295 (296)
Q Consensus       268 i~G~~-~~~~~-s~~~~~~~~~~~~~~~~~  295 (296)
                      +++.. ..+.. -.+..+-.+....|++.+
T Consensus       340 i~e~~rr~L~vDE~LrV~G~~nvfAiGDca  369 (491)
T KOG2495|consen  340 IDEQGRRGLAVDEWLRVKGVKNVFAIGDCA  369 (491)
T ss_pred             CCccCceeeeeeceeeccCcCceEEecccc
Confidence            44333 23333 355566666666666543

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.27  E-value=1.1e-06  Score=81.70  Aligned_cols=38  Identities=32%  Similarity=0.595  Sum_probs=34.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--CcEEEEeccCCCCCCcccccCCee
Q psy7665         117 DLCVIGGGSGGISAAKEAASMN--KKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      +|+|||||++||+||+.|++.|  ++|+|+|  +.+      .+||.+
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlE--a~~------~~GGr~   41 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKGPDADITLLE--ASD------RLGGKI   41 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCCEEEEE--cCC------CCcceE
Confidence            6999999999999999999988  8999999  777      667754

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.26  E-value=1e-06  Score=82.80  Aligned_cols=35  Identities=31%  Similarity=0.454  Sum_probs=32.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCC
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQH  152 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~  152 (296)
                      .||+|||||++|++||..|+++|++|+|+|  +.+.+
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE--~~~~~   36 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLE--QHAQP   36 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEe--cCCCC
Confidence            489999999999999999999999999999  77733

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PLN02268 probable polyamine oxidase

Probab=98.26  E-value=1.2e-06  Score=81.02  Aligned_cols=32  Identities=38%  Similarity=0.612  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      +|+|||||.+|++||+.|.+.|++|+|+|  ..+
T Consensus         2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlE--a~~   33 (435)
T PLN02268          2 SVIVIGGGIAGIAAARALHDASFKVTLLE--SRD   33 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEe--CCC
Confidence            79999999999999999999999999999  777

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.25  E-value=1.3e-06  Score=81.50  Aligned_cols=39  Identities=26%  Similarity=0.465  Sum_probs=34.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhC----CCcEEEEeccCCCCCCcccccCCee
Q psy7665         116 YDLCVIGGGSGGISAAKEAASM----NKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~----G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      .||+|||||++||+||++|+++    |++|+|+|  +.+      .+||.+
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE--~~~------r~GG~~   45 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVE--ASD------RVGGKI   45 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEE--cCC------cCcceE
Confidence            4899999999999999999999    99999999  677      667655

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=98.25  E-value=3.4e-06  Score=79.83  Aligned_cols=114  Identities=25%  Similarity=0.349  Sum_probs=72.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhC---CCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASM---NKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFH  192 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~---G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~  192 (296)
                      .+++|||-|++|..+..++.+.   -++++++-  ..+      .+.-                            ..+.
T Consensus         4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg--~Ep------~~nY----------------------------~Ri~   47 (793)
T COG1251           4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFG--EEP------RPNY----------------------------NRIL   47 (793)
T ss_pred             eeEEEEecccchhhHHHHHHhcCcccceEEEec--cCC------Cccc----------------------------ccee
Confidence            4799999999999999999984   36788886  222      1000                            0000


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceE-EEEeC--CEEEE-cceeEEEEeCeEEEcCCCCCCCCCC
Q psy7665         193 MKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA-VFVDK--HRVKF-AGEERTVSAQNFIIAVGGRPTYPDI  268 (296)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~--~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~i  268 (296)
                      ....+..+       ...+++...-.+++++++++++.++. ..++.  ..|+. .|  .++.+|.+|+|||+.|++|++
T Consensus        48 Ls~vl~~~-------~~~edi~l~~~dwy~~~~i~L~~~~~v~~idr~~k~V~t~~g--~~~~YDkLilATGS~pfi~Pi  118 (793)
T COG1251          48 LSSVLAGE-------KTAEDISLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDAG--RTVSYDKLIIATGSYPFILPI  118 (793)
T ss_pred             eccccCCC-------ccHHHHhccchhhHHHcCcEEEcCCeeEEeccCcceEEccCC--cEeecceeEEecCccccccCC
Confidence            00000000       01112222234566788999988765 33433  34444 55  789999999999999999999


Q ss_pred             CCCccc
Q psy7665         269 PGARLL  274 (296)
Q Consensus       269 ~G~~~~  274 (296)
                      ||.+.+
T Consensus       119 PG~~~~  124 (793)
T COG1251         119 PGSDLP  124 (793)
T ss_pred             CCCCCC
Confidence            998743

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.25  E-value=2.9e-06  Score=84.52  Aligned_cols=90  Identities=17%  Similarity=0.140  Sum_probs=55.3

Q ss_pred             HHHHHHHHhhcCC--CCceeeccceeeeeeeccccCCcc-chhhhcc-Ccceeecccc-----CCCCccccEEEECCChH
Q psy7665          56 EAISLSWIKGYNI--EPEVIKLHTPYLVLAKARFLLPTL-ECQEVYH-DGRFYDYLDN-----NFQTYDYDLCVIGGGSG  126 (296)
Q Consensus        56 e~l~v~~~~~~~~--~~~~~~~~~p~~v~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~-----~~~~~~~dVvVIGgG~a  126 (296)
                      +.+++++++++.+  +.+.+....+|+|++|+|+..+.. +..+... .....+.+..     .....+.+|+|||||.+
T Consensus       600 ~~~GVe~~~gt~Vdi~le~L~~~gYDaVILATGA~~~~~l~IpG~~~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnV  679 (1019)
T PRK09853        600 KAHGVKFEFGCSPDLTVEQLKNEGYDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNT  679 (1019)
T ss_pred             HHcCCEEEeCceeEEEhhhheeccCCEEEECcCCCCCCCCCCCCccCCceehHHHHHHHhhhcccccCCCEEEEECCChH
Confidence            3345566666644  444555667899999999864432 2222211 1111111110     00123568999999999


Q ss_pred             HHHHHHHHHhC-C-CcEEEEe
Q psy7665         127 GISAAKEAASM-N-KKVALFD  145 (296)
Q Consensus       127 G~~aA~~l~~~-G-~~V~iiE  145 (296)
                      |+.+|..+.+. | .+|+++.
T Consensus       680 AmD~Ar~a~RlgGakeVTLVy  700 (1019)
T PRK09853        680 AMDAARAALRVPGVEKVTVVY  700 (1019)
T ss_pred             HHHHHHHHHhcCCCceEEEEE
Confidence            99999998887 4 4899999

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.21  E-value=3.3e-05  Score=71.86  Aligned_cols=69  Identities=17%  Similarity=0.125  Sum_probs=45.9

Q ss_pred             ceeeeeeeccc-cCCccchhhhccC--cceeecccc-------------CCCCccccEEEECCChHHHHHHHHHHhCCCc
Q psy7665          77 TPYLVLAKARF-LLPTLECQEVYHD--GRFYDYLDN-------------NFQTYDYDLCVIGGGSGGISAAKEAASMNKK  140 (296)
Q Consensus        77 ~p~~v~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~-------------~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~  140 (296)
                      .+|++++++|+ .+..++.++.+..  ....+.+..             .....+.+|+|||||..|+.+|..+.+.|.+
T Consensus       218 ~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~  297 (449)
T TIGR01316       218 QYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAE  297 (449)
T ss_pred             hCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCE
Confidence            57999999997 4444433332211  111111100             0011345899999999999999999999999


Q ss_pred             EEEEe
Q psy7665         141 VALFD  145 (296)
Q Consensus       141 V~iiE  145 (296)
                      |++++
T Consensus       298 Vtlv~  302 (449)
T TIGR01316       298 VHCLY  302 (449)
T ss_pred             EEEEe
Confidence            99999

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.21  E-value=1.8e-06  Score=74.20  Aligned_cols=40  Identities=28%  Similarity=0.573  Sum_probs=37.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeee
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCV  163 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~  163 (296)
                      +|.+|||+|.+|+..|..|+++|++|+|+|  +++      .+||.|-
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIve--kR~------HIGGNaY   41 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVE--KRN------HIGGNAY   41 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHcCCEEEEEe--ccc------cCCCccc
Confidence            699999999999999999999999999999  677      9999983

>TIGR02734 crtI_fam phytoene desaturase

Probab=98.21  E-value=1.5e-06  Score=81.98  Aligned_cols=31  Identities=29%  Similarity=0.444  Sum_probs=29.7

Q ss_pred             EEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         118 LCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       118 VvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      |||||||++||+||.+|++.|++|+|+|  +.+
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE--~~~   31 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVE--QRD   31 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEE--CCC
Confidence            6899999999999999999999999999  777

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.20  E-value=1.8e-05  Score=80.32  Aligned_cols=132  Identities=15%  Similarity=0.117  Sum_probs=83.2

Q ss_pred             ceeeccceeeeeeeccccCCccchhhhccCc--ce---eeccccCCCCccccEEEECCChHHHHHHHHHHhCCC-cEEEE
Q psy7665          71 EVIKLHTPYLVLAKARFLLPTLECQEVYHDG--RF---YDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNK-KVALF  144 (296)
Q Consensus        71 ~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~ii  144 (296)
                      +.+..+.++.+|+|+|+.+..++.++.....  ..   ...+.......+.+|+|||+|+.|+++|..|++.|. .|+|+
T Consensus       268 ~~~~~i~a~~VILATGa~~r~~pipG~~~pgV~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv  347 (985)
T TIGR01372       268 ERLWRIRAKRVVLATGAHERPLVFANNDRPGVMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAII  347 (985)
T ss_pred             cceEEEEcCEEEEcCCCCCcCCCCCCCCCCCcEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEE
Confidence            3344678999999999876555443322211  11   122221111134589999999999999999999995 58899


Q ss_pred             eccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q psy7665         145 DFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKN  224 (296)
Q Consensus       145 E~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (296)
                      |  ..+                                             .     .           ...+...+++.
T Consensus       348 ~--~~~---------------------------------------------~-----~-----------~~~l~~~L~~~  364 (985)
T TIGR01372       348 D--ARA---------------------------------------------D-----V-----------SPEARAEAREL  364 (985)
T ss_pred             c--cCc---------------------------------------------c-----h-----------hHHHHHHHHHc
Confidence            8  322                                             0     0           01123456777


Q ss_pred             CcEEEcceEE-EE-eCC---EEEE---cceeEEEEeCeEEEcCCCCCCC
Q psy7665         225 KIDYFNAKAV-FV-DKH---RVKF---AGEERTVSAQNFIIAVGGRPTY  265 (296)
Q Consensus       225 ~v~~~~~~~~-~~-~~~---~v~v---~g~~~~~~a~~vV~AtG~~p~~  265 (296)
                      ||+++.+... .+ ...   .|++   ++...++.||.|+++.|..|+.
T Consensus       365 GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt  413 (985)
T TIGR01372       365 GIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVV  413 (985)
T ss_pred             CCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchh
Confidence            9999877542 22 222   2343   2344679999999999998865

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.19  E-value=2e-06  Score=78.66  Aligned_cols=38  Identities=32%  Similarity=0.573  Sum_probs=34.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      .|+|+|||.||++||++|+++|++|+|+|  ..+      .+||-|
T Consensus         2 rVai~GaG~AgL~~a~~La~~g~~vt~~e--a~~------~~GGk~   39 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADAGYDVTLYE--ARD------RLGGKV   39 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCceEEEe--ccC------ccCcee
Confidence            69999999999999999999999999999  777      666654

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.18  E-value=4.6e-06  Score=83.43  Aligned_cols=89  Identities=15%  Similarity=0.148  Sum_probs=53.3

Q ss_pred             HHHHHHHhhcC--CCCceeeccceeeeeeeccccCCcc-chhhhcc-Ccceeeccc----c-CCCCccccEEEECCChHH
Q psy7665          57 AISLSWIKGYN--IEPEVIKLHTPYLVLAKARFLLPTL-ECQEVYH-DGRFYDYLD----N-NFQTYDYDLCVIGGGSGG  127 (296)
Q Consensus        57 ~l~v~~~~~~~--~~~~~~~~~~p~~v~~~~~~~~~~~-~~~~~~~-~~~~~~~~~----~-~~~~~~~dVvVIGgG~aG  127 (296)
                      .+++++++++.  ++.+.+....+|+|++|+|+..+.. ...+... .....+.+.    . .....+.+|+|||||..|
T Consensus       599 ~~GVe~~~g~~~d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~~~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvA  678 (1012)
T TIGR03315       599 FHGVEFKYGCSPDLTVAELKNQGYKYVILAIGAWKHGPLRLEGGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTA  678 (1012)
T ss_pred             hcCcEEEEecccceEhhhhhcccccEEEECCCCCCCCCCCcCCCCcceeeHHHHHHHhhccccccccCCeEEEECCCHHH
Confidence            34555555532  2334455667999999999764432 2222111 111111111    0 111245689999999999


Q ss_pred             HHHHHHHHhC-CC-cEEEEe
Q psy7665         128 ISAAKEAASM-NK-KVALFD  145 (296)
Q Consensus       128 ~~aA~~l~~~-G~-~V~iiE  145 (296)
                      +.+|..+.+. |. +|++++
T Consensus       679 mD~Ar~a~Rl~Ga~kVtLVy  698 (1012)
T TIGR03315       679 MDAARAALRVPGVEKVTVVY  698 (1012)
T ss_pred             HHHHHHHHHhCCCceEEEEE
Confidence            9999999886 75 799999

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.18  E-value=7.4e-06  Score=80.94  Aligned_cols=77  Identities=14%  Similarity=0.166  Sum_probs=49.9

Q ss_pred             CCceeeccceeeeeeeccc-cCCccchhhhcc--Ccceeecccc------------CCCCccccEEEECCChHHHHHHHH
Q psy7665          69 EPEVIKLHTPYLVLAKARF-LLPTLECQEVYH--DGRFYDYLDN------------NFQTYDYDLCVIGGGSGGISAAKE  133 (296)
Q Consensus        69 ~~~~~~~~~p~~v~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~------------~~~~~~~dVvVIGgG~aG~~aA~~  133 (296)
                      +.+.+....+|+|++++|+ .+..+++++.+.  .....+.+..            .....+.+|+|||||..|+.+|..
T Consensus       509 ~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~  588 (752)
T PRK12778        509 TIEELEEEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSART  588 (752)
T ss_pred             CHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHH
Confidence            3334445668999999997 444444433221  1111111110            001134689999999999999999


Q ss_pred             HHhCCCc-EEEEe
Q psy7665         134 AASMNKK-VALFD  145 (296)
Q Consensus       134 l~~~G~~-V~iiE  145 (296)
                      +.+.|.+ |++++
T Consensus       589 ~~r~Ga~~Vtlv~  601 (752)
T PRK12778        589 AKRLGAERVTIVY  601 (752)
T ss_pred             HHHcCCCeEEEee
Confidence            9999987 99999

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.17  E-value=4.2e-06  Score=83.98  Aligned_cols=93  Identities=14%  Similarity=0.163  Sum_probs=60.0

Q ss_pred             ChHHHHHHHHHhhcCC----CCceeeccceeeeeeecccc-CCccchhhhcc--Ccceeecccc-------------C-C
Q psy7665          53 TCAEAISLSWIKGYNI----EPEVIKLHTPYLVLAKARFL-LPTLECQEVYH--DGRFYDYLDN-------------N-F  111 (296)
Q Consensus        53 t~~e~l~v~~~~~~~~----~~~~~~~~~p~~v~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~-------------~-~  111 (296)
                      ...+.+++.+++|+.+    +.+.+....+|+|++++|+. +...++++.+.  .....+.+..             + .
T Consensus       364 ~~l~~~Gv~f~~n~~vG~dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~  443 (944)
T PRK12779        364 EKIKLLGGRFVKNFVVGKTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLP  443 (944)
T ss_pred             HHHHhhcCeEEEeEEeccEEeHHHhccccCCEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhcccccccccccc
Confidence            3455667776666554    44445556799999999984 43334333221  1111222210             0 0


Q ss_pred             CCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       112 ~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ...+.+|+|||||..|+.+|..+.+.|.+|+++.
T Consensus       444 ~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~  477 (944)
T PRK12779        444 EVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVY  477 (944)
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE
Confidence            1134689999999999999999999999999998

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.12  E-value=3.6e-06  Score=75.82  Aligned_cols=41  Identities=27%  Similarity=0.486  Sum_probs=36.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      ...||+|||+|.+||.+|+.|.+.|++|+|+|  .++      .+||+|
T Consensus         6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilE--ar~------r~GGR~   46 (450)
T COG1231           6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILE--ARD------RVGGRS   46 (450)
T ss_pred             CCCcEEEECCchHHHHHHHHHhhcCcEEEEEe--ccC------CcCcee
Confidence            45699999999999999999999999999999  566      777765

>KOG1298|consensus

Probab=98.12  E-value=3.8e-05  Score=67.74  Aligned_cols=35  Identities=20%  Similarity=0.282  Sum_probs=32.2

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCCcEEEEecc
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFV  147 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~  147 (296)
                      +..+||+|||||.+|++.|+.|++.|.+|.|+|++
T Consensus        43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD   77 (509)
T KOG1298|consen   43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD   77 (509)
T ss_pred             CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence            45679999999999999999999999999999943

>KOG2404|consensus

Probab=98.12  E-value=3.6e-05  Score=66.34  Aligned_cols=38  Identities=32%  Similarity=0.610  Sum_probs=33.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      .|||||+|.||++|+..+...|-.|+++|  +..      .+||..
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~lle--k~~------s~GGNS   48 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLE--KAG------SIGGNS   48 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEe--ccC------CcCCcc
Confidence            59999999999999999999999999999  666      677754

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=98.10  E-value=1.2e-05  Score=76.21  Aligned_cols=136  Identities=19%  Similarity=0.222  Sum_probs=89.2

Q ss_pred             eccceeeeeeeccccCCccchhhhccC--ccee---ecccc-CCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEecc
Q psy7665          74 KLHTPYLVLAKARFLLPTLECQEVYHD--GRFY---DYLDN-NFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFV  147 (296)
Q Consensus        74 ~~~~p~~v~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~-~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~  147 (296)
                      ....+|..|+|+|+.|-.++.++....  ...+   +.... ........-+|||||.=|+++|..|...|.+|.+++  
T Consensus        98 ~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh--  175 (793)
T COG1251          98 RTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVH--  175 (793)
T ss_pred             cEeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEe--
Confidence            345678999999998888887765532  2222   11110 001122357999999999999999999999999999  


Q ss_pred             CCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcE
Q psy7665         148 TPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKID  227 (296)
Q Consensus       148 ~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  227 (296)
                      ..+                                                 .-+..+++.....+   +...+++.|++
T Consensus       176 ~~~-------------------------------------------------~lMerQLD~~ag~l---L~~~le~~Gi~  203 (793)
T COG1251         176 IAP-------------------------------------------------TLMERQLDRTAGRL---LRRKLEDLGIK  203 (793)
T ss_pred             ecc-------------------------------------------------hHHHHhhhhHHHHH---HHHHHHhhcce
Confidence            332                                                 01333344433333   45667888999


Q ss_pred             EEcceEE--EEeC---CEEEE-cceeEEEEeCeEEEcCCCCCCC
Q psy7665         228 YFNAKAV--FVDK---HRVKF-AGEERTVSAQNFIIAVGGRPTY  265 (296)
Q Consensus       228 ~~~~~~~--~~~~---~~v~v-~g~~~~~~a~~vV~AtG~~p~~  265 (296)
                      ++++...  ....   ..+.. +|  ..+.||.||.|+|.+|+.
T Consensus       204 ~~l~~~t~ei~g~~~~~~vr~~DG--~~i~ad~VV~a~GIrPn~  245 (793)
T COG1251         204 VLLEKNTEEIVGEDKVEGVRFADG--TEIPADLVVMAVGIRPND  245 (793)
T ss_pred             eecccchhhhhcCcceeeEeecCC--CcccceeEEEeccccccc
Confidence            8875431  1222   23333 56  678999999999998875

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.10  E-value=3.8e-06  Score=78.18  Aligned_cols=33  Identities=21%  Similarity=0.366  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCC
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQ  151 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~  151 (296)
                      +|+|||||++|++||++|.++|++|+|+|  +.++
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE--~~~~   33 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLE--ARDV   33 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEe--cCCC
Confidence            58999999999999999999999999999  6663

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.08  E-value=3.6e-06  Score=77.64  Aligned_cols=42  Identities=26%  Similarity=0.261  Sum_probs=38.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeee
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCV  163 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~  163 (296)
                      ..|||+|||+|.+||.+|..|++.|++|+++|  +++      ..||.+.
T Consensus         3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD--~n~------~yGG~~a   44 (443)
T PTZ00363          3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMD--RNP------YYGGESA   44 (443)
T ss_pred             CcceEEEECCChHHHHHHhhhhhCCCEEEEec--CCC------CcCcccc
Confidence            46899999999999999999999999999999  777      7788664

>KOG3851|consensus

Probab=98.08  E-value=3.4e-06  Score=72.36  Aligned_cols=33  Identities=30%  Similarity=0.560  Sum_probs=28.7

Q ss_pred             CccccEEEECCChHHHHHHHHHHhC-C-CcEEEEe
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASM-N-KKVALFD  145 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~-G-~~V~iiE  145 (296)
                      ...++|+|||||.+||.+|..+.++ | -+|.|+|
T Consensus        37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIve   71 (446)
T KOG3851|consen   37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVE   71 (446)
T ss_pred             ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEec
Confidence            4678999999999999999988765 5 4799999

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=98.06  E-value=5.3e-06  Score=78.24  Aligned_cols=32  Identities=44%  Similarity=0.639  Sum_probs=30.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..+||+|||||.+|+.+|+.|+++|++|+|+|
T Consensus         5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvE   36 (508)
T PRK12266          5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCE   36 (508)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEe
Confidence            45899999999999999999999999999999

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.05  E-value=5e-06  Score=75.11  Aligned_cols=41  Identities=41%  Similarity=0.592  Sum_probs=37.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      ...+++|||||++|++||+.|++.|++|.++|  +.+      .+||.-
T Consensus       123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVE--Kep------siGGrm  163 (622)
T COG1148         123 VSKSVLVIGGGVAGITAALELADMGFKVYLVE--KEP------SIGGRM  163 (622)
T ss_pred             hccceEEEcCcHHHHHHHHHHHHcCCeEEEEe--cCC------cccccH
Confidence            45689999999999999999999999999999  777      888864

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.04  E-value=1.7e-05  Score=74.15  Aligned_cols=70  Identities=21%  Similarity=0.206  Sum_probs=43.9

Q ss_pred             cceeeeeeeccccCC-ccchhhhccC--cceeecc--------cc----CCCCccccEEEECCChHHHHHHHHHHhCCC-
Q psy7665          76 HTPYLVLAKARFLLP-TLECQEVYHD--GRFYDYL--------DN----NFQTYDYDLCVIGGGSGGISAAKEAASMNK-  139 (296)
Q Consensus        76 ~~p~~v~~~~~~~~~-~~~~~~~~~~--~~~~~~~--------~~----~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~-  139 (296)
                      ..+|.+++++|+..+ ....++....  ....+.+        ..    .....+.+|+|||||..|+.+|..+.+.|. 
T Consensus       227 ~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~  306 (471)
T PRK12810        227 AEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAK  306 (471)
T ss_pred             hhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCC
Confidence            368999999998633 3333332211  1110111        00    011234589999999999999999988885 


Q ss_pred             cEEEEe
Q psy7665         140 KVALFD  145 (296)
Q Consensus       140 ~V~iiE  145 (296)
                      +|++++
T Consensus       307 ~Vt~~~  312 (471)
T PRK12810        307 SVTQRD  312 (471)
T ss_pred             eEEEcc
Confidence            788877

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.03  E-value=8.9e-05  Score=70.79  Aligned_cols=69  Identities=19%  Similarity=0.084  Sum_probs=47.5

Q ss_pred             cceeeeeeeccccCCccchhhhcc--Cccee--eccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665          76 HTPYLVLAKARFLLPTLECQEVYH--DGRFY--DYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus        76 ~~p~~v~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +.++.+|+|+|+.+..++.++...  .....  ...... .....+|+|||||+.|+++|..|++.|.+|++++
T Consensus       101 ~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~~~-~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~  173 (555)
T TIGR03143       101 YKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDGE-FFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIV  173 (555)
T ss_pred             EEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecChh-hcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEE
Confidence            567889999998765554443221  11111  111111 1234589999999999999999999999999999

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=98.03  E-value=6.4e-06  Score=76.90  Aligned_cols=38  Identities=29%  Similarity=0.475  Sum_probs=33.1

Q ss_pred             cEEEECCChHHHHHHHHHHhC------CCcEEEEeccCCCCCCcccccCCee
Q psy7665         117 DLCVIGGGSGGISAAKEAASM------NKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~------G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      +|+|||||.+|++||++|++.      |.+|+|+|  ..+      .+||.+
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlE--a~~------r~GGr~   46 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVE--KEE------YLGGKI   46 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEe--cCC------CccceE
Confidence            699999999999999999986      37999999  777      667754

>KOG2495|consensus

Probab=98.03  E-value=3.9e-05  Score=68.49  Aligned_cols=119  Identities=22%  Similarity=0.355  Sum_probs=70.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      .+..|||+|.|.+|++....+-..-++|+++.  ..+      ..-=++    ..|+                ...|   
T Consensus        54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVS--PRn------yFlFTP----LLpS----------------~~vG---  102 (491)
T KOG2495|consen   54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVS--PRN------YFLFTP----LLPS----------------TTVG---  102 (491)
T ss_pred             CCceEEEEcCchHHHHHHHhccccccceEEec--ccc------ceEEee----ccCC----------------cccc---
Confidence            45689999999999999999999999999999  433      110000    0000                0000   


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEE--eCCEEEE-----c--ceeEEEEeCeEEEcCCCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFV--DKHRVKF-----A--GEERTVSAQNFIIAVGGRPT  264 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~v~v-----~--g~~~~~~a~~vV~AtG~~p~  264 (296)
                        .+....+.+.......         -+..++.++..+...+  +.+.|++     +  ..+..+.+|++|+|+|++++
T Consensus       103 --Tve~rSIvEPIr~i~r---------~k~~~~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~  171 (491)
T KOG2495|consen  103 --TVELRSIVEPIRAIAR---------KKNGEVKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPN  171 (491)
T ss_pred             --ceeehhhhhhHHHHhh---------ccCCCceEEecccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCC
Confidence              1111112211111111         1122566666544333  3455655     2  22457899999999999999


Q ss_pred             CCCCCCCccc
Q psy7665         265 YPDIPGARLL  274 (296)
Q Consensus       265 ~p~i~G~~~~  274 (296)
                      .++|||..++
T Consensus       172 TFgipGV~e~  181 (491)
T KOG2495|consen  172 TFGIPGVEEN  181 (491)
T ss_pred             CCCCCchhhc
Confidence            9999997643

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.02  E-value=7.1e-05  Score=68.15  Aligned_cols=33  Identities=24%  Similarity=0.519  Sum_probs=27.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC---CcEEEEeccCCC
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMN---KKVALFDFVTPS  150 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G---~~V~iiE~~~~~  150 (296)
                      ++|+|||+|++|+.+|.+|.+.-   ..+.|+|  +..
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e--~~~   37 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFE--PRP   37 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEec--ccc
Confidence            58999999999999999998752   2399999  555

>PLN02568 polyamine oxidase

Probab=98.02  E-value=7.6e-06  Score=77.49  Aligned_cols=40  Identities=20%  Similarity=0.430  Sum_probs=34.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-----CcEEEEeccCCCCCCcccccCCee
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMN-----KKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G-----~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      ..||+|||||++|++||.+|++.|     ++|+|+|  +.+      .+||.+
T Consensus         5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E--~~~------~~GGr~   49 (539)
T PLN02568          5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVE--GGD------RIGGRI   49 (539)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEe--CCC------CcCCeE
Confidence            358999999999999999999887     8999999  666      666654

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.02  E-value=7.4e-06  Score=77.24  Aligned_cols=32  Identities=47%  Similarity=0.678  Sum_probs=30.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..+||+|||||.+|+.+|+.|+++|.+|+|+|
T Consensus         5 ~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlE   36 (502)
T PRK13369          5 ETYDLFVIGGGINGAGIARDAAGRGLKVLLCE   36 (502)
T ss_pred             cccCEEEECCCHHHHHHHHHHHhCCCcEEEEE
Confidence            45899999999999999999999999999999

>PLN02529 lysine-specific histone demethylase 1

Probab=98.01  E-value=8.5e-06  Score=79.28  Aligned_cols=36  Identities=22%  Similarity=0.446  Sum_probs=32.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQ  151 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~  151 (296)
                      ..+||+|||||++|++||..|+++|++|+|+|  ..++
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E--~~~~  194 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLE--GRNR  194 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEe--cCcc
Confidence            45699999999999999999999999999999  5553

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=98.01  E-value=9.8e-06  Score=74.84  Aligned_cols=55  Identities=15%  Similarity=0.124  Sum_probs=50.0

Q ss_pred             CcceeecCCCCeEEEEEEEcCC-hhHHHHHHHHHHHcCCCHHHHccCcC-CCCChHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNN-AGEITQGYALGVMLGAYKQDFDALIG-IHPTCAE   56 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~-a~e~i~~~~~~~~~~~~k~~l~~~i~-~~pt~~e   56 (296)
                      .+|+++|++|++|||++++|++ ++|+|+.++++|+++++.++|.++++ ++|.+..
T Consensus       362 ~~kli~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~p~~~~  418 (427)
T TIGR03385       362 HLKLIYEKDTRRILGAQAVGKEGADKRIDVLAAAIMAGLTVKDLFFFELAYAPPYSR  418 (427)
T ss_pred             EEEEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCC
Confidence            3689999999999999999999 99999999999999999999999985 6676654

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PLN02676 polyamine oxidase

Probab=97.98  E-value=8.6e-06  Score=76.38  Aligned_cols=36  Identities=22%  Similarity=0.421  Sum_probs=32.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCC-cEEEEeccCCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNK-KVALFDFVTPSQ  151 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE~~~~~~  151 (296)
                      ..+||+|||||++|+.||++|++.|. +|+|+|  +.++
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE--~~~~   61 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILE--ATDR   61 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEec--CCCC
Confidence            45699999999999999999999998 699999  6663

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.94  E-value=5.2e-05  Score=73.69  Aligned_cols=69  Identities=22%  Similarity=0.201  Sum_probs=45.5

Q ss_pred             ceeeeeeeccccCC-ccchhhhccCc--ceeeccc----cCCCCccccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665          77 TPYLVLAKARFLLP-TLECQEVYHDG--RFYDYLD----NNFQTYDYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus        77 ~p~~v~~~~~~~~~-~~~~~~~~~~~--~~~~~~~----~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+|+|++++|+... ..+.++.+...  ...+.+.    ......+.+|+|||||..|+.+|..+.+.|. +|+++.
T Consensus       278 ~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~  354 (652)
T PRK12814        278 EFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILY  354 (652)
T ss_pred             hcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEee
Confidence            48999999997653 23333322111  1112221    1112245689999999999999999999996 699998

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=97.93  E-value=1.2e-05  Score=77.60  Aligned_cols=32  Identities=34%  Similarity=0.558  Sum_probs=30.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..+||+|||||..|+.+|+.|+++|++|+|+|
T Consensus        70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE  101 (627)
T PLN02464         70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVE  101 (627)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCCEEEEEe
Confidence            45899999999999999999999999999999

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=97.91  E-value=1.3e-05  Score=75.13  Aligned_cols=30  Identities=20%  Similarity=0.309  Sum_probs=28.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhC--CCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASM--NKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE  145 (296)
                      +||+|||||.+|+++|++|++.  |.+|+|+|
T Consensus         1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlE   32 (483)
T TIGR01320         1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIE   32 (483)
T ss_pred             CcEEEECchHHHHHHHHHHHHhCCCCeEEEEE
Confidence            5999999999999999999997  99999999

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=97.90  E-value=1e-05  Score=70.84  Aligned_cols=32  Identities=31%  Similarity=0.574  Sum_probs=27.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-CcEEEEecc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMN-KKVALFDFV  147 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE~~  147 (296)
                      ||+||||+|++|+.+|.+|++.| .+|+|+|++
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG   33 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAG   33 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESS
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcc
Confidence            79999999999999999999997 699999943

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.89  E-value=1.4e-05  Score=73.19  Aligned_cols=32  Identities=47%  Similarity=0.695  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      .+||+|||+|++|+.+|..++++|.+|+++|+
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~   33 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAK   33 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEEC
Confidence            57999999999999999999999999999993

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.89  E-value=6.4e-05  Score=65.20  Aligned_cols=45  Identities=33%  Similarity=0.525  Sum_probs=37.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVN  164 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~  164 (296)
                      ..+||+|||+|.+|+.+|.+|+.+|++|+|+|  +..+    ..+||+..+
T Consensus         4 ~~~dvivvgaglaglvaa~elA~aG~~V~ild--QEge----qnlGGQAfW   48 (552)
T COG3573           4 LTADVIVVGAGLAGLVAAAELADAGKRVLILD--QEGE----QNLGGQAFW   48 (552)
T ss_pred             ccccEEEECccHHHHHHHHHHHhcCceEEEEc--cccc----ccccceeee
Confidence            35699999999999999999999999999999  3321    177886544

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=97.88  E-value=1.5e-05  Score=72.95  Aligned_cols=38  Identities=34%  Similarity=0.626  Sum_probs=34.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--CcEEEEeccCCCCCCcccccCCee
Q psy7665         117 DLCVIGGGSGGISAAKEAASMN--KKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      .|+|||||.+||+||++|++++  .+++|+|  +.+      .+||..
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE--~~~------r~GG~l   41 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFE--ADD------RVGGLL   41 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEe--cCC------CCCceE
Confidence            5899999999999999999999  9999999  667      777754

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.88  E-value=0.0001  Score=68.86  Aligned_cols=31  Identities=19%  Similarity=0.359  Sum_probs=28.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      +..|+|||+|..|+.+|..+.+.|. +|+|++
T Consensus       282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~  313 (467)
T TIGR01318       282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAY  313 (467)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEE
Confidence            4689999999999999999999995 799999

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=97.88  E-value=1.8e-05  Score=74.12  Aligned_cols=32  Identities=25%  Similarity=0.574  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      +|+|||||.+|+++|++|++.|++|+|+|  +.+
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E--~~~   32 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYE--SRS   32 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEE--ecC
Confidence            58999999999999999999999999999  666

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.88  E-value=1.6e-05  Score=74.96  Aligned_cols=33  Identities=27%  Similarity=0.452  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      |||+|||+||+|+.+|+.|++.|++|++||  +..
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e--~~~   33 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVE--IGA   33 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEe--ccC
Confidence            699999999999999999999999999999  555

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.87  E-value=5.4e-05  Score=71.06  Aligned_cols=30  Identities=27%  Similarity=0.448  Sum_probs=28.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|+|||+|.+|+++|..|+++|++|+++|
T Consensus        17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d   46 (480)
T PRK01438         17 LRVVVAGLGVSGFAAADALLELGARVTVVD   46 (480)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence            379999999999999999999999999999

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=97.87  E-value=4.4e-05  Score=68.76  Aligned_cols=122  Identities=13%  Similarity=0.131  Sum_probs=68.5

Q ss_pred             CCcEEEEeccCCCCCCccccc--CCeeeccCCCchh-HH-HH------------hhhhHHHhhcccccCccccccCCHHH
Q psy7665         138 NKKVALFDFVTPSQHGTVWGL--GGTCVNVGCIPKK-LF-HR------------ASLLNEEATTSDNFGFHMKKSFTWKT  201 (296)
Q Consensus       138 G~~V~iiE~~~~~~~g~~~~~--GG~~~~~~~~p~~-~~-~~------------~~~~~~~~~~~~~~g~~~~~~~~~~~  201 (296)
                      |.+|+|+|  +++++|+|+.+  ||+|..+..-+.. .. .+            .....+.+.++...|+.....-+.. 
T Consensus         1 g~~V~ilE--kn~~~GkKil~TG~GRCN~TN~~~~~~~~~~~~~~~~fl~~al~~f~~~d~~~fF~~~Gi~~~~e~~gr-   77 (376)
T TIGR03862         1 GLEVDVFE--AKPSVGRKFLMAGKSGLNLTHSEPLPRFIERYGDAAEWLAPWLEAFDAVALQDWARGLGIETFVGSSGR-   77 (376)
T ss_pred             CCeEEEEe--CCCCccceeEEcCCCCcccCCCCchHHHHHhcCCchHHHHHHHHhCCHHHHHHHHHHCCCceEECCCCE-
Confidence            57899999  89999999888  6688554432211 11 11            0112223444555565432100000 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEE-EEeC--CEEEEcceeEEEEeCeEEEcCCCCC
Q psy7665         202 LVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAV-FVDK--HRVKFAGEERTVSAQNFIIAVGGRP  263 (296)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~--~~v~v~g~~~~~~a~~vV~AtG~~p  263 (296)
                      +. .....+.+....+...+++.||+++.+... .+.+  +.+.+..+...+.||+||+|||+.+
T Consensus        78 vf-P~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~~~~~~v~~~~~~~~~~a~~vIlAtGG~s  141 (376)
T TIGR03862        78 VF-PVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQGGTLRFETPDGQSTIEADAVVLALGGAS  141 (376)
T ss_pred             EC-CCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEeCCcEEEEECCCceEEecCEEEEcCCCcc
Confidence            00 011233445556677788899999876542 2322  3444432224689999999999864

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>KOG2755|consensus

Probab=97.86  E-value=4.9e-05  Score=63.69  Aligned_cols=29  Identities=31%  Similarity=0.654  Sum_probs=25.4

Q ss_pred             cEEEECCChHHHHHHHHHHhC--CCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASM--NKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE  145 (296)
                      +.+|||||.||.+||.+|+..  ..+++++.
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illit   31 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLIT   31 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEe
Confidence            368999999999999999976  56888887

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=97.85  E-value=2.5e-05  Score=72.99  Aligned_cols=33  Identities=9%  Similarity=0.201  Sum_probs=30.9

Q ss_pred             CccccEEEECCChHHHHHHHHHHhC--CCcEEEEe
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASM--NKKVALFD  145 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE  145 (296)
                      +..+||+|||||.+|+++|+.|++.  |.+|+|+|
T Consensus         4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlE   38 (497)
T PRK13339          4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVE   38 (497)
T ss_pred             CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEE
Confidence            3567999999999999999999998  89999999

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=97.84  E-value=2.1e-05  Score=73.76  Aligned_cols=32  Identities=19%  Similarity=0.379  Sum_probs=29.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC--CCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASM--NKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE  145 (296)
                      ..+||+|||||..|+++|++|++.  |.+|+|+|
T Consensus         4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlE   37 (494)
T PRK05257          4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFE   37 (494)
T ss_pred             ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEE
Confidence            457999999999999999999985  78999999

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=97.82  E-value=2.9e-05  Score=76.12  Aligned_cols=37  Identities=27%  Similarity=0.438  Sum_probs=33.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQH  152 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~  152 (296)
                      ...+|+|||||++|+.||++|++.|++|+|+|  +.+++
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E--~~~r~  273 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLE--GRARP  273 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEe--ccccC
Confidence            45699999999999999999999999999999  66644

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=97.81  E-value=3.3e-05  Score=72.61  Aligned_cols=39  Identities=15%  Similarity=0.257  Sum_probs=33.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhC----CCcEEEEeccCCCCCCcc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASM----NKKVALFDFVTPSQHGTV  155 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~----G~~V~iiE~~~~~~~g~~  155 (296)
                      ..+++|||||.+|++||.+|.+.    |.+|+|+|  +.+.+|.+
T Consensus        22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlE--k~~~~GG~   64 (576)
T PRK13977         22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILE--ELDVPGGS   64 (576)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEe--CCCCCCCC
Confidence            45899999999999999999995    68999999  77744443

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.78  E-value=0.00016  Score=64.48  Aligned_cols=32  Identities=25%  Similarity=0.150  Sum_probs=29.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-CcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMN-KKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE  145 (296)
                      ..+|++.||-||.-+..|..+.+.+ .+.+.+|
T Consensus         4 ~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLe   36 (436)
T COG3486           4 EVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLE   36 (436)
T ss_pred             cceeeEEEccCchHHHHHHHhccccCcceEEEe
Confidence            4679999999999999999999876 7899999

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.74  E-value=3.4e-05  Score=66.71  Aligned_cols=33  Identities=24%  Similarity=0.585  Sum_probs=30.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      +++||+|||||.+|++||..|+++|+++.|+.+
T Consensus         1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~   33 (421)
T COG3075           1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNR   33 (421)
T ss_pred             CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeC
Confidence            357999999999999999999999999999984

>PLN02487 zeta-carotene desaturase

Probab=97.72  E-value=4.2e-05  Score=72.74  Aligned_cols=37  Identities=24%  Similarity=0.492  Sum_probs=32.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHG  153 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g  153 (296)
                      ..+|+|||||++|+++|+.|+++|++|+|+|  +.+..|
T Consensus        75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E--~~~~~g  111 (569)
T PLN02487         75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYE--SRPFIG  111 (569)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeeEEEe--cCCCCC
Confidence            3599999999999999999999999999999  666333

>PLN02612 phytoene desaturase

Probab=97.71  E-value=4.4e-05  Score=72.98  Aligned_cols=35  Identities=26%  Similarity=0.387  Sum_probs=32.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      ...+|+|||||++|+++|++|++.|++|+|+|  +.+
T Consensus        92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e--~~~  126 (567)
T PLN02612         92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLE--ARD  126 (567)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEe--cCC
Confidence            45689999999999999999999999999999  555

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.69  E-value=0.00044  Score=67.40  Aligned_cols=31  Identities=19%  Similarity=0.368  Sum_probs=28.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      +.+|+|||||..|+.+|..+.++|. +|+++.
T Consensus       468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~  499 (654)
T PRK12769        468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAY  499 (654)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeE
Confidence            4589999999999999999999996 699998

>KOG0685|consensus

Probab=97.68  E-value=5.6e-05  Score=68.43  Aligned_cols=40  Identities=23%  Similarity=0.483  Sum_probs=33.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-CcEEEEeccCCCCCCcccccCCee
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMN-KKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      ..+|||||||.||++||.+|.+.| .+|+|+|  ..+      .+||+.
T Consensus        21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlE--a~d------RIGGRI   61 (498)
T KOG0685|consen   21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILE--ASD------RIGGRI   61 (498)
T ss_pred             CceEEEECCchHHHHHHHHHHHhCCceEEEEE--ecc------ccCceE
Confidence            348999999999999999999776 5899999  677      666653

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=0.0028  Score=55.66  Aligned_cols=126  Identities=22%  Similarity=0.232  Sum_probs=78.4

Q ss_pred             cceeeeeeeccccCCccchhhhc---c--CcceeeccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665          76 HTPYLVLAKARFLLPTLECQEVY---H--DGRFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus        76 ~~p~~v~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      +..++||+|+|...-.+..+...   .  .+++.. -+.  ...+.+|+|||||.+.+..|++|++.+.+|+++=  +.+
T Consensus       102 ~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~-cdg--~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~--r~~  176 (305)
T COG0492         102 YEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCAT-CDG--FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVH--RRD  176 (305)
T ss_pred             EEEeEEEECcCCcccCCCCCcchhhcCCceEEeee-cCc--cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEe--cCc
Confidence            55678999988655544433111   0  111111 111  1234499999999999999999999999999998  333


Q ss_pred             CCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CcEEE
Q psy7665         151 QHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKN-KIDYF  229 (296)
Q Consensus       151 ~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~  229 (296)
                                                                   .+..              ...+.+.+++. +++++
T Consensus       177 ---------------------------------------------~~ra--------------~~~~~~~l~~~~~i~~~  197 (305)
T COG0492         177 ---------------------------------------------EFRA--------------EEILVERLKKNVKIEVL  197 (305)
T ss_pred             ---------------------------------------------ccCc--------------CHHHHHHHHhcCCeEEE
Confidence                                                         0000              11223344444 77876


Q ss_pred             cceE-EEEeC---CEEEE-c--ceeEEEEeCeEEEcCCCCCCC
Q psy7665         230 NAKA-VFVDK---HRVKF-A--GEERTVSAQNFIIAVGGRPTY  265 (296)
Q Consensus       230 ~~~~-~~~~~---~~v~v-~--g~~~~~~a~~vV~AtG~~p~~  265 (296)
                      .+.. ..+..   ..+++ +  +++..+.++.|.++.|..|..
T Consensus       198 ~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~  240 (305)
T COG0492         198 TNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNT  240 (305)
T ss_pred             eCCceeEEecCccceEEEEecCCceEEEEeceEEEecCCCCch
Confidence            6533 32322   35555 3  556788999999999998875

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.66  E-value=0.00035  Score=70.97  Aligned_cols=92  Identities=12%  Similarity=0.004  Sum_probs=54.6

Q ss_pred             hHHHHHHHHHhhcCCC----Cceee-ccceeeeeeecccc-CCccchhhhcc--Ccceeecccc-------------CCC
Q psy7665          54 CAEAISLSWIKGYNIE----PEVIK-LHTPYLVLAKARFL-LPTLECQEVYH--DGRFYDYLDN-------------NFQ  112 (296)
Q Consensus        54 ~~e~l~v~~~~~~~~~----~~~~~-~~~p~~v~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~-------------~~~  112 (296)
                      +.+.+++.+++|+.+.    .+.+. ....|+||+++|+- +...++++...  .....+.+..             ...
T Consensus       489 ~l~~~Gv~~~~~~~vg~~~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~  568 (1006)
T PRK12775        489 RLVDIGVKIETNKVIGKTFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPI  568 (1006)
T ss_pred             HHHHCCCEEEeCCccCCccCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCc
Confidence            3444556655564332    22222 34589999999973 44444443221  1111111100             001


Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCCc-EEEEe
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASMNKK-VALFD  145 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~-V~iiE  145 (296)
                      ..+.+|+|||||..|+.+|..+.+.|.+ |+++.
T Consensus       569 ~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~  602 (1006)
T PRK12775        569 SLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVY  602 (1006)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEe
Confidence            2456899999999999999999999975 77777

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=97.66  E-value=5e-05  Score=73.15  Aligned_cols=33  Identities=30%  Similarity=0.393  Sum_probs=31.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ...+|+|||||++|+++|..|++.|.+|+|||+
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er  112 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEK  112 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEec
Confidence            456999999999999999999999999999994

>PLN03000 amine oxidase

Probab=97.66  E-value=5.9e-05  Score=74.18  Aligned_cols=35  Identities=20%  Similarity=0.433  Sum_probs=32.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      ...+|+|||||++|+.+|++|.+.|++|+|+|  ..+
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE--~~~  217 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLE--GRK  217 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEE--ccC
Confidence            34699999999999999999999999999999  666

>KOG4254|consensus

Probab=97.64  E-value=6.1e-05  Score=67.71  Aligned_cols=48  Identities=35%  Similarity=0.621  Sum_probs=41.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIP  169 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p  169 (296)
                      ..||++|||+|+.|+.||.+|++.|.+|+++|  +..      .+||...+...+|
T Consensus        13 ~~ydavvig~GhnGL~aaayl~r~g~~V~vle--rrh------v~gGaavteeivp   60 (561)
T KOG4254|consen   13 PEYDAVVIGGGHNGLTAAAYLARYGQSVAVLE--RRH------VIGGAAVTEEIVP   60 (561)
T ss_pred             cccceEEecCCccchhHHHHHHhcCcceEEEE--Eee------ecCcceeeehhcc
Confidence            57899999999999999999999999999999  555      7788776665555

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.62  E-value=0.00034  Score=62.61  Aligned_cols=32  Identities=19%  Similarity=0.268  Sum_probs=25.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      ....|+|||||.++.+.+..|.+.+.  +|.++-
T Consensus       189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~  222 (341)
T PF13434_consen  189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWIS  222 (341)
T ss_dssp             --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEE
T ss_pred             CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEE
Confidence            56799999999999999999999875  788888

>KOG2844|consensus

Probab=97.61  E-value=0.0023  Score=60.46  Aligned_cols=30  Identities=43%  Similarity=0.434  Sum_probs=26.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .||+|||||.+||.+|++|++.|.+..+++
T Consensus        40 A~vvViggG~~g~~~~yhlak~g~k~avll   69 (856)
T KOG2844|consen   40 ADVVVIGGGSLGCSTAYHLAKRGMKGAVLL   69 (856)
T ss_pred             ccEEEEcCCchhHHHHHHHHHccccceEEE
Confidence            599999999999999999999999854444

>PRK02106 choline dehydrogenase; Validated

Probab=97.60  E-value=6.2e-05  Score=72.03  Aligned_cols=34  Identities=29%  Similarity=0.471  Sum_probs=31.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHh-CCCcEEEEecc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAAS-MNKKVALFDFV  147 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~-~G~~V~iiE~~  147 (296)
                      ..||+||||+|++|+.+|.+|++ .|++|+|+|++
T Consensus         4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG   38 (560)
T PRK02106          4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAG   38 (560)
T ss_pred             CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCC
Confidence            45899999999999999999999 89999999944

>PLN02976 amine oxidase

Probab=97.57  E-value=0.0001  Score=75.50  Aligned_cols=35  Identities=23%  Similarity=0.419  Sum_probs=32.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      ..++|+|||||++|+.+|++|++.|++|+|+|  +.+
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlE--a~~  726 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLE--ARS  726 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHCCCcEEEEe--ecc
Confidence            45799999999999999999999999999999  666

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.54  E-value=0.00011  Score=68.48  Aligned_cols=35  Identities=40%  Similarity=0.616  Sum_probs=33.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      ..+||+|||||..|+-+|+.++.+|++|+|+|  +.+
T Consensus        11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE--~~D   45 (532)
T COG0578          11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVE--KGD   45 (532)
T ss_pred             cCCCEEEECCchhhHHHHHHHHhCCCeEEEEe--cCc
Confidence            67899999999999999999999999999999  665

>PRK13984 putative oxidoreductase; Provisional

Probab=97.51  E-value=0.00034  Score=67.60  Aligned_cols=70  Identities=21%  Similarity=0.241  Sum_probs=42.1

Q ss_pred             cceeeeeeeccccCC-ccchhhhccC--cceeeccc-------cC--CCCccccEEEECCChHHHHHHHHHHhCCC----
Q psy7665          76 HTPYLVLAKARFLLP-TLECQEVYHD--GRFYDYLD-------NN--FQTYDYDLCVIGGGSGGISAAKEAASMNK----  139 (296)
Q Consensus        76 ~~p~~v~~~~~~~~~-~~~~~~~~~~--~~~~~~~~-------~~--~~~~~~dVvVIGgG~aG~~aA~~l~~~G~----  139 (296)
                      ..+|++|+++|+..+ ..++++....  ....+.+.       ..  ......+|+|||||..|+.+|..+++.+.    
T Consensus       367 ~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g  446 (604)
T PRK13984        367 EKHDAVFLSTGFTLGRSTRIPGTDHPDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYG  446 (604)
T ss_pred             hcCCEEEEEcCcCCCccCCCCCcCCcCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccC
Confidence            468999999997532 2233322211  11111111       00  01124589999999999999999998753    


Q ss_pred             --cEEEEe
Q psy7665         140 --KVALFD  145 (296)
Q Consensus       140 --~V~iiE  145 (296)
                        +|+++.
T Consensus       447 ~~~V~v~~  454 (604)
T PRK13984        447 EVNVKVTS  454 (604)
T ss_pred             ceEEEEec
Confidence              677764

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=97.50  E-value=0.00011  Score=68.77  Aligned_cols=32  Identities=31%  Similarity=0.580  Sum_probs=29.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC--CcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMN--KKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE  145 (296)
                      ..+||+|||||..|+++|++|++.+  .+|+|+|
T Consensus        44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlE   77 (497)
T PTZ00383         44 DVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIE   77 (497)
T ss_pred             CcccEEEECccHHHHHHHHHHHhhCCCCEEEEEe
Confidence            5689999999999999999999963  6999999

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=97.48  E-value=0.00097  Score=63.17  Aligned_cols=69  Identities=17%  Similarity=0.136  Sum_probs=42.4

Q ss_pred             ceeeeeeeccccCC-ccc---hhhhc--cCccee-eccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665          77 TPYLVLAKARFLLP-TLE---CQEVY--HDGRFY-DYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus        77 ~p~~v~~~~~~~~~-~~~---~~~~~--~~~~~~-~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..|+|++++|.... ..|   .++.+  +...+. .-.+.+....+.+|+|||+|.+|+..|..|++...+|.+.-
T Consensus       138 ~fD~VvvatG~~~~P~~P~~~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~  213 (531)
T PF00743_consen  138 EFDAVVVATGHFSKPNIPEPSFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLST  213 (531)
T ss_dssp             EECEEEEEE-SSSCESB-----CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEEC
T ss_pred             EeCeEEEcCCCcCCCCCChhhhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEE
Confidence            46889999996321 111   22222  111110 00112223356799999999999999999999999998887

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>KOG2852|consensus

Probab=97.48  E-value=0.0025  Score=54.45  Aligned_cols=30  Identities=20%  Similarity=0.455  Sum_probs=28.5

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC------CcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMN------KKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G------~~V~iiE  145 (296)
                      .+|+|+|||..|+.+|++|++++      .+++|||
T Consensus        11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifE   46 (380)
T KOG2852|consen   11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFE   46 (380)
T ss_pred             eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEe
Confidence            58999999999999999999997      7899999

>KOG1276|consensus

Probab=97.43  E-value=0.00018  Score=64.44  Aligned_cols=35  Identities=31%  Similarity=0.552  Sum_probs=30.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcE--EEEeccCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKV--ALFDFVTPS  150 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V--~iiE~~~~~  150 (296)
                      ...+|+|+|||.+|+++|++|++++-++  +|+|  ..+
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~E--a~~   46 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFE--ASP   46 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcCCCceEEEEe--cCC
Confidence            4569999999999999999999998765  6699  777

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.36  E-value=0.0025  Score=62.02  Aligned_cols=32  Identities=19%  Similarity=0.312  Sum_probs=28.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+.+|+|||+|..|+.+|..+.+.|. +|++++
T Consensus       450 ~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~  482 (639)
T PRK12809        450 EGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAY  482 (639)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHcCCCeEEEee
Confidence            34689999999999999999999994 799998

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.31  E-value=0.00027  Score=61.29  Aligned_cols=36  Identities=33%  Similarity=0.440  Sum_probs=31.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCc
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGT  154 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~  154 (296)
                      .|-|||||.||.+||++++++|.+|.++|  +.+..++
T Consensus         5 ~i~VIGaGLAGSEAAwqiA~~Gv~V~L~E--MRp~k~T   40 (439)
T COG1206           5 PINVIGAGLAGSEAAWQIAKRGVPVILYE--MRPVKGT   40 (439)
T ss_pred             ceEEEcccccccHHHHHHHHcCCcEEEEE--cccccCC
Confidence            68899999999999999999999999999  6664443

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=97.31  E-value=0.0041  Score=56.78  Aligned_cols=35  Identities=23%  Similarity=0.448  Sum_probs=31.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC--CCcEEEEeccCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASM--NKKVALFDFVTPS  150 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~~~~~  150 (296)
                      ..+|||+||||..|.+.+..|++.  ..++.|+|  +.+
T Consensus         2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~E--rl~   38 (488)
T PF06039_consen    2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFE--RLD   38 (488)
T ss_pred             CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEE--ecC
Confidence            457999999999999999999987  47999999  555

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=97.29  E-value=0.00022  Score=67.84  Aligned_cols=34  Identities=24%  Similarity=0.430  Sum_probs=31.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEecc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFV  147 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~  147 (296)
                      ..+|+||||+|.+|+.+|.+|+..|++|+|+|.+
T Consensus         6 ~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG   39 (542)
T COG2303           6 MEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG   39 (542)
T ss_pred             CCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence            5689999999999999999999999999999944

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=97.26  E-value=0.00062  Score=55.93  Aligned_cols=69  Identities=16%  Similarity=0.164  Sum_probs=39.7

Q ss_pred             ccceeeeeeeccc--cCCccchhh-hccCcce--eeccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665          75 LHTPYLVLAKARF--LLPTLECQE-VYHDGRF--YDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus        75 ~~~p~~v~~~~~~--~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+..+.||+|+|.  .|..+..+. ... ..+  .+. .......+.+|+|||+|.+++.+|..|++.|.+|+++-
T Consensus       124 ~~~a~~VVlAtG~~~~p~~p~~~g~~~~-~~~h~~~~-~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~  197 (203)
T PF13738_consen  124 TIRADRVVLATGHYSHPRIPDIPGSAFR-PIIHSADW-RDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVT  197 (203)
T ss_dssp             EEEEEEEEE---SSCSB---S-TTGGCS-EEEEGGG--STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEE
T ss_pred             eeeeeeEEEeeeccCCCCcccccccccc-ceEehhhc-CChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEe
Confidence            4558899999995  332333333 111 111  111 11112245689999999999999999999999999998

...

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.24  E-value=0.00035  Score=63.66  Aligned_cols=31  Identities=39%  Similarity=0.642  Sum_probs=29.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      |||+|||||++|+.+|..+++.|++|+|+|+
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~   31 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAA   31 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCCEEEEeC
Confidence            5899999999999999999999999999993

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR01810 betA choline dehydrogenase

Probab=97.22  E-value=0.00029  Score=67.02  Aligned_cols=31  Identities=29%  Similarity=0.393  Sum_probs=29.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-CcEEEEecc
Q psy7665         117 DLCVIGGGSGGISAAKEAASMN-KKVALFDFV  147 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE~~  147 (296)
                      |+||||||.+|+.+|.+|++.| ++|+|+|++
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG   32 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAG   32 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecC
Confidence            7999999999999999999998 699999954

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>KOG2853|consensus

Probab=97.20  E-value=0.00046  Score=60.18  Aligned_cols=49  Identities=31%  Similarity=0.544  Sum_probs=37.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC----CCcEEEEeccCCC---CCCcccccCCeeec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASM----NKKVALFDFVTPS---QHGTVWGLGGTCVN  164 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~----G~~V~iiE~~~~~---~~g~~~~~GG~~~~  164 (296)
                      ..+||+|||||.+|.+.|+.|.++    |.+|+++|  +.+   +.-+-.++||.|-+
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVE--rddtytqssT~lSvGGi~QQ  140 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVE--RDDTYTQSSTMLSVGGICQQ  140 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEe--ccCcccccceeeeecceeee
Confidence            568999999999999999999764    79999999  333   22233456888854

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.14  E-value=0.0025  Score=63.63  Aligned_cols=82  Identities=18%  Similarity=0.079  Sum_probs=52.6

Q ss_pred             hhcCCCCceeeccceeeeeeeccc-cCCccchhhhccC--cceeecccc------------CCCCccccEEEECCChHHH
Q psy7665          64 KGYNIEPEVIKLHTPYLVLAKARF-LLPTLECQEVYHD--GRFYDYLDN------------NFQTYDYDLCVIGGGSGGI  128 (296)
Q Consensus        64 ~~~~~~~~~~~~~~p~~v~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~------------~~~~~~~dVvVIGgG~aG~  128 (296)
                      ++..+|.+.+....+|+|++++|+ .+...++++.+..  ....+.+..            .....+..|||||||..|+
T Consensus       484 lG~dit~edl~~~gyDAV~IATGA~kpr~L~IPGeda~GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAm  563 (1028)
T PRK06567        484 LDFNITKEQAFDLGFDHIAFCIGAGQPKVLDIENFEAKGVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSL  563 (1028)
T ss_pred             ECccCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCccCCCeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHH
Confidence            456678888878889999999998 4555555543321  111221111            0001245899999999999


Q ss_pred             HHHHHHHh---CCCcEEEEe
Q psy7665         129 SAAKEAAS---MNKKVALFD  145 (296)
Q Consensus       129 ~aA~~l~~---~G~~V~iiE  145 (296)
                      .+|..+..   .+..+.+.+
T Consensus       564 D~ArtAlr~~~l~ve~~l~~  583 (1028)
T PRK06567        564 DAATESLYYYKKQVEEFAKD  583 (1028)
T ss_pred             HHHHHHHhhccchhhHHHHh
Confidence            99986654   355666666

>PLN02785 Protein HOTHEAD

Probab=97.12  E-value=0.00049  Score=66.00  Aligned_cols=33  Identities=33%  Similarity=0.498  Sum_probs=30.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEecc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFV  147 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~  147 (296)
                      ..||+||||||.+||.+|.+|++ +.+|+|+|++
T Consensus        54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G   86 (587)
T PLN02785         54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERG   86 (587)
T ss_pred             ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecC
Confidence            46899999999999999999999 6999999944

>KOG2960|consensus

Probab=97.10  E-value=0.00016  Score=58.85  Aligned_cols=31  Identities=39%  Similarity=0.618  Sum_probs=27.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhC--CCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASM--NKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE  145 (296)
                      ..||+|||+|.+|+++|+.++++  ..+|.|+|
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE  108 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIE  108 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEE
Confidence            35999999999999999999865  58899999

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=97.05  E-value=0.012  Score=53.38  Aligned_cols=32  Identities=28%  Similarity=0.426  Sum_probs=28.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC-----CCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASM-----NKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~-----G~~V~iiE  145 (296)
                      ..+||++||+|++|+.+|+.++..     .+++.++|
T Consensus        17 ~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd   53 (486)
T COG2509          17 AALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVD   53 (486)
T ss_pred             hccceEEECCCchHHHHHHHHhhhcccCCceEEEEEE
Confidence            568999999999999999999864     57899999

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.89  E-value=0.01  Score=52.20  Aligned_cols=33  Identities=36%  Similarity=0.658  Sum_probs=30.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      .+.||+|||||.+|.+||.-|+-.=..|+++|+
T Consensus       353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF  385 (520)
T COG3634         353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEF  385 (520)
T ss_pred             CCceEEEECCCcchHHHHHhHHhhhheeeeeec
Confidence            567999999999999999999988889999993

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.87  E-value=0.0039  Score=58.00  Aligned_cols=31  Identities=32%  Similarity=0.463  Sum_probs=29.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +.+|+|+|+|..|+.+|..|++.|++|+++|
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d   35 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTD   35 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence            3479999999999999999999999999999

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=96.84  E-value=0.0011  Score=58.09  Aligned_cols=33  Identities=33%  Similarity=0.505  Sum_probs=28.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      ..+|+|||+|.+|++||+.|++ -++|+++|  ...
T Consensus         8 r~~IAVIGsGisGLSAA~~Ls~-rhdVTLfE--A~~   40 (447)
T COG2907           8 RRKIAVIGSGISGLSAAWLLSR-RHDVTLFE--ADR   40 (447)
T ss_pred             CcceEEEcccchhhhhHHhhhc-ccceEEEe--ccc
Confidence            3489999999999999999876 48999999  666

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=96.84  E-value=0.0044  Score=56.48  Aligned_cols=28  Identities=29%  Similarity=0.646  Sum_probs=23.9

Q ss_pred             EEEECCChHHHHHHHHHHhCC--CcEEEEe
Q psy7665         118 LCVIGGGSGGISAAKEAASMN--KKVALFD  145 (296)
Q Consensus       118 VvVIGgG~aG~~aA~~l~~~G--~~V~iiE  145 (296)
                      ++|||+|++|+.+|..+++..  .+++++.
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~   30 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIG   30 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCCCCCEEEEe
Confidence            589999999999999988854  5787777

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.80  E-value=0.0049  Score=57.54  Aligned_cols=29  Identities=34%  Similarity=0.350  Sum_probs=28.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|+|||.|++|+++|..|+++|++|+++|
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D   30 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSD   30 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEEC
Confidence            58999999999999999999999999999

>KOG0042|consensus

Probab=96.75  E-value=0.0024  Score=58.93  Aligned_cols=35  Identities=34%  Similarity=0.591  Sum_probs=32.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      ..+||+|||||..|.-||+-++-+|++|.++|  ..+
T Consensus        66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE--~~D  100 (680)
T KOG0042|consen   66 HEFDVLIIGGGATGAGCALDAATRGLKTALVE--AGD  100 (680)
T ss_pred             CcccEEEECCCccCcceeehhhcccceeEEEe--ccc
Confidence            56899999999999999999999999999999  555

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.70  E-value=0.0095  Score=57.17  Aligned_cols=134  Identities=19%  Similarity=0.184  Sum_probs=67.4

Q ss_pred             HHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeecc-----CCCch-----------------hHHHHhhhhHHHhhc
Q psy7665         128 ISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNV-----GCIPK-----------------KLFHRASLLNEEATT  185 (296)
Q Consensus       128 ~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~-----~~~p~-----------------~~~~~~~~~~~~~~~  185 (296)
                      +.||+.+++.|.+|+|+||.....-++.+.-||.....     ...+.                 .+........+.+.+
T Consensus         1 l~AAl~aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~~Ds~e~~~~D~~~~g~~~~d~~~v~~l~~~a~~~i~~   80 (570)
T PRK05675          1 MRAALQLAQGGHKTAVVTKVFPTRSHTVSAQGGITCAIASADPNDDWRWHMYDTVKGSDYIGDQDAIEYMCSVGPEAVFE   80 (570)
T ss_pred             ChhHHhHHhcCCcEEEEEcCCCCCchHHHhhhhhhcccCCCCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence            46899999999999999943221111122223322111     11111                 111122334556677


Q ss_pred             ccccCccccccCCH----HHHHHH----------------HHHHHHHHHHHHHHHHHHCCcEEEcceE--EEE-e-CCEE
Q psy7665         186 SDNFGFHMKKSFTW----KTLVDN----------------VQKYIRNLNNNYEKELEKNKIDYFNAKA--VFV-D-KHRV  241 (296)
Q Consensus       186 ~~~~g~~~~~~~~~----~~~~~~----------------~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~-~-~~~v  241 (296)
                      +..+|++++...+.    .....+                ....-..+...+.+.+.+.+++++....  ..+ + +..|
T Consensus        81 L~~~Gv~F~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~~~tG~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v  160 (570)
T PRK05675         81 LEHMGLPFSRTETGRIYQRPFGGQSKDFGKGGQAARTCAAADRTGHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAV  160 (570)
T ss_pred             HHHcCCccccCCCCceeecccCccccccccCCccceEEecCCCCHHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeE
Confidence            77788877531110    000000                0001123344455556667999887643  222 2 2232


Q ss_pred             ---EE----cceeEEEEeCeEEEcCCC
Q psy7665         242 ---KF----AGEERTVSAQNFIIAVGG  261 (296)
Q Consensus       242 ---~v----~g~~~~~~a~~vV~AtG~  261 (296)
                         ..    ++....+.|+.||+|||.
T Consensus       161 ~Gv~~~~~~~g~~~~i~AkaVVLATGG  187 (570)
T PRK05675        161 VGVIAICIETGETVYIKSKATVLATGG  187 (570)
T ss_pred             EEEEEEEcCCCcEEEEecCeEEECCCC
Confidence               22    354567899999999996

>KOG2665|consensus

Probab=96.66  E-value=0.0015  Score=56.55  Aligned_cols=38  Identities=34%  Similarity=0.561  Sum_probs=32.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC--CCcEEEEeccCCCCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASM--NKKVALFDFVTPSQHG  153 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~~~~~~~g  153 (296)
                      ..||.||||||.+|++.|++|.-+  +.+|.|+|  +..+.+
T Consensus        47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vle--ke~~la   86 (453)
T KOG2665|consen   47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLE--KEKSLA   86 (453)
T ss_pred             ccccEEEECCceeehhhhHHHhhcCCCceEEeee--hhhhhc
Confidence            578999999999999999999877  89999999  555333

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.63  E-value=0.012  Score=52.75  Aligned_cols=24  Identities=38%  Similarity=0.542  Sum_probs=19.8

Q ss_pred             cceeEEEEeCeEEEcCCCCCCCCC
Q psy7665         244 AGEERTVSAQNFIIAVGGRPTYPD  267 (296)
Q Consensus       244 ~g~~~~~~a~~vV~AtG~~p~~p~  267 (296)
                      .++..++..|.||+|||.+...|.
T Consensus       321 ~~~~~t~~~D~vIlATGY~~~~P~  344 (436)
T COG3486         321 TGELETVETDAVILATGYRRAVPS  344 (436)
T ss_pred             CCCceEEEeeEEEEecccccCCch
Confidence            455678899999999999877774

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=96.50  E-value=0.062  Score=51.59  Aligned_cols=69  Identities=20%  Similarity=0.209  Sum_probs=42.6

Q ss_pred             ceeeeeeeccccCCcc-chhhhccCc--ceeecccc----CCCCccccEEEECCChHHHHHHHHHHhCC-CcEEEEe
Q psy7665          77 TPYLVLAKARFLLPTL-ECQEVYHDG--RFYDYLDN----NFQTYDYDLCVIGGGSGGISAAKEAASMN-KKVALFD  145 (296)
Q Consensus        77 ~p~~v~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~----~~~~~~~dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE  145 (296)
                      .+|.|+.++|...... .........  ...+++..    ........|+|||+|..|+.+|..+.+.| .+|+|+.
T Consensus       222 ~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~  298 (564)
T PRK12771        222 EFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVY  298 (564)
T ss_pred             hCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEE
Confidence            4789999999654321 221111111  11111110    11123568999999999999999999998 6788888

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=96.46  E-value=0.0041  Score=57.22  Aligned_cols=42  Identities=26%  Similarity=0.343  Sum_probs=33.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeee
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCV  163 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~  163 (296)
                      ..|||+|+|.|..-+..|..|++.|++|+-+|  +++      .-||.|.
T Consensus         3 ~~yDviI~GTGl~esila~als~~GkkVLhiD--~n~------yYGg~~a   44 (438)
T PF00996_consen    3 EEYDVIILGTGLTESILAAALSRSGKKVLHID--RND------YYGGEWA   44 (438)
T ss_dssp             SBESEEEE--SHHHHHHHHHHHHTT--EEEE---SSS------SSCGGG-
T ss_pred             ccceEEEECCCcHHHHHHHHHHhcCCEEEecC--CCC------CcCCchh
Confidence            57999999999999999999999999999999  777      8899873

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>KOG1238|consensus

Probab=96.31  E-value=0.0038  Score=58.99  Aligned_cols=33  Identities=33%  Similarity=0.538  Sum_probs=30.4

Q ss_pred             CccccEEEECCChHHHHHHHHHHhC-CCcEEEEe
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASM-NKKVALFD  145 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~-G~~V~iiE  145 (296)
                      ...||.+|||||.|||..|.+|++. ..+|+|+|
T Consensus        55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLE   88 (623)
T KOG1238|consen   55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLE   88 (623)
T ss_pred             ccCCCEEEECCCchhHHHHHhhccCCCceEEEEe
Confidence            4679999999999999999999987 58999999

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.15  E-value=0.0068  Score=47.89  Aligned_cols=29  Identities=31%  Similarity=0.464  Sum_probs=28.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||||..|.++|..|+++|++|.++.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~   29 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWG   29 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEET
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEe
Confidence            58999999999999999999999999999

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>KOG3855|consensus

Probab=96.10  E-value=0.0062  Score=54.56  Aligned_cols=32  Identities=41%  Similarity=0.706  Sum_probs=28.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC----CCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASM----NKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~----G~~V~iiE  145 (296)
                      ..|||+|+||||+|...|..|...    .++|.|+|
T Consensus        35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld   70 (481)
T KOG3855|consen   35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLD   70 (481)
T ss_pred             ccCCEEEECCchHHHHHHHHhccCCccchheeeEEe
Confidence            478999999999999999999854    46899999

>KOG1346|consensus

Probab=96.08  E-value=0.02  Score=51.52  Aligned_cols=46  Identities=20%  Similarity=0.271  Sum_probs=29.9

Q ss_pred             HHHHHHCCcEEEcceEEE---EeCCEE--EE-cceeEEEEeCeEEEcCCCCCCC
Q psy7665         218 EKELEKNKIDYFNAKAVF---VDKHRV--KF-AGEERTVSAQNFIIAVGGRPTY  265 (296)
Q Consensus       218 ~~~~~~~~v~~~~~~~~~---~~~~~v--~v-~g~~~~~~a~~vV~AtG~~p~~  265 (296)
                      ...+++.||.++.+....   .....+  .. +|  .++..|.||+|+|-.|+.
T Consensus       400 ~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG--~~l~tD~vVvavG~ePN~  451 (659)
T KOG1346|consen  400 IEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDG--SELRTDLVVVAVGEEPNS  451 (659)
T ss_pred             HHHHHhcCceeccchhhhhhhhhccceEEEecCC--CeeeeeeEEEEecCCCch
Confidence            344566788887653311   122223  33 67  789999999999988765

>PLN02852 ferredoxin-NADP+ reductase

Probab=96.03  E-value=0.00047  Score=64.41  Aligned_cols=71  Identities=8%  Similarity=-0.048  Sum_probs=43.0

Q ss_pred             cCCCCceeeccceeeeeeeccccCC-ccchhhhcc--Ccceeecc---cc-------C-CCCccccEEEECCChHHHHHH
Q psy7665          66 YNIEPEVIKLHTPYLVLAKARFLLP-TLECQEVYH--DGRFYDYL---DN-------N-FQTYDYDLCVIGGGSGGISAA  131 (296)
Q Consensus        66 ~~~~~~~~~~~~p~~v~~~~~~~~~-~~~~~~~~~--~~~~~~~~---~~-------~-~~~~~~dVvVIGgG~aG~~aA  131 (296)
                      ..++.+.+.. .+|+||+++|..+. ..++++...  .....+++   ..       . ....+.+|+|||+|.+|+.+|
T Consensus       104 ~dvtl~~L~~-~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~A  182 (491)
T PLN02852        104 RDVSLSELRD-LYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCA  182 (491)
T ss_pred             ccccHHHHhh-hCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHH
Confidence            4455666653 69999999998653 333333221  11111111   00       0 011345899999999999999


Q ss_pred             HHHHhC
Q psy7665         132 KEAASM  137 (296)
Q Consensus       132 ~~l~~~  137 (296)
                      ..|.+.
T Consensus       183 r~L~~~  188 (491)
T PLN02852        183 RILLRP  188 (491)
T ss_pred             HHHHhC
Confidence            999886

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.00  E-value=0.0085  Score=48.72  Aligned_cols=29  Identities=31%  Similarity=0.357  Sum_probs=25.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||.|..|+.+|..+++.|++|+.+|
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D   30 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVD   30 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEe
Confidence            69999999999999999999999999999

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=95.70  E-value=0.022  Score=52.85  Aligned_cols=69  Identities=20%  Similarity=0.198  Sum_probs=45.7

Q ss_pred             cceeeeeeecccc--CCccchhhhc--cCcce--eeccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665          76 HTPYLVLAKARFL--LPTLECQEVY--HDGRF--YDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus        76 ~~p~~v~~~~~~~--~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +.++.|++++|..  |-.+...+.+  +...+  .+. .......+.+|+|||+|.+|+..|..|++.|.+|+++=
T Consensus       131 ~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~HS~~~-~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~q  205 (443)
T COG2072         131 LTADFVVVATGHLSEPYIPDFAGLDEFKGRILHSADW-PNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQ  205 (443)
T ss_pred             EecCEEEEeecCCCCCCCCCCCCccCCCceEEchhcC-CCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEe
Confidence            5589999999962  2222222211  11111  111 11223356799999999999999999999999999998

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=95.70  E-value=0.0088  Score=56.26  Aligned_cols=70  Identities=16%  Similarity=0.129  Sum_probs=44.3

Q ss_pred             cceeeeeeecccc-CCccchhhhcc--Ccceeecc--------cc------CCCCccccEEEECCChHHHHHHHHHHhCC
Q psy7665          76 HTPYLVLAKARFL-LPTLECQEVYH--DGRFYDYL--------DN------NFQTYDYDLCVIGGGSGGISAAKEAASMN  138 (296)
Q Consensus        76 ~~p~~v~~~~~~~-~~~~~~~~~~~--~~~~~~~~--------~~------~~~~~~~dVvVIGgG~aG~~aA~~l~~~G  138 (296)
                      ..+|+|++++|.. +..+++++...  .....+.+        ..      ........|+|||||..|+.+|..+.+.|
T Consensus       227 ~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~g  306 (485)
T TIGR01317       227 EQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHG  306 (485)
T ss_pred             hhCCEEEEccCCCCCCcCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcC
Confidence            4689999999986 33344333221  11111110        00      00123468999999999999998888887


Q ss_pred             -CcEEEEe
Q psy7665         139 -KKVALFD  145 (296)
Q Consensus       139 -~~V~iiE  145 (296)
                       .+|+++|
T Consensus       307 a~~V~vv~  314 (485)
T TIGR01317       307 AASVHQFE  314 (485)
T ss_pred             CCEEEEEE
Confidence             4799999

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=95.64  E-value=0.016  Score=46.85  Aligned_cols=29  Identities=34%  Similarity=0.477  Sum_probs=26.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||+|..|...|..++..|++|+++|
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d   29 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYD   29 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEE
Confidence            48999999999999999999999999999

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.61  E-value=0.017  Score=48.47  Aligned_cols=29  Identities=34%  Similarity=0.550  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +++|||+|..|...|..|.+.|++|+++|
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id   30 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLID   30 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEE
Confidence            69999999999999999999999999999

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=95.58  E-value=0.013  Score=53.48  Aligned_cols=30  Identities=23%  Similarity=0.371  Sum_probs=26.2

Q ss_pred             hHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665         125 SGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       125 ~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      .|||+||++|+++|++|+|+|  +.+      .+||.+
T Consensus         1 iaGL~aA~~L~~~G~~v~vlE--a~~------r~GGr~   30 (450)
T PF01593_consen    1 IAGLAAAYYLAKAGYDVTVLE--ASD------RVGGRI   30 (450)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEE--SSS------SSBTTS
T ss_pred             ChHHHHHHHHHhCCCCEEEEE--cCC------CCCcce
Confidence            489999999999999999999  777      666654

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=95.56  E-value=0.01  Score=43.25  Aligned_cols=31  Identities=23%  Similarity=0.328  Sum_probs=28.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..|+|||||.+|..-+..|.+.|.+|+|+.
T Consensus         7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis   37 (103)
T PF13241_consen    7 GKRVLVVGGGPVAARKARLLLEAGAKVTVIS   37 (103)
T ss_dssp             T-EEEEEEESHHHHHHHHHHCCCTBEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEC
Confidence            4589999999999999999999999999998

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.45  E-value=0.023  Score=44.28  Aligned_cols=28  Identities=29%  Similarity=0.387  Sum_probs=27.2

Q ss_pred             EEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         118 LCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       118 VvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      |+|+|+|..|+..|.+|++.|++|.++.
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~   28 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVS   28 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEE
Confidence            6899999999999999999999999999

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.41  E-value=0.023  Score=46.99  Aligned_cols=30  Identities=17%  Similarity=0.323  Sum_probs=28.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..|+|||||.+|...+..|.+.|.+|+|++
T Consensus        10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvs   39 (205)
T TIGR01470        10 RAVLVVGGGDVALRKARLLLKAGAQLRVIA   39 (205)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCEEEEEc
Confidence            489999999999999999999999999998

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.37  E-value=0.026  Score=44.60  Aligned_cols=31  Identities=19%  Similarity=0.258  Sum_probs=29.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..|+|||||.+|..-+..|.+.|.+|+|+.
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            4489999999999999999999999999997

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=95.22  E-value=0.062  Score=47.36  Aligned_cols=29  Identities=21%  Similarity=0.337  Sum_probs=26.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|+|+|..|+..|++|++.|.+|+++-
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~   30 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLV   30 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEe
Confidence            68999999999999999999997787776

>KOG0399|consensus

Probab=95.18  E-value=0.0041  Score=62.09  Aligned_cols=109  Identities=15%  Similarity=0.104  Sum_probs=64.3

Q ss_pred             hHHHHHHHHHhhcCCCCc----eeeccceeeeeeeccccCCcc-chhhhccC--cc------------eeeccccC-CCC
Q psy7665          54 CAEAISLSWIKGYNIEPE----VIKLHTPYLVLAKARFLLPTL-ECQEVYHD--GR------------FYDYLDNN-FQT  113 (296)
Q Consensus        54 ~~e~l~v~~~~~~~~~~~----~~~~~~p~~v~~~~~~~~~~~-~~~~~~~~--~~------------~~~~~~~~-~~~  113 (296)
                      +.+.-++.+..|+++-..    .+++ .-|+|+.++|+..+.+ +.++.+..  ..            +.+.++.. ...
T Consensus      1844 ll~~egi~f~tn~eigk~vs~d~l~~-~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~ 1922 (2142)
T KOG0399|consen 1844 LLEQEGIRFVTNTEIGKHVSLDELKK-ENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISA 1922 (2142)
T ss_pred             HHHhhCceEEeeccccccccHHHHhh-ccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceecc
Confidence            445556666677766443    2332 3589999999866643 33332211  11            11111111 012


Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCC-cEEEEeccCCCCCCcccccCCeeecc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNK-KVALFDFVTPSQHGTVWGLGGTCVNV  165 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE~~~~~~~g~~~~~GG~~~~~  165 (296)
                      .+.+|+|||||-.|-.|--..-++|. +|.-+|  -.+.++..-..+-.|..+
T Consensus      1923 ~gkkvivigggdtg~dcigtsvrhg~~sv~n~e--llp~pp~~ra~~npwpqw 1973 (2142)
T KOG0399|consen 1923 KGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFE--LLPQPPPERAPDNPWPQW 1973 (2142)
T ss_pred             CCCeEEEECCCCccccccccchhhccceeccee--ecCCCCcccCCCCCCccC
Confidence            46799999999999998888888884 678888  555555544555556444

>KOG0404|consensus

Probab=95.08  E-value=0.19  Score=41.66  Aligned_cols=70  Identities=19%  Similarity=0.068  Sum_probs=44.2

Q ss_pred             cceeeeeeeccccCCccchhhh-ccCcceeecc-----ccC-CCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665          76 HTPYLVLAKARFLLPTLECQEV-YHDGRFYDYL-----DNN-FQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus        76 ~~p~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~-~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ...|+||.++|+......-++. +...|-..+-     +.. +...+.-.+|||||-+.|+-|.+|.+-+.+|-|+-
T Consensus       111 v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~  187 (322)
T KOG0404|consen  111 VTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIH  187 (322)
T ss_pred             eeeeeEEEecccceeeeecCCCCcchHHhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEE
Confidence            4568999998865444333222 1111111000     000 01233468999999999999999999999999998

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.01  E-value=0.061  Score=50.23  Aligned_cols=30  Identities=30%  Similarity=0.411  Sum_probs=28.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|+|+|.|.+|+.+|..|++.|++|++.|
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D   44 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFD   44 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHHCCCEEEEEC
Confidence            379999999999999999999999999999

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=94.99  E-value=0.038  Score=45.61  Aligned_cols=31  Identities=13%  Similarity=0.264  Sum_probs=29.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..|+|||||-.|...+..|.+.|.+|+|++
T Consensus        10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs   40 (202)
T PRK06718         10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVIS   40 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEc
Confidence            3489999999999999999999999999998

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=94.97  E-value=0.039  Score=44.06  Aligned_cols=30  Identities=30%  Similarity=0.380  Sum_probs=27.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..|+|+|+|.+|..|+..+...|.+|+++|
T Consensus        21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d   50 (168)
T PF01262_consen   21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPD   50 (168)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHTT-EEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHhHCCCEEEecc
Confidence            589999999999999999999999999999

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=94.86  E-value=0.041  Score=47.35  Aligned_cols=31  Identities=35%  Similarity=0.535  Sum_probs=29.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-CcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMN-KKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE  145 (296)
                      ...|+|||+|.+|+++|..|++.| .+++|+|
T Consensus        30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD   61 (268)
T PRK15116         30 DAHICVVGIGGVGSWAAEALARTGIGAITLID   61 (268)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEe
Confidence            458999999999999999999999 6899999

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=94.84  E-value=0.23  Score=45.77  Aligned_cols=47  Identities=17%  Similarity=0.275  Sum_probs=30.2

Q ss_pred             HHHHHHHHCCcEEEcceEEE-E--eCCEEEE----cceeEEEEeCeEEEcCCCC
Q psy7665         216 NYEKELEKNKIDYFNAKAVF-V--DKHRVKF----AGEERTVSAQNFIIAVGGR  262 (296)
Q Consensus       216 ~~~~~~~~~~v~~~~~~~~~-~--~~~~v~v----~g~~~~~~a~~vV~AtG~~  262 (296)
                      .+...+++.|++++.+.... .  ....+..    +++...+.+|.||+|+|..
T Consensus       264 aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf  317 (422)
T PRK05329        264 ALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSF  317 (422)
T ss_pred             HHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence            34566677799988764322 1  2333332    3445678999999999964

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=94.83  E-value=0.21  Score=48.07  Aligned_cols=49  Identities=18%  Similarity=0.329  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHCCcEEEcceE--EEE-eCCEEE---E----cceeEEEEeCeEEEcCCC
Q psy7665         213 LNNNYEKELEKNKIDYFNAKA--VFV-DKHRVK---F----AGEERTVSAQNFIIAVGG  261 (296)
Q Consensus       213 ~~~~~~~~~~~~~v~~~~~~~--~~~-~~~~v~---v----~g~~~~~~a~~vV~AtG~  261 (296)
                      +...+...+++.+|+++....  ..+ ++..|.   .    ++....+.|+.||+|||.
T Consensus       121 i~~~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG  179 (565)
T TIGR01816       121 ILHTLYQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGG  179 (565)
T ss_pred             HHHHHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCC
Confidence            344455656677999877643  122 233322   1    344467899999999996

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.48  E-value=0.05  Score=48.84  Aligned_cols=29  Identities=28%  Similarity=0.420  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ++.|||.|.+|+..|..+++.|++|+.+|
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vD   30 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVD   30 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEe
Confidence            68999999999999999999999999999

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=94.42  E-value=0.037  Score=47.96  Aligned_cols=31  Identities=35%  Similarity=0.561  Sum_probs=29.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .-+|+|||||.+|..+|.-+...|.+|+++|
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild  198 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILD  198 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCCeeEEEe
Confidence            3489999999999999999999999999999

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=94.36  E-value=0.063  Score=47.30  Aligned_cols=30  Identities=27%  Similarity=0.148  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      +|+|||+|..|...|.+|++.|.+|+++.+
T Consensus         4 ~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r   33 (305)
T PRK05708          4 TWHILGAGSLGSLWACRLARAGLPVRLILR   33 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCeEEEEe
Confidence            799999999999999999999999999993

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=94.33  E-value=0.058  Score=41.30  Aligned_cols=30  Identities=33%  Similarity=0.461  Sum_probs=27.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      ..|+|+|+|..|.+.|..|++.|. +++|+|
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD   33 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVD   33 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHHTTSEEEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCceeecC
Confidence            479999999999999999999997 799999

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>KOG3923|consensus

Probab=94.32  E-value=0.25  Score=42.75  Aligned_cols=30  Identities=30%  Similarity=0.387  Sum_probs=26.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-------CcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMN-------KKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G-------~~V~iiE  145 (296)
                      .+|+|||+|..||++|..+.+.+       .+|++++
T Consensus         4 ~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~   40 (342)
T KOG3923|consen    4 PRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVIS   40 (342)
T ss_pred             ccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEec
Confidence            48999999999999999988854       4688887

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.28  E-value=0.058  Score=47.57  Aligned_cols=29  Identities=31%  Similarity=0.387  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||+|..|...|..|++.|++|+++|
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d   32 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWD   32 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEe
Confidence            69999999999999999999999999999

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=94.26  E-value=0.13  Score=47.64  Aligned_cols=36  Identities=14%  Similarity=0.268  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHHhC----CCcEEEEeccCCCCCCc
Q psy7665         117 DLCVIGGGSGGISAAKEAASM----NKKVALFDFVTPSQHGT  154 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~----G~~V~iiE~~~~~~~g~  154 (296)
                      ++=|||+|.|+|+||.+|-+-    |.+++|+|  ..+.+|.
T Consensus         4 ~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE--~~~~~GG   43 (500)
T PF06100_consen    4 KAYIVGSGIASLAAAVFLIRDAKMPGENIHILE--ELDVPGG   43 (500)
T ss_pred             eEEEECCCHHHHHhhhhhhccCCCCccceEEEe--CCCCCCC
Confidence            678999999999999999886    56999999  6773333

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=94.24  E-value=0.064  Score=47.07  Aligned_cols=29  Identities=17%  Similarity=0.322  Sum_probs=28.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|+|||+|..|+..|..|++.|++|++++
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~   30 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLV   30 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEe
Confidence            58999999999999999999999999999

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.12  E-value=0.071  Score=46.52  Aligned_cols=29  Identities=28%  Similarity=0.375  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||+|..|...|..+++.|++|+++|
T Consensus         5 kIaViGaG~mG~~iA~~la~~G~~V~l~d   33 (287)
T PRK08293          5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYD   33 (287)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCeEEEEe
Confidence            79999999999999999999999999999

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.93  E-value=0.081  Score=46.16  Aligned_cols=29  Identities=31%  Similarity=0.324  Sum_probs=28.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||+|..|...|..+++.|++|+++|
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d   31 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVD   31 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEe
Confidence            69999999999999999999999999999

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=93.92  E-value=0.072  Score=40.97  Aligned_cols=28  Identities=29%  Similarity=0.412  Sum_probs=26.1

Q ss_pred             EEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         118 LCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       118 VvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ++|+|+|+.+...+..++..|++|+++|
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d   28 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVD   28 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEE
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEc
Confidence            5899999999999999999999999999

>PRK04148 hypothetical protein; Provisional

Probab=93.89  E-value=0.062  Score=41.01  Aligned_cols=29  Identities=21%  Similarity=0.169  Sum_probs=27.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .++++||.| .|...|..|++.|++|+.+|
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaID   46 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVID   46 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEE
Confidence            479999999 99999999999999999999

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=93.87  E-value=0.078  Score=49.89  Aligned_cols=31  Identities=35%  Similarity=0.523  Sum_probs=29.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..+|+|+|+|++|+.++..++..|.+|+++|
T Consensus       165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D  195 (509)
T PRK09424        165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFD  195 (509)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEe
Confidence            4589999999999999999999999999999

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=93.83  E-value=0.092  Score=43.24  Aligned_cols=31  Identities=26%  Similarity=0.285  Sum_probs=28.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      ..+|+|||+|-.|...|..|++.|. +++++|
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD   52 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVD   52 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEC
Confidence            3489999999999999999999998 699999

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>KOG4405|consensus

Probab=93.76  E-value=0.079  Score=47.66  Aligned_cols=43  Identities=23%  Similarity=0.326  Sum_probs=38.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVN  164 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~  164 (296)
                      ..+||||||.|..=...|...++.|.+|+=+|  +++      ..||.|..
T Consensus         7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlD--sn~------yYGg~waS   49 (547)
T KOG4405|consen    7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLD--SNE------YYGGNWAS   49 (547)
T ss_pred             hhccEEEEcCCCcHHHHHHHhhhcCCceEecc--Ccc------ccCCcccc
Confidence            56899999999999889999999999999999  777      88998853

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=93.75  E-value=0.09  Score=46.06  Aligned_cols=29  Identities=21%  Similarity=0.321  Sum_probs=28.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|+|||+|..|...|..|++.|++|++++
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~   30 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVA   30 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence            58999999999999999999999999999

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.75  E-value=0.089  Score=45.92  Aligned_cols=29  Identities=28%  Similarity=0.442  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .|.|||+|..|...|..++..|++|+++|
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d   35 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARAGVDVLVFE   35 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEE
Confidence            79999999999999999999999999999

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.64  E-value=0.097  Score=46.39  Aligned_cols=30  Identities=23%  Similarity=0.276  Sum_probs=28.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..|.|||+|..|...|..++..|++|+++|
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D   37 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWD   37 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEe
Confidence            369999999999999999999999999999

>KOG1399|consensus

Probab=93.63  E-value=0.14  Score=47.54  Aligned_cols=136  Identities=11%  Similarity=-0.002  Sum_probs=75.0

Q ss_pred             CCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCC--------ChHHHH----------H--HHHHhhc---
Q psy7665          10 EVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHP--------TCAEAI----------S--LSWIKGY---   66 (296)
Q Consensus        10 ~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~p--------t~~e~l----------~--v~~~~~~---   66 (296)
                      +++.|=|....-+..++......-.+..+.+|+-+.-.-+++|        +..|.+          +  ..+++++   
T Consensus        37 r~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~  116 (448)
T KOG1399|consen   37 RTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVV  116 (448)
T ss_pred             ecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEE
Confidence            3556666666666666454444666677777776655444443        332221          1  1223333   


Q ss_pred             CCCCce--------------eeccceeeeeeeccccC-C-ccchhh----hccCcceeecc-ccCCCCccccEEEECCCh
Q psy7665          67 NIEPEV--------------IKLHTPYLVLAKARFLL-P-TLECQE----VYHDGRFYDYL-DNNFQTYDYDLCVIGGGS  125 (296)
Q Consensus        67 ~~~~~~--------------~~~~~p~~v~~~~~~~~-~-~~~~~~----~~~~~~~~~~~-~~~~~~~~~dVvVIGgG~  125 (296)
                      .+++..              +.+.--|.|++++|+.. | .+....    ..+...+.... ..+....+..|+|||+|.
T Consensus       117 ~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~  196 (448)
T KOG1399|consen  117 RVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGN  196 (448)
T ss_pred             EEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCCCchhhcCCcceehhhccCcccccCceEEEECCCc
Confidence            111111              34555689999999872 2 222222    11111111111 112233567999999999


Q ss_pred             HHHHHHHHHHhCCCcEEEEe
Q psy7665         126 GGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       126 aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|+..|..+++....|.+..
T Consensus       197 SG~DIs~d~~~~ak~v~~~~  216 (448)
T KOG1399|consen  197 SGMDISLDLLRVAKEVHLSV  216 (448)
T ss_pred             cHHHHHHHHHHhccCcceee
Confidence            99999999988877666653

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=93.62  E-value=0.16  Score=38.94  Aligned_cols=32  Identities=22%  Similarity=0.379  Sum_probs=29.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCc-EEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKK-VALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~-V~iiE  145 (296)
                      .+..++|||+|-+|-.++.+|...|.+ ++|+.
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~n   43 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVN   43 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEE
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEE
Confidence            345899999999999999999999987 99998

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=93.62  E-value=0.098  Score=47.93  Aligned_cols=32  Identities=19%  Similarity=0.162  Sum_probs=29.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+..|+|+|+|+.|+.+|..++..|.+|+++|
T Consensus       201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d  232 (413)
T cd00401         201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTE  232 (413)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence            35689999999999999999999999999999

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=93.55  E-value=0.13  Score=45.45  Aligned_cols=30  Identities=20%  Similarity=0.101  Sum_probs=28.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|+|||+|..|...|..|++.|++|+++.
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~   35 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLL   35 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEE
Confidence            379999999999999999999999999999

>TIGR00518 alaDH alanine dehydrogenase

Probab=93.54  E-value=0.1  Score=47.35  Aligned_cols=31  Identities=39%  Similarity=0.600  Sum_probs=29.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..+|+|||+|.+|..+|..|...|.+|+++|
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d  197 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGLGATVTILD  197 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHCCCeEEEEE
Confidence            3479999999999999999999999999999

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=93.40  E-value=0.11  Score=45.68  Aligned_cols=29  Identities=31%  Similarity=0.434  Sum_probs=27.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      +|.|||+|..|...|..++.+|. +|+++|
T Consensus         3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvD   32 (305)
T TIGR01763         3 KISVIGAGFVGATTAFRLAEKELADLVLLD   32 (305)
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCCeEEEEe
Confidence            69999999999999999999886 899999

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.39  E-value=0.11  Score=45.34  Aligned_cols=29  Identities=34%  Similarity=0.338  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||+|..|...|..+++.|++|+++|
T Consensus         6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d   34 (292)
T PRK07530          6 KVGVIGAGQMGNGIAHVCALAGYDVLLND   34 (292)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCeEEEEe
Confidence            69999999999999999999999999999

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.36  E-value=0.12  Score=45.05  Aligned_cols=29  Identities=31%  Similarity=0.425  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||+|..|...|..+++.|++|+++|
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d   33 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVD   33 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCceEEEe
Confidence            69999999999999999999999999999

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=93.28  E-value=0.14  Score=39.55  Aligned_cols=29  Identities=28%  Similarity=0.346  Sum_probs=27.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      +|+|||+|-.|++.|..|++.|. +++++|
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD   30 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLID   30 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEc
Confidence            48999999999999999999997 699999

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=93.27  E-value=0.12  Score=45.18  Aligned_cols=29  Identities=28%  Similarity=0.341  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||+|..|...|..+++.|++|+++|
T Consensus         5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d   33 (291)
T PRK06035          5 VIGVVGSGVMGQGIAQVFARTGYDVTIVD   33 (291)
T ss_pred             EEEEECccHHHHHHHHHHHhcCCeEEEEe
Confidence            69999999999999999999999999999

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=93.25  E-value=0.12  Score=45.54  Aligned_cols=29  Identities=21%  Similarity=0.361  Sum_probs=27.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--CcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMN--KKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE  145 (296)
                      +|.|||+|.+|..+|+.|+++|  .+++++|
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D   32 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVD   32 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEE
Confidence            6999999999999999999999  5899999

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=93.23  E-value=0.15  Score=40.98  Aligned_cols=29  Identities=24%  Similarity=0.282  Sum_probs=27.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      +|+|||+|..|...|..|++.|. +++++|
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD   30 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVD   30 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEe
Confidence            48999999999999999999998 599999

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=93.18  E-value=0.014  Score=54.22  Aligned_cols=126  Identities=14%  Similarity=0.123  Sum_probs=72.7

Q ss_pred             EEEEEcCChhHHHHHHHHHHHcCCCHHHHc-cCcCCCCChHHHHHHHHHhhcC----CCCceeeccceeeeeeeccccCC
Q psy7665          16 TAEISSNNAGEITQGYALGVMLGAYKQDFD-ALIGIHPTCAEAISLSWIKGYN----IEPEVIKLHTPYLVLAKARFLLP   90 (296)
Q Consensus        16 G~~~~g~~a~e~i~~~~~~~~~~~~k~~l~-~~i~~~pt~~e~l~v~~~~~~~----~~~~~~~~~~p~~v~~~~~~~~~   90 (296)
                      |+.+++.+....++++.   ..+++-..+. +.+..--.+.+..++++++|+.    ++.+.+...- |+|++++|...+
T Consensus       146 G~~Vtv~e~~~~~GGll---~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it~~~L~~e~-Dav~l~~G~~~~  221 (457)
T COG0493         146 GHDVTVFERVALDGGLL---LYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDITLEELLKEY-DAVFLATGAGKP  221 (457)
T ss_pred             CCeEEEeCCcCCCceeE---EecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcCCHHHHHHhh-CEEEEeccccCC
Confidence            45555555555554432   2333333333 2222233455667788887774    4556665544 999999997555


Q ss_pred             cc-chhhhc--cCcceeecc--------c-----cCCCCccccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665          91 TL-ECQEVY--HDGRFYDYL--------D-----NNFQTYDYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus        91 ~~-~~~~~~--~~~~~~~~~--------~-----~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+ ..++.+  ......+.|        .     ......+.+|+|||||..++.++....+.|. +|+.++
T Consensus       222 ~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~  293 (457)
T COG0493         222 RPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFY  293 (457)
T ss_pred             CCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEec
Confidence            43 222221  121111111        1     1111133799999999999999999999997 677775

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=93.16  E-value=0.13  Score=45.91  Aligned_cols=29  Identities=31%  Similarity=0.518  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||+|..|...|..|++.|++|++++
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~   32 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAAGADVTLIG   32 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcEEEEe
Confidence            69999999999999999999999999999

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=93.11  E-value=0.15  Score=42.13  Aligned_cols=31  Identities=26%  Similarity=0.362  Sum_probs=28.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      ..+|+|||+|..|.++|..|++.|. +++++|
T Consensus        21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD   52 (202)
T TIGR02356        21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVD   52 (202)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEec
Confidence            4589999999999999999999996 899999

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=93.04  E-value=0.18  Score=37.27  Aligned_cols=28  Identities=25%  Similarity=0.325  Sum_probs=25.7

Q ss_pred             EEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         118 LCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       118 VvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      |+|+|.|..|...+..|.+.+.+|+++|
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid   28 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVID   28 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEE
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEE
Confidence            6899999999999999999777999999

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=92.97  E-value=0.17  Score=40.42  Aligned_cols=32  Identities=19%  Similarity=0.177  Sum_probs=29.0

Q ss_pred             ccccEEEECCCh-HHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGS-GGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~-aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+.+|+|||+|- +|..+|.+|.++|.+|+++.
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~   75 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCH   75 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEE
Confidence            456899999996 79999999999999999999

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=92.88  E-value=0.15  Score=45.63  Aligned_cols=31  Identities=19%  Similarity=0.380  Sum_probs=28.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      ...|+|||+|..|..+|..|++.|. +++|+|
T Consensus        24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD   55 (338)
T PRK12475         24 EKHVLIVGAGALGAANAEALVRAGIGKLTIAD   55 (338)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEc
Confidence            3479999999999999999999997 899999

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=92.85  E-value=0.17  Score=42.31  Aligned_cols=31  Identities=19%  Similarity=0.305  Sum_probs=28.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..|+|||||.+++.=+..|.+.|.+|+|+-
T Consensus        25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVa   55 (223)
T PRK05562         25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILS   55 (223)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            4579999999999999999999999999996

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=92.69  E-value=0.17  Score=45.25  Aligned_cols=31  Identities=26%  Similarity=0.417  Sum_probs=29.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      ..+|+|||+|-.|+.+|..|++.|. +++|+|
T Consensus        24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD   55 (339)
T PRK07688         24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVD   55 (339)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEe
Confidence            3489999999999999999999998 899999

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=92.56  E-value=0.16  Score=46.88  Aligned_cols=30  Identities=37%  Similarity=0.350  Sum_probs=28.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|.|||.|..|+.+|..|+++|++|+.+|
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D   33 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVD   33 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEe
Confidence            379999999999999999999999999999

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=92.53  E-value=0.18  Score=42.84  Aligned_cols=31  Identities=19%  Similarity=0.427  Sum_probs=27.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-----------CcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMN-----------KKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G-----------~~V~iiE  145 (296)
                      ..+|+|||+|-.|+.++..|++.|           .+++|+|
T Consensus        11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD   52 (244)
T TIGR03736        11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYD   52 (244)
T ss_pred             CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEEC
Confidence            358999999999999999999974           2899999

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=92.53  E-value=0.23  Score=38.37  Aligned_cols=29  Identities=28%  Similarity=0.422  Sum_probs=26.9

Q ss_pred             cEEEECC-ChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         117 DLCVIGG-GSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       117 dVvVIGg-G~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      +|+|||+ |.+|...|+.|...+.  ++.++|
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D   33 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLID   33 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEE
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEec
Confidence            6999999 9999999999999874  799999

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=92.33  E-value=2.9  Score=37.85  Aligned_cols=17  Identities=24%  Similarity=0.237  Sum_probs=15.5

Q ss_pred             HHHHHHhCCCcEEEEec
Q psy7665         130 AAKEAASMNKKVALFDF  146 (296)
Q Consensus       130 aA~~l~~~G~~V~iiE~  146 (296)
                      +|++|+++|.+|+|+|+
T Consensus         1 ~A~~La~~G~~V~vlE~   17 (381)
T TIGR03197         1 TAYSLARRGWQVTLYEQ   17 (381)
T ss_pred             ChHHHHhCCCeeEEEeC
Confidence            58999999999999993

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=92.32  E-value=0.21  Score=40.98  Aligned_cols=31  Identities=19%  Similarity=0.213  Sum_probs=28.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      ...|+|||+|..|++.|..|++.|. +++++|
T Consensus        21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD   52 (197)
T cd01492          21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILD   52 (197)
T ss_pred             hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEE
Confidence            4589999999999999999999996 599999

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=92.26  E-value=0.23  Score=40.86  Aligned_cols=31  Identities=23%  Similarity=0.368  Sum_probs=28.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      ..+|+|||+|..|++.|..|++.|. +++++|
T Consensus        19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD   50 (198)
T cd01485          19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVD   50 (198)
T ss_pred             hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEE
Confidence            3589999999999999999999996 599999

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=92.24  E-value=0.18  Score=46.39  Aligned_cols=29  Identities=31%  Similarity=0.389  Sum_probs=28.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||.|..|+..|..|++.|++|+++|
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d   30 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVD   30 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEE
Confidence            58999999999999999999999999999

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.15  E-value=0.19  Score=47.42  Aligned_cols=30  Identities=17%  Similarity=0.262  Sum_probs=28.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..|+|+|.|.+|++++..|.++|.+|++.|
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D   42 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRFGARPTVCD   42 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCEEEEEc
Confidence            479999999999999999999999999999

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=92.11  E-value=0.22  Score=42.35  Aligned_cols=31  Identities=26%  Similarity=0.317  Sum_probs=28.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      ..+|+|||+|..|+++|..|++.|. +++|+|
T Consensus        32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD   63 (245)
T PRK05690         32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVD   63 (245)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEc
Confidence            3489999999999999999999995 799998

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.08  E-value=0.24  Score=43.71  Aligned_cols=29  Identities=34%  Similarity=0.468  Sum_probs=28.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||+|..|...|..|++.|++|+++|
T Consensus         6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d   34 (311)
T PRK06130          6 NLAIIGAGTMGSGIAALFARKGLQVVLID   34 (311)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence            69999999999999999999999999999

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=92.02  E-value=0.26  Score=40.95  Aligned_cols=31  Identities=23%  Similarity=0.256  Sum_probs=28.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCc-EEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKK-VALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~-V~iiE  145 (296)
                      ...|+|||+|-.|+..|..|++.|.. ++++|
T Consensus        28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD   59 (212)
T PRK08644         28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVD   59 (212)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEe
Confidence            34899999999999999999999974 99999

>PRK08328 hypothetical protein; Provisional

Probab=92.00  E-value=0.24  Score=41.80  Aligned_cols=31  Identities=26%  Similarity=0.335  Sum_probs=28.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      ..+|+|||+|-.|+.+|..|++.|. +++|+|
T Consensus        27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD   58 (231)
T PRK08328         27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLID   58 (231)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEc
Confidence            3489999999999999999999996 689998

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=91.99  E-value=0.25  Score=40.65  Aligned_cols=31  Identities=23%  Similarity=0.221  Sum_probs=29.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..++|+|.|-.|..+|..|.+.|.+|+++|
T Consensus        28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D   58 (200)
T cd01075          28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVAD   58 (200)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEc
Confidence            4579999999999999999999999999999

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=91.90  E-value=0.26  Score=43.60  Aligned_cols=31  Identities=19%  Similarity=0.336  Sum_probs=28.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      ..+|.|||+|.+|..+|+.|+..|.  ++.|+|
T Consensus         6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D   38 (315)
T PRK00066          6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIID   38 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEe
Confidence            4589999999999999999999987  799999

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=91.87  E-value=0.22  Score=45.91  Aligned_cols=29  Identities=24%  Similarity=0.395  Sum_probs=27.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC------cEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNK------KVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~------~V~iiE  145 (296)
                      +|+|||+|..||+++..|+..|.      +++|+|
T Consensus         1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD   35 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTD   35 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEEC
Confidence            48999999999999999999998      799999

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=91.86  E-value=0.23  Score=44.10  Aligned_cols=29  Identities=28%  Similarity=0.425  Sum_probs=28.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||+|..|...|..|++.|++|.++.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~   30 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWG   30 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEe
Confidence            58999999999999999999999999999

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=91.81  E-value=0.25  Score=41.50  Aligned_cols=31  Identities=32%  Similarity=0.424  Sum_probs=28.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      ..+|+|||+|..|++.|..|++.|. +++|+|
T Consensus        21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD   52 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVD   52 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEc
Confidence            3489999999999999999999996 789998

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=91.79  E-value=0.23  Score=46.48  Aligned_cols=29  Identities=28%  Similarity=0.379  Sum_probs=27.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--CcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMN--KKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE  145 (296)
                      +|+|||.|.+|+.+|..|++.|  ++|+.+|
T Consensus         3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD   33 (473)
T PLN02353          3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVD   33 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence            6999999999999999999985  7899999

>PRK06223 malate dehydrogenase; Reviewed

Probab=91.78  E-value=0.24  Score=43.56  Aligned_cols=29  Identities=34%  Similarity=0.510  Sum_probs=27.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      +|.|||+|..|...|..++..|. +|+++|
T Consensus         4 KI~VIGaG~vG~~ia~~la~~~~~ev~L~D   33 (307)
T PRK06223          4 KISIIGAGNVGATLAHLLALKELGDVVLFD   33 (307)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEEE
Confidence            79999999999999999999876 999999

>TIGR00936 ahcY adenosylhomocysteinase

Probab=91.76  E-value=0.24  Score=45.27  Aligned_cols=32  Identities=25%  Similarity=0.249  Sum_probs=30.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+..|+|+|.|+.|..+|..++..|.+|+++|
T Consensus       194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d  225 (406)
T TIGR00936       194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTE  225 (406)
T ss_pred             CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEe
Confidence            35689999999999999999999999999998

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=91.65  E-value=0.25  Score=46.53  Aligned_cols=31  Identities=35%  Similarity=0.515  Sum_probs=29.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..+|+|+|+|++|+.++..+...|.+|+++|
T Consensus       164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d  194 (511)
T TIGR00561       164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFD  194 (511)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence            3589999999999999999999999999999

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=91.61  E-value=0.28  Score=41.59  Aligned_cols=31  Identities=23%  Similarity=0.344  Sum_probs=28.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      ..+|+|||+|..|..+|..|++.|. +++++|
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD   55 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLD   55 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEe
Confidence            3589999999999999999999995 789998

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.59  E-value=0.22  Score=46.23  Aligned_cols=30  Identities=27%  Similarity=0.328  Sum_probs=28.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..++|+|+|.+|+++|..|++.|.+|++.|
T Consensus         6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d   35 (447)
T PRK02472          6 KKVLVLGLAKSGYAAAKLLHKLGANVTVND   35 (447)
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEc
Confidence            369999999999999999999999999999

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=91.51  E-value=0.32  Score=42.88  Aligned_cols=30  Identities=20%  Similarity=0.405  Sum_probs=28.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|.|||+|..|...|..|++.|++|.+++
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~   34 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASANGHRVRVWS   34 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEe
Confidence            479999999999999999999999999999

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=91.48  E-value=0.28  Score=43.53  Aligned_cols=30  Identities=33%  Similarity=0.362  Sum_probs=28.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+|+|||+|..|...|+.++..|. +++++|
T Consensus         7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvD   37 (321)
T PTZ00082          7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFD   37 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEe
Confidence            389999999999999999999995 899999

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.44  E-value=0.27  Score=45.76  Aligned_cols=30  Identities=30%  Similarity=0.338  Sum_probs=28.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..++|+|.|.+|+++|..|+++|.+|+++|
T Consensus         6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d   35 (445)
T PRK04308          6 KKILVAGLGGTGISMIAYLRKNGAEVAAYD   35 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence            379999999999999999999999999999

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=91.43  E-value=0.28  Score=42.94  Aligned_cols=29  Identities=34%  Similarity=0.437  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||+|..|...|..++..|++|+++|
T Consensus         6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d   34 (295)
T PLN02545          6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLD   34 (295)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCeEEEEe
Confidence            69999999999999999999999999999

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=91.41  E-value=0.28  Score=43.24  Aligned_cols=29  Identities=28%  Similarity=0.430  Sum_probs=27.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--CcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMN--KKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE  145 (296)
                      +|+|||+|.+|..+|+.|+..|  .+++++|
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D   32 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLID   32 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEe
Confidence            6999999999999999999999  5799999

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=91.37  E-value=0.29  Score=43.14  Aligned_cols=29  Identities=31%  Similarity=0.489  Sum_probs=26.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      +|.|||+|.+|.++|+.|...+.  +++|+|
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~D   31 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLID   31 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEe
Confidence            58999999999999999998885  699999

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=91.34  E-value=0.34  Score=43.19  Aligned_cols=41  Identities=22%  Similarity=0.218  Sum_probs=36.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      ..|||+|+|.|..=|..+..|+..|.+|+.+|  +++      .-|++.
T Consensus         5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD--~Nd------~YG~~~   45 (434)
T COG5044           5 TLYDVIILGTGLRESILSAALSWDGKNVLHID--KND------YYGSTS   45 (434)
T ss_pred             ccccEEEecccHHHHHHHHHhhhcCceEEEEe--CCC------ccCccc
Confidence            46899999999999999999999999999999  777      666653

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=91.29  E-value=0.31  Score=41.06  Aligned_cols=31  Identities=32%  Similarity=0.390  Sum_probs=28.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      ...|+|||.|-.|.++|..|++.|. +++|+|
T Consensus        11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD   42 (231)
T cd00755          11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLID   42 (231)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCEEEEEC
Confidence            3489999999999999999999996 799999

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=91.28  E-value=0.33  Score=41.02  Aligned_cols=29  Identities=24%  Similarity=0.398  Sum_probs=26.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      +|+|||+|..|++.+..|++.|. +++|+|
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD   30 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVID   30 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEe
Confidence            48999999999999999999995 689999

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=91.26  E-value=0.31  Score=44.17  Aligned_cols=30  Identities=30%  Similarity=0.377  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-CcEEEEec
Q psy7665         117 DLCVIGGGSGGISAAKEAASMN-KKVALFDF  146 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE~  146 (296)
                      +|+|||+|-+|..+|..|++.| .+|++.++
T Consensus         3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdR   33 (389)
T COG1748           3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADR   33 (389)
T ss_pred             cEEEECCchhHHHHHHHHHhCCCceEEEEeC
Confidence            7999999999999999999999 89999993

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=91.21  E-value=0.36  Score=40.56  Aligned_cols=31  Identities=19%  Similarity=0.456  Sum_probs=28.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC---cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK---KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~---~V~iiE  145 (296)
                      +..++|+|+|-+|..+|..|.+.|.   ++.+++
T Consensus        25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivd   58 (226)
T cd05311          25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVD   58 (226)
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEe
Confidence            3489999999999999999999997   499999

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=91.16  E-value=0.31  Score=42.50  Aligned_cols=29  Identities=28%  Similarity=0.366  Sum_probs=26.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      +|+|||+|..|++.+..|+..|. +++|+|
T Consensus         1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD   30 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGFRNIHVID   30 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEC
Confidence            48999999999999999999996 689998

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=91.08  E-value=0.3  Score=44.93  Aligned_cols=32  Identities=19%  Similarity=0.235  Sum_probs=29.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+..|+|+|.|+.|..+|..|+..|.+|+++|
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d  242 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTE  242 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            45589999999999999999999999999999

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=91.03  E-value=0.33  Score=41.35  Aligned_cols=30  Identities=20%  Similarity=0.340  Sum_probs=29.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..++|+|+|+.+...|..+...|++|+++|
T Consensus       101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D  130 (246)
T TIGR02964       101 PHVVLFGAGHVGRALVRALAPLPCRVTWVD  130 (246)
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEEe
Confidence            489999999999999999999999999999

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=90.90  E-value=0.31  Score=42.97  Aligned_cols=29  Identities=21%  Similarity=0.342  Sum_probs=27.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      +|+|||+|..|++.|..|+..|. +++|+|
T Consensus         1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD   30 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGFGEIHIID   30 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcCCeEEEEc
Confidence            48999999999999999999995 799999

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=90.84  E-value=0.34  Score=42.83  Aligned_cols=29  Identities=31%  Similarity=0.436  Sum_probs=28.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||+|..|...|..|++.|++|++++
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~   31 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWA   31 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEE
Confidence            69999999999999999999999999999

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=90.73  E-value=0.38  Score=42.78  Aligned_cols=29  Identities=34%  Similarity=0.422  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||+|.-|...|..|++.|++|++++
T Consensus         6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~   34 (328)
T PRK14618          6 RVAVLGAGAWGTALAVLAASKGVPVRLWA   34 (328)
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCeEEEEe
Confidence            69999999999999999999999999999

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=90.67  E-value=0.42  Score=41.94  Aligned_cols=31  Identities=19%  Similarity=0.339  Sum_probs=29.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +.+|+|||.|.+|..++..|.+.|.+|++++
T Consensus       152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~  182 (296)
T PRK08306        152 GSNVLVLGFGRTGMTLARTLKALGANVTVGA  182 (296)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEE
Confidence            5689999999999999999999999999999

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.54  E-value=0.32  Score=45.64  Aligned_cols=30  Identities=20%  Similarity=0.105  Sum_probs=28.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..|+|+|.|-+|.++|..|.++|.+|++.|
T Consensus         9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d   38 (468)
T PRK04690          9 RRVALWGWGREGRAAYRALRAHLPAQALTL   38 (468)
T ss_pred             CEEEEEccchhhHHHHHHHHHcCCEEEEEc
Confidence            479999999999999999999999999999

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=90.47  E-value=0.43  Score=41.58  Aligned_cols=31  Identities=19%  Similarity=0.441  Sum_probs=28.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      ..+|+|||+|-+|.++++.|++.|. +++|++
T Consensus       127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~n  158 (284)
T PRK12549        127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFD  158 (284)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEC
Confidence            3589999999999999999999996 799999

>PTZ00117 malate dehydrogenase; Provisional

Probab=90.44  E-value=0.42  Score=42.41  Aligned_cols=30  Identities=30%  Similarity=0.418  Sum_probs=27.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-CcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMN-KKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE  145 (296)
                      .+|+|||+|..|...|..++..| .+++++|
T Consensus         6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~D   36 (319)
T PTZ00117          6 KKISMIGAGQIGSTVALLILQKNLGDVVLYD   36 (319)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCCeEEEEE
Confidence            48999999999999999999988 6899999

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=90.43  E-value=0.44  Score=37.63  Aligned_cols=31  Identities=23%  Similarity=0.351  Sum_probs=25.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..++|+|=|..|-.+|.+|+..|.+|+|.|
T Consensus        23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e   53 (162)
T PF00670_consen   23 GKRVVVIGYGKVGKGIARALRGLGARVTVTE   53 (162)
T ss_dssp             TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-
T ss_pred             CCEEEEeCCCcccHHHHHHHhhCCCEEEEEE
Confidence            4579999999999999999999999999999

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=90.34  E-value=0.45  Score=42.08  Aligned_cols=30  Identities=23%  Similarity=0.366  Sum_probs=27.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      .+|.|||+|.+|.++|+.|...|.  +++|+|
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD   35 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVD   35 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEe
Confidence            389999999999999999998875  699999

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=90.26  E-value=0.35  Score=42.51  Aligned_cols=28  Identities=32%  Similarity=0.474  Sum_probs=26.1

Q ss_pred             EEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         118 LCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       118 VvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      |.|||+|..|...|..++..|. +|+++|
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~D   29 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLD   29 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEe
Confidence            5799999999999999998876 999999

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=90.23  E-value=0.46  Score=41.48  Aligned_cols=32  Identities=19%  Similarity=0.310  Sum_probs=29.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+..++|||.|..|...|..|+..|.+|++++
T Consensus       150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~  181 (287)
T TIGR02853       150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGA  181 (287)
T ss_pred             CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEe
Confidence            34589999999999999999999999999999

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=90.19  E-value=0.4  Score=43.78  Aligned_cols=28  Identities=29%  Similarity=0.410  Sum_probs=25.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||.|..|+..|..++. |++|+++|
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD   29 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALD   29 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEE
Confidence            58999999999999988775 99999999

>PRK08223 hypothetical protein; Validated

Probab=90.16  E-value=0.45  Score=41.34  Aligned_cols=31  Identities=19%  Similarity=0.193  Sum_probs=28.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      ...|+|||+|-.|+.+|.+|++.|. +++|+|
T Consensus        27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD   58 (287)
T PRK08223         27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIAD   58 (287)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEe
Confidence            3489999999999999999999996 789998

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=90.14  E-value=0.33  Score=44.88  Aligned_cols=31  Identities=26%  Similarity=0.408  Sum_probs=29.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +.+|+|+|-|-+|+++|..|.++|.+|++.|
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D   37 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSD   37 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEc
Confidence            4589999999999999999999999999999

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=90.04  E-value=0.44  Score=41.60  Aligned_cols=29  Identities=17%  Similarity=0.371  Sum_probs=27.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      +|+|||+|-.|+..|..|++.|. +++++|
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD   30 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVD   30 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEC
Confidence            48999999999999999999996 689998

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=90.03  E-value=0.38  Score=47.57  Aligned_cols=30  Identities=30%  Similarity=0.286  Sum_probs=28.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..|.|||+|..|...|..++..|++|+++|
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d  343 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKD  343 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEe
Confidence            479999999999999999999999999999

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.98  E-value=0.44  Score=44.77  Aligned_cols=30  Identities=23%  Similarity=0.271  Sum_probs=28.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..|+|+|.|-+|+++|..|.+.|.+|++.|
T Consensus        16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D   45 (473)
T PRK00141         16 GRVLVAGAGVSGRGIAAMLSELGCDVVVAD   45 (473)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCEEEEEC
Confidence            469999999999999999999999999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	296
3dh9_A	482	Crystal Structure Of Drosophila Thioredoxin Reducta		2e-33
3dgh_A	483	Crystal Structure Of Drosophila Thioredoxin Reducta		3e-33
2nvk_X	488	Crystal Structure Of Thioredoxin Reductase From Dro		3e-33
3h4k_A	598	Crystal Structure Of The Wild Type Thioredoxin Glut		1e-30
2v6o_A	596	Structure Of Schistosoma Mansoni Thioredoxin-Glutat		1e-30
2x8c_A	598	Thioredoxin Glutathione Reductase From Schistosoma		1e-30
1zdl_A	517	Crystal Structure Of Mouse Thioredoxin Reductase Ty		3e-30
3dgz_A	488	Crystal Structure Of Mouse Mitochondrial Thioredoxi		3e-30
3qfa_A	519	Crystal Structure Of The Human Thioredoxin Reductas		4e-30
2j3n_A	519	X-Ray Structure Of Human Thioredoxin Reductase 1 Le		5e-30
2cfy_A	521	Crystal Structure Of Human Thioredoxin Reductase 1		5e-30
2zz0_A	513	Crystal Structure Of Human Thioredoxin Reductase I		5e-30
3ean_A	499	Crystal Structure Of Recombinant Rat Selenoprotein		9e-29
1h6v_A	499	Mammalian Thioredoxin Reductase Length = 499		1e-28
4b1b_A	542	Crystal Structure Of Plasmodium Falciparum Oxidised		2e-24
2r9z_A	463	Glutathione Amide Reductase From Chromatium Gracile		1e-16
1ger_A	450	The Structure Of Glutathione Reductase From Escheri		2e-15
1ges_A	450	Anatomy Of An Engineered Nad-Binding Site Length =		2e-15
1onf_A	500	Crystal Structure Of Plasmodium Falciparum Glutathi		3e-14
3o0h_A	484	Crystal Structure Of Glutathione Reductase From Bar		5e-12
4dna_A	463	Crystal Structure Of Putative Glutathione Reductase		7e-12
2grt_A	461	Human Glutathione Reductase A34e, R37w Mutant, Oxid		2e-09
1xan_A	461	Human Glutathione Reductase In Complex With A Xanth		2e-09
1grt_A	478	Human Glutathione Reductase A34eR37W MUTANT Length		2e-09
3djg_X	477	Catalytic Cycle Of Human Glutathione Reductase Near		2e-09
1bwc_A	478	Structure Of Human Glutathione Reductase Complexed		2e-09
2aaq_A	479	Crystal Structure Analysis Of The Human Glutahione		2e-09
2hqm_A	479	Crystal Structure Of Glutathione Reductase Glr1 Fro		3e-08
1gsn_A	478	Human Glutathione Reductase Modified By Dinitrosogl		5e-08
1grg_A	478	Substrate Binding And Catalysis By Glutathione Redu		5e-08
1dnc_A	478	Human Glutathione Reductase Modified By Diglutathio		5e-08
2jk6_A	511	Structure Of Trypanothione Reductase From Leishmani		2e-07
2x50_A	510	Crystal Structure Of Trypanothione Reductase From L		2e-07
1k4q_A	463	Human Glutathione Reductase Inactivated By Peroxyni		2e-07
2wba_A	492	Properties Of Trypanothione Reductase From T. Bruce		6e-07
3ic9_A	492	The Structure Of Dihydrolipoamide Dehydrogenase Fro		6e-07
2woi_A	495	Trypanothione Reductase From Trypanosoma Brucei Len		6e-07
1nda_A	491	The Structure Of Trypanosoma Cruzi Trypanothione Re		3e-06
1typ_A	487	Substrate Interactions Between Trypanothione Reduct		3e-06
1tyt_A	487	Crystal And Molecular Structure Of Crithidia Fascic		3e-06
1fea_A	490	Unliganded Crithidia Fasciculata Trypanothione Redu		3e-06
2tpr_A	490	X-ray Structure Of Trypanothione Reductase From Cri		3e-06
1ebd_A	455	Dihydrolipoamide Dehydrogenase Complexed With The B		1e-05
1bzl_A	486	Crystal Structure Of Trypanosoma Cruzi Trypanothion		1e-05
1gxf_A	492	Crystal Structure Of Trypanosoma Cruzi Trypanothion		1e-05
1aog_A	485	Trypanosoma Cruzi Trypanothione Reductase (Oxidized		1e-05
2qae_A	468	Crystal Structure Analysis Of Trypanosoma Cruzi Lip		1e-05
1ojt_A	482	Structure Of Dihydrolipoamide Dehydrogenase Length		9e-05
1bhy_A	482	Low Temperature Middle Resolution Structure Of P64k		9e-05
2eq6_A	464	Crystal Structure Of Lipoamide Dehydrogenase From T		1e-04
3urh_A	491	Crystal Structure Of A Dihydrolipoamide Dehydrogena		4e-04

>pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase, Wild-Type Length = 482

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/164 (44%), Positives = 92/164 (56%), Gaps = 5/164 (3%)
Query: 113 TYDYDLCVXXXXXXXXXXXKEAASMNKKVALFDFVTPSQH-GTVWGLGGTCVNVGCIPKK 171
           +YDYDL V           KEA     +VA  DFV P+   GT WG+GGTCVNVGCIPKK
Sbjct: 3   SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKK 62
Query: 172 LFHRASLLNEEATTSDNFGFHMKKSFT--WKTLVDNVQKYIRXXXXXXXXXXXXXXIDYF 229
           L H+ASLL E    +  +G+++       W  LV +VQ +I+              ++Y 
Sbjct: 63  LMHQASLLGEAVHEAAAYGWNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYI 122
Query: 230 NAKAVFVDKHRV--KFAGEERTVSAQNFIIAVGGRPTYPDIPGA 271
           N    FVD H +  K    ERT++AQ F+IAVGGRP YPDIPGA
Sbjct: 123 NGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGA 166

>pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase, C-Terminal 8- Residue Truncation Length = 483

Iteration: 1
 Score =  139 bits (349), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 73/164 (44%), Positives = 92/164 (56%), Gaps = 5/164 (3%)
Query: 113 TYDYDLCVXXXXXXXXXXXKEAASMNKKVALFDFVTPSQH-GTVWGLGGTCVNVGCIPKK 171
           +YDYDL V           KEA     +VA  DFV P+   GT WG+GGTCVNVGCIPKK
Sbjct: 7   SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKK 66
Query: 172 LFHRASLLNEEATTSDNFGFHMKKSFT--WKTLVDNVQKYIRXXXXXXXXXXXXXXIDYF 229
           L H+ASLL E    +  +G+++       W  LV +VQ +I+              ++Y 
Sbjct: 67  LMHQASLLGEAVHEAAAYGWNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYI 126
Query: 230 NAKAVFVDKHRV--KFAGEERTVSAQNFIIAVGGRPTYPDIPGA 271
           N    FVD H +  K    ERT++AQ F+IAVGGRP YPDIPGA
Sbjct: 127 NGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGA 170

>pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila Melanogaster Length = 488

Iteration: 1
 Score =  139 bits (349), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 73/164 (44%), Positives = 92/164 (56%), Gaps = 5/164 (3%)
Query: 113 TYDYDLCVXXXXXXXXXXXKEAASMNKKVALFDFVTPSQH-GTVWGLGGTCVNVGCIPKK 171
           +YDYDL V           KEA     +VA  DFV P+   GT WG+GGTCVNVGCIPKK
Sbjct: 7   SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKK 66
Query: 172 LFHRASLLNEEATTSDNFGFHMKKSFT--WKTLVDNVQKYIRXXXXXXXXXXXXXXIDYF 229
           L H+ASLL E    +  +G+++       W  LV +VQ +I+              ++Y 
Sbjct: 67  LMHQASLLGEAVHEAAAYGWNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYI 126
Query: 230 NAKAVFVDKHRV--KFAGEERTVSAQNFIIAVGGRPTYPDIPGA 271
           N    FVD H +  K    ERT++AQ F+IAVGGRP YPDIPGA
Sbjct: 127 NGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGA 170

>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione Reductase From Schistosoma Mansoni In Complex With Auranofin Length = 598

Iteration: 1
 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 89/168 (52%), Gaps = 6/168 (3%)
Query: 110 NFQTYDYDLCVXXXXXXXXXXXKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIP 169
           N   YDYDL V           KEAA    K A+ D+V P+  GT WGLGGTCVNVGCIP
Sbjct: 102 NESKYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIP 161
Query: 170 KKLFHRASLLNEEATTSDNFGFHM---KKSFTWKTLVDNVQKYIRXXXXXXXXXXXXXXI 226
           KKL H+A LL+     +++FG+ +   K S  W T+V+ VQ +I               +
Sbjct: 162 KKLMHQAGLLSHALEDAEHFGWSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQV 221
Query: 227 DYFNAKAVFVDKHRVKFAGEER---TVSAQNFIIAVGGRPTYPDIPGA 271
            Y NAK   +  H V+   + +   T++    I+A G RP YP+IPGA
Sbjct: 222 TYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYPEIPGA 269

>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione Reductase (Smtgr) Length = 596

Iteration: 1
 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 89/168 (52%), Gaps = 6/168 (3%)
Query: 110 NFQTYDYDLCVXXXXXXXXXXXKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIP 169
           N   YDYDL V           KEAA    K A+ D+V P+  GT WGLGGTCVNVGCIP
Sbjct: 102 NESKYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIP 161
Query: 170 KKLFHRASLLNEEATTSDNFGFHM---KKSFTWKTLVDNVQKYIRXXXXXXXXXXXXXXI 226
           KKL H+A LL+     +++FG+ +   K S  W T+V+ VQ +I               +
Sbjct: 162 KKLMHQAGLLSHALEDAEHFGWSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQV 221
Query: 227 DYFNAKAVFVDKHRVKFAGEER---TVSAQNFIIAVGGRPTYPDIPGA 271
            Y NAK   +  H V+   + +   T++    I+A G RP YP+IPGA
Sbjct: 222 TYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYPEIPGA 269

>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni With The Reduced C-Terminal End Length = 598

Iteration: 1
 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/168 (39%), Positives = 89/168 (52%), Gaps = 6/168 (3%)
Query: 110 NFQTYDYDLCVXXXXXXXXXXXKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIP 169
           N   YDYDL V           KEAA    K A+ D+V P+  GT WGLGGTCVNVGCIP
Sbjct: 102 NESKYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIP 161
Query: 170 KKLFHRASLLNEEATTSDNFGFHM---KKSFTWKTLVDNVQKYIRXXXXXXXXXXXXXXI 226
           KKL H+A LL+     +++FG+ +   K S  W T+V+ VQ +I               +
Sbjct: 162 KKLMHQAGLLSHALEDAEHFGWSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQV 221
Query: 227 DYFNAKAVFVDKHRVKFAGEER---TVSAQNFIIAVGGRPTYPDIPGA 271
            Y NAK   +  H V+   + +   T++    I+A G RP YP+IPGA
Sbjct: 222 TYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYPEIPGA 269

>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2 Length = 517

Iteration: 1
 Score =  129 bits (323), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 90/157 (57%), Gaps = 5/157 (3%)
Query: 115 DYDLCVXXXXXXXXXXXKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFH 174
            +DL V           KEAA + KKVA+ D+V PS  GT WGLGGTCVNVGCIPKKL H
Sbjct: 32  SFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMH 91
Query: 175 RASLLNEEATTSDNFGFHMKK--SFTWKTLVDNVQKYIRXXXXXXXXXXXXXXIDYFNAK 232
           +A+LL      + ++G+ + +     WKT+ + VQ +++              + YFN K
Sbjct: 92  QAALLGGMIRDAHHYGWEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIK 151
Query: 233 AVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYP 266
           A FVD+H V+     G+   +SA++ +IA GGRP YP
Sbjct: 152 ASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYP 188

>pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin Reductase, C- Terminal 3-Residue Truncation Length = 488

Iteration: 1
 Score =  129 bits (323), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 90/157 (57%), Gaps = 5/157 (3%)
Query: 115 DYDLCVXXXXXXXXXXXKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFH 174
            +DL V           KEAA + KKVA+ D+V PS  GT WGLGGTCVNVGCIPKKL H
Sbjct: 6   SFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMH 65
Query: 175 RASLLNEEATTSDNFGFHMKK--SFTWKTLVDNVQKYIRXXXXXXXXXXXXXXIDYFNAK 232
           +A+LL      + ++G+ + +     WKT+ + VQ +++              + YFN K
Sbjct: 66  QAALLGGMIRDAHHYGWEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIK 125
Query: 233 AVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYP 266
           A FVD+H V+     G+   +SA++ +IA GGRP YP
Sbjct: 126 ASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYP 162

>pdb|3QFA|A Chain A, Crystal Structure Of The Human Thioredoxin Reductase-Thioredoxin Complex Length = 519

Iteration: 1
 Score =  128 bits (321), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 94/166 (56%), Gaps = 5/166 (3%)
Query: 112 QTYDYDLCVXXXXXXXXXXXKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
           ++YDYDL +           KEAA   KKV + DFVTP+  GT WGLGGTCVNVGCIPKK
Sbjct: 29  KSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKK 88
Query: 172 LFHRASLLNEEATTSDNFGFHMKKSFT--WKTLVDNVQKYIRXXXXXXXXXXXXXXIDYF 229
           L H+A+LL +    S N+G+ ++++    W  +++ VQ +I               + Y 
Sbjct: 89  LMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYE 148
Query: 230 NAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGAR 272
           NA   F+  HR+K     G+E+  SA+ F+IA G RP Y  IPG +
Sbjct: 149 NAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDK 194

>pdb|2J3N|A Chain A, X-Ray Structure Of Human Thioredoxin Reductase 1 Length = 519

Iteration: 1
 Score =  128 bits (321), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 94/166 (56%), Gaps = 5/166 (3%)
Query: 112 QTYDYDLCVXXXXXXXXXXXKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
           ++YDYDL +           KEAA   KKV + DFVTP+  GT WGLGGTCVNVGCIPKK
Sbjct: 29  KSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKK 88
Query: 172 LFHRASLLNEEATTSDNFGFHMKKSFT--WKTLVDNVQKYIRXXXXXXXXXXXXXXIDYF 229
           L H+A+LL +    S N+G+ ++++    W  +++ VQ +I               + Y 
Sbjct: 89  LMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYE 148
Query: 230 NAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGAR 272
           NA   F+  HR+K     G+E+  SA+ F+IA G RP Y  IPG +
Sbjct: 149 NAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDK 194

>pdb|2CFY|A Chain A, Crystal Structure Of Human Thioredoxin Reductase 1 Length = 521

Iteration: 1
 Score =  128 bits (321), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 94/166 (56%), Gaps = 5/166 (3%)
Query: 112 QTYDYDLCVXXXXXXXXXXXKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
           ++YDYDL +           KEAA   KKV + DFVTP+  GT WGLGGTCVNVGCIPKK
Sbjct: 31  KSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKK 90
Query: 172 LFHRASLLNEEATTSDNFGFHMKKSFT--WKTLVDNVQKYIRXXXXXXXXXXXXXXIDYF 229
           L H+A+LL +    S N+G+ ++++    W  +++ VQ +I               + Y 
Sbjct: 91  LMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYE 150
Query: 230 NAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGAR 272
           NA   F+  HR+K     G+E+  SA+ F+IA G RP Y  IPG +
Sbjct: 151 NAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDK 196

>pdb|2ZZ0|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I (Secys 498 Cys) Length = 513

Iteration: 1
 Score =  128 bits (321), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 94/166 (56%), Gaps = 5/166 (3%)
Query: 112 QTYDYDLCVXXXXXXXXXXXKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
           ++YDYDL +           KEAA   KKV + DFVTP+  GT WGLGGTCVNVGCIPKK
Sbjct: 23  KSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKK 82
Query: 172 LFHRASLLNEEATTSDNFGFHMKKSFT--WKTLVDNVQKYIRXXXXXXXXXXXXXXIDYF 229
           L H+A+LL +    S N+G+ ++++    W  +++ VQ +I               + Y 
Sbjct: 83  LMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYE 142
Query: 230 NAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGAR 272
           NA   F+  HR+K     G+E+  SA+ F+IA G RP Y  IPG +
Sbjct: 143 NAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDK 188

>pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein Thioredoxin Reductase 1 With Reduced C-Terminal Tail Length = 499

Iteration: 1
 Score =  124 bits (310), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 94/166 (56%), Gaps = 5/166 (3%)
Query: 112 QTYDYDLCVXXXXXXXXXXXKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
           ++YD+DL +           KEAA  +KKV + DFVTP+  GT WGLGGTCVNVGCIPKK
Sbjct: 9   KSYDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKK 68
Query: 172 LFHRASLLNEEATTSDNFGFHMKKSFT--WKTLVDNVQKYIRXXXXXXXXXXXXXXIDYF 229
           L H+A+LL +    S N+G+ ++ +    W+ + ++VQ +I               + Y 
Sbjct: 69  LMHQAALLGQALKDSRNYGWKLEDTVKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYE 128
Query: 230 NAKAVFVDKHRV---KFAGEERTVSAQNFIIAVGGRPTYPDIPGAR 272
           NA   F+  H++      G+E+  SA+ F+IA G RP Y  IPG +
Sbjct: 129 NAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRYLGIPGDK 174

>pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase Length = 499

Iteration: 1
 Score =  123 bits (309), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 94/166 (56%), Gaps = 5/166 (3%)
Query: 112 QTYDYDLCVXXXXXXXXXXXKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
           ++YD+DL +           KEAA  +KKV + DFVTP+  GT WGLGGTCVNVGCIPKK
Sbjct: 9   KSYDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKK 68
Query: 172 LFHRASLLNEEATTSDNFGFHMKKSFT--WKTLVDNVQKYIRXXXXXXXXXXXXXXIDYF 229
           L H+A+LL +    S N+G+ ++ +    W+ + ++VQ +I               + Y 
Sbjct: 69  LMHQAALLGQALKDSRNYGWKLEDTVKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYE 128
Query: 230 NAKAVFVDKHRV---KFAGEERTVSAQNFIIAVGGRPTYPDIPGAR 272
           NA   F+  H++      G+E+  SA+ F+IA G RP Y  IPG +
Sbjct: 129 NAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRYLGIPGDK 174

>pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised Thioredoxin Reductase At 2.9 Angstrom Length = 542

Iteration: 1
 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 66/175 (37%), Positives = 84/175 (48%), Gaps = 8/175 (4%)
Query: 112 QTYDYDLCVXXXXXXXXXXXKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
            TYDYD  V           KEAA+   +V LFD+V PS  GT WG+GGTCVNVGC+PKK
Sbjct: 39  HTYDYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKK 98
Query: 172 LFHRASLLNEE-ATTSDNFGFHMKK-SFTWKTLVDNVQKYIRXXXXXXXXXXXXXXIDYF 229
           L H A  +       S  +G+        WK LV  VQ +IR              + Y 
Sbjct: 99  LMHYAGHMGSIFKLDSKAYGWKFDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYI 158
Query: 230 NAKAVFVDKHRVKF-----AGEERTVSAQNFIIAVGGRPTYP-DIPGARLLRTLS 278
           N  A   DK+ V +       +E TV+ +  +IA G RP  P D+ GA+ L   S
Sbjct: 159 NGLAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGCRPHIPDDVEGAKELSITS 213

>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile Length = 463

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 72/162 (44%), Gaps = 12/162 (7%)
Query: 113 TYDYDLCVXXXXXXXXXXXKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKL 172
           T  +DL             ++AA+  K+VAL +            LGGTCVNVGC+PKK+
Sbjct: 2   TQHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKA---------LGGTCVNVGCVPKKV 52
Query: 173 FHRASLLNEEATTSDNFGFHMK-KSFTWKTLVDNVQKYIRXXXXXXXXXXXXXXIDYFNA 231
              AS L E    +  FG      +  W  LV    +YI               I   + 
Sbjct: 53  MWYASHLAEAVRDAPGFGVQASGGTLDWPRLVAGRDRYIGAINSFWDGYVERLGITRVDG 112
Query: 232 KAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGARL 273
            A FVD H ++  G+   +SA + +IA GGRP  P +PGA L
Sbjct: 113 HARFVDAHTIEVEGQR--LSADHIVIATGGRPIVPRLPGAEL 152

>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia Coli At 1.86 Angstroms Resolution: Comparison With The Enzyme From Human Erythrocytes Length = 450

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 61/115 (53%), Gaps = 4/115 (3%)
Query: 158 LGGTCVNVGCIPKK-LFHRASLLNEEATTSDNFGFHMK-KSFTWKTLVDNVQKYIRXXXX 215
           LGGTCVNVGC+PKK ++H A +         ++GF      F W+TL+ +   YI     
Sbjct: 38  LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETLIASRTAYIDRIHT 97
Query: 216 XXXXXXXXXXIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG 270
                     +D     A FVD   ++  GE  T++A + +IA GGRP++PDIPG
Sbjct: 98  SYENVLGKNNVDVIKGFARFVDAKTLEVNGE--TITADHILIATGGRPSHPDIPG 150

>pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site Length = 450

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 61/115 (53%), Gaps = 4/115 (3%)
Query: 158 LGGTCVNVGCIPKK-LFHRASLLNEEATTSDNFGFHMK-KSFTWKTLVDNVQKYIRXXXX 215
           LGGTCVNVGC+PKK ++H A +         ++GF      F W+TL+ +   YI     
Sbjct: 38  LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETLIASRTAYIDRIHT 97
Query: 216 XXXXXXXXXXIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG 270
                     +D     A FVD   ++  GE  T++A + +IA GGRP++PDIPG
Sbjct: 98  SYENVLGKNNVDVIKGFARFVDAKTLEVNGE--TITADHILIATGGRPSHPDIPG 150

>pdb|1ONF|A Chain A, Crystal Structure Of Plasmodium Falciparum Glutathione Reductase Length = 500

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 76/167 (45%), Gaps = 21/167 (12%)
Query: 116 YDLCVXXXXXXXXXXXKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHR 175
           YDL V           + AA  N KVAL   V  S+      LGGTCVNVGC+PKK+   
Sbjct: 3   YDLIVIGGGSGGMAAARRAARHNAKVAL---VEKSR------LGGTCVNVGCVPKKIMFN 53
Query: 176 ASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRXXXXXXXXXXXXXXIDYFNAKAVF 235
           A+ +++    S ++GF  K SF    LV+   KYI+              +D +   A F
Sbjct: 54  AASVHDILENSRHYGFDTKFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASF 113
Query: 236 VDKHRVKFAG------------EERTVSAQNFIIAVGGRPTYPDIPG 270
           + ++R+   G             E  +  +N +IAVG +P +P + G
Sbjct: 114 LSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPVKG 160

>pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella Henselae Length = 484

Iteration: 1
 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 10/151 (6%)
Query: 113 TYDYDLCVXXXXXXXXXXXKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKL 172
           ++D+DL V           + A ++ K+VA+ +          + +GGTCV  GC+PKKL
Sbjct: 24  SFDFDLFVIGSGSGGVRAARLAGALGKRVAIAE---------EYRIGGTCVIRGCVPKKL 74
Query: 173 FHRASLLNEEATTSDNFGF-HMKKSFTWKTLVDNVQKYIRXXXXXXXXXXXXXXIDYFNA 231
           +  AS   +E + S  FG+ +    F W+ LV    K I               +  + +
Sbjct: 75  YFYASQYAQEFSKSIGFGWKYADPIFNWEKLVAAKNKEISRLEGLYREGLQNSNVHIYES 134
Query: 232 KAVFVDKHRVKFAGEERTVSAQNFIIAVGGR 262
           +AVFVD+H ++ +     +SA+  +IA G +
Sbjct: 135 RAVFVDEHTLELSVTGERISAEKILIATGAK 165

>pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From Sinorhizobium Meliloti 1021 Length = 463

Iteration: 1
 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 75/165 (45%), Gaps = 11/165 (6%)
Query: 114 YDYDLCVXXXXXXXXXXXKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLF 173
           +DYDL V           + AA++ KKVA+ +          +  GGTCV  GC+PKKL+
Sbjct: 4   FDYDLFVIGGGSGGVRSGRLAAALGKKVAIAE---------EFRYGGTCVIRGCVPKKLY 54
Query: 174 HRASLLNEEATTSDNFGFHMKKS-FTWKTLVDNVQKYIRXXXXXXXXXXXXXXIDYFNAK 232
             AS   E    +  FG+ + +S F W  LV   ++ I                +  + +
Sbjct: 55  VYASQFAEHFEDAAGFGWTVGESRFDWAKLVAAKEQEIARLEGLYRKGLANAGAEILDTR 114
Query: 233 AVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD-IPGARLLRT 276
           A     + VK     +TV+A+  +IAVGG P+  D +PG  L  T
Sbjct: 115 AELAGPNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHELCIT 159

>pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized Glutathione Complex Length = 461

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 158 LGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGF-HMKKSFTWKTLVDNVQKYIRXXXXX 216
           LGGTCVNVGC+PKK+    ++ +E      ++GF   +  F W+ + +    Y+      
Sbjct: 37  LGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAI 96
Query: 217 XXXXXXXXXIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYP---DIPGARL 273
                    I+     A F    +       +  +A + +IA GG P+ P    IPGA L
Sbjct: 97  YQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGASL 156

>pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene Inhibitor Length = 461

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 158 LGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGF-HMKKSFTWKTLVDNVQKYIRXXXXX 216
           LGGTCVNVGC+PKK+    ++ +E      ++GF   +  F W+ + +    Y+      
Sbjct: 37  LGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAI 96
Query: 217 XXXXXXXXXIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYP---DIPGARL 273
                    I+     A F    +       +  +A + +IA GG P+ P    IPGA L
Sbjct: 97  YQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGASL 156

>pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT Length = 478

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 158 LGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGF-HMKKSFTWKTLVDNVQKYIRXXXXX 216
           LGGTCVNVGC+PKK+    ++ +E      ++GF   +  F W+ + +    Y+      
Sbjct: 54  LGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAI 113
Query: 217 XXXXXXXXXIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYP---DIPGARL 273
                    I+     A F    +       +  +A + +IA GG P+ P    IPGA L
Sbjct: 114 YQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGASL 173

>pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A Resolution Length = 477

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 158 LGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGF-HMKKSFTWKTLVDNVQKYIRXXXXX 216
           LGGTCVNVGC+PKK+    ++ +E      ++GF   +  F W+ + +    Y+      
Sbjct: 53  LGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAI 112
Query: 217 XXXXXXXXXIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYP---DIPGARL 273
                    I+     A F    +       +  +A + +IA GG P+ P    IPGA L
Sbjct: 113 YQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGASL 172

>pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With Ajoene Inhibitor And Subversive Substrate Length = 478

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 158 LGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGF-HMKKSFTWKTLVDNVQKYIRXXXXX 216
           LGGTCVNVGC+PKK+    ++ +E      ++GF   +  F W+ + +    Y+      
Sbjct: 54  LGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAI 113
Query: 217 XXXXXXXXXIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYP---DIPGARL 273
                    I+     A F    +       +  +A + +IA GG P+ P    IPGA L
Sbjct: 114 YQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGASL 173

>pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione Reductase, Complexed With Gopi Length = 479

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 158 LGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGF-HMKKSFTWKTLVDNVQKYIRXXXXX 216
           LGGTCVNVGC+PKK+    ++ +E      ++GF   +  F W+ + +    Y+      
Sbjct: 55  LGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAI 114
Query: 217 XXXXXXXXXIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYP---DIPGARL 273
                    I+     A F    +       +  +A + +IA GG P+ P    IPGA L
Sbjct: 115 YQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGASL 174

>pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The Yeast Saccharomyces Cerevisiae Length = 479

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 70/182 (38%), Gaps = 22/182 (12%)
Query: 103 FYDYLDNNFQTYDYDLCVXXXXXXXXXXXKEAASMNKKVALFDFVTPSQHGTVWGLGGTC 162
           + +++  N + YDY   V           + AAS   K  L +            LGGTC
Sbjct: 1   YVEFMSTNTKHYDY--LVIGGGSGGVASARRAASYGAKTLLVE---------AKALGGTC 49
Query: 163 VNVGCIPKKLFHRASLLNEEATTSDNFGFHMK-------KSFTWKTLVDNVQKYIRXXXX 215
           VNVGC+PKK+   AS L    + ++ +G +          +F W         Y+     
Sbjct: 50  VNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDKEHLTFNWPEFKQKRDAYVHRLNG 109
Query: 216 XXXXXXXXXXIDYFNAKAVFVDKHRVKFAGEERTV---SAQNFIIAVGGRPTYPD-IPGA 271
                     +D     A F     V+    + T    SA + ++A GG+  +P+ IPG 
Sbjct: 110 IYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPGF 169
Query: 272 RL 273
            L
Sbjct: 170 EL 171

>pdb|1GSN|A Chain A, Human Glutathione Reductase Modified By Dinitrosoglutathione Length = 478

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 13/162 (8%)
Query: 116 YDLCVXXXXXXXXXXXKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHR 175
           YD  V           + AA +  + A+ +            LGGTCVNVG +PKK+   
Sbjct: 21  YDYLVIGGGSGGLASARRAAELGARAAVVES---------HKLGGTCVNVGXVPKKVMWN 71
Query: 176 ASLLNEEATTSDNFGF-HMKKSFTWKTLVDNVQKYIRXXXXXXXXXXXXXXIDYFNAKAV 234
            ++ +E      ++GF   +  F W+ + +    Y+               I+     A 
Sbjct: 72  TAVHSEFMHDHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAA 131
Query: 235 FVDKHRVKFAGEERTVSAQNFIIAVGGRPTYP---DIPGARL 273
           F    +       +  +A + +IA GG P+ P    IPGA L
Sbjct: 132 FTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGASL 173

>pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase As Derived From Refined Enzyme: Substrate Crystal Structures At 2 Angstroms Resolution Length = 478

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Query: 158 LGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGF-HMKKSFTWKTLVDNVQKYIRXXXXX 216
           LGGT VNVGC+PKK+    ++ +E      ++GF   +  F W+ + +    Y+      
Sbjct: 54  LGGTXVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAI 113
Query: 217 XXXXXXXXXIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYP---DIPGARL 273
                    I+     A F    +       +  +A + +IA GG P+ P    IPGA L
Sbjct: 114 YQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGASL 173

>pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By Diglutathione-Dinitroso-Iron Length = 478

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Query: 158 LGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGF-HMKKSFTWKTLVDNVQKYIRXXXXX 216
           LGGTCVNVG +PKK+    ++ +E      ++GF   +  F W+ + +    Y+      
Sbjct: 54  LGGTCVNVGXVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAI 113
Query: 217 XXXXXXXXXIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYP---DIPGARL 273
                    I+     A F    +       +  +A + +IA GG P+ P    IPGA L
Sbjct: 114 YQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGASL 173

>pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania Infantum Length = 511

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 56/148 (37%), Gaps = 11/148 (7%)
Query: 134 AASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193
           A +  KKVA+ D            LGGTCVNVGC+PKKL    +   +    S  FG+ M
Sbjct: 44  AVTHKKKVAVVDVQATHGPPLFAALGGTCVNVGCVPKKLMVTGAQYMDLIRESGGFGWEM 103
Query: 194 KKSF---TWKTLVDNVQKYIRXXXXXXXXX-XXXXXIDYFNAKAVFVDKHRVKFAGEE-- 247
            +      WKTL+    K +                + +        D H V     E  
Sbjct: 104 DRESLCPNWKTLIAAKNKVVNSINESYKSMFADTEGLSFHMGFGALQDAHTVVVRKSEDP 163
Query: 248 -----RTVSAQNFIIAVGGRPTYPDIPG 270
                 T+  +  +IA G  PT   +PG
Sbjct: 164 HSDVLETLDTEYILIATGSWPTRLGVPG 191

>pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From Leishmania Infantum In Complex With Nadph And Silver Length = 510

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 56/148 (37%), Gaps = 11/148 (7%)
Query: 134 AASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM 193
           A +  KKVA+ D            LGGTCVNVGC+PKKL    +   +    S  FG+ M
Sbjct: 44  AVTHKKKVAVVDVQATHGPPLFAALGGTCVNVGCVPKKLMVTGAQYMDLIRESGGFGWEM 103
Query: 194 KKSF---TWKTLVDNVQKYIRXXXXXXXXX-XXXXXIDYFNAKAVFVDKHRVKFAGEE-- 247
            +      WKTL+    K +                + +        D H V     E  
Sbjct: 104 DRESLCPNWKTLIAAKNKVVNSINESYKSMFADTEGLSFHMGFGALQDAHTVVVRKSEDP 163
Query: 248 -----RTVSAQNFIIAVGGRPTYPDIPG 270
                 T+  +  +IA G  PT   +PG
Sbjct: 164 HSDVLETLDTEYILIATGSWPTRLGVPG 191

>pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei Length = 492

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 72/170 (42%), Gaps = 18/170 (10%)
Query: 116 YDLCVXXXXXXXXXXXKEAASM-NKKVALFDFVTPSQHGTVW--GLGGTCVNVGCIPKKL 172
           +DL V             AA++  K+VA+ D  T   HG  +   LGGTCVNVGC+PKKL
Sbjct: 5   FDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQT--SHGPPFYAALGGTCVNVGCVPKKL 62
Query: 173 FHRASLLNEEATTSDNFGFHMKKS---FTWKTLV-DNVQKYIRXXXXXXXXXXXXXXIDY 228
               +   +    S  FG+    S     WK L+    +  +               +D+
Sbjct: 63  MVTGAQYMDHLRESAGFGWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDF 122
Query: 229 F------NAKAVFVDKHRV--KFAGEERTVSAQNFIIAVGGRPTYPDIPG 270
           F       +K V V +     K A +ER + A + ++A G  P  P IPG
Sbjct: 123 FLGWGSLESKNVVVVRETADPKSAVKER-LQADHILLATGSWPQMPAIPG 171

>pdb|3IC9|A Chain A, The Structure Of Dihydrolipoamide Dehydrogenase From Colwellia Psychrerythraea 34h. Length = 492

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 6/133 (4%)
Query: 159 GGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKK-SFTWKTLVDNVQ-KYIRXXXXX 216
           G TC  VGC P KL   A+  +  A+ +D FG  + + S   K +   +Q +  R     
Sbjct: 43  GTTCARVGCXPSKLLIAAADASYHASQTDLFGIQVDRISVNGKAVXKRIQTERDRFVGFV 102
Query: 217 XXXXXXXXXIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDI---PGARL 273
                     D     A F+D+H ++   +   V A+  +IA G RP YP+     G+RL
Sbjct: 103 VESVESFDEQDKIRGFAKFLDEHTLQV-DDHSQVIAKRIVIATGSRPNYPEFLAAAGSRL 161
Query: 274 LRTLSLLSGVDPP 286
           L   +L    D P
Sbjct: 162 LTNDNLFELNDLP 174

>pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei Length = 495

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 72/170 (42%), Gaps = 18/170 (10%)
Query: 116 YDLCVXXXXXXXXXXXKEAASM-NKKVALFDFVTPSQHGTVW--GLGGTCVNVGCIPKKL 172
           +DL V             AA++  K+VA+ D  T   HG  +   LGGTCVNVGC+PKKL
Sbjct: 8   FDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQT--SHGPPFYAALGGTCVNVGCVPKKL 65
Query: 173 FHRASLLNEEATTSDNFGFHMKKS---FTWKTLV-DNVQKYIRXXXXXXXXXXXXXXIDY 228
               +   +    S  FG+    S     WK L+    +  +               +D+
Sbjct: 66  MVTGAQYMDHLRESAGFGWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDF 125
Query: 229 F------NAKAVFVDKHRV--KFAGEERTVSAQNFIIAVGGRPTYPDIPG 270
           F       +K V V +     K A +ER + A + ++A G  P  P IPG
Sbjct: 126 FLGWGSLESKNVVVVRETADPKSAVKER-LQADHILLATGSWPQMPAIPG 174

>pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase In The Oxidized And Nadph Reduced State Length = 491

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 67/168 (39%), Gaps = 14/168 (8%)
Query: 116 YDLCVXXXXXXXXXXXKEAASM-NKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFH 174
           +DL V             AA++  K+VA+ D            LGGTCVNVGC+PKKL  
Sbjct: 5   FDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKLMV 64
Query: 175 RASLLNEEATTSDNFGFHMKKS---FTWKTLVD-NVQKYIRXXXXXXXXXXXXXXIDYFN 230
             +   E    S  FG+   ++     WK L+    +  +               +++F 
Sbjct: 65  TGAQYMEHLRESAGFGWEFDRTTLRAEWKKLIAVKDEAVLNINKSYEEMFRDTEGLEFFL 124
Query: 231 AKAVFVDKHRVKF--------AGEERTVSAQNFIIAVGGRPTYPDIPG 270
                  K+ V          A +ER +  +N ++A G  P  P+IPG
Sbjct: 125 GWGSLESKNVVNVRESADPASAVKER-LETENILLASGSWPHMPNIPG 171

>pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And N1-Glutathionylspermidine Disulphide At 0.28-Nm Resolution Length = 487

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 116 YDLCVXXXXXXXXXXXKEAASMNKK-VALFDFVTPSQHGT--VWGLGGTCVNVGCIPKKL 172
           YDL V             AAS++KK VA+ D      HG      LGGTCVNVGC+PKKL
Sbjct: 5   YDLVVIGAGSGGLEAGWNAASLHKKRVAVIDL--QKHHGPPHYAALGGTCVNVGCVPKKL 62
Query: 173 FHRASLLNEEATTSDNFGFHMKKSF---TWKTLVDNVQKYI 210
               +   +    S  FG+ + +      WK L+    K +
Sbjct: 63  MVTGANYMDTIRESAGFGWELDRESVRPNWKALIAAKNKAV 103

>pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata Trypanothione Reductase At 2.6 Angstroms Resolution Length = 487

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 116 YDLCVXXXXXXXXXXXKEAASMNKK-VALFDFVTPSQHGT--VWGLGGTCVNVGCIPKKL 172
           YDL V             AAS++KK VA+ D      HG      LGGTCVNVGC+PKKL
Sbjct: 5   YDLVVIGAGSGGLEAGWNAASLHKKRVAVIDL--QKHHGPPHYAALGGTCVNVGCVPKKL 62
Query: 173 FHRASLLNEEATTSDNFGFHMKKSF---TWKTLVDNVQKYI 210
               +   +    S  FG+ + +      WK L+    K +
Sbjct: 63  MVTGANYMDTIRESAGFGWELDRESVRPNWKALIAAKNKAV 103

>pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase At 2.2 Angstrom Resolution Length = 490

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 116 YDLCVXXXXXXXXXXXKEAASMNKK-VALFDFVTPSQHGT--VWGLGGTCVNVGCIPKKL 172
           YDL V             AAS++KK VA+ D      HG      LGGTCVNVGC+PKKL
Sbjct: 4   YDLVVIGAGSGGLEAGWNAASLHKKRVAVIDL--QKHHGPPHYAALGGTCVNVGCVPKKL 61
Query: 173 FHRASLLNEEATTSDNFGFHMKKSF---TWKTLVDNVQKYI 210
               +   +    S  FG+ + +      WK L+    K +
Sbjct: 62  MVTGANYMDTIRESAGFGWELDRESVRPNWKALIAAKNKAV 102

>pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia Fasciculata At 2.4 Angstroms Resolution Length = 490

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 116 YDLCVXXXXXXXXXXXKEAASMNKK-VALFDFVTPSQHGT--VWGLGGTCVNVGCIPKKL 172
           YDL V             AAS++KK VA+ D      HG      LGGTCVNVGC+PKKL
Sbjct: 4   YDLVVIGAGSGGLEAGWNAASLHKKRVAVIDL--QKHHGPPHYAALGGTCVNVGCVPKKL 61
Query: 173 FHRASLLNEEATTSDNFGFHMKKSF---TWKTLVDNVQKYI 210
               +   +    S  FG+ + +      WK L+    K +
Sbjct: 62  MVTGANYMDTIRESAGFGWELDRESVRPNWKALIAAKNKAV 102

>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding Domain Of The Dihydrolipoamide Acetylase Length = 455

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 15/115 (13%)
Query: 158 LGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK-------KSFTWKTLVDNVQKYI 210
           LGG C+NVGCIP K    AS   E+A  S+  G   +       K   WK  V      +
Sbjct: 37  LGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKVQEWKASV------V 90
Query: 211 RXXXXXXXXXXXXXXIDYFNAKAVFVDKHRVKFAGEE--RTVSAQNFIIAVGGRP 263
           +              ++    +A FVD + V+    +  +T + +N IIA G RP
Sbjct: 91  KKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRP 145

>pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With Trypanothione, And The Structure- Based Discovery Of New Natural Product Inhibitors Length = 486

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 67/168 (39%), Gaps = 14/168 (8%)
Query: 116 YDLCVXXXXXXXXXXXKEAASM-NKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFH 174
           +DL V             AA++  K+VA+ D            LGGTCVNVGC+PKKL  
Sbjct: 5   FDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKLMV 64
Query: 175 RASLLNEEATTSDNFGFHMKKS---FTWKTLVD-NVQKYIRXXXXXXXXXXXXXXIDYFN 230
             +   E    S  FG+   ++     WK L+    +  +               +++F 
Sbjct: 65  TGAQYMEHLRESAGFGWEFDRTTLRAEWKNLIAVKDEAVLNINKSYDEMFRDTEGLEFFL 124
Query: 231 AKAVFVDKHRVKF--------AGEERTVSAQNFIIAVGGRPTYPDIPG 270
                  K+ V          A +ER +  ++ ++A G  P  P+IPG
Sbjct: 125 GWGSLESKNVVNVRESADPASAVKER-LETEHILLASGSWPHMPNIPG 171

>pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With The Inhibitor Quinacrine Mustard Length = 492

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 67/168 (39%), Gaps = 14/168 (8%)
Query: 116 YDLCVXXXXXXXXXXXKEAASM-NKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFH 174
           +DL V             AA++  K+VA+ D            LGGTCVNVGC+PKKL  
Sbjct: 6   FDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKLMV 65
Query: 175 RASLLNEEATTSDNFGFHMKKS---FTWKTLVD-NVQKYIRXXXXXXXXXXXXXXIDYFN 230
             +   E    S  FG+   ++     WK L+    +  +               +++F 
Sbjct: 66  TGAQYMEHLRESAGFGWEFDRTTLRAEWKNLIAVKDEAVLNINKSYDEMFRDTEGLEFFL 125
Query: 231 AKAVFVDKHRVKF--------AGEERTVSAQNFIIAVGGRPTYPDIPG 270
                  K+ V          A +ER +  ++ ++A G  P  P+IPG
Sbjct: 126 GWGSLESKNVVNVRESADPASAVKER-LETEHILLASGSWPHMPNIPG 172

>pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form) Length = 485

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 67/168 (39%), Gaps = 14/168 (8%)
Query: 116 YDLCVXXXXXXXXXXXKEAASM-NKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFH 174
           +DL V             AA++  K+VA+ D            LGGTCVNVGC+PKKL  
Sbjct: 4   FDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKLMV 63
Query: 175 RASLLNEEATTSDNFGFHMKKS---FTWKTLVD-NVQKYIRXXXXXXXXXXXXXXIDYFN 230
             +   E    S  FG+   ++     WK L+    +  +               +++F 
Sbjct: 64  TGAQYMEHLRESAGFGWEFDRTTLRAEWKNLIAVKDEAVLNINKSYDEMFRDTEGLEFFL 123
Query: 231 AKAVFVDKHRVKF--------AGEERTVSAQNFIIAVGGRPTYPDIPG 270
                  K+ V          A +ER +  ++ ++A G  P  P+IPG
Sbjct: 124 GWGSLESKNVVNVRESADPASAVKER-LETEHILLASGSWPHMPNIPG 170

>pdb|2QAE|A Chain A, Crystal Structure Analysis Of Trypanosoma Cruzi Lipoamide Dehydrogenase Length = 468

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 29/130 (22%)
Query: 158 LGGTCVNVGCIPKK-------LFH-------RASLLNEEATTSDNFGFHMKKSFTWKTLV 203
           LGGTC+NVGCIP K       L+H       R  L+  E  T D+     +K    K L 
Sbjct: 37  LGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTMDSAKMQQQKERAVKGLT 96
Query: 204 DNVQKYIRXXXXXXXXXXXXXXIDYFNAKAVFVDKHRVK---FAGEERTVSAQNFIIAVG 260
             V+   +              + Y+  +  F   H ++     G++  +  +  IIA G
Sbjct: 97  GGVEYLFK-----------KNKVTYYKGEGSFETAHSIRVNGLDGKQEMLETKKTIIATG 145
Query: 261 GRPT-YPDIP 269
             PT  P +P
Sbjct: 146 SEPTELPFLP 155

>pdb|1OJT|A Chain A, Structure Of Dihydrolipoamide Dehydrogenase Length = 482

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 15/127 (11%)
Query: 158 LGGTCVNVGCIPKK-LFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRXXXXX 216
           LGG C+NVGCIP K L H A++++E    + N   + +       L       +      
Sbjct: 41  LGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDMLRAYKDGVVSRLTGG 100
Query: 217 XXXXXXXXXIDYFNAKAVFVDKHRVKFA-------------GEERTVSAQNFIIAVGGRP 263
                    +D       F+D H ++ +             GE++ V+ +N IIA G R 
Sbjct: 101 LAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRV 160
Query: 264 T-YPDIP 269
           T  P IP
Sbjct: 161 TKLPFIP 167

>pdb|1BHY|A Chain A, Low Temperature Middle Resolution Structure Of P64k From Masc Data Length = 482

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 15/127 (11%)
Query: 158 LGGTCVNVGCIPKK-LFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRXXXXX 216
           LGG C+NVGCIP K L H A++++E    + N   + +       L       +      
Sbjct: 41  LGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDMLRAYKDGVVSRLTGG 100
Query: 217 XXXXXXXXXIDYFNAKAVFVDKHRVKFA-------------GEERTVSAQNFIIAVGGRP 263
                    +D       F+D H ++ +             GE++ V+ +N IIA G R 
Sbjct: 101 LAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRV 160
Query: 264 T-YPDIP 269
           T  P IP
Sbjct: 161 TKLPFIP 167

>pdb|2EQ6|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 Length = 464

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 4/107 (3%)
Query: 158 LGGTCVNVGCIP-KKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRXXXXX 216
           +GG C+NVGCIP K L H A  L+     ++ FG   K     K L     + ++     
Sbjct: 40  VGGVCLNVGCIPTKALLHAAETLH-HLKVAEGFGLKAKPELDLKKLGGWRDQVVKKLTGG 98
Query: 217 XXXXXXXXXIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRP 263
                    ++     A  V    V+  GE     A++ I+A G  P
Sbjct: 99  VGTLLKGNGVELLRGFARLVGPKEVEVGGER--YGAKSLILATGSEP 143

>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 491

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 65/174 (37%), Gaps = 37/174 (21%)
Query: 116 YDLCVXXXXXXXXXXXKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK-LFH 174
           YDL V            +AA +  KVA+ +  +          GGTC+NVGCIP K L H
Sbjct: 26  YDLIVIGSGPGGYVCAIKAAQLGXKVAVVEKRST--------YGGTCLNVGCIPSKALLH 77
Query: 175 RASLLNEEATTSDNFGFHMK------------KSFTWKTLVDNVQKYIRXXXXXXXXXXX 222
            +   ++     +  G  +             K  T K+ VD V    +           
Sbjct: 78  ASEXFHQAQHGLEALGVEVANPKLNLQKXXAHKDATVKSNVDGVSFLFK----------- 126
Query: 223 XXXIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGARL 273
              ID F      + + +V      GEE+ + A+N +IA G       IPG  +
Sbjct: 127 KNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATG--SDVAGIPGVEV 178

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	296
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	3e-72
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	1e-11
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	4e-72
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	9e-12
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	1e-70
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	2e-11
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	1e-70
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	1e-11
1fec_A	490	Trypanothione reductase; redox-active center, oxid	8e-70
1fec_A	490	Trypanothione reductase; redox-active center, oxid	3e-11
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	2e-69
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	1e-10
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	8e-69
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	3e-11
4dna_A	463	Probable glutathione reductase; structural genomic	2e-68
4dna_A	463	Probable glutathione reductase; structural genomic	9e-11
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	9e-68
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	3e-11
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	2e-67
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	6e-11
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	2e-65
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	3e-11
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	6e-64
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	8e-11
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	7e-62
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	3e-10
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	2e-36
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	2e-32
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	4e-28
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	2e-27
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	2e-27
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	5e-27
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	1e-26
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	2e-26
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	2e-26
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	2e-26
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	3e-26
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	6e-26
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	9e-26
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	1e-25
1ojt_A	482	Surface protein; redox-active center, glycolysis,	2e-25
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	7e-25
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	8e-25
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	5e-05
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	7e-05
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	1e-04
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	2e-04
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	4e-04
3atr_A	453	Conserved archaeal protein; saturating double bond	5e-04
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	6e-04

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519

 Score =  230 bits (588), Expect = 3e-72
 Identities = 82/165 (49%), Positives = 108/165 (65%), Gaps = 5/165 (3%)

Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
           ++YDYDL +IGGGSGG++AAKEAA   KKV + DFVTP+  GT WGLGGTCVNVGCIPKK
Sbjct: 29  KSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKK 88

Query: 172 LFHRASLLNEEATTSDNFGFHM--KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYF 229
           L H+A+LL +    S N+G+ +       W  +++ VQ +I +LN  Y   L + K+ Y 
Sbjct: 89  LMHQAALLGQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYE 148

Query: 230 NAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGA 271
           NA   F+  HR+K     G+E+  SA+ F+IA G RP Y  IPG 
Sbjct: 149 NAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGD 193

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 19/36 (52%), Positives = 24/36 (66%)

Query: 23  NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
           NAGE+TQG+A  +  G  K+  D+ IGIHP CAE  
Sbjct: 464 NAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVF 499

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598

 Score =  231 bits (592), Expect = 4e-72
 Identities = 79/167 (47%), Positives = 105/167 (62%), Gaps = 6/167 (3%)

Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
             YDYDL VIGGGSGG++A KEAA    K A+ D+V P+  GT WGLGGTCVNVGCIPKK
Sbjct: 104 SKYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKK 163

Query: 172 LFHRASLLNEEATTSDNFGFHM---KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDY 228
           L H+A LL+     +++FG+ +   K S  W T+V+ VQ +I +LN  Y+  L  N++ Y
Sbjct: 164 LMHQAGLLSHALEDAEHFGWSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTY 223

Query: 229 FNAKAVFVDKHRVKFAGE---ERTVSAQNFIIAVGGRPTYPDIPGAR 272
            NAK   +  H V+   +     T++    I+A G RP YP+IPGA 
Sbjct: 224 LNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYPEIPGAV 270

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598

 Score = 64.3 bits (157), Expect = 9e-12
 Identities = 24/36 (66%), Positives = 28/36 (77%)

Query: 23  NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
           NAGEITQGYA+ + +GA K DFD  IGIHPTC+E  
Sbjct: 543 NAGEITQGYAVAIKMGATKADFDRTIGIHPTCSETF 578

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488

 Score =  225 bits (575), Expect = 1e-70
 Identities = 79/165 (47%), Positives = 110/165 (66%), Gaps = 6/165 (3%)

Query: 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLF 173
             +DL VIGGGSGG++ AKEAA + KKVA+ D+V PS  GT WGLGGTCVNVGCIPKKL 
Sbjct: 5   QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLM 64

Query: 174 HRASLLNEEATTSDNFGFHM--KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA 231
           H+A+LL      + ++G+ +       WKT+ + VQ ++++LN  +  +L+  K+ YFN 
Sbjct: 65  HQAALLGGMIRDAHHYGWEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNI 124

Query: 232 KAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYP-DIPGAR 272
           KA FVD+H V+     G+   +SA++ +IA GGRP YP  + GA 
Sbjct: 125 KASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGAL 169

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488

 Score = 63.3 bits (155), Expect = 2e-11
 Identities = 19/36 (52%), Positives = 25/36 (69%)

Query: 23  NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
           NAGE+TQG+ALG+  GA        +GIHPTC+E +
Sbjct: 436 NAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSEEV 471

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483

 Score =  225 bits (575), Expect = 1e-70
 Identities = 84/165 (50%), Positives = 107/165 (64%), Gaps = 5/165 (3%)

Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS-QHGTVWGLGGTCVNVGCIPKK 171
           +YDYDL VIGGGS G++ AKEA     +VA  DFV P+   GT WG+GGTCVNVGCIPKK
Sbjct: 7   SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKK 66

Query: 172 LFHRASLLNEEATTSDNFGFHM--KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYF 229
           L H+ASLL E    +  +G+++  K    W  LV +VQ +I+++N     +L   K++Y 
Sbjct: 67  LMHQASLLGEAVHEAAAYGWNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYI 126

Query: 230 NAKAVFVDKH--RVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAR 272
           N    FVD H    K    ERT++AQ F+IAVGGRP YPDIPGA 
Sbjct: 127 NGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDIPGAV 171

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483

 Score = 63.7 bits (156), Expect = 1e-11
 Identities = 14/36 (38%), Positives = 18/36 (50%)

Query: 23  NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
            AGE+ QG+A  +  G         +GIHPT AE  
Sbjct: 436 VAGEVIQGFAAALKSGLTINTLINTVGIHPTTAEEF 471

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490

 Score =  223 bits (570), Expect = 8e-70
 Identities = 51/171 (29%), Positives = 77/171 (45%), Gaps = 12/171 (7%)

Query: 113 TYDYDLCVIGGGSGGISAAKEAASMN-KKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
           +  YDL VIG GSGG+ A   AAS++ K+VA+ D            LGGTCVNVGC+PKK
Sbjct: 1   SRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKK 60

Query: 172 LFHRASLLNEEATTSDNFGFHMKK---SFTWKTLVDNVQKYIRNLNNNYEKEL-EKNKID 227
           L    +   +    S  FG+ + +      WK L+    K +  +N++YE    +   + 
Sbjct: 61  LMVTGANYMDTIRESAGFGWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLT 120

Query: 228 YFNAKAVFVDKHRV-------KFAGEERTVSAQNFIIAVGGRPTYPDIPGA 271
           +        D H V         +    T+  +  ++A G  P +  I G 
Sbjct: 121 FHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEGD 171

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490

 Score = 62.6 bits (153), Expect = 3e-11
 Identities = 15/36 (41%), Positives = 22/36 (61%)

Query: 23  NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
           ++ EI Q  A+ + +GA   DF   IG+HPT AE +
Sbjct: 432 SSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEEL 467

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463

 Score =  221 bits (565), Expect = 2e-69
 Identities = 62/160 (38%), Positives = 89/160 (55%), Gaps = 12/160 (7%)

Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKL 172
           T  +DL  IGGGSGG++ A++AA+  K+VAL +            LGGTCVNVGC+PKK+
Sbjct: 2   TQHFDLIAIGGGSGGLAVAEKAAAFGKRVALIE---------SKALGGTCVNVGCVPKKV 52

Query: 173 FHRASLLNEEATTSDNFGFHM-KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA 231
              AS L E    +  FG      +  W  LV    +YI  +N+ ++  +E+  I   + 
Sbjct: 53  MWYASHLAEAVRDAPGFGVQASGGTLDWPRLVAGRDRYIGAINSFWDGYVERLGITRVDG 112

Query: 232 KAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA 271
            A FVD H ++  G+   +SA + +IA GGRP  P +PGA
Sbjct: 113 HARFVDAHTIEVEGQ--RLSADHIVIATGGRPIVPRLPGA 150

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463

 Score = 60.6 bits (148), Expect = 1e-10
 Identities = 17/36 (47%), Positives = 23/36 (63%)

Query: 23  NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
            A E+ QG+A+ V +GA K DFD  + IHP  AE +
Sbjct: 409 GADEMLQGFAVAVKMGATKADFDNTVAIHPGSAEEL 444

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495

 Score =  220 bits (563), Expect = 8e-69
 Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 12/171 (7%)

Query: 113 TYDYDLCVIGGGSGGISAAKEAASMN-KKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
           +  +DL VIG GSGG+ A   AA++  K+VA+ D  T         LGGTCVNVGC+PKK
Sbjct: 5   SKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKK 64

Query: 172 LFHRASLLNEEATTSDNFGFHMKK---SFTWKTLVDNVQKYIRNLNNNYEKEL-EKNKID 227
           L    +   +    S  FG+          WK L+    + + ++N +YE    +   +D
Sbjct: 65  LMVTGAQYMDHLRESAGFGWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLD 124

Query: 228 YFNAKAVFVDKHRVK-------FAGEERTVSAQNFIIAVGGRPTYPDIPGA 271
           +F        K+ V         +  +  + A + ++A G  P  P IPG 
Sbjct: 125 FFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATGSWPQMPAIPGI 175

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495

 Score = 62.6 bits (153), Expect = 3e-11
 Identities = 15/36 (41%), Positives = 19/36 (52%)

Query: 23  NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
            A EI Q   + + L A   DF   IG+HPT AE +
Sbjct: 436 GAPEIIQAVGVCLRLNAKISDFYNTIGVHPTSAEEL 471

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463

 Score =  218 bits (559), Expect = 2e-68
 Identities = 59/164 (35%), Positives = 86/164 (52%), Gaps = 11/164 (6%)

Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
             +DYDL VIGGGSGG+ + + AA++ KKVA+ +          +  GGTCV  GC+PKK
Sbjct: 2   SAFDYDLFVIGGGSGGVRSGRLAAALGKKVAIAE---------EFRYGGTCVIRGCVPKK 52

Query: 172 LFHRASLLNEEATTSDNFGFHM-KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFN 230
           L+  AS   E    +  FG+ + +  F W  LV   ++ I  L   Y K L     +  +
Sbjct: 53  LYVYASQFAEHFEDAAGFGWTVGESRFDWAKLVAAKEQEIARLEGLYRKGLANAGAEILD 112

Query: 231 AKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD-IPGARL 273
            +A     + VK     +TV+A+  +IAVGG P+  D +PG  L
Sbjct: 113 TRAELAGPNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHEL 156

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463

 Score = 61.0 bits (149), Expect = 9e-11
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 23  NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
           +AGE+ Q   + +  G  K DFD  + +HPT AE +
Sbjct: 411 DAGEMAQLLGISLRAGCTKDDFDRTMAVHPTAAEEL 446

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478

 Score =  217 bits (555), Expect = 9e-68
 Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 13/163 (7%)

Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKL 172
              YD  VIGGGSGG+++A+ AA +  + A+ +            LGGTCVNVGC+PKK+
Sbjct: 18  VASYDYLVIGGGSGGLASARRAAELGARAAVVES---------HKLGGTCVNVGCVPKKV 68

Query: 173 FHRASLLNEEATTSDNFGFHM-KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA 231
               ++ +E      ++GF   +  F W+ + +    Y+  LN  Y+  L K+ I+    
Sbjct: 69  MWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRG 128

Query: 232 KAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYP---DIPGA 271
            A F    +       +  +A + +IA GG P+ P    IPGA
Sbjct: 129 HAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGA 171

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478

 Score = 62.5 bits (153), Expect = 3e-11
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 23  NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAE 56
              E+ QG+A+ V +GA K DFD  + IHPT +E
Sbjct: 439 GCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSE 472

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484

 Score =  216 bits (553), Expect = 2e-67
 Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 11/163 (6%)

Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKL 172
           ++D+DL VIG GSGG+ AA+ A ++ K+VA+ +          + +GGTCV  GC+PKKL
Sbjct: 24  SFDFDLFVIGSGSGGVRAARLAGALGKRVAIAE---------EYRIGGTCVIRGCVPKKL 74

Query: 173 FHRASLLNEEATTSDNFGFHM-KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA 231
           +  AS   +E + S  FG+      F W+ LV    K I  L   Y + L+ + +  + +
Sbjct: 75  YFYASQYAQEFSKSIGFGWKYADPIFNWEKLVAAKNKEISRLEGLYREGLQNSNVHIYES 134

Query: 232 KAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTY-PDIPGARL 273
           +AVFVD+H ++ +     +SA+  +IA G +      I G+ L
Sbjct: 135 RAVFVDEHTLELSVTGERISAEKILIATGAKIVSNSAIKGSDL 177

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484

 Score = 61.8 bits (151), Expect = 6e-11
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 23  NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAE 56
           NAGEI Q   + +     K  FD  + +HPT +E
Sbjct: 431 NAGEIAQLIGISLKGKLTKDIFDKTMAVHPTMSE 464

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479

 Score =  211 bits (540), Expect = 2e-65
 Identities = 58/171 (33%), Positives = 81/171 (47%), Gaps = 20/171 (11%)

Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
            T  YD  VIGGGSGG+++A+ AAS   K  L +            LGGTCVNVGC+PKK
Sbjct: 8   NTKHYDYLVIGGGSGGVASARRAASYGAKTLLVE---------AKALGGTCVNVGCVPKK 58

Query: 172 LFHRASLLNEEATTSDNFGFHM-------KKSFTWKTLVDNVQKYIRNLNNNYEKELEKN 224
           +   AS L    + ++ +G +          +F W         Y+  LN  Y+K LEK 
Sbjct: 59  VMWYASDLATRVSHANEYGLYQNLPLDKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKE 118

Query: 225 KIDYFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPD-IPGA 271
           K+D     A F     V+           SA + ++A GG+  +P+ IPG 
Sbjct: 119 KVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPENIPGF 169

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479

 Score = 62.5 bits (153), Expect = 3e-11
 Identities = 16/36 (44%), Positives = 24/36 (66%)

Query: 23  NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
           ++ EI QG+ + + +GA K DFD  + IHPT AE +
Sbjct: 432 SSAEILQGFGVAIKMGATKADFDNCVAIHPTSAEEL 467

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450

 Score =  206 bits (528), Expect = 6e-64
 Identities = 64/161 (39%), Positives = 89/161 (55%), Gaps = 13/161 (8%)

Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKL 172
           T  YD   IGGGSGGI++   AA   +K AL +            LGGTCVNVGC+PKK+
Sbjct: 2   TKHYDYIAIGGGSGGIASINRAAMYGQKCALIEA---------KELGGTCVNVGCVPKKV 52

Query: 173 FHRASLLNEEA-TTSDNFGFHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFN 230
              A+ + E       ++GF      F W+TL+ +   YI  ++ +YE  L KN +D   
Sbjct: 53  MWHAAQIREAIHMYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIK 112

Query: 231 AKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA 271
             A FVD   ++  GE  T++A + +IA GGRP++PDIPG 
Sbjct: 113 GFARFVDAKTLEVNGE--TITADHILIATGGRPSHPDIPGV 151

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450

 Score = 61.4 bits (150), Expect = 8e-11
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 23  NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAE 56
              E+ QG+A+ + +GA K+DFD  + IHPT AE
Sbjct: 411 GMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAE 444

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500

 Score =  202 bits (517), Expect = 7e-62
 Identities = 66/169 (39%), Positives = 94/169 (55%), Gaps = 21/169 (12%)

Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFH 174
            YDL VIGGGSGG++AA+ AA  N KVAL +            LGGTCVNVGC+PKK+  
Sbjct: 2   VYDLIVIGGGSGGMAAARRAARHNAKVALVE---------KSRLGGTCVNVGCVPKKIMF 52

Query: 175 RASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAV 234
            A+ +++    S ++GF  K SF    LV+   KYI+ LNN Y + L K+K+D +   A 
Sbjct: 53  NAASVHDILENSRHYGFDTKFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTAS 112

Query: 235 FVDKHRVKFAG------------EERTVSAQNFIIAVGGRPTYPDIPGA 271
           F+ ++R+   G             E  +  +N +IAVG +P +P + G 
Sbjct: 113 FLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPVKGI 161

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 19/36 (52%), Positives = 24/36 (66%)

Query: 23  NAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
           NA EI QG+A+ + + A K+DFD  I IHPT AE  
Sbjct: 457 NADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEF 492

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523

 Score =  135 bits (342), Expect = 2e-36
 Identities = 42/165 (25%), Positives = 68/165 (41%), Gaps = 19/165 (11%)

Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKL 172
             +YD   IGGG+ G   +    +M  +  + D     +      LGG+C +  C+P  L
Sbjct: 41  PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVD-----RWPF---LGGSCPHNACVPHHL 92

Query: 173 FHRASLLNEEATTSDNFGFHM-----KKSFTWKTLVDNVQKYIRNLN--NNYEKELEKNK 225
           F   +     A      G +      +K    K +VD  +      +   N++ + + N 
Sbjct: 93  FSDCAAELMLA--RTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNL 150

Query: 226 IDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG 270
               N  A  +D H V+ AG+     A+N I+AVG  P   D+PG
Sbjct: 151 EYILNCPAKVIDNHTVEAAGK--VFKAKNLILAVGAGPGTLDVPG 193

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467

 Score =  123 bits (311), Expect = 2e-32
 Identities = 45/165 (27%), Positives = 67/165 (40%), Gaps = 16/165 (9%)

Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIP-KK 171
                + VIG G   ++AA +A     +V L +       GT   +GGTCVNVGC+P K 
Sbjct: 2   EPPVQVAVIGSGGAAMAAALKAVEQGAQVTLIE------RGT---IGGTCVNVGCVPSKI 52

Query: 172 LFHRASLLNEEATTSDNFGFHMKK-SFTWKTLVDNVQKYIRNL-NNNYEKELEK-NKIDY 228
           +   A + +    +  + G      +     L+   Q  +  L +  YE  L     I  
Sbjct: 53  MIRAAHIAHLRRESPFDGGIAATVPTIDRSKLLAQQQARVDELRHAKYEGILGGNPAITV 112

Query: 229 FNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPG 270
            + +A F D   +      G ER V     ++A G  P  P IPG
Sbjct: 113 VHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPG 157

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492

 Score =  111 bits (281), Expect = 4e-28
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 14/164 (8%)

Query: 109 NNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCI 168
           N  +  + D+ +IG G+ G+ A + A     KV L +             G TC  VGC+
Sbjct: 2   NAMKVINVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA---------YGTTCARVGCM 52

Query: 169 PKKLFHRASLLNEEATTSDNFGFHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEK-NKI 226
           P KL   A+  +  A+ +D FG  + + S   K ++  +Q           + +E  ++ 
Sbjct: 53  PSKLLIAAADASYHASQTDLFGIQVDRISVNGKAVMKRIQTERDRFVGFVVESVESFDEQ 112

Query: 227 DYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG 270
           D     A F+D+H ++   +   V A+  +IA G RP       
Sbjct: 113 DKIRGFAKFLDEHTLQ-VDDHSQVIAKRIVIATGSRPN--YPEF 153

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476

 Score =  109 bits (276), Expect = 2e-27
 Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 11/165 (6%)

Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFD-FVTPSQHGTVWGLGGTCVNVGCIPKK 171
           +  +D+ VIG G GG  AA ++A +  K AL + +           LGGTC+NVGCIP K
Sbjct: 1   SQKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTA---LGGTCLNVGCIPSK 57

Query: 172 -LFHRASLLNEEATTSDNFGFHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYF 229
            L   +   +E   +    G    + +    T++    + +RNL       ++ N +  F
Sbjct: 58  ALLDSSYKFHEAHESFKLHGISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLF 117

Query: 230 NAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGA 271
                 +   +V+     G  + +  +N I+A G +P   +IP A
Sbjct: 118 EGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPV--EIPPA 160

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464

 Score =  109 bits (275), Expect = 2e-27
 Identities = 47/158 (29%), Positives = 66/158 (41%), Gaps = 15/158 (9%)

Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK-LF 173
            YDL VIG G GG  AA  AA +  KV   +            +GG C+NVGCIP K L 
Sbjct: 6   TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE---------VGGVCLNVGCIPTKALL 56

Query: 174 HRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA 233
           H A+        ++ FG   K     K L     + ++ L       L+ N ++     A
Sbjct: 57  H-AAETLHHLKVAEGFGLKAKPELDLKKLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFA 115

Query: 234 VFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA 271
             V    V+  GE     A++ I+A G  P   ++ G 
Sbjct: 116 RLVGPKEVEVGGE--RYGAKSLILATGSEPL--ELKGF 149

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455

 Score =  108 bits (272), Expect = 5e-27
 Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 16/161 (9%)

Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK-LF 173
           + +  V+G G GG  AA  AA + +KV + +            LGG C+NVGCIP K L 
Sbjct: 3   ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN---------LGGVCLNVGCIPSKALI 53

Query: 174 HRASLLNEEATTSDNFGFHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK 232
             AS   E+A  S+  G   +  +  +  + +     ++ L    E  L+ NK++    +
Sbjct: 54  S-ASHRYEQAKHSEEMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGE 112

Query: 233 AVFVDKH--RVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA 271
           A FVD +  RV      +T + +N IIA G RP   ++P  
Sbjct: 113 AYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPI--ELPNF 151

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464

 Score =  107 bits (269), Expect = 1e-26
 Identities = 45/160 (28%), Positives = 66/160 (41%), Gaps = 15/160 (9%)

Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK-LF 173
            YD+ V+G G GG  AA  AA +    A+ +             GG C+NVGCIP K L 
Sbjct: 3   HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPKY---------WGGVCLNVGCIPSKALL 53

Query: 174 HRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA 233
             A L++     +  FG   + +F +    D  +K            ++KNKI   +   
Sbjct: 54  RNAELVHIFTKDAKAFGISGEVTFDYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYG 113

Query: 234 VFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPG 270
            F D + +      G   +V+  N IIA G       +PG
Sbjct: 114 TFADANTLLVDLNDGGTESVTFDNAIIATGSSTR--LVPG 151

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455

 Score =  106 bits (268), Expect = 2e-26
 Identities = 46/157 (29%), Positives = 64/157 (40%), Gaps = 12/157 (7%)

Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHR 175
           YDL VIG G GG  AA  AA +  KV + +     +      LGGTC+ VGCIP K    
Sbjct: 2   YDLLVIGAGPGGYVAAIRAAQLGMKVGVVE-----KEKA---LGGTCLRVGCIPSKALLE 53

Query: 176 ASLLNEEATTSDNFGFHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAV 234
            +    EA      G  +K        L+ +  K ++      E   +KN I      A 
Sbjct: 54  TTERIYEAKKGL-LGAKVKGVELDLPALMAHKDKVVQANTQGVEFLFKKNGIARHQGTAR 112

Query: 235 FVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA 271
           F+ + +V        + A+  +IA G  P     P A
Sbjct: 113 FLSERKVLVEETGEELEARYILIATGSAPL--IPPWA 147

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474

 Score =  107 bits (269), Expect = 2e-26
 Identities = 47/167 (28%), Positives = 73/167 (43%), Gaps = 18/167 (10%)

Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
           Q  D D+ VIG G GG  AA +AA +  K    +     ++ T   LGGTC+NVGCIP K
Sbjct: 3   QPIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIE-----KNET---LGGTCLNVGCIPSK 54

Query: 172 -LFHRASLLNEEATTSD--NFGFHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKID 227
            L +  S     A  +D  + G  M +       +++     ++ L        ++NK+ 
Sbjct: 55  ALLN-NSHYYHMAHGTDFASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVV 113

Query: 228 YFNAKAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGA 271
           + N       K++V      G  + +  +N +IA G   T    PG 
Sbjct: 114 HVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVT--PFPGI 158

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458

 Score =  106 bits (268), Expect = 2e-26
 Identities = 38/165 (23%), Positives = 62/165 (37%), Gaps = 19/165 (11%)

Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
           QT    L +IGGG GG  AA  A  +     L +            LGGTC+N+GCIP K
Sbjct: 2   QTIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQA---------LGGTCLNIGCIPSK 52

Query: 172 -LFHRASLLNEEATTSDNFGFH----MKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKI 226
            L H  +    +A+                      V      +  L       L+K+ +
Sbjct: 53  ALIH-VAEQFHQASRFTEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGV 111

Query: 227 DYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA 271
              +  A  +D  +V+  G+   +  ++ ++A G      ++P  
Sbjct: 112 KVVHGWAKVLDGKQVEVDGQ--RIQCEHLLLATGSSSV--ELPML 152

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468

 Score =  106 bits (267), Expect = 3e-26
 Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 16/162 (9%)

Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK-LFH 174
           YD+ VIGGG GG  A+ +AA +  K A  +     + G    LGGTC+NVGCIP K L H
Sbjct: 3   YDVVVIGGGPGGYVASIKAAQLGMKTACVE-----KRGA---LGGTCLNVGCIPSKALLH 54

Query: 175 RASLLNEEATTSDNFGFHMKK--SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK 232
              L ++       +G    +  +     +    ++ ++ L    E   +KNK+ Y+  +
Sbjct: 55  ATHLYHDAHANFARYGLMGGEGVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGE 114

Query: 233 AVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGA 271
             F   H ++     G++  +  +  IIA G  PT  ++P  
Sbjct: 115 GSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPT--ELPFL 154

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491

 Score =  105 bits (265), Expect = 6e-26
 Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 15/162 (9%)

Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK-LF 173
            YDL VIG G GG   A +AA +  KVA+ +     +  T    GGTC+NVGCIP K L 
Sbjct: 25  AYDLIVIGSGPGGYVCAIKAAQLGMKVAVVE-----KRST---YGGTCLNVGCIPSKALL 76

Query: 174 HRASLLNEEATTSDNFGFHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK 232
           H + + ++     +  G  +       + ++ +    +++  +      +KNKID F   
Sbjct: 77  HASEMFHQAQHGLEALGVEVANPKLNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGT 136

Query: 233 AVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGA 271
              + + +V      GEE+ + A+N +IA G       IPG 
Sbjct: 137 GKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVA--GIPGV 176

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470

 Score =  105 bits (264), Expect = 9e-26
 Identities = 49/162 (30%), Positives = 71/162 (43%), Gaps = 15/162 (9%)

Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK-LF 173
           + D+ +IGGG GG  AA +AA +  K    +     + G    LGGTC+NVGCIP K L 
Sbjct: 6   ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIE-----KRGA---LGGTCLNVGCIPSKALL 57

Query: 174 HRASLLNEEATTSDNFGFHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK 232
           H + + +E   +  N G  +         ++    K + NL    E   +KNK+ Y    
Sbjct: 58  HSSHMYHEAKHSFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGY 117

Query: 233 AVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGA 271
             FV    +      GE   V  ++ IIA G       +PG 
Sbjct: 118 GKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVK--SLPGV 157

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466

 Score =  104 bits (262), Expect = 1e-25
 Identities = 36/162 (22%), Positives = 50/162 (30%), Gaps = 20/162 (12%)

Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK-LF 173
            YD+ VIG G  G   A   A     V + D       G    LGG C+  GC+P K + 
Sbjct: 4   KYDVVVIGAGGAGYHGAFRLAKAKYNVLMAD-----PKGE---LGGNCLYSGCVPSKTVR 55

Query: 174 HRASLLNEEATTSDNFG--FHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA 231
                     T   N             K   D VQ+       +     +   + ++  
Sbjct: 56  E-VIQTAWRLTNIANVKIPLDFSTVQDRK---DYVQE--LRFKQHKRNMSQYETLTFYKG 109

Query: 232 KAVFVDKHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPG 270
                D   V      G+E     +  IIA G       +PG
Sbjct: 110 YVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAKLRLPG 151

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482

 Score =  104 bits (261), Expect = 2e-25
 Identities = 50/175 (28%), Positives = 73/175 (41%), Gaps = 26/175 (14%)

Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
              +YD+ V+GGG GG SAA  AA    KVA+ +     ++ T   LGG C+NVGCIP K
Sbjct: 3   ADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVE-----RYKT---LGGVCLNVGCIPSK 54

Query: 172 -LFHRASLLNEEATTSDNFGFHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYF 229
            L H  + + +E       G    +       L       +  L        +  K+D  
Sbjct: 55  ALLH-NAAVIDEVRHLAANGIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVI 113

Query: 230 NAKAVFVDKHRVK-------------FAGEERTVSAQNFIIAVGGRPTYPDIPGA 271
                F+D H ++               GE++ V+ +N IIA G R T   +P  
Sbjct: 114 QGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVT--KLPFI 166

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499

 Score =  102 bits (257), Expect = 7e-25
 Identities = 34/168 (20%), Positives = 62/168 (36%), Gaps = 20/168 (11%)

Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHR 175
             + ++GGG  G  AA  AA+ + +      +         G+GG  V   C+P K F  
Sbjct: 3   TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCD------GIGGAAVLDDCVPSKTFIA 56

Query: 176 ASLLNEEATTSDNFGFHMKK---SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK 232
           ++ L  E   + + GFH+       +   +   V+      + +   +L    +     +
Sbjct: 57  STGLRTELRRAPHLGFHIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGR 116

Query: 233 AVFVD------KHRVKFA---GEERTVSAQNFIIAVGGRPTYPDIPGA 271
              +D      +HR+K     G      A   ++A G  P    +P A
Sbjct: 117 GELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPR--ILPSA 162

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478

 Score =  102 bits (256), Expect = 8e-25
 Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 22/169 (13%)

Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK-LF 173
            +D+ +IGGG  G  AA +AA +    A  +     + G    LGGTC+NVGCIP K L 
Sbjct: 5   SHDVVIIGGGPAGYVAAIKAAQLGFNTACVE-----KRGK---LGGTCLNVGCIPSKALL 56

Query: 174 HRASLLNEEATTSDNFG--FHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA 231
           + + L ++  T +   G   +                 ++ L    E   +KNK+ Y+  
Sbjct: 57  NNSHLFHQMHTEAQKRGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKG 116

Query: 232 KAVFVDKHRVKFAGEE---------RTVSAQNFIIAVGGRPTYPDIPGA 271
              F D+ +++    +           +  +N I+A G   T    PG 
Sbjct: 117 NGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVT--PFPGI 163

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 54/330 (16%), Positives = 91/330 (27%), Gaps = 107/330 (32%)

Query: 25  GEITQGYA--LGVMLGAYKQDFDA------------------LIGIHPTCAEAISLSWI- 63
           GE    Y   L V   A+  +FD                   +I      +  + L W  
Sbjct: 12  GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71

Query: 64  --KGYNIEPEVIK--LHTPYLVLA---KARFLLPTLECQEVYHDGRFYDYLDNNFQTY-D 115
             K   +  + ++  L   Y  L    K     P++    +Y + R  D L N+ Q +  
Sbjct: 72  LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM-TRMYIEQR--DRLYNDNQVFAK 128

Query: 116 YD----------------------LCVIG-GGSGGISAAKEAASMNKKVALFDFVTPSQH 152
           Y+                      + + G  GSG    A +     K     DF      
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF------ 182

Query: 153 GTVWGLGGTCVNVG--CIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYI 210
              W      +N+     P+ +     L         N+      S   K  + ++Q  +
Sbjct: 183 KIFW------LNLKNCNSPETVL--EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 211 RNL--NNNYEKEL-------EKNKIDYFN----------------------AKAVFVDKH 239
           R L  +  YE  L            + FN                         + +D H
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 240 RVKFAGEERTVSAQNFIIAVGGRPTYPDIP 269
            +    +E        +  +  RP   D+P
Sbjct: 295 SMTLTPDE---VKSLLLKYLDCRPQ--DLP 319

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Length = 372

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD-FVTPSQHGTVWGLGG 160
            YDL +IG GS G +A   A      V + D  + P QHG+  G   
Sbjct: 2   KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHHGDTR 48

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* Length = 660

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 13/82 (15%)

Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
           +    D  VIGGG  G+ AA           +   +   +  +    GG           
Sbjct: 2   KVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQ--------- 52

Query: 172 LFHRASLLNEEATTSDNFGFHM 193
               ASL N + +  DN   H 
Sbjct: 53  ----ASLGNSKMSDGDNEDLHF 70

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD-FVTPSQHGTVWGLGG 160
           YD+ V+GGG  G++ A + A    +V + +     +++G   G   
Sbjct: 5   YDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFNENGGTSGAER 50

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... Length = 621

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 16/84 (19%)

Query: 110 NFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIP 169
               +++D  V+G G  G+ AA   +      A    + P++  TV   GG         
Sbjct: 13  PVVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSHTVAAQGGIN------- 65

Query: 170 KKLFHRASLLNEEATTSDNFGFHM 193
                 A+L N E    DN+ +H 
Sbjct: 66  ------AALGNME---DDNWRWHF 80

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* Length = 588

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 16/87 (18%)

Query: 110 NFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIP 169
                ++D  VIG G  G+ AA + +   +  AL   V P++  TV   GG         
Sbjct: 2   KLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGIT------- 54

Query: 170 KKLFHRASLLNEEATTSDNFGFHMKKS 196
                  +L N      DN+ +HM  +
Sbjct: 55  ------VALGNTH---EDNWEWHMYDT 72

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFD 145
              YD+ +IGGG  G SAA + +    K+ L D
Sbjct: 4   ELKYDVLIIGGGFAGSSAAYQLSRRGLKILLVD 36

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	296
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	99.94
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	99.91
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	99.91
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	99.91
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	99.88
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	99.87
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	99.87
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.86
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	99.86
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	99.86
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	99.86
1fec_A	490	Trypanothione reductase; redox-active center, oxid	99.86
4dna_A	463	Probable glutathione reductase; structural genomic	99.86
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.85
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	99.85
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	99.85
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	99.85
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	99.85
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	99.84
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	99.84
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	99.84
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	99.84
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	99.83
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	99.83
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	99.83
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	99.83
1ojt_A	482	Surface protein; redox-active center, glycolysis,	99.82
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	99.81
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	99.81
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	99.78
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	99.77
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.72
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.68
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.66
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.53
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.52
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.52
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.52
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.51
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.51
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.5
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.5
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.49
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.48
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.48
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.47
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.47
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.46
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.46
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.46
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.46
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.42
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.42
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.42
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.42
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.42
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.39
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	99.37
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	99.33
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.33
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	99.33
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	99.31
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.3
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	99.29
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	99.26
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	99.25
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	99.25
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.25
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	99.24
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	99.24
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.24
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	99.24
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.24
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	99.24
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.23
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.23
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	99.23
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	99.23
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.22
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	99.22
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	99.21
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	99.21
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.21
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	99.21
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	99.2
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.19
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.18
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.18
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	99.17
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.16
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	99.16
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.15
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	99.14
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.12
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.11
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.11
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.1
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	99.09
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.09
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.09
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	99.09
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	99.08
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.07
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.06
3dme_A	369	Conserved exported protein; structural genomics, P	99.06
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	99.05
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.05
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.05
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.03
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	99.01
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.99
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.99
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.99
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.99
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.98
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.97
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.96
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.96
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.95
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.95
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.95
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.94
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.94
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.94
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.92
4dna_A	463	Probable glutathione reductase; structural genomic	98.92
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.91
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.91
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.91
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.9
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.9
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.89
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.89
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.89
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.89
3atr_A	453	Conserved archaeal protein; saturating double bond	98.89
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.89
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.87
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.87
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.87
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.87
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.86
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.86
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.86
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.86
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.86
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.86
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.86
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.85
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.85
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.85
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.84
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.84
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.84
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	98.84
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.84
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.83
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.83
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.83
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.82
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.82
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.81
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.81
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.8
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.79
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.78
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.78
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.77
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.77
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.76
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.76
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.75
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.75
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.75
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.74
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.73
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.72
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.72
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.72
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.72
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.71
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.71
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.71
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.71
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.71
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	98.71
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.7
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.7
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.7
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.7
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.69
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.68
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.68
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.67
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.67
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.67
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.66
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.66
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.65
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.65
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.65
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.64
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.64
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.64
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.64
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.63
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.63
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.62
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.62
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.62
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	98.62
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.62
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.62
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.61
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.6
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.59
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.59
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.57
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.56
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.56
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.56
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.56
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.55
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.55
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.55
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.55
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.55
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.54
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.53
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.53
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.53
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.53
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.52
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.51
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.51
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.51
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.5
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.49
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.49
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.47
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.46
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.46
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.43
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	98.43
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	98.42
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.4
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.38
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.37
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.37
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.36
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.35
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.35
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.34
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.34
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.34
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.33
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	98.31
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	98.3
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.3
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.3
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	98.27
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.26
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	98.26
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	98.25
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.22
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.19
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	98.18
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	98.17
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.15
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.15
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	98.14
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.14
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.11
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.09
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.02
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	98.0
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	97.98
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.98
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.97
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.96
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.96
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.96
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.93
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.89
4fk1_A	304	Putative thioredoxin reductase; structural genomic	97.89
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	97.87
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.76
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.74
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	97.73
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.7
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.69
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.62
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	97.57
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	97.48
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.42
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.41
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.39
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	97.36
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.31
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	97.3
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.25
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	97.18
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.11
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.25
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.21
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.15
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.97
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	95.9
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.84
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	95.64
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	95.53
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.32
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	95.3
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	95.24
3c85_A	183	Putative glutathione-regulated potassium-efflux S	95.15
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	95.02
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	94.82
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	94.78
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	94.7
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	94.68
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	94.47
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	94.41
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	94.3
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	93.8
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	93.8
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	93.77
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	93.72
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	93.59
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	93.58
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	93.56
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	93.53
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	93.5
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	93.43
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	93.4
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	93.4
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	93.34
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	93.31
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	93.29
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	93.18
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	93.13
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	93.11
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	93.1
4g65_A	461	TRK system potassium uptake protein TRKA; structur	92.99
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	92.93
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	92.91
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	92.84
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	92.79
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	92.77
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	92.76
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	92.72
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	92.71
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	92.68
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	92.65
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	92.64
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	92.61
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	92.54
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	92.53
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	92.51
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	92.5
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	92.38
3tl2_A	315	Malate dehydrogenase; center for structural genomi	92.22
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	92.2
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	92.13
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	92.12
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	92.12
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	92.07
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	91.98
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	91.86
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	91.84
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	91.81
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	91.81
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	91.79
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	91.73
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	91.72
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	91.68
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	91.65
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	91.62
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	91.54
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	91.51
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	91.47
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	91.46
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	91.45
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	91.44
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	91.36
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	91.34
3qha_A	296	Putative oxidoreductase; seattle structural genomi	91.32
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	91.29
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	91.28
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	91.26
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	91.2
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	91.11
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	91.1
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	91.06
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	91.02
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	90.98
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	90.94
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	90.86
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	90.83
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	90.81
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	90.8
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	90.78
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	90.73
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	90.61
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	90.6
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	90.56
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	90.52
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	90.52
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	90.47
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	90.47
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	90.43
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	90.35
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	90.31
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	90.16
4ezb_A	317	Uncharacterized conserved protein; structural geno	90.13
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	90.08
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	90.01
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	89.94
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	89.94
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	89.92
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	89.87
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	89.84
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	89.83
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	89.74
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	89.73
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	89.68
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	89.67
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	89.61
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	89.6
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	89.56
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	89.55
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	89.54
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	89.48
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	89.43
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	89.39
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	89.36
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	89.36
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	89.32
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	89.31
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	89.26
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	89.21
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	89.17
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	89.08
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	89.05
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	89.02
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	88.99
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	88.96
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	88.92
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	88.83
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	88.82
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	88.78
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	88.73
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	88.68
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	88.66
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	88.65
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	88.6
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	88.6
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	88.57
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	88.52
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	88.51
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	88.35
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	88.34
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	88.28
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	88.27
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	88.2
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	88.18
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	88.11
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	88.09
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	88.07
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	88.04
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	88.0
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	87.93
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	87.91
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	87.86
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	87.86
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	87.85
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	87.84
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	87.75
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	87.73
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	87.72
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	87.64
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	87.57
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	87.54
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	87.52
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	87.52
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	87.43
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	87.42
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	87.41
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	87.39
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	87.37
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	87.36
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	87.36
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	87.28
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	87.25
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	87.24
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	87.24
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	87.21
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	87.19
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	87.08
3aw8_A	369	PURK, phosphoribosylaminoimidazole carboxylase, AT	86.93
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	86.88

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=99.94  E-value=2.2e-26  Score=215.36  Aligned_cols=181  Identities=44%  Similarity=0.784  Sum_probs=152.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhh-cccccCcc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEAT-TSDNFGFH  192 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~g~~  192 (296)
                      .+|||+||||||+|+.+|.++++.|.+|+|||+.++...+.++.+||+|.|+||+|++.+.+.....+... ....||+.
T Consensus        41 ydYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi~  120 (542)
T 4b1b_A           41 YDYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWK  120 (542)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTEE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCcc
Confidence            57999999999999999999999999999999555555666778999999999999999999888877665 45668887


Q ss_pred             ccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE--c---ceeEEEEeCeEEEcCCCCCCCC
Q psy7665         193 MKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF--A---GEERTVSAQNFIIAVGGRPTYP  266 (296)
Q Consensus       193 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v--~---g~~~~~~a~~vV~AtG~~p~~p  266 (296)
                      ... .++|..+..+.+...+.+...+...+++.+|+++.+.+.+.+++++.+  .   ++.+.+.+|++|+|||++|.+|
T Consensus       121 ~~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a~f~~~~~v~V~~~~~~~~~~~i~a~~iiIATGs~P~~P  200 (542)
T 4b1b_A          121 FDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGCRPHIP  200 (542)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEEEETTEEEEEEC--CCCEEEEEEEEEEECCCEEECCC
T ss_pred             cCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcCCCcceEeecccCCceEEEeeeeEEeccCCCCCCC
Confidence            665 889999999999999988888888899999999999999999998876  2   3457899999999999999998


Q ss_pred             CC-CCCccceeec--ccC-CCCCCcEEEeecc
Q psy7665         267 DI-PGARLLRTLS--LLS-GVDPPTLIFLEHI  294 (296)
Q Consensus       267 ~i-~G~~~~~~~s--~~~-~~~~~~~~~~~~~  294 (296)
                      ++ ++.++.+++|  ++. .+.|++++||+++
T Consensus       201 ~~~~~~~~~~~ts~~~l~l~~lP~~lvIIGgG  232 (542)
T 4b1b_A          201 DDVEGAKELSITSDDIFSLKKDPGKTLVVGAS  232 (542)
T ss_dssp             SSSBTHHHHCBCHHHHTTCSSCCCSEEEECCS
T ss_pred             CcccCCCccccCchhhhccccCCceEEEECCC
Confidence            64 4555667777  344 5667889998764

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=99.91  E-value=1.4e-23  Score=196.54  Aligned_cols=181  Identities=48%  Similarity=0.830  Sum_probs=150.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..|||+||||||+|+.+|.+|++.|++|+|||+....+.++.+.+||+|.+.+|+|++.+...............+++..
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~~~  110 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWKV  110 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCccc
Confidence            56899999999999999999999999999999433334455668999999999999999998888888777788888876


Q ss_pred             cc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCCCCC
Q psy7665         194 KK--SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDI  268 (296)
Q Consensus       194 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~p~i  268 (296)
                      ..  .++|..+..+.+.+.+.+...+...++..+++++.+.+.+.+.+.+.+   +|+..++.||+||+|||++|+.|++
T Consensus       111 ~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p~~p~i  190 (519)
T 3qfa_A          111 EETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGI  190 (519)
T ss_dssp             CSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCCCEEEEEEEEECCCEEECCCCC
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEcCCCCEEEEECCEEEEECCCCcCCCCC
Confidence            53  789999999998888888877777888899999999988888888877   3434579999999999999999999


Q ss_pred             CCCccceeec--ccC-CCCCCcEEEeecc
Q psy7665         269 PGARLLRTLS--LLS-GVDPPTLIFLEHI  294 (296)
Q Consensus       269 ~G~~~~~~~s--~~~-~~~~~~~~~~~~~  294 (296)
                      ||.++++.++  ++. ...|++++||+.+
T Consensus       191 ~G~~~~~~t~~~~~~l~~~~~~vvVIGgG  219 (519)
T 3qfa_A          191 PGDKEYCISSDDLFSLPYCPGKTLVVGAS  219 (519)
T ss_dssp             TTHHHHCBCHHHHTTCSSCCCSEEEECCS
T ss_pred             CCccCceEcHHHHhhhhhcCCeEEEECCc
Confidence            9987776665  333 3457778888654

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=99.91  E-value=1.8e-23  Score=194.44  Aligned_cols=181  Identities=45%  Similarity=0.802  Sum_probs=148.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..|||+|||||++|+.+|.+|++.|++|+|||+....+.+++..+||+|.+.+|+|++.+...............+|+..
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~   84 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWEV   84 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCccc
Confidence            56899999999999999999999999999999422322333458999999999999999998888888888788888876


Q ss_pred             cc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCCCC-
Q psy7665         194 KK--SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPD-  267 (296)
Q Consensus       194 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~p~-  267 (296)
                      ..  .++|..+..+.+.+.+.+...+...++..+++++.++..+.+.+.+.+   +|+...+.||+||+|||++|..|+ 
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~~  164 (488)
T 3dgz_A           85 AQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQ  164 (488)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEESSSSEEEEECTTSCEEEEEEEEEEECCCEEECCCSS
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCceEEEECCEEEEcCCCCCCCCCC
Confidence            53  789999999999888888877777888899999999888888888777   344468999999999999999998 


Q ss_pred             CCCCccceeec--ccC-CCCCCcEEEeecc
Q psy7665         268 IPGARLLRTLS--LLS-GVDPPTLIFLEHI  294 (296)
Q Consensus       268 i~G~~~~~~~s--~~~-~~~~~~~~~~~~~  294 (296)
                      +||.++..+++  ++. ...|++++|++++
T Consensus       165 i~G~~~~~~~~~~~~~~~~~~~~vvViGgG  194 (488)
T 3dgz_A          165 VKGALEYGITSDDIFWLKESPGKTLVVGAS  194 (488)
T ss_dssp             CBTHHHHCBCHHHHTTCSSCCCSEEEECCS
T ss_pred             CCCcccccCcHHHHHhhhhcCCeEEEECCC
Confidence            99987666665  333 4456778888654

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=99.91  E-value=2.5e-23  Score=193.18  Aligned_cols=181  Identities=48%  Similarity=0.826  Sum_probs=148.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCC-CCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQ-HGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFH  192 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~-~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~  192 (296)
                      ..|||+|||||++|+.+|.+|++.|++|+|||+..... .++++.+||+|.+.+|+|++.+...............|++.
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~g~~   87 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGWN   87 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhcCcc
Confidence            46899999999999999999999999999999322222 45666799999999999999999888888887777888877


Q ss_pred             ccc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE--cceeEEEEeCeEEEcCCCCCCCCCC
Q psy7665         193 MKK--SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF--AGEERTVSAQNFIIAVGGRPTYPDI  268 (296)
Q Consensus       193 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v--~g~~~~~~a~~vV~AtG~~p~~p~i  268 (296)
                      ...  .++|..+..+.+.+.+.+...+...++..+++++.+...+.+.+.+.+  .++...+.+|+||+|||++|..|++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~d~lviATGs~p~~p~i  167 (483)
T 3dgh_A           88 VDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRPRYPDI  167 (483)
T ss_dssp             CCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEECCCEEECCCSS
T ss_pred             cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEccCCEEEEEeCCCeEEEEcCEEEEeCCCCcCCCCC
Confidence            654  679999999998888888777777888889999999988888888877  2223579999999999999999999


Q ss_pred             CCCccceeec--ccC-CCCCCcEEEeecc
Q psy7665         269 PGARLLRTLS--LLS-GVDPPTLIFLEHI  294 (296)
Q Consensus       269 ~G~~~~~~~s--~~~-~~~~~~~~~~~~~  294 (296)
                      ||.+++.+++  ++. ...|++++|++.+
T Consensus       168 ~G~~~~~~~~~~~~~~~~~~~~vvViGgG  196 (483)
T 3dgh_A          168 PGAVEYGITSDDLFSLDREPGKTLVVGAG  196 (483)
T ss_dssp             TTHHHHCBCHHHHTTCSSCCCEEEEECCS
T ss_pred             CCcccccCcHHHHhhhhhcCCcEEEECCC
Confidence            9987666665  333 3456778887653

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=99.88  E-value=6.8e-22  Score=188.15  Aligned_cols=206  Identities=41%  Similarity=0.760  Sum_probs=153.5

Q ss_pred             ccCCccchhhhccCcceeeccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccC
Q psy7665          87 FLLPTLECQEVYHDGRFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVG  166 (296)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~  166 (296)
                      .+.++...........+.+.+...  ...+||+||||||+|++||.+|++.|++|+|+|+..+...|..|.+||+|.+.+
T Consensus        81 ~igG~~~l~~~~~~g~L~~~l~~~--~~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~g  158 (598)
T 2x8g_A           81 FIGDSQTVLKYYSNDELAGIVNES--KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVG  158 (598)
T ss_dssp             EEECHHHHHHHHHTTCHHHHHHCC--SSSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHHS
T ss_pred             EEEeeehhhhhhhcCcchhhcccc--cccccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEeccC
Confidence            344444333333333444444322  356899999999999999999999999999999322333455667999999999


Q ss_pred             CCchhHHHHhhhhHHHhhcccccCccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE
Q psy7665         167 CIPKKLFHRASLLNEEATTSDNFGFHMKK---SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF  243 (296)
Q Consensus       167 ~~p~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v  243 (296)
                      |+|++.+...............+|+....   ..+|..+.++++.+.+.+...+...++..+|+++.+...+.+.+.+.+
T Consensus       159 ~iP~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~v~v  238 (598)
T 2x8g_A          159 CIPKKLMHQAGLLSHALEDAEHFGWSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQI  238 (598)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCCCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEE
T ss_pred             CCchHHHHHHHHHHHHHhhHHhCCccccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEE
Confidence            99999988877766666666667765432   578899999998888887776667778889999988887778888877


Q ss_pred             ---cceeEEEEeCeEEEcCCCCCCCCCCCCCccceeec--ccC-CCCCCcEEEeecc
Q psy7665         244 ---AGEERTVSAQNFIIAVGGRPTYPDIPGARLLRTLS--LLS-GVDPPTLIFLEHI  294 (296)
Q Consensus       244 ---~g~~~~~~a~~vV~AtG~~p~~p~i~G~~~~~~~s--~~~-~~~~~~~~~~~~~  294 (296)
                         +|+...+.||+||+|||++|+.|++||.+++..++  ++. ...+++++||+++
T Consensus       239 ~~~~g~~~~~~~d~lviAtGs~p~~p~i~G~~~~~~~~~~~~~~~~~~~~vvViGgG  295 (598)
T 2x8g_A          239 TDKNQKVSTITGNKIILATGERPKYPEIPGAVEYGITSDDLFSLPYFPGKTLVIGAS  295 (598)
T ss_dssp             ECTTCCEEEEEEEEEEECCCEEECCCSSTTHHHHCEEHHHHTTCSSCCCSEEEECCS
T ss_pred             EeCCCCeEEEEeCEEEEeCCCCCCCCCCCCcccceEcHHHHhhCccCCCEEEEECCC
Confidence               34335789999999999999999999987666665  232 2456778888754

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=99.87  E-value=2.5e-21  Score=180.17  Aligned_cols=180  Identities=30%  Similarity=0.520  Sum_probs=141.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHh-CCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAAS-MNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFH  192 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~-~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~  192 (296)
                      ..+||+|||||++|+++|.+|++ .|++|+|||+..++...++..+||+|.+.+|+|++.+.+.............+++.
T Consensus         6 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~   85 (495)
T 2wpf_A            6 KAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGWE   85 (495)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred             cccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHhcCcc
Confidence            35899999999999999999999 99999999922222223333789999999999999999888777766666677775


Q ss_pred             ccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CcEEEcceEEEEeCCEEEEc--ce-----eEEEEeCeEEEcCCC
Q psy7665         193 MKK---SFTWKTLVDNVQKYIRNLNNNYEKELEKN-KIDYFNAKAVFVDKHRVKFA--GE-----ERTVSAQNFIIAVGG  261 (296)
Q Consensus       193 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~v~v~--g~-----~~~~~a~~vV~AtG~  261 (296)
                      ...   .++|..+..+.+.+.+.+...+...+++. +++++.+++.+.+.+.|.++  +.     ...+.||+||+|||+
T Consensus        86 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~~~~~~~~~~d~lViATGs  165 (495)
T 2wpf_A           86 FDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATGS  165 (495)
T ss_dssp             CCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCCE
T ss_pred             cCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeEEEEeeCCEEEEeecCCccCCCCeEEEcCEEEEeCCC
Confidence            432   46888999988888888877777888888 99999988877788888884  11     367999999999999


Q ss_pred             CCCCCCCCCCccceeec--ccC-CCCCCcEEEeecc
Q psy7665         262 RPTYPDIPGARLLRTLS--LLS-GVDPPTLIFLEHI  294 (296)
Q Consensus       262 ~p~~p~i~G~~~~~~~s--~~~-~~~~~~~~~~~~~  294 (296)
                      +|+.|++||.+ .+.++  ++. ...+++++|++.+
T Consensus       166 ~p~~p~i~G~~-~~~~~~~~~~~~~~~~~vvViGgG  200 (495)
T 2wpf_A          166 WPQMPAIPGIE-HCISSNEAFYLPEPPRRVLTVGGG  200 (495)
T ss_dssp             EECCCCCTTGG-GCEEHHHHTTCSSCCSEEEEECSS
T ss_pred             CcCCCCCCCcc-ccccHHHHHhhhhcCCeEEEECCC
Confidence            99999999984 34554  333 3356778887653

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=99.87  E-value=3.5e-21  Score=177.78  Aligned_cols=168  Identities=38%  Similarity=0.715  Sum_probs=137.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK  194 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~  194 (296)
                      .+||+|||||++|+.+|.+|++.|++|+|||  +.       .+||+|.+.+|+|++.++..............+++...
T Consensus         4 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE--~~-------~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~   74 (463)
T 2r9z_A            4 HFDLIAIGGGSGGLAVAEKAAAFGKRVALIE--SK-------ALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQAS   74 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEE--SS-------CTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCcEEEEc--CC-------CCCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccC
Confidence            5799999999999999999999999999999  32       67999999999999999888777776666677777654


Q ss_pred             c-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCCCCCCCCCCCcc
Q psy7665         195 K-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGARL  273 (296)
Q Consensus       195 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~p~~p~i~G~~~  273 (296)
                      . ..+|..+..+.+.+.+.+...+...+.+.+++++.++....+.+.|.+++  .++.+|+||+|||++|..|++||.+ 
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~~g--~~~~~d~lviAtGs~p~~p~i~G~~-  151 (463)
T 2r9z_A           75 GGTLDWPRLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDAHTIEVEG--QRLSADHIVIATGGRPIVPRLPGAE-  151 (463)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETT--EEEEEEEEEECCCEEECCCSCTTGG-
T ss_pred             CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEccCCEEEECC--EEEEcCEEEECCCCCCCCCCCCCcc-
Confidence            4 67899898888888888877777788888999998887777778888766  5799999999999999999999984 


Q ss_pred             ceeec--ccC-CCCCCcEEEeecc
Q psy7665         274 LRTLS--LLS-GVDPPTLIFLEHI  294 (296)
Q Consensus       274 ~~~~s--~~~-~~~~~~~~~~~~~  294 (296)
                      .+.++  ++. ...+++++|++.+
T Consensus       152 ~~~~~~~~~~~~~~~~~vvVvGgG  175 (463)
T 2r9z_A          152 LGITSDGFFALQQQPKRVAIIGAG  175 (463)
T ss_dssp             GSBCHHHHHHCSSCCSEEEEECCS
T ss_pred             ceecHHHHhhhhccCCEEEEECCC
Confidence            34444  222 3456778887653

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=99.86  E-value=4.8e-21  Score=177.46  Aligned_cols=179  Identities=26%  Similarity=0.377  Sum_probs=141.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhc-ccccCcc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATT-SDNFGFH  192 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~g~~  192 (296)
                      ..|||+|||||++|+++|.+|++.|++|+|||  +.+..|....+||+|.+.+|+|++.+............ +..+++.
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liE--k~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~   79 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIE--KYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGIS   79 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEE--CCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEE
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEe--CCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            35899999999999999999999999999999  66566777779999999999999988887766665543 5777776


Q ss_pred             ccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCCCCC
Q psy7665         193 MKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDI  268 (296)
Q Consensus       193 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~p~i  268 (296)
                      ... .++|..+..+.+.+.+.+...+...++..+++++.++..+.+.+.+.+   +++...+.+|+||+|||++|..|+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~~~  159 (476)
T 3lad_A           80 TGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEIPP  159 (476)
T ss_dssp             CSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCCTT
T ss_pred             cCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEcCCCceEEEEcCEEEEcCCCCCCCCCC
Confidence            654 788999988888888888777777788889999998887777777766   3444678999999999999987765


Q ss_pred             CCCc-cceeec--cc-CCCCCCcEEEeecc
Q psy7665         269 PGAR-LLRTLS--LL-SGVDPPTLIFLEHI  294 (296)
Q Consensus       269 ~G~~-~~~~~s--~~-~~~~~~~~~~~~~~  294 (296)
                      ++.+ ..++++  .+ ....+++++|++.+
T Consensus       160 ~~~~~~~v~~~~~~~~~~~~~~~v~ViGgG  189 (476)
T 3lad_A          160 APVDQDVIVDSTGALDFQNVPGKLGVIGAG  189 (476)
T ss_dssp             SCCCSSSEEEHHHHTSCSSCCSEEEEECCS
T ss_pred             CCCCcccEEechhhhccccCCCeEEEECCC
Confidence            5543 556665  22 23456778887653

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=99.86  E-value=3e-21  Score=179.55  Aligned_cols=170  Identities=26%  Similarity=0.428  Sum_probs=138.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..|||+||||||+|+++|.+|++.|++|+|||  +.       .+||+|.+++|+|++.+............+..+|++.
T Consensus         7 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liE--~~-------~~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~   77 (492)
T 3ic9_A            7 INVDVAIIGTGTAGMGAYRAAKKHTDKVVLIE--GG-------AYGTTCARVGCMPSKLLIAAADASYHASQTDLFGIQV   77 (492)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTCSCEEEEE--SS-------CSSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEEC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCcEEEEe--CC-------CCCCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCC
Confidence            35899999999999999999999999999999  32       6899999999999999999998888888888888875


Q ss_pred             cc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CcEEEcceEEEEeCCEEEE-cceeEEEEeCeEEEcCCCCCCCCCCCC
Q psy7665         194 KK-SFTWKTLVDNVQKYIRNLNNNYEKELEKN-KIDYFNAKAVFVDKHRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPG  270 (296)
Q Consensus       194 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~i~G  270 (296)
                      .. .+++..+..++....+.+...+...+... +++++.++..+.+.+.+.+ ++  ..+.+|+||+|||++|..|+++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~~~~v~~~~~--~~~~~d~lViATGs~p~~p~~~~  155 (492)
T 3ic9_A           78 DRISVNGKAVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLDEHTLQVDDH--SQVIAKRIVIATGSRPNYPEFLA  155 (492)
T ss_dssp             SEEEECHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEETTEEEETTT--EEEEEEEEEECCCEECCCCHHHH
T ss_pred             CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEecCCEEEEcCC--cEEEeCEEEEccCCCCcCCCCCC
Confidence            44 67898888888888777766666555554 6678888888888899998 66  68999999999999999998765


Q ss_pred             C-ccceeec--ccC-CCCCCcEEEeecc
Q psy7665         271 A-RLLRTLS--LLS-GVDPPTLIFLEHI  294 (296)
Q Consensus       271 ~-~~~~~~s--~~~-~~~~~~~~~~~~~  294 (296)
                      . ...++++  .+. ...+++++|++++
T Consensus       156 ~~~~~v~t~~~~~~~~~~~k~vvViGgG  183 (492)
T 3ic9_A          156 AAGSRLLTNDNLFELNDLPKSVAVFGPG  183 (492)
T ss_dssp             TTGGGEECHHHHTTCSSCCSEEEEESSC
T ss_pred             ccCCcEEcHHHHhhhhhcCCeEEEECCC
Confidence            3 3556665  233 3456778888654

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=99.86  E-value=3.8e-21  Score=176.91  Aligned_cols=168  Identities=38%  Similarity=0.709  Sum_probs=136.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhh-cccccCccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEAT-TSDNFGFHM  193 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~g~~~  193 (296)
                      .+||+|||||++|+++|.+|++.|++|+|||  +.       .+||+|.+.+|+|++.++.......... ....+++..
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE--~~-------~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~   74 (450)
T 1ges_A            4 HYDYIAIGGGSGGIASINRAAMYGQKCALIE--AK-------ELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDT   74 (450)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEE--SS-------CTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEc--CC-------CCCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccC
Confidence            5799999999999999999999999999999  33       6799999999999999988877766665 556677654


Q ss_pred             cc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCCCCCCCCCCCc
Q psy7665         194 KK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAR  272 (296)
Q Consensus       194 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~p~~p~i~G~~  272 (296)
                      .. .++|..+..+.+.+.+.+...+...+...+++++.++....+.+.+.+++  ..+.+|+||+|||++|..|++||.+
T Consensus        75 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~~~g--~~~~~d~lviAtGs~p~~p~i~g~~  152 (450)
T 1ges_A           75 TINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVNG--ETITADHILIATGGRPSHPDIPGVE  152 (450)
T ss_dssp             EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEETT--EEEEEEEEEECCCEEECCCCSTTGG
T ss_pred             CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEECC--EEEEeCEEEECCCCCCCCCCCCCcc
Confidence            43 67888888888888888877777788888999998877667777887766  6799999999999999999999984


Q ss_pred             cceeec--ccC-CCCCCcEEEeecc
Q psy7665         273 LLRTLS--LLS-GVDPPTLIFLEHI  294 (296)
Q Consensus       273 ~~~~~s--~~~-~~~~~~~~~~~~~  294 (296)
                       .+.++  ++. ...+++++|++++
T Consensus       153 -~~~~~~~~~~~~~~~~~vvViGgG  176 (450)
T 1ges_A          153 -YGIDSDGFFALPALPERVAVVGAG  176 (450)
T ss_dssp             -GSBCHHHHHHCSSCCSEEEEECCS
T ss_pred             -ceecHHHhhhhhhcCCeEEEECCC
Confidence             34444  222 3456778888654

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=99.86  E-value=5.4e-21  Score=177.22  Aligned_cols=169  Identities=33%  Similarity=0.667  Sum_probs=140.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..+||+|||||++|+.+|.+|++.|++|+|||  +.       .+||+|.+.+|+|++.++..............+++..
T Consensus        19 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE--~~-------~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~   89 (478)
T 3dk9_A           19 ASYDYLVIGGGSGGLASARRAAELGARAAVVE--SH-------KLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPS   89 (478)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEE--SS-------CTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEe--cC-------CCCCcccccCccchHHHHHHHHHHHHHHHHHhcCccC
Confidence            46899999999999999999999999999999  32       7899999999999999999888888888888888876


Q ss_pred             cc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCC--EEEEcceeEEEEeCeEEEcCCCCCCCC---C
Q psy7665         194 KK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKH--RVKFAGEERTVSAQNFIIAVGGRPTYP---D  267 (296)
Q Consensus       194 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~v~v~g~~~~~~a~~vV~AtG~~p~~p---~  267 (296)
                      .. .++|..+..+.+.+.+.+...+...++..+++++.++..+.+..  .+..++  .++.||+||+|||++|..|   +
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~g--~~~~~d~lviAtG~~p~~p~~~~  167 (478)
T 3dk9_A           90 CEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSG--KKYTAPHILIATGGMPSTPHESQ  167 (478)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEECSCSSCEEEETT--EEEECSCEEECCCEEECCCCTTT
T ss_pred             CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEeeCCeEEEEECC--EEEEeeEEEEccCCCCCCCCcCC
Confidence            55 78999999999998888888888888889999998887765543  455466  6799999999999999999   9


Q ss_pred             CCCCccceeec--ccC-CCCCCcEEEeecc
Q psy7665         268 IPGARLLRTLS--LLS-GVDPPTLIFLEHI  294 (296)
Q Consensus       268 i~G~~~~~~~s--~~~-~~~~~~~~~~~~~  294 (296)
                      +||.+ ...++  ++. ...+++++||+++
T Consensus       168 i~G~~-~~~~~~~~~~~~~~~~~vvViGgG  196 (478)
T 3dk9_A          168 IPGAS-LGITSDGFFQLEELPGRSVIVGAG  196 (478)
T ss_dssp             STTGG-GSBCHHHHTTCCSCCSEEEEECCS
T ss_pred             CCCCc-eeEchHHhhchhhcCccEEEECCC
Confidence            99986 34444  333 3456778887654

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=99.86  E-value=9.8e-21  Score=175.98  Aligned_cols=179  Identities=30%  Similarity=0.509  Sum_probs=140.2

Q ss_pred             cccEEEECCChHHHHHHHHHHh-CCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAAS-MNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~-~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      .|||+|||||++|+++|.+|++ .|++|+|||+......+++..+||+|.+.+|+|++.+.+.....+.......|++..
T Consensus         3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~   82 (490)
T 1fec_A            3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWEL   82 (490)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEC
T ss_pred             cccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCccc
Confidence            5799999999999999999999 999999999211111222337899999999999999998888777777777777754


Q ss_pred             cc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CcEEEcceEEEEeCCEEEEc-----ce--eEEEEeCeEEEcCCCC
Q psy7665         194 KK---SFTWKTLVDNVQKYIRNLNNNYEKELEKN-KIDYFNAKAVFVDKHRVKFA-----GE--ERTVSAQNFIIAVGGR  262 (296)
Q Consensus       194 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~v~v~-----g~--~~~~~a~~vV~AtG~~  262 (296)
                      ..   .++|..+..+.+...+.+...+...+++. +++++.+++...+.+.+.+.     ++  ...+.+|+||+|||++
T Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~g~~~~~~~~d~lviAtGs~  162 (490)
T 1fec_A           83 DRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSW  162 (490)
T ss_dssp             CGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCCEE
T ss_pred             CCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeEEEEeeCCEEEEEeeccCCCCceEEEEcCEEEEeCCCC
Confidence            32   46888888888888888877777888888 99999988877777888873     33  2679999999999999


Q ss_pred             CCCCCCCCCccceeec--ccC-CCCCCcEEEeecc
Q psy7665         263 PTYPDIPGARLLRTLS--LLS-GVDPPTLIFLEHI  294 (296)
Q Consensus       263 p~~p~i~G~~~~~~~s--~~~-~~~~~~~~~~~~~  294 (296)
                      |..|++||.+ .+.++  ++. ...+++++|++++
T Consensus       163 p~~p~i~g~~-~~~~~~~~~~~~~~~~~vvViGgG  196 (490)
T 1fec_A          163 PQHLGIEGDD-LCITSNEAFYLDEAPKRALCVGGG  196 (490)
T ss_dssp             ECCCCSBTGG-GCBCHHHHTTCSSCCSEEEEECSS
T ss_pred             CCCCCCCCcc-ceecHHHHhhhhhcCCeEEEECCC
Confidence            9999999984 34444  233 3356778887653

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=99.86  E-value=5.3e-21  Score=176.61  Aligned_cols=169  Identities=36%  Similarity=0.651  Sum_probs=141.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..|||+|||||++|+++|++|+++|++|+|||  + +      .+||+|.+.+|+|++.+...............+++..
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~G~~V~liE--k-~------~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~   74 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAALGKKVAIAE--E-F------RYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTV   74 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEEE--S-S------CTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEE
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCEEEEEe--C-C------CCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCccc
Confidence            35899999999999999999999999999999  4 4      7999999999999999999888888888888888875


Q ss_pred             cc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE--cceeEEEEeCeEEEcCCCCCC-CCCCC
Q psy7665         194 KK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF--AGEERTVSAQNFIIAVGGRPT-YPDIP  269 (296)
Q Consensus       194 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v--~g~~~~~~a~~vV~AtG~~p~-~p~i~  269 (296)
                      .. .++|..+..+.......+...+...+++.+++++.++..+.+.+.+.+  ++  ..+.+|++|+|||++|. .|++|
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~~~~~--~~~~~d~lviAtG~~p~~~p~i~  152 (463)
T 4dna_A           75 GESRFDWAKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLLASG--KTVTAERIVIAVGGHPSPHDALP  152 (463)
T ss_dssp             CCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTT--EEEEEEEEEECCCEEECCCTTST
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEecCC--eEEEeCEEEEecCCCcccCCCCC
Confidence            54 788999998888888888777778888889999998887777888888  45  68999999999999999 99999


Q ss_pred             CCccceeec--ccC-CCCCCcEEEeecc
Q psy7665         270 GARLLRTLS--LLS-GVDPPTLIFLEHI  294 (296)
Q Consensus       270 G~~~~~~~s--~~~-~~~~~~~~~~~~~  294 (296)
                      |.+. +.++  ++. ...++++++++.+
T Consensus       153 G~~~-~~~~~~~~~~~~~~~~v~ViGgG  179 (463)
T 4dna_A          153 GHEL-CITSNEAFDLPALPESILIAGGG  179 (463)
T ss_dssp             TGGG-CBCHHHHTTCSSCCSEEEEECCS
T ss_pred             Cccc-cccHHHHhhhhcCCCeEEEECCC
Confidence            9853 4444  333 3446677777643

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.85  E-value=1e-20  Score=175.68  Aligned_cols=167  Identities=35%  Similarity=0.662  Sum_probs=139.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK  194 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~  194 (296)
                      .|||+|||||++|+++|++|+++|++|+|||  + +      .+||+|.+.+|+|++.+...............+++...
T Consensus        26 ~~DVvVIGgG~aGl~aA~~la~~G~~V~liE--k-~------~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~   96 (484)
T 3o0h_A           26 DFDLFVIGSGSGGVRAARLAGALGKRVAIAE--E-Y------RIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYA   96 (484)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEEE--S-S------CTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCcCEEEEEe--C-C------CCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccC
Confidence            5899999999999999999999999999999  4 4      78999999999999999998888888888888888765


Q ss_pred             c-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE--cceeEEEEeCeEEEcCCCCCC-CCCCCC
Q psy7665         195 K-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF--AGEERTVSAQNFIIAVGGRPT-YPDIPG  270 (296)
Q Consensus       195 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v--~g~~~~~~a~~vV~AtG~~p~-~p~i~G  270 (296)
                      . .+++..+..+.......+...+...++..+++++.+...+.+.+.+.+  ++  ..+.+|++|+|||++|. .|++||
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~v~~~~--~~~~~d~lviAtG~~p~~~p~i~G  174 (484)
T 3o0h_A           97 DPIFNWEKLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDEHTLELSVTG--ERISAEKILIATGAKIVSNSAIKG  174 (484)
T ss_dssp             CCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTTC--CEEEEEEEEECCCEEECCC--CBT
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEecCC--eEEEeCEEEEccCCCcccCCCCCC
Confidence            5 788999988888888888888888888899999998888888888888  44  67999999999999999 899999


Q ss_pred             Cccceeec--ccC-CCCCCcEEEeec
Q psy7665         271 ARLLRTLS--LLS-GVDPPTLIFLEH  293 (296)
Q Consensus       271 ~~~~~~~s--~~~-~~~~~~~~~~~~  293 (296)
                      .+ .+.++  ++. ...++++++++.
T Consensus       175 ~~-~~~~~~~~~~~~~~~~~v~ViGg  199 (484)
T 3o0h_A          175 SD-LCLTSNEIFDLEKLPKSIVIVGG  199 (484)
T ss_dssp             GG-GSBCTTTGGGCSSCCSEEEEECC
T ss_pred             cc-ccccHHHHHhHHhcCCcEEEECc
Confidence            85 34444  232 345677777764

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.85  E-value=6.7e-21  Score=177.53  Aligned_cols=170  Identities=39%  Similarity=0.682  Sum_probs=126.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK  194 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~  194 (296)
                      .+||+|||||++|+++|.+|++.|++|+|||  +.       .+||+|.+.+|+|++.+...............+++...
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE--~~-------~~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~   72 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVE--KS-------RLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTK   72 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEE--SS-------STTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEe--CC-------CcCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccC
Confidence            4799999999999999999999999999999  33       57999999999999988887777777766777777654


Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE-c-----------ceeEEEEeCeEEEcCCCC
Q psy7665         195 KSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF-A-----------GEERTVSAQNFIIAVGGR  262 (296)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v-~-----------g~~~~~~a~~vV~AtG~~  262 (296)
                      ..++|+.+..+.+.+.+.+...+...+++.+++++.++....+.+.+.+ +           +...++.||+||+|||++
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~id~~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~  152 (500)
T 1onf_A           73 FSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNK  152 (500)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCC
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeccccccccccCCCceEEEeCEEEECCCCC
Confidence            4678888888877777777777777778889999887654444455655 3           112568999999999999


Q ss_pred             CCCCCCCCCccceeec--ccCCCCCCcEEEeecc
Q psy7665         263 PTYPDIPGARLLRTLS--LLSGVDPPTLIFLEHI  294 (296)
Q Consensus       263 p~~p~i~G~~~~~~~s--~~~~~~~~~~~~~~~~  294 (296)
                      |..|++||.+ .+.++  ++..+.+++++|++++
T Consensus       153 p~~p~i~G~~-~~~~~~~~~~~~~~~~vvViGgG  185 (500)
T 1onf_A          153 PVFPPVKGIE-NTISSDEFFNIKESKKIGIVGSG  185 (500)
T ss_dssp             BCCCSCTTGG-GCEEHHHHTTCCCCSEEEEECCS
T ss_pred             CCCCCCCCCC-cccCHHHHhccCCCCeEEEECCh
Confidence            9999999984 34554  3444447788888654

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=99.85  E-value=2.2e-20  Score=173.64  Aligned_cols=171  Identities=31%  Similarity=0.492  Sum_probs=136.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhc-ccccCcc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATT-SDNFGFH  192 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~g~~  192 (296)
                      +.+||+|||||++|+++|.+|++.|++|+|||  +.+      .+||+|.+.+|+|++.+............ +..+++.
T Consensus        24 ~~~dVvVIGgG~aGl~aA~~la~~G~~V~liE--k~~------~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~   95 (491)
T 3urh_A           24 MAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVE--KRS------TYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVE   95 (491)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEE--SSS------SSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEE
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEe--cCC------CCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcc
Confidence            46899999999999999999999999999999  666      89999999999999998887776665554 5777776


Q ss_pred             ccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCCCCC
Q psy7665         193 MKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDI  268 (296)
Q Consensus       193 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~p~i  268 (296)
                      ... .++|..+..+.+...+.+...+...++..+++++.+...+.+.+.+.+   +|+...+.+|+||+|||++|  |.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p--~~i  173 (491)
T 3urh_A           96 VANPKLNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDV--AGI  173 (491)
T ss_dssp             CCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECSSSEEEEECTTSCEEEEECSEEEECCCEEC--CCB
T ss_pred             cCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEccCCCC--CCC
Confidence            654 778999988888888888777788888899999999888877777777   34446899999999999876  456


Q ss_pred             CCCc-----cceeec---ccCCCCCCcEEEeecc
Q psy7665         269 PGAR-----LLRTLS---LLSGVDPPTLIFLEHI  294 (296)
Q Consensus       269 ~G~~-----~~~~~s---~~~~~~~~~~~~~~~~  294 (296)
                      ||.+     ..+.++   ......+++++|++++
T Consensus       174 pg~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG  207 (491)
T 3urh_A          174 PGVEVAFDEKTIVSSTGALALEKVPASMIVVGGG  207 (491)
T ss_dssp             TTBCCCCCSSSEECHHHHTSCSSCCSEEEEECCS
T ss_pred             CCcccccCCeeEEehhHhhhhhhcCCeEEEECCC
Confidence            7654     234444   2234457778888654

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=99.85  E-value=2.1e-20  Score=173.11  Aligned_cols=173  Identities=26%  Similarity=0.348  Sum_probs=135.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhh--cccccCc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEAT--TSDNFGF  191 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~--~~~~~g~  191 (296)
                      ..+||+|||||++|+.+|.+|++.|++|+|||  +.+      .+||+|.+.+|+|++.+...........  .+..+|+
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE--~~~------~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~   76 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIE--KNE------TLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGI   76 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEE--CSS------SSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEe--CCC------CcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCcc
Confidence            46899999999999999999999999999999  666      7899999999999998887766655554  5555666


Q ss_pred             cccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE--cc-eeEEEEeCeEEEcCCCCCCCCC
Q psy7665         192 HMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF--AG-EERTVSAQNFIIAVGGRPTYPD  267 (296)
Q Consensus       192 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v--~g-~~~~~~a~~vV~AtG~~p~~p~  267 (296)
                      +... ..++..+..+.+.+.+.+...+...+++.+++++.++....+.+.+.+  .+ +..++.||+||+|||++|..|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~p~  156 (474)
T 1zmd_A           77 EMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFP  156 (474)
T ss_dssp             EESCEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCT
T ss_pred             ccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEecCCCcEEEEeCEEEECCCCCCCCCC
Confidence            5433 568888888887777777777777788889999988877667777766  22 3357999999999999999999


Q ss_pred             CCCCcc-ceeec--ccCC-CCCCcEEEeecc
Q psy7665         268 IPGARL-LRTLS--LLSG-VDPPTLIFLEHI  294 (296)
Q Consensus       268 i~G~~~-~~~~s--~~~~-~~~~~~~~~~~~  294 (296)
                      +||.+. .+.++  .+.. ..+++++|++++
T Consensus       157 i~g~~~~~v~t~~~~~~~~~~~~~vvViGgG  187 (474)
T 1zmd_A          157 GITIDEDTIVSSTGALSLKKVPEKMVVIGAG  187 (474)
T ss_dssp             TCCCCSSSEECHHHHTTCSSCCSEEEEECCS
T ss_pred             CCCCCcCcEEcHHHHhhccccCceEEEECCC
Confidence            999764 35555  2332 346778887654

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.85  E-value=3e-20  Score=171.30  Aligned_cols=169  Identities=23%  Similarity=0.362  Sum_probs=135.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccc---cC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDN---FG  190 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~---~g  190 (296)
                      ..+||+|||||++|+++|.+|++.|++|+|+|  + +      .+||+|.+.+|+|++.+...............   +|
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie--~-~------~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g   74 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVE--G-Q------ALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLG   74 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEEC--S-S------CTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEc--c-C------CCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccC
Confidence            46899999999999999999999999999999  5 4      78999999999999988877766666555555   67


Q ss_pred             ccccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCCCCCCC-C
Q psy7665         191 FHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD-I  268 (296)
Q Consensus       191 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~p~~p~-i  268 (296)
                      ++... .+++..+..+.+...+.+...+...+++.+++++.++..+.+.+.+.+++  ..+.||+||+|||++|+.|+ +
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~--~~~~~d~lviATGs~p~~~~~~  152 (458)
T 1lvl_A           75 ISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDG--QRIQCEHLLLATGSSSVELPML  152 (458)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEETT--EEEECSEEEECCCEEECCBTTB
T ss_pred             cccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEccCCEEEEee--EEEEeCEEEEeCCCCCCCCCCC
Confidence            76544 77899998888888777777777778889999999887777778888866  67999999999999998776 6


Q ss_pred             CCCccceeec--ccCC-CCCCcEEEeecc
Q psy7665         269 PGARLLRTLS--LLSG-VDPPTLIFLEHI  294 (296)
Q Consensus       269 ~G~~~~~~~s--~~~~-~~~~~~~~~~~~  294 (296)
                      |. +..+.++  .+.. ..+++++|++++
T Consensus       153 ~~-~~~v~~~~~~~~~~~~~~~vvViGgG  180 (458)
T 1lvl_A          153 PL-GGPVISSTEALAPKALPQHLVVVGGG  180 (458)
T ss_dssp             CC-BTTEECHHHHTCCSSCCSEEEEECCS
T ss_pred             Cc-cCcEecHHHHhhhhccCCeEEEECcC
Confidence            63 3345554  2332 346778888654

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=99.84  E-value=2.2e-20  Score=173.16  Aligned_cols=171  Identities=36%  Similarity=0.644  Sum_probs=136.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..+||+|||||++|+++|.+|++.|++|+|||  +.       .+||+|.+.+|+|++.+...............+++..
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE--~~-------~~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~   80 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVE--AK-------ALGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQ   80 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEE--SS-------CTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBST
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEe--CC-------CcCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCccc
Confidence            45899999999999999999999999999999  32       6899999999999999888777777666666777764


Q ss_pred             -------cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCC
Q psy7665         194 -------KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRP  263 (296)
Q Consensus       194 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p  263 (296)
                             ...++|..+..+.+.+.+.+...+...++..+++++.++....+.+.+.+   +++...+.+|+||+|||++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p  160 (479)
T 2hqm_A           81 NLPLDKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKA  160 (479)
T ss_dssp             TSCCSGGGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECTTSCEEEEESSSCCEEEEEEEEEECCCEEE
T ss_pred             ccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCCC
Confidence                   23678888888888888888777777888889999888776666666665   44334789999999999999


Q ss_pred             CCC-CCCCCccceeec--ccC-CCCCCcEEEeecc
Q psy7665         264 TYP-DIPGARLLRTLS--LLS-GVDPPTLIFLEHI  294 (296)
Q Consensus       264 ~~p-~i~G~~~~~~~s--~~~-~~~~~~~~~~~~~  294 (296)
                      ..| ++||.+ .+.++  ++. ...+++++|++++
T Consensus       161 ~~p~~i~g~~-~~~~~~~~~~l~~~~~~vvViGgG  194 (479)
T 2hqm_A          161 IFPENIPGFE-LGTDSDGFFRLEEQPKKVVVVGAG  194 (479)
T ss_dssp             CCCTTSTTGG-GSBCHHHHHHCSSCCSEEEEECSS
T ss_pred             CCCCCCCCcc-cccchHHHhcccccCCeEEEECCC
Confidence            999 899984 34443  233 3456778887654

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=99.84  E-value=2.5e-20  Score=172.26  Aligned_cols=166  Identities=23%  Similarity=0.367  Sum_probs=130.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK  194 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~  194 (296)
                      .|||+|||||++|+.+|.+|++.|++|+|||  +.+      .+||+|.+.+|+|++.+................    .
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liE--k~~------~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~----~   71 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMAD--PKG------ELGGNCLYSGCVPSKTVREVIQTAWRLTNIANV----K   71 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEC--TTS------SSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCS----C
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCeEEEEE--CCC------CCCCcccccCCCchHHHHHHHHHHHHHHhcccC----C
Confidence            5899999999999999999999999999999  666      899999999999999988877766665554431    1


Q ss_pred             ccCCHHHHHHHHHHHHHHHH--HHHHHHHHHCCcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCCCCCC
Q psy7665         195 KSFTWKTLVDNVQKYIRNLN--NNYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIP  269 (296)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~p~i~  269 (296)
                      ..+++..+..+.+...+ +.  ..+...+++.+++++.+++...+...+.+   +++..++.+|+||+|||++|+.|++|
T Consensus        72 ~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~~p~i~  150 (466)
T 3l8k_A           72 IPLDFSTVQDRKDYVQE-LRFKQHKRNMSQYETLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAKLRLP  150 (466)
T ss_dssp             CCCCHHHHHHHHHHHHH-HHHHHHHHHHTTCTTEEEESEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCCCCT
T ss_pred             CCcCHHHHHHHHHhhee-ccccchHHHHHHhCCCEEEEeEEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCccCCCCC
Confidence            26688888888777776 66  66667777789999998877777777666   44233499999999999999999999


Q ss_pred             CCccceeec--cc----C-CCCCCcEEEeecc
Q psy7665         270 GARLLRTLS--LL----S-GVDPPTLIFLEHI  294 (296)
Q Consensus       270 G~~~~~~~s--~~----~-~~~~~~~~~~~~~  294 (296)
                      |.+ .+.++  ++    . ...++++++++++
T Consensus       151 G~~-~~~t~~~~~~~~~~l~~~~~~vvViGgG  181 (466)
T 3l8k_A          151 GVE-YCLTSDDIFGYKTSFRKLPQDMVIIGAG  181 (466)
T ss_dssp             TGG-GSBCHHHHHSTTCSCCSCCSEEEEECCS
T ss_pred             Ccc-ceEeHHHHHHHHHHHhhCCCeEEEECCC
Confidence            987 44444  23    2 3346778887654

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=99.84  E-value=3.6e-20  Score=171.28  Aligned_cols=172  Identities=28%  Similarity=0.488  Sum_probs=132.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhc-ccccCccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATT-SDNFGFHM  193 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~g~~~  193 (296)
                      .+||+|||||++|+++|.+|++.|++|+|||  +.+      .+||+|.+.+|+|++.+.......+.... ...+|++.
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie--~~~------~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~   73 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVE--KRG------ALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMG   73 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEE--SSS------SSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEe--CCC------CcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            4799999999999999999999999999999  666      78999999999999988776665555543 45566653


Q ss_pred             -cc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCCCCC
Q psy7665         194 -KK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDI  268 (296)
Q Consensus       194 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~p~i  268 (296)
                       .. .+++..+..+.+...+.+...+...+++.+++++.++....+.+.+++   +|+...+.+|+||+|||++|..|++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~p~~  153 (468)
T 2qae_A           74 GEGVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTELPF  153 (468)
T ss_dssp             GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCBTT
T ss_pred             CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEecCCceEEEEcCEEEECCCCCcCCCCC
Confidence             22 567888887777777777666677777789999988877777777766   3433679999999999999999999


Q ss_pred             CCCcc-ceeec--ccC-CCCCCcEEEeecc
Q psy7665         269 PGARL-LRTLS--LLS-GVDPPTLIFLEHI  294 (296)
Q Consensus       269 ~G~~~-~~~~s--~~~-~~~~~~~~~~~~~  294 (296)
                      +|.+. .+.++  .+. ...+++++|++.+
T Consensus       154 ~g~~~~~v~t~~~~~~~~~~~~~vvViGgG  183 (468)
T 2qae_A          154 LPFDEKVVLSSTGALALPRVPKTMVVIGGG  183 (468)
T ss_dssp             BCCCSSSEECHHHHHTCSSCCSEEEEECCS
T ss_pred             CCCCcCceechHHHhhcccCCceEEEECCC
Confidence            98763 45554  222 2356778887654

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.84  E-value=7.9e-20  Score=168.37  Aligned_cols=172  Identities=29%  Similarity=0.425  Sum_probs=134.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..+||+|||||++|+.+|.+|++.|++|+|+|  +.       .+||+|.+.+|+|++.+...........+...+++..
T Consensus         2 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie--~~-------~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~   72 (455)
T 1ebd_A            2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVE--KG-------NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKA   72 (455)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEE--SS-------CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEEC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEE--CC-------CCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCccc
Confidence            35799999999999999999999999999999  32       6799999999999998887777777777777777765


Q ss_pred             cc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE--cceeEEEEeCeEEEcCCCCCCCCCCCC
Q psy7665         194 KK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF--AGEERTVSAQNFIIAVGGRPTYPDIPG  270 (296)
Q Consensus       194 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v--~g~~~~~~a~~vV~AtG~~p~~p~i~G  270 (296)
                      .. ..++..+..+.+...+.+...+...+++.+++++.++....+.+.+.+  .++..++.||+||+|||++|..|+++|
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~i~~d~lViATGs~p~~~~~~g  152 (455)
T 1ebd_A           73 ENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELPNFK  152 (455)
T ss_dssp             CSCEECHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCEEECCBTTBC
T ss_pred             CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCcEEEEeCEEEEecCCCCCCCCCCC
Confidence            43 567887777776666666666777788889999988876666676666  222257899999999999999999998


Q ss_pred             Cccceeec--ccCC-CCCCcEEEeecc
Q psy7665         271 ARLLRTLS--LLSG-VDPPTLIFLEHI  294 (296)
Q Consensus       271 ~~~~~~~s--~~~~-~~~~~~~~~~~~  294 (296)
                      .+..+.++  .+.. ..+++++|++++
T Consensus       153 ~~~~v~~~~~~~~~~~~~~~vvViGgG  179 (455)
T 1ebd_A          153 FSNRILDSTGALNLGEVPKSLVVIGGG  179 (455)
T ss_dssp             CCSSEECHHHHHTCSSCCSEEEEECCS
T ss_pred             ccceEecHHHHhccccCCCeEEEECCC
Confidence            76545554  2332 356778888754

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=99.83  E-value=3.8e-20  Score=170.52  Aligned_cols=168  Identities=31%  Similarity=0.438  Sum_probs=132.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKK  195 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~  195 (296)
                      |||+|||||++|+++|.+|++.|++|+|+|  +.+      .+||+|.+.+|+|++.+.......+.... ..++++...
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie--~~~------~~GG~~~~~g~~p~k~l~~~~~~~~~~~~-~~~g~~~~~   72 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVE--KEK------ALGGTCLRVGCIPSKALLETTERIYEAKK-GLLGAKVKG   72 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEE--SSS------SSSHHHHHHSHHHHHHHHHHHHHHHHHHH-CCTTEEECC
T ss_pred             CCEEEECCChhHHHHHHHHHHCCCeEEEEe--CCC------CCCCccceecchhHHHHHHHHHHHHHHhh-hcCCcccCC
Confidence            799999999999999999999999999999  666      78999999999999988877766665554 566765443


Q ss_pred             -cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEc--ceeEEEEeCeEEEcCCCCCCCCCCCCCc
Q psy7665         196 -SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFA--GEERTVSAQNFIIAVGGRPTYPDIPGAR  272 (296)
Q Consensus       196 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~--g~~~~~~a~~vV~AtG~~p~~p~i~G~~  272 (296)
                       ..++..+..+.+.+.+.+...+...+++.+++++.++..+.+.+.+.+.  +  ..+.||+||+|||++|..|+++|.+
T Consensus        73 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~g--~~~~~d~lviAtG~~p~~~~~~g~~  150 (455)
T 2yqu_A           73 VELDLPALMAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSERKVLVEETG--EELEARYILIATGSAPLIPPWAQVD  150 (455)
T ss_dssp             EEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTC--CEEEEEEEEECCCEEECCCTTBCCC
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEeeCC--EEEEecEEEECCCCCCCCCCCCCCC
Confidence             6788888877777777766666677777899999888776677778773  4  5789999999999999999998876


Q ss_pred             c-ceeec--ccCC-CCCCcEEEeecc
Q psy7665         273 L-LRTLS--LLSG-VDPPTLIFLEHI  294 (296)
Q Consensus       273 ~-~~~~s--~~~~-~~~~~~~~~~~~  294 (296)
                      . .+.++  .+.. ..+++++|++++
T Consensus       151 ~~~v~~~~~~~~~~~~~~~vvIiGgG  176 (455)
T 2yqu_A          151 YERVVTSTEALSFPEVPKRLIVVGGG  176 (455)
T ss_dssp             SSSEECHHHHTCCSSCCSEEEEECCS
T ss_pred             cCcEechHHhhccccCCCeEEEECCC
Confidence            4 45554  2332 346778887654

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=99.83  E-value=6.6e-20  Score=169.28  Aligned_cols=168  Identities=29%  Similarity=0.408  Sum_probs=133.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK  194 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~  194 (296)
                      .+||+|||||++|+.+|.+|++.|++|+|||  +.       .+||+|.+.+|+|++.+.......+.......+|++..
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie--~~-------~~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~   76 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVE--AG-------EVGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAK   76 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEE--SS-------CTTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEe--CC-------CCCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCC
Confidence            5799999999999999999999999999999  33       58999999999999988877776666666666777622


Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCCCCCCC-CCCCcc
Q psy7665         195 KSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD-IPGARL  273 (296)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~p~~p~-i~G~~~  273 (296)
                      ..+++..+..+.+...+.+...+...+++.+++++.++..+.+.+.+.+++  .++.||+||+|||++|..|+ +||. .
T Consensus        77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~g--~~~~~d~lViATGs~p~~p~gi~~~-~  153 (464)
T 2eq6_A           77 PELDLKKLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVGPKEVEVGG--ERYGAKSLILATGSEPLELKGFPFG-E  153 (464)
T ss_dssp             CEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETT--EEEEEEEEEECCCEEECCBTTBCCS-S
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEccCCEEEEcc--EEEEeCEEEEcCCCCCCCCCCCCCC-C
Confidence            267888888877777777766666777888999998887777778887775  57999999999999999886 8874 3


Q ss_pred             ceeec--ccCCC--CCCcEEEeecc
Q psy7665         274 LRTLS--LLSGV--DPPTLIFLEHI  294 (296)
Q Consensus       274 ~~~~s--~~~~~--~~~~~~~~~~~  294 (296)
                      .++++  .+..+  .|++++|++++
T Consensus       154 ~v~~~~~~~~l~~~~~~~vvViGgG  178 (464)
T 2eq6_A          154 DVWDSTRALKVEEGLPKRLLVIGGG  178 (464)
T ss_dssp             SEECHHHHTCGGGCCCSEEEEECCS
T ss_pred             cEEcHHHHHhhhhhcCCEEEEECCC
Confidence            45554  23332  57788888754

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.83  E-value=8.2e-20  Score=168.89  Aligned_cols=173  Identities=29%  Similarity=0.429  Sum_probs=131.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhc-ccccCcc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATT-SDNFGFH  192 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~g~~  192 (296)
                      ..+||+|||||++|+.+|.+|++.|++|+|||  +.+      .+||+|.+.+|+|++.+.......+.... ...++++
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE--~~~------~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~   76 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIE--KRG------ALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVK   76 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEE--CSS------SSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEE
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEe--CCC------CccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcc
Confidence            45799999999999999999999999999999  666      78999999999999887776655555443 4455665


Q ss_pred             ccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCCCCC
Q psy7665         193 MKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDI  268 (296)
Q Consensus       193 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~p~i  268 (296)
                      ... ..++..+..+.+...+.+...+...+++.+++++.++....+.+.+.+   +|+...+.+|+||+|||++|..|++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p~~  156 (470)
T 1dxl_A           77 VSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPG  156 (470)
T ss_dssp             ESCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEECCBTT
T ss_pred             cCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEeCCCceEEEEcCEEEECCCCCCCCCCC
Confidence            433 567777777766666666666667777779999988776667777777   2333679999999999999999999


Q ss_pred             CCCcc-ceeec--ccCC-CCCCcEEEeecc
Q psy7665         269 PGARL-LRTLS--LLSG-VDPPTLIFLEHI  294 (296)
Q Consensus       269 ~G~~~-~~~~s--~~~~-~~~~~~~~~~~~  294 (296)
                      +|.+. .+.++  .+.. ..+++++|++++
T Consensus       157 ~g~~~~~v~~~~~~~~~~~~~~~vvViGgG  186 (470)
T 1dxl_A          157 VTIDEKKIVSSTGALALSEIPKKLVVIGAG  186 (470)
T ss_dssp             BCCCSSSEECHHHHTTCSSCCSEEEESCCS
T ss_pred             CCCCcccEEeHHHhhhhhhcCCeEEEECCC
Confidence            98764 45554  2332 346778887654

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=99.83  E-value=1.2e-19  Score=167.69  Aligned_cols=171  Identities=29%  Similarity=0.460  Sum_probs=127.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhccccc-Cccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNF-GFHM  193 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-g~~~  193 (296)
                      .+||+|||||++|+++|.+|++.|++|+|||  +.       .+||+|.+.+|+|++.+..............++ |++.
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie--~~-------~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~   74 (467)
T 1zk7_A            4 PVQVAVIGSGGAAMAAALKAVEQGAQVTLIE--RG-------TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAA   74 (467)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEE--SS-------STTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEe--CC-------CCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccC
Confidence            4799999999999999999999999999999  33       679999999999999888877666655555555 5543


Q ss_pred             cc-cCCHHHHHHHHHHHHHHHHH-HHHHHHHHC-CcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCCCC
Q psy7665         194 KK-SFTWKTLVDNVQKYIRNLNN-NYEKELEKN-KIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPD  267 (296)
Q Consensus       194 ~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~p~  267 (296)
                      .. ..++..+..+.+...+.+.. .+...+++. +++++.+++...+.+.+++   +|+...+.+|+||+|||++|+.|+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~  154 (467)
T 1zk7_A           75 TVPTIDRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPP  154 (467)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEEETTEEEEEETTSSEEEEECSEEEECCCEEECCCC
T ss_pred             CCCccCHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCCCCCCC
Confidence            32 56777777666555554432 234556667 9999888777777777766   343467999999999999999999


Q ss_pred             CCCCccc-eeec--ccC-CCCCCcEEEeecc
Q psy7665         268 IPGARLL-RTLS--LLS-GVDPPTLIFLEHI  294 (296)
Q Consensus       268 i~G~~~~-~~~s--~~~-~~~~~~~~~~~~~  294 (296)
                      +||.+.. ++++  .+. ...+++++||+++
T Consensus       155 i~G~~~~~~~~~~~~~~~~~~~~~vvViGgG  185 (467)
T 1zk7_A          155 IPGLKESPYWTSTEALASDTIPERLAVIGSS  185 (467)
T ss_dssp             CTTTTTSCCBCHHHHHHCSSCCSEEEEECCS
T ss_pred             CCCCCcCceecHHHHhcccccCCEEEEECCC
Confidence            9998642 4443  222 3346778887653

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=99.82  E-value=5e-19  Score=164.19  Aligned_cols=172  Identities=31%  Similarity=0.448  Sum_probs=133.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..+||+|||||++|+.+|.+|++.|++|+|+|  +.+      .+||+|.+.+|+|++.+.........+.+...++++.
T Consensus         5 ~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE--~~~------~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~   76 (482)
T 1ojt_A            5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVE--RYK------TLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKY   76 (482)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEE--SSS------CSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEe--CCC------CCCCceeeecccchHHHHHHHHHHHHHHHHHhCCccc
Confidence            35899999999999999999999999999999  655      7899999999999998887777777776677777765


Q ss_pred             cc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE---cc----------eeEEEEeCeEEEcC
Q psy7665         194 KK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF---AG----------EERTVSAQNFIIAV  259 (296)
Q Consensus       194 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v---~g----------~~~~~~a~~vV~At  259 (296)
                      .. .+++..+..+.....+.+...+...+++.+++++.++....+.+.+.+   ++          +..++.||+||+||
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAt  156 (482)
T 1ojt_A           77 PEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAA  156 (482)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECC
T ss_pred             CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEEccCCEEEEEecCCcccccccccCcceEEEcCEEEECC
Confidence            44 678888888777777777666777778889999988776666666666   22          12568999999999


Q ss_pred             CCCCCCCC-CCCCccceeec--ccCC-CCCCcEEEeecc
Q psy7665         260 GGRPTYPD-IPGARLLRTLS--LLSG-VDPPTLIFLEHI  294 (296)
Q Consensus       260 G~~p~~p~-i~G~~~~~~~s--~~~~-~~~~~~~~~~~~  294 (296)
                      |++|..|+ +|. +..+.++  .+.. ..+++++|++++
T Consensus       157 Gs~p~~~~~i~~-~~~v~~~~~~~~~~~~~~~vvViGgG  194 (482)
T 1ojt_A          157 GSRVTKLPFIPE-DPRIIDSSGALALKEVPGKLLIIGGG  194 (482)
T ss_dssp             CEEECCCSSCCC-CTTEECHHHHTTCCCCCSEEEEESCS
T ss_pred             CCCCCCCCCCCc-cCcEEcHHHHhcccccCCeEEEECCC
Confidence            99998887 673 3345554  2333 346778888654

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=99.81  E-value=4.4e-19  Score=165.23  Aligned_cols=171  Identities=22%  Similarity=0.357  Sum_probs=132.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhC---CCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASM---NKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGF  191 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~---G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~  191 (296)
                      .+||+|||||++|+++|++|++.   |++|+|||  +.       .+||+|.+.+|+|++.+............+..+++
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE--~~-------~~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~   72 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVID--CD-------GIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGF   72 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEE--SS-------CTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTB
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEe--CC-------CcCCcccCcCccchHHHHHHHHHHHHHHHHHhCCC
Confidence            47999999999999999999999   99999999  33       57999999999999988888777777776777777


Q ss_pred             c--ccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeC------CEEEE---cceeEEEEeCeEEEcC
Q psy7665         192 H--MKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDK------HRVKF---AGEERTVSAQNFIIAV  259 (296)
Q Consensus       192 ~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------~~v~v---~g~~~~~~a~~vV~At  259 (296)
                      +  ... .+++..+..+.+...+.+...+...+++.+++++.++....+.      +.+.+   +++...+.+|++|+||
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviAT  152 (499)
T 1xdi_A           73 HIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVAT  152 (499)
T ss_dssp             C------CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECC
T ss_pred             ccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcC
Confidence            5  222 5788888888777777777777777888899999887766555      56666   3422479999999999


Q ss_pred             CCCCCCCCCCCCcc-ceeec--ccC-CCCCCcEEEeecc
Q psy7665         260 GGRPTYPDIPGARL-LRTLS--LLS-GVDPPTLIFLEHI  294 (296)
Q Consensus       260 G~~p~~p~i~G~~~-~~~~s--~~~-~~~~~~~~~~~~~  294 (296)
                      |++|..|++||.+. .+.++  .+. ...+++++|++.+
T Consensus       153 Gs~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~vvViGgG  191 (499)
T 1xdi_A          153 GASPRILPSAQPDGERILTWRQLYDLDALPDHLIVVGSG  191 (499)
T ss_dssp             CEEECCCGGGCCCSSSEEEGGGGGGCSSCCSSEEEESCS
T ss_pred             CCCCCCCCCCCCCcCcEEehhHhhhhhccCCeEEEECCC
Confidence            99999999999763 35554  222 2346778887653

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=99.81  E-value=5.1e-19  Score=163.35  Aligned_cols=171  Identities=26%  Similarity=0.366  Sum_probs=129.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhh-cccccCccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEAT-TSDNFGFHM  193 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~g~~~  193 (296)
                      .+||+|||||++|+++|..|++.|++|+|+|  +.       .+||+|.+.+|+|++.+.......+... ....++++.
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE--~~-------~~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~   73 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVE--PK-------YWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISG   73 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEC--SS-------CTTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEe--CC-------CCCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            4799999999999999999999999999999  32       5789999999999988777666555544 445566652


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCCCCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDIPG  270 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~p~i~G  270 (296)
                      ...+++..+..+.....+.+...+...+++.+++++.++....+.+.+++   +|+..++.+|+||+|||++|..|+++|
T Consensus        74 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~~~~~g  153 (464)
T 2a8x_A           74 EVTFDYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTS  153 (464)
T ss_dssp             CCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEESSSSEEEEEETTSCCEEEEEEEEEECCCEEECCCTTCC
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCC
Confidence            12567777777666666666666777778889999988776666666666   343357999999999999999999999


Q ss_pred             Cccceeec--ccCC-CCCCcEEEeecc
Q psy7665         271 ARLLRTLS--LLSG-VDPPTLIFLEHI  294 (296)
Q Consensus       271 ~~~~~~~s--~~~~-~~~~~~~~~~~~  294 (296)
                      .+..+.++  .+.. ..+++++|++++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~vvViGgG  180 (464)
T 2a8x_A          154 LSANVVTYEEQILSRELPKSIIIAGAG  180 (464)
T ss_dssp             CBTTEECHHHHHTCSSCCSEEEEECCS
T ss_pred             CCceEEecHHHhhccccCCeEEEECCc
Confidence            76545554  2332 346778888654

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=99.78  E-value=2.1e-18  Score=159.78  Aligned_cols=170  Identities=29%  Similarity=0.459  Sum_probs=126.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhh-cccccCccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEAT-TSDNFGFHM  193 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~g~~~  193 (296)
                      .+||+|||||++|+.+|.+|++.|++|+|+|  +.+      .+||+|.+.+|+|++.+.......+.+. .+..++++.
T Consensus         5 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE--~~~------~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~   76 (478)
T 1v59_A            5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVE--KRG------KLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDV   76 (478)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEE--SSS------SSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEe--cCC------CcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            5799999999999999999999999999999  555      7899999999999998887766665554 455666654


Q ss_pred             -cc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE---cceeEE------EEeCeEEEcCCCC
Q psy7665         194 -KK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERT------VSAQNFIIAVGGR  262 (296)
Q Consensus       194 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v---~g~~~~------~~a~~vV~AtG~~  262 (296)
                       .. .+++..+..+.....+.+...+...+++.+++++.++....+.+.+.+   +|....      +.||+||+|||++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~  156 (478)
T 1v59_A           77 NGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSE  156 (478)
T ss_dssp             CSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEE
T ss_pred             CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEecCCCcccccccceEEeCEEEECcCCC
Confidence             22 567888877777777777766777788889999988876666666666   332234      8999999999998


Q ss_pred             CCCCCCCCCc---cceeec--ccCC-CCCCcEEEeecc
Q psy7665         263 PTYPDIPGAR---LLRTLS--LLSG-VDPPTLIFLEHI  294 (296)
Q Consensus       263 p~~p~i~G~~---~~~~~s--~~~~-~~~~~~~~~~~~  294 (296)
                      |.  .+||.+   ..+.++  .+.. ..+++++|++++
T Consensus       157 p~--~~~g~~~~~~~v~~~~~~~~~~~~~~~vvViGgG  192 (478)
T 1v59_A          157 VT--PFPGIEIDEEKIVSSTGALSLKEIPKRLTIIGGG  192 (478)
T ss_dssp             EC--CCTTCCCCSSSEECHHHHTTCSSCCSEEEEECCS
T ss_pred             CC--CCCCCCCCCceEEcHHHHHhhhccCceEEEECCC
Confidence            73  345543   124444  2222 346778888654

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=99.77  E-value=2.6e-18  Score=160.93  Aligned_cols=166  Identities=27%  Similarity=0.403  Sum_probs=118.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..+||+|||||++|+++|.+|++.|++|+|||  +.+      .+||+|.+.+|+|++.+...............+++ +
T Consensus        42 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE--~~~------~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~-~  112 (523)
T 1mo9_A           42 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVD--RWP------FLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYW-F  112 (523)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEEE--SSS------SSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTT-C
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEe--CCC------CCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCc-H
Confidence            46899999999999999999999999999999  554      58999999999999988877666665555555554 1


Q ss_pred             ccc----CCHHHHHHHHHHHHHHHHHHHHHHH-----HHCCcEEE-cceEEEEeCCEEEEcceeEEEEeCeEEEcCCCCC
Q psy7665         194 KKS----FTWKTLVDNVQKYIRNLNNNYEKEL-----EKNKIDYF-NAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRP  263 (296)
Q Consensus       194 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~-~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~p  263 (296)
                      ...    ++...+..++......    ....+     ++.+++++ .+++...+.+.+.+++  ..+.+|+||+|||++|
T Consensus       113 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~v~~~g--~~~~~d~lViATGs~p  186 (523)
T 1mo9_A          113 PDMTEKVVGIKEVVDLFRAGRNG----PHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAAG--KVFKAKNLILAVGAGP  186 (523)
T ss_dssp             CCCTTCCCCHHHHHHHHHHHTHH----HHHHHHHHHHHTSCCCEEESSCCEEEETTEEEETT--EEEEBSCEEECCCEEC
T ss_pred             HHHHhhhhhHHHHHHHHHhhhhh----hhhhhhhcccccCCcEEEEeeEEEEeeCCEEEECC--EEEEeCEEEECCCCCC
Confidence            111    1133333333221110    01334     66799998 7777667777787765  6799999999999999


Q ss_pred             CCCCCCCCccc-eeec--cc-C-CCCC-CcEEEeecc
Q psy7665         264 TYPDIPGARLL-RTLS--LL-S-GVDP-PTLIFLEHI  294 (296)
Q Consensus       264 ~~p~i~G~~~~-~~~s--~~-~-~~~~-~~~~~~~~~  294 (296)
                      ..|++||.+.. ++++  .+ . ...+ ++++|++++
T Consensus       187 ~~p~i~G~~~~~v~~~~~~~~~l~~~~g~~vvViGgG  223 (523)
T 1mo9_A          187 GTLDVPGVNAKGVFDHATLVEELDYEPGSTVVVVGGS  223 (523)
T ss_dssp             CCCCSTTTTSBTEEEHHHHHHHCCSCCCSEEEEECCS
T ss_pred             CCCCCCCcccCcEeeHHHHHHHHHhcCCCeEEEECCC
Confidence            99999998743 5554  23 2 3346 678877653

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.72  E-value=3.1e-17  Score=143.43  Aligned_cols=139  Identities=21%  Similarity=0.218  Sum_probs=90.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      .+|||+||||||||++||.+|+++|++|+|||  +.       .+||+|.+.+|+|..                 .++. 
T Consensus         5 ~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE--~~-------~~gG~~~~~~~i~~~-----------------p~~~-   57 (312)
T 4gcm_A            5 IDFDIAIIGAGPAGMTAAVYASRANLKTVMIE--RG-------IPGGQMANTEEVENF-----------------PGFE-   57 (312)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEE--SS-------CTTGGGGGCSCBCCS-----------------TTCS-
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEe--cC-------CCCCeeecccccCCc-----------------CCcc-
Confidence            57999999999999999999999999999999  32       789999999887531                 1111 


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceE-E-EEeCCEEEE--cceeEEEEeCeEEEcCCCCCCCCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA-V-FVDKHRVKF--AGEERTVSAQNFIIAVGGRPTYPDIP  269 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~~~~~v~v--~g~~~~~~a~~vV~AtG~~p~~p~i~  269 (296)
                        .....++....           .....+....+..... . ........+  ++  .++.||+||+|||++|+.|++|
T Consensus        58 --~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~liiAtGs~~~~~~ip  122 (312)
T 4gcm_A           58 --MITGPDLSTKM-----------FEHAKKFGAVYQYGDIKSVEDKGEYKVINFGN--KELTAKAVIIATGAEYKKIGVP  122 (312)
T ss_dssp             --SBCHHHHHHHH-----------HHHHHHTTCEEEECCCCEEEECSSCEEEECSS--CEEEEEEEEECCCEEECCCCCT
T ss_pred             --ccchHHHHHHH-----------HHHHhhccccccceeeeeeeeeecceeeccCC--eEEEeceeEEcccCccCcCCCC
Confidence              22233322221           2223334455443321 1 122222222  44  6799999999999999999999


Q ss_pred             CCccceeec-------ccCCCCCCcEEEeecc
Q psy7665         270 GARLLRTLS-------LLSGVDPPTLIFLEHI  294 (296)
Q Consensus       270 G~~~~~~~s-------~~~~~~~~~~~~~~~~  294 (296)
                      |.+++....       ......+++++||+++
T Consensus       123 G~~~~~~~~v~~~~~~~~~~~~~k~vvViGgG  154 (312)
T 4gcm_A          123 GEQELGGRGVSYCAVCDGAFFKNKRLFVIGGG  154 (312)
T ss_dssp             TTTTTBTTTEESCHHHHGGGGTTCEEEEECCS
T ss_pred             ChhhhCCccEEeeeccCccccCCCEEEEECCC
Confidence            987543221       1223346788888754

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.68  E-value=5.1e-17  Score=141.87  Aligned_cols=146  Identities=18%  Similarity=0.201  Sum_probs=92.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK  194 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~  194 (296)
                      .|||+||||||||++||.+|+++|++|+|+|  +.       ..||.|.+ +|+|++...+           ...+++. 
T Consensus         4 ~yDvvIIG~GpAGl~AA~~la~~g~~v~liE--~~-------~~gg~~~~-G~~~~~~~i~-----------~~~g~~~-   61 (314)
T 4a5l_A            4 IHDVVIIGSGPAAHTAAIYLGRSSLKPVMYE--GF-------MAGGVAAG-GQLTTTTIIE-----------NFPGFPN-   61 (314)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCCEEEC--CS-------SGGGCCTT-CGGGGSSEEC-----------CSTTCTT-
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEe--cC-------CCCCcccC-CCcCChHHhh-----------hccCCcc-
Confidence            4899999999999999999999999999999  32       56777765 6766532110           1112221 


Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEE--eCC-EEEEcceeEEEEeCeEEEcCCCCCCCCCCCCC
Q psy7665         195 KSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFV--DKH-RVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA  271 (296)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~-~v~v~g~~~~~~a~~vV~AtG~~p~~p~i~G~  271 (296)
                       .++..++..+           +...+++.++++........  ... ...+.++..++.+|+||+|||++|+.|++||.
T Consensus        62 -~i~~~~l~~~-----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~~~ipG~  129 (314)
T 4a5l_A           62 -GIDGNELMMN-----------MRTQSEKYGTTIITETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKRMHVPGE  129 (314)
T ss_dssp             -CEEHHHHHHH-----------HHHHHHHTTCEEECCCEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECCCCCTTH
T ss_pred             -cCCHHHHHHH-----------HHHHHhhcCcEEEEeEEEEeecCCCceEEEECCCeEEEEeEEEEcccccccccCCCcc
Confidence             2333333332           23334556777766554322  122 22222222679999999999999999999998


Q ss_pred             ccceeec---------ccCCCCCCcEEEeecc
Q psy7665         272 RLLRTLS---------LLSGVDPPTLIFLEHI  294 (296)
Q Consensus       272 ~~~~~~s---------~~~~~~~~~~~~~~~~  294 (296)
                      +.+....         ......+++++++.++
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG  161 (314)
T 4a5l_A          130 DKYWQNGVSACAICDGAVPIFRNKVLMVVGGG  161 (314)
T ss_dssp             HHHBTTTEESCHHHHTTSGGGTTSEEEEECSS
T ss_pred             ccccccceeeehhhhhhhhhcCCCeEEEECCC
Confidence            7443221         1112345678887754

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.66  E-value=2.9e-16  Score=136.87  Aligned_cols=118  Identities=21%  Similarity=0.351  Sum_probs=74.1

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcc
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFH  192 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~  192 (296)
                      +..|||+||||||+|++||++|+++|++|+|||  +.       ..||.+...                      .+++.
T Consensus         4 M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie--~~-------~~gg~~~~~----------------------~~~~~   52 (304)
T 4fk1_A            4 MKYIDCAVIGAGPAGLNASLVLGRARKQIALFD--NN-------TNRNRVTQN----------------------SHGFI   52 (304)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTTCCEEEEE--CS-------CCGGGGSSC----------------------BCCST
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEe--CC-------CCCCeeeee----------------------cCCcc
Confidence            456999999999999999999999999999999  33       445533111                      11221


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CcEEEcceEEEE---eC--CEEEE-cceeEEEEeCeEEEcCCCCCCC
Q psy7665         193 MKKSFTWKTLVDNVQKYIRNLNNNYEKELEKN-KIDYFNAKAVFV---DK--HRVKF-AGEERTVSAQNFIIAVGGRPTY  265 (296)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~---~~--~~v~v-~g~~~~~~a~~vV~AtG~~p~~  265 (296)
                      ........++....           ...+.+. .+.++.......   +.  +.+.. ++  .++.||+||+|||++|+.
T Consensus        53 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g--~~~~a~~liiATGs~p~~  119 (304)
T 4fk1_A           53 TRDGIKPEEFKEIG-----------LNEVMKYPSVHYYEKTVVMITKQSTGLFEIVTKDH--TKYLAERVLLATGMQEEF  119 (304)
T ss_dssp             TCTTBCHHHHHHHH-----------HHHHTTSTTEEEEECCEEEEEECTTSCEEEEETTC--CEEEEEEEEECCCCEEEC
T ss_pred             CCCCCCHHHHHHHH-----------HHHHHhcCCEEEEeeEEEEeeecCCCcEEEEECCC--CEEEeCEEEEccCCcccc
Confidence            11122333333221           1222332 455555544322   22  23444 55  679999999999999999


Q ss_pred             CCCCCCccc
Q psy7665         266 PDIPGARLL  274 (296)
Q Consensus       266 p~i~G~~~~  274 (296)
                      |++||.+++
T Consensus       120 p~i~G~~~~  128 (304)
T 4fk1_A          120 PSIPNVREY  128 (304)
T ss_dssp             CSCTTHHHH
T ss_pred             ccccCcccc
Confidence            999998754

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.53  E-value=5.2e-14  Score=132.08  Aligned_cols=158  Identities=18%  Similarity=0.178  Sum_probs=90.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhh---hhHHHhhcccccC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRAS---LLNEEATTSDNFG  190 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~---~~~~~~~~~~~~g  190 (296)
                      ..+||+|||||++|+.+|.+|++.|.+|+|||  +.+      .+||+|. ..++|........   .+.........+.
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE--~~~------~~GGtw~-~~~yPg~~~d~~~~~y~~~f~~~~~~~~~   78 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIE--AGE------DVGGTWY-WNRYPGCRLDTESYAYGYFALKGIIPEWE   78 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEC--SSS------SSCTHHH-HCCCTTCBCSSCHHHHCHHHHTTSSTTCC
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEe--CCC------CCCCccc-cCCCCceeecCchhhcccccCcccccCCC
Confidence            45799999999999999999999999999999  666      8899984 3344421110000   0000001111122


Q ss_pred             ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCc--EEEcc-eE---EEEe---CCEEEE-cceeEEEEeCeEEEcCC
Q psy7665         191 FHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKI--DYFNA-KA---VFVD---KHRVKF-AGEERTVSAQNFIIAVG  260 (296)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~-~~---~~~~---~~~v~v-~g~~~~~~a~~vV~AtG  260 (296)
                      +... ..+..++..++....+.+           ++  .+..+ ++   .+.+   .+.|++ +|  .++.||+||+|+|
T Consensus        79 ~~~~-~~~~~ei~~yl~~~~~~~-----------~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G--~~~~ad~lV~AtG  144 (545)
T 3uox_A           79 WSEN-FASQPEMLRYVNRAADAM-----------DVRKHYRFNTRVTAARYVENDRLWEVTLDNE--EVVTCRFLISATG  144 (545)
T ss_dssp             CSBS-SCBHHHHHHHHHHHHHHH-----------TCGGGEECSCCEEEEEEEGGGTEEEEEETTT--EEEEEEEEEECCC
T ss_pred             cccc-CCCHHHHHHHHHHHHHHc-----------CCcCcEEECCEEEEEEEeCCCCEEEEEECCC--CEEEeCEEEECcC
Confidence            2111 344555555555444433           22  23222 21   1222   135555 55  5789999999999


Q ss_pred             --CCCCCCCCCCCcccee----ecccC----------CCCCCcEEEeecc
Q psy7665         261 --GRPTYPDIPGARLLRT----LSLLS----------GVDPPTLIFLEHI  294 (296)
Q Consensus       261 --~~p~~p~i~G~~~~~~----~s~~~----------~~~~~~~~~~~~~  294 (296)
                        ++|..|++||.+.|..    ++.|.          ...+++++||+.+
T Consensus       145 ~~s~p~~p~ipG~~~f~g~~~h~~~~~~~~~~~~~~~~~~~krV~VIG~G  194 (545)
T 3uox_A          145 PLSASRMPDIKGIDSFKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTG  194 (545)
T ss_dssp             SCBC---CCCTTGGGCCSEEEEGGGCCBCTTSCBSCCCCBTCEEEEECCS
T ss_pred             CCCCCcCCCCCCccccCCCeEEcccccccccccccccccCCCeEEEECCC
Confidence              7899999999886532    22222          2245667777654

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.52  E-value=8.7e-14  Score=121.09  Aligned_cols=139  Identities=17%  Similarity=0.178  Sum_probs=89.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEE-EeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVAL-FDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFH  192 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~i-iE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~  192 (296)
                      ..+||+|||||++|+++|.+|++.|++|+| +|  + +      .+||.|.+..+++.                 ..+++
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e--~-~------~~gG~~~~~~~~~~-----------------~~~~~   56 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFE--K-G------MPGGQITSSSEIEN-----------------YPGVA   56 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEEC--S-S------STTGGGGGCSCBCC-----------------STTCC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEe--C-C------CCCceeeeeceecc-----------------CCCCC
Confidence            347999999999999999999999999999 99  5 4      67887755433210                 11111


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEE-eC--CEEE--E-cceeEEEEeCeEEEcCCCCCCCC
Q psy7665         193 MKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFV-DK--HRVK--F-AGEERTVSAQNFIIAVGGRPTYP  266 (296)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~--~~v~--v-~g~~~~~~a~~vV~AtG~~p~~p  266 (296)
                      .  ......+..+           +...+++.+++++.++.... +.  ..+.  + ++.  .+.+|+||+|||+.|+.|
T Consensus        57 ~--~~~~~~~~~~-----------~~~~~~~~~v~~~~~~v~~i~~~~~~~~~v~~~~~~--~~~~d~lvlAtG~~~~~~  121 (315)
T 3r9u_A           57 Q--VMDGISFMAP-----------WSEQCMRFGLKHEMVGVEQILKNSDGSFTIKLEGGK--TELAKAVIVCTGSAPKKA  121 (315)
T ss_dssp             S--CBCHHHHHHH-----------HHHHHTTTCCEEECCCEEEEEECTTSCEEEEETTSC--EEEEEEEEECCCEEECCC
T ss_pred             C--CCCHHHHHHH-----------HHHHHHHcCcEEEEEEEEEEecCCCCcEEEEEecCC--EEEeCEEEEeeCCCCCCC
Confidence            0  2233333333           33445556888887755433 33  2344  5 332  789999999999999999


Q ss_pred             CCCCCccceeecc-------cCCCCCCcEEEeec
Q psy7665         267 DIPGARLLRTLSL-------LSGVDPPTLIFLEH  293 (296)
Q Consensus       267 ~i~G~~~~~~~s~-------~~~~~~~~~~~~~~  293 (296)
                      ++||.+.+....+       .....+++++++..
T Consensus       122 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~  155 (315)
T 3r9u_A          122 GFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGG  155 (315)
T ss_dssp             CCBTTTTTBTTTEESCHHHHGGGGTTSEEEEECC
T ss_pred             CCCChhhcCCCeEEeeecccccccCcCEEEEECC
Confidence            9999875322111       12234566777754

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.52  E-value=8.9e-14  Score=119.99  Aligned_cols=136  Identities=20%  Similarity=0.299  Sum_probs=83.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK  194 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~  194 (296)
                      .+||+|||||++|+++|.+|++.|++|+|+|  +..      ..+..+..                       .++++..
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie--~~~------~~~~~~~~-----------------------~~~~~~~   50 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARKNILLVD--AGE------RRNRFASH-----------------------SHGFLGQ   50 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEE--CCC------CGGGGCSC-----------------------CCSSTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEe--CCC------cccccchh-----------------------hcCCcCC
Confidence            3799999999999999999999999999999  432      11111000                       0111111


Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CcEEEcceEEEEe--C--CEEEE-cceeEEEEeCeEEEcCCCCCCCCCC
Q psy7665         195 KSFTWKTLVDNVQKYIRNLNNNYEKELEKN-KIDYFNAKAVFVD--K--HRVKF-AGEERTVSAQNFIIAVGGRPTYPDI  268 (296)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~--~--~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~i  268 (296)
                      ...+...+..++           ...+.+. +++++.+++...+  .  +.+.+ ++  ..+.||+||+|||++|+.|++
T Consensus        51 ~~~~~~~~~~~~-----------~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g--~~~~~d~vviAtG~~~~~~~~  117 (297)
T 3fbs_A           51 DGKAPGEIIAEA-----------RRQIERYPTIHWVEGRVTDAKGSFGEFIVEIDGG--RRETAGRLILAMGVTDELPEI  117 (297)
T ss_dssp             TTCCHHHHHHHH-----------HHHHTTCTTEEEEESCEEEEEEETTEEEEEETTS--CEEEEEEEEECCCCEEECCCC
T ss_pred             CCCCHHHHHHHH-----------HHHHHhcCCeEEEEeEEEEEEEcCCeEEEEECCC--CEEEcCEEEECCCCCCCCCCC
Confidence            122333333332           3334444 6777766554332  2  34555 45  579999999999999999999


Q ss_pred             CCCcccee----ecc---cCCCCCCcEEEeecc
Q psy7665         269 PGARLLRT----LSL---LSGVDPPTLIFLEHI  294 (296)
Q Consensus       269 ~G~~~~~~----~s~---~~~~~~~~~~~~~~~  294 (296)
                      ||.+.+..    ++.   .....++++++++.+
T Consensus       118 ~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G  150 (297)
T 3fbs_A          118 AGLRERWGSAVFHCPYCHGYELDQGKIGVIAAS  150 (297)
T ss_dssp             BTTGGGBTTTEESCHHHHTGGGTTCEEEEECCS
T ss_pred             CCchhhcCCeeEEcccCcchhhcCCEEEEEecC
Confidence            99875432    221   112245667777653

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.52  E-value=1.9e-13  Score=119.91  Aligned_cols=140  Identities=19%  Similarity=0.180  Sum_probs=89.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..+||+|||||++|+++|.+|++.|++|+|+|  +.       .+||.|.+..++.                 ...+++.
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie--~~-------~~gg~~~~~~~~~-----------------~~~~~~~   60 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQLSTLILE--KG-------MPGGQIAWSEEVE-----------------NFPGFPE   60 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEE--SS-------CTTGGGGGCSCBC-----------------CSTTCSS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCCcEEEEe--CC-------CCCcccccccccc-----------------cCCCCCC
Confidence            45799999999999999999999999999999  33       4677765543221                 0111111


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEE--e---C--CEEEE-cceeEEEEeCeEEEcCCCCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFV--D---K--HRVKF-AGEERTVSAQNFIIAVGGRPTY  265 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~---~--~~v~v-~g~~~~~~a~~vV~AtG~~p~~  265 (296)
                        .+.+..+..           .+...+++.+++++.++....  .   .  +.+.. ++  ..+.||+||+|||++|..
T Consensus        61 --~~~~~~~~~-----------~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~~~v~~~~g--~~~~~~~vv~AtG~~~~~  125 (325)
T 2q7v_A           61 --PIAGMELAQ-----------RMHQQAEKFGAKVEMDEVQGVQHDATSHPYPFTVRGYN--GEYRAKAVILATGADPRK  125 (325)
T ss_dssp             --CBCHHHHHH-----------HHHHHHHHTTCEEEECCEEEEEECTTSSSCCEEEEESS--CEEEEEEEEECCCEEECC
T ss_pred             --CCCHHHHHH-----------HHHHHHHHcCCEEEeeeEEEEEeccCCCceEEEEECCC--CEEEeCEEEECcCCCcCC
Confidence              122322222           233445566888876654332  2   2  35544 55  578999999999999999


Q ss_pred             CCCCCCccce----eec---ccCCCCCCcEEEeecc
Q psy7665         266 PDIPGARLLR----TLS---LLSGVDPPTLIFLEHI  294 (296)
Q Consensus       266 p~i~G~~~~~----~~s---~~~~~~~~~~~~~~~~  294 (296)
                      |++||.+++.    ..+   .......+++++++.+
T Consensus       126 ~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G  161 (325)
T 2q7v_A          126 LGIPGEDNFWGKGVSTCATCDGFFYKGKKVVVIGGG  161 (325)
T ss_dssp             CCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCS
T ss_pred             CCCCChhhccCceEEEeccCCHHHcCCCEEEEECCC
Confidence            9999986532    111   1112334677777653

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.51  E-value=9.3e-14  Score=127.47  Aligned_cols=162  Identities=17%  Similarity=0.148  Sum_probs=91.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCC--cEEEEeccCCCCCCcccccCCeeeccCCC------chhHH------------
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNK--KVALFDFVTPSQHGTVWGLGGTCVNVGCI------PKKLF------------  173 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE~~~~~~~g~~~~~GG~~~~~~~~------p~~~~------------  173 (296)
                      ..+||+|||||++|+++|.+|++.|.  +|+|||  +.+      .+||.|.+..+.      |....            
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E--~~~------~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~   76 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFE--RRG------SPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAA   76 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEEC--SSS------SSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEe--cCC------CCCCeecCCCCCCcccccccccccccccccccccc
Confidence            34699999999999999999999999  999999  666      678888665431      11000            


Q ss_pred             --------HH--hhhhHHHhhcccccCccccc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcce-EEEE--eC
Q psy7665         174 --------HR--ASLLNEEATTSDNFGFHMKK--SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK-AVFV--DK  238 (296)
Q Consensus       174 --------~~--~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--~~  238 (296)
                              +.  ..........+..+.++...  .+.+..+.+++..+.+.+           +..+..++ +..+  ..
T Consensus        77 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----------~~~i~~~t~V~~v~~~~  145 (447)
T 2gv8_A           77 LPVYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPL-----------LPFIKLATDVLDIEKKD  145 (447)
T ss_dssp             CCBCCCCCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGG-----------GGGEECSEEEEEEEEET
T ss_pred             cCCccCchhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-----------hCeEEeCCEEEEEEeCC
Confidence                    00  00000001111111111110  233445555554444332           23343322 2211  22


Q ss_pred             --CEEEE-c---ce-eEEEEeCeEEEcCCC--CCCCCCCCCCccc-------eeecc--cCC--CCCCcEEEeecc
Q psy7665         239 --HRVKF-A---GE-ERTVSAQNFIIAVGG--RPTYPDIPGARLL-------RTLSL--LSG--VDPPTLIFLEHI  294 (296)
Q Consensus       239 --~~v~v-~---g~-~~~~~a~~vV~AtG~--~p~~p~i~G~~~~-------~~~s~--~~~--~~~~~~~~~~~~  294 (296)
                        +.|++ +   |+ ..++.||+||+|||.  .|+.|++||.+++       +.++.  ...  ...++++||+.+
T Consensus       146 ~~~~V~~~~~~~G~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~~~~~~~k~VvVvG~G  221 (447)
T 2gv8_A          146 GSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGA  221 (447)
T ss_dssp             TEEEEEEEESSTTCCEEEEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSS
T ss_pred             CeEEEEEeecCCCCeeEEEEeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCChhhcCCCEEEEEccC
Confidence              45555 3   43 347899999999998  8888999998643       45442  111  135678887654

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.51  E-value=3.6e-13  Score=124.14  Aligned_cols=160  Identities=12%  Similarity=0.171  Sum_probs=91.2

Q ss_pred             ccEEEECCChHHHHHHHHHHh---CCCc---EEEEeccCCCCCCcccccCCeeecc---CCCchhHHHHhhhhH----HH
Q psy7665         116 YDLCVIGGGSGGISAAKEAAS---MNKK---VALFDFVTPSQHGTVWGLGGTCVNV---GCIPKKLFHRASLLN----EE  182 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~---~G~~---V~iiE~~~~~~~g~~~~~GG~~~~~---~~~p~~~~~~~~~~~----~~  182 (296)
                      +||+|||||++|+++|.+|++   .|.+   |+|||  +.+      .+||.|.+.   +|.+.........+.    +.
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E--~~~------~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~   74 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFE--KQA------DWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNG   74 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEEC--SSS------SSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSS
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEE--cCC------CCCCEeecCCCCCccccCCCCcCccccchhhcC
Confidence            589999999999999999999   9999   99999  666      788888653   232210000000000    00


Q ss_pred             hh-cccccCccc--------cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcE--EEcc-eEEEE--e----CCEEEE-
Q psy7665         183 AT-TSDNFGFHM--------KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKID--YFNA-KAVFV--D----KHRVKF-  243 (296)
Q Consensus       183 ~~-~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~-~~~~~--~----~~~v~v-  243 (296)
                      .. .+...++++        ...++...+..++..+++           +.+++  +..+ ++..+  .    .+.|++ 
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----------~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~  143 (464)
T 2xve_A           75 PKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVE-----------KAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQ  143 (464)
T ss_dssp             CGGGTCBTTBCHHHHHSSCCCSSCBHHHHHHHHHHHHH-----------HHTCGGGEECSEEEEEEEEETTTTEEEEEEE
T ss_pred             ChhhcccCCCCCCcccCCCCCCCCCHHHHHHHHHHHHH-----------HcCCcceEEeCCEEEEEEEcCCCCcEEEEEE
Confidence            00 000011111        012334444444444333           33554  4433 22221  1    235665 


Q ss_pred             c---ceeEEEEeCeEEEcCC--CCCCCCCCCCCccc---eeecc--cCC--CCCCcEEEeecc
Q psy7665         244 A---GEERTVSAQNFIIAVG--GRPTYPDIPGARLL---RTLSL--LSG--VDPPTLIFLEHI  294 (296)
Q Consensus       244 ~---g~~~~~~a~~vV~AtG--~~p~~p~i~G~~~~---~~~s~--~~~--~~~~~~~~~~~~  294 (296)
                      +   |+..++.||+||+|||  +.|+.|++||.+.+   ++++.  ...  ..+++++||+.+
T Consensus       144 ~~~~g~~~~~~~d~VVvAtG~~s~p~~p~ipG~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G  206 (464)
T 2xve_A          144 DHTTDTIYSEEFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSS  206 (464)
T ss_dssp             ETTTTEEEEEEESEEEECCCSSSSBCCCCCBTTTTCCSEEEEGGGCCCGGGGTTSEEEEECCS
T ss_pred             EcCCCceEEEEcCEEEECCCCCCCCccCCCCCcccCCceEEehhhhCCHhHcCCCEEEEEcCC
Confidence            3   3346789999999999  79999999998764   34442  111  245678887754

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.50  E-value=8.7e-14  Score=130.70  Aligned_cols=155  Identities=18%  Similarity=0.262  Sum_probs=92.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeecc---CC---CchhHHHHhhhhHHHhhccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNV---GC---IPKKLFHRASLLNEEATTSD  187 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~---~~---~p~~~~~~~~~~~~~~~~~~  187 (296)
                      ..+||+|||||++|+.+|.+|++.|.+|+|||  +.+      .+||+|...   +|   +|+..+...... +..   .
T Consensus        20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE--~~~------~~GGtw~~~~ypg~~~dv~s~~y~~~f~~-~~~---~   87 (549)
T 4ap3_A           20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFE--AAS------GVGGVWYWNRYPGARCDVESIDYSYSFSP-ELE---Q   87 (549)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEC--SSS------SSCTHHHHCCCTTCBCSSCTTTSSCCSCH-HHH---H
T ss_pred             CCCCEEEECchHHHHHHHHHHHhCCCCEEEEe--CCC------CCCCccccCCCCCceeCCCchhccccccc-ccc---c
Confidence            45799999999999999999999999999999  666      889998533   33   443322211000 000   0


Q ss_pred             ccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCc--EEEcc-eEE---EEeC---CEEEE-cceeEEEEeCeEEE
Q psy7665         188 NFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKI--DYFNA-KAV---FVDK---HRVKF-AGEERTVSAQNFII  257 (296)
Q Consensus       188 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~-~~~---~~~~---~~v~v-~g~~~~~~a~~vV~  257 (296)
                      .+.+... ..+..++..++....           ++.++  .+..+ ++.   +.+.   +.|++ +|  .++.||+||+
T Consensus        88 ~~~~~~~-~~~~~ei~~yl~~~~-----------~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G--~~i~ad~lV~  153 (549)
T 4ap3_A           88 EWNWSEK-YATQPEILAYLEHVA-----------DRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRG--DEVSARFLVV  153 (549)
T ss_dssp             HCCCSSS-SCBHHHHHHHHHHHH-----------HHTTCGGGEECSCCEEEEEEETTTTEEEEEETTC--CEEEEEEEEE
T ss_pred             CCCCccC-CCCHHHHHHHHHHHH-----------HHcCCCccEEECCEEEEEEEcCCCCEEEEEECCC--CEEEeCEEEE
Confidence            1111110 234444444444333           33344  34333 221   1222   25555 55  4689999999


Q ss_pred             cCC--CCCCCCCCCCCccce---eec-ccC----CCCCCcEEEeecc
Q psy7665         258 AVG--GRPTYPDIPGARLLR---TLS-LLS----GVDPPTLIFLEHI  294 (296)
Q Consensus       258 AtG--~~p~~p~i~G~~~~~---~~s-~~~----~~~~~~~~~~~~~  294 (296)
                      |||  ++|..|++||.++|.   +++ .|.    ...+++++||+.+
T Consensus       154 AtG~~s~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~~krV~VIG~G  200 (549)
T 4ap3_A          154 AAGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTG  200 (549)
T ss_dssp             CCCSEEECCCCCCTTGGGCCSEEEEGGGCCTTCCCCBTCEEEEECCS
T ss_pred             CcCCCCCCCCCCCCCcccCCCceEEeccccccccccCCCEEEEECCC
Confidence            999  799999999998653   222 222    1235567777654

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.50  E-value=1.1e-13  Score=120.51  Aligned_cols=136  Identities=18%  Similarity=0.302  Sum_probs=87.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKK  195 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~  195 (296)
                      +||+|||||++|+++|.+|++.|++|+|+|  +        ..||.|.....++.                 ..+..   
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~v~li~--~--------~~gG~~~~~~~~~~-----------------~~~~~---   51 (310)
T 1fl2_A            2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMG--E--------RFGGQILDTVDIEN-----------------YISVP---   51 (310)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEEC--S--------STTGGGGGCCEECC-----------------BTTBS---
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEe--C--------CCCceecccccccc-----------------ccCcC---
Confidence            799999999999999999999999999998  2        45777644322110                 00110   


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcc-eEEEEe-------CCEEEE-cceeEEEEeCeEEEcCCCCCCCC
Q psy7665         196 SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA-KAVFVD-------KHRVKF-AGEERTVSAQNFIIAVGGRPTYP  266 (296)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~-------~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p  266 (296)
                      ..+...+.           ..+...+++.+++++.+ ++...+       .+.+.+ ++  ..+.||+||+|||++|..|
T Consensus        52 ~~~~~~~~-----------~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g--~~~~~~~lv~AtG~~~~~~  118 (310)
T 1fl2_A           52 KTEGQKLA-----------GALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASG--AVLKARSIIVATGAKWRNM  118 (310)
T ss_dssp             SEEHHHHH-----------HHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTS--CEEEEEEEEECCCEEECCC
T ss_pred             CCCHHHHH-----------HHHHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCC--CEEEeCEEEECcCCCcCCC
Confidence            11222222           22334456678998877 554442       234555 44  5689999999999999999


Q ss_pred             CCCCCccceeeccc-------CCCCCCcEEEeecc
Q psy7665         267 DIPGARLLRTLSLL-------SGVDPPTLIFLEHI  294 (296)
Q Consensus       267 ~i~G~~~~~~~s~~-------~~~~~~~~~~~~~~  294 (296)
                      ++||.+++.....+       ....++++++++.+
T Consensus       119 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G  153 (310)
T 1fl2_A          119 NVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGG  153 (310)
T ss_dssp             CCTTTTTTBTTTEESCHHHHGGGGBTCEEEEECCS
T ss_pred             CCCChhhcccceeEEeccCcHhhcCCCEEEEECCC
Confidence            99998654221111       12345677777643

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.49  E-value=1.4e-13  Score=128.94  Aligned_cols=155  Identities=18%  Similarity=0.292  Sum_probs=91.3

Q ss_pred             ccccEEEECCChHHHHHHHHHH-hCCCcEEEEeccCCCCCCcccccCCeeecc---CC---CchhHHHHhhhhHHHhhcc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAA-SMNKKVALFDFVTPSQHGTVWGLGGTCVNV---GC---IPKKLFHRASLLNEEATTS  186 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~-~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~---~~---~p~~~~~~~~~~~~~~~~~  186 (296)
                      ..+||+|||||++|+.+|..|+ +.|.+|+|+|  +.+      .+||+|...   +|   +|+..+.....  ...  .
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE--~~~------~~GGtw~~~~ypg~~~d~~s~~~~~~~~--~~~--~   74 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFD--KAD------GPGGTWYWNRYPGALSDTESHLYRFSFD--RDL--L   74 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEE--SSS------SSCTHHHHCCCTTCEEEEEGGGSSCCSC--HHH--H
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEE--CCC------CCCCcccccCCCCceecCCcceeeeccc--ccc--c
Confidence            4579999999999999999999 9999999999  666      789988543   33   33322221100  000  0


Q ss_pred             cccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCc--EEEcc-eEE---EEeC---CEEEE-cceeEEEEeCeEE
Q psy7665         187 DNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKI--DYFNA-KAV---FVDK---HRVKF-AGEERTVSAQNFI  256 (296)
Q Consensus       187 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~-~~~---~~~~---~~v~v-~g~~~~~~a~~vV  256 (296)
                      ..+++... ..+..++..++...           +++.++  ++..+ ++.   ..+.   +.|++ +|  .++.||+||
T Consensus        75 ~~~~~~~~-~~~~~ei~~~l~~~-----------~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G--~~i~ad~lV  140 (540)
T 3gwf_A           75 QESTWKTT-YITQPEILEYLEDV-----------VDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHG--EVYRAKYVV  140 (540)
T ss_dssp             HHCCCSBS-EEEHHHHHHHHHHH-----------HHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTS--CEEEEEEEE
T ss_pred             cCCCCccc-CCCHHHHHHHHHHH-----------HHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCC--CEEEeCEEE
Confidence            01111110 22334444443333           333455  44332 221   1221   24555 55  468999999


Q ss_pred             EcCC--CCCCCCCCCCCcccee---e-cccC---CCCCCcEEEeecc
Q psy7665         257 IAVG--GRPTYPDIPGARLLRT---L-SLLS---GVDPPTLIFLEHI  294 (296)
Q Consensus       257 ~AtG--~~p~~p~i~G~~~~~~---~-s~~~---~~~~~~~~~~~~~  294 (296)
                      +|||  ++|..|++||.++|..   + +.|.   ...+++++||+.+
T Consensus       141 ~AtG~~s~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~krV~VIG~G  187 (540)
T 3gwf_A          141 NAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGVIGTG  187 (540)
T ss_dssp             ECCCSCCSBCCCCCTTGGGCCSEEEEGGGCCSSCCCTTSEEEEECCS
T ss_pred             ECCcccccCCCCCCCCccccCCCEEEeecCCCccccccceEEEECCC
Confidence            9999  6899999999986522   2 2221   2345667777654

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.48  E-value=2.5e-13  Score=118.23  Aligned_cols=138  Identities=20%  Similarity=0.192  Sum_probs=87.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC-cEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK-KVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK  194 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~  194 (296)
                      +||+|||||++|+++|..|++.|+ +|+|+|  + .      ..||.|.+..++.                 ...+++. 
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie--~-~------~~gg~~~~~~~~~-----------------~~~~~~~-   54 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFE--K-G------MPGGQITGSSEIE-----------------NYPGVKE-   54 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEEC--S-S------STTCGGGGCSCBC-----------------CSTTCCS-
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEc--C-C------CCCcccccccccc-----------------cCCCCcc-
Confidence            699999999999999999999999 999999  4 2      5678775543221                 0111111 


Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEE--eCC--EEEE-cceeEEEEeCeEEEcCCCCCCCCCCC
Q psy7665         195 KSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFV--DKH--RVKF-AGEERTVSAQNFIIAVGGRPTYPDIP  269 (296)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~--~v~v-~g~~~~~~a~~vV~AtG~~p~~p~i~  269 (296)
                       .++...+..++           ...+.+.+++++..+....  ...  .+.+ ++  ..+.+|+||+|||++|..|++|
T Consensus        55 -~~~~~~~~~~l-----------~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g--~~~~~~~vv~AtG~~~~~~~~~  120 (311)
T 2q0l_A           55 -VVSGLDFMQPW-----------QEQCFRFGLKHEMTAVQRVSKKDSHFVILAEDG--KTFEAKSVIIATGGSPKRTGIK  120 (311)
T ss_dssp             -CBCHHHHHHHH-----------HHHHHTTSCEEECSCEEEEEEETTEEEEEETTS--CEEEEEEEEECCCEEECCCCCB
T ss_pred             -cCCHHHHHHHH-----------HHHHHHcCCEEEEEEEEEEEEcCCEEEEEEcCC--CEEECCEEEECCCCCCCCCCCC
Confidence             22333333322           2334556888876554322  233  4444 44  5789999999999999999999


Q ss_pred             CCccc----eeec---ccCCCCCCcEEEeecc
Q psy7665         270 GARLL----RTLS---LLSGVDPPTLIFLEHI  294 (296)
Q Consensus       270 G~~~~----~~~s---~~~~~~~~~~~~~~~~  294 (296)
                      |.+++    +...   .......+++++++.+
T Consensus       121 g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G  152 (311)
T 2q0l_A          121 GESEYWGKGVSTCATCDGFFYKNKEVAVLGGG  152 (311)
T ss_dssp             THHHHBTTTEESCHHHHGGGGTTSEEEEECCS
T ss_pred             ChhhccCCcEEEeecCChhhcCCCEEEEECCC
Confidence            97643    2111   1112334667777643

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.48  E-value=5.1e-14  Score=132.27  Aligned_cols=158  Identities=16%  Similarity=0.245  Sum_probs=89.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhh-----HHHhhcccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLL-----NEEATTSDN  188 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~-----~~~~~~~~~  188 (296)
                      ..+||+|||||++|+.+|.+|++.|.+|+|+|  +.+      .+||+|.. .++|..........     ....  ...
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE--~~~------~~GG~w~~-~~~pg~~~d~~~~~~~~~f~~~~--~~~   83 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIE--TAG------DVGGVWYW-NRYPGARCDIESIEYCYSFSEEV--LQE   83 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEEC--SSS------SSCTHHHH-CCCTTCBCSSCTTTSSCCSCHHH--HHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEe--CCC------CCCCcccc-cCCCceeecccccccccccChhh--hhc
Confidence            46799999999999999999999999999999  666      78998843 23442111000000     0000  000


Q ss_pred             cCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcc-eE---EEEeC---CEEEE-cceeEEEEeCeEEEcCC
Q psy7665         189 FGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA-KA---VFVDK---HRVKF-AGEERTVSAQNFIIAVG  260 (296)
Q Consensus       189 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~---~~~~~---~~v~v-~g~~~~~~a~~vV~AtG  260 (296)
                      +.+.. ...+..++..++..+.+.+.         .+.++..+ ++   ...+.   +.|++ +|  .++.||+||+|+|
T Consensus        84 ~~~~~-~~~~~~~i~~yl~~~~~~~~---------l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G--~~~~ad~vV~AtG  151 (542)
T 1w4x_A           84 WNWTE-RYASQPEILRYINFVADKFD---------LRSGITFHTTVTAAAFDEATNTWTVDTNHG--DRIRARYLIMASG  151 (542)
T ss_dssp             CCCCB-SSCBHHHHHHHHHHHHHHTT---------GGGGEECSCCEEEEEEETTTTEEEEEETTC--CEEEEEEEEECCC
T ss_pred             cCccc-ccCCHHHHHHHHHHHHHHcC---------CCceEEcCcEEEEEEEcCCCCeEEEEECCC--CEEEeCEEEECcC
Confidence            11111 03344455555444433331         01233322 11   12222   35555 45  4689999999999


Q ss_pred             --CCCCCCCCCCCccce----eecccC----CCCCCcEEEeecc
Q psy7665         261 --GRPTYPDIPGARLLR----TLSLLS----GVDPPTLIFLEHI  294 (296)
Q Consensus       261 --~~p~~p~i~G~~~~~----~~s~~~----~~~~~~~~~~~~~  294 (296)
                        +.|..|++||.+.+.    .++.|.    ...++++++|+.+
T Consensus       152 ~~s~p~~p~i~G~~~f~G~~~hs~~~~~~~~~~~gk~V~VIG~G  195 (542)
T 1w4x_A          152 QLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTG  195 (542)
T ss_dssp             SCCCCCCCCCTTGGGCCSEEEEGGGCCSSCCCCBTCEEEEECCS
T ss_pred             CCCCCCCCCCCCcccCCCceEECCCCCCchhccCCCEEEEECCC
Confidence              578889999987553    233332    1134567777643

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.47  E-value=1.1e-13  Score=121.66  Aligned_cols=147  Identities=17%  Similarity=0.196  Sum_probs=90.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..+||+|||||++|+++|.+|+++|++|+|+|  +.+  ...+..||.|.......                 .+.+++.
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie--~~~--~~~~~~gg~~~~~~~~~-----------------~~~~~~~   79 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYE--GMM--ANGIAAGGQLTTTTEIE-----------------NFPGFPD   79 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEEC--CSS--BTTBCTTCGGGGSSEEC-----------------CSTTCTT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEe--cCC--CCCCCcCcccccchhhc-----------------ccCCCcc
Confidence            56899999999999999999999999999999  422  12226788764432110                 0011111


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEE--eCCEEEE--c--ceeEEEEeCeEEEcCCCCCCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFV--DKHRVKF--A--GEERTVSAQNFIIAVGGRPTYPD  267 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~v~v--~--g~~~~~~a~~vV~AtG~~p~~p~  267 (296)
                        ......+.           ..+...+++.+++++.++....  ..+.+.+  .  +....+.+|+||+|+|++|..|+
T Consensus        80 --~~~~~~~~-----------~~~~~~~~~~gv~i~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~~  146 (338)
T 3itj_A           80 --GLTGSELM-----------DRMREQSTKFGTEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKRMH  146 (338)
T ss_dssp             --CEEHHHHH-----------HHHHHHHHHTTCEEECSCEEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEECCCC
T ss_pred             --cCCHHHHH-----------HHHHHHHHHcCCEEEEeEEEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcCCCC
Confidence              11222222           2234445666899887764333  2233443  1  22356899999999999999999


Q ss_pred             CCCCccceeeccc---------CCCCCCcEEEeecc
Q psy7665         268 IPGARLLRTLSLL---------SGVDPPTLIFLEHI  294 (296)
Q Consensus       268 i~G~~~~~~~s~~---------~~~~~~~~~~~~~~  294 (296)
                      +||.+.+....++         .....++.++++.+
T Consensus       147 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G  182 (338)
T 3itj_A          147 LPGEETYWQKGISACAVCDGAVPIFRNKPLAVIGGG  182 (338)
T ss_dssp             CTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEECSS
T ss_pred             CCCchhccCccEEEchhcccchhhcCCCEEEEECCC
Confidence            9997643322211         13345667777643

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.47  E-value=4.2e-13  Score=117.05  Aligned_cols=138  Identities=16%  Similarity=0.232  Sum_probs=85.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      +.+||+|||||++|+++|.+|+++|++|+|+|  +        .+||.|.+....                 ....+++ 
T Consensus        14 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie--~--------~~gg~~~~~~~~-----------------~~~~~~~-   65 (323)
T 3f8d_A           14 EKFDVIIVGLGPAAYGAALYSARYMLKTLVIG--E--------TPGGQLTEAGIV-----------------DDYLGLI-   65 (323)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEE--S--------STTGGGGGCCEE-----------------CCSTTST-
T ss_pred             CccCEEEECccHHHHHHHHHHHHCCCcEEEEe--c--------cCCCeecccccc-----------------cccCCCC-
Confidence            45799999999999999999999999999999  3        246655432111                 0001111 


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEe----CCEEEE-cceeEEEEeCeEEEcCCCCCCCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVD----KHRVKF-AGEERTVSAQNFIIAVGGRPTYPDI  268 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~i  268 (296)
                        ......+.           ..+...+++.+++++..+....+    .+.+.+ ++  ..+.+|+||+|||+.|..|++
T Consensus        66 --~~~~~~~~-----------~~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g--~~~~~d~lvlAtG~~~~~~~i  130 (323)
T 3f8d_A           66 --EIQASDMI-----------KVFNKHIEKYEVPVLLDIVEKIENRGDEFVVKTKRK--GEFKADSVILGIGVKRRKLGV  130 (323)
T ss_dssp             --TEEHHHHH-----------HHHHHHHHTTTCCEEESCEEEEEEC--CEEEEESSS--CEEEEEEEEECCCCEECCCCC
T ss_pred             --CCCHHHHH-----------HHHHHHHHHcCCEEEEEEEEEEEecCCEEEEEECCC--CEEEcCEEEECcCCCCccCCC
Confidence              11122222           22334455568888665543322    223444 44  578999999999999999999


Q ss_pred             CCCccceeec-------ccCCCCCCcEEEeecc
Q psy7665         269 PGARLLRTLS-------LLSGVDPPTLIFLEHI  294 (296)
Q Consensus       269 ~G~~~~~~~s-------~~~~~~~~~~~~~~~~  294 (296)
                      ||.+.+....       ......++++++++.+
T Consensus       131 ~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G  163 (323)
T 3f8d_A          131 PGEQEFAGRGISYCSVADAPLFKNRVVAVIGGG  163 (323)
T ss_dssp             TTTTTTBTTTEESCHHHHGGGGTTCEEEEECCS
T ss_pred             CchhhhcCCceEEeccCCHhHcCCCEEEEECCC
Confidence            9987532211       1123345667777643

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.46  E-value=3.8e-13  Score=118.52  Aligned_cols=140  Identities=22%  Similarity=0.231  Sum_probs=88.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..+||+|||||++|+++|.+|++.|++|+|+|  +.       ..||.|.......                 ...+++.
T Consensus        13 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie--~~-------~~gg~~~~~~~~~-----------------~~~~~~~   66 (335)
T 2a87_A           13 PVRDVIVIGSGPAGYTAALYAARAQLAPLVFE--GT-------SFGGALMTTTDVE-----------------NYPGFRN   66 (335)
T ss_dssp             CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEC--CS-------SCSCGGGSCSCBC-----------------CSTTCTT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEe--cC-------CCCCceeccchhh-----------------hcCCCCC
Confidence            45799999999999999999999999999999  32       5677664331110                 0011110


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEe---CCEE-EE-cceeEEEEeCeEEEcCCCCCCCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVD---KHRV-KF-AGEERTVSAQNFIIAVGGRPTYPDI  268 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~v-~v-~g~~~~~~a~~vV~AtG~~p~~p~i  268 (296)
                        .+....+..+           +...+++.+++++.++....+   .+.+ .+ ++  ..+.||+||+|||++|..|++
T Consensus        67 --~~~~~~~~~~-----------l~~~~~~~~v~~~~~~v~~i~~~~~~~v~~~~~g--~~~~~d~lviAtG~~~~~~~i  131 (335)
T 2a87_A           67 --GITGPELMDE-----------MREQALRFGADLRMEDVESVSLHGPLKSVVTADG--QTHRARAVILAMGAAARYLQV  131 (335)
T ss_dssp             --CBCHHHHHHH-----------HHHHHHHTTCEEECCCEEEEECSSSSEEEEETTS--CEEEEEEEEECCCEEECCCCC
T ss_pred             --CCCHHHHHHH-----------HHHHHHHcCCEEEEeeEEEEEeCCcEEEEEeCCC--CEEEeCEEEECCCCCccCCCC
Confidence              1223333222           233345568888877643332   2456 55 44  578999999999999999999


Q ss_pred             CCCccce---eec----ccCCCCCCcEEEeecc
Q psy7665         269 PGARLLR---TLS----LLSGVDPPTLIFLEHI  294 (296)
Q Consensus       269 ~G~~~~~---~~s----~~~~~~~~~~~~~~~~  294 (296)
                      ||.+.+.   +.+    ......+++++|++.+
T Consensus       132 ~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G  164 (335)
T 2a87_A          132 PGEQELLGRGVSSCATCDGFFFRDQDIAVIGGG  164 (335)
T ss_dssp             THHHHTBTTTEESCHHHHGGGGTTCEEEEECSS
T ss_pred             CchHhccCCceEEeeccchhhcCCCEEEEECCC
Confidence            9976432   111    1112346777777653

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.46  E-value=3.6e-13  Score=119.09  Aligned_cols=151  Identities=18%  Similarity=0.175  Sum_probs=88.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK  194 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~  194 (296)
                      .+||+|||||++|+++|.+|+++|++|+|+|  +.+      .+||.|.+.  +|...+....      ......++...
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie--~~~------~~gg~~~~~--~~~~~~~~~~------~~~~~~~~~~~   66 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILD--AEA------SPGGAWQHA--WHSLHLFSPA------GWSSIPGWPMP   66 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCCEEEEC--CSS------SSSGGGGGS--CTTCBCSSCG------GGSCCSSSCCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEE--CCC------CCCCcccCC--CCCcEecCch------hhhhCCCCCCC
Confidence            4799999999999999999999999999999  666      778887542  2211000000      00011111111


Q ss_pred             c----cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcc-eEEE--EeCCEEE-E--cceeEEEEeCeEEEcCCC--C
Q psy7665         195 K----SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA-KAVF--VDKHRVK-F--AGEERTVSAQNFIIAVGG--R  262 (296)
Q Consensus       195 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~--~~~~~v~-v--~g~~~~~~a~~vV~AtG~--~  262 (296)
                      .    ......+..+           +...+++.+++++.+ ++..  .....+. +  ++  ..+.||+||+|||.  +
T Consensus        67 ~~~~~~~~~~~~~~~-----------l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~--g~~~~d~vV~AtG~~~~  133 (357)
T 4a9w_A           67 ASQGPYPARAEVLAY-----------LAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDG--RQWLARAVISATGTWGE  133 (357)
T ss_dssp             CCSSSSCBHHHHHHH-----------HHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTS--CEEEEEEEEECCCSGGG
T ss_pred             CCccCCCCHHHHHHH-----------HHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCC--CEEEeCEEEECCCCCCC
Confidence            1    2222233322           334445568888665 3222  2344444 4  44  37899999999995  7


Q ss_pred             CCCCCCCCCccce---eec-ccC---CCCCCcEEEeecc
Q psy7665         263 PTYPDIPGARLLR---TLS-LLS---GVDPPTLIFLEHI  294 (296)
Q Consensus       263 p~~p~i~G~~~~~---~~s-~~~---~~~~~~~~~~~~~  294 (296)
                      |..|++||.+++.   .++ .+.   ....+++++++.+
T Consensus       134 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G  172 (357)
T 4a9w_A          134 AYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGG  172 (357)
T ss_dssp             BCCCCCTTGGGCCSEEEEGGGCCCSGGGTTSEEEEECCS
T ss_pred             CCCCCCCCccccCCcEEEeccCCChhhcCCCEEEEECCC
Confidence            7789999987542   222 111   1234567777653

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.46  E-value=8.1e-13  Score=115.52  Aligned_cols=118  Identities=21%  Similarity=0.282  Sum_probs=78.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..+||+|||||++|+++|.+|++.|++|+|+|  + .      ..||.|.+...+..                 ..++. 
T Consensus        15 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie--~-~------~~gg~~~~~~~~~~-----------------~~~~~-   67 (319)
T 3cty_A           15 RDFDVVIVGAGAAGFSAAVYAARSGFSVAILD--K-A------VAGGLTAEAPLVEN-----------------YLGFK-   67 (319)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEE--S-S------STTGGGGGCSCBCC-----------------BTTBS-
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEe--C-C------CCCccccccchhhh-----------------cCCCc-
Confidence            45799999999999999999999999999999  4 3      56777654432210                 01110 


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEE--eCC--EEEEcceeEEEEeCeEEEcCCCCCCCCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFV--DKH--RVKFAGEERTVSAQNFIIAVGGRPTYPDIP  269 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~--~v~v~g~~~~~~a~~vV~AtG~~p~~p~i~  269 (296)
                        .+....+..           .+...+++.+++++.++....  ...  .+.+++  ..+.+|+||+|+|++|..|++|
T Consensus        68 --~~~~~~~~~-----------~~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~--~~~~~~~li~AtG~~~~~~~i~  132 (319)
T 3cty_A           68 --SIVGSELAK-----------LFADHAANYAKIREGVEVRSIKKTQGGFDIETND--DTYHAKYVIITTGTTHKHLGVK  132 (319)
T ss_dssp             --SBCHHHHHH-----------HHHHHHHTTSEEEETCCEEEEEEETTEEEEEESS--SEEEEEEEEECCCEEECCCCCB
T ss_pred             --ccCHHHHHH-----------HHHHHHHHcCCEEEEeeEEEEEEeCCEEEEEECC--CEEEeCEEEECCCCCcccCCCC
Confidence              122222222           233445566888877554332  233  343344  4689999999999999999999


Q ss_pred             CCcc
Q psy7665         270 GARL  273 (296)
Q Consensus       270 G~~~  273 (296)
                      |.++
T Consensus       133 g~~~  136 (319)
T 3cty_A          133 GESE  136 (319)
T ss_dssp             TTTT
T ss_pred             ChHH
Confidence            8764

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.46  E-value=6e-13  Score=124.40  Aligned_cols=138  Identities=19%  Similarity=0.293  Sum_probs=89.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..+||+||||||+|+++|.+|+++|++|+|+|  +        ..||.|.....++.                 ..+++ 
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie--~--------~~GG~~~~~~~~~~-----------------~~~~~-  262 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMG--E--------RFGGQVLDTVDIEN-----------------YISVP-  262 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEC--S--------STTGGGTTCSCBCC-----------------BTTBS-
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCeEEEEE--C--------CCCCcccccccccc-----------------cCCCC-
Confidence            46899999999999999999999999999999  2        46777654322210                 01111 


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcc-eEEEEe-------CCEEEE-cceeEEEEeCeEEEcCCCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA-KAVFVD-------KHRVKF-AGEERTVSAQNFIIAVGGRPT  264 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~-------~~~v~v-~g~~~~~~a~~vV~AtG~~p~  264 (296)
                        ......+.           ..+...+.+.+++++.+ ++...+       .+.+++ +|  ..+.||+||+|||++|.
T Consensus       263 --~~~~~~l~-----------~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g--~~~~~d~vVlAtG~~~~  327 (521)
T 1hyu_A          263 --KTEGQKLA-----------GALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASG--AVLKARSIIIATGAKWR  327 (521)
T ss_dssp             --SBCHHHHH-----------HHHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTS--CEEEEEEEEECCCEEEC
T ss_pred             --CCCHHHHH-----------HHHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCC--CEEEcCEEEECCCCCcC
Confidence              12222222           22334456679999877 444432       234555 45  57899999999999999


Q ss_pred             CCCCCCCccceeeccc-------CCCCCCcEEEeecc
Q psy7665         265 YPDIPGARLLRTLSLL-------SGVDPPTLIFLEHI  294 (296)
Q Consensus       265 ~p~i~G~~~~~~~s~~-------~~~~~~~~~~~~~~  294 (296)
                      .|++||.+++.....+       ....++++++++++
T Consensus       328 ~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~V~ViGgG  364 (521)
T 1hyu_A          328 NMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGG  364 (521)
T ss_dssp             CCCCTTTTTTTTTTEECCTTCCGGGGBTSEEEEECCS
T ss_pred             CCCCCChhhhcCceEEEeecCchhhcCCCeEEEECCC
Confidence            9999998754222111       11235667777653

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.42  E-value=2.6e-13  Score=122.70  Aligned_cols=142  Identities=20%  Similarity=0.274  Sum_probs=82.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCccccc--CCee--eccCCCchhHHHH----------hhhhH
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGL--GGTC--VNVGCIPKKLFHR----------ASLLN  180 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~--GG~~--~~~~~~p~~~~~~----------~~~~~  180 (296)
                      .+||+|||||++|+++|+.|+++|.+|+|+|  +.+.+|.++..  ||.|  .+.++.|..++..          .....
T Consensus         4 ~~dViIIGgG~aGl~aA~~la~~G~~V~vlE--k~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (401)
T 2gqf_A            4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFD--NGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNW   81 (401)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEC--SSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHhCCCCEEEEe--CCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHH
Confidence            4799999999999999999999999999999  66666666543  5666  4555554432110          00111


Q ss_pred             HHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEE--EE-e----CCEEEE--cceeEEEE
Q psy7665         181 EEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAV--FV-D----KHRVKF--AGEERTVS  251 (296)
Q Consensus       181 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~-~----~~~v~v--~g~~~~~~  251 (296)
                      ....++..+|++.... ++..+...  .....+...+...+++.|++++.++..  +. +    ...+.+  ++  .++.
T Consensus        82 ~~~~~~~~~Gi~~~~~-~~g~~~p~--~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~--g~i~  156 (401)
T 2gqf_A           82 DFISLVAEQGITYHEK-ELGQLFCD--EGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNS--TQWQ  156 (401)
T ss_dssp             HHHHHHHHTTCCEEEC-STTEEEET--TCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETT--EEEE
T ss_pred             HHHHHHHhCCCceEEC-cCCEEccC--CCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECC--CEEE
Confidence            1223333344432210 00000000  011222334455566679999876432  22 3    233444  44  3699


Q ss_pred             eCeEEEcCCCCC
Q psy7665         252 AQNFIIAVGGRP  263 (296)
Q Consensus       252 a~~vV~AtG~~p  263 (296)
                      ||+||+|||+.+
T Consensus       157 ad~VVlAtG~~s  168 (401)
T 2gqf_A          157 CKNLIVATGGLS  168 (401)
T ss_dssp             ESEEEECCCCSS
T ss_pred             CCEEEECCCCcc
Confidence            999999999877

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.42  E-value=1.6e-12  Score=114.28  Aligned_cols=142  Identities=21%  Similarity=0.278  Sum_probs=85.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK  194 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~  194 (296)
                      .+||+|||||++|+++|.+|++.|++|+|||  +.+      .+||.|.+.  +|+..+            ....+++  
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie--~~~------~~gg~~~~~--~~~~~~------------~~~~~~~--   60 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMRGLSFRFVD--PLP------EPGGQLTAL--YPEKYI------------YDVAGFP--   60 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEE--SSS------SSCHHHHHT--CTTSEE------------CCSTTCS--
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEe--CCC------CCCCeeecc--CCCcee------------eccCCCC--
Confidence            5799999999999999999999999999999  665      677876432  221100            0001111  


Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcc-eEEEE--eC--CEEEE-cceeEEEEeCeEEEcCCC---CCCC
Q psy7665         195 KSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA-KAVFV--DK--HRVKF-AGEERTVSAQNFIIAVGG---RPTY  265 (296)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~--~~--~~v~v-~g~~~~~~a~~vV~AtG~---~p~~  265 (296)
                       ......+..           .+...+...+++++.+ ++...  ..  +.+.+ ++  ..+.+|+||+|||+   .|..
T Consensus        61 -~~~~~~~~~-----------~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g--~~~~~~~lv~AtG~~~~~p~~  126 (335)
T 2zbw_A           61 -KVYAKDLVK-----------GLVEQVAPFNPVYSLGERAETLEREGDLFKVTTSQG--NAYTAKAVIIAAGVGAFEPRR  126 (335)
T ss_dssp             -SEEHHHHHH-----------HHHHHHGGGCCEEEESCCEEEEEEETTEEEEEETTS--CEEEEEEEEECCTTSEEEECC
T ss_pred             -CCCHHHHHH-----------HHHHHHHHcCCEEEeCCEEEEEEECCCEEEEEECCC--CEEEeCEEEECCCCCCCCCCC
Confidence             112222222           2233445557777543 33222  22  23444 34  56899999999998   5778


Q ss_pred             CCCCCCcccee----ecccCC--CCCCcEEEeecc
Q psy7665         266 PDIPGARLLRT----LSLLSG--VDPPTLIFLEHI  294 (296)
Q Consensus       266 p~i~G~~~~~~----~s~~~~--~~~~~~~~~~~~  294 (296)
                      |++||.+.+..    .++...  ..++++++++.+
T Consensus       127 ~~i~g~~~~~~~~~~~~~~~~~~~~~~~v~viG~G  161 (335)
T 2zbw_A          127 IGAPGEREFEGRGVYYAVKSKAEFQGKRVLIVGGG  161 (335)
T ss_dssp             CCCTTTTTTBTTTEESSCSCGGGGTTCEEEEECSS
T ss_pred             CCCCChhhccCcEEEEecCchhhcCCCEEEEECCC
Confidence            88998765432    222221  235667777653

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.42  E-value=6.7e-13  Score=115.93  Aligned_cols=140  Identities=17%  Similarity=0.156  Sum_probs=87.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..+||+|||||++|+++|.+|++.|++|+|+|  +.       ..||.|.......                 ...+++.
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie--~~-------~~gg~~~~~~~~~-----------------~~~~~~~   57 (320)
T 1trb_A            4 KHSKLLILGSGPAGYTAAVYAARANLQPVLIT--GM-------EKGGQLTTTTEVE-----------------NWPGDPN   57 (320)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEEC--CS-------STTGGGGGCSBCC-----------------CSTTCCS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEc--cC-------CCCceEecchhhh-----------------hCCCCCC
Confidence            35799999999999999999999999999999  32       5677654321110                 0111110


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEe--CCEEE-E-cceeEEEEeCeEEEcCCCCCCCCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVD--KHRVK-F-AGEERTVSAQNFIIAVGGRPTYPDIP  269 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~v~-v-~g~~~~~~a~~vV~AtG~~p~~p~i~  269 (296)
                        .+....+..+           +...+.+.+++++.++....+  ...++ . ++  ..+.+|+||+|||++|..|++|
T Consensus        58 --~~~~~~~~~~-----------~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~--~~~~~~~lv~AtG~~~~~~~~~  122 (320)
T 1trb_A           58 --DLTGPLLMER-----------MHEHATKFETEIIFDHINKVDLQNRPFRLNGDN--GEYTCDALIIATGASARYLGLP  122 (320)
T ss_dssp             --SCBHHHHHHH-----------HHHHHHHTTCEEECCCEEEEECSSSSEEEEESS--CEEEEEEEEECCCEEECCCCCH
T ss_pred             --CCCHHHHHHH-----------HHHHHHHCCCEEEEeeeeEEEecCCEEEEEeCC--CEEEcCEEEECCCCCcCCCCCC
Confidence              1222222222           233445668998877654332  22233 3 44  5689999999999999999999


Q ss_pred             CCccce---eec----ccCCCCCCcEEEeecc
Q psy7665         270 GARLLR---TLS----LLSGVDPPTLIFLEHI  294 (296)
Q Consensus       270 G~~~~~---~~s----~~~~~~~~~~~~~~~~  294 (296)
                      |.+.+.   +.+    ......+++++|++.+
T Consensus       123 g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G  154 (320)
T 1trb_A          123 SEEAFKGRGVSACATSDGFFYRNQKVAVIGGG  154 (320)
T ss_dssp             HHHHTBTTTEESCHHHHGGGGTTSEEEEECSS
T ss_pred             ChHHhCCceeEecccCCccccCCCeEEEECCC
Confidence            875432   111    1112346677777643

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.42  E-value=1.1e-12  Score=115.02  Aligned_cols=123  Identities=23%  Similarity=0.314  Sum_probs=79.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..+||+|||||++|+++|..|++.|++|+|+|  +.+      .+||.|.+  ++|...            .....+++ 
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie--~~~------~~gG~~~~--~~~~~~------------~~~~~~~~-   62 (332)
T 3lzw_A            6 KVYDITIIGGGPVGLFTAFYGGMRQASVKIIE--SLP------QLGGQLSA--LYPEKY------------IYDVAGFP-   62 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEC--SSS------SSCHHHHH--HCTTSE------------ECCSTTCS-
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCCEEEEE--cCC------CCCceehh--cCCCce------------EeccCCCC-
Confidence            34799999999999999999999999999999  666      67887632  111100            00011111 


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcc-eEEEE--eC---CEEEEcceeEEEEeCeEEEcCCC---CCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA-KAVFV--DK---HRVKFAGEERTVSAQNFIIAVGG---RPT  264 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~--~~---~~v~v~g~~~~~~a~~vV~AtG~---~p~  264 (296)
                        ......+           ...+...+++.+++++.+ ++...  ..   +.+.+++  ..+.+|+||+|||+   .|.
T Consensus        63 --~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~--g~~~~d~vVlAtG~~~~~p~  127 (332)
T 3lzw_A           63 --KIRAQEL-----------INNLKEQMAKFDQTICLEQAVESVEKQADGVFKLVTNE--ETHYSKTVIITAGNGAFKPR  127 (332)
T ss_dssp             --SEEHHHH-----------HHHHHHHHTTSCCEEECSCCEEEEEECTTSCEEEEESS--EEEEEEEEEECCTTSCCEEC
T ss_pred             --CCCHHHH-----------HHHHHHHHHHhCCcEEccCEEEEEEECCCCcEEEEECC--CEEEeCEEEECCCCCcCCCC
Confidence              1122222           223344455568888753 33222  22   2455544  23899999999999   889


Q ss_pred             CCCCCCCccc
Q psy7665         265 YPDIPGARLL  274 (296)
Q Consensus       265 ~p~i~G~~~~  274 (296)
                      .|++||.+.+
T Consensus       128 ~~~~~g~~~~  137 (332)
T 3lzw_A          128 KLELENAEQY  137 (332)
T ss_dssp             CCCCTTGGGG
T ss_pred             CCCCCChhhc
Confidence            9999998763

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.42  E-value=1e-12  Score=115.45  Aligned_cols=124  Identities=21%  Similarity=0.273  Sum_probs=78.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..+||+|||||++|+++|++|++.|++|+|+|  +..  +.....||.|.....+.                 ...+++.
T Consensus         7 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie--~~~--~~~~~~gg~~~~~~~~~-----------------~~~~~~~   65 (333)
T 1vdc_A            7 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFE--GWM--ANDIAPGGQLTTTTDVE-----------------NFPGFPE   65 (333)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEEC--CSS--BTTBCTTCGGGGCSEEC-----------------CSTTCTT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEe--ccC--ccccCCCceeeeccccc-----------------cCCCCcc
Confidence            35799999999999999999999999999999  410  00115667553321100                 0011110


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEe--CC--EEEEcceeEEEEeCeEEEcCCCCCCCCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVD--KH--RVKFAGEERTVSAQNFIIAVGGRPTYPDIP  269 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~--~v~v~g~~~~~~a~~vV~AtG~~p~~p~i~  269 (296)
                        .+....+.           ..+...+.+.+++++.++....+  ..  .+++++  ..+.+|+||+|+|++|..|++|
T Consensus        66 --~~~~~~~~-----------~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~v~~~~--~~~~~~~vv~A~G~~~~~~~~~  130 (333)
T 1vdc_A           66 --GILGVELT-----------DKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDS--KAILADAVILAIGAVAKRLSFV  130 (333)
T ss_dssp             --CEEHHHHH-----------HHHHHHHHHTTCEEECCCCCEEECSSSSEEEECSS--EEEEEEEEEECCCEEECCCCCB
T ss_pred             --CCCHHHHH-----------HHHHHHHHHCCCEEEEeEEEEEEEcCCEEEEEECC--cEEEcCEEEECCCCCcCCCCCC
Confidence              11222222           22334455668998876543222  22  343345  6799999999999999999999


Q ss_pred             CCcc
Q psy7665         270 GARL  273 (296)
Q Consensus       270 G~~~  273 (296)
                      |.+.
T Consensus       131 g~~~  134 (333)
T 1vdc_A          131 GSGE  134 (333)
T ss_dssp             TCSS
T ss_pred             Cccc
Confidence            9765

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.39  E-value=3.7e-12  Score=113.27  Aligned_cols=142  Identities=22%  Similarity=0.243  Sum_probs=84.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK  194 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~  194 (296)
                      .+||+|||||++|+++|.+|++.|++|+|||  +.+      .+||.|.+.  .|...            .+...+++  
T Consensus        14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie--~~~------~~gg~~~~~--~~~~~------------~~~~~~~~--   69 (360)
T 3ab1_A           14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIE--SMP------QLGGQLAAL--YPEKH------------IYDVAGFP--   69 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEC--SSS------SSCHHHHHT--CTTSE------------ECCSTTCS--
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEe--cCC------CCCCccccc--CCCcc------------cccCCCCC--
Confidence            5799999999999999999999999999999  655      677776432  11100            00001111  


Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcc-eEEEE--eC---CEEEE-cceeEEEEeCeEEEcCCC---CCC
Q psy7665         195 KSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA-KAVFV--DK---HRVKF-AGEERTVSAQNFIIAVGG---RPT  264 (296)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~--~~---~~v~v-~g~~~~~~a~~vV~AtG~---~p~  264 (296)
                       ......+..           .+...+...+++++.+ ++...  ..   +.+++ ++  ..+.||+||+|+|+   .|.
T Consensus        70 -~~~~~~~~~-----------~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g--~~~~~~~li~AtG~~~~~~~  135 (360)
T 3ab1_A           70 -EVPAIDLVE-----------SLWAQAERYNPDVVLNETVTKYTKLDDGTFETRTNTG--NVYRSRAVLIAAGLGAFEPR  135 (360)
T ss_dssp             -SEEHHHHHH-----------HHHHHHHTTCCEEECSCCEEEEEECTTSCEEEEETTS--CEEEEEEEEECCTTCSCCBC
T ss_pred             -CCCHHHHHH-----------HHHHHHHHhCCEEEcCCEEEEEEECCCceEEEEECCC--cEEEeeEEEEccCCCcCCCC
Confidence             112222222           2334455567887654 33222  11   24444 44  56899999999998   566


Q ss_pred             CCCCCC-Ccccee----ecccCC--CCCCcEEEeecc
Q psy7665         265 YPDIPG-ARLLRT----LSLLSG--VDPPTLIFLEHI  294 (296)
Q Consensus       265 ~p~i~G-~~~~~~----~s~~~~--~~~~~~~~~~~~  294 (296)
                      .|++|| .+++..    .++...  ..+++++|++.+
T Consensus       136 ~~~i~g~~~~~~~~~v~~~~~~~~~~~~~~vvVvG~G  172 (360)
T 3ab1_A          136 KLPQLGNIDHLTGSSVYYAVKSVEDFKGKRVVIVGGG  172 (360)
T ss_dssp             CCGGGCCCTTTBTTTEESSCSCGGGGTTCEEEEECSS
T ss_pred             CCCCCCchhhCcCceEEEecCCHHHcCCCcEEEECCC
Confidence            777888 554322    222111  235667777653

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=99.37  E-value=2.8e-12  Score=117.64  Aligned_cols=136  Identities=22%  Similarity=0.281  Sum_probs=80.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhC--CCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASM--NKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      +||+|||||++|+++|.+|++.  |.+|+|||  +.+      ..++..   ..+|...                .+   
T Consensus         4 ~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie--~~~------~~~~~~---~~~p~~~----------------~~---   53 (449)
T 3kd9_A            4 KKVVIIGGGAAGMSAASRVKRLKPEWDVKVFE--ATE------WVSHAP---CGIPYVV----------------EG---   53 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEEC--SSS------CCC----------------------------------
T ss_pred             CcEEEECCcHHHHHHHHHHHHhCcCCCEEEEE--CCC------ccccCC---cCCcccc----------------CC---
Confidence            5999999999999999999998  78999999  444      222210   0011000                00   


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHH-HHCCcEEEcc-eEEEEeCCEEEE--cceeEEEEeCeEEEcCCCCCCCCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKEL-EKNKIDYFNA-KAVFVDKHRVKF--AGEERTVSAQNFIIAVGGRPTYPDIP  269 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~-~~~~~~~~~v~v--~g~~~~~~a~~vV~AtG~~p~~p~i~  269 (296)
                        ....           +.+.......+ ++.+++++.+ ++...+.....+  +++...+.+|+||+|||++|+.|++|
T Consensus        54 --~~~~-----------~~~~~~~~~~~~~~~gi~v~~~~~v~~i~~~~~~v~~~~g~~~~~~d~lviAtG~~p~~p~i~  120 (449)
T 3kd9_A           54 --LSTP-----------DKLMYYPPEVFIKKRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQVPAIE  120 (449)
T ss_dssp             -------------------------CTHHHHTTCEEETTCEEEEECSSEEEEECSSSEEEEECSEEEECCCEEECCCSCB
T ss_pred             --CCCH-----------HHhhhcCHHHHHHhcCcEEEecCEEEEEecCCCEEEECCceEEEEcCEEEECCCCCCCCCCCC
Confidence              0000           00111111222 4568999887 444455444444  44345789999999999999999999


Q ss_pred             CCcc-ceeec--c---------cCCCCCCcEEEeecc
Q psy7665         270 GARL-LRTLS--L---------LSGVDPPTLIFLEHI  294 (296)
Q Consensus       270 G~~~-~~~~s--~---------~~~~~~~~~~~~~~~  294 (296)
                      |.+. .+.+.  .         .....+++++|++++
T Consensus       121 G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vvViGgG  157 (449)
T 3kd9_A          121 GVNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGG  157 (449)
T ss_dssp             TTTSTTEECSCSTHHHHHHHHHHSSSCCCEEEEECCS
T ss_pred             CCCCCCEEEeCCHHHHHHHHHHHHhcCCCeEEEECCC
Confidence            9863 23322  0         111145678887654

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=99.33  E-value=7.4e-12  Score=114.96  Aligned_cols=137  Identities=18%  Similarity=0.201  Sum_probs=81.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhC--CCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASM--NKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      +||+|||||++|+++|.+|+++  |.+|+|||  +.+      .+|.       .|.........   .           
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie--~~~------~~g~-------~~~~~~~~~~~---~-----------   53 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLID--KQA------TVGY-------LSGGLSAYFNH---T-----------   53 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEEC--SSS------CCSS-------CCC-----------------------
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEE--CCC------CCcc-------cCccchhhhcC---C-----------
Confidence            4899999999999999999998  89999999  554      2221       11100000000   0           


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcc-eEEEE--eCCEEEE--cceeEEEEeCeEEEcCCCCCCCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA-KAVFV--DKHRVKF--AGEERTVSAQNFIIAVGGRPTYPDI  268 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~--~~~~v~v--~g~~~~~~a~~vV~AtG~~p~~p~i  268 (296)
                        ..+           .+.+.......+.+.+++++.+ ++...  ....+.+  .+....+.+|++|+|||++|..|++
T Consensus        54 --~~~-----------~~~~~~~~~~~~~~~gi~~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~p~i  120 (452)
T 3oc4_A           54 --INE-----------LHEARYITEEELRRQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQI  120 (452)
T ss_dssp             --------------------CCCCHHHHHHTTEEEECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCCCBCCCCC
T ss_pred             --CCC-----------HHHhhcCCHHHHHHCCCEEEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCcccCCCCC
Confidence              000           0000011123345668888654 33333  2345555  3334679999999999999999999


Q ss_pred             CCCc-cceeecc--c-------CCCCCCcEEEeecc
Q psy7665         269 PGAR-LLRTLSL--L-------SGVDPPTLIFLEHI  294 (296)
Q Consensus       269 ~G~~-~~~~~s~--~-------~~~~~~~~~~~~~~  294 (296)
                      ||.+ ..++++.  .       ....++++++++.+
T Consensus       121 ~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG  156 (452)
T 3oc4_A          121 RGSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAG  156 (452)
T ss_dssp             BTTTCTTEEEGGGCC----CCHHHHTCSEEEEECCS
T ss_pred             CCCCCCCEEEeCCHHHHHHHHHHHhcCCEEEEECCC
Confidence            9987 3344431  1       12356778887654

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.33  E-value=3.4e-12  Score=122.79  Aligned_cols=126  Identities=22%  Similarity=0.279  Sum_probs=84.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..+||+|||||++|+++|..|++.|++|+|+|  +.+      .+||++....++|.                       
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie--~~~------~~gg~~~~~~~~~~-----------------------  420 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFD--AHS------EIGGQFNIAKQIPG-----------------------  420 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEE--SSS------SSCTTHHHHTTSTT-----------------------
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEe--CCC------CCCCeeeccccCCC-----------------------
Confidence            45799999999999999999999999999999  666      67887654444332                       


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEE-EeCeEEEcCCCCCCCCCCCCCc
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTV-SAQNFIIAVGGRPTYPDIPGAR  272 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~-~a~~vV~AtG~~p~~p~i~G~~  272 (296)
                        ...+.....           .+...+++.+++++.++.       +.  .  ..+ .+|+||+|||++|+.|++||.+
T Consensus       421 --~~~~~~~~~-----------~~~~~~~~~gv~~~~~~~-------v~--~--~~~~~~d~lviAtG~~p~~~~i~G~~  476 (671)
T 1ps9_A          421 --KEEFYETLR-----------YYRRMIEVTGVTLKLNHT-------VT--A--DQLQAFDETILASGIVPRTPPIDGID  476 (671)
T ss_dssp             --CTTHHHHHH-----------HHHHHHHHHTCEEEESCC-------CC--S--SSSCCSSEEEECCCEEECCCCCBTTT
T ss_pred             --HHHHHHHHH-----------HHHHHHHHcCCEEEeCcE-------ec--H--HHhhcCCEEEEccCCCcCCCCCCCCC
Confidence              111111111           123344556888876542       11  1  123 7999999999999999999986


Q ss_pred             c-ceeec--ccC--CCCCCcEEEeecc
Q psy7665         273 L-LRTLS--LLS--GVDPPTLIFLEHI  294 (296)
Q Consensus       273 ~-~~~~s--~~~--~~~~~~~~~~~~~  294 (296)
                      . .+++.  .+.  ...+++++||+++
T Consensus       477 ~~~v~~~~~~l~~~~~~~~~VvVIGgG  503 (671)
T 1ps9_A          477 HPKVLSYLDVLRDKAPVGNKVAIIGCG  503 (671)
T ss_dssp             STTEEEHHHHHTSCCCCCSEEEEECCH
T ss_pred             CCcEeeHHHHhhCCCCCCCeEEEECCC
Confidence            4 34443  222  2345678887653

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=99.33  E-value=1.4e-12  Score=117.17  Aligned_cols=136  Identities=15%  Similarity=0.168  Sum_probs=83.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--CcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMN--KKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFH  192 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~  192 (296)
                      .+||+|||||++|+++|.+|++.|  .+|+++|  +..        |       |.+++.....             .+.
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie--~~~--------g-------~~~~~~~l~~-------------~~~   53 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMIT--ADD--------G-------RSYSKPMLST-------------GFS   53 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEEC--SSC--------C-------CEECGGGGGG-------------TTT
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEE--CCC--------C-------CccCcccccH-------------HHh
Confidence            479999999999999999999999  4689999  322        2       2221110000             000


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcce-EEEEe--CCEEEEcceeEEEEeCeEEEcCCCCCCCCCCC
Q psy7665         193 MKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK-AVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIP  269 (296)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~--~~~v~v~g~~~~~~a~~vV~AtG~~p~~p~i~  269 (296)
                      .  ......+.          ...+...+++.+++++.+. +...+  .+.+.+++  ..+.+|+||+|||++|..|++|
T Consensus        54 ~--~~~~~~~~----------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~v~~~~--~~~~~d~lviAtG~~p~~p~i~  119 (384)
T 2v3a_A           54 K--NKDADGLA----------MAEPGAMAEQLNARILTHTRVTGIDPGHQRIWIGE--EEVRYRDLVLAWGAEPIRVPVE  119 (384)
T ss_dssp             T--TCCHHHHE----------EECHHHHHHHTTCEEECSCCCCEEEGGGTEEEETT--EEEECSEEEECCCEEECCCCCB
T ss_pred             C--CCCHHHhh----------ccCHHHHHHhCCcEEEeCCEEEEEECCCCEEEECC--cEEECCEEEEeCCCCcCCCCCC
Confidence            0  00111110          0011233456689987643 33333  46777765  4699999999999999999999


Q ss_pred             CCc-cceeecc--c-------CCCCCCcEEEeecc
Q psy7665         270 GAR-LLRTLSL--L-------SGVDPPTLIFLEHI  294 (296)
Q Consensus       270 G~~-~~~~~s~--~-------~~~~~~~~~~~~~~  294 (296)
                      |.+ ..++++.  +       ....++++++++.+
T Consensus       120 g~~~~~v~~~~~~~~~~~~~~~~~~~~~v~ViGgG  154 (384)
T 2v3a_A          120 GDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAG  154 (384)
T ss_dssp             STTTTCEEECSSHHHHHHHHHHHTTCCEEEEECCS
T ss_pred             CcCcCCEEEECCHHHHHHHHHhhccCCeEEEECCC
Confidence            976 4455431  1       12347888888654

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=99.31  E-value=3.4e-12  Score=114.84  Aligned_cols=135  Identities=18%  Similarity=0.180  Sum_probs=82.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ...+|+|||||+||++||..|+..+.+|+|||  +.+      ..+.    ..+.-++.          +.     +   
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie--~~~------~~~y----~~~~l~~~----------l~-----g---   57 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDDITMIN--SEK------YLPY----YRPRLNEI----------IA-----K---   57 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSCEEEEC--SSS------SCCB----CGGGHHHH----------HH-----S---
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEE--CCC------CCCc----ccChhhHH----------Hc-----C---
Confidence            34589999999999999999988899999999  444      2221    00000000          00     0   


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcc-eEEEEe--CCEEEE-cceeEEEEeCeEEEcCCCCCCCCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA-KAVFVD--KHRVKF-AGEERTVSAQNFIIAVGGRPTYPDIP  269 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~i~  269 (296)
                        ..+.           +++.......+++.+++++.+ ++..++  .+.|++ ++  .++.||+||+|||++|+.|++|
T Consensus        58 --~~~~-----------~~l~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g--~~~~yd~lvlAtG~~p~~p~i~  122 (385)
T 3klj_A           58 --NKSI-----------DDILIKKNDWYEKNNIKVITSEFATSIDPNNKLVTLKSG--EKIKYEKLIIASGSIANKIKVP  122 (385)
T ss_dssp             --CCCG-----------GGTBSSCHHHHHHTTCEEECSCCEEEEETTTTEEEETTS--CEEECSEEEECCCEEECCCCCT
T ss_pred             --CCCH-----------HHccCCCHHHHHHCCCEEEeCCEEEEEECCCCEEEECCC--CEEECCEEEEecCCCcCCCCCC
Confidence              0000           000111223345669999876 344333  456777 55  5789999999999999999999


Q ss_pred             CCccceeec--c---cCC----CCCCcEEEeecc
Q psy7665         270 GARLLRTLS--L---LSG----VDPPTLIFLEHI  294 (296)
Q Consensus       270 G~~~~~~~s--~---~~~----~~~~~~~~~~~~  294 (296)
                      |.+ .+.+.  .   ...    ..++++++++.+
T Consensus       123 G~~-~v~~~~~~~d~~~l~~~l~~~~~vvVIGgG  155 (385)
T 3klj_A          123 HAD-EIFSLYSYDDALKIKDECKNKGKAFIIGGG  155 (385)
T ss_dssp             TCS-CEECCSSHHHHHHHHHHHHHHSCEEEECCS
T ss_pred             CCC-CeEEeCCHHHHHHHHHHhhcCCeEEEECCC
Confidence            986 33332  1   111    125677777654

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.30  E-value=1.2e-11  Score=112.40  Aligned_cols=143  Identities=16%  Similarity=0.269  Sum_probs=78.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCccccc--CCeeec--cCCCchhH----------HHHhhhh
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGL--GGTCVN--VGCIPKKL----------FHRASLL  179 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~--GG~~~~--~~~~p~~~----------~~~~~~~  179 (296)
                      ..+||+|||||++|+++|+.|+++|.+|+|+|  +.+.+|.++.+  ||.|..  ..+.+..+          .......
T Consensus        26 ~~~dViIIGgG~AGl~aA~~La~~G~~V~llE--k~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~  103 (417)
T 3v76_A           26 EKQDVVIIGAGAAGMMCAIEAGKRGRRVLVID--HARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRP  103 (417)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEC--SSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEe--CCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCH
Confidence            45799999999999999999999999999999  77766665533  445532  22222211          0011111


Q ss_pred             HHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceE-EE--EeCCEEEE--cceeEEEEeCe
Q psy7665         180 NEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA-VF--VDKHRVKF--AGEERTVSAQN  254 (296)
Q Consensus       180 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~--~~~~~v~v--~g~~~~~~a~~  254 (296)
                      .....++...|+..........+.   ......+...+...+++.|++++.++. ..  .++..+.+  ++  ..+.||.
T Consensus       104 ~~~~~~~~~~Gi~~~~~~~g~~~~---~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~--g~i~ad~  178 (417)
T 3v76_A          104 QDFVALVERHGIGWHEKTLGQLFC---DHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSA--GTVDAAS  178 (417)
T ss_dssp             HHHHHHHHHTTCCEEECSTTEEEE---SSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETT--EEEEESE
T ss_pred             HHHHHHHHHcCCCcEEeeCCEEee---CCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECC--cEEEeeE
Confidence            122222222333221100000000   001122333445556666999987532 21  23344444  44  3799999


Q ss_pred             EEEcCCCCC
Q psy7665         255 FIIAVGGRP  263 (296)
Q Consensus       255 vV~AtG~~p  263 (296)
                      ||+|+|..+
T Consensus       179 VIlAtG~~S  187 (417)
T 3v76_A          179 LVVASGGKS  187 (417)
T ss_dssp             EEECCCCSS
T ss_pred             EEECCCCcc
Confidence            999999876

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=99.29  E-value=4.1e-12  Score=116.64  Aligned_cols=108  Identities=21%  Similarity=0.282  Sum_probs=72.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..+||+||||||+|+++|.+|++.|++|+|||  +.+      .+||.+.+                         +++.
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e--~~~------~~GG~l~~-------------------------gip~  167 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYD--RYD------RMGGLLVY-------------------------GIPG  167 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEC--SSS------SCSTHHHH-------------------------TSCT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEe--ccC------CCCCeeee-------------------------cCCC
Confidence            46799999999999999999999999999999  666      67775321                         1110


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCC-CCCCCCCCCc
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYPDIPGAR  272 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~-p~~p~i~G~~  272 (296)
                      . ... ..+           .......+++.|++++.++..   ...+++++  ..+.+|+||+|||+. |+.+++||.+
T Consensus       168 ~-~~~-~~~-----------~~~~~~~l~~~gv~~~~~~~v---~~~v~~~~--~~~~~d~vvlAtG~~~~~~~~ipG~~  229 (456)
T 2vdc_G          168 F-KLE-KSV-----------VERRVKLLADAGVIYHPNFEV---GRDASLPE--LRRKHVAVLVATGVYKARDIKAPGSG  229 (456)
T ss_dssp             T-TSC-HHH-----------HHHHHHHHHHTTCEEETTCCB---TTTBCHHH--HHSSCSEEEECCCCCEECCTTCSCCT
T ss_pred             c-cCC-HHH-----------HHHHHHHHHHCCcEEEeCCEe---ccEEEhhH--hHhhCCEEEEecCCCCCCCCCCCCCc
Confidence            0 111 111           112234456779998876531   12233322  125699999999995 7778899976

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=99.26  E-value=4.4e-12  Score=116.31  Aligned_cols=137  Identities=18%  Similarity=0.281  Sum_probs=83.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhC--CCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASM--NKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      +||+|||||++|+.+|.+|++.  |.+|+|+|  +.+      ..|.    ..|   ......       .     +.  
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie--~~~------~~~~----~~~---~~~~~~-------~-----~~--   51 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYE--KGD------FISF----LSA---GMQLYL-------E-----GK--   51 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEE--SSS------SSSB----CGG---GHHHHH-------T-----TS--
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEE--CCC------ccCc----ccc---cchhhh-------c-----Cc--
Confidence            3899999999999999999998  99999999  443      2221    111   100000       0     00  


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEE-EE--eCCEEEE-c---ceeEEEEeCeEEEcCCCCCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAV-FV--DKHRVKF-A---GEERTVSAQNFIIAVGGRPTYP  266 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~--~~~~v~v-~---g~~~~~~a~~vV~AtG~~p~~p  266 (296)
                        ..++..+           ...+...+++.+++++.+... ..  +.+.+.+ +   |+..++.||+||+|||++|..|
T Consensus        52 --~~~~~~~-----------~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p  118 (447)
T 1nhp_A           52 --VKDVNSV-----------RYMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFEL  118 (447)
T ss_dssp             --SCCGGGS-----------BSCCHHHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             --cCCHHHh-----------hcCCHHHHHHCCCEEEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcCCC
Confidence              0000000           001122345568998665443 23  3456766 3   4334689999999999999999


Q ss_pred             CCCCCc-cceeecc--c-------CCC--CCCcEEEeecc
Q psy7665         267 DIPGAR-LLRTLSL--L-------SGV--DPPTLIFLEHI  294 (296)
Q Consensus       267 ~i~G~~-~~~~~s~--~-------~~~--~~~~~~~~~~~  294 (296)
                      ++||.+ +.++++.  .       ...  .+++++|++.+
T Consensus       119 ~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvIiG~G  158 (447)
T 1nhp_A          119 DIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSG  158 (447)
T ss_dssp             CSTTTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCS
T ss_pred             CCCCCCCCCeEEECCHHHHHHHHHHhhhcCCCeEEEECCC
Confidence            999986 3344431  0       012  67888888754

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=99.25  E-value=3.2e-11  Score=111.27  Aligned_cols=143  Identities=22%  Similarity=0.263  Sum_probs=74.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhC--CCcEEEEeccCCCCCCcccccCCeeeccCC-CchhHHHHhhhhHHHhhcccccCcc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASM--NKKVALFDFVTPSQHGTVWGLGGTCVNVGC-IPKKLFHRASLLNEEATTSDNFGFH  192 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~g~~  192 (296)
                      +||+|||||++|+++|.+|+++  |.+|+|||  +.+      ..+.    ..| +|...                .+. 
T Consensus         4 ~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie--~~~------~~~~----~~~gl~~~~----------------~g~-   54 (472)
T 3iwa_A            4 KHVVVIGAVALGPKAACRFKRLDPEAHVTMID--QAS------RISY----GGCGIPYYV----------------SGE-   54 (472)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHCTTSEEEEEC--CC--------------------------------------------
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEE--CCC------cccc----cccccchhh----------------cCC-
Confidence            5899999999999999999998  89999999  444      2211    000 11000                000 


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcce-EEEE--eCCEEEE-c---ceeEEEEeCeEEEcCCCCCCC
Q psy7665         193 MKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK-AVFV--DKHRVKF-A---GEERTVSAQNFIIAVGGRPTY  265 (296)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--~~~~v~v-~---g~~~~~~a~~vV~AtG~~p~~  265 (296)
                         ......+...    ...+........+..+++++.+. +...  ....+.+ +   +....+.+|++|+|||++|..
T Consensus        55 ---~~~~~~~~~~----~~~~~~~~~~~~~~~gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~  127 (472)
T 3iwa_A           55 ---VSNIESLQAT----PYNVVRDPEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANR  127 (472)
T ss_dssp             ---------------------------------CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECC
T ss_pred             ---CCchHHhccc----cchhccCHHHHhhhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcCC
Confidence               0000000000    00001111111223578876543 3333  3455665 3   544589999999999999999


Q ss_pred             CCCCCCc-cceeec--c---------cCCCCCCcEEEeecc
Q psy7665         266 PDIPGAR-LLRTLS--L---------LSGVDPPTLIFLEHI  294 (296)
Q Consensus       266 p~i~G~~-~~~~~s--~---------~~~~~~~~~~~~~~~  294 (296)
                      |++||.+ ..+.+.  .         .....+++++|++.+
T Consensus       128 p~i~G~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvViGgG  168 (472)
T 3iwa_A          128 PPVEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGG  168 (472)
T ss_dssp             CSCTTTTSBTEEECCSHHHHHHHHHHCCTTSCSEEEEECCS
T ss_pred             CCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCCCEEEEECCC
Confidence            9999985 333221  0         111347788887654

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.25  E-value=5.6e-11  Score=112.34  Aligned_cols=135  Identities=21%  Similarity=0.257  Sum_probs=75.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcc-------
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTS-------  186 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~-------  186 (296)
                      ..|||+|||||++|++||..|++.|.+|+|+|  +...     .+|.    .+|.|+............+..+       
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIE--k~~~-----~iG~----~~Cnps~ggia~~~lv~ei~algg~~~~~   95 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLT--HNID-----TLGQ----MSCNPAIGGIGKGHLVKEVDALGGLMAKA   95 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEE--SCGG-----GTTC----CSSSSEEESTTHHHHHHHHHHTTCSHHHH
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEEEe--eccc-----cccc----ccccccccchhhHHHHHHHHHhccHHHHH
Confidence            45899999999999999999999999999999  3310     1221    2333322110001111111000       


Q ss_pred             -cccCccccc--------------cCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCcEEEcceEEEE--eCCE---EEE-c
Q psy7665         187 -DNFGFHMKK--------------SFTWKTLVDNVQKYIRNLNNNYEKELEK-NKIDYFNAKAVFV--DKHR---VKF-A  244 (296)
Q Consensus       187 -~~~g~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~--~~~~---v~v-~  244 (296)
                       ...++.+..              ..+..           .+...+...+++ .+++++.+++...  ++..   |.+ +
T Consensus        96 ~d~~gi~f~~l~~~kgpav~~~r~~~Dr~-----------~~~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~t~d  164 (651)
T 3ces_A           96 IDQAGIQFRILNASKGPAVRATRAQADRV-----------LYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQM  164 (651)
T ss_dssp             HHHHEEEEEEESTTSCGGGCEEEEEECHH-----------HHHHHHHHHHHTCTTEEEEECCEEEEEESSSBEEEEEETT
T ss_pred             hhhcccchhhhhcccCcccccchhhCCHH-----------HHHHHHHHHHHhCCCCEEEEEEEEEEEecCCEEEEEEECC
Confidence             000010000              11111           223334455666 5899877665443  3333   334 4


Q ss_pred             ceeEEEEeCeEEEcCCCCCCCCCCCCCc
Q psy7665         245 GEERTVSAQNFIIAVGGRPTYPDIPGAR  272 (296)
Q Consensus       245 g~~~~~~a~~vV~AtG~~p~~p~i~G~~  272 (296)
                      |  ..+.||.||+|||+.+..+.++|..
T Consensus       165 G--~~I~Ad~VVLATGt~s~~~~i~G~~  190 (651)
T 3ces_A          165 G--LKFRAKAVVLTVGTFLDGKIHIGLD  190 (651)
T ss_dssp             S--EEEEEEEEEECCSTTTCCEEECC--
T ss_pred             C--CEEECCEEEEcCCCCccCccccCcc
Confidence            5  6799999999999988877777764

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=99.24  E-value=1.4e-11  Score=113.04  Aligned_cols=139  Identities=17%  Similarity=0.203  Sum_probs=83.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhC--CCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASM--NKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      +||+|||||++|+.+|.+|++.  |.+|+|+|  +.+      .++.       .+........      ....      
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie--~~~------~~~~-------~~~~~~~~~~------g~~~------   53 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYE--MND------NISF-------LSCGIALYLG------KEIK------   53 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEE--SSS------CCCB-------CGGGHHHHHT------TCBG------
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEE--CCC------CCCc-------ccccchhhhc------CCcc------
Confidence            4899999999999999999998  99999999  443      2221       1111000000      0000      


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcce-EEEE--eCCEEEE-c---ceeEEEEeCeEEEcCCCCCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK-AVFV--DKHRVKF-A---GEERTVSAQNFIIAVGGRPTYP  266 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~--~~~~v~v-~---g~~~~~~a~~vV~AtG~~p~~p  266 (296)
                        ..++..+           ...+...+++.+++++.+. ....  +.+.+.+ +   ++...+.+|++|+|||++|+.|
T Consensus        54 --~~~~~~~-----------~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~~p  120 (452)
T 2cdu_A           54 --NNDPRGL-----------FYSSPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVP  120 (452)
T ss_dssp             --GGCGGGG-----------BSCCHHHHHHTTCEEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             --cCCHHHh-----------hhcCHHHHHHcCCEEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcCCC
Confidence              0001110           0011233455689986654 3333  2456766 2   2236799999999999999999


Q ss_pred             CCCCCc-cceeecc---------cCCCCCCcEEEeecc
Q psy7665         267 DIPGAR-LLRTLSL---------LSGVDPPTLIFLEHI  294 (296)
Q Consensus       267 ~i~G~~-~~~~~s~---------~~~~~~~~~~~~~~~  294 (296)
                      ++||.+ ..++++.         ...+.++++++++.+
T Consensus       121 ~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG  158 (452)
T 2cdu_A          121 PIPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSG  158 (452)
T ss_dssp             CCTTTTSTTEEECSSHHHHHHHHHHGGGCSEEEEECCS
T ss_pred             CCCCCCCCCEEEeCcHHHHHHHHHHhccCCeEEEECcC
Confidence            999986 3344321         112357778887654

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=99.24  E-value=3.1e-12  Score=117.01  Aligned_cols=137  Identities=13%  Similarity=0.255  Sum_probs=80.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--CcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665         117 DLCVIGGGSGGISAAKEAASMN--KKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK  194 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~  194 (296)
                      +|+||||||+|++||.+|++.|  .+|+|||  +.+      ..++   ...|+|... .      .. .......+   
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie--~~~------~~~~---~~~~l~~~~-~------~~-~~~~~~~~---   59 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFE--KDR------DMSF---ANCALPYVI-G------EV-VEDRRYAL---   59 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEE--SSS------CSSB---CGGGHHHHH-T------TS-SCCGGGTB---
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEe--CCC------CCCC---CcchhHHHH-c------CC-ccchhhhh---
Confidence            6999999999999999999988  4699999  433      2211   111222100 0      00 00000000   


Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcce-EEEEe--CCEEEE----cceeEEEEeCeEEEcCCCCCCCCC
Q psy7665         195 KSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK-AVFVD--KHRVKF----AGEERTVSAQNFIIAVGGRPTYPD  267 (296)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~--~~~v~v----~g~~~~~~a~~vV~AtG~~p~~p~  267 (296)
                       ....                  ...+++.+++++.+. +..++  ...+.+    ++....+.||+||+|||++|+.|+
T Consensus        60 -~~~~------------------~~~~~~~~i~~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~p~  120 (437)
T 4eqs_A           60 -AYTP------------------EKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSLG  120 (437)
T ss_dssp             -CCCH------------------HHHHHHHCCEEEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECCCC
T ss_pred             -hcCH------------------HHHHHhcCCEEEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCcccccc
Confidence             0000                  112234588886654 33333  334544    344467899999999999999999


Q ss_pred             CCCCccceeecc---------cCCCCCCcEEEeecc
Q psy7665         268 IPGARLLRTLSL---------LSGVDPPTLIFLEHI  294 (296)
Q Consensus       268 i~G~~~~~~~s~---------~~~~~~~~~~~~~~~  294 (296)
                      +||...+...+.         .....++++++++++
T Consensus       121 i~g~~~~~~~~~~~~~~l~~~~~~~~~~~vvViGgG  156 (437)
T 4eqs_A          121 FESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAG  156 (437)
T ss_dssp             CCCTTEECCSSHHHHHHHHHHHHHHTCCEEEEECCS
T ss_pred             ccCceEEeeccHHHHHHHHHhhhccCCcEEEEECCc
Confidence            999765544331         223457788888764

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.24  E-value=5.7e-12  Score=121.62  Aligned_cols=126  Identities=19%  Similarity=0.276  Sum_probs=81.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..+||+|||||++|+++|++|+++|++|+|||  +.+      .+||.|....++|.                       
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE--~~~------~~GG~~~~~~~~p~-----------------------  438 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRGYDVVLAE--AGR------DLGGRVTQESALPG-----------------------  438 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC--SSS------SSCTHHHHHHTSTT-----------------------
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCeEEEEe--cCC------CCCCEeeeccCCCc-----------------------
Confidence            45799999999999999999999999999999  666      78887654333331                       


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CcEEEcceEEEEeCCEEEE-cceeEEEEeCeEEEcCCCC--------C
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKN-KIDYFNAKAVFVDKHRVKF-AGEERTVSAQNFIIAVGGR--------P  263 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~v~v-~g~~~~~~a~~vV~AtG~~--------p  263 (296)
                        ..++..+..+           +...+.+. +++++.++       .++. +.  ..+.+|+||+|||+.        |
T Consensus       439 --~~~~~~~~~~-----------~~~~~~~~~gv~~~~~~-------~v~~~~~--~~~~~d~lvlAtG~~~~~~~~~~~  496 (690)
T 3k30_A          439 --LSAWGRVKEY-----------REAVLAELPNVEIYRES-------PMTGDDI--VEFGFEHVITATGATWRTDGVARF  496 (690)
T ss_dssp             --CGGGGHHHHH-----------HHHHHHTCTTEEEESSC-------CCCHHHH--HHTTCCEEEECCCEEECSSCCSSS
T ss_pred             --hhHHHHHHHH-----------HHHHHHHcCCCEEEECC-------eecHHHH--hhcCCCEEEEcCCCcccccccccc
Confidence              1112222222           22334444 78877643       2222 22  346799999999997        5


Q ss_pred             CCCCCCCCcc-ceeec--ccCCC--CCCcEEEee
Q psy7665         264 TYPDIPGARL-LRTLS--LLSGV--DPPTLIFLE  292 (296)
Q Consensus       264 ~~p~i~G~~~-~~~~s--~~~~~--~~~~~~~~~  292 (296)
                      ..|++||.+. .+.++  .+...  ..+++++++
T Consensus       497 ~~~~i~G~~~~~v~~~~~~l~~~~~~g~~VvViG  530 (690)
T 3k30_A          497 HTTALPIAEGMQVLGPDDLFAGRLPDGKKVVVYD  530 (690)
T ss_dssp             CSSCCCBCTTSEEECHHHHHTTCCCSSSEEEEEE
T ss_pred             CCCCCCCCCCCcEEcHHHHhCCCCCCCCEEEEEc
Confidence            5788999873 34443  22322  234477776

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=99.24  E-value=5.9e-12  Score=114.20  Aligned_cols=134  Identities=18%  Similarity=0.266  Sum_probs=81.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCc--EEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKK--VALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~--V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      .+|+|||||++|+++|.+|+++|++  |+|+|  +.+      ..+...   ..++..++..       ....... +  
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~--~~~------~~~y~~---~~l~~~~~~g-------~~~~~~~-~--   61 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIG--DEP------HLPYDR---PSLSKAVLDG-------SLERPPI-L--   61 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEE--CSS------SSSBCS---GGGGTHHHHT-------SSSSCCB-S--
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEE--CCC------CCCcCC---ccccHHHhCC-------CCCHHHh-c--
Confidence            4899999999999999999999987  99999  443      211100   0000000000       0000000 0  


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcc-eEEEEe--CCEEEE-cceeEEEEeCeEEEcCCCCCCCCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA-KAVFVD--KHRVKF-AGEERTVSAQNFIIAVGGRPTYPDIP  269 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~i~  269 (296)
                                            .....+.+.+++++.+ ++..++  .+.+.+ ++  ..+.+|+||+|||++|+.|++|
T Consensus        62 ----------------------~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~~~~d~lvlAtG~~p~~~~ip  117 (410)
T 3ef6_A           62 ----------------------AEADWYGEARIDMLTGPEVTALDVQTRTISLDDG--TTLSADAIVIATGSRARTMALP  117 (410)
T ss_dssp             ----------------------SCTTHHHHTTCEEEESCCEEEEETTTTEEEETTS--CEEECSEEEECCCEEECCCCCT
T ss_pred             ----------------------CCHHHHHHCCCEEEeCCEEEEEECCCCEEEECCC--CEEECCEEEEccCCcccCCCCC
Confidence                                  0012234568999877 554444  356776 55  5789999999999999999999


Q ss_pred             CCc-cceeec--c-------cCCCCCCcEEEeecc
Q psy7665         270 GAR-LLRTLS--L-------LSGVDPPTLIFLEHI  294 (296)
Q Consensus       270 G~~-~~~~~s--~-------~~~~~~~~~~~~~~~  294 (296)
                      |.+ ..+.+.  .       .....++++++++++
T Consensus       118 G~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG  152 (410)
T 3ef6_A          118 GSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGG  152 (410)
T ss_dssp             TTTSTTEECCCSHHHHHHHHHHCCTTCEEEEECCS
T ss_pred             CccccceEEeccHHHHHHHHHHhccCCeEEEECCC
Confidence            976 333321  1       123456778887654

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.24  E-value=2.8e-11  Score=101.19  Aligned_cols=124  Identities=20%  Similarity=0.195  Sum_probs=70.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK  194 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~  194 (296)
                      .+||+|||||++|+++|..|++.|.+|+|+|  +..     ..+| .+    |.|.............+..  ..     
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie--~~~-----~~~G-~~----~~~~~~~~~~~~~~~~~~d--~~-----   63 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLT--QSL-----DAVM-MP----FLPPKPPFPPGSLLERAYD--PK-----   63 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEE--SCG-----GGTT-CC----SSCCCSCCCTTCHHHHHCC--TT-----
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEe--cCC-----CcCC-cc----cCccccccchhhHHhhhcc--CC-----
Confidence            4799999999999999999999999999999  432     0233 21    2211000000000000000  00     


Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CcEEEcceEEE--EeCCE---EEE-cceeEEEEeCeEEEcCCCCCCCCC
Q psy7665         195 KSFTWKTLVDNVQKYIRNLNNNYEKELEKN-KIDYFNAKAVF--VDKHR---VKF-AGEERTVSAQNFIIAVGGRPTYPD  267 (296)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~--~~~~~---v~v-~g~~~~~~a~~vV~AtG~~p~~p~  267 (296)
                       ..           ....+...+.+.+++. +++++..+...  .+...   +.+ ++  .++.||+||+|+|..+....
T Consensus        64 -g~-----------~~~~~~~~l~~~~~~~~gv~i~~~~v~~i~~~~~~v~~v~~~~g--~~i~a~~VV~A~G~~s~~~~  129 (232)
T 2cul_A           64 -DE-----------RVWAFHARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEG--PPARGEKVVLAVGSFLGARL  129 (232)
T ss_dssp             -CC-----------CHHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTS--CCEECSEEEECCTTCSSCEE
T ss_pred             -CC-----------CHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEeCCEEEEEEECCC--CEEECCEEEECCCCChhhce
Confidence             00           0122334455666776 89887654432  23333   333 44  47899999999998665544


Q ss_pred             CCCC
Q psy7665         268 IPGA  271 (296)
Q Consensus       268 i~G~  271 (296)
                      ++|.
T Consensus       130 ~~G~  133 (232)
T 2cul_A          130 FLGG  133 (232)
T ss_dssp             EETT
T ss_pred             ecCC
Confidence            4444

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.24  E-value=4.9e-12  Score=113.03  Aligned_cols=133  Identities=18%  Similarity=0.177  Sum_probs=78.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK  194 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~  194 (296)
                      +.||+|||||++|+++|.+|++.| +|+|+|  +.+      ..+    +..+....          .+.     +    
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie--~~~------~~~----~~~~~l~~----------~~~-----g----   55 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVID--KEP------VPY----YSKPMLSH----------YIA-----G----   55 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS-EEEEEC--SSS------SCC----CCSTTHHH----------HHT-----T----
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC-CEEEEE--CCC------CCc----cccchhHH----------HHh-----C----
Confidence            459999999999999999999999 999999  433      111    00010000          000     0    


Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcce-EEEEeC--CEEEEcceeEEEEeCeEEEcCCCCCCCCCCCCC
Q psy7665         195 KSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK-AVFVDK--HRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGA  271 (296)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~--~~v~v~g~~~~~~a~~vV~AtG~~p~~p~i~G~  271 (296)
                       ..++..+..+           ....+++.+++++.++ +..++.  +.|+.++  .++.||+||+|||++|+.|++||.
T Consensus        56 -~~~~~~~~~~-----------~~~~~~~~~v~~~~g~~v~~id~~~~~V~~~g--~~~~~d~lViATGs~p~~p~i~G~  121 (367)
T 1xhc_A           56 -FIPRNRLFPY-----------SLDWYRKRGIEIRLAEEAKLIDRGRKVVITEK--GEVPYDTLVLATGARAREPQIKGK  121 (367)
T ss_dssp             -SSCGGGGCSS-----------CHHHHHHHTEEEECSCCEEEEETTTTEEEESS--CEEECSEEEECCCEEECCCCSBTG
T ss_pred             -CCCHHHhccC-----------CHHHHHhCCcEEEECCEEEEEECCCCEEEECC--cEEECCEEEECCCCCCCCCCCCCc
Confidence             0111111100           1122344589988774 454443  3454344  569999999999999999999994


Q ss_pred             ccceeec--c---cCC----CCCCcEEEeecc
Q psy7665         272 RLLRTLS--L---LSG----VDPPTLIFLEHI  294 (296)
Q Consensus       272 ~~~~~~s--~---~~~----~~~~~~~~~~~~  294 (296)
                       +.+.++  .   ...    +.+++++|++++
T Consensus       122 -~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG  152 (367)
T 1xhc_A          122 -EYLLTLRTIFDADRIKESIENSGEAIIIGGG  152 (367)
T ss_dssp             -GGEECCCSHHHHHHHHHHHHHHSEEEEEECS
T ss_pred             -CCEEEEcCHHHHHHHHHHhhcCCcEEEECCC
Confidence             444432  1   111    123678887654

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.23  E-value=1e-10  Score=103.99  Aligned_cols=136  Identities=15%  Similarity=0.183  Sum_probs=72.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      .+||+|||||++|+++|.+|++.|+ +|+|||  +.       .+||.|.++..... . .      ........+++..
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie--~~-------~~Gg~~~~~~~~~~-~-~------~~~~~~~~~g~~~   66 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILE--KG-------TVGHSFKHWPKSTR-T-I------TPSFTSNGFGMPD   66 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEC--SS-------STTHHHHTSCTTCB-C-S------SCCCCCGGGTCCC
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEe--cC-------CCCCccccCccccc-c-c------CcchhcccCCchh
Confidence            4799999999999999999999999 999999  33       36676654321100 0 0      0000011122210


Q ss_pred             -cc-cCCHHHHHHHHHH--HHHHHHHHHHHHHHHCCcEEEcce-EEEEe----CCEEEEcceeEEEEeCeEEEcCCCCCC
Q psy7665         194 -KK-SFTWKTLVDNVQK--YIRNLNNNYEKELEKNKIDYFNAK-AVFVD----KHRVKFAGEERTVSAQNFIIAVGGRPT  264 (296)
Q Consensus       194 -~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~----~~~v~v~g~~~~~~a~~vV~AtG~~p~  264 (296)
                       .. ..++.........  ....+...+...+++.+++++.++ +...+    .+.|.+.+  ..+.||+||+|||+.+.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~--g~~~~d~vVlAtG~~~~  144 (369)
T 3d1c_A           67 MNAISMDTSPAFTFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTT--ETYHADYIFVATGDYNF  144 (369)
T ss_dssp             TTCSSTTCCHHHHHCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESS--CCEEEEEEEECCCSTTS
T ss_pred             hhhccccccccccccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCC--CEEEeCEEEECCCCCCc
Confidence             00 0000000000000  001122223344556689887654 32222    23454443  25889999999999765


Q ss_pred             CCCCCC
Q psy7665         265 YPDIPG  270 (296)
Q Consensus       265 ~p~i~G  270 (296)
                       |.+|+
T Consensus       145 -p~ip~  149 (369)
T 3d1c_A          145 -PKKPF  149 (369)
T ss_dssp             -BCCCS
T ss_pred             -cCCCC
Confidence             66776

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.23  E-value=9.6e-12  Score=120.65  Aligned_cols=132  Identities=23%  Similarity=0.285  Sum_probs=81.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..+||+|||||++|++||.+|+++|++|+|||  +.+      .+||.|....++|..                      
T Consensus       388 ~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie--~~~------~~GG~~~~~~~~pg~----------------------  437 (729)
T 1o94_A          388 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTD--TAE------KIGGHLNQVAALPGL----------------------  437 (729)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEEC--SSS------STTTTHHHHTTSTTC----------------------
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEEEe--CCC------CcCCeeeecccCCCh----------------------
Confidence            45799999999999999999999999999999  666      678877655444421                      


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE-cceeEEEEeCeEEEcCCCC--------CC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF-AGEERTVSAQNFIIAVGGR--------PT  264 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v-~g~~~~~~a~~vV~AtG~~--------p~  264 (296)
                         .++..+..++....+.+.     .....++++..+       ..+++ ++  ..+.+|+||+|||+.        |.
T Consensus       438 ---~~~~~~~~~~~~~i~~~~-----~~~~~~v~i~~~-------~~v~~~~~--~~~~~d~vviAtG~~~~~~~~~~p~  500 (729)
T 1o94_A          438 ---GEWSYHRDYRETQITKLL-----KKNKESQLALGQ-------KPMTADDV--LQYGADKVIIATGARWNTDGTNCLT  500 (729)
T ss_dssp             ---GGGHHHHHHHHHHHHHHH-----HHSTTCEEECSC-------CCCCHHHH--HTSCCSEEEECCCEEECSSCCCTTT
T ss_pred             ---HHHHHHHHHHHHHHHHhh-----cccCCceEEEeC-------eEEehhhc--cccCCCEEEEcCCCCcccccccCcc
Confidence               112223333322222210     011224554332       22333 22  347899999999987        56


Q ss_pred             CCCCCCCcc---ceeec--ccCCC--CCCcEEEee
Q psy7665         265 YPDIPGARL---LRTLS--LLSGV--DPPTLIFLE  292 (296)
Q Consensus       265 ~p~i~G~~~---~~~~s--~~~~~--~~~~~~~~~  292 (296)
                      .|++||.++   .+++.  ++...  ..++++||+
T Consensus       501 ~~~ipG~~~~~~~v~~~~~~l~~~~~~gk~VvVIG  535 (729)
T 1o94_A          501 HDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILN  535 (729)
T ss_dssp             SSCCTTCCTTSTTEECHHHHHHCCSCCCSEEEEEE
T ss_pred             CCCCCCccccCCCEEEHHHHhcCCCCCCCeEEEEc
Confidence            788999762   34443  22222  234688876

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=99.23  E-value=7.7e-12  Score=114.37  Aligned_cols=112  Identities=21%  Similarity=0.402  Sum_probs=74.8

Q ss_pred             ccEEEECCChHHHHHHHHHHh---CCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcc
Q psy7665         116 YDLCVIGGGSGGISAAKEAAS---MNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFH  192 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~---~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~  192 (296)
                      .||+|||||++|+++|.+|++   .|.+|+|||  +.+      ...       +.|......             .+  
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie--~~~------~~~-------~~~~~~~~~-------------~g--   54 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLIS--AND------YFQ-------FVPSNPWVG-------------VG--   54 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEEC--SSS------EEE-------CGGGHHHHH-------------HT--
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEe--CCC------CCc-------ccCCccccc-------------cC--
Confidence            489999999999999999999   899999999  443      100       011000000             00  


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeC--CEEEE-cceeEEEEeCeEEEcCCCCCCCCCCC
Q psy7665         193 MKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDK--HRVKF-AGEERTVSAQNFIIAVGGRPTYPDIP  269 (296)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~i~  269 (296)
                         ....           +.+...+...+++.+++++.+++..++.  ..|++ ++  .++.||+||+|||++|+.|++|
T Consensus        55 ---~~~~-----------~~~~~~l~~~~~~~gv~~~~~~v~~id~~~~~V~~~~g--~~i~~d~lviAtG~~~~~~~ip  118 (437)
T 3sx6_A           55 ---WKER-----------DDIAFPIRHYVERKGIHFIAQSAEQIDAEAQNITLADG--NTVHYDYLMIATGPKLAFENVP  118 (437)
T ss_dssp             ---SSCH-----------HHHEEECHHHHHTTTCEEECSCEEEEETTTTEEEETTS--CEEECSEEEECCCCEECGGGST
T ss_pred             ---ccCH-----------HHHHHHHHHHHHHCCCEEEEeEEEEEEcCCCEEEECCC--CEEECCEEEECCCCCcCcccCC
Confidence               0000           1111223445566799998877655443  46766 45  5689999999999999999999


Q ss_pred             CCcc
Q psy7665         270 GARL  273 (296)
Q Consensus       270 G~~~  273 (296)
                      |.++
T Consensus       119 G~~~  122 (437)
T 3sx6_A          119 GSDP  122 (437)
T ss_dssp             TCST
T ss_pred             CCCc
Confidence            9874

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=99.23  E-value=4.3e-12  Score=116.59  Aligned_cols=108  Identities=21%  Similarity=0.351  Sum_probs=72.5

Q ss_pred             cccEEEECCChHHHHHHHHHHh-C------CCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAAS-M------NKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSD  187 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~-~------G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~  187 (296)
                      .+||+||||||+|+.+|.+|++ .      |.+|+|||  +.+      .+||.| ..++.|.+                
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie--~~~------~~gg~~-~~gv~p~~----------------   57 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLE--MLP------TPWGLV-RSGVAPDH----------------   57 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEE--SSS------SCSTHH-HHTSCTTC----------------
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEe--cCC------CCCCcc-ccccCCCC----------------
Confidence            4699999999999999999999 7      99999999  665      667766 23443321                


Q ss_pred             ccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCC-CCCC
Q psy7665         188 NFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGR-PTYP  266 (296)
Q Consensus       188 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~-p~~p  266 (296)
                               .....+.           ..+...+++.+++++.+..  . ...|++++  ..+.||+||+|||+. |+.|
T Consensus        58 ---------~~~~~~~-----------~~~~~~~~~~~v~~~~~v~--v-~~~v~~~~--~~~~~d~lViAtG~~~~~~~  112 (456)
T 1lqt_A           58 ---------PKIKSIS-----------KQFEKTAEDPRFRFFGNVV--V-GEHVQPGE--LSERYDAVIYAVGAQSDRML  112 (456)
T ss_dssp             ---------TGGGGGH-----------HHHHHHHTSTTEEEEESCC--B-TTTBCHHH--HHHHSSEEEECCCCCEECCC
T ss_pred             ---------CCHHHHH-----------HHHHHHHhcCCCEEEeeEE--E-CCEEEECC--CeEeCCEEEEeeCCCCCCCC
Confidence                     0111111           1223344556888876532  1 22344422  146899999999996 6888


Q ss_pred             CCCCCc
Q psy7665         267 DIPGAR  272 (296)
Q Consensus       267 ~i~G~~  272 (296)
                      ++||.+
T Consensus       113 ~ipG~~  118 (456)
T 1lqt_A          113 NIPGED  118 (456)
T ss_dssp             CCTTTT
T ss_pred             CCCCCC
Confidence            999976

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.22  E-value=1e-10  Score=116.64  Aligned_cols=138  Identities=19%  Similarity=0.246  Sum_probs=84.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..+||+||||||+|+.||.+|++.|++|+|||  +.+      .+||+|.+  | |..                  .+. 
T Consensus       127 ~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie--~~~------~~GG~~~~--~-~k~------------------~i~-  176 (965)
T 2gag_A          127 VHTDVLVVGAGPAGLAAAREASRSGARVMLLD--ERA------EAGGTLLD--T-AGE------------------QID-  176 (965)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEC--SSS------SSSGGGGG--S-SCC------------------EET-
T ss_pred             cCCCEEEECCCHHHHHHHHHHHhCCCcEEEEe--CCC------CCCceecc--C-Ccc------------------ccC-
Confidence            45799999999999999999999999999999  666      67887762  2 100                  000 


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CcEEEcceEEE-Ee-CCEEE----------Ec-------ceeEEEEeC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKN-KIDYFNAKAVF-VD-KHRVK----------FA-------GEERTVSAQ  253 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~-~~-~~~v~----------v~-------g~~~~~~a~  253 (296)
                        .....++           ...+...+... +++++.++... +. ...+.          +.       +....+.||
T Consensus       177 --~~~~~~~-----------~~~~~~~l~~~~~v~~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d  243 (965)
T 2gag_A          177 --GMDSSAW-----------IEQVTSELAEAEETTHLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAK  243 (965)
T ss_dssp             --TEEHHHH-----------HHHHHHHHHHSTTEEEESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEE
T ss_pred             --CCCHHHH-----------HHHHHHHHhhcCCcEEEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEEECC
Confidence              0000011           11222334443 88887664322 21 11111          10       222468999


Q ss_pred             eEEEcCCCCCCCCCCCCCc-cceeec-----cc--CCCCC-CcEEEeecc
Q psy7665         254 NFIIAVGGRPTYPDIPGAR-LLRTLS-----LL--SGVDP-PTLIFLEHI  294 (296)
Q Consensus       254 ~vV~AtG~~p~~p~i~G~~-~~~~~s-----~~--~~~~~-~~~~~~~~~  294 (296)
                      +||+|||+.|+.|++||.+ ..++++     ++  ....+ ++++|+..+
T Consensus       244 ~lVlATGs~p~~~~ipG~~~~gv~~~~~~~~~l~~~~~~~gk~vvViGgG  293 (965)
T 2gag_A          244 QVVLATGAHERPIVFENNDRPGIMLAGAVRSYLNRYGVRAGARIAVATTN  293 (965)
T ss_dssp             EEEECCCEEECCCCCBTCCSTTEEEHHHHHHHHHTTCEESCSSEEEEESS
T ss_pred             EEEECCCCccCCCCCCCCCCCCEEEhHHHHHHHHhcCCCCCCeEEEEcCC
Confidence            9999999999999999976 335543     11  12223 567777654

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=99.22  E-value=1.6e-11  Score=113.66  Aligned_cols=136  Identities=22%  Similarity=0.220  Sum_probs=81.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhC--CCcEEEEeccCCCCCCcccccCC-eeeccCCCchhHHHHhhhhHHHhhcccccCcc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASM--NKKVALFDFVTPSQHGTVWGLGG-TCVNVGCIPKKLFHRASLLNEEATTSDNFGFH  192 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~~~~~~~g~~~~~GG-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~  192 (296)
                      +||+|||||++|+.+|.+|++.  |.+|+|||  +.+      ..++ .|.    +|..           ..     +. 
T Consensus        37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie--~~~------~~~~~~~~----~~~~-----------~~-----~~-   87 (480)
T 3cgb_A           37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLE--KGE------IYSYAQCG----LPYV-----------IS-----GA-   87 (480)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEC--SSS------CCSBCGGG----HHHH-----------HT-----TS-
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEE--CCC------CCCCCCCC----cchh-----------hc-----CC-
Confidence            5999999999999999999996  89999999  443      2221 110    1100           00     00 


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHH-HHCCcEEEcceE-EEEe--CCEEEE-c---ceeEEEEeCeEEEcCCCCCC
Q psy7665         193 MKKSFTWKTLVDNVQKYIRNLNNNYEKEL-EKNKIDYFNAKA-VFVD--KHRVKF-A---GEERTVSAQNFIIAVGGRPT  264 (296)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~-~~~~--~~~v~v-~---g~~~~~~a~~vV~AtG~~p~  264 (296)
                         ..++..+..+           ....+ +..+++++.+.. ..++  .+.+.+ +   |+..++.||+||+|||++|+
T Consensus        88 ---~~~~~~l~~~-----------~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~  153 (480)
T 3cgb_A           88 ---IASTEKLIAR-----------NVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPV  153 (480)
T ss_dssp             ---SSCGGGGBSS-----------CHHHHHHTTCCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC
T ss_pred             ---cCCHHHhhhc-----------CHHHHHhhcCCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCccc
Confidence               0011111000           01222 334899887543 3333  456666 3   43347999999999999999


Q ss_pred             CCCCCCCc-cceeec-----ccCC------CCCCcEEEeecc
Q psy7665         265 YPDIPGAR-LLRTLS-----LLSG------VDPPTLIFLEHI  294 (296)
Q Consensus       265 ~p~i~G~~-~~~~~s-----~~~~------~~~~~~~~~~~~  294 (296)
                      .|++||.+ +.+.++     .+.+      ..+++++|++.+
T Consensus       154 ~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG  195 (480)
T 3cgb_A          154 MPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGG  195 (480)
T ss_dssp             CCCCBTTTSBTEECCSSHHHHHHHHHHHHSSCCCEEEEECCH
T ss_pred             CCCCCCccCCCEEEeCCHHHHHHHHHHhhhcCCCeEEEECCC
Confidence            99999986 334332     1111      157788887653

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=99.21  E-value=4.1e-12  Score=116.88  Aligned_cols=114  Identities=17%  Similarity=0.295  Sum_probs=74.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--CcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMN--KKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFH  192 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~  192 (296)
                      .+||+||||||+|+.+|.+|++.|  .+|+|||  +.+      .+||.| ..++.|.+                     
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie--~~~------~~gg~~-~~g~~p~~---------------------   55 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYE--KQL------VPFGLV-RFGVAPDH---------------------   55 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEEC--SSS------SSCTHH-HHTSCTTC---------------------
T ss_pred             CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEe--CCC------cCCcee-ecccCCCC---------------------
Confidence            469999999999999999999998  9999999  555      556644 22333321                     


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCCC-CCCCCCCC
Q psy7665         193 MKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRP-TYPDIPGA  271 (296)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~p-~~p~i~G~  271 (296)
                          .....+           ...+...+++.+++++.+...   ...|++++  ..+.||+||+|||+.| +.|++||.
T Consensus        56 ----~~~~~~-----------~~~~~~~~~~~gv~~~~~~~v---~~~V~~~~--~~~~~d~lVlAtGs~~~~~~~ipG~  115 (460)
T 1cjc_A           56 ----PEVKNV-----------INTFTQTARSDRCAFYGNVEV---GRDVTVQE--LQDAYHAVVLSYGAEDHQALDIPGE  115 (460)
T ss_dssp             ----GGGGGH-----------HHHHHHHHTSTTEEEEBSCCB---TTTBCHHH--HHHHSSEEEECCCCCEECCCCCTTT
T ss_pred             ----ccHHHH-----------HHHHHHHHHhCCcEEEeeeEE---eeEEEecc--ceEEcCEEEEecCcCCCCCCCCCCC
Confidence                000111           122334456678888765321   12333332  2367999999999985 77899997


Q ss_pred             c-cceeec
Q psy7665         272 R-LLRTLS  278 (296)
Q Consensus       272 ~-~~~~~s  278 (296)
                      + ..++++
T Consensus       116 ~~~gv~~~  123 (460)
T 1cjc_A          116 ELPGVFSA  123 (460)
T ss_dssp             TSTTEEEH
T ss_pred             CCCcEEEH
Confidence            6 334443

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=99.21  E-value=1.2e-11  Score=112.06  Aligned_cols=133  Identities=16%  Similarity=0.158  Sum_probs=82.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCC--cEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNK--KVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGF  191 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~  191 (296)
                      ..+||+|||||++|+++|.+|++.|.  +|+|+|  +.+      .++.    ..+..++.+...       .      .
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie--~~~------~~~~----~~~~~~~~~~~~-------~------~   60 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVG--DEA------ERPY----DRPPLSKDFMAH-------G------D   60 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEE--SSC------SCCB----CSGGGGTHHHHH-------C------C
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEE--CCC------CCcc----cCCCCCHHHhCC-------C------c
Confidence            45799999999999999999999998  499999  443      1111    001001000000       0      0


Q ss_pred             cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcce-EEEEe--CCEEEE-cceeEEEEeCeEEEcCCCCCCCCC
Q psy7665         192 HMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK-AVFVD--KHRVKF-AGEERTVSAQNFIIAVGGRPTYPD  267 (296)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~--~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~  267 (296)
                                        .+.+  .+. .+++.+++++.++ +..++  .+.|++ ++  .++.+|+||+|||++|..|+
T Consensus        61 ------------------~~~~--~~~-~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~~~~~~  117 (408)
T 2gqw_A           61 ------------------AEKI--RLD-CKRAPEVEWLLGVTAQSFDPQAHTVALSDG--RTLPYGTLVLATGAAPRALP  117 (408)
T ss_dssp             ------------------GGGS--BCC-CTTSCSCEEEETCCEEEEETTTTEEEETTS--CEEECSEEEECCCEEECCCG
T ss_pred             ------------------hhhh--hHH-HHHHCCCEEEcCCEEEEEECCCCEEEECCC--CEEECCEEEECCCCCCCCCC
Confidence                              0000  000 2345689988765 44444  467777 55  57899999999999999999


Q ss_pred             C-CCCccceeec--c-----c--CCCCCCcEEEeecc
Q psy7665         268 I-PGARLLRTLS--L-----L--SGVDPPTLIFLEHI  294 (296)
Q Consensus       268 i-~G~~~~~~~s--~-----~--~~~~~~~~~~~~~~  294 (296)
                      + ||.++.+.+.  .     +  ....+++++|++.+
T Consensus       118 i~~G~~~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG  154 (408)
T 2gqw_A          118 TLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGG  154 (408)
T ss_dssp             GGTTCSSCEEECCSHHHHHHHHTTCCTTCEEEEECCS
T ss_pred             ccCCCCCcEEEECCHHHHHHHHHHhhcCCeEEEECCC
Confidence            9 9976333321  1     1  12346778887654

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.21  E-value=5.6e-12  Score=112.87  Aligned_cols=45  Identities=33%  Similarity=0.535  Sum_probs=37.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGG  160 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG  160 (296)
                      ..|||+||||||+|+++|+.|+++|++|+|+|  +.+.+|.....|+
T Consensus         3 e~yDViIVGaGpaGl~~A~~La~~G~~V~v~E--r~~~~~~~~~~g~   47 (397)
T 3oz2_A            3 ETYDVLVVGGGPGGSTAARYAAKYGLKTLMIE--KRPEIGSPVRCGE   47 (397)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEC--SSSSTTCSCCSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEe--CCCCCCCCCceec
Confidence            45899999999999999999999999999999  6665555434444

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=99.21  E-value=4.7e-12  Score=114.99  Aligned_cols=115  Identities=21%  Similarity=0.254  Sum_probs=72.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCc--EEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKK--VALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGF  191 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~--V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~  191 (296)
                      ..+||+|||||++|+++|.+|+++|++  |+|+|  +.+      ..+...      |.               +...-+
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie--~~~------~~~y~~------~~---------------l~~~~~   58 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIG--REP------EIPYER------PP---------------LSKEYL   58 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEE--SSS------SCCBCS------GG---------------GGTTTT
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEe--cCC------CCCcCc------cc---------------CCHHHH
Confidence            457999999999999999999999987  99999  443      111100      00               000000


Q ss_pred             cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcc-eEEEEe--CCEEEE-cceeEEEEeCeEEEcCCCCCCCCC
Q psy7665         192 HMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA-KAVFVD--KHRVKF-AGEERTVSAQNFIIAVGGRPTYPD  267 (296)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~  267 (296)
                      ..  ......+           .......+.+.+++++.+ ++...+  .+.+.+ ++  ..+.+|++|+|||++|+.|+
T Consensus        59 ~~--~~~~~~~-----------~~~~~~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g--~~~~~d~lvlAtG~~~~~~~  123 (415)
T 3lxd_A           59 AR--EKTFERI-----------CIRPAQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDG--SAIEYGKLIWATGGDPRRLS  123 (415)
T ss_dssp             TT--SSCSGGG-----------BSSCHHHHHHTTEEEEETCCEEEEETTTTEEEETTS--CEEEEEEEEECCCEECCCCB
T ss_pred             cC--CCCHHHh-----------ccCCHHHHHHCCcEEEeCCEEEEEECCCCEEEECCC--CEEEeeEEEEccCCccCCCC
Confidence            00  0000000           001123345568998876 444443  346666 55  57899999999999999999


Q ss_pred             CCCCc
Q psy7665         268 IPGAR  272 (296)
Q Consensus       268 i~G~~  272 (296)
                      +||.+
T Consensus       124 i~g~~  128 (415)
T 3lxd_A          124 CVGAD  128 (415)
T ss_dssp             TTSSC
T ss_pred             CCCcc
Confidence            99976

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=99.20  E-value=1.8e-11  Score=111.74  Aligned_cols=136  Identities=14%  Similarity=0.198  Sum_probs=81.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC--cEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK--KVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFH  192 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~  192 (296)
                      .+||+|||||++|+++|..|++.|.  +|+|+|  +.+      .....    .+..++.               ...  
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie--~~~------~~~~~----~~~l~~~---------------~~~--   54 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVG--DAT------VIPHH----LPPLSKA---------------YLA--   54 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEEC--SCC------SCCBC----SGGGGTT---------------TTT--
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEE--CCC------CCCCc----CCCCcHH---------------HhC--
Confidence            4699999999999999999999998  799999  433      11100    0000000               000  


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcce-EEEEe--CCEEEE-cceeEEEEeCeEEEcCCCCCCCCCC
Q psy7665         193 MKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK-AVFVD--KHRVKF-AGEERTVSAQNFIIAVGGRPTYPDI  268 (296)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~--~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~i  268 (296)
                      .  ......+           .......+++.+++++.+. +..++  .+.|++ ++  .++.||+||+|||++|+.|++
T Consensus        55 ~--~~~~~~~-----------~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~v~~~~g--~~~~~d~lviAtG~~p~~~~i  119 (431)
T 1q1r_A           55 G--KATAESL-----------YLRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDG--RALDYDRLVLATGGRPRPLPV  119 (431)
T ss_dssp             T--CSCSGGG-----------BSSCHHHHHHTTEEEECSCCEEEEETTTTEEEETTS--CEEECSEEEECCCEEECCCGG
T ss_pred             C--CCChHHh-----------cccCHHHHHhCCCEEEeCCEEEEEECCCCEEEECCC--CEEECCEEEEcCCCCccCCCC
Confidence            0  0000000           0001233456689988764 33333  356777 45  578999999999999999999


Q ss_pred             CCCcc-c---eee--cc-------cCCCCCCcEEEeecc
Q psy7665         269 PGARL-L---RTL--SL-------LSGVDPPTLIFLEHI  294 (296)
Q Consensus       269 ~G~~~-~---~~~--s~-------~~~~~~~~~~~~~~~  294 (296)
                      ||.+. .   +.+  +.       .....++++++++++
T Consensus       120 ~G~~~~~~~~v~~~~~~~d~~~l~~~l~~~~~vvViGgG  158 (431)
T 1q1r_A          120 ASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGG  158 (431)
T ss_dssp             GTTHHHHSTTEEESSSHHHHHHHHHTCCTTCEEEEECCS
T ss_pred             CCcccCCCceEEEECCHHHHHHHHHHhhcCCeEEEECCC
Confidence            99752 2   322  11       123457788888653

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.19  E-value=5.7e-11  Score=111.99  Aligned_cols=137  Identities=19%  Similarity=0.240  Sum_probs=79.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhC--CCcEEEEeccCCCCCCcccccCCeeeccCC-CchhHHHHhhhhHHHhhcccccCcc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASM--NKKVALFDFVTPSQHGTVWGLGGTCVNVGC-IPKKLFHRASLLNEEATTSDNFGFH  192 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~g~~  192 (296)
                      .||+|||||++|+++|.+|++.  |.+|+|||  +.+      ..+.    ..| +|.           ..     .+..
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie--~~~------~~~~----~~~~l~~-----------~~-----~~~~   53 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFE--RGE------YVSF----ANCGLPY-----------HI-----SGEI   53 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEEC--SSS------CSSB----CGGGHHH-----------HH-----TSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEE--CCC------Cccc----cccCchH-----------Hh-----cCCc
Confidence            3899999999999999999998  78999999  544      2221    000 010           00     0000


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcce-EEEEe--CCEEEE-c---ceeEEEEeCeEEEcCCCCCCC
Q psy7665         193 MKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK-AVFVD--KHRVKF-A---GEERTVSAQNFIIAVGGRPTY  265 (296)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~--~~~v~v-~---g~~~~~~a~~vV~AtG~~p~~  265 (296)
                      .   .....+..+           .....+..+++++.+. +..++  ...+.+ +   +....+.+|+||+|||++|+.
T Consensus        54 ~---~~~~~~~~~-----------~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~  119 (565)
T 3ntd_A           54 A---QRSALVLQT-----------PESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIV  119 (565)
T ss_dssp             C---CGGGGBCCC-----------HHHHHHHHCCEEETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECC
T ss_pred             C---ChHHhhccC-----------HHHHHHhcCcEEEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCCC
Confidence            0   000000000           0111123478886543 33332  445665 2   544679999999999999999


Q ss_pred             CCCCCCccc-eeecc-------c----CCCCCCcEEEeecc
Q psy7665         266 PDIPGARLL-RTLSL-------L----SGVDPPTLIFLEHI  294 (296)
Q Consensus       266 p~i~G~~~~-~~~s~-------~----~~~~~~~~~~~~~~  294 (296)
                      |++||.+.. +.+..       +    ....+++++|++++
T Consensus       120 p~ipG~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG  160 (565)
T 3ntd_A          120 PPIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGG  160 (565)
T ss_dssp             CCCTTCCSTTEECCSSHHHHHHHHHHHHHTTCSEEEEECCS
T ss_pred             CCCCCCCCCCEEEeCCHHHHHHHHHHHhhCCCCEEEEECCC
Confidence            999998633 33321       0    12456788888754

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.18  E-value=1.3e-10  Score=106.71  Aligned_cols=35  Identities=23%  Similarity=0.209  Sum_probs=32.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-----CcEEEEeccCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMN-----KKVALFDFVTPS  150 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G-----~~V~iiE~~~~~  150 (296)
                      ..+||+|||||++|+++|..|++.|     .+|+|||  +.+
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE--~~~   68 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLD--KQG   68 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEE--SCS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEe--cCC
Confidence            4579999999999999999999999     9999999  555

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.18  E-value=1.2e-10  Score=109.82  Aligned_cols=32  Identities=50%  Similarity=0.770  Sum_probs=30.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..|||+|||||++|++||..|++.|.+|+|+|
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIE   57 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFV   57 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEE
Confidence            35899999999999999999999999999999

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=99.17  E-value=1.8e-11  Score=110.78  Aligned_cols=113  Identities=19%  Similarity=0.282  Sum_probs=70.5

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC--cEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK--KVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      .||+|||||++|+++|.+|+++|+  +|+|||  +.+      ..+....   .++.              .+.......
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie--~~~------~~~y~~~---~l~~--------------~~l~~~~~~   56 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALIN--DEK------HLPYQRP---PLSK--------------AYLKSGGDP   56 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEEC--CSS------SSSBCSG---GGGT--------------GGGGSCCCT
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEe--CCC------CCCCCCc---cCCH--------------HHHCCCCCH
Confidence            489999999999999999999998  899999  433      1111000   0000              000000000


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEe--CCEEEE-cceeEEEEeCeEEEcCCCCCCCCCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVD--KHRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPG  270 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~i~G  270 (296)
                      . .+                .......+.+.+++++..++...+  .+.+.+ ++  ..+.+|++|+|||++|+.|++||
T Consensus        57 ~-~~----------------~~~~~~~~~~~~i~~~~~~v~~id~~~~~v~~~~g--~~~~~d~lvlAtG~~p~~~~i~g  117 (404)
T 3fg2_P           57 N-SL----------------MFRPEKFFQDQAIELISDRMVSIDREGRKLLLASG--TAIEYGHLVLATGARNRMLDVPN  117 (404)
T ss_dssp             T-SS----------------BSSCHHHHHHTTEEEECCCEEEEETTTTEEEESSS--CEEECSEEEECCCEEECCCCSTT
T ss_pred             H-Hc----------------cCCCHHHHHhCCCEEEEEEEEEEECCCCEEEECCC--CEEECCEEEEeeCCCccCCCCCC
Confidence            0 00                000112334568888775554443  346666 55  57899999999999999999999


Q ss_pred             Cc
Q psy7665         271 AR  272 (296)
Q Consensus       271 ~~  272 (296)
                      .+
T Consensus       118 ~~  119 (404)
T 3fg2_P          118 AS  119 (404)
T ss_dssp             TT
T ss_pred             CC
Confidence            76

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.16  E-value=2.2e-11  Score=115.44  Aligned_cols=139  Identities=17%  Similarity=0.230  Sum_probs=82.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC--CCcEEEEeccCCCCCCcccccCCeeeccCC-CchhHHHHhhhhHHHhhcccccC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASM--NKKVALFDFVTPSQHGTVWGLGGTCVNVGC-IPKKLFHRASLLNEEATTSDNFG  190 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~g  190 (296)
                      ...||+|||||++|++||.+|++.  |.+|+|||  +.+      .++-    ..| +|.           .     ..+
T Consensus        35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie--~~~------~~~~----~~~~lp~-----------~-----~~g   86 (588)
T 3ics_A           35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVE--RGE------YISF----ANCGLPY-----------Y-----IGG   86 (588)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEEC--SSS------CSSB----CGGGHHH-----------H-----HTT
T ss_pred             cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEE--CCC------Cccc----cCCCCch-----------h-----hcC
Confidence            456999999999999999999998  89999999  544      2221    000 000           0     000


Q ss_pred             ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceE-EEE--eCCEEEE----cceeEEEEeCeEEEcCCCCC
Q psy7665         191 FHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA-VFV--DKHRVKF----AGEERTVSAQNFIIAVGGRP  263 (296)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~--~~~~v~v----~g~~~~~~a~~vV~AtG~~p  263 (296)
                      ..    .....          .+...+....+..++++..+.. ...  ..+.+.+    ++....+.+|+||+|||++|
T Consensus        87 ~~----~~~~~----------~~~~~~~~~~~~~gi~v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p  152 (588)
T 3ics_A           87 VI----TERQK----------LLVQTVERMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKP  152 (588)
T ss_dssp             SS----CCGGG----------GBSSCHHHHHHHTTCEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred             cC----CChHH----------hhccCHHHHHHhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCC
Confidence            00    00000          0001112223455888865433 222  3455665    24345789999999999999


Q ss_pred             CCCCCCCC-c-cceeecc--cC---------CCCCCcEEEeecc
Q psy7665         264 TYPDIPGA-R-LLRTLSL--LS---------GVDPPTLIFLEHI  294 (296)
Q Consensus       264 ~~p~i~G~-~-~~~~~s~--~~---------~~~~~~~~~~~~~  294 (296)
                      ..|++||. + ..++++.  ..         ...+++++|++.+
T Consensus       153 ~~p~i~G~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG  196 (588)
T 3ics_A          153 IVPSIPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGG  196 (588)
T ss_dssp             CCCCCTTTTTCTTEEECSSHHHHHHHHHHHHHHCCSEEEEECCS
T ss_pred             CCCCCCCcccCCCeEEeCCHHHHHHHHHHHhhcCCCeEEEECCC
Confidence            99999998 3 3344331  11         1457788888754

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=99.16  E-value=1.9e-11  Score=110.63  Aligned_cols=114  Identities=15%  Similarity=0.179  Sum_probs=73.5

Q ss_pred             ccEEEECCChHHHHHHHHHHh---CCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcc
Q psy7665         116 YDLCVIGGGSGGISAAKEAAS---MNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFH  192 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~---~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~  192 (296)
                      .||+|||||++|+++|.+|++   .|++|+|||  +.+      ..+...    +.+.                ...+..
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie--~~~------~~~~~~----~~~~----------------~~~~~~   53 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVIN--KSR------FSYFRP----ALPH----------------VAIGVR   53 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEE--SSS------EEEECC----SSCC----------------CCSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEe--CCC------Cceecc----chhh----------------cccCCc
Confidence            389999999999999999999   899999999  444      221110    0000                000000


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEe--CCEEEE-cc--eeEEEEeCeEEEcCCCCCCCCC
Q psy7665         193 MKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVD--KHRVKF-AG--EERTVSAQNFIIAVGGRPTYPD  267 (296)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~v~v-~g--~~~~~~a~~vV~AtG~~p~~p~  267 (296)
                           +..++           ...+...+++.+++++.+++...+  ...|++ ++  +..++.||+||+|||++|..|+
T Consensus        54 -----~~~~~-----------~~~~~~~~~~~gv~~~~~~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~~  117 (409)
T 3h8l_A           54 -----DVDEL-----------KVDLSEALPEKGIQFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATEL  117 (409)
T ss_dssp             -----CCCCE-----------EEEHHHHTGGGTCEEEECEEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEECGGG
T ss_pred             -----CHHHH-----------HHHHHHHHhhCCeEEEEeeEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCcCccC
Confidence                 00000           111233445568999887665443  346766 33  2356899999999999999999


Q ss_pred             CCCCcc
Q psy7665         268 IPGARL  273 (296)
Q Consensus       268 i~G~~~  273 (296)
                      +||.++
T Consensus       118 ipG~~~  123 (409)
T 3h8l_A          118 VKGWDK  123 (409)
T ss_dssp             SBTHHH
T ss_pred             CCChhh
Confidence            999875

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.15  E-value=1.1e-10  Score=108.41  Aligned_cols=136  Identities=17%  Similarity=0.184  Sum_probs=82.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..+||+|||||++|+++|++|++. ++|+|||  +.+      .+||.+.....                   ..++++.
T Consensus       107 ~~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie--~~~------~~GG~~~~~~~-------------------~~~g~~~  158 (493)
T 1y56_A          107 VVVDVAIIGGGPAGIGAALELQQY-LTVALIE--ERG------WLGGDMWLKGI-------------------KQEGFNK  158 (493)
T ss_dssp             EEESCCEECCSHHHHHHHHHHTTT-CCEEEEC--TTS------SSSCSGGGTCS-------------------EETTTTE
T ss_pred             ccCCEEEECccHHHHHHHHHHHhc-CCEEEEe--CCC------CCCCeeecccc-------------------ccCCCCC
Confidence            457999999999999999999999 9999999  665      67776543210                   1112110


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEE---EeCCEEEE----cceeEEEEeCeEEEcCCCCCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVF---VDKHRVKF----AGEERTVSAQNFIIAVGGRPTYP  266 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~v~v----~g~~~~~~a~~vV~AtG~~p~~p  266 (296)
                          ...++           ...+...+ ..+++++......   .....+.+    +++...+.+|++|+|||+.|+.|
T Consensus       159 ----~~~~~-----------~~~l~~~l-~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~  222 (493)
T 1y56_A          159 ----DSRKV-----------VEELVGKL-NENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTM  222 (493)
T ss_dssp             ----EHHHH-----------HHHHHHTC-CTTEEEETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEECCC
T ss_pred             ----CHHHH-----------HHHHHHHH-hcCCEEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCccCC
Confidence                11111           11122222 4578876654321   12222222    34334789999999999999999


Q ss_pred             CCCCCcc-ceeec--------ccCCCCCCcEEEeec
Q psy7665         267 DIPGARL-LRTLS--------LLSGVDPPTLIFLEH  293 (296)
Q Consensus       267 ~i~G~~~-~~~~s--------~~~~~~~~~~~~~~~  293 (296)
                      ++||.+. .+++.        .+.....++.+++..
T Consensus       223 ~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~vvViGg  258 (493)
T 1y56_A          223 LFENNDMPGVFRRDFALEVMNVWEVAPGRKVAVTGS  258 (493)
T ss_dssp             CCTTTTSTTEEEHHHHHHHHHTSCBCSCSEEEEEST
T ss_pred             CCCCCCCCCEEEcHHHHHHHHhcccCCCCEEEEECC
Confidence            9999763 34442        112233456666654

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=99.14  E-value=1.3e-10  Score=109.66  Aligned_cols=32  Identities=31%  Similarity=0.401  Sum_probs=30.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..|||+|||||++|++||..|++.|.+|+|+|
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIE   51 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLIT   51 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEE
Confidence            46899999999999999999999999999999

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.12  E-value=3.7e-10  Score=103.47  Aligned_cols=144  Identities=22%  Similarity=0.348  Sum_probs=76.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCccccc--CCeeeccC-CCchhHHHH-------------hh
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGL--GGTCVNVG-CIPKKLFHR-------------AS  177 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~--GG~~~~~~-~~p~~~~~~-------------~~  177 (296)
                      +.+||+|||||++|+++|+.|++.|.+|+|+|  +.+.+|.+...  ||.|.... +.+..++..             ..
T Consensus        25 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~llE--k~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (447)
T 2i0z_A           25 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLD--KGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIF  102 (447)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEC--SSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCCEEEEE--CCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhc
Confidence            56899999999999999999999999999999  66655554322  23332211 111111110             00


Q ss_pred             hhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceE-E-E-EeCCE---EEE-cceeEEE
Q psy7665         178 LLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA-V-F-VDKHR---VKF-AGEERTV  250 (296)
Q Consensus       178 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~-~-~~~~~---v~v-~g~~~~~  250 (296)
                      .......++..+|+++...... .+.. .......+...+...+++.|++++.++. . . .+...   |++ +|  ..+
T Consensus       103 ~~~~~~~~~~~~G~~~~~~~~g-~~~p-~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G--~~i  178 (447)
T 2i0z_A          103 NNEDIITFFENLGVKLKEEDHG-RMFP-VSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTG--EVL  178 (447)
T ss_dssp             CHHHHHHHHHHTTCCEEECGGG-EEEE-TTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTC--CEE
T ss_pred             CHHHHHHHHHhcCCceEEeeCC-EEEC-CCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCC--CEE
Confidence            0111222222333322110000 0000 0000123334455666778999986532 2 1 23333   444 44  368


Q ss_pred             EeCeEEEcCCCCC
Q psy7665         251 SAQNFIIAVGGRP  263 (296)
Q Consensus       251 ~a~~vV~AtG~~p  263 (296)
                      .||.||+|+|..+
T Consensus       179 ~Ad~VVlAtGg~s  191 (447)
T 2i0z_A          179 ETNHVVIAVGGKS  191 (447)
T ss_dssp             ECSCEEECCCCSS
T ss_pred             ECCEEEECCCCCc
Confidence            9999999999876

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.11  E-value=2e-10  Score=91.90  Aligned_cols=109  Identities=21%  Similarity=0.206  Sum_probs=65.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKK  195 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~  195 (296)
                      +||+|||||++|+++|..|++.|.+|+|+|  +.+      ..-..+...                    ....+++.  
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie--~~~------~~~~~~~~~--------------------~~~~~~~~--   51 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLD--GGR------SKVKGVSRV--------------------PNYPGLLD--   51 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEE--CSC------CTTTTCSCC--------------------CCSTTCTT--
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEe--CCC------CcccCchhh--------------------hccCCCcC--
Confidence            699999999999999999999999999999  433      000000000                    00011110  


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEE--eCC--EEEEcceeEEEEeCeEEEcCCCCCCCCC
Q psy7665         196 SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFV--DKH--RVKFAGEERTVSAQNFIIAVGGRPTYPD  267 (296)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~--~v~v~g~~~~~~a~~vV~AtG~~p~~p~  267 (296)
                      ......           +...+.+.+++.+++++.++....  +..  .++++++  ++.+|.||+|+|.+|..+.
T Consensus        52 ~~~~~~-----------~~~~l~~~~~~~gv~v~~~~v~~i~~~~~~~~v~~~~g--~i~ad~vI~A~G~~~~~~~  114 (180)
T 2ywl_A           52 EPSGEE-----------LLRRLEAHARRYGAEVRPGVVKGVRDMGGVFEVETEEG--VEKAERLLLCTHKDPTLPS  114 (180)
T ss_dssp             CCCHHH-----------HHHHHHHHHHHTTCEEEECCCCEEEECSSSEEEECSSC--EEEEEEEEECCTTCCHHHH
T ss_pred             CCCHHH-----------HHHHHHHHHHHcCCEEEeCEEEEEEEcCCEEEEEECCC--EEEECEEEECCCCCCCccc
Confidence            111222           223344556677999877633222  222  3333442  7899999999999885433

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.11  E-value=1.2e-09  Score=103.13  Aligned_cols=38  Identities=34%  Similarity=0.482  Sum_probs=34.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHG  153 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g  153 (296)
                      ..+||+|||||++|+++|+.|+++|.+|+|+|  +.+..|
T Consensus       125 ~~~DVvVVGaG~aGl~aA~~la~~G~~V~vlE--k~~~~g  162 (571)
T 1y0p_A          125 DTVDVVVVGSGGAGFSAAISATDSGAKVILIE--KEPVIG  162 (571)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEC--SSSSSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEe--CCCCCC
Confidence            46899999999999999999999999999999  666444

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.10  E-value=7.4e-10  Score=95.33  Aligned_cols=35  Identities=37%  Similarity=0.566  Sum_probs=32.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC-CCcEEEEeccCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASM-NKKVALFDFVTPS  150 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~-G~~V~iiE~~~~~  150 (296)
                      ..+||+|||||++|+++|+.|++. |.+|+|+|  +.+
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viE--k~~   73 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIE--QSV   73 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEE--SSS
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEE--CCC
Confidence            457999999999999999999997 99999999  555

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=99.09  E-value=2.1e-11  Score=111.19  Aligned_cols=112  Identities=24%  Similarity=0.369  Sum_probs=70.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC--CcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMN--KKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      .+|||||||++|+++|.+|++.+  .+|+|||  +.+      ..       .+.|.......             |.  
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~--~~~------~~-------~~~p~l~~v~~-------------g~--   52 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLIS--DRP------YF-------GFTPAFPHLAM-------------GW--   52 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEEC--SSS------EE-------ECGGGHHHHHH-------------TC--
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEc--CCC------CC-------ccCccHHHHhc-------------CC--
Confidence            37999999999999999999876  7899999  443      10       01111000000             00  


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEe--CCEEEE-cceeEEEEeCeEEEcCCCCCCCCCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVD--KHRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPG  270 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~i~G  270 (296)
                         .+.           +++...+...+++.+++++.+++..++  .+.|++ +|  .++.||++|+|||+++. +++||
T Consensus        53 ---~~~-----------~~i~~~~~~~~~~~gv~~i~~~v~~Id~~~~~V~~~~g--~~i~YD~LViAtG~~~~-~~i~G  115 (430)
T 3hyw_A           53 ---RKF-----------EDISVPLAPLLPKFNIEFINEKAESIDPDANTVTTQSG--KKIEYDYLVIATGPKLV-FGAEG  115 (430)
T ss_dssp             ---SCG-----------GGSEEESTTTGGGGTEEEECSCEEEEETTTTEEEETTC--CEEECSEEEECCCCEEE-CCSBT
T ss_pred             ---CCH-----------HHhhhcHHHHHHHCCcEEEEeEEEEEECCCCEEEECCC--CEEECCEEEEeCCCCcc-CCccC
Confidence               000           000001122345568999988876654  457777 56  57999999999999864 56898


Q ss_pred             Cccc
Q psy7665         271 ARLL  274 (296)
Q Consensus       271 ~~~~  274 (296)
                      .++.
T Consensus       116 ~~e~  119 (430)
T 3hyw_A          116 QEEN  119 (430)
T ss_dssp             HHHH
T ss_pred             cccC
Confidence            7643

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.09  E-value=6.4e-11  Score=118.82  Aligned_cols=114  Identities=19%  Similarity=0.337  Sum_probs=73.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCC-cEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNK-KVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFH  192 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~  192 (296)
                      .++||+||||||+|+++|.+|+++|+ +|+|||  +.+      .+||.+..  .+|.                  +.. 
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E--~~~------~~GG~~~~--~ip~------------------~~~-  236 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLGYSDITIFE--KQE------YVGGLSTS--EIPQ------------------FRL-  236 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEE--SSS------SCSTHHHH--TSCT------------------TTS-
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEe--CCC------CCCccccc--cCCc------------------ccC-
Confidence            46799999999999999999999999 799999  655      67885311  1111                  111 


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE-cceeEEEEeCeEEEcCCC-CCCCCCC-C
Q psy7665         193 MKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF-AGEERTVSAQNFIIAVGG-RPTYPDI-P  269 (296)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v-~g~~~~~~a~~vV~AtG~-~p~~p~i-~  269 (296)
                           .. ...           ......+++.|++++.++..  ..+.+++ ++  ..+.||+||+|||+ +|+.+++ +
T Consensus       237 -----~~-~~~-----------~~~~~~~~~~gv~~~~~~~v--~~~~v~~~~~--~~~~~d~vvlAtGa~~p~~l~~~~  295 (1025)
T 1gte_A          237 -----PY-DVV-----------NFEIELMKDLGVKIICGKSL--SENEITLNTL--KEEGYKAAFIGIGLPEPKTDDIFQ  295 (1025)
T ss_dssp             -----CH-HHH-----------HHHHHHHHTTTCEEEESCCB--STTSBCHHHH--HHTTCCEEEECCCCCEECCCGGGT
T ss_pred             -----CH-HHH-----------HHHHHHHHHCCcEEEcccEe--ccceEEhhhc--CccCCCEEEEecCCCCCCCCCCCC
Confidence                 10 111           11134556779998876532  1223444 33  24679999999998 5877664 4


Q ss_pred             CCc--cceee
Q psy7665         270 GAR--LLRTL  277 (296)
Q Consensus       270 G~~--~~~~~  277 (296)
                      |.+  ..+++
T Consensus       296 G~~~~~gv~~  305 (1025)
T 1gte_A          296 GLTQDQGFYT  305 (1025)
T ss_dssp             TCCTTTTEEE
T ss_pred             CCCCCCCEEE
Confidence            653  33444

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.09  E-value=3.5e-10  Score=104.30  Aligned_cols=150  Identities=19%  Similarity=0.254  Sum_probs=81.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcc-cccCCee--eccCCCchhHHHHh-----------------
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTV-WGLGGTC--VNVGCIPKKLFHRA-----------------  176 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~-~~~GG~~--~~~~~~p~~~~~~~-----------------  176 (296)
                      ||+|||||++|+++|++|++.|.+|+|+|+  ....|.+ +..||.+  .+..+.|...+...                 
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek--~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~   78 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISK--RIDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVT   78 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeC--CCCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHH
Confidence            799999999999999999999999999994  3323332 2335543  33345554433211                 


Q ss_pred             hhhHHHhhcccccCccccc------cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcce-EEE-EeCCEE---EEcc
Q psy7665         177 SLLNEEATTSDNFGFHMKK------SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK-AVF-VDKHRV---KFAG  245 (296)
Q Consensus       177 ~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~-~~~~~v---~v~g  245 (296)
                      ......+.++..+|++++.      ...++............+...+.+.+++.+++++.++ +.. .+...+   .+..
T Consensus        79 ~~~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v~l~~~~~~v~Gv~v~~  158 (472)
T 2e5v_A           79 SEAKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLVEIRVKDGKVTGFVTEK  158 (472)
T ss_dssp             HHHHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEEEEEEETTEEEEEEETT
T ss_pred             HHHHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEEEEEEeCCEEEEEEEEe
Confidence            0112233444445544321      0000000000000112233344555566799998764 322 233443   3421


Q ss_pred             eeEEEEeCeEEEcCCCCCCCCCC
Q psy7665         246 EERTVSAQNFIIAVGGRPTYPDI  268 (296)
Q Consensus       246 ~~~~~~a~~vV~AtG~~p~~p~i  268 (296)
                      ....+.||.||+|||+.+..+++
T Consensus       159 ~~g~~~a~~VVlAtGg~~~~~~~  181 (472)
T 2e5v_A          159 RGLVEDVDKLVLATGGYSYLYEY  181 (472)
T ss_dssp             TEEECCCSEEEECCCCCGGGSSS
T ss_pred             CCCeEEeeeEEECCCCCcccCcc
Confidence            22457799999999987766544

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=99.09  E-value=1.8e-10  Score=107.06  Aligned_cols=57  Identities=19%  Similarity=0.191  Sum_probs=39.2

Q ss_pred             CEEEE----cceeEEEEeCeEEEcCCCCCCCCCCCCCccceeec-ccC---------CCCCCcEEEeeccC
Q psy7665         239 HRVKF----AGEERTVSAQNFIIAVGGRPTYPDIPGARLLRTLS-LLS---------GVDPPTLIFLEHIS  295 (296)
Q Consensus       239 ~~v~v----~g~~~~~~a~~vV~AtG~~p~~p~i~G~~~~~~~s-~~~---------~~~~~~~~~~~~~~  295 (296)
                      |.|++    +++..++.|+.||+|||..|.+|.+++....+++| .|.         ....++.+||+.++
T Consensus       186 ~~V~~~~~~~g~~~~~~ar~vVlatG~~P~iP~~~~~~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~  256 (501)
T 4b63_A          186 FTVRSRNVETGEISARRTRKVVIAIGGTAKMPSGLPQDPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQ  256 (501)
T ss_dssp             EEEEEEETTTCCEEEEEEEEEEECCCCEECCCTTSCCCTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSH
T ss_pred             EEEEEecCCCceEEEEEeCEEEECcCCCCCCCCCCCCCcceeeccccccchhhccccccCCcEEEEECCcH
Confidence            56666    34457899999999999999998876655555555 221         23455688887653

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=99.08  E-value=3.3e-11  Score=108.76  Aligned_cols=112  Identities=23%  Similarity=0.281  Sum_probs=71.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC--CcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMN--KKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      .+|||||||++|+++|.+|++.+  .+|+|||  +.+      ....     .+....+..               +.  
T Consensus         3 KkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie--~~~------~~~~-----~p~~~~v~~---------------g~--   52 (401)
T 3vrd_B            3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIE--PNE------TYYT-----CYMSNEVIG---------------GD--   52 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEEC--SCS------SEEC-----STTHHHHHH---------------TS--
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcCCeEEEEe--CCC------CCCC-----ccCHHHHhc---------------CC--
Confidence            47999999999999999999876  5899999  433      1100     011000000               00  


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEe--CCEEEE-cceeEEEEeCeEEEcCCCCCCCCCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVD--KHRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPG  270 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~i~G  270 (296)
                         .+...+.       ..     ...+...+++++.+++..++  .+.+.+ ++  .++.||++|+|||+++..+++||
T Consensus        53 ---~~~~~~~-------~~-----~~~~~~~gv~~i~~~v~~id~~~~~v~~~~g--~~i~yd~LviAtG~~~~~~~i~G  115 (401)
T 3vrd_B           53 ---RELASLR-------VG-----YDGLRAHGIQVVHDSALGIDPDKKLVKTAGG--AEFAYDRCVVAPGIDLLYDKIEG  115 (401)
T ss_dssp             ---SCGGGGE-------EC-----SHHHHHTTCEEECSCEEEEETTTTEEEETTS--CEEECSEEEECCCEEECGGGSBT
T ss_pred             ---CCHHHHh-------hC-----HHHHHHCCCEEEEeEEEEEEccCcEEEeccc--ceeecceeeeccCCccccCCccC
Confidence               0000000       00     11234468999988876654  345666 55  67999999999999999999999


Q ss_pred             Cccc
Q psy7665         271 ARLL  274 (296)
Q Consensus       271 ~~~~  274 (296)
                      .++.
T Consensus       116 ~~e~  119 (401)
T 3vrd_B          116 YSEA  119 (401)
T ss_dssp             CCSG
T ss_pred             chhh
Confidence            8754

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.07  E-value=2e-11  Score=117.81  Aligned_cols=161  Identities=12%  Similarity=0.002  Sum_probs=101.6

Q ss_pred             CCCChHHHH-HHHHHhhcCCCCceeeccceeeeeeeccccCC--------ccchhhhccC--cceeeccccCCCCccccE
Q psy7665          50 IHPTCAEAI-SLSWIKGYNIEPEVIKLHTPYLVLAKARFLLP--------TLECQEVYHD--GRFYDYLDNNFQTYDYDL  118 (296)
Q Consensus        50 ~~pt~~e~l-~v~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~--------~~~~~~~~~~--~~~~~~~~~~~~~~~~dV  118 (296)
                      ++....+.+ ++.+++++.++.+....+.+|.+++++|..+.        .++.++....  ....+.+... ...+.+|
T Consensus       448 ~~~~~~~~~~gv~~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~~~~v~~~~~~l~~~-~~~g~~V  526 (690)
T 3k30_A          448 YREAVLAELPNVEIYRESPMTGDDIVEFGFEHVITATGATWRTDGVARFHTTALPIAEGMQVLGPDDLFAGR-LPDGKKV  526 (690)
T ss_dssp             HHHHHHHTCTTEEEESSCCCCHHHHHHTTCCEEEECCCEEECSSCCSSSCSSCCCBCTTSEEECHHHHHTTC-CCSSSEE
T ss_pred             HHHHHHHHcCCCEEEECCeecHHHHhhcCCCEEEEcCCCccccccccccCCCCCCCCCCCcEEcHHHHhCCC-CCCCCEE
Confidence            333333443 55566677888887788899999999998732        2333322211  1112233322 2234579


Q ss_pred             EEEC--CChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccccc
Q psy7665         119 CVIG--GGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKS  196 (296)
Q Consensus       119 vVIG--gG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~  196 (296)
                      +|||  +|..|+++|..|++.|.+|++++  +.+      .+...                                   
T Consensus       527 vViG~ggG~~g~e~A~~L~~~g~~Vtlv~--~~~------~l~~~-----------------------------------  563 (690)
T 3k30_A          527 VVYDDDHYYLGGVVAELLAQKGYEVSIVT--PGA------QVSSW-----------------------------------  563 (690)
T ss_dssp             EEEECSCSSHHHHHHHHHHHTTCEEEEEE--SSS------STTGG-----------------------------------
T ss_pred             EEEcCCCCccHHHHHHHHHhCCCeeEEEe--ccc------ccccc-----------------------------------
Confidence            9999  99999999999999999999999  443      11110                                   


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceE-EEEeCCEEEE----cceeEEEEeCeEEEcCCCCCCC
Q psy7665         197 FTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA-VFVDKHRVKF----AGEERTVSAQNFIIAVGGRPTY  265 (296)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~v~v----~g~~~~~~a~~vV~AtG~~p~~  265 (296)
                      ...           ......+...+++.||+++.++. ..+....+.+    +++..++.+|.||+|+|.+|+.
T Consensus       564 ~~~-----------~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~~~~~~~~~~i~aD~VV~A~G~~p~~  626 (690)
T 3k30_A          564 TNN-----------TFEVNRIQRRLIENGVARVTDHAVVAVGAGGVTVRDTYASIERELECDAVVMVTARLPRE  626 (690)
T ss_dssp             GGG-----------GTCHHHHHHHHHHTTCEEEESEEEEEEETTEEEEEETTTCCEEEEECSEEEEESCEEECC
T ss_pred             ccc-----------chhHHHHHHHHHHCCCEEEcCcEEEEEECCeEEEEEccCCeEEEEECCEEEECCCCCCCh
Confidence            000           00122345566778999988754 3344455444    3444679999999999988764

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.06  E-value=7.6e-10  Score=104.39  Aligned_cols=40  Identities=28%  Similarity=0.401  Sum_probs=34.8

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCc
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGT  154 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~  154 (296)
                      +..+||+|||||++|+++|+.|+++|.+|+|||  +.+..|.
T Consensus       119 ~~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlE--k~~~~gg  158 (566)
T 1qo8_A          119 SETTQVLVVGAGSAGFNASLAAKKAGANVILVD--KAPFSGG  158 (566)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEEC--SSSSSCT
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEe--CCCCCCC
Confidence            367899999999999999999999999999999  5554443

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.06  E-value=3.3e-09  Score=93.90  Aligned_cols=32  Identities=31%  Similarity=0.426  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      .+||+|||||++|+++|++|+++|++|+|+|+
T Consensus         4 ~~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~   35 (369)
T 3dme_A            4 DIDCIVIGAGVVGLAIARALAAGGHEVLVAEA   35 (369)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeC
Confidence            47999999999999999999999999999993

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=99.05  E-value=1.7e-10  Score=107.11  Aligned_cols=32  Identities=22%  Similarity=0.355  Sum_probs=29.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ...+|||||||++|+.+|.+|++.+++|+|||
T Consensus        41 ~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId   72 (502)
T 4g6h_A           41 DKPNVLILGSGWGAISFLKHIDTKKYNVSIIS   72 (502)
T ss_dssp             SSCEEEEECSSHHHHHHHHHSCTTTCEEEEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHhhhCCCcEEEEC
Confidence            34589999999999999999999999999999

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.05  E-value=2.9e-09  Score=99.20  Aligned_cols=38  Identities=32%  Similarity=0.479  Sum_probs=33.9

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCC
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQH  152 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~  152 (296)
                      +..+||||||||++|+++|++|+++|.+|+|+|  +.+..
T Consensus        39 ~~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlE--k~~~~   76 (510)
T 4at0_A           39 DYEADVVVAGYGIAGVAASIEAARAGADVLVLE--RTSGW   76 (510)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEC--SSSSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEe--CCCCC
Confidence            356899999999999999999999999999999  55533

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.05  E-value=4.4e-10  Score=104.34  Aligned_cols=135  Identities=16%  Similarity=0.092  Sum_probs=74.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..+||+|||||++|+++|..|++.|.+|+|||  +.+      .+|+ +....+.|............  .....+....
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE--k~~------~~g~-~~~~~~~~~~~~~l~~~g~~--~~~~~~~~~~  159 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVE--KRI------KFSR-HNVLHLWPFTIHDLRALGAK--KFYGRFCTGT  159 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEE--SCS------SCCC-CCEEECCHHHHHHHHTTTHH--HHCTTTTCTT
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCeEEEEE--ecc------ccCC-CCcccCChhHHHHHHHcCCc--cccccccccc
Confidence            56799999999999999999999999999999  555      3333 22222333211111000000  0000110000


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceE-EEEe-------CCEEEE--c-ce-eEEEEeCeEEEcCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA-VFVD-------KHRVKF--A-GE-ERTVSAQNFIIAVGG  261 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~-------~~~v~v--~-g~-~~~~~a~~vV~AtG~  261 (296)
                      -..++.           ..+...+.+.+++.|++++.++. ....       ...+++  . ++ ..++.||+||+|+|.
T Consensus       160 ~~~~~~-----------~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~  228 (497)
T 2bry_A          160 LDHISI-----------RQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGG  228 (497)
T ss_dssp             CCEEEH-----------HHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCT
T ss_pred             cccCCH-----------HHHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCC
Confidence            001111           22233445556667999877643 2221       234555  2 21 246899999999999


Q ss_pred             CCCCCCCCC
Q psy7665         262 RPTYPDIPG  270 (296)
Q Consensus       262 ~p~~p~i~G  270 (296)
                      ++....+.+
T Consensus       229 ~S~~r~~~~  237 (497)
T 2bry_A          229 KFVPEGFTI  237 (497)
T ss_dssp             TCCCTTCEE
T ss_pred             Ccccccccc
Confidence            876654443

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.03  E-value=1.2e-09  Score=98.83  Aligned_cols=33  Identities=30%  Similarity=0.354  Sum_probs=30.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ..+||+|||||++|+++|+.|+++|.+|+|+|+
T Consensus         4 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~   36 (421)
T 3nix_A            4 EKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEK   36 (421)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEECS
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCCCEEEEeC
Confidence            357999999999999999999999999999993

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=99.01  E-value=1.9e-09  Score=101.06  Aligned_cols=32  Identities=28%  Similarity=0.462  Sum_probs=30.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ..+||+|||||++|+++|++|++ |.+|+|+|+
T Consensus         7 ~~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk   38 (540)
T 1chu_A            7 HSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSK   38 (540)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTT-TSCEEEECS
T ss_pred             CCCCEEEECccHHHHHHHHHHhc-CCcEEEEEC
Confidence            46799999999999999999999 999999993

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.99  E-value=1.7e-09  Score=102.73  Aligned_cols=33  Identities=24%  Similarity=0.356  Sum_probs=31.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ..+||||||||++|++||+.|++.|.+|+|+|+
T Consensus        17 ~~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK   49 (621)
T 2h88_A           17 HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTK   49 (621)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             ccCCEEEECccHHHHHHHHHHHHCCCcEEEEec
Confidence            457999999999999999999999999999994

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.99  E-value=7.3e-10  Score=103.58  Aligned_cols=32  Identities=25%  Similarity=0.205  Sum_probs=30.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..+||+|||||++|+++|+.|++.|++|+|+|
T Consensus       106 ~~~DVVIVGgGpaGL~aA~~La~~G~kV~VlE  137 (549)
T 3nlc_A          106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVE  137 (549)
T ss_dssp             CCCCCEEECCSHHHHHHHHHHHHTTCCCEEEC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEE
Confidence            45899999999999999999999999999999

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.98  E-value=3.8e-10  Score=105.51  Aligned_cols=61  Identities=39%  Similarity=0.493  Sum_probs=42.2

Q ss_pred             cceee-cCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665           3 LPKLG-GSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI   63 (296)
Q Consensus         3 ~~~~~-~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~   63 (296)
                      +|+|+ +++|++|||+|++|++|+|+|+.+++||+++++.++|.+++++|||++|.+.....
T Consensus       461 vKli~~~~~t~~ILGa~ivG~~A~ElI~~~alAi~~~~t~~dl~~~i~~HPTlsE~l~~~~~  522 (542)
T 4b1b_A          461 AKLVCLKNEDNRVIGFHYVGPNAGEVTQGMALALRLKVKKKDFDNCIGIHPTDAESFMNLFV  522 (542)
T ss_dssp             EEEEEETTTTTBEEEEEEESTTHHHHHHHHHHHHHTCCBHHHHHHC----------------
T ss_pred             EEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhccCCcCCCHHHHHHHHHH
Confidence            56674 77899999999999999999999999999999999999999999999999876543

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.97  E-value=5.9e-10  Score=97.81  Aligned_cols=35  Identities=23%  Similarity=0.505  Sum_probs=32.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC--CCcEEEEeccCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASM--NKKVALFDFVTPS  150 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~~~~~  150 (296)
                      ..+||+|||||++|+.+|++|+++  |++|+|+|  +..
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiE--k~~  114 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVE--AGV  114 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEE--SSS
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEe--CCC
Confidence            468999999999999999999997  99999999  555

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.96  E-value=3.5e-09  Score=99.77  Aligned_cols=142  Identities=13%  Similarity=0.010  Sum_probs=93.6

Q ss_pred             CcceeecCCCCeEEEEEEEcCCh-hHHHHHHHHHHHcCCCHHHHccCcCCC-CChHHHH---HHH--------HHhhcCC
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNA-GEITQGYALGVMLGAYKQDFDALIGIH-PTCAEAI---SLS--------WIKGYNI   68 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a-~e~i~~~~~~~~~~~~k~~l~~~i~~~-pt~~e~l---~v~--------~~~~~~~   68 (296)
                      .+|+|+|+++++|||+|++|++| +|+|+.++++|+++++.++|.++++.| |++++..   ...        ......+
T Consensus       396 ~~k~v~~~~~~~ilG~~~~g~~a~~e~i~~~~~ai~~~~~~~~l~~~~~~~~P~~~~~~~~i~~aa~~~~~~~~~~~~~i  475 (565)
T 3ntd_A          396 SFKLLFDPVKGTIFGAQAVGKDGIDKRIDVMAVAQRAGMTVEQLQHLELSYAPPYGSAKDVINQAAFVASNIIKGDATPI  475 (565)
T ss_dssp             EEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBHHHHTTCCCCCCTTTCCSSCHHHHHHHHHHHHHHTSCCEE
T ss_pred             EEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCHHHHhhhhhccCcccCchhhhhhhhhhhhhhcccccccee
Confidence            37999999999999999999999 999999999999999999999998644 8764322   111        1112346


Q ss_pred             CCceeeccceeeeeeeccccCCccc--hhhh--ccCcceeeccccCCCCccccEEE-ECCChHHHHHHHHHHhCCCcEEE
Q psy7665          69 EPEVIKLHTPYLVLAKARFLLPTLE--CQEV--YHDGRFYDYLDNNFQTYDYDLCV-IGGGSGGISAAKEAASMNKKVAL  143 (296)
Q Consensus        69 ~~~~~~~~~p~~v~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~dVvV-IGgG~aG~~aA~~l~~~G~~V~i  143 (296)
                      +++.+....++.+++..+.......  +++.  -+...+.+.+..-  +.+..|+| ..+|.-...+|..|.+.|++|..
T Consensus       476 ~~~~~~~~~~~~~~iDvR~~~e~~~~~i~ga~~ip~~~l~~~~~~~--~~~~~iv~~c~~g~rs~~a~~~l~~~G~~v~~  553 (565)
T 3ntd_A          476 HFDQIDNLSEDQLLLDVRNPGELQNGGLEGAVNIPVDELRDRMHEL--PKDKEIIIFSQVGLRGNVAYRQLVNNGYRARN  553 (565)
T ss_dssp             CTTTTTSCCTTEEEEECSCGGGGGGCCCTTCEECCGGGTTTSGGGS--CTTSEEEEECSSSHHHHHHHHHHHHTTCCEEE
T ss_pred             eHHHHHhCCCCcEEEEeCCHHHHhcCCCCCcEECCHHHHHHHHhhc--CCcCeEEEEeCCchHHHHHHHHHHHcCCCEEE
Confidence            6666666566677777663211111  1110  0111111111111  12224444 47788888899999999999998


Q ss_pred             Ee
Q psy7665         144 FD  145 (296)
Q Consensus       144 iE  145 (296)
                      ++
T Consensus       554 l~  555 (565)
T 3ntd_A          554 LI  555 (565)
T ss_dssp             ET
T ss_pred             Ec
Confidence            88

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.96  E-value=1.2e-09  Score=101.40  Aligned_cols=62  Identities=18%  Similarity=0.095  Sum_probs=58.9

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI   63 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~   63 (296)
                      .+|+|+|++|++|||+|++|++|+|+|+.++++|+++.+.++|.+++++|||++|.+...+.
T Consensus       403 ~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~  464 (492)
T 3ic9_A          403 LLNVYADRTSGEFLGAEMFGPAAEHIGHLLAWARQQQMTVQAMLTMPFYHPVIEEGLRTALR  464 (492)
T ss_dssp             EEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHTTSCCCTTCTHHHHHHHHH
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCCCCCCChHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999987764

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.95  E-value=5.3e-10  Score=93.98  Aligned_cols=40  Identities=35%  Similarity=0.624  Sum_probs=35.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      .+||+||||||+|++||+.|+++|++|+|||  +.+      .+||.+
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~E--k~~------~~GG~~   41 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFD--KSR------GSGGRM   41 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEEC--SSS------SSCGGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEE--CCC------CCCCcc
Confidence            4699999999999999999999999999999  666      667754

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.95  E-value=4.6e-09  Score=99.14  Aligned_cols=39  Identities=31%  Similarity=0.479  Sum_probs=34.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGT  154 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~  154 (296)
                      ..+||+|||+|++|+++|+.|++.|.+|+|+|  +.+..|.
T Consensus       125 ~~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e--~~~~~~~  163 (572)
T 1d4d_A          125 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLE--KEPIPGG  163 (572)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHSSSCCEEEEC--SSSSSCT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEe--cCCCCCc
Confidence            46799999999999999999999999999999  5554443

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.95  E-value=2e-09  Score=101.93  Aligned_cols=33  Identities=30%  Similarity=0.521  Sum_probs=31.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ..+||+|||||++|++||+.|++.|.+|+|+|+
T Consensus         6 ~~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK   38 (588)
T 2wdq_A            6 REFDAVVIGAGGAGMRAALQISQSGQTCALLSK   38 (588)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCcEEEEec
Confidence            468999999999999999999999999999993

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.94  E-value=5.6e-09  Score=93.39  Aligned_cols=34  Identities=29%  Similarity=0.328  Sum_probs=31.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      .+||+|||||++|+++|..|++.|.+|+|+|  +.+
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE--~~~   44 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHE--KSS   44 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEC--SSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEe--cCC
Confidence            4799999999999999999999999999999  444

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.94  E-value=1.2e-09  Score=101.20  Aligned_cols=62  Identities=23%  Similarity=0.296  Sum_probs=59.0

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI   63 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~   63 (296)
                      .+|+|+|++|++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.+...+.
T Consensus       421 ~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~  482 (491)
T 3urh_A          421 FVKILADKETDRVLGGHIIGFGAGEMIHEIAVLMEFGGSSEDLGRTCHAHPTMSEAVKEAAL  482 (491)
T ss_dssp             EEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTTHHHHHHHH
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCccCCCChHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999987764

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.94  E-value=1.2e-09  Score=100.76  Aligned_cols=62  Identities=16%  Similarity=0.289  Sum_probs=59.1

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI   63 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~   63 (296)
                      .+|+|+|++|++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.+...+.
T Consensus       401 ~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~  462 (476)
T 3lad_A          401 FVKVIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSEALHEAAL  462 (476)
T ss_dssp             EEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSCCCSSCSHHHHHHHHH
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCccCCCChHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999987765

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.92  E-value=1.2e-08  Score=93.64  Aligned_cols=134  Identities=16%  Similarity=0.178  Sum_probs=83.8

Q ss_pred             ccceeeeeeeccccCCccchhhhccC--cceeeccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCC
Q psy7665          75 LHTPYLVLAKARFLLPTLECQEVYHD--GRFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQH  152 (296)
Q Consensus        75 ~~~p~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~  152 (296)
                      .+.+|.+|+++|+.+..++.......  ....+.+...  ....+|+|||||++|+++|..|++.|.+|+++|  +.+  
T Consensus       127 ~~~~d~lviAtG~~p~~~~~~g~~~~~v~~~~~~~~~~--~~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~--~~~--  200 (455)
T 2yqu_A          127 ELEARYILIATGSAPLIPPWAQVDYERVVTSTEALSFP--EVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLE--YMD--  200 (455)
T ss_dssp             EEEEEEEEECCCEEECCCTTBCCCSSSEECHHHHTCCS--SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEC--SSS--
T ss_pred             EEEecEEEECCCCCCCCCCCCCCCcCcEechHHhhccc--cCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEe--cCC--
Confidence            46789999999986655544332221  1112222211  123589999999999999999999999999999  433  


Q ss_pred             CcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcce
Q psy7665         153 GTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK  232 (296)
Q Consensus       153 g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  232 (296)
                          .+.         |                          ..+            ..+...+.+.+++.|++++.+.
T Consensus       201 ----~~l---------~--------------------------~~~------------~~~~~~l~~~l~~~Gv~i~~~~  229 (455)
T 2yqu_A          201 ----RIL---------P--------------------------TMD------------LEVSRAAERVFKKQGLTIRTGV  229 (455)
T ss_dssp             ----SSC---------T--------------------------TSC------------HHHHHHHHHHHHHHTCEEECSC
T ss_pred             ----ccc---------c--------------------------ccC------------HHHHHHHHHHHHHCCCEEEECC
Confidence                100         0                          000            1112223445566799998763


Q ss_pred             E-EEE--eCCEEEE---cceeEEEEeCeEEEcCCCCCCCCC
Q psy7665         233 A-VFV--DKHRVKF---AGEERTVSAQNFIIAVGGRPTYPD  267 (296)
Q Consensus       233 ~-~~~--~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~p~  267 (296)
                      . ...  +...+.+   ++  .++.+|.||+|+|.+|+.+.
T Consensus       230 ~V~~i~~~~~~v~v~~~~g--~~i~~D~vv~A~G~~p~~~~  268 (455)
T 2yqu_A          230 RVTAVVPEAKGARVELEGG--EVLEADRVLVAVGRRPYTEG  268 (455)
T ss_dssp             CEEEEEEETTEEEEEETTS--CEEEESEEEECSCEEECCTT
T ss_pred             EEEEEEEeCCEEEEEECCC--eEEEcCEEEECcCCCcCCCC
Confidence            2 222  3334444   34  57899999999999887643

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.92  E-value=9.7e-10  Score=101.12  Aligned_cols=60  Identities=27%  Similarity=0.413  Sum_probs=56.7

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLS   61 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~   61 (296)
                      .+|+|+|++|++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.+...
T Consensus       390 ~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~  449 (463)
T 4dna_A          390 IMKLVVNAADRKVVGAHILGHDAGEMAQLLGISLRAGCTKDDFDRTMAVHPTAAEELVTM  449 (463)
T ss_dssp             EEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSGGGGTCC
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHH
Confidence            479999999999999999999999999999999999999999999999999999987544

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.91  E-value=1.3e-09  Score=100.86  Aligned_cols=60  Identities=32%  Similarity=0.480  Sum_probs=56.4

Q ss_pred             Ccceeec-CCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHH
Q psy7665           2 SLPKLGG-SEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLS   61 (296)
Q Consensus         2 ~~~~~~~-~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~   61 (296)
                      .+|+|+| ++|++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.+...
T Consensus       414 ~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~  474 (488)
T 3dgz_A          414 YIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSEEVVKL  474 (488)
T ss_dssp             EEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSTHHHHTC
T ss_pred             EEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHHHHHHH
Confidence            4789999 58999999999999999999999999999999999999999999999988654

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.91  E-value=1e-09  Score=101.28  Aligned_cols=58  Identities=28%  Similarity=0.503  Sum_probs=55.1

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAIS   59 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~   59 (296)
                      .+|+|+|++|++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.+.
T Consensus       418 ~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~  475 (478)
T 3dk9_A          418 VMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEELV  475 (478)
T ss_dssp             EEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSSSGGGGG
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHH
Confidence            4789999999999999999999999999999999999999999999999999999763

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.91  E-value=8.2e-08  Score=85.37  Aligned_cols=34  Identities=24%  Similarity=0.373  Sum_probs=30.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      ..+||+|||||.+|+++|++|+ +|++|+|+|  +.+
T Consensus         8 ~~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE--~~~   41 (381)
T 3nyc_A            8 IEADYLVIGAGIAGASTGYWLS-AHGRVVVLE--REA   41 (381)
T ss_dssp             EECSEEEECCSHHHHHHHHHHT-TTSCEEEEC--SSS
T ss_pred             CcCCEEEECCcHHHHHHHHHHh-CCCCEEEEE--CCC
Confidence            4679999999999999999999 699999999  544

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.90  E-value=1.1e-09  Score=101.23  Aligned_cols=59  Identities=25%  Similarity=0.318  Sum_probs=55.6

Q ss_pred             CcceeecCC-CCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHH
Q psy7665           2 SLPKLGGSE-VSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISL   60 (296)
Q Consensus         2 ~~~~~~~~~-~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v   60 (296)
                      .+|+|+|++ |++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.+..
T Consensus       414 ~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~  473 (483)
T 3dgh_A          414 YLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTLINTVGIHPTTAEEFTR  473 (483)
T ss_dssp             EEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGG
T ss_pred             EEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHH
Confidence            478999987 89999999999999999999999999999999999999999999997754

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.90  E-value=3.7e-08  Score=94.23  Aligned_cols=33  Identities=27%  Similarity=0.376  Sum_probs=31.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ..+||||||||.+|++||++|++.|.+|+|+|+
T Consensus         4 ~~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK   36 (660)
T 2bs2_A            4 QYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSL   36 (660)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTTTCCEEEECS
T ss_pred             ccccEEEECchHHHHHHHHHHHHCCCcEEEEec
Confidence            457999999999999999999999999999994

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.89  E-value=4e-09  Score=100.06  Aligned_cols=33  Identities=39%  Similarity=0.650  Sum_probs=30.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC--CcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMN--KKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE~  146 (296)
                      ..+||+|||||++|+++|+.|++.|  .+|+|+|+
T Consensus         4 ~~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk   38 (602)
T 1kf6_A            4 FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISK   38 (602)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEES
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeC
Confidence            4579999999999999999999999  99999994

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.89  E-value=2.3e-10  Score=106.18  Aligned_cols=135  Identities=19%  Similarity=0.240  Sum_probs=72.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC--CCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASM--NKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGF  191 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~  191 (296)
                      ..+||+|||||++|++||..|++.  |.+|+|||  +.+      ..+    +..|.+++.+...... .........++
T Consensus        10 ~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie--~~~------~~~----y~r~~lsk~l~~~~~~-~~~~~~~~~~~   76 (493)
T 1m6i_A           10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVS--EDP------ELP----YMRPPLSKELWFSDDP-NVTKTLRFKQW   76 (493)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEE--SSS------SCC----BCSGGGGTGGGCC--C-THHHHCEEECT
T ss_pred             CcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEe--CCC------CCC----CCCCCCCHHhhcCCcc-chhhccccccc
Confidence            457999999999999999999887  88999999  444      222    1122233322221110 00001111122


Q ss_pred             cccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcc-eEEEEe--CCEEEE-cceeEEEEeCeEEEcCCCCCCCC
Q psy7665         192 HMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA-KAVFVD--KHRVKF-AGEERTVSAQNFIIAVGGRPTYP  266 (296)
Q Consensus       192 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~--~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p  266 (296)
                      +... .+.+.....+. . .+.+     ..+.+.+++++.+ .+..++  .+.|++ +|  .++.||+||+|||++|+.|
T Consensus        77 ~~~~~~~~~~~~~~~~-~-~~~l-----~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g--~~i~yd~lviATGs~p~~~  147 (493)
T 1m6i_A           77 NGKERSIYFQPPSFYV-S-AQDL-----PHIENGGVAVLTGKKVVQLDVRDNMVKLNDG--SQITYEKCLIATGGTPRSL  147 (493)
T ss_dssp             TSCEEESBSSCGGGSB-C-TTTT-----TTSTTCEEEEEETCCEEEEEGGGTEEEETTS--CEEEEEEEEECCCEEECCC
T ss_pred             ccccccccccchHhhc-c-hhhh-----hhhhcCCeEEEcCCEEEEEECCCCEEEECCC--CEEECCEEEECCCCCCCCC
Confidence            1100 00000000000 0 0000     0112458888876 443333  467777 55  5789999999999999888


Q ss_pred             CCCC
Q psy7665         267 DIPG  270 (296)
Q Consensus       267 ~i~G  270 (296)
                      +++|
T Consensus       148 ~~~~  151 (493)
T 1m6i_A          148 SAID  151 (493)
T ss_dssp             HHHH
T ss_pred             CCcc
Confidence            7665

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.89  E-value=2.4e-09  Score=98.55  Aligned_cols=64  Identities=19%  Similarity=0.157  Sum_probs=59.9

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHHhh
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWIKG   65 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~~~   65 (296)
                      .+|+|+|++|++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.+...+...
T Consensus       394 ~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~  457 (466)
T 3l8k_A          394 VLKLIFERGSMRLIGAWMIGVHSQYLINELGLAVAYGLNAKQLASFAEQHPSTNEIISYTARKV  457 (466)
T ss_dssp             EEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHCCCCTTSTTHHHHHHHHHH
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCcCCHHHHhccccCCCChHHHHHHHHHHH
Confidence            4789999999999999999999999999999999999999999999999999999998776543

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.89  E-value=1.9e-08  Score=96.81  Aligned_cols=31  Identities=19%  Similarity=0.277  Sum_probs=30.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+||+|||||++|+++|++|+++|.+|+|+|
T Consensus       272 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlE  302 (676)
T 3ps9_A          272 KREAAIIGGGIASALLSLALLRRGWQVTLYC  302 (676)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEe
Confidence            3799999999999999999999999999999

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.89  E-value=1.5e-08  Score=92.95  Aligned_cols=32  Identities=41%  Similarity=0.591  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      .+||+|||||++|+++|..|++.|.+|+|+|+
T Consensus         6 ~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~   37 (453)
T 3atr_A            6 KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDS   37 (453)
T ss_dssp             ECSEEEECCSHHHHHHHHHHSSSSCCEEEECS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEEC
Confidence            57999999999999999999999999999993

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.89  E-value=1.4e-08  Score=90.62  Aligned_cols=34  Identities=41%  Similarity=0.528  Sum_probs=31.9

Q ss_pred             CCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       112 ~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+..+||+|||||++|+++|++|+++|.+|+|+|
T Consensus        14 ~~~~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE   47 (382)
T 1ryi_A           14 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFE   47 (382)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHhCCCcEEEEe
Confidence            3466899999999999999999999999999999

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.87  E-value=3e-09  Score=100.74  Aligned_cols=138  Identities=14%  Similarity=0.040  Sum_probs=88.3

Q ss_pred             CcceeecCCCCeEEEEEEEcC-ChhHHHHHHHHHHHcCCCHHHHccCcCCC-CChHHHH---HHH------HH--hhcCC
Q psy7665           2 SLPKLGGSEVSTFITAEISSN-NAGEITQGYALGVMLGAYKQDFDALIGIH-PTCAEAI---SLS------WI--KGYNI   68 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~-~a~e~i~~~~~~~~~~~~k~~l~~~i~~~-pt~~e~l---~v~------~~--~~~~~   68 (296)
                      .+|+|+|++|++|||+|++|+ .++|+|+.++++|++++++++|.++++.| |++++..   ...      ..  ....+
T Consensus       412 ~~k~i~~~~~~~ilG~~~~g~~~~~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~~d~i~~aa~~a~n~~~~~~~~i  491 (588)
T 3ics_A          412 LIKLIFNKDSGKIYGAQTLGRDGVDKRMDVIATAIKANLTVLDLPDLELSYAPPYSSAKDPVNMVGYAASNIVDGFVDTV  491 (588)
T ss_dssp             EEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBTTTGGGCCCCCSTTTCCSSCHHHHHHHHHHHHHTTSCCEE
T ss_pred             EEEEEEECCCCeEEEEEEEcCCcHHHHHHHHHHHHHcCCCHHHhhhhhhccCCCcccccchhhhccccccccccccccee
Confidence            479999999999999999998 48999999999999999999999999988 8764321   101      11  11234


Q ss_pred             CCceeecc-ceeeeeeeccc--------cCCccchhhhccCcceeeccccCCCCccccEE-EECCChHHHHHHHHHHhCC
Q psy7665          69 EPEVIKLH-TPYLVLAKARF--------LLPTLECQEVYHDGRFYDYLDNNFQTYDYDLC-VIGGGSGGISAAKEAASMN  138 (296)
Q Consensus        69 ~~~~~~~~-~p~~v~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVv-VIGgG~aG~~aA~~l~~~G  138 (296)
                      +++.+... ..+.+++..+.        +++....+.    ..+.+.+..-  +.+..|+ +...|.-...+|..|.+.|
T Consensus       492 ~~~~~~~~~~~~~~~iDvR~~~e~~~ghi~ga~~ip~----~~l~~~~~~l--~~~~~iv~~C~~g~rs~~a~~~l~~~G  565 (588)
T 3ics_A          492 QWHEIDRIVENGGYLIDVREPNELKQGMIKGSINIPL----DELRDRLEEV--PVDKDIYITCQLGMRGYVAARMLMEKG  565 (588)
T ss_dssp             CTTTHHHHHHTTCEEEECSCGGGGGGCBCTTEEECCH----HHHTTCGGGS--CSSSCEEEECSSSHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHhcCCCEEEEcCCHHHHhcCCCCCCEECCH----HHHHHHHhhC--CCCCeEEEECCCCcHHHHHHHHHHHcC
Confidence            44444322 23456666552        222111111    1111111111  1222344 4467888888999999999


Q ss_pred             CcEEEEe
Q psy7665         139 KKVALFD  145 (296)
Q Consensus       139 ~~V~iiE  145 (296)
                      ++|..++
T Consensus       566 ~~v~~l~  572 (588)
T 3ics_A          566 YKVKNVD  572 (588)
T ss_dssp             CCEEEET
T ss_pred             CcEEEEc
Confidence            9977777

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.87  E-value=6e-09  Score=92.97  Aligned_cols=158  Identities=14%  Similarity=0.068  Sum_probs=96.1

Q ss_pred             CCCChHHHHHHHHHhhcCCC---Cc--ee----eccceeeeeeeccccCCccchhhhccCc---ceeeccccCCC-Cccc
Q psy7665          50 IHPTCAEAISLSWIKGYNIE---PE--VI----KLHTPYLVLAKARFLLPTLECQEVYHDG---RFYDYLDNNFQ-TYDY  116 (296)
Q Consensus        50 ~~pt~~e~l~v~~~~~~~~~---~~--~~----~~~~p~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~  116 (296)
                      ....+.+..++.++++++++   ++  .+    ..+.+|.+++|+|+.+..++.++.+...   ...+...-... ....
T Consensus        65 ~~~~~~~~~~v~~~~g~~v~~id~~~~~V~~~g~~~~~d~lViATGs~p~~p~i~G~~~v~~~~~~~~~~~l~~~~~~~~  144 (367)
T 1xhc_A           65 YSLDWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGARAREPQIKGKEYLLTLRTIFDADRIKESIENSG  144 (367)
T ss_dssp             SCHHHHHHHTEEEECSCCEEEEETTTTEEEESSCEEECSEEEECCCEEECCCCSBTGGGEECCCSHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHhCCcEEEECCEEEEEECCCCEEEECCcEEECCEEEECCCCCCCCCCCCCcCCEEEEcCHHHHHHHHHHhhcCC
Confidence            33444455566666654432   11  11    2467899999999876655544422111   11111110000 0124


Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccccc
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKS  196 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~  196 (296)
                      +++|||||+.|+++|..|++.|.+|+++|  +.+      .+..                              +     
T Consensus       145 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~--~~~------~~l~------------------------------~-----  181 (367)
T 1xhc_A          145 EAIIIGGGFIGLELAGNLAEAGYHVKLIH--RGA------MFLG------------------------------L-----  181 (367)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEEC--SSS------CCTT------------------------------C-----
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCEEEEEe--CCC------eecc------------------------------C-----
Confidence            89999999999999999999999999999  443      1000                              0     


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceE-EEEeCCEEEEcceeEEEEeCeEEEcCCCCCCC
Q psy7665         197 FTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA-VFVDKHRVKFAGEERTVSAQNFIIAVGGRPTY  265 (296)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~v~v~g~~~~~~a~~vV~AtG~~p~~  265 (296)
                       +            ..+...+.+.+++.|++++.+.. .......+.++++ . +.+|.||+|+|.+|+.
T Consensus       182 -~------------~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~v~~~~g-~-i~~D~vi~a~G~~p~~  236 (367)
T 1xhc_A          182 -D------------EELSNMIKDMLEETGVKFFLNSELLEANEEGVLTNSG-F-IEGKVKICAIGIVPNV  236 (367)
T ss_dssp             -C------------HHHHHHHHHHHHHTTEEEECSCCEEEECSSEEEETTE-E-EECSCEEEECCEEECC
T ss_pred             -C------------HHHHHHHHHHHHHCCCEEEcCCEEEEEEeeEEEECCC-E-EEcCEEEECcCCCcCH
Confidence             0            11223345567778999987643 3344556767432 4 9999999999988765

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.87  E-value=2.5e-08  Score=91.70  Aligned_cols=134  Identities=15%  Similarity=0.074  Sum_probs=84.7

Q ss_pred             ccceeeeeeeccccCCccchhhhccCcceeeccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCc
Q psy7665          75 LHTPYLVLAKARFLLPTLECQEVYHDGRFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGT  154 (296)
Q Consensus        75 ~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~  154 (296)
                      .+.+|.+++++|+.+..++.++.+......+.+...  ....+|+|||||..|+++|..|++.|.+|+++|  +.+    
T Consensus       128 ~~~~d~lviAtGs~p~~p~i~G~~~~~~~~~~~~~~--~~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~--~~~----  199 (463)
T 2r9z_A          128 RLSADHIVIATGGRPIVPRLPGAELGITSDGFFALQ--QQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVA--LED----  199 (463)
T ss_dssp             EEEEEEEEECCCEEECCCSCTTGGGSBCHHHHHHCS--SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEC--SSS----
T ss_pred             EEEcCEEEECCCCCCCCCCCCCccceecHHHHhhhh--ccCCEEEEECCCHHHHHHHHHHHhcCCEEEEEE--cCC----
Confidence            367899999999876655544432222222222211  123489999999999999999999999999999  443    


Q ss_pred             ccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceE-
Q psy7665         155 VWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA-  233 (296)
Q Consensus       155 ~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-  233 (296)
                        .+..                                   .++            ..+...+...+++.|++++.+.. 
T Consensus       200 --~~l~-----------------------------------~~~------------~~~~~~l~~~l~~~gv~i~~~~~v  230 (463)
T 2r9z_A          200 --RLLF-----------------------------------QFD------------PLLSATLAENMHAQGIETHLEFAV  230 (463)
T ss_dssp             --SSST-----------------------------------TSC------------HHHHHHHHHHHHHTTCEEESSCCE
T ss_pred             --cccc-----------------------------------ccC------------HHHHHHHHHHHHHCCCEEEeCCEE
Confidence              1000                                   001            01112234556778999987642 


Q ss_pred             EEE--eCC--EEEE-cceeEEEEeCeEEEcCCCCCCCC
Q psy7665         234 VFV--DKH--RVKF-AGEERTVSAQNFIIAVGGRPTYP  266 (296)
Q Consensus       234 ~~~--~~~--~v~v-~g~~~~~~a~~vV~AtG~~p~~p  266 (296)
                      ..+  +..  .+++ +|+. ++.+|.||+|+|.+|+..
T Consensus       231 ~~i~~~~~~~~v~~~~G~~-~i~~D~vv~a~G~~p~~~  267 (463)
T 2r9z_A          231 AALERDAQGTTLVAQDGTR-LEGFDSVIWAVGRAPNTR  267 (463)
T ss_dssp             EEEEEETTEEEEEETTCCE-EEEESEEEECSCEEESCT
T ss_pred             EEEEEeCCeEEEEEeCCcE-EEEcCEEEECCCCCcCCC
Confidence            222  222  3444 5522 789999999999988764

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.87  E-value=4.5e-08  Score=87.31  Aligned_cols=32  Identities=31%  Similarity=0.540  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      .+||+|||||++|+++|++|+++|.+|+|+|+
T Consensus         5 ~~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~   36 (382)
T 1y56_B            5 KSEIVVIGGGIVGVTIAHELAKRGEEVTVIEK   36 (382)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence            57999999999999999999999999999993

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.86  E-value=6.1e-08  Score=90.22  Aligned_cols=33  Identities=39%  Similarity=0.564  Sum_probs=31.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~   38 (512)
T 3e1t_A            6 EVFDLIVIGGGPGGSTLASFVAMRGHRVLLLER   38 (512)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCEEEECS
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCEEEEcc
Confidence            458999999999999999999999999999993

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.86  E-value=4.2e-10  Score=109.18  Aligned_cols=80  Identities=8%  Similarity=-0.042  Sum_probs=54.7

Q ss_pred             hcCCCCceeeccceeeeeeeccccC--------Cccchhhhc----cCcceeeccccCCCCccccEEEEC--CChHHHHH
Q psy7665          65 GYNIEPEVIKLHTPYLVLAKARFLL--------PTLECQEVY----HDGRFYDYLDNNFQTYDYDLCVIG--GGSGGISA  130 (296)
Q Consensus        65 ~~~~~~~~~~~~~p~~v~~~~~~~~--------~~~~~~~~~----~~~~~~~~~~~~~~~~~~dVvVIG--gG~aG~~a  130 (296)
                      ++.++.+....+.+|.+|+++|..+        ..+++++..    ......+.+... ...+.+|+|||  ||..|+++
T Consensus       467 ~~~v~~~~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~~~l~~~-~~~gk~VvVIG~GgG~~g~e~  545 (729)
T 1o94_A          467 QKPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGK-KKIGKRVVILNADTYFMAPSL  545 (729)
T ss_dssp             CCCCCHHHHHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECHHHHHHCC-SCCCSEEEEEECCCSSHHHHH
T ss_pred             CeEEehhhccccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEHHHHhcCC-CCCCCeEEEEcCCCCchHHHH
Confidence            4445555556688999999999873        223333322    111222333322 22345899999  99999999


Q ss_pred             HHHHHhCCCcEEEEe
Q psy7665         131 AKEAASMNKKVALFD  145 (296)
Q Consensus       131 A~~l~~~G~~V~iiE  145 (296)
                      |..|++.|.+|++++
T Consensus       546 A~~l~~~G~~Vtlv~  560 (729)
T 1o94_A          546 AEKLATAGHEVTIVS  560 (729)
T ss_dssp             HHHHHHTTCEEEEEE
T ss_pred             HHHHHHcCCEEEEEe
Confidence            999999999999999

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.86  E-value=4.2e-08  Score=92.75  Aligned_cols=32  Identities=22%  Similarity=0.501  Sum_probs=30.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..+||+|||||++|+++|+.|++.|.+|+|+|
T Consensus        22 ~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiE   53 (591)
T 3i3l_A           22 TRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYE   53 (591)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHcCCCCEEEEc
Confidence            35799999999999999999999999999999

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.86  E-value=1.8e-08  Score=90.45  Aligned_cols=31  Identities=13%  Similarity=0.327  Sum_probs=29.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+||+|||||++|+++|..|++.|.+|+|+|
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E   32 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILE   32 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEEC
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEe
Confidence            4699999999999999999999999999999

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.86  E-value=3.8e-08  Score=87.40  Aligned_cols=31  Identities=39%  Similarity=0.530  Sum_probs=30.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+||+|||||++|+++|++|+++|.+|+|+|
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle   32 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMTD   32 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEe
Confidence            4799999999999999999999999999999

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.86  E-value=1.2e-08  Score=97.62  Aligned_cols=33  Identities=39%  Similarity=0.519  Sum_probs=31.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC------CCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASM------NKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~------G~~V~iiE~  146 (296)
                      ..+||||||||++||.||+.|++.      |.+|+|+|+
T Consensus        21 ~~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK   59 (662)
T 3gyx_A           21 HSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDK   59 (662)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECS
T ss_pred             EEcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEe
Confidence            568999999999999999999998      999999994

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.85  E-value=2.2e-08  Score=89.92  Aligned_cols=31  Identities=32%  Similarity=0.681  Sum_probs=30.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+||+|||||++|+++|++|+++|.+|+|+|
T Consensus         4 ~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE   34 (397)
T 2oln_A            4 SYDVVVVGGGPVGLATAWQVAERGHRVLVLE   34 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEe
Confidence            4799999999999999999999999999999

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.85  E-value=5.4e-08  Score=91.04  Aligned_cols=32  Identities=31%  Similarity=0.486  Sum_probs=30.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..+||+|||||++|+++|+.|++.|.+|+|||
T Consensus         4 ~~~dVlIVGaG~aGl~~A~~La~~G~~v~viE   35 (535)
T 3ihg_A            4 HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVE   35 (535)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEEC
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHCCCCEEEEe
Confidence            45799999999999999999999999999999

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.85  E-value=2.9e-10  Score=109.34  Aligned_cols=86  Identities=12%  Similarity=0.142  Sum_probs=57.1

Q ss_pred             HHHHHHHHHhhcCCCCceeeccceeeeeeeccccCCccchhhhccC--cceeeccccCCCCccccEEEECCChHHHHHHH
Q psy7665          55 AEAISLSWIKGYNIEPEVIKLHTPYLVLAKARFLLPTLECQEVYHD--GRFYDYLDNNFQTYDYDLCVIGGGSGGISAAK  132 (296)
Q Consensus        55 ~e~l~v~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~dVvVIGgG~aG~~aA~  132 (296)
                      .+..++.+++++.++.+.+.  .+|.+++++|+.+..++.++....  ....+.+... .....+|+|||||+.|+++|.
T Consensus       435 ~~~~gv~~~~~~~v~~~~~~--~~d~lviAtG~~p~~~~i~G~~~~~v~~~~~~l~~~-~~~~~~VvVIGgG~~g~E~A~  511 (671)
T 1ps9_A          435 IEVTGVTLKLNHTVTADQLQ--AFDETILASGIVPRTPPIDGIDHPKVLSYLDVLRDK-APVGNKVAIIGCGGIGFDTAM  511 (671)
T ss_dssp             HHHHTCEEEESCCCCSSSSC--CSSEEEECCCEEECCCCCBTTTSTTEEEHHHHHTSC-CCCCSEEEEECCHHHHHHHHH
T ss_pred             HHHcCCEEEeCcEecHHHhh--cCCEEEEccCCCcCCCCCCCCCCCcEeeHHHHhhCC-CCCCCeEEEECCChhHHHHHH
Confidence            34455666677777765432  789999999987665554443321  1122333322 123468999999999999999


Q ss_pred             HHHhCCCcEEE
Q psy7665         133 EAASMNKKVAL  143 (296)
Q Consensus       133 ~l~~~G~~V~i  143 (296)
                      .|++.|.+|++
T Consensus       512 ~l~~~G~~vtv  522 (671)
T 1ps9_A          512 YLSQPGESTSQ  522 (671)
T ss_dssp             HHTCCSSCGGG
T ss_pred             HHHhcCCCccc
Confidence            99999876553

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.84  E-value=1.4e-08  Score=91.68  Aligned_cols=32  Identities=28%  Similarity=0.421  Sum_probs=30.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..+||+|||||++|+++|+.|++.|.+|+|+|
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E   53 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYE   53 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEe
Confidence            56899999999999999999999999999999

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.84  E-value=5.9e-08  Score=93.59  Aligned_cols=32  Identities=25%  Similarity=0.265  Sum_probs=30.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..+||+|||||.+|+++|++|+++|.+|+|+|
T Consensus       263 ~~~DVvIIGgGiaGlsaA~~La~~G~~V~vlE  294 (689)
T 3pvc_A          263 RCDDIAIIGGGIVSALTALALQRRGAVVTLYC  294 (689)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCcEEEEe
Confidence            34799999999999999999999999999999

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.84  E-value=8.8e-09  Score=95.65  Aligned_cols=33  Identities=24%  Similarity=0.391  Sum_probs=31.4

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..+||+||||||+|+++|..|++.|.+|+|||
T Consensus         9 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE   41 (500)
T 2qa1_A            9 RSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLE   41 (500)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEe
Confidence            356899999999999999999999999999999

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=98.84  E-value=5.4e-08  Score=88.58  Aligned_cols=35  Identities=26%  Similarity=0.332  Sum_probs=31.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCC-cEEEEeccCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNK-KVALFDFVTPS  150 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE~~~~~  150 (296)
                      ..+||+|||||++|+++|++|+++|+ +|+|+|  +..
T Consensus         5 ~~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE--~~~   40 (438)
T 3dje_A            5 KSSSLLIVGAGTWGTSTALHLARRGYTNVTVLD--PYP   40 (438)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCCEEEEE--SSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEEe--CCC
Confidence            35799999999999999999999999 999999  444

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.84  E-value=2.5e-09  Score=98.97  Aligned_cols=60  Identities=25%  Similarity=0.306  Sum_probs=56.6

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLS   61 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~   61 (296)
                      .+|+|+|++|++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.+...
T Consensus       410 ~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~  469 (484)
T 3o0h_A          410 FMKLVVDGESRIVVGAHVLGENAGEIAQLIGISLKGKLTKDIFDKTMAVHPTMSEELVTM  469 (484)
T ss_dssp             EEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGGGCC
T ss_pred             EEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHHHHHHH
Confidence            478999999999999999999999999999999999999999999999999999987544

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.83  E-value=1.9e-08  Score=90.47  Aligned_cols=33  Identities=30%  Similarity=0.520  Sum_probs=31.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHh-CC-CcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAAS-MN-KKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~-~G-~~V~iiE~  146 (296)
                      ..+||+|||||++|+++|++|++ +| .+|+|+|+
T Consensus        20 ~~~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~   54 (405)
T 2gag_B           20 KSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEK   54 (405)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHHHCCCCEEEECS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            56899999999999999999999 99 99999993

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.83  E-value=2.6e-09  Score=99.74  Aligned_cols=60  Identities=32%  Similarity=0.532  Sum_probs=55.8

Q ss_pred             CcceeecC-CCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHH
Q psy7665           2 SLPKLGGS-EVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLS   61 (296)
Q Consensus         2 ~~~~~~~~-~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~   61 (296)
                      .+|+|+|+ +|++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.+...
T Consensus       442 ~~Kli~~~~~~~~ilGa~i~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~  502 (519)
T 3qfa_A          442 YAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEVFTTL  502 (519)
T ss_dssp             EEEEEEETTTTCEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCTTCGGGGGGGC
T ss_pred             EEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHHHHHHH
Confidence            47899997 5899999999999999999999999999999999999999999999987544

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.83  E-value=3.4e-08  Score=93.06  Aligned_cols=32  Identities=25%  Similarity=0.402  Sum_probs=28.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +.+||+|||||++|+++|+.|++.|.+|+|||
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlE   79 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAGGVGALVLE   79 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHTTCCEEEEB
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEc
Confidence            46899999999999999999999999999999

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.82  E-value=2.1e-09  Score=94.27  Aligned_cols=50  Identities=28%  Similarity=0.345  Sum_probs=42.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHh--CCCcEEEEeccCCCCCCcccccCCeeeccCCCchh
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAAS--MNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK  171 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~--~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~  171 (296)
                      .++||+||||||+|++||++|++  .|++|+|||  +.+      .+||.+.+.++.+++
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viE--k~~------~~GG~~~~~~~~~~~  115 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIE--SSV------APGGGSWLGGQLFSA  115 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEEC--SSS------SCCTTTTCCSTTCCC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEE--CCC------CCCceEEeCCccCCH
Confidence            56899999999999999999975  599999999  666      788888777776543

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.82  E-value=1.5e-08  Score=92.49  Aligned_cols=130  Identities=14%  Similarity=0.187  Sum_probs=85.5

Q ss_pred             cceeeeeeeccccCCccchhhhc--cCccee------eccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEecc
Q psy7665          76 HTPYLVLAKARFLLPTLECQEVY--HDGRFY------DYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFV  147 (296)
Q Consensus        76 ~~p~~v~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~  147 (296)
                      ..+|.+|+|+|+.+..++.....  ......      ..+...   ...+++|||||+.|+++|..+++.|.+|+++|  
T Consensus       103 ~~yd~lVIATGs~p~~p~i~g~~~~~~~~~~~~~~l~~~~~~~---~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~--  177 (437)
T 4eqs_A          103 ESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKAN---QVDKVLVVGAGYVSLEVLENLYERGLHPTLIH--  177 (437)
T ss_dssp             EECSEEEECCCEEECCCCCCCTTEECCSSHHHHHHHHHHHHHH---TCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE--
T ss_pred             EEcCEEEECCCCccccccccCceEEeeccHHHHHHHHHhhhcc---CCcEEEEECCccchhhhHHHHHhcCCcceeee--
Confidence            56789999999876655443211  111111      111110   13479999999999999999999999999999  


Q ss_pred             CCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcE
Q psy7665         148 TPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKID  227 (296)
Q Consensus       148 ~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  227 (296)
                      +.+      .+..                                   ..+            ..+...+...+++.||+
T Consensus       178 ~~~------~ll~-----------------------------------~~d------------~~~~~~~~~~l~~~gV~  204 (437)
T 4eqs_A          178 RSD------KINK-----------------------------------LMD------------ADMNQPILDELDKREIP  204 (437)
T ss_dssp             SSS------CCST-----------------------------------TSC------------GGGGHHHHHHHHHTTCC
T ss_pred             eec------cccc-----------------------------------ccc------------chhHHHHHHHhhccceE
Confidence            443      1100                                   000            11123345667788999


Q ss_pred             EEcceE-EEEeCCEEEE-cceeEEEEeCeEEEcCCCCCCC
Q psy7665         228 YFNAKA-VFVDKHRVKF-AGEERTVSAQNFIIAVGGRPTY  265 (296)
Q Consensus       228 ~~~~~~-~~~~~~~v~v-~g~~~~~~a~~vV~AtG~~p~~  265 (296)
                      ++.+.. ...+...+.+ ++  +.+.+|.|++|+|.+|+.
T Consensus       205 i~~~~~v~~~~~~~v~~~~g--~~~~~D~vl~a~G~~Pn~  242 (437)
T 4eqs_A          205 YRLNEEINAINGNEITFKSG--KVEHYDMIIEGVGTHPNS  242 (437)
T ss_dssp             EEESCCEEEEETTEEEETTS--CEEECSEEEECCCEEESC
T ss_pred             EEeccEEEEecCCeeeecCC--eEEeeeeEEEEeceecCc
Confidence            987643 4456677777 56  678999999999988764

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.81  E-value=2.3e-08  Score=94.52  Aligned_cols=40  Identities=25%  Similarity=0.544  Sum_probs=34.6

Q ss_pred             CccccEEEECCChHHHHHHHHHHhC------CCcEEEEeccCCCCCCc
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASM------NKKVALFDFVTPSQHGT  154 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~------G~~V~iiE~~~~~~~g~  154 (296)
                      .+.+||+|||||++|+++|+.|++.      |.+|+|||  +...+|.
T Consensus        33 ~~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlE--k~~~~g~   78 (584)
T 2gmh_A           33 AEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVE--KAAHIGA   78 (584)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEEC--SSSSTTT
T ss_pred             ccCCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEe--CCCCCCC
Confidence            3568999999999999999999999      99999999  5554443

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.81  E-value=1.1e-07  Score=86.00  Aligned_cols=33  Identities=27%  Similarity=0.503  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      +||+|||||.+|++||++|+++|++|+|+|  +.+
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE--~~~   33 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFE--RLP   33 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEEC--SSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEe--CCC
Confidence            489999999999999999999999999999  666

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.80  E-value=6.8e-09  Score=92.00  Aligned_cols=53  Identities=21%  Similarity=0.210  Sum_probs=40.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCch
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPK  170 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~  170 (296)
                      +||+|||||++|+++|.+|++.|.+|+|+|  +....++-....+.+.+..|.|+
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE--~~~~~~tp~h~~d~i~eL~CnpS   54 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFE--MRPKRMTPAHGTDRFAEIVCSNS   54 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEC--CTTTSCCSSCCSSCTTCCCSCCE
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEe--ccCCcCCccccCCCccccccCcC
Confidence            589999999999999999999999999999  54433332233445555566664

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.79  E-value=2.4e-07  Score=82.72  Aligned_cols=31  Identities=35%  Similarity=0.563  Sum_probs=30.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+||+|||||++|+++|++|+++|++|+|+|
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie   33 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVD   33 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEe
Confidence            5799999999999999999999999999999

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.78  E-value=1.9e-08  Score=86.29  Aligned_cols=127  Identities=12%  Similarity=0.047  Sum_probs=80.6

Q ss_pred             ccceeeeeeeccccCCccchhhhcc---CcceeeccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCC
Q psy7665          75 LHTPYLVLAKARFLLPTLECQEVYH---DGRFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQ  151 (296)
Q Consensus        75 ~~~p~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~  151 (296)
                      .+.+|.+|+++|..+..+..++...   .................+|+|||+|+.|+++|..|++.| +|++++  +.. 
T Consensus        98 ~~~~d~vviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~--~~~-  173 (297)
T 3fbs_A           98 RETAGRLILAMGVTDELPEIAGLRERWGSAVFHCPYCHGYELDQGKIGVIAASPMAIHHALMLPDWG-ETTFFT--NGI-  173 (297)
T ss_dssp             EEEEEEEEECCCCEEECCCCBTTGGGBTTTEESCHHHHTGGGTTCEEEEECCSTTHHHHHHHGGGTS-EEEEEC--TTT-
T ss_pred             EEEcCEEEECCCCCCCCCCCCCchhhcCCeeEEcccCcchhhcCCEEEEEecCccHHHHHHHhhhcC-cEEEEE--CCC-
Confidence            3678899999997654433333221   110100000011113458999999999999999999999 999999  332 


Q ss_pred             CCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcc
Q psy7665         152 HGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA  231 (296)
Q Consensus       152 ~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  231 (296)
                           .                                                      .+...+...+++.||+++..
T Consensus       174 -----~------------------------------------------------------~~~~~~~~~l~~~gv~i~~~  194 (297)
T 3fbs_A          174 -----V------------------------------------------------------EPDADQHALLAARGVRVETT  194 (297)
T ss_dssp             -----C------------------------------------------------------CCCHHHHHHHHHTTCEEECS
T ss_pred             -----C------------------------------------------------------CCCHHHHHHHHHCCcEEEcc
Confidence                 0                                                      00112234566779999875


Q ss_pred             eEEEEeCC-EEEE-cceeEEEEeCeEEEcCCCCCCCC
Q psy7665         232 KAVFVDKH-RVKF-AGEERTVSAQNFIIAVGGRPTYP  266 (296)
Q Consensus       232 ~~~~~~~~-~v~v-~g~~~~~~a~~vV~AtG~~p~~p  266 (296)
                      ........ .+.+ ++  .++.+|.||+|+|.+|..+
T Consensus       195 ~v~~i~~~~~v~~~~g--~~~~~D~vi~a~G~~p~~~  229 (297)
T 3fbs_A          195 RIREIAGHADVVLADG--RSIALAGLFTQPKLRITVD  229 (297)
T ss_dssp             CEEEEETTEEEEETTS--CEEEESEEEECCEEECCCS
T ss_pred             eeeeeecCCeEEeCCC--CEEEEEEEEEccCcccCch
Confidence            44444443 5666 55  5789999999999887654

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.78  E-value=1.1e-07  Score=90.97  Aligned_cols=33  Identities=42%  Similarity=0.534  Sum_probs=30.6

Q ss_pred             ccccEEEECCChHHHHHHHHHH---h-CCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAA---S-MNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~---~-~G~~V~iiE~  146 (296)
                      ..+||||||||++|++||+.|+   + .|.+|+|+|+
T Consensus        21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK   57 (643)
T 1jnr_A           21 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEK   57 (643)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECS
T ss_pred             ccCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeC
Confidence            5689999999999999999999   6 8999999994

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.77  E-value=1e-08  Score=94.80  Aligned_cols=62  Identities=23%  Similarity=0.287  Sum_probs=58.6

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI   63 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~   63 (296)
                      .+|+++|+++++|||+|++|++|+|+|+.++++|+++.+.++|.+++++|||++|.+...+.
T Consensus       407 ~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~a~~  468 (482)
T 1ojt_A          407 FTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIHPHPTLGESIGMAAE  468 (482)
T ss_dssp             EEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSSSTTHHHHHHH
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999987764

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.77  E-value=2.9e-08  Score=90.75  Aligned_cols=136  Identities=20%  Similarity=0.167  Sum_probs=83.9

Q ss_pred             cceeeeeeeccccCCccchhhhccCc--c---eeecc--ccC-CCCccccEEEECCChHHHHHHHHHHhCCCcEEEEecc
Q psy7665          76 HTPYLVLAKARFLLPTLECQEVYHDG--R---FYDYL--DNN-FQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFV  147 (296)
Q Consensus        76 ~~p~~v~~~~~~~~~~~~~~~~~~~~--~---~~~~~--~~~-~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~  147 (296)
                      +.+|.+++++|+.+..++.++.....  .   ..+..  ... ......+++|||||++|+++|..|++.|.+|+++|  
T Consensus       102 ~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~--  179 (447)
T 1nhp_A          102 ENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVID--  179 (447)
T ss_dssp             EECSEEEECCCEEECCCCSTTTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEE--
T ss_pred             EeCCEEEEcCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEe--
Confidence            57899999999876655544432111  1   11110  000 00134699999999999999999999999999999  


Q ss_pred             CCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcE
Q psy7665         148 TPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKID  227 (296)
Q Consensus       148 ~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  227 (296)
                      +.+      .+...                                  .++            ..+...+...+++.|++
T Consensus       180 ~~~------~~l~~----------------------------------~~~------------~~~~~~l~~~l~~~gv~  207 (447)
T 1nhp_A          180 ILD------RPLGV----------------------------------YLD------------KEFTDVLTEEMEANNIT  207 (447)
T ss_dssp             SSS------STTTT----------------------------------TCC------------HHHHHHHHHHHHTTTEE
T ss_pred             cCc------ccccc----------------------------------cCC------------HHHHHHHHHHHHhCCCE
Confidence            443      11000                                  001            11222345566778999


Q ss_pred             EEcce-EEEE-eCC---EEEEcceeEEEEeCeEEEcCCCCCCCCC
Q psy7665         228 YFNAK-AVFV-DKH---RVKFAGEERTVSAQNFIIAVGGRPTYPD  267 (296)
Q Consensus       228 ~~~~~-~~~~-~~~---~v~v~g~~~~~~a~~vV~AtG~~p~~p~  267 (296)
                      ++.+. .... ...   .+..++  .++.+|.||+|+|.+|+.+.
T Consensus       208 i~~~~~v~~i~~~~~v~~v~~~~--~~i~~d~vi~a~G~~p~~~~  250 (447)
T 1nhp_A          208 IATGETVERYEGDGRVQKVVTDK--NAYDADLVVVAVGVRPNTAW  250 (447)
T ss_dssp             EEESCCEEEEECSSBCCEEEESS--CEEECSEEEECSCEEESCGG
T ss_pred             EEcCCEEEEEEccCcEEEEEECC--CEEECCEEEECcCCCCChHH
Confidence            98753 2222 222   233455  57899999999999887543

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.76  E-value=3.5e-08  Score=89.06  Aligned_cols=33  Identities=24%  Similarity=0.392  Sum_probs=30.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC--CCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASM--NKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~  146 (296)
                      ..+||+|||||++|+++|++|+++  |.+|+|+|+
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~   69 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEE   69 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECS
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeC
Confidence            358999999999999999999999  999999993

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.76  E-value=7.3e-09  Score=94.93  Aligned_cols=58  Identities=28%  Similarity=0.419  Sum_probs=54.8

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAIS   59 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~   59 (296)
                      .+|+++|+++++|||+|++|++|+|+|+.++++|+++.+.++|.+++++|||++|.+.
T Consensus       390 ~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~  447 (450)
T 1ges_A          390 RMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEFV  447 (450)
T ss_dssp             EEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGG
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCChHHHHH
Confidence            3689999999999999999999999999999999999999999999999999999653

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.75  E-value=7.3e-08  Score=89.42  Aligned_cols=33  Identities=24%  Similarity=0.359  Sum_probs=31.0

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..+||+||||||+|+++|..|++.|.+|+|||
T Consensus        10 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE   42 (499)
T 2qa2_A           10 RSDASVIVVGAGPAGLMLAGELRLGGVDVMVLE   42 (499)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEE
Confidence            366899999999999999999999999999999

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.75  E-value=1e-07  Score=85.67  Aligned_cols=46  Identities=26%  Similarity=0.455  Sum_probs=36.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      ..+||+|||||++|+++|..|++.|.+|+|+|  +.+.++.+ ..|+.+
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E--~~~~~~~~-~~g~~~   70 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYE--RDNDREAR-IFGGTL   70 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEE--CSSSTTCC-CCSCCE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEe--CCCCcccc-ccCCee
Confidence            45799999999999999999999999999999  54433322 235444

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.75  E-value=4.2e-08  Score=88.72  Aligned_cols=134  Identities=15%  Similarity=0.110  Sum_probs=84.8

Q ss_pred             ccceeeeeeeccccCCccch-hhhc-cCc---ceeec--cccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEecc
Q psy7665          75 LHTPYLVLAKARFLLPTLEC-QEVY-HDG---RFYDY--LDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFV  147 (296)
Q Consensus        75 ~~~p~~v~~~~~~~~~~~~~-~~~~-~~~---~~~~~--~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~  147 (296)
                      .+.+|.+++++|+.+..++. ++.. ...   ...+.  +... .....+|+|||||+.|+++|..|++.|.+|+++|  
T Consensus        99 ~~~~d~lviAtG~~~~~~~i~~G~~~~v~~~~~~~~~~~l~~~-~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~--  175 (408)
T 2gqw_A           99 TLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAG-LRPQSRLLIVGGGVIGLELAATARTAGVHVSLVE--  175 (408)
T ss_dssp             EEECSEEEECCCEEECCCGGGTTCSSCEEECCSHHHHHHHHTT-CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEE--
T ss_pred             EEECCEEEECCCCCCCCCCccCCCCCcEEEECCHHHHHHHHHH-hhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEE--
Confidence            46789999999987665554 3332 111   11111  1111 1124589999999999999999999999999999  


Q ss_pred             CCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcE
Q psy7665         148 TPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKID  227 (296)
Q Consensus       148 ~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  227 (296)
                      +.+      .+...                                  ..+            ..+...+...+++.||+
T Consensus       176 ~~~------~~l~~----------------------------------~~~------------~~~~~~l~~~l~~~GV~  203 (408)
T 2gqw_A          176 TQP------RLMSR----------------------------------AAP------------ATLADFVARYHAAQGVD  203 (408)
T ss_dssp             SSS------SSSTT----------------------------------TSC------------HHHHHHHHHHHHHTTCE
T ss_pred             eCC------ccccc----------------------------------ccC------------HHHHHHHHHHHHHcCcE
Confidence            443      11000                                  000            11122344556778999


Q ss_pred             EEcce-EEEEeCCEEEE-cceeEEEEeCeEEEcCCCCCCC
Q psy7665         228 YFNAK-AVFVDKHRVKF-AGEERTVSAQNFIIAVGGRPTY  265 (296)
Q Consensus       228 ~~~~~-~~~~~~~~v~v-~g~~~~~~a~~vV~AtG~~p~~  265 (296)
                      ++.+. ........+++ +|  .++.||.||+|+|.+|+.
T Consensus       204 i~~~~~v~~i~~~~v~~~~g--~~i~~D~vi~a~G~~p~~  241 (408)
T 2gqw_A          204 LRFERSVTGSVDGVVLLDDG--TRIAADMVVVGIGVLAND  241 (408)
T ss_dssp             EEESCCEEEEETTEEEETTS--CEEECSEEEECSCEEECC
T ss_pred             EEeCCEEEEEECCEEEECCC--CEEEcCEEEECcCCCccH
Confidence            98763 32232346666 55  578999999999988764

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.74  E-value=5e-08  Score=87.69  Aligned_cols=31  Identities=23%  Similarity=0.341  Sum_probs=30.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+||+|||||++|+++|..|++.|.+|+|+|
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE   36 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVE   36 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCcEEEEe
Confidence            5799999999999999999999999999999

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.73  E-value=4.2e-10  Score=101.14  Aligned_cols=99  Identities=11%  Similarity=-0.014  Sum_probs=63.6

Q ss_pred             CcCCCCChHHHHHHHHHhhcCCCC----------ceeeccceeeeeeeccccCCccchhhhccCcc---eeeccccCC-C
Q psy7665          47 LIGIHPTCAEAISLSWIKGYNIEP----------EVIKLHTPYLVLAKARFLLPTLECQEVYHDGR---FYDYLDNNF-Q  112 (296)
Q Consensus        47 ~i~~~pt~~e~l~v~~~~~~~~~~----------~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~  112 (296)
                      ....++...+..++.++++++++.          +.-..+.+|.+++|+|+.+..++.++......   ..+...-.. .
T Consensus        64 l~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~~p~i~G~~~v~~~~~~~d~~~l~~~l  143 (385)
T 3klj_A           64 ILIKKNDWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANKIKVPHADEIFSLYSYDDALKIKDEC  143 (385)
T ss_dssp             TBSSCHHHHHHTTCEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCCCTTCSCEECCSSHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEecCCCcCCCCCCCCCCeEEeCCHHHHHHHHHHh
Confidence            344455555666777776665532          11135678999999998776665554431111   111111000 0


Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ....+|+|||||+.|+++|..|++.|.+|+++|
T Consensus       144 ~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~  176 (385)
T 3klj_A          144 KNKGKAFIIGGGILGIELAQAIIDSGTPASIGI  176 (385)
T ss_dssp             HHHSCEEEECCSHHHHHHHHHHHHHTCCEEEEC
T ss_pred             hcCCeEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence            013589999999999999999999999999999

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.72  E-value=1.6e-08  Score=92.78  Aligned_cols=62  Identities=24%  Similarity=0.215  Sum_probs=58.2

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI   63 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~   63 (296)
                      .+|+++|+++++|||+|++|++|+|+|+.++++|+++.+.++|.+++++|||++|.+...++
T Consensus       391 ~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~  452 (455)
T 1ebd_A          391 FLKLVVRKEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEIAMEAAE  452 (455)
T ss_dssp             EEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTSSTHHHHHHHH
T ss_pred             EEEEEEECCCCEEEEEEEeCCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999977654

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.72  E-value=1.6e-07  Score=84.70  Aligned_cols=31  Identities=29%  Similarity=0.487  Sum_probs=29.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCc-EEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKK-VALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~-V~iiE  145 (296)
                      .+||+|||||++|+++|..|++.|.+ |+|+|
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E   35 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLE   35 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEE
Confidence            46999999999999999999999999 99999

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.72  E-value=4.2e-08  Score=88.76  Aligned_cols=156  Identities=17%  Similarity=0.182  Sum_probs=93.3

Q ss_pred             ChHHHHHHHHHhhcCCCC-----cee-----eccceeeeeeeccccCCccchhhhccC--cc---eeec--cccCCCCcc
Q psy7665          53 TCAEAISLSWIKGYNIEP-----EVI-----KLHTPYLVLAKARFLLPTLECQEVYHD--GR---FYDY--LDNNFQTYD  115 (296)
Q Consensus        53 t~~e~l~v~~~~~~~~~~-----~~~-----~~~~p~~v~~~~~~~~~~~~~~~~~~~--~~---~~~~--~~~~~~~~~  115 (296)
                      ...+..++.++++++++.     ..+     ..+.+|.+++++|+.+..++.++....  ..   ..+.  +... ....
T Consensus        65 ~~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~ipG~~~~~v~~~~~~~d~~~l~~~-~~~~  143 (410)
T 3ef6_A           65 DWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRARTMALPGSQLPGVVTLRTYGDVQVLRDS-WTSA  143 (410)
T ss_dssp             THHHHTTCEEEESCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCCCTTTTSTTEECCCSHHHHHHHHHH-CCTT
T ss_pred             HHHHHCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEccCCcccCCCCCCccccceEEeccHHHHHHHHHH-hccC
Confidence            344455666666544421     111     246789999999987655544433211  11   1111  1111 1124


Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKK  195 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~  195 (296)
                      .+|+|||+|+.|+++|..+++.|.+|+++|  +.+      .                                      
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~--~~~------~--------------------------------------  177 (410)
T 3ef6_A          144 TRLLIVGGGLIGCEVATTARKLGLSVTILE--AGD------E--------------------------------------  177 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEC--SSS------S--------------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEe--cCC------c--------------------------------------
Confidence            589999999999999999999999999999  433      0                                      


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceE-EEEeCC----EEEE-cceeEEEEeCeEEEcCCCCCCC
Q psy7665         196 SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA-VFVDKH----RVKF-AGEERTVSAQNFIIAVGGRPTY  265 (296)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~----~v~v-~g~~~~~~a~~vV~AtG~~p~~  265 (296)
                       +-...+.       ..+...+...+++.||+++.+.. ......    .+.+ +|  .++.||.||+|+|.+|+.
T Consensus       178 -~l~~~~~-------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg--~~i~aD~Vv~a~G~~p~~  243 (410)
T 3ef6_A          178 -LLVRVLG-------RRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDG--RSFVADSALICVGAEPAD  243 (410)
T ss_dssp             -SSHHHHC-------HHHHHHHHHHHHHHTCEEECSCCEEEEECSSSCCEEEETTS--CEEECSEEEECSCEEECC
T ss_pred             -cchhhcC-------HHHHHHHHHHHHHCCCEEEeCCEEEEEeccCcEEEEEECCC--CEEEcCEEEEeeCCeecH
Confidence             0000000       11223344556777999986543 222221    4555 55  578999999999998765

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.72  E-value=9.2e-08  Score=88.52  Aligned_cols=136  Identities=17%  Similarity=0.123  Sum_probs=83.8

Q ss_pred             ccceeeeeeeccccCCccchhhhc-----------cCcce--------eeccccCCCCccccEEEECCChHHHHHHHHHH
Q psy7665          75 LHTPYLVLAKARFLLPTLECQEVY-----------HDGRF--------YDYLDNNFQTYDYDLCVIGGGSGGISAAKEAA  135 (296)
Q Consensus        75 ~~~p~~v~~~~~~~~~~~~~~~~~-----------~~~~~--------~~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~  135 (296)
                      .+..|.+++++|+.+..++.++..           .....        .++++........+|+|||||+.|+++|..|+
T Consensus       135 ~~~~d~lviAtG~~p~~p~i~G~~~~~~~~~f~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~  214 (490)
T 2bc0_A          135 VETYDKLIFATGSQPILPPIKGAEIKEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQ  214 (490)
T ss_dssp             EEECSEEEECCCEEECCCSCBTCCBCTTCTTCCBSSTTEEECSSHHHHHHHHHHTTSTTCCEEEEECCSHHHHHHHHHHH
T ss_pred             EEECCEEEECCCCCcCCCCCCCccccccccccccccCCEEEeCCHHHHHHHHHHhhhcCCceEEEECCCHHHHHHHHHHH
Confidence            367899999999876655444332           11111        11111110023458999999999999999999


Q ss_pred             hCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHH
Q psy7665         136 SMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNN  215 (296)
Q Consensus       136 ~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  215 (296)
                      +.|.+|+++|  +.+      .+-.         .                         .++            ..+..
T Consensus       215 ~~g~~Vtlv~--~~~------~~l~---------~-------------------------~~~------------~~~~~  240 (490)
T 2bc0_A          215 RKGKEVVLID--VVD------TCLA---------G-------------------------YYD------------RDLTD  240 (490)
T ss_dssp             HTTCEEEEEE--SSS------STTT---------T-------------------------TSC------------HHHHH
T ss_pred             HCCCeEEEEE--ccc------chhh---------h-------------------------HHH------------HHHHH
Confidence            9999999999  443      1000         0                         000            11122


Q ss_pred             HHHHHHHHCCcEEEcceE-EEE-eCC---EEEEcceeEEEEeCeEEEcCCCCCCCC
Q psy7665         216 NYEKELEKNKIDYFNAKA-VFV-DKH---RVKFAGEERTVSAQNFIIAVGGRPTYP  266 (296)
Q Consensus       216 ~~~~~~~~~~v~~~~~~~-~~~-~~~---~v~v~g~~~~~~a~~vV~AtG~~p~~p  266 (296)
                      .+...+++.||+++.+.. ... ...   .+..++  .++.+|.||+|+|.+|+.+
T Consensus       241 ~l~~~l~~~GV~i~~~~~v~~i~~~~~v~~v~~~g--~~i~~D~Vi~a~G~~p~~~  294 (490)
T 2bc0_A          241 LMAKNMEEHGIQLAFGETVKEVAGNGKVEKIITDK--NEYDVDMVILAVGFRPNTT  294 (490)
T ss_dssp             HHHHHHHTTTCEEEETCCEEEEECSSSCCEEEESS--CEEECSEEEECCCEEECCG
T ss_pred             HHHHHHHhCCeEEEeCCEEEEEEcCCcEEEEEECC--cEEECCEEEECCCCCcChH
Confidence            345566778999987642 222 222   244455  5789999999999887654

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.71  E-value=1.2e-08  Score=94.28  Aligned_cols=58  Identities=29%  Similarity=0.513  Sum_probs=55.2

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAIS   59 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~   59 (296)
                      .+|+++|+++++|||+|++|++++|+|+.++++|+++.+.++|.+++++|||++|.+.
T Consensus       411 ~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~  468 (479)
T 2hqm_A          411 RYKIVCAGPNEKVVGLHIVGDSSAEILQGFGVAIKMGATKADFDNCVAIHPTSAEELV  468 (479)
T ss_dssp             EEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGG
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCChHHHHH
Confidence            3689999999999999999999999999999999999999999999999999999774

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.71  E-value=1.1e-07  Score=88.90  Aligned_cols=31  Identities=23%  Similarity=0.462  Sum_probs=29.9

Q ss_pred             cccEEEECCChHHHHHHHHHHh---CCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAAS---MNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~---~G~~V~iiE  145 (296)
                      .+||+|||||++|+++|+.|++   .|.+|+|||
T Consensus         5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE   38 (538)
T 2aqj_A            5 IKNIVIVGGGTAGWMAASYLVRALQQQANITLIE   38 (538)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEEC
Confidence            4699999999999999999999   999999999

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.71  E-value=2.3e-08  Score=91.97  Aligned_cols=62  Identities=23%  Similarity=0.293  Sum_probs=58.3

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI   63 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~   63 (296)
                      .+|+++|+++++|||+|++|++|+|+|+.++++|+++.+.++|.+++++|||++|.+...+.
T Consensus       398 ~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~  459 (468)
T 2qae_A          398 FVKVLVDKATDRILGVHIVCTTAGELIGEACLAMEYGASSEDVGRTCHAHPTMSEALKEACM  459 (468)
T ss_dssp             EEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTHHHHHHHHH
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999977764

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.71  E-value=2.3e-08  Score=91.90  Aligned_cols=62  Identities=11%  Similarity=0.207  Sum_probs=58.4

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI   63 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~   63 (296)
                      .+|+++|+++++|||+|++|++|+|+|+.++++|+++.+.++|.+++++|||++|.+...+.
T Consensus       394 ~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~  455 (464)
T 2a8x_A          394 FVKLVADAKHGELLGGHLVGHDVAELLPELTLAQRWDLTASELARNVHTHPTMSEALQECFH  455 (464)
T ss_dssp             EEEEEEETTTTEEEEEEEEETTGGGGHHHHHHHHHTTCBHHHHTTSCCCTTCTTHHHHHHHH
T ss_pred             EEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhhCccCCCChHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999977764

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.71  E-value=1.6e-07  Score=84.43  Aligned_cols=32  Identities=22%  Similarity=0.402  Sum_probs=30.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..+||+|||||++|+++|..|++.|.+|+|+|
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E   35 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYE   35 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEe
Confidence            34699999999999999999999999999999

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=98.71  E-value=1.1e-08  Score=92.95  Aligned_cols=47  Identities=36%  Similarity=0.644  Sum_probs=40.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeee--ccCCCch
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCV--NVGCIPK  170 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~--~~~~~p~  170 (296)
                      +||+|||||++|++||++|+++|++|+|+|  +.+      .+||.|.  +.+|+|.
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE--~~~------~~GG~~~t~~~~cipg   50 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLE--GGE------RLGGRAYSRESRNVPG   50 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEEC--SSS------SSBTTCCEEECSSSTT
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEe--cCC------CccCeecceeccCCCC
Confidence            699999999999999999999999999999  666      7888875  4466664

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.70  E-value=2.1e-08  Score=87.46  Aligned_cols=35  Identities=31%  Similarity=0.453  Sum_probs=32.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC--CCcEEEEeccCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASM--NKKVALFDFVTPS  150 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~~~~~  150 (296)
                      ..+||+|||||++|+.+|+.|++.  |++|+|+|  +.+
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e--~~~  100 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIE--SSV  100 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEEC--SSS
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEe--cCc
Confidence            457999999999999999999998  99999999  655

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.70  E-value=1e-07  Score=89.62  Aligned_cols=32  Identities=34%  Similarity=0.473  Sum_probs=30.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..+||+|||||++|+.+|+.|+++|++|+|+|
T Consensus        17 ~~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlE   48 (561)
T 3da1_A           17 KQLDLLVIGGGITGAGIALDAQVRGIQTGLVE   48 (561)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCcEEEEE
Confidence            46899999999999999999999999999999

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.70  E-value=1.4e-08  Score=94.02  Aligned_cols=57  Identities=26%  Similarity=0.412  Sum_probs=54.7

Q ss_pred             c-ceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHH
Q psy7665           3 L-PKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAIS   59 (296)
Q Consensus         3 ~-~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~   59 (296)
                      + |+|+|+++++|||+|++|++++|+|+.++++|+++.+.++|.+++++|||++|.+.
T Consensus       411 ~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~  468 (490)
T 1fec_A          411 MVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEELC  468 (490)
T ss_dssp             EEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGG
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhccccCCCCHHHHHH
Confidence            5 89999999999999999999999999999999999999999999999999999764

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.70  E-value=4.3e-08  Score=87.84  Aligned_cols=134  Identities=12%  Similarity=0.047  Sum_probs=82.6

Q ss_pred             ccceeeeeeeccccCCccchhhhccC--cceeeccc-----cCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEecc
Q psy7665          75 LHTPYLVLAKARFLLPTLECQEVYHD--GRFYDYLD-----NNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFV  147 (296)
Q Consensus        75 ~~~p~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~  147 (296)
                      .+.+|.+++++|+.+..++.++....  ....+..+     .. .....+++|||||+.|+++|..|++.|.+|+++|  
T Consensus        99 ~~~~d~lviAtG~~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~-~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~--  175 (384)
T 2v3a_A           99 EVRYRDLVLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQA-AAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVA--  175 (384)
T ss_dssp             EEECSEEEECCCEEECCCCCBSTTTTCEEECSSHHHHHHHHHH-HTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEE--
T ss_pred             EEECCEEEEeCCCCcCCCCCCCcCcCCEEEECCHHHHHHHHHh-hccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEe--
Confidence            46789999999987665544433211  11111110     00 0113589999999999999999999999999999  


Q ss_pred             CCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcE
Q psy7665         148 TPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKID  227 (296)
Q Consensus       148 ~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  227 (296)
                      +.+      .+...                                  ..+            ..+...+...+++.|++
T Consensus       176 ~~~------~~~~~----------------------------------~~~------------~~~~~~l~~~l~~~gv~  203 (384)
T 2v3a_A          176 PCE------QVMPG----------------------------------LLH------------PAAAKAVQAGLEGLGVR  203 (384)
T ss_dssp             SSS------SSSTT----------------------------------TSC------------HHHHHHHHHHHHTTTCE
T ss_pred             cCc------chhhc----------------------------------ccC------------HHHHHHHHHHHHHcCCE
Confidence            443      11100                                  000            11122344556777999


Q ss_pred             EEcce-EEEE--eCCE--EEE-cceeEEEEeCeEEEcCCCCCCC
Q psy7665         228 YFNAK-AVFV--DKHR--VKF-AGEERTVSAQNFIIAVGGRPTY  265 (296)
Q Consensus       228 ~~~~~-~~~~--~~~~--v~v-~g~~~~~~a~~vV~AtG~~p~~  265 (296)
                      ++.+. ....  +...  +.+ +|  .++.+|.||+|+|.+|+.
T Consensus       204 i~~~~~v~~i~~~~~~~~v~~~~g--~~i~~d~vv~a~G~~p~~  245 (384)
T 2v3a_A          204 FHLGPVLASLKKAGEGLEAHLSDG--EVIPCDLVVSAVGLRPRT  245 (384)
T ss_dssp             EEESCCEEEEEEETTEEEEEETTS--CEEEESEEEECSCEEECC
T ss_pred             EEeCCEEEEEEecCCEEEEEECCC--CEEECCEEEECcCCCcCH
Confidence            98764 2222  2333  333 45  578999999999988765

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.69  E-value=1.4e-08  Score=94.19  Aligned_cols=57  Identities=28%  Similarity=0.366  Sum_probs=54.9

Q ss_pred             cceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHH
Q psy7665           3 LPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAIS   59 (296)
Q Consensus         3 ~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~   59 (296)
                      +|+|+|+++++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.+.
T Consensus       416 ~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~  472 (495)
T 2wpf_A          416 AKIVTNHSDGTVLGVHLLGDGAPEIIQAVGVCLRLNAKISDFYNTIGVHPTSAEELC  472 (495)
T ss_dssp             EEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGGG
T ss_pred             EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHH
Confidence            799999999999999999999999999999999999999999999999999999764

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.68  E-value=2e-08  Score=93.21  Aligned_cols=58  Identities=36%  Similarity=0.435  Sum_probs=55.4

Q ss_pred             cceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHH
Q psy7665           3 LPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISL   60 (296)
Q Consensus         3 ~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v   60 (296)
                      +|+++|+++++|||+|++|++++|+|+.++++|+++.+.++|.+++++|||++|.+..
T Consensus       437 ~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~  494 (500)
T 1onf_A          437 LKLVCVGKDELIKGLHIIGLNADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEFLT  494 (500)
T ss_dssp             EEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSTTHHHH
T ss_pred             EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhccccCCCCHHHHHHH
Confidence            6899999999999999999999999999999999999999999999999999998753

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.68  E-value=2.9e-08  Score=91.33  Aligned_cols=61  Identities=25%  Similarity=0.354  Sum_probs=58.0

Q ss_pred             cceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665           3 LPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI   63 (296)
Q Consensus         3 ~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~   63 (296)
                      +|+++|+++++|||+|++|++|+|+|+.++++|+++.+.++|.+++++|||++|.+...+.
T Consensus       401 ~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~  461 (470)
T 1dxl_A          401 VKIIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAIKEAAM  461 (470)
T ss_dssp             EEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTTHHHHHHHH
T ss_pred             EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHHH
Confidence            6899999999999999999999999999999999999999999999999999999977764

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.67  E-value=1.3e-07  Score=82.05  Aligned_cols=134  Identities=15%  Similarity=0.158  Sum_probs=81.6

Q ss_pred             ccceeeeeeeccccCCccchhhhcc--Cccee--eccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665          75 LHTPYLVLAKARFLLPTLECQEVYH--DGRFY--DYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus        75 ~~~p~~v~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      .+.+|.+++++|..+..++.+....  .....  ...+.. .....+|+|||+|++|+++|..|++.|.+|++++  +.+
T Consensus       102 ~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~--~~~  178 (320)
T 1trb_A          102 EYTCDALIIATGASARYLGLPSEEAFKGRGVSACATSDGF-FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIH--RRD  178 (320)
T ss_dssp             EEEEEEEEECCCEEECCCCCHHHHHTBTTTEESCHHHHGG-GGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEEC--SSS
T ss_pred             EEEcCEEEECCCCCcCCCCCCChHHhCCceeEecccCCcc-ccCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEE--eCC
Confidence            3568899999997655444333221  00110  001110 1123589999999999999999999999999999  433


Q ss_pred             CCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEc
Q psy7665         151 QHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFN  230 (296)
Q Consensus       151 ~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  230 (296)
                            .+.                                     .+            ..+...+...+++.||+++.
T Consensus       179 ------~~~-------------------------------------~~------------~~~~~~l~~~l~~~gv~i~~  203 (320)
T 1trb_A          179 ------GFR-------------------------------------AE------------KILIKRLMDKVENGNIILHT  203 (320)
T ss_dssp             ------SCC-------------------------------------CC------------HHHHHHHHHHHHTSSEEEEC
T ss_pred             ------ccc-------------------------------------cC------------HHHHHHHHHhcccCCeEEEc
Confidence                  000                                     00            01112234456678999987


Q ss_pred             ceE-EEE-eCC----EEEE-c----ceeEEEEeCeEEEcCCCCCCCC
Q psy7665         231 AKA-VFV-DKH----RVKF-A----GEERTVSAQNFIIAVGGRPTYP  266 (296)
Q Consensus       231 ~~~-~~~-~~~----~v~v-~----g~~~~~~a~~vV~AtG~~p~~p  266 (296)
                      +.. ... ...    .+.+ +    ++..++.+|.||+|+|.+|...
T Consensus       204 ~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~  250 (320)
T 1trb_A          204 NRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTA  250 (320)
T ss_dssp             SCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCEEESCG
T ss_pred             CceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCCCCChH
Confidence            643 222 221    2555 3    4446799999999999887653

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.67  E-value=3.1e-08  Score=91.08  Aligned_cols=62  Identities=24%  Similarity=0.300  Sum_probs=58.6

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI   63 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~   63 (296)
                      .+|+++|+++++|||+|++|++|+|+|+.++++|+++.+.++|.+.+++|||++|.+...++
T Consensus       391 ~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~  452 (464)
T 2eq6_A          391 MVKVVGDEETDLLLGVFIVGPQAGELIAEAALALEMGATLTDLALTVHPHPTLSESLMEAAE  452 (464)
T ss_dssp             EEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTTHHHHHHHH
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHH
Confidence            36889999899999999999999999999999999999999999999999999999987765

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.67  E-value=4.1e-08  Score=86.43  Aligned_cols=33  Identities=18%  Similarity=0.238  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHHh---CCCcEEEEeccCCC
Q psy7665         116 YDLCVIGGGSGGISAAKEAAS---MNKKVALFDFVTPS  150 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~---~G~~V~iiE~~~~~  150 (296)
                      +||+|||||++|+++|+.|++   .|++|+|+|  +..
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~E--k~~   37 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWD--KAD   37 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEEC--SSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEE--CCC
Confidence            489999999999999999999   999999999  555

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.66  E-value=1.7e-07  Score=85.91  Aligned_cols=71  Identities=14%  Similarity=0.171  Sum_probs=45.6

Q ss_pred             ccceeeeeeeccccCCccchhh-hccC-cce--eecccc-CC----CCccccEEEECCChHHHHHHHHHHhC--CCcEEE
Q psy7665          75 LHTPYLVLAKARFLLPTLECQE-VYHD-GRF--YDYLDN-NF----QTYDYDLCVIGGGSGGISAAKEAASM--NKKVAL  143 (296)
Q Consensus        75 ~~~p~~v~~~~~~~~~~~~~~~-~~~~-~~~--~~~~~~-~~----~~~~~dVvVIGgG~aG~~aA~~l~~~--G~~V~i  143 (296)
                      .+..|.+|+++|..+..++... .... ...  .+.... ..    .....+|+|||||.+|+++|..|++.  |.+|++
T Consensus       178 ~~~~d~lVlAtG~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~  257 (463)
T 3s5w_A          178 VRTTRALVVSPGGTPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADM  257 (463)
T ss_dssp             EEEESEEEECCCCEECCCGGGGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEE
T ss_pred             EEEeCEEEECCCCCCCCcchhhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEE
Confidence            4567899999998655443211 1111 111  111110 00    01356899999999999999999999  899999


Q ss_pred             Ee
Q psy7665         144 FD  145 (296)
Q Consensus       144 iE  145 (296)
                      ++
T Consensus       258 v~  259 (463)
T 3s5w_A          258 IL  259 (463)
T ss_dssp             EC
T ss_pred             EE
Confidence            99

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.66  E-value=3.1e-07  Score=80.27  Aligned_cols=135  Identities=12%  Similarity=0.133  Sum_probs=81.1

Q ss_pred             ccceeeeeeeccc---cCCccchhhhcc--CcceeeccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCC
Q psy7665          75 LHTPYLVLAKARF---LLPTLECQEVYH--DGRFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTP  149 (296)
Q Consensus        75 ~~~p~~v~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~  149 (296)
                      .+.+|.+|+++|.   .+..++.++...  .......+.........+|+|||+|..|+++|..|++.|.+|++++  +.
T Consensus       107 ~~~~~~lv~AtG~~~~~p~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~--~~  184 (335)
T 2zbw_A          107 AYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYAVKSKAEFQGKRVLIVGGGDSAVDWALNLLDTARRITLIH--RR  184 (335)
T ss_dssp             EEEEEEEEECCTTSEEEECCCCCTTTTTTBTTTEESSCSCGGGGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEEC--SS
T ss_pred             EEEeCEEEECCCCCCCCCCCCCCCChhhccCcEEEEecCchhhcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEE--cC
Confidence            3567899999997   343333332211  1111111111111124589999999999999999999999999999  43


Q ss_pred             CCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEE
Q psy7665         150 SQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYF  229 (296)
Q Consensus       150 ~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  229 (296)
                      +      .+..                                     . +..           ...+...+++.+++++
T Consensus       185 ~------~~~~-------------------------------------~-~~~-----------~~~l~~~l~~~gv~v~  209 (335)
T 2zbw_A          185 P------QFRA-------------------------------------H-EAS-----------VKELMKAHEEGRLEVL  209 (335)
T ss_dssp             S------SCCS-------------------------------------C-HHH-----------HHHHHHHHHTTSSEEE
T ss_pred             C------ccCc-------------------------------------c-HHH-----------HHHHHhccccCCeEEe
Confidence            3      1000                                     0 011           1223445667799998


Q ss_pred             cceE-EEE-eC-C--EEEE----cceeEEEEeCeEEEcCCCCCCCC
Q psy7665         230 NAKA-VFV-DK-H--RVKF----AGEERTVSAQNFIIAVGGRPTYP  266 (296)
Q Consensus       230 ~~~~-~~~-~~-~--~v~v----~g~~~~~~a~~vV~AtG~~p~~p  266 (296)
                      .+.. ... .. .  .+.+    +|+..++.+|.||+|+|.+|..+
T Consensus       210 ~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~  255 (335)
T 2zbw_A          210 TPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLG  255 (335)
T ss_dssp             TTEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEEEECG
T ss_pred             cCCcceeEccCCCeeEEEEEECCCCceEEEecCEEEEeecCCCCch
Confidence            8743 222 22 2  4554    24346789999999999887653

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.65  E-value=1.8e-07  Score=86.35  Aligned_cols=135  Identities=19%  Similarity=0.229  Sum_probs=82.4

Q ss_pred             ccceeeeeeeccccCCccchhhhccCc--c---eeecc--ccCC-CCccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665          75 LHTPYLVLAKARFLLPTLECQEVYHDG--R---FYDYL--DNNF-QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus        75 ~~~p~~v~~~~~~~~~~~~~~~~~~~~--~---~~~~~--~~~~-~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      .+..|.+|+++|+.+..++.++.....  .   ..+..  .... .....+|+|||||++|+++|..|++.|.+|+++| 
T Consensus       138 ~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~-  216 (480)
T 3cgb_A          138 EFSYDRLLIATGVRPVMPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIE-  216 (480)
T ss_dssp             EEECSEEEECCCEEECCCCCBTTTSBTEECCSSHHHHHHHHHHHHSSCCCEEEEECCHHHHHHHHHHHHHTTCEEEEEC-
T ss_pred             EEEcCEEEECCCCcccCCCCCCccCCCEEEeCCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEE-
Confidence            367889999999876555444332111  1   11111  0000 0023589999999999999999999999999999 


Q ss_pred             cCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCc
Q psy7665         147 VTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKI  226 (296)
Q Consensus       147 ~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  226 (296)
                       +.+      .+..                                   .++            ..+...+...+++.|+
T Consensus       217 -~~~------~~l~-----------------------------------~~~------------~~~~~~l~~~l~~~Gv  242 (480)
T 3cgb_A          217 -RND------HIGT-----------------------------------IYD------------GDMAEYIYKEADKHHI  242 (480)
T ss_dssp             -CGG------GTTS-----------------------------------SSC------------HHHHHHHHHHHHHTTC
T ss_pred             -eCC------chhh-----------------------------------cCC------------HHHHHHHHHHHHHcCc
Confidence             333      1110                                   001            1112234455677899


Q ss_pred             EEEcceE-EE-EeCCEE---EEcceeEEEEeCeEEEcCCCCCCCC
Q psy7665         227 DYFNAKA-VF-VDKHRV---KFAGEERTVSAQNFIIAVGGRPTYP  266 (296)
Q Consensus       227 ~~~~~~~-~~-~~~~~v---~v~g~~~~~~a~~vV~AtG~~p~~p  266 (296)
                      +++.+.. .. .....+   ..++  .++.+|.||+|+|.+|+.+
T Consensus       243 ~i~~~~~v~~i~~~~~v~~v~~~~--~~i~~D~vi~a~G~~p~~~  285 (480)
T 3cgb_A          243 EILTNENVKAFKGNERVEAVETDK--GTYKADLVLVSVGVKPNTD  285 (480)
T ss_dssp             EEECSCCEEEEEESSBEEEEEETT--EEEECSEEEECSCEEESCG
T ss_pred             EEEcCCEEEEEEcCCcEEEEEECC--CEEEcCEEEECcCCCcChH
Confidence            9987532 22 222323   2355  5799999999999887653

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.65  E-value=2.1e-07  Score=84.24  Aligned_cols=135  Identities=19%  Similarity=0.157  Sum_probs=83.4

Q ss_pred             ccceeeeeeeccccCCccchhhhccCc--c---eeecc--ccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEecc
Q psy7665          75 LHTPYLVLAKARFLLPTLECQEVYHDG--R---FYDYL--DNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFV  147 (296)
Q Consensus        75 ~~~p~~v~~~~~~~~~~~~~~~~~~~~--~---~~~~~--~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~  147 (296)
                      .+.+|.+++++|+.+..++.++.....  .   ..+..  .........+|+|||+|+.|+++|..+++.|.+|+++|  
T Consensus       105 ~~~~d~lvlAtG~~~~~~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~--  182 (415)
T 3lxd_A          105 AIEYGKLIWATGGDPRRLSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLE--  182 (415)
T ss_dssp             EEEEEEEEECCCEECCCCBTTSSCCBTEECCCSHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEE--
T ss_pred             EEEeeEEEEccCCccCCCCCCCccccCEEEEcCHHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEe--
Confidence            567899999999876665544432111  1   11111  00000004589999999999999999999999999999  


Q ss_pred             CCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcE
Q psy7665         148 TPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKID  227 (296)
Q Consensus       148 ~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  227 (296)
                      +.+      .+-..                                  ..+            ..+...+...+++.||+
T Consensus       183 ~~~------~~l~~----------------------------------~~~------------~~~~~~l~~~l~~~GV~  210 (415)
T 3lxd_A          183 ALP------RVLAR----------------------------------VAG------------EALSEFYQAEHRAHGVD  210 (415)
T ss_dssp             SSS------STTTT----------------------------------TSC------------HHHHHHHHHHHHHTTCE
T ss_pred             cCC------chhhh----------------------------------hcC------------HHHHHHHHHHHHhCCCE
Confidence            443      11000                                  000            11122344556778999


Q ss_pred             EEcceE-EE-Ee-CC---EEEE-cceeEEEEeCeEEEcCCCCCCC
Q psy7665         228 YFNAKA-VF-VD-KH---RVKF-AGEERTVSAQNFIIAVGGRPTY  265 (296)
Q Consensus       228 ~~~~~~-~~-~~-~~---~v~v-~g~~~~~~a~~vV~AtG~~p~~  265 (296)
                      ++.+.. .. .. ..   .+.+ +|  .++.||.||+|+|.+|+.
T Consensus       211 i~~~~~v~~i~~~~~~v~~v~l~dG--~~i~aD~Vv~a~G~~p~~  253 (415)
T 3lxd_A          211 LRTGAAMDCIEGDGTKVTGVRMQDG--SVIPADIVIVGIGIVPCV  253 (415)
T ss_dssp             EEETCCEEEEEESSSBEEEEEESSS--CEEECSEEEECSCCEESC
T ss_pred             EEECCEEEEEEecCCcEEEEEeCCC--CEEEcCEEEECCCCccCh
Confidence            986532 22 22 22   3444 55  578999999999998875

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.65  E-value=3.9e-08  Score=90.63  Aligned_cols=62  Identities=27%  Similarity=0.341  Sum_probs=58.4

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI   63 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~   63 (296)
                      .+|+++|+++++|||+|++|++++|+|+.++++|+++.+.++|.+++++|||++|.+...+.
T Consensus       403 ~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~  464 (474)
T 1zmd_A          403 MVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAFREANL  464 (474)
T ss_dssp             EEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTCTHHHHHHHHH
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCCHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999977764

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.64  E-value=4.1e-08  Score=91.62  Aligned_cols=62  Identities=11%  Similarity=0.022  Sum_probs=58.1

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccC--cCCCCChHHHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDAL--IGIHPTCAEAISLSWI   63 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~--i~~~pt~~e~l~v~~~   63 (296)
                      .+|+++|+++++|||+|++|++++|+|+.++++|+++.+.++|.++  +++|||++|.+.....
T Consensus       452 ~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~~Pt~~e~~~~~~~  515 (523)
T 1mo9_A          452 FQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNPTHFIQLSRLRA  515 (523)
T ss_dssp             EEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSCCHHHHHHHHT
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHhCCcceECCCHHHHHHHHHH
Confidence            4789999999999999999999999999999999999999999999  9999999999976654

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.64  E-value=4.8e-08  Score=90.63  Aligned_cols=62  Identities=11%  Similarity=0.082  Sum_probs=58.3

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI   63 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~   63 (296)
                      .+|+++|+++++|||++++|++++|+|+.++++|+++.+.++|.+.+++|||++|.+...+.
T Consensus       401 ~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~  462 (499)
T 1xdi_A          401 FVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAVYPSLSGSITEAAR  462 (499)
T ss_dssp             EEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSBCCSSSTHHHHHHHHH
T ss_pred             EEEEEEECCCCEEEEEEEECCchHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHH
Confidence            36899999899999999999999999999999999999999999999999999999877664

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.64  E-value=3.9e-07  Score=85.49  Aligned_cols=35  Identities=20%  Similarity=0.374  Sum_probs=32.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      ..+||+||||||+|+++|..|++.|.+|+|||  +.+
T Consensus        25 ~~~dVlIVGaGpaGl~~A~~La~~G~~V~vlE--r~~   59 (549)
T 2r0c_A           25 IETDVLILGGGPVGMALALDLAHRQVGHLVVE--QTD   59 (549)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEC--SSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEe--CCC
Confidence            45799999999999999999999999999999  444

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.64  E-value=1.9e-08  Score=93.36  Aligned_cols=42  Identities=29%  Similarity=0.414  Sum_probs=36.2

Q ss_pred             CccccEEEECCChHHHHHHHHHHh-CCCcEEEEeccCCCCCCcccccCCee
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAAS-MNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~-~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      +..+||+|||||++||+||++|++ .|++|+|+|  +.+      .+||.|
T Consensus         8 ~~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE--~~~------~~GG~~   50 (513)
T 4gde_A            8 DISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVD--SNE------TPGGLA   50 (513)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEE--SSS------SCCGGG
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEE--CCC------CCcCCe
Confidence            467899999999999999999997 599999999  777      556643

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.63  E-value=5.3e-08  Score=89.55  Aligned_cols=62  Identities=18%  Similarity=0.088  Sum_probs=58.7

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI   63 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~   63 (296)
                      .+|+++|+++++|||++++|++++|+|+.++++|+++.+.++|.+++++|||++|.+...+.
T Consensus       392 ~~kl~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~  453 (467)
T 1zk7_A          392 FIKLVIEEGSHRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQ  453 (467)
T ss_dssp             EEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTSTTHHHHHHHH
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999988764

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.63  E-value=2.5e-08  Score=91.36  Aligned_cols=57  Identities=16%  Similarity=0.076  Sum_probs=53.6

Q ss_pred             CcceeecCCCCeEEEEEEEcC-ChhHHHHHHHHHHHcCCCHHHHccC-cCCCCChHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSN-NAGEITQGYALGVMLGAYKQDFDAL-IGIHPTCAEAI   58 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~-~a~e~i~~~~~~~~~~~~k~~l~~~-i~~~pt~~e~l   58 (296)
                      .+|+|+|++|++|||+|++|+ +|+|+|+.++++|+++.+.++|.++ +++||+++|.+
T Consensus       370 ~~kli~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~~  428 (452)
T 3oc4_A          370 LGKLIYDKVTQRVLGAQLCSKNNCLEKINTLALSIQTGQTLTDLLQKDYFYQPSLTNIY  428 (452)
T ss_dssp             EEEEEEETTTCBEEEEEEEESSCCTHHHHHHHHHHHTTCBHHHHHTCCCCCCTTTSCSS
T ss_pred             EEEEEEECCCCEEEEEEEEeCCCHHHHHHHHHHHHHcCCCHHHHHhhHhccCCCCCCch
Confidence            378999999999999999999 8999999999999999999999998 89999999954

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.62  E-value=1.3e-07  Score=88.25  Aligned_cols=31  Identities=23%  Similarity=0.427  Sum_probs=29.8

Q ss_pred             cccEEEECCChHHHHHHHHHHh------------CCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAAS------------MNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~------------~G~~V~iiE  145 (296)
                      .+||+|||||++|+++|..|++            .|.+|+|||
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE   49 (526)
T 2pyx_A            7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIE   49 (526)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEe
Confidence            4699999999999999999999            999999999

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.62  E-value=5.4e-07  Score=78.49  Aligned_cols=70  Identities=13%  Similarity=0.025  Sum_probs=46.6

Q ss_pred             ccceeeeeeeccccCCccchhhhccC--ccee--eccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665          75 LHTPYLVLAKARFLLPTLECQEVYHD--GRFY--DYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus        75 ~~~p~~v~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+.+|.+|+++|..+..++.+.....  ....  ...... .....+|+|||+|+.|+++|..|++.|.+|++++
T Consensus       109 ~~~~~~vv~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~-~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~  182 (325)
T 2q7v_A          109 EYRAKAVILATGADPRKLGIPGEDNFWGKGVSTCATCDGF-FYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIH  182 (325)
T ss_dssp             EEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGG-GGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEEC
T ss_pred             EEEeCEEEECcCCCcCCCCCCChhhccCceEEEeccCCHH-HcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEe
Confidence            35688999999976554443332210  0110  011111 1123589999999999999999999999999999

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.62  E-value=2.6e-07  Score=83.33  Aligned_cols=134  Identities=14%  Similarity=0.135  Sum_probs=82.5

Q ss_pred             ccceeeeeeeccccCCccchhhhccC--c---ceeec--cccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEecc
Q psy7665          75 LHTPYLVLAKARFLLPTLECQEVYHD--G---RFYDY--LDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFV  147 (296)
Q Consensus        75 ~~~p~~v~~~~~~~~~~~~~~~~~~~--~---~~~~~--~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~  147 (296)
                      .+.+|.+++++|..+..++.++....  .   ...+.  +... .....+|+|||+|+.|+++|..+++.|.+|++++  
T Consensus        96 ~~~~d~lvlAtG~~p~~~~i~g~~~~~v~~~~~~~d~~~l~~~-~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~--  172 (404)
T 3fg2_P           96 AIEYGHLVLATGARNRMLDVPNASLPDVLYLRTLDESEVLRQR-MPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVE--  172 (404)
T ss_dssp             EEECSEEEECCCEEECCCCSTTTTSTTEECCSSHHHHHHHHHH-GGGCSEEEEECCSHHHHHHHHHHHHTTCEEEEEC--
T ss_pred             EEECCEEEEeeCCCccCCCCCCCCCCcEEEECCHHHHHHHHHH-hhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEe--
Confidence            46788999999976555444332211  1   11111  1110 0123589999999999999999999999999999  


Q ss_pred             CCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcE
Q psy7665         148 TPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKID  227 (296)
Q Consensus       148 ~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  227 (296)
                      +.+      .+...                                  ..+            ..+...+...+++.||+
T Consensus       173 ~~~------~~~~~----------------------------------~~~------------~~~~~~l~~~l~~~GV~  200 (404)
T 3fg2_P          173 LAP------RVMAR----------------------------------VVT------------PEISSYFHDRHSGAGIR  200 (404)
T ss_dssp             SSS------STTTT----------------------------------TSC------------HHHHHHHHHHHHHTTCE
T ss_pred             CCC------cchhh----------------------------------ccC------------HHHHHHHHHHHHhCCcE
Confidence            433      11000                                  000            11122344566778999


Q ss_pred             EEcceE-EEE--eCCE---EEE-cceeEEEEeCeEEEcCCCCCCC
Q psy7665         228 YFNAKA-VFV--DKHR---VKF-AGEERTVSAQNFIIAVGGRPTY  265 (296)
Q Consensus       228 ~~~~~~-~~~--~~~~---v~v-~g~~~~~~a~~vV~AtG~~p~~  265 (296)
                      ++.+.. ...  +...   +.+ +|  .++.||.||+|+|.+|+.
T Consensus       201 i~~~~~v~~i~~~~~~v~~V~~~dG--~~i~aD~Vv~a~G~~p~~  243 (404)
T 3fg2_P          201 MHYGVRATEIAAEGDRVTGVVLSDG--NTLPCDLVVVGVGVIPNV  243 (404)
T ss_dssp             EECSCCEEEEEEETTEEEEEEETTS--CEEECSEEEECCCEEECC
T ss_pred             EEECCEEEEEEecCCcEEEEEeCCC--CEEEcCEEEECcCCccCH
Confidence            987632 222  2222   444 55  578999999999998765

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=98.62  E-value=1.5e-06  Score=81.31  Aligned_cols=69  Identities=13%  Similarity=0.104  Sum_probs=46.5

Q ss_pred             cceeeeeeeccc--cCCccchhhhcc--Ccce--eeccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665          76 HTPYLVLAKARF--LLPTLECQEVYH--DGRF--YDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus        76 ~~p~~v~~~~~~--~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..|.+|+|+|.  .+..+..++.+.  ....  ..... .....+.+|+|||+|.+|+++|..|++.|.+|++++
T Consensus       134 i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~~~~~~~~-~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~  208 (540)
T 3gwf_A          134 YRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWPE-GKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFV  208 (540)
T ss_dssp             EEEEEEEECCCSCCSBCCCCCTTGGGCCSEEEEGGGCCS-SCCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEE
T ss_pred             EEeCEEEECCcccccCCCCCCCCccccCCCEEEeecCCC-ccccccceEEEECCCchHHHHHHHHHhhCCEEEEEE
Confidence            568999999993  444444433321  1001  11111 112245689999999999999999999999999999

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.62  E-value=4.5e-07  Score=89.25  Aligned_cols=31  Identities=23%  Similarity=0.387  Sum_probs=29.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+||+|||||++|+++|++|+++|. +|+|+|
T Consensus         4 ~~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE   35 (830)
T 1pj5_A            4 TPRIVIIGAGIVGTNLADELVTRGWNNITVLD   35 (830)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCCEEEEC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEe
Confidence            4699999999999999999999998 999999

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.62  E-value=2.7e-07  Score=84.79  Aligned_cols=70  Identities=11%  Similarity=0.042  Sum_probs=47.4

Q ss_pred             ccceeeeeeecc--ccCCccchhhhcc-Cc-ce--eeccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665          75 LHTPYLVLAKAR--FLLPTLECQEVYH-DG-RF--YDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus        75 ~~~p~~v~~~~~--~~~~~~~~~~~~~-~~-~~--~~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ....|.||+|+|  +.+..+..++... .. .+  .+... .....+.+|+|||+|.+|+..|..|++.|.+|++++
T Consensus       152 ~~~~d~VVvAtG~~s~p~~p~ipG~~~~~g~~~hs~~~~~-~~~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~  227 (464)
T 2xve_A          152 SEEFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRD-ALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISC  227 (464)
T ss_dssp             EEEESEEEECCCSSSSBCCCCCBTTTTCCSEEEEGGGCCC-GGGGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEE
T ss_pred             EEEcCEEEECCCCCCCCccCCCCCcccCCceEEehhhhCC-HhHcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEE
Confidence            456899999999  5554444433322 11 11  11111 111134589999999999999999999999999999

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.61  E-value=5.8e-08  Score=89.11  Aligned_cols=61  Identities=18%  Similarity=0.272  Sum_probs=57.9

Q ss_pred             cceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665           3 LPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI   63 (296)
Q Consensus         3 ~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~   63 (296)
                      +|+++|+++++|||++++|++++|+|+.++++|+++.+.++|.+++++|||++|.+...+.
T Consensus       389 ~kl~~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~a~~  449 (458)
T 1lvl_A          389 VRVVARRDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGEAVQEAAL  449 (458)
T ss_dssp             EEEEEETTTCBEEEEEEEETTGGGHHHHHHHHHHHTCBHHHHHTSCCCTTCTTHHHHHHHH
T ss_pred             EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCCHHHHHHHHHH
Confidence            6889999999999999999999999999999999999999999999999999999977764

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.60  E-value=3.3e-07  Score=83.71  Aligned_cols=70  Identities=9%  Similarity=-0.051  Sum_probs=46.4

Q ss_pred             ccceeeeeeeccc--cCCccchhhhcc------Ccce--eeccccCCCCccccEEEECCChHHHHHHHHHHhCCCc-EEE
Q psy7665          75 LHTPYLVLAKARF--LLPTLECQEVYH------DGRF--YDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKK-VAL  143 (296)
Q Consensus        75 ~~~p~~v~~~~~~--~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~-V~i  143 (296)
                      ....|.||+++|+  .+..+..++...      ....  .+... .....+.+|+|||+|.+|++.|..|++.|.+ |++
T Consensus       163 ~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~-~~~~~~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l  241 (447)
T 2gv8_A          163 KDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFRE-PELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQ  241 (447)
T ss_dssp             EEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCC-GGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEE
T ss_pred             EEEeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCC-hhhcCCCEEEEEccCcCHHHHHHHHHHHhCCcEEE
Confidence            3568999999997  443333333221      0011  11111 1111345899999999999999999999999 999


Q ss_pred             Ee
Q psy7665         144 FD  145 (296)
Q Consensus       144 iE  145 (296)
                      ++
T Consensus       242 ~~  243 (447)
T 2gv8_A          242 SL  243 (447)
T ss_dssp             EC
T ss_pred             Ee
Confidence            99

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.59  E-value=7e-07  Score=77.12  Aligned_cols=70  Identities=17%  Similarity=0.218  Sum_probs=46.9

Q ss_pred             ccceeeeeeeccccCCccchhhhcc--Cccee--eccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665          75 LHTPYLVLAKARFLLPTLECQEVYH--DGRFY--DYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus        75 ~~~p~~v~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+.+|.+|+++|..+..++.++...  .....  ...... .....+|+|||+|++|+++|..|++.|.+|++++
T Consensus       101 ~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~  174 (310)
T 1fl2_A          101 VLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHCDGP-LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLE  174 (310)
T ss_dssp             EEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGG-GGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEEC
T ss_pred             EEEeCEEEECcCCCcCCCCCCChhhcccceeEEeccCcHh-hcCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEE
Confidence            4678899999997654444333221  01111  001111 1134589999999999999999999999999999

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.59  E-value=1e-06  Score=81.65  Aligned_cols=32  Identities=38%  Similarity=0.529  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      .+||+|||||.+|+++|+.|+++|++|+|+|+
T Consensus         3 ~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~   34 (501)
T 2qcu_A            3 TKDLIVIGGGINGAGIAADAAGRGLSVLMLEA   34 (501)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCEEEEEC
Confidence            47999999999999999999999999999993

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.57  E-value=4.8e-07  Score=78.31  Aligned_cols=70  Identities=20%  Similarity=0.185  Sum_probs=47.4

Q ss_pred             ccceeeeeeeccccCCccchhhhcc---Ccc-eeeccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665          75 LHTPYLVLAKARFLLPTLECQEVYH---DGR-FYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus        75 ~~~p~~v~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+.+|.+|+++|..+..++.++...   ... .....+.. .....+|+|||+|+.|+++|..|++.|.+|++++
T Consensus       111 ~~~~d~lvlAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~-~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~  184 (323)
T 3f8d_A          111 EFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVADAP-LFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIH  184 (323)
T ss_dssp             EEEEEEEEECCCCEECCCCCTTTTTTBTTTEESCHHHHGG-GGTTCEEEEECCSHHHHHHHHHHHHHSSEEEEEC
T ss_pred             EEEcCEEEECcCCCCccCCCCchhhhcCCceEEeccCCHh-HcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEE
Confidence            4568899999997755444333221   111 01111111 1234589999999999999999999999999999

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.56  E-value=1.5e-06  Score=79.33  Aligned_cols=32  Identities=28%  Similarity=0.396  Sum_probs=30.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-CcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMN-KKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE  145 (296)
                      ..+||+|||||++|+++|++|+++| .+|+|+|
T Consensus        22 ~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE   54 (448)
T 3axb_A           22 PRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVD   54 (448)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEE
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEc
Confidence            4689999999999999999999999 9999999

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.56  E-value=4.3e-07  Score=86.78  Aligned_cols=32  Identities=19%  Similarity=0.453  Sum_probs=30.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHh-CCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAAS-MNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~-~G~~V~iiE  145 (296)
                      ..+||+||||||+|+++|..|++ .|.+|+|||
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viE   63 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVE   63 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEEC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEe
Confidence            45799999999999999999999 999999999

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.56  E-value=3.9e-07  Score=84.66  Aligned_cols=32  Identities=22%  Similarity=0.332  Sum_probs=30.1

Q ss_pred             cccEEEECCChHHHHHHHHHHh---CCCcEEEEec
Q psy7665         115 DYDLCVIGGGSGGISAAKEAAS---MNKKVALFDF  146 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~---~G~~V~iiE~  146 (296)
                      .+||+|||||++|+++|+.|++   .|.+|+|||+
T Consensus         2 ~~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~   36 (511)
T 2weu_A            2 IRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVES   36 (511)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC
T ss_pred             cceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEec
Confidence            3699999999999999999999   9999999993

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.56  E-value=8.2e-07  Score=77.12  Aligned_cols=69  Identities=17%  Similarity=0.130  Sum_probs=45.6

Q ss_pred             cceeeeeeeccccCCccchhhhccC--cce--eeccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665          76 HTPYLVLAKARFLLPTLECQEVYHD--GRF--YDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus        76 ~~p~~v~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +.+|.+|+++|..+..++.+.....  ...  ....... .....+|+|||+|+.|++.|..|++.|.+|++++
T Consensus       113 ~~~~~li~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~-~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~  185 (319)
T 3cty_A          113 YHAKYVIITTGTTHKHLGVKGESEYFGKGTSYCSTCDGY-LFKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIE  185 (319)
T ss_dssp             EEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHHGG-GGBTSEEEEECCSHHHHHHHHHHTTTBSEEEEEC
T ss_pred             EEeCEEEECCCCCcccCCCCChHHhCCceEEEEEecchh-hcCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEE
Confidence            4678999999976554443322110  001  0001111 1123589999999999999999999999999999

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.55  E-value=2e-07  Score=80.66  Aligned_cols=72  Identities=15%  Similarity=0.085  Sum_probs=49.0

Q ss_pred             eccceeeeeeeccccCCccchhhhccC--ccee--ecccc-CCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665          74 KLHTPYLVLAKARFLLPTLECQEVYHD--GRFY--DYLDN-NFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus        74 ~~~~p~~v~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~-~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..+..+.+|+|+|+.+..++.++....  ....  ..... .......+|+|||||..|+++|..|++.|.+|++++
T Consensus       106 ~~~~~~~liiATG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~  182 (314)
T 4a5l_A          106 KEVLTKSVIIATGATAKRMHVPGEDKYWQNGVSACAICDGAVPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILH  182 (314)
T ss_dssp             CEEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEEC
T ss_pred             eEEEEeEEEEcccccccccCCCccccccccceeeehhhhhhhhhcCCCeEEEECCChHHHHHHHHHHHhCCeeeeec
Confidence            345678999999987665555443311  1111  11111 111134589999999999999999999999999999

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.55  E-value=4.6e-07  Score=78.34  Aligned_cols=70  Identities=17%  Similarity=0.097  Sum_probs=46.6

Q ss_pred             ccceeeeeeeccccCCccchhhhcc--Ccce--eeccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665          75 LHTPYLVLAKARFLLPTLECQEVYH--DGRF--YDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus        75 ~~~p~~v~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+..|.+|+++|..+..++.++...  ....  ....... .....+|+|||+|+.|+++|..|++.|.+|++++
T Consensus       100 ~~~~~~vv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~  173 (311)
T 2q0l_A          100 TFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGF-FYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIH  173 (311)
T ss_dssp             EEEEEEEEECCCEEECCCCCBTHHHHBTTTEESCHHHHGG-GGTTSEEEEECCSHHHHHHHHHHHTTSSEEEEEC
T ss_pred             EEECCEEEECCCCCCCCCCCCChhhccCCcEEEeecCChh-hcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEe
Confidence            4678899999997655444333211  0001  0011111 1123589999999999999999999999999999

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.55  E-value=3.9e-07  Score=82.89  Aligned_cols=70  Identities=23%  Similarity=0.141  Sum_probs=48.4

Q ss_pred             ccceeeeeeeccccCCccchhhhcc-----Cc---ceeec--cccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEE
Q psy7665          75 LHTPYLVLAKARFLLPTLECQEVYH-----DG---RFYDY--LDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALF  144 (296)
Q Consensus        75 ~~~p~~v~~~~~~~~~~~~~~~~~~-----~~---~~~~~--~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~ii  144 (296)
                      .+.+|.+++++|..+..++.++...     ..   ...+.  +... .....+|+|||||+.|+++|..|++.|.+|+++
T Consensus       100 ~~~~d~lviAtG~~p~~~~i~G~~~~~~~~v~~~~~~~d~~~l~~~-l~~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv  178 (431)
T 1q1r_A          100 ALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQ-LIADNRLVVIGGGYIGLEVAATAIKANMHVTLL  178 (431)
T ss_dssp             EEECSEEEECCCEEECCCGGGTTHHHHSTTEEESSSHHHHHHHHHT-CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             EEECCEEEEcCCCCccCCCCCCcccCCCceEEEECCHHHHHHHHHH-hhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence            4678999999998766555443221     11   11111  1111 012458999999999999999999999999999


Q ss_pred             e
Q psy7665         145 D  145 (296)
Q Consensus       145 E  145 (296)
                      |
T Consensus       179 ~  179 (431)
T 1q1r_A          179 D  179 (431)
T ss_dssp             C
T ss_pred             E
Confidence            9

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.55  E-value=9.6e-07  Score=76.78  Aligned_cols=70  Identities=17%  Similarity=0.234  Sum_probs=46.6

Q ss_pred             cceeeeeeeccc---cCCccchhhhcc--CcceeeccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665          76 HTPYLVLAKARF---LLPTLECQEVYH--DGRFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus        76 ~~p~~v~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +.+|.+|+++|.   .+..++.++...  .......+.........+|+|||+|+.|+++|..|++.|.+|++++
T Consensus       110 ~~~d~vVlAtG~~~~~p~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~  184 (332)
T 3lzw_A          110 HYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHYFVDDLQKFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIH  184 (332)
T ss_dssp             EEEEEEEECCTTSCCEECCCCCTTGGGGBTTTEESSCSCGGGGBTCEEEEECSSHHHHHHHHHHTTTBSEEEEEC
T ss_pred             EEeCEEEECCCCCcCCCCCCCCCChhhccCceEEEecCCHHHcCCCEEEEECCCHhHHHHHHHHHhhCCeEEEEE
Confidence            458899999998   554444433322  0111111111101124589999999999999999999999999999

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.55  E-value=1.2e-07  Score=87.36  Aligned_cols=62  Identities=27%  Similarity=0.309  Sum_probs=58.1

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI   63 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~   63 (296)
                      .+|+++|+++++|||++++|++++|+|+.++.+|+++.+.+++.+++++|||++|.+...+.
T Consensus       408 ~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~  469 (478)
T 1v59_A          408 FVKILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSEAFKEANM  469 (478)
T ss_dssp             EEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCTTHHHHHHHH
T ss_pred             EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCCCCCCCHHHHHHHHHH
Confidence            36889998899999999999999999999999999999999999999999999999977654

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.54  E-value=8.9e-07  Score=78.28  Aligned_cols=134  Identities=17%  Similarity=0.230  Sum_probs=79.4

Q ss_pred             ccceeeeeeeccc---cCCccchhh-hcc--CcceeeccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEeccC
Q psy7665          75 LHTPYLVLAKARF---LLPTLECQE-VYH--DGRFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVT  148 (296)
Q Consensus        75 ~~~p~~v~~~~~~---~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~  148 (296)
                      .+..|.+|+++|.   .+..++.++ ...  ...+...+.........+|+|||+|++|+++|..|++.|.+|++++  +
T Consensus       117 ~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~~v~~~~~~~~~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~--~  194 (360)
T 3ab1_A          117 VYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYAVKSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVH--R  194 (360)
T ss_dssp             EEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTTTEESSCSCGGGGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEEC--S
T ss_pred             EEEeeEEEEccCCCcCCCCCCCCCCchhhCcCceEEEecCCHHHcCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEE--c
Confidence            3567889999997   333333333 111  1011111111101124589999999999999999999999999999  4


Q ss_pred             CCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEE
Q psy7665         149 PSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDY  228 (296)
Q Consensus       149 ~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  228 (296)
                      .+      .+..                                   .   +..           ...+...+++.++++
T Consensus       195 ~~------~~~~-----------------------------------~---~~~-----------~~~l~~~~~~~gv~i  219 (360)
T 3ab1_A          195 GH------EFQG-----------------------------------H---GKT-----------AHEVERARANGTIDV  219 (360)
T ss_dssp             SS------SCSS-----------------------------------C---SHH-----------HHSSHHHHHHTSEEE
T ss_pred             CC------CCCC-----------------------------------C---HHH-----------HHHHHHHhhcCceEE
Confidence            33      1100                                   0   001           111233455678999


Q ss_pred             EcceE-EEE--eCC---EEEE---cceeEEEEeCeEEEcCCCCCCC
Q psy7665         229 FNAKA-VFV--DKH---RVKF---AGEERTVSAQNFIIAVGGRPTY  265 (296)
Q Consensus       229 ~~~~~-~~~--~~~---~v~v---~g~~~~~~a~~vV~AtG~~p~~  265 (296)
                      +.+.. ...  +..   .+.+   +|+...+.+|.||+|+|..|..
T Consensus       220 ~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~  265 (360)
T 3ab1_A          220 YLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNL  265 (360)
T ss_dssp             ESSEEEEEEEEETTEEEEEEEEETTCCEEEEECSEEEECCCBCCSC
T ss_pred             EcCcCHHHhccCCCceEEEEEEecCCCeEEEeCCEEEECCCCCCCH
Confidence            88743 222  222   3444   3444678999999999988765

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.53  E-value=5.4e-08  Score=89.61  Aligned_cols=60  Identities=12%  Similarity=0.022  Sum_probs=48.3

Q ss_pred             CcceeecCCCCeEEEEEEEcC---ChhHHHHHHHHHHHcCCCHHHHccCcCCC-CChHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSN---NAGEITQGYALGVMLGAYKQDFDALIGIH-PTCAEAISLS   61 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~---~a~e~i~~~~~~~~~~~~k~~l~~~i~~~-pt~~e~l~v~   61 (296)
                      .+|+|+|++|++|||+|++|+   .++|+|+.++++|+++++.++|.+++++| |+++|.+...
T Consensus       387 ~~kli~~~~~~~ilG~~~~g~~~~~~~~~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~~~~~  450 (472)
T 3iwa_A          387 TLQLVVDRPTRRVLGIQGFSTLGDALTARINAVATMLASKPTVEDISNAEVVYSPPFASAMDIV  450 (472)
T ss_dssp             EEEEEEETTTCBEEEEEEEESCHHHHHHHHHHHHHHHTTCCBHHHHHTCCCC--------CCHH
T ss_pred             EEEEEEECCCCEEEEEEEECCCcccHHHHHHHHHHHHHcCCCHHHHhcccccCCCCCCCcccHH
Confidence            368999999999999999999   55999999999999999999999999998 9999976433

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.53  E-value=7.2e-07  Score=77.84  Aligned_cols=71  Identities=17%  Similarity=0.092  Sum_probs=47.1

Q ss_pred             ccceeeeeeeccccCCccchhhhccC------ccee--eccccCC-CCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665          75 LHTPYLVLAKARFLLPTLECQEVYHD------GRFY--DYLDNNF-QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus        75 ~~~p~~v~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~-~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+..|.+|+++|..+..++.+.....      ....  ....... .....+|+|||+|+.|+++|..|++.|.+|++++
T Consensus       110 ~~~~~~vv~A~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~  189 (333)
T 1vdc_A          110 AILADAVILAIGAVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIH  189 (333)
T ss_dssp             EEEEEEEEECCCEEECCCCCBTCSSSSSCCBTTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEEC
T ss_pred             EEEcCEEEECCCCCcCCCCCCCccccccccccCcEEEeccCccchhhcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEe
Confidence            46788999999976554443332220      0110  0111110 0234589999999999999999999999999999

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.53  E-value=6.7e-08  Score=88.41  Aligned_cols=57  Identities=14%  Similarity=0.076  Sum_probs=52.8

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccC-cCCCCChHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDAL-IGIHPTCAEAI   58 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~-i~~~pt~~e~l   58 (296)
                      .+|+|+|++|++|||+|++|++|+|+|+.++++|+++.+.++|.++ +.+||+.++.+
T Consensus       373 ~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~p~~~~~~  430 (449)
T 3kd9_A          373 WLKGVVDNETNRLLGVQVVGSDILPRIDTAAAMLMAGFTTKDAFFTDLAYAPPFAPVW  430 (449)
T ss_dssp             EEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTCCCCCBTTTBCSS
T ss_pred             EEEEEEECCCCEEEEEEEEChHHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCCCch
Confidence            3789999999999999999999999999999999999999999998 56889998755

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.53  E-value=2.1e-06  Score=80.96  Aligned_cols=33  Identities=36%  Similarity=0.563  Sum_probs=30.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ..+||+|||||.+|+.+|+.|+++|++|+|+|+
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~   63 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAASGIKTGLIEM   63 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeC
Confidence            357999999999999999999999999999993

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.52  E-value=7.2e-08  Score=91.46  Aligned_cols=59  Identities=41%  Similarity=0.677  Sum_probs=54.4

Q ss_pred             cceeecC-CCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHH
Q psy7665           3 LPKLGGS-EVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLS   61 (296)
Q Consensus         3 ~~~~~~~-~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~   61 (296)
                      +|+++|+ ++++|||+|++|++|+|+|+.++++|+++++.++|.+.+++|||++|.+...
T Consensus       522 ~kli~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~  581 (598)
T 2x8g_A          522 MKLVCRKSDNMRVLGLHVLGPNAGEITQGYAVAIKMGATKADFDRTIGIHPTCSETFTTL  581 (598)
T ss_dssp             EEEEEETTTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGGGSC
T ss_pred             EEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCCHHHHHHHH
Confidence            5888985 6899999999999999999999999999999999999999999999977533

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.51  E-value=6.6e-07  Score=78.04  Aligned_cols=71  Identities=15%  Similarity=0.074  Sum_probs=47.1

Q ss_pred             ccceeeeeeeccccCCccchhhhcc--Cccee--eccccC-CCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665          75 LHTPYLVLAKARFLLPTLECQEVYH--DGRFY--DYLDNN-FQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus        75 ~~~p~~v~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~-~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+..|.+|+++|..+..+..++...  ...+.  ...... ......+|+|||+|++|+++|..|++.|.+|++++
T Consensus       128 ~~~~d~vvlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~  203 (338)
T 3itj_A          128 PVTTDAIILATGASAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLV  203 (338)
T ss_dssp             CEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEEC
T ss_pred             EEEeCEEEECcCCCcCCCCCCCchhccCccEEEchhcccchhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEE
Confidence            4578899999997655444333221  11111  000111 01134589999999999999999999999999999

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.51  E-value=5e-07  Score=77.99  Aligned_cols=70  Identities=14%  Similarity=0.060  Sum_probs=47.3

Q ss_pred             ccceeeeeeeccccCCccchhhhccC--ccee--eccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665          75 LHTPYLVLAKARFLLPTLECQEVYHD--GRFY--DYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus        75 ~~~p~~v~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+.+|.+++++|..+..+..++....  ....  ...... .....+|+|||+|+.|+++|..|++.|.+|++++
T Consensus       104 ~~~~d~lvlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~  177 (315)
T 3r9u_A          104 TELAKAVIVCTGSAPKKAGFKGEDEFFGKGVSTCATCDGF-FYKNKEVAVLGGGDTALEEALYLANICSKIYLIH  177 (315)
T ss_dssp             EEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHHGG-GGTTSEEEEECCBHHHHHHHHHHHTTSSEEEEEC
T ss_pred             EEEeCEEEEeeCCCCCCCCCCChhhcCCCeEEeeeccccc-ccCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEE
Confidence            46788999999986554444333210  1111  011111 1134589999999999999999999999999999

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.51  E-value=5.9e-06  Score=77.35  Aligned_cols=71  Identities=15%  Similarity=0.198  Sum_probs=45.8

Q ss_pred             ccceeeeeeecc--ccCCccchhhhcc--Ccce--eecccc------CCCCccccEEEECCChHHHHHHHHHHhCCCcEE
Q psy7665          75 LHTPYLVLAKAR--FLLPTLECQEVYH--DGRF--YDYLDN------NFQTYDYDLCVIGGGSGGISAAKEAASMNKKVA  142 (296)
Q Consensus        75 ~~~p~~v~~~~~--~~~~~~~~~~~~~--~~~~--~~~~~~------~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~  142 (296)
                      .+..|.+|+++|  +.+..+..++.+.  ....  ......      .....+.+|+|||+|++|+++|..|++.+.+|+
T Consensus       133 ~~~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vt  212 (545)
T 3uox_A          133 VVTCRFLISATGPLSASRMPDIKGIDSFKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELY  212 (545)
T ss_dssp             EEEEEEEEECCCSCBC---CCCTTGGGCCSEEEEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEE
T ss_pred             EEEeCEEEECcCCCCCCcCCCCCCccccCCCeEEcccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEE
Confidence            357899999999  5544444444332  1001  011110      011244689999999999999999999999999


Q ss_pred             EEe
Q psy7665         143 LFD  145 (296)
Q Consensus       143 iiE  145 (296)
                      +++
T Consensus       213 v~~  215 (545)
T 3uox_A          213 VFQ  215 (545)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            999

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.50  E-value=1.6e-07  Score=84.21  Aligned_cols=30  Identities=27%  Similarity=0.476  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      +|+||||||+|+++|..|++.|++|+|||+
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er   32 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYER   32 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEec
Confidence            799999999999999999999999999993

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.49  E-value=8.3e-07  Score=83.28  Aligned_cols=32  Identities=22%  Similarity=0.351  Sum_probs=30.3

Q ss_pred             cccEEEECCChHHHHHHHHHHh---CCCcEEEEec
Q psy7665         115 DYDLCVIGGGSGGISAAKEAAS---MNKKVALFDF  146 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~---~G~~V~iiE~  146 (296)
                      .+||+|||||++|+++|..|++   .|.+|+|||+
T Consensus        25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~   59 (550)
T 2e4g_A           25 IDKILIVGGGTAGWMAASYLGKALQGTADITLLQA   59 (550)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEEC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeC
Confidence            5799999999999999999999   9999999993

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.49  E-value=6.7e-08  Score=89.47  Aligned_cols=39  Identities=28%  Similarity=0.408  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      ++|||||||++||+||.+|+++|++|+|+|  +.+      .+||.+
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlE--a~~------~~GG~~   40 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLE--QRD------KPGGRA   40 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEC--CC-------------
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEc--cCC------CCCCcE
Confidence            389999999999999999999999999999  777      566643

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.47  E-value=1.9e-06  Score=74.63  Aligned_cols=70  Identities=16%  Similarity=0.108  Sum_probs=48.8

Q ss_pred             ccceeeeeeeccccCCccchhhhccC--ccee--eccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665          75 LHTPYLVLAKARFLLPTLECQEVYHD--GRFY--DYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus        75 ~~~p~~v~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+..|.+|+++|+.+..+++++....  ....  ...+.. ...+.+|+|||||+.|+++|..|++.|.+|+|+|
T Consensus       102 ~~~~d~liiAtGs~~~~~~ipG~~~~~~~~v~~~~~~~~~-~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~  175 (312)
T 4gcm_A          102 ELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGA-FFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVH  175 (312)
T ss_dssp             EEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGG-GGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEEC
T ss_pred             EEEeceeEEcccCccCcCCCCChhhhCCccEEeeeccCcc-ccCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEe
Confidence            35679999999987766655543321  1111  111111 1123489999999999999999999999999999

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.46  E-value=6.8e-07  Score=78.29  Aligned_cols=70  Identities=20%  Similarity=0.174  Sum_probs=47.0

Q ss_pred             ccceeeeeeeccccCCccchhhhccC--cceee--ccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665          75 LHTPYLVLAKARFLLPTLECQEVYHD--GRFYD--YLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus        75 ~~~p~~v~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+.+|.+|+++|..+..++.++....  ..+..  ..... .....+|+|||+|+.|+++|..|++.|.+|++++
T Consensus       112 ~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~-~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~  185 (335)
T 2a87_A          112 THRARAVILAMGAAARYLQVPGEQELLGRGVSSCATCDGF-FFRDQDIAVIGGGDSAMEEATFLTRFARSVTLVH  185 (335)
T ss_dssp             EEEEEEEEECCCEEECCCCCTHHHHTBTTTEESCHHHHGG-GGTTCEEEEECSSHHHHHHHHHHTTTCSEEEEEC
T ss_pred             EEEeCEEEECCCCCccCCCCCchHhccCCceEEeeccchh-hcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEE
Confidence            46789999999976554443332210  11110  01110 1124589999999999999999999999999999

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.46  E-value=5.9e-07  Score=83.31  Aligned_cols=135  Identities=19%  Similarity=0.222  Sum_probs=82.8

Q ss_pred             ccceeeeeeeccccCCccchhhhccCc-ce---ee------cc----------ccC--CCCccccEEEECCChHHHHHHH
Q psy7665          75 LHTPYLVLAKARFLLPTLECQEVYHDG-RF---YD------YL----------DNN--FQTYDYDLCVIGGGSGGISAAK  132 (296)
Q Consensus        75 ~~~p~~v~~~~~~~~~~~~~~~~~~~~-~~---~~------~~----------~~~--~~~~~~dVvVIGgG~aG~~aA~  132 (296)
                      .+.+|.+++|+|+.+....+++..... .+   .+      .+          ...  .......++|||||+.|+++|.
T Consensus       155 ~i~YD~LViAtGs~~~~~~ipG~~e~a~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~  234 (502)
T 4g6h_A          155 EIKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAG  234 (502)
T ss_dssp             EEECSEEEECCCCEECCTTCTTHHHHCEECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHH
T ss_pred             EEeCCEEEEcCCcccccCCccCcccccCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHH
Confidence            356899999999877766655533211 00   00      00          000  0001236999999999999999


Q ss_pred             HHHhCC--------------CcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCC
Q psy7665         133 EAASMN--------------KKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFT  198 (296)
Q Consensus       133 ~l~~~G--------------~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  198 (296)
                      .|++.+              .+|+++|  ..+      .+-.                                   .++
T Consensus       235 ~l~~~~~~~l~~~~~~~~~~~~V~lve--~~~------~il~-----------------------------------~~~  271 (502)
T 4g6h_A          235 ELQDYVHQDLRKFLPALAEEVQIHLVE--ALP------IVLN-----------------------------------MFE  271 (502)
T ss_dssp             HHHHHHHHTHHHHCHHHHHHCEEEEEC--SSS------SSST-----------------------------------TSC
T ss_pred             HHHHHHHHHHHhhcccccccceeEEec--ccc------cccc-----------------------------------CCC
Confidence            987643              6799999  443      1100                                   000


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEE-EEeCCEEEE-----cce--eEEEEeCeEEEcCCCCCC
Q psy7665         199 WKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAV-FVDKHRVKF-----AGE--ERTVSAQNFIIAVGGRPT  264 (296)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~v~v-----~g~--~~~~~a~~vV~AtG~~p~  264 (296)
                                  ..+...+.+.|++.||+++.++.. ..+...+.+     ++.  ..++.||.||.|+|.+|+
T Consensus       272 ------------~~~~~~~~~~L~~~GV~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~  333 (502)
T 4g6h_A          272 ------------KKLSSYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKAR  333 (502)
T ss_dssp             ------------HHHHHHHHHHHHHTTCEEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCEECC
T ss_pred             ------------HHHHHHHHHHHHhcceeeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCCcCC
Confidence                        122233456678889999987653 355555544     232  257999999999998764

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.43  E-value=1.7e-07  Score=85.91  Aligned_cols=41  Identities=29%  Similarity=0.367  Sum_probs=36.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      ..+||+|||||++||.||..|++.|++|+|+|  +++      .+||.+
T Consensus        10 ~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE--~~~------~~GG~~   50 (453)
T 2bcg_G           10 TDYDVIVLGTGITECILSGLLSVDGKKVLHID--KQD------HYGGEA   50 (453)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHTTCCEEEEC--SSS------SSCGGG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEe--CCC------CCCccc
Confidence            45799999999999999999999999999999  777      666654

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=98.43  E-value=2.7e-06  Score=81.59  Aligned_cols=33  Identities=27%  Similarity=0.437  Sum_probs=30.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHh-----CCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAAS-----MNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~-----~G~~V~iiE~  146 (296)
                      ..+||+||||||+|+++|..|++     .|.+|+|||+
T Consensus         7 ~~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~   44 (665)
T 1pn0_A            7 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDK   44 (665)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECS
T ss_pred             CCCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeC
Confidence            35799999999999999999999     9999999993

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=98.42  E-value=4e-06  Score=78.61  Aligned_cols=70  Identities=16%  Similarity=0.136  Sum_probs=47.5

Q ss_pred             cceeeeeeecc--ccCCccchhhhccC--cce--eeccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665          76 HTPYLVLAKAR--FLLPTLECQEVYHD--GRF--YDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus        76 ~~p~~v~~~~~--~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..|.+|+++|  +.+..+..++.+.-  ...  ...........+.+|+|||+|.+|+++|..|++.+.+|++++
T Consensus       146 i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~  221 (549)
T 4ap3_A          146 VSARFLVVAAGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQ  221 (549)
T ss_dssp             EEEEEEEECCCSEEECCCCCCTTGGGCCSEEEEGGGCCTTCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEE
T ss_pred             EEeCEEEECcCCCCCCCCCCCCCcccCCCceEEeccccccccccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEE
Confidence            57899999999  55554444443321  011  111101111245689999999999999999999999999999

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.40  E-value=1.6e-06  Score=76.78  Aligned_cols=67  Identities=16%  Similarity=0.109  Sum_probs=43.9

Q ss_pred             cceeeeeeeccccCCccchhhhccCcceeeccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665          76 HTPYLVLAKARFLLPTLECQEVYHDGRFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus        76 ~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..|.+|+++|..+. +..+. ............. .....+|+|||+|++|+++|..|++.|.+|++++
T Consensus       130 ~~~d~vVlAtG~~~~-p~ip~-~~~~~~~~~~~~~-~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~  196 (369)
T 3d1c_A          130 YHADYIFVATGDYNF-PKKPF-KYGIHYSEIEDFD-NFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYT  196 (369)
T ss_dssp             EEEEEEEECCCSTTS-BCCCS-SSCEEGGGCSCGG-GSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             EEeCEEEECCCCCCc-cCCCC-CceechhhcCChh-hcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEe
Confidence            567899999997532 11111 1111111111111 1123489999999999999999999999999999

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.38  E-value=2.4e-07  Score=83.90  Aligned_cols=38  Identities=24%  Similarity=0.457  Sum_probs=34.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      ||+|||||++|++||++|+++|++|+|+|  +.+      .+||.+
T Consensus         2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE--~~~------~~GG~~   39 (421)
T 3nrn_A            2 RAVVVGAGLGGLLAGAFLARNGHEIIVLE--KSA------MIGGRF   39 (421)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEEEC--SSS------SSCTTS
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEe--CCC------CCCcee
Confidence            89999999999999999999999999999  666      556644

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.37  E-value=2.6e-07  Score=86.04  Aligned_cols=35  Identities=17%  Similarity=0.336  Sum_probs=32.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-CcEEEEeccCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMN-KKVALFDFVTPS  150 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE~~~~~  150 (296)
                      ..+||+|||||++|++||++|++.| ++|+|+|  +.+
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlE--a~~   42 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLE--ARD   42 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHTTCCSEEEEC--SSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEe--CCC
Confidence            4579999999999999999999999 9999999  677

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.37  E-value=2.9e-07  Score=82.03  Aligned_cols=42  Identities=17%  Similarity=0.365  Sum_probs=37.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCC-CCCCcccccCCeee
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTP-SQHGTVWGLGGTCV  163 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~-~~~g~~~~~GG~~~  163 (296)
                      ..+||+|||||++|+.+|+.|+++|++|+|+|  +. +      .+||.|.
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE--~~~~------~vGGr~~   85 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILE--ANAN------RVGGRIK   85 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEEC--SCSS------CCBTTCC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEe--cccc------ccCCcee
Confidence            45699999999999999999999999999999  66 6      7788664

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.36  E-value=1.2e-06  Score=87.55  Aligned_cols=72  Identities=14%  Similarity=0.052  Sum_probs=48.8

Q ss_pred             eccceeeeeeeccccCCccchhhhccCc-----ceeeccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665          74 KLHTPYLVLAKARFLLPTLECQEVYHDG-----RFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus        74 ~~~~p~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..+.+|.+|+|+|+.+..++.++.....     .+.+++.......+..|+|||+|+.|+++|..|++.|.+|+|+|
T Consensus       238 ~~i~~d~lVlATGs~p~~~~ipG~~~~gv~~~~~~~~~l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~  314 (965)
T 2gag_A          238 WHIRAKQVVLATGAHERPIVFENNDRPGIMLAGAVRSYLNRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVID  314 (965)
T ss_dssp             EEEEEEEEEECCCEEECCCCCBTCCSTTEEEHHHHHHHHHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEE
T ss_pred             EEEECCEEEECCCCccCCCCCCCCCCCCEEEhHHHHHHHHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEE
Confidence            3578899999999865444433322111     11122221111123589999999999999999999999999999

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.35  E-value=3.4e-07  Score=82.19  Aligned_cols=41  Identities=27%  Similarity=0.503  Sum_probs=36.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      ..+||+|||||++|+++|++|++.|.+|+|+|  +.+      .+||.|
T Consensus        28 ~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E--~~~------~~GG~~   68 (397)
T 3hdq_A           28 KGFDYLIVGAGFAGSVLAERLASSGQRVLIVD--RRP------HIGGNA   68 (397)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEC--SSS------SSSGGG
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCceEEEe--ccC------CCCCcc
Confidence            56899999999999999999999999999999  666      566655

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.35  E-value=3.8e-07  Score=82.51  Aligned_cols=35  Identities=17%  Similarity=0.400  Sum_probs=32.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-CcEEEEeccCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMN-KKVALFDFVTPS  150 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE~~~~~  150 (296)
                      ..+||+|||||++|++||++|++.| ++|+|+|  +.+
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E--~~~   40 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILE--RTD   40 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEEC--SSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEE--CCC
Confidence            3469999999999999999999999 9999999  667

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.34  E-value=3.6e-07  Score=83.61  Aligned_cols=57  Identities=7%  Similarity=0.128  Sum_probs=53.3

Q ss_pred             cceeecCCCCeEEEEEEEcC-ChhHHHHHHHHHHHcCCCHHHHccC-cCCCCChHHHHH
Q psy7665           3 LPKLGGSEVSTFITAEISSN-NAGEITQGYALGVMLGAYKQDFDAL-IGIHPTCAEAIS   59 (296)
Q Consensus         3 ~~~~~~~~~~~ilG~~~~g~-~a~e~i~~~~~~~~~~~~k~~l~~~-i~~~pt~~e~l~   59 (296)
                      +|+++|+++++|||+|++|+ +++|+|+.++++|+++.+.+++... +++|||++|.+.
T Consensus       376 ~k~~~~~~~~~ilG~~~~g~~~~~~~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~~  434 (452)
T 2cdu_A          376 MSLVYDPKTRVILGGALSSMHDVSQSANVLSVCIQNKNTIDDLAMVDMLFQPQFDRPFN  434 (452)
T ss_dssp             EEEEECTTTCBEEEEEEEESSCCHHHHHHHHHHHHTTCBHHHHHHSCCCCCTTTCCSSC
T ss_pred             EEEEEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhhhhccCCCCCchHH
Confidence            68899998999999999999 8999999999999999999999986 899999998653

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.34  E-value=3.4e-06  Score=78.62  Aligned_cols=70  Identities=17%  Similarity=0.214  Sum_probs=46.8

Q ss_pred             ccceeeeeeeccccCCccchhhhcc--Cccee--eccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665          75 LHTPYLVLAKARFLLPTLECQEVYH--DGRFY--DYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus        75 ~~~p~~v~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+.++.+|+++|..+..+..++...  .....  ...... .....+|+|||||.+|+++|..|++.|.+|++++
T Consensus       312 ~~~~d~vVlAtG~~~~~~~ipG~~~~~~~~v~~~~~~~~~-~~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~  385 (521)
T 1hyu_A          312 VLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDGP-LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLE  385 (521)
T ss_dssp             EEEEEEEEECCCEEECCCCCTTTTTTTTTTEECCTTCCGG-GGBTSEEEEECCSHHHHHHHHHHHHHBSEEEEEC
T ss_pred             EEEcCEEEECCCCCcCCCCCCChhhhcCceEEEeecCchh-hcCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEE
Confidence            3568899999997655444333221  00111  011111 1134589999999999999999999999999999

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.34  E-value=3.3e-07  Score=82.52  Aligned_cols=40  Identities=30%  Similarity=0.614  Sum_probs=35.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhC-CCcEEEEeccCCCCCCcccccCCee
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASM-NKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~-G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      .+||+|||||++|+.+|++|++. |++|+|+|  +.+      .+||.|
T Consensus         7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E--~~~------~~GG~~   47 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLE--RRP------HIGGNA   47 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHHSCCCEEEEC--SSS------SSSGGG
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEe--CCC------CCCCee
Confidence            57999999999999999999999 99999999  666      566655

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.33  E-value=4.1e-07  Score=84.71  Aligned_cols=34  Identities=29%  Similarity=0.522  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      .+||+|||||++|++||++|++.|++|+|+|  +.+
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE--~~~   37 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLE--ARD   37 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHTTCCEEEEC--SSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCEEEEe--CCC
Confidence            4699999999999999999999999999999  666

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=98.31  E-value=4e-07  Score=83.64  Aligned_cols=33  Identities=27%  Similarity=0.484  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC--cEEEEeccCCC
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK--KVALFDFVTPS  150 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE~~~~~  150 (296)
                      +||+|||||.+|++||++|+++|.  +|+|+|  +.+
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlE--a~~   37 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVE--SSE   37 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEEC--SSS
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEe--CCC
Confidence            599999999999999999999999  999999  666

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=98.30  E-value=4.9e-07  Score=82.53  Aligned_cols=35  Identities=23%  Similarity=0.474  Sum_probs=32.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      ..+||+|||||++|++||++|++.|++|+|+|  +.+
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E--~~~   38 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRKAGLSVAVIE--ARD   38 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEC--SSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEE--CCC
Confidence            35799999999999999999999999999999  666

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.30  E-value=2.3e-06  Score=79.20  Aligned_cols=135  Identities=19%  Similarity=0.202  Sum_probs=80.4

Q ss_pred             ccceeeeeeeccccCCccchhhh------ccCcce---eec--cccCCCCccccEEEECCChHHHHHHHHHHh----CCC
Q psy7665          75 LHTPYLVLAKARFLLPTLECQEV------YHDGRF---YDY--LDNNFQTYDYDLCVIGGGSGGISAAKEAAS----MNK  139 (296)
Q Consensus        75 ~~~p~~v~~~~~~~~~~~~~~~~------~~~~~~---~~~--~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~----~G~  139 (296)
                      .+.+|.+++|+|+.+..++....      .....+   .+.  +... .....+|+|||||+.|+++|..|++    .|.
T Consensus       130 ~i~yd~lviATGs~p~~~~~~~~~~~~~~~~v~~~~~~~d~~~l~~~-~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~  208 (493)
T 1m6i_A          130 QITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKI-SREVKSITIIGGGFLGSELACALGRKARALGT  208 (493)
T ss_dssp             EEEEEEEEECCCEEECCCHHHHTSCHHHHHTEEECCSHHHHHHHHHH-HHHCSEEEEECCSHHHHHHHHHHHHHHHHHTC
T ss_pred             EEECCEEEECCCCCCCCCCCcccccccccCceEEEcCHHHHHHHHHH-hhcCCeEEEECCCHHHHHHHHHHHhhhhhcCC
Confidence            36789999999987665543321      011011   111  1100 0123489999999999999999987    478


Q ss_pred             cEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHH
Q psy7665         140 KVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEK  219 (296)
Q Consensus       140 ~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (296)
                      +|++++  +.+      ...+     .                             .++            ..+...+..
T Consensus       209 ~V~~v~--~~~------~~~~-----~-----------------------------~l~------------~~~~~~~~~  234 (493)
T 1m6i_A          209 EVIQLF--PEK------GNMG-----K-----------------------------ILP------------EYLSNWTME  234 (493)
T ss_dssp             EEEEEC--SSS------STTT-----T-----------------------------TSC------------HHHHHHHHH
T ss_pred             EEEEEe--cCc------cccc-----c-----------------------------cCC------------HHHHHHHHH
Confidence            899999  332      0000     0                             001            011223345


Q ss_pred             HHHHCCcEEEcceE-EEE--eCCE--EEE-cceeEEEEeCeEEEcCCCCCCCC
Q psy7665         220 ELEKNKIDYFNAKA-VFV--DKHR--VKF-AGEERTVSAQNFIIAVGGRPTYP  266 (296)
Q Consensus       220 ~~~~~~v~~~~~~~-~~~--~~~~--v~v-~g~~~~~~a~~vV~AtG~~p~~p  266 (296)
                      .+++.||+++.+.. ..+  +...  +++ +|  .++.||.||+|+|.+|+..
T Consensus       235 ~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG--~~i~aD~Vv~a~G~~pn~~  285 (493)
T 1m6i_A          235 KVRREGVKVMPNAIVQSVGVSSGKLLIKLKDG--RKVETDHIVAAVGLEPNVE  285 (493)
T ss_dssp             HHHTTTCEEECSCCEEEEEEETTEEEEEETTS--CEEEESEEEECCCEEECCT
T ss_pred             HHHhcCCEEEeCCEEEEEEecCCeEEEEECCC--CEEECCEEEECCCCCccHH
Confidence            66778999987743 222  2333  333 55  5799999999999987653

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.30  E-value=4.6e-07  Score=80.70  Aligned_cols=39  Identities=33%  Similarity=0.606  Sum_probs=34.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      +||+|||||++|+.+|.+|++.|++|+|+|  +.+      .+||.|
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E--~~~------~~GG~~   40 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLVIE--KRN------HIGGNA   40 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEEC--SSS------SSSGGG
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEe--cCC------CCCcce
Confidence            699999999999999999999999999999  666      566654

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=98.27  E-value=6e-07  Score=82.49  Aligned_cols=41  Identities=27%  Similarity=0.568  Sum_probs=34.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      ..+||+|||||++|++||+.|+++|++|+|+|  +.+      .+||.+
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E--~~~------~~GGr~   55 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLE--SSA------RLGGAV   55 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTTTCCEEEEC--SSS------SSBTTC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEE--cCC------CCCcee
Confidence            45699999999999999999999999999999  666      566643

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.26  E-value=7.2e-07  Score=82.32  Aligned_cols=35  Identities=26%  Similarity=0.458  Sum_probs=32.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      ..+||+|||||++|++||++|+++|++|+|+|  +.+
T Consensus        10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E--~~~   44 (489)
T 2jae_A           10 GSHSVVVLGGGPAGLCSAFELQKAGYKVTVLE--ART   44 (489)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEEC--SSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEe--ccC
Confidence            45699999999999999999999999999999  666

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=98.26  E-value=6.8e-07  Score=82.58  Aligned_cols=34  Identities=29%  Similarity=0.560  Sum_probs=32.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      .+||+|||||++|++||++|++.|++|+|+|  +.+
T Consensus        39 ~~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E--~~~   72 (495)
T 2vvm_A           39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLE--ARD   72 (495)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHTTCCEEEEC--SSS
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEEe--CCC
Confidence            4799999999999999999999999999999  667

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=98.25  E-value=4e-07  Score=83.26  Aligned_cols=34  Identities=24%  Similarity=0.376  Sum_probs=31.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC------CcEEEEeccCCC
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMN------KKVALFDFVTPS  150 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G------~~V~iiE~~~~~  150 (296)
                      .+||+|||||++|++||++|+++|      ++|+|+|  +.+
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlE--a~~   44 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVE--ASP   44 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEEC--SSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEE--CCC
Confidence            469999999999999999999999      9999999  666

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.22  E-value=6.1e-06  Score=72.24  Aligned_cols=68  Identities=16%  Similarity=0.152  Sum_probs=43.2

Q ss_pred             cceeeeeeeccc--cCCccchhhhccC--cce--eeccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665          76 HTPYLVLAKARF--LLPTLECQEVYHD--GRF--YDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus        76 ~~p~~v~~~~~~--~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..|.+|+++|.  .+..+..++....  ...  .+... .......+|+|||+|.+|+++|..|++.| +|+++.
T Consensus       119 ~~~d~vV~AtG~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~  192 (357)
T 4a9w_A          119 WLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYST-PAPFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWIT  192 (357)
T ss_dssp             EEEEEEEECCCSGGGBCCCCCTTGGGCCSEEEEGGGCCC-SGGGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEEC
T ss_pred             EEeCEEEECCCCCCCCCCCCCCCccccCCcEEEeccCCC-hhhcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEE
Confidence            568899999994  3322333222211  011  11111 11113458999999999999999999998 699998

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.19  E-value=1.1e-06  Score=81.27  Aligned_cols=35  Identities=26%  Similarity=0.443  Sum_probs=32.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCC
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQ  151 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~  151 (296)
                      .+||+|||||++|+++|++|++.|++|+|+|  +.+.
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E--~~~~   47 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFE--AEGK   47 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEEC--SSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEE--eCCC
Confidence            4699999999999999999999999999999  7773

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=98.18  E-value=1.1e-06  Score=80.60  Aligned_cols=34  Identities=26%  Similarity=0.436  Sum_probs=31.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--CcEEEEeccCCC
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMN--KKVALFDFVTPS  150 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE~~~~~  150 (296)
                      .+||+|||||++|+++|++|++.|  ++|+|+|  +.+
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E--~~~   39 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLE--AGE   39 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEEC--SSS
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEE--CCC
Confidence            469999999999999999999999  9999999  666

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=98.17  E-value=1.4e-06  Score=78.07  Aligned_cols=33  Identities=18%  Similarity=0.398  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      +||+|||||++|+.+|..|++.|++|+|+|  +.+
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E--~~~   36 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAEKGHQVHIID--QRD   36 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEE--SSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEE--ecC
Confidence            699999999999999999999999999999  666

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.15  E-value=1.8e-06  Score=79.19  Aligned_cols=41  Identities=22%  Similarity=0.348  Sum_probs=36.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      ..+||+|||+|++|+.+|..|++.|++|+++|  +.+      .+||.+
T Consensus        19 ~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e--~~~------~~Gg~~   59 (475)
T 3p1w_A           19 EHYDVIILGTGLKECILSGLLSHYGKKILVLD--RNP------YYGGET   59 (475)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEC--SSS------SSCGGG
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEe--ccC------CCCCCc
Confidence            46899999999999999999999999999999  677      677755

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.15  E-value=2e-06  Score=78.31  Aligned_cols=41  Identities=27%  Similarity=0.325  Sum_probs=35.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      ..+||+|||||++|+.+|..|++.|++|+++|  +.+      .+||.|
T Consensus         5 ~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e--~~~------~~gg~~   45 (433)
T 1d5t_A            5 EEYDVIVLGTGLTECILSGIMSVNGKKVLHMD--RNP------YYGGES   45 (433)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEEC--SSS------SSCTTS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEe--cCC------Cccccc
Confidence            45799999999999999999999999999999  666      556654

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=98.14  E-value=2e-06  Score=79.43  Aligned_cols=35  Identities=23%  Similarity=0.457  Sum_probs=32.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-CcEEEEeccCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMN-KKVALFDFVTPS  150 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE~~~~~  150 (296)
                      ..+||+|||||++|+++|++|+++| .+|+|+|  +.+
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E--~~~   43 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYE--CND   43 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEE--SSS
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEe--CCC
Confidence            3569999999999999999999998 7999999  666

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.14  E-value=2.9e-06  Score=75.09  Aligned_cols=33  Identities=24%  Similarity=0.253  Sum_probs=30.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ..+||+|||||.+|+++|++|+++|.+|+|+|+
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~   37 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILARKGYSVHILAR   37 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCEEEEEec
Confidence            357999999999999999999999999999993

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.11  E-value=1.9e-06  Score=79.72  Aligned_cols=35  Identities=23%  Similarity=0.425  Sum_probs=32.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      ..+||+|||||++|+++|+.|++.|++|+|+|  +.+
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE--~~~   66 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLE--ASE   66 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEEC--SSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEE--CCC
Confidence            35699999999999999999999999999999  666

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.09  E-value=2e-06  Score=78.17  Aligned_cols=33  Identities=12%  Similarity=0.280  Sum_probs=30.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      +.+||+||||||+|+++|+.|++.|++|+|+|+
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~   53 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTD   53 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcC
Confidence            557999999999999999999999999999994

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.02  E-value=3.2e-06  Score=74.46  Aligned_cols=44  Identities=20%  Similarity=0.157  Sum_probs=34.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC------CcEEEEeccCCC-CCCcccccCCee
Q psy7665         117 DLCVIGGGSGGISAAKEAASMN------KKVALFDFVTPS-QHGTVWGLGGTC  162 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G------~~V~iiE~~~~~-~~g~~~~~GG~~  162 (296)
                      ||+|||||.+|+++|++|+++|      .+|+|+|  +.. ..+.+...||.+
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE--~~~~~~~aS~~~~g~~   52 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYA--DRFTPLTTTDVAAGLW   52 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEE--SSCGGGSGGGTCCCBC
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEE--CCCCCCCccccCccee
Confidence            8999999999999999999998      9999999  333 234444445544

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=98.00  E-value=4.7e-06  Score=76.57  Aligned_cols=34  Identities=26%  Similarity=0.445  Sum_probs=31.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEeccCCC
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFDFVTPS  150 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE~~~~~  150 (296)
                      .+||+|||||++|+.+|++|++.|. +|+|+|  +.+
T Consensus         4 ~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e--~~~   38 (472)
T 1b37_A            4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILE--ATD   38 (472)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHHTTCCCEEEEC--SSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCceEEEe--CCC
Confidence            4699999999999999999999998 899999  666

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=97.98  E-value=5.5e-06  Score=78.80  Aligned_cols=35  Identities=34%  Similarity=0.588  Sum_probs=31.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      ..+||+|||||++|+.+|++|++.|++|+|+|  +.+
T Consensus        45 ~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE--~~~   79 (623)
T 3pl8_A           45 IKYDVVIVGSGPIGCTYARELVGAGYKVAMFD--IGE   79 (623)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTCEEEEEC--SSC
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhCCCcEEEEe--ccC
Confidence            45899999999999999999999999999999  555

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.98  E-value=1.9e-05  Score=72.31  Aligned_cols=32  Identities=19%  Similarity=0.327  Sum_probs=29.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+.+|+|||||..|+.+|..+.+.|. +|++++
T Consensus       263 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~  295 (456)
T 2vdc_G          263 AGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLY  295 (456)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCCEEEEEE
Confidence            45689999999999999999999997 599999

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.97  E-value=4.4e-06  Score=74.54  Aligned_cols=29  Identities=21%  Similarity=0.386  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHHHhC--CCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASM--NKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE  145 (296)
                      ||+|||||++|+++|..|++.  |.+|+|+|
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E   32 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVE   32 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCEEEEE
Confidence            899999999999999999999  99999999

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.96  E-value=0.00013  Score=66.83  Aligned_cols=70  Identities=9%  Similarity=-0.071  Sum_probs=45.0

Q ss_pred             cceeeeeeeccccC-Cccchhhhcc--Ccceeecc---c-------cCCCCccccEEEECCChHHHHHHHHHH-------
Q psy7665          76 HTPYLVLAKARFLL-PTLECQEVYH--DGRFYDYL---D-------NNFQTYDYDLCVIGGGSGGISAAKEAA-------  135 (296)
Q Consensus        76 ~~p~~v~~~~~~~~-~~~~~~~~~~--~~~~~~~~---~-------~~~~~~~~dVvVIGgG~aG~~aA~~l~-------  135 (296)
                      ..+|.+|+|+|+.+ ..+++++...  .....+.+   .       ........+|+|||+|.+|+++|..|+       
T Consensus        93 ~~~d~lVlAtGs~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~  172 (460)
T 1cjc_A           93 DAYHAVVLSYGAEDHQALDIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLE  172 (460)
T ss_dssp             HHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGT
T ss_pred             EEcCEEEEecCcCCCCCCCCCCCCCCcEEEHHHHHHHhhcCccccccccCCCCCEEEEECCCHHHHHHHHHHhhchhhhc
Confidence            57899999999874 2233333221  11111111   0       000112458999999999999999999       


Q ss_pred             -------------hCCC-cEEEEe
Q psy7665         136 -------------SMNK-KVALFD  145 (296)
Q Consensus       136 -------------~~G~-~V~iiE  145 (296)
                                   +.|. +|+|++
T Consensus       173 ~tdi~~~a~~~l~~~g~~~V~lv~  196 (460)
T 1cjc_A          173 KTDITEAALGALRQSRVKTVWIVG  196 (460)
T ss_dssp             TSCCCHHHHHHHHTCCCCEEEEEC
T ss_pred             cccccHHHHHHHhhCCCcEEEEEE
Confidence                         5686 799999

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.96  E-value=3.2e-05  Score=77.67  Aligned_cols=30  Identities=23%  Similarity=0.273  Sum_probs=28.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+|+|||||..|+++|..+++.|. +|++++
T Consensus       333 ~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~  363 (1025)
T 1gte_A          333 GAVIVLGAGDTAFDCATSALRCGARRVFLVF  363 (1025)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             CcEEEECCChHHHHHHHHHHHcCCCEEEEEE
Confidence            389999999999999999999996 899999

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.96  E-value=6.2e-06  Score=79.07  Aligned_cols=35  Identities=26%  Similarity=0.474  Sum_probs=32.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      ..+||+|||||++|+++|.+|++.|++|+|+|  +.+
T Consensus       106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e--~~~  140 (662)
T 2z3y_A          106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLE--ARD  140 (662)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEEC--SSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEe--cCC
Confidence            45799999999999999999999999999999  666

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.93  E-value=0.00016  Score=66.04  Aligned_cols=70  Identities=13%  Similarity=0.029  Sum_probs=44.2

Q ss_pred             cceeeeeeecccc-CCccchhhhccC--cceeecc----------ccCCCCccccEEEECCChHHHHHHHHHHhC-----
Q psy7665          76 HTPYLVLAKARFL-LPTLECQEVYHD--GRFYDYL----------DNNFQTYDYDLCVIGGGSGGISAAKEAASM-----  137 (296)
Q Consensus        76 ~~p~~v~~~~~~~-~~~~~~~~~~~~--~~~~~~~----------~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~-----  137 (296)
                      ..+|.+|+|+|+. +..+++++....  ....+.+          .........+|+|||+|.+|+++|..|++.     
T Consensus        95 ~~~d~lViAtG~~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~  174 (456)
T 1lqt_A           95 ERYDAVIYAVGAQSDRMLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLA  174 (456)
T ss_dssp             HHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHT
T ss_pred             EeCCEEEEeeCCCCCCCCCCCCCCCCCcEEHHHHHhhhhcCcccccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhhhc
Confidence            5789999999985 333333332211  1111110          000011245899999999999999999874     


Q ss_pred             ---------------C-CcEEEEe
Q psy7665         138 ---------------N-KKVALFD  145 (296)
Q Consensus       138 ---------------G-~~V~iiE  145 (296)
                                     | .+|+|++
T Consensus       175 ~tdi~~~~~~~l~~~g~~~V~lv~  198 (456)
T 1lqt_A          175 RTDIADHALESLRPRGIQEVVIVG  198 (456)
T ss_dssp             TSCCCHHHHHHHTTCCCCEEEEEC
T ss_pred             CCCccHHHHHHHHHCCCcEEEEEe
Confidence                           5 4899999

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.89  E-value=9.7e-06  Score=79.50  Aligned_cols=38  Identities=26%  Similarity=0.490  Sum_probs=33.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHG  153 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g  153 (296)
                      ..+||+|||||++|+++|++|+++|++|+|+|  +.+++|
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E--~~~~~G  314 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLE--ARDRVG  314 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEC--SSSSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEE--ecCcCC
Confidence            45799999999999999999999999999999  666433

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=97.89  E-value=5.1e-05  Score=65.32  Aligned_cols=70  Identities=11%  Similarity=0.041  Sum_probs=43.8

Q ss_pred             ccceeeeeeeccccCCccchhhhcc--Ccceeec--cccCCCCccccEEEECCCh-HHHHHHHHHHhCCCcEEEEe
Q psy7665          75 LHTPYLVLAKARFLLPTLECQEVYH--DGRFYDY--LDNNFQTYDYDLCVIGGGS-GGISAAKEAASMNKKVALFD  145 (296)
Q Consensus        75 ~~~p~~v~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~dVvVIGgG~-aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+..|.+|+|+|+.+..++.++...  .......  .... ...+.+++|||||. +++++|..+++.|.+|++++
T Consensus       103 ~~~a~~liiATGs~p~~p~i~G~~~~~~~~v~~~~~~~~~-~~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~  177 (304)
T 4fk1_A          103 KYLAERVLLATGMQEEFPSIPNVREYYGKSLFSCPYCDGW-ELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIAT  177 (304)
T ss_dssp             EEEEEEEEECCCCEEECCSCTTHHHHBTTTEESCHHHHSG-GGTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEEC
T ss_pred             EEEeCEEEEccCCccccccccCccccccceeeeccccchh-HhcCCceeeecCCCchhhhHHHHHHhCCceEEEEe
Confidence            4567889999998665555444321  1111111  0111 11234688888886 56789999999999999998

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=97.87  E-value=1.6e-05  Score=77.36  Aligned_cols=37  Identities=22%  Similarity=0.477  Sum_probs=33.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQH  152 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~  152 (296)
                      ..+||+|||||++|+++|..|++.|++|+|+|  +.+..
T Consensus       335 ~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E--~~~~~  371 (776)
T 4gut_A          335 HNKSVIIIGAGPAGLAAARQLHNFGIKVTVLE--AKDRI  371 (776)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCEEEEEC--SSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEe--cccce
Confidence            45799999999999999999999999999999  65633

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.76  E-value=0.00012  Score=66.56  Aligned_cols=47  Identities=15%  Similarity=0.201  Sum_probs=31.9

Q ss_pred             HHHHHHHCCcEEEcceE-EEEeCCEEEE-c----ce---eEEEEeCeEEEcCCCCC
Q psy7665         217 YEKELEKNKIDYFNAKA-VFVDKHRVKF-A----GE---ERTVSAQNFIIAVGGRP  263 (296)
Q Consensus       217 ~~~~~~~~~v~~~~~~~-~~~~~~~v~v-~----g~---~~~~~a~~vV~AtG~~p  263 (296)
                      +...+++.||+++.+.. ..++...+.+ +    ++   ..++.+|.+++|+|..+
T Consensus       214 ~~~~l~~~gI~~~~~~~v~~v~~~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~  269 (437)
T 3sx6_A          214 LTKGLKEEGIEAYTNCKVTKVEDNKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKG  269 (437)
T ss_dssp             HHHHHHHTTCEEECSEEEEEEETTEEEEEEECTTSCEEEEEEEECSEEEEECCEEC
T ss_pred             HHHHHHHCCCEEEcCCEEEEEECCeEEEEecccCCccccceEEEEeEEEEcCCCcC
Confidence            34556778999988754 3345555554 2    21   36789999999999654

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.74  E-value=1.6e-05  Score=73.90  Aligned_cols=34  Identities=26%  Similarity=0.449  Sum_probs=30.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHh-CCCcEEEEecc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAAS-MNKKVALFDFV  147 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~-~G~~V~iiE~~  147 (296)
                      ..||+||||||++||.+|.+|++ .|++|+|+|++
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG   50 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAG   50 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSS
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCC
Confidence            47999999999999999999998 67899999944

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=97.73  E-value=0.0033  Score=58.65  Aligned_cols=71  Identities=14%  Similarity=0.200  Sum_probs=45.6

Q ss_pred             ccceeeeeeeccc--cCCccchhhhcc-Ccc-e--eeccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665          75 LHTPYLVLAKARF--LLPTLECQEVYH-DGR-F--YDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus        75 ~~~p~~v~~~~~~--~~~~~~~~~~~~-~~~-~--~~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+..+.+|+++|.  .+..+..++.+. ... +  ...........+..|+|||+|.+|+..|..+++.|.+|++++
T Consensus       140 ~~~ad~vV~AtG~~s~p~~p~i~G~~~f~G~~~hs~~~~~~~~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~  216 (542)
T 1w4x_A          140 RIRARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQ  216 (542)
T ss_dssp             EEEEEEEEECCCSCCCCCCCCCTTGGGCCSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEE
T ss_pred             EEEeCEEEECcCCCCCCCCCCCCCcccCCCceEECCCCCCchhccCCCEEEEECCCccHHHHHHHHhhcCceEEEEE
Confidence            3568899999994  332333333221 010 1  011101111235689999999999999999999999999999

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.70  E-value=2.5e-05  Score=73.10  Aligned_cols=34  Identities=38%  Similarity=0.597  Sum_probs=31.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEecc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFV  147 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~  147 (296)
                      ..||+||||+|++|+.+|.+|++.|.+|+|+|++
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g   39 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERG   39 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            5689999999999999999999999999999943

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.69  E-value=0.0001  Score=66.25  Aligned_cols=46  Identities=13%  Similarity=0.041  Sum_probs=33.5

Q ss_pred             HHHHHHHCCcEEEcce-EEEEeCCEEEE-cceeEEEEeCeEEEcCCCCCC
Q psy7665         217 YEKELEKNKIDYFNAK-AVFVDKHRVKF-AGEERTVSAQNFIIAVGGRPT  264 (296)
Q Consensus       217 ~~~~~~~~~v~~~~~~-~~~~~~~~v~v-~g~~~~~~a~~vV~AtG~~p~  264 (296)
                      +...+++.||+++.+. ...++...+.+ +|  .++.+|.||+|+|..|.
T Consensus       224 ~~~~l~~~gV~~~~~~~v~~i~~~~v~~~~g--~~~~~D~vi~a~G~~~~  271 (409)
T 3h8l_A          224 VASIYNQLGIKLVHNFKIKEIREHEIVDEKG--NTIPADITILLPPYTGN  271 (409)
T ss_dssp             HHHHHHHHTCEEECSCCEEEECSSEEEETTS--CEEECSEEEEECCEECC
T ss_pred             HHHHHHHCCCEEEcCCceEEECCCeEEECCC--CEEeeeEEEECCCCCcc
Confidence            3455667799998764 34455666777 56  57999999999997664

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.62  E-value=2.8e-05  Score=72.66  Aligned_cols=32  Identities=28%  Similarity=0.532  Sum_probs=30.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ..||+||||||.+||.+|.+|++ |.+|+|+|+
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEa   56 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE-KYKVLVLER   56 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT-TSCEEEECS
T ss_pred             CcccEEEECccHHHHHHHHHHhc-CCcEEEEec
Confidence            56899999999999999999999 999999994

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=97.57  E-value=4.2e-05  Score=71.95  Aligned_cols=34  Identities=24%  Similarity=0.435  Sum_probs=31.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-CcEEEEecc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMN-KKVALFDFV  147 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE~~  147 (296)
                      ..||+||||||.|||.+|.+|++.| .+|+|+|++
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG   39 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAG   39 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecC
Confidence            5689999999999999999999998 699999943

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=97.48  E-value=6.9e-05  Score=70.53  Aligned_cols=34  Identities=24%  Similarity=0.338  Sum_probs=30.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC-CCcEEEEecc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASM-NKKVALFDFV  147 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~-G~~V~iiE~~  147 (296)
                      ..||+||||||.|||.+|.+|++. +.+|+|+|++
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG   52 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESG   52 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSS
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecC
Confidence            569999999999999999999975 7999999944

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.41  E-value=0.00014  Score=68.86  Aligned_cols=41  Identities=29%  Similarity=0.384  Sum_probs=38.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      +.|||+|||+|..|+..|..|++.|++|+++|  +++      ..||.|
T Consensus         7 ~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id--~~~------~~gg~~   47 (650)
T 1vg0_A            7 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVD--SRS------YYGGNW   47 (650)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEEC--SSS------SSCGGG
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhCCCEEEEEc--CCC------cccCcc
Confidence            46999999999999999999999999999999  777      889976

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.39  E-value=0.00014  Score=67.28  Aligned_cols=34  Identities=18%  Similarity=0.183  Sum_probs=31.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEecc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFV  147 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~  147 (296)
                      ..+|++|||+|++|+.+|.+|++.|.+|+|+|++
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~   37 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMG   37 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCC
Confidence            4689999999999999999999999999999943

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=97.36  E-value=8e-05  Score=69.88  Aligned_cols=33  Identities=24%  Similarity=0.428  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHHHh-CCCcEEEEecc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAAS-MNKKVALFDFV  147 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~-~G~~V~iiE~~  147 (296)
                      .||+||||||.+||.+|.+|++ .|.+|+|+|++
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG   35 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAG   35 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSS
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecC
Confidence            4899999999999999999998 78999999943

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.31  E-value=0.00017  Score=66.77  Aligned_cols=34  Identities=24%  Similarity=0.260  Sum_probs=31.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEecc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFV  147 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~  147 (296)
                      ..+|++|||+|++|+.+|.+|++.|.+|+|+|++
T Consensus        10 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~   43 (507)
T 1coy_A           10 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG   43 (507)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECC
Confidence            5689999999999999999999999999999943

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=97.30  E-value=0.00073  Score=62.48  Aligned_cols=69  Identities=12%  Similarity=0.078  Sum_probs=43.1

Q ss_pred             cceeeeeeeccccCCccchhhh-----ccCcceee--ccccCCCCccccEEEECCChHHHHHHHHHHhC--CCcEEEEe
Q psy7665          76 HTPYLVLAKARFLLPTLECQEV-----YHDGRFYD--YLDNNFQTYDYDLCVIGGGSGGISAAKEAASM--NKKVALFD  145 (296)
Q Consensus        76 ~~p~~v~~~~~~~~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE  145 (296)
                      +....+++++|..|..+.....     +...+...  .+... ...+.+|+|||+|.+|+..+..|++.  +.+|+++-
T Consensus       201 ~~ar~vVlatG~~P~iP~~~~~~g~v~Hss~y~~~~~~~~~~-~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~  278 (501)
T 4b63_A          201 RRTRKVVIAIGGTAKMPSGLPQDPRIIHSSKYCTTLPALLKD-KSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIM  278 (501)
T ss_dssp             EEEEEEEECCCCEECCCTTSCCCTTEEEGGGHHHHHHHHSCC-TTSCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEEC
T ss_pred             EEeCEEEECcCCCCCCCCCCCCCcceeeccccccchhhcccc-ccCCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEe
Confidence            4567788888865443332211     11111111  01111 23456899999999999999999875  67899998

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.25  E-value=0.00025  Score=66.96  Aligned_cols=34  Identities=26%  Similarity=0.419  Sum_probs=31.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHh-CCCcEEEEecc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAAS-MNKKVALFDFV  147 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~-~G~~V~iiE~~  147 (296)
                      ..||++|||+|++|+.+|.+|++ .|.+|+|+|++
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g   57 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKG   57 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESS
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecC
Confidence            56899999999999999999999 89999999943

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=97.18  E-value=0.00027  Score=66.11  Aligned_cols=34  Identities=32%  Similarity=0.493  Sum_probs=31.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC-CCcEEEEecc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASM-NKKVALFDFV  147 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~-G~~V~iiE~~  147 (296)
                      ..+|++|||+|++|+.+|.+|++. |.+|+|+|++
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g   46 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAG   46 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecC
Confidence            468999999999999999999998 8999999943

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.11  E-value=0.0002  Score=68.60  Aligned_cols=31  Identities=32%  Similarity=0.805  Sum_probs=29.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC--------CcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMN--------KKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G--------~~V~iiE  145 (296)
                      .++|+|||||++|++||++|++.|        ++|+|+|
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E   94 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYE   94 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEe
Confidence            468999999999999999999998        9999999

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.25  E-value=0.0051  Score=47.17  Aligned_cols=31  Identities=26%  Similarity=0.291  Sum_probs=29.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ...|+|+|+|..|...|..|.+.|.+|++++
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid   49 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVD   49 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence            4489999999999999999999999999999

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.21  E-value=0.007  Score=45.53  Aligned_cols=31  Identities=10%  Similarity=0.134  Sum_probs=29.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..+|+|+|+|..|...|..|.+.|++|+++|
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid   37 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIE   37 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEE
Confidence            3479999999999999999999999999999

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.15  E-value=0.0063  Score=52.90  Aligned_cols=30  Identities=23%  Similarity=0.163  Sum_probs=27.9

Q ss_pred             ccEEEECCChHHHH-HHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGIS-AAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~-aA~~l~~~G~~V~iiE  145 (296)
                      .+|.|||.|.+|++ +|..|.++|++|++.|
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D   35 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCD   35 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCCEEEEEc
Confidence            37999999999996 7889999999999999

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.97  E-value=0.0078  Score=44.75  Aligned_cols=30  Identities=23%  Similarity=0.349  Sum_probs=28.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|+|+|+|..|...|..|.+.|++|+++|
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d   34 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLID   34 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence            479999999999999999999999999999

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=95.90  E-value=0.0094  Score=44.70  Aligned_cols=30  Identities=33%  Similarity=0.582  Sum_probs=28.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..|+|+|+|..|...|..|.+.|++|+++|
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id   36 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVD   36 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEE
Confidence            379999999999999999999999999999

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.84  E-value=0.011  Score=45.05  Aligned_cols=30  Identities=13%  Similarity=0.135  Sum_probs=28.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|+|+|+|..|...|..|.+.|++|+++|
T Consensus         4 ~~vlI~G~G~vG~~la~~L~~~g~~V~vid   33 (153)
T 1id1_A            4 DHFIVCGHSILAINTILQLNQRGQNVTVIS   33 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEE
Confidence            379999999999999999999999999999

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=95.64  E-value=0.014  Score=41.91  Aligned_cols=31  Identities=26%  Similarity=0.468  Sum_probs=28.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-CcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMN-KKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE  145 (296)
                      ..+|+|+|+|..|...+..|.+.| ++|++++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~   36 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVAD   36 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEE
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEe
Confidence            347999999999999999999999 8999999

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=95.53  E-value=0.094  Score=47.12  Aligned_cols=48  Identities=17%  Similarity=0.247  Sum_probs=35.2

Q ss_pred             HHHHHHHCCcEEEcceE-EEEeCCEEEE---cceeEEEEeCeEEEcCCCCCC
Q psy7665         217 YEKELEKNKIDYFNAKA-VFVDKHRVKF---AGEERTVSAQNFIIAVGGRPT  264 (296)
Q Consensus       217 ~~~~~~~~~v~~~~~~~-~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~  264 (296)
                      +...+++.||+++.+.. ..++...+.+   ++...++.+|.+|+|+|.+|.
T Consensus       206 l~~~l~~~GV~~~~~~~v~~v~~~~~~~~~~~g~~~~i~~d~vi~~~G~~~~  257 (430)
T 3hyw_A          206 VEDLFAERNIDWIANVAVKAIEPDKVIYEDLNGNTHEVPAKFTMFMPSFQGP  257 (430)
T ss_dssp             HHHHHHHTTCEEECSCEEEEECSSEEEEECTTSCEEEEECSEEEEECEEECC
T ss_pred             HHHHHHhCCeEEEeCceEEEEeCCceEEEeeCCCceEeecceEEEeccCCCc
Confidence            44556788999988755 3356666665   455578999999999997653

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.32  E-value=0.016  Score=47.32  Aligned_cols=32  Identities=16%  Similarity=0.216  Sum_probs=29.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+..|+|||||.+|...+..|.+.|.+|+|++
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVva   61 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVA   61 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCCCEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEC
Confidence            34589999999999999999999999999998

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=95.30  E-value=0.023  Score=52.22  Aligned_cols=55  Identities=11%  Similarity=0.000  Sum_probs=30.9

Q ss_pred             ccceeeeeeeccccCCccchhhhccCc--ce---eeccccCCCCccccEEEECCChHHHH
Q psy7665          75 LHTPYLVLAKARFLLPTLECQEVYHDG--RF---YDYLDNNFQTYDYDLCVIGGGSGGIS  129 (296)
Q Consensus        75 ~~~p~~v~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~dVvVIGgG~aG~~  129 (296)
                      .+.+|.+++++|+.+..++.+......  ..   ..+..........+++|||+|+.|++
T Consensus       205 ~~~~d~lvlAtGa~~~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~vvViGgG~~gle  264 (493)
T 1y56_A          205 EILAKRVVLATGAIDSTMLFENNDMPGVFRRDFALEVMNVWEVAPGRKVAVTGSKADEVI  264 (493)
T ss_dssp             EEEESCEEECCCEEECCCCCTTTTSTTEEEHHHHHHHHHTSCBCSCSEEEEESTTHHHHH
T ss_pred             EEECCEEEECCCCCccCCCCCCCCCCCEEEcHHHHHHHHhcccCCCCEEEEECCCHHHHH
Confidence            567889999999766544433322111  11   11111100112358999999999987

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=95.24  E-value=0.018  Score=42.91  Aligned_cols=29  Identities=38%  Similarity=0.400  Sum_probs=28.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|+|+|+|..|...|..|.+.|.+|++++
T Consensus         8 ~v~I~G~G~iG~~~a~~l~~~g~~v~~~d   36 (144)
T 2hmt_A            8 QFAVIGLGRFGGSIVKELHRMGHEVLAVD   36 (144)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEE
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence            69999999999999999999999999999

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.15  E-value=0.019  Score=45.15  Aligned_cols=30  Identities=20%  Similarity=0.189  Sum_probs=28.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhC-CCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASM-NKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~-G~~V~iiE  145 (296)
                      .+|+|+|+|..|...|..|.+. |++|+++|
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid   70 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYGKISLGIE   70 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHCSCEEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhccCCeEEEEE
Confidence            4799999999999999999999 99999999

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=95.02  E-value=0.015  Score=49.05  Aligned_cols=31  Identities=26%  Similarity=0.431  Sum_probs=29.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..|+|||||.+|...+..|.+.|.+|+|++
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~~Ga~VtVia   43 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVS   43 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGGTCEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCEEEEEc
Confidence            3479999999999999999999999999999

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=94.82  E-value=0.018  Score=52.13  Aligned_cols=31  Identities=19%  Similarity=0.234  Sum_probs=29.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      .+|+|||.|.+|+++|..|+++|++|+++|.
T Consensus         6 ~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~   36 (439)
T 2x5o_A            6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDT   36 (439)
T ss_dssp             CCEEEECCHHHHHHHHHHHHTTTCCCEEEES
T ss_pred             CEEEEEeecHHHHHHHHHHHhCCCEEEEEEC
Confidence            3799999999999999999999999999993

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=94.78  E-value=0.027  Score=45.68  Aligned_cols=29  Identities=21%  Similarity=0.332  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|+|+|+|..|...|..|.+.|++|+++|
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid   30 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIIN   30 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence            69999999999999999999999999999

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=94.70  E-value=0.026  Score=51.23  Aligned_cols=31  Identities=26%  Similarity=0.314  Sum_probs=29.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +.+|.|||.|.+|+++|..|+++|++|++.|
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D   39 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKLGAIVTVND   39 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEe
Confidence            3589999999999999999999999999999

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=94.68  E-value=0.03  Score=48.31  Aligned_cols=29  Identities=38%  Similarity=0.413  Sum_probs=28.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||+|.-|..-|..++..|++|+++|
T Consensus         8 ~VaViGaG~MG~giA~~~a~~G~~V~l~D   36 (319)
T 3ado_A            8 DVLIVGSGLVGRSWAMLFASGGFRVKLYD   36 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEE
Confidence            79999999999999999999999999999

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=94.47  E-value=0.039  Score=49.18  Aligned_cols=30  Identities=27%  Similarity=0.430  Sum_probs=28.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|+|||+|.+|+.+|..+...|.+|+++|
T Consensus       191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D  220 (405)
T 4dio_A          191 AKIFVMGAGVAGLQAIATARRLGAVVSATD  220 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEc
Confidence            489999999999999999999999999999

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=94.41  E-value=0.04  Score=47.55  Aligned_cols=30  Identities=23%  Similarity=0.252  Sum_probs=28.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|+|||+|..|...|..|++.|++|++++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~   32 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVS   32 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEe
Confidence            379999999999999999999999999999

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=94.30  E-value=0.044  Score=47.10  Aligned_cols=30  Identities=13%  Similarity=0.267  Sum_probs=28.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|.|||+|..|...|..|++.|++|++++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~   32 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLL   32 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEE
Confidence            379999999999999999999999999999

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=93.80  E-value=0.045  Score=45.48  Aligned_cols=30  Identities=27%  Similarity=0.371  Sum_probs=28.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+|+|||+|..|..+|..|++.|. +++|+|
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD   62 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLD   62 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEEC
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEc
Confidence            489999999999999999999997 899999

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=93.80  E-value=0.057  Score=45.68  Aligned_cols=29  Identities=28%  Similarity=0.342  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||+|..|...|..+++.|++|+++|
T Consensus         6 kV~VIGaG~mG~~iA~~la~~G~~V~l~d   34 (283)
T 4e12_A            6 NVTVLGTGVLGSQIAFQTAFHGFAVTAYD   34 (283)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEe
Confidence            79999999999999999999999999999

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=93.77  E-value=0.054  Score=49.54  Aligned_cols=30  Identities=30%  Similarity=0.481  Sum_probs=29.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|.|||+|..|+..|..|++.|++|+++|
T Consensus         9 ~~I~VIG~G~vG~~lA~~la~~G~~V~~~d   38 (478)
T 2y0c_A            9 MNLTIIGSGSVGLVTGACLADIGHDVFCLD   38 (478)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             ceEEEECcCHHHHHHHHHHHhCCCEEEEEE
Confidence            489999999999999999999999999999

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=93.72  E-value=0.059  Score=46.00  Aligned_cols=29  Identities=41%  Similarity=0.568  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||+|..|...|..|++.|++|+++|
T Consensus        17 ~I~VIG~G~mG~~iA~~la~~G~~V~~~d   45 (302)
T 1f0y_A           17 HVTVIGGGLMGAGIAQVAAATGHTVVLVD   45 (302)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence            69999999999999999999999999999

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=93.59  E-value=0.092  Score=46.51  Aligned_cols=43  Identities=21%  Similarity=0.153  Sum_probs=28.3

Q ss_pred             HHHHHCCcEEEcceE---EEEe--CCEEEE-cceeEEEEeCeEEEcCCCCC
Q psy7665         219 KELEKNKIDYFNAKA---VFVD--KHRVKF-AGEERTVSAQNFIIAVGGRP  263 (296)
Q Consensus       219 ~~~~~~~v~~~~~~~---~~~~--~~~v~v-~g~~~~~~a~~vV~AtG~~p  263 (296)
                      ..+++.+++++.+..   ...+  ...+.. +|  +++.+|.|++|+|.+|
T Consensus       210 ~~l~~~gi~v~~~~~v~~v~~~~~~~~v~~~~g--~~i~~D~vi~~~g~~~  258 (401)
T 3vrd_B          210 FGTENALIEWHPGPDAAVVKTDTEAMTVETSFG--ETFKAAVINLIPPQRA  258 (401)
T ss_dssp             TTSTTCSEEEECTTTTCEEEEETTTTEEEETTS--CEEECSEEEECCCEEE
T ss_pred             HHHHhcCcEEEeCceEEEEEecccceEEEcCCC--cEEEeeEEEEecCcCC
Confidence            445677899876532   1122  234555 55  6799999999999765

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=93.58  E-value=0.054  Score=47.85  Aligned_cols=31  Identities=26%  Similarity=0.373  Sum_probs=29.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..+|+|||+|.+|..+|..+...|.+|+++|
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D  214 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRLGAKTTGYD  214 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHHTCEEEEEC
T ss_pred             CCEEEEECchHHHHHHHHHHHHCCCEEEEEe
Confidence            3489999999999999999999999999999

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=93.56  E-value=0.064  Score=48.43  Aligned_cols=31  Identities=29%  Similarity=0.328  Sum_probs=29.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..++.|||.|.+|+.+|..++++|++|+.+|
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~D   51 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYD   51 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEEC
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCcEEEEE
Confidence            3489999999999999999999999999999

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=93.53  E-value=0.079  Score=44.60  Aligned_cols=29  Identities=17%  Similarity=0.161  Sum_probs=28.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||+|..|...|..|++.|++|++++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~   30 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWL   30 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEE
Confidence            58999999999999999999999999999

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=93.50  E-value=0.067  Score=45.97  Aligned_cols=30  Identities=37%  Similarity=0.412  Sum_probs=28.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      .+|+|||+|..|...|..|++.|+  +|+++|
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d   39 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLED   39 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEe
Confidence            479999999999999999999998  999999

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=93.43  E-value=0.072  Score=45.66  Aligned_cols=29  Identities=28%  Similarity=0.325  Sum_probs=27.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      +|+|||+|..|...|..|+..|+  +|+++|
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D   32 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVD   32 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEe
Confidence            69999999999999999999998  999999

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=93.40  E-value=0.069  Score=48.44  Aligned_cols=30  Identities=30%  Similarity=0.422  Sum_probs=28.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|.|||+|..|+..|..|++.|++|+++|
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D   32 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCID   32 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEE
Confidence            379999999999999999999999999999

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=93.40  E-value=0.06  Score=45.80  Aligned_cols=30  Identities=23%  Similarity=0.335  Sum_probs=28.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|+|||+|..|...|..|++.|++|++++
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~   32 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIG   32 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEE
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEE
Confidence            379999999999999999999999999999

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=93.34  E-value=0.073  Score=47.52  Aligned_cols=31  Identities=35%  Similarity=0.521  Sum_probs=29.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..|+|||+|.+|+.++..+...|.+|+++|
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D  202 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFD  202 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEc
Confidence            3489999999999999999999999999999

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=93.31  E-value=0.078  Score=46.02  Aligned_cols=30  Identities=17%  Similarity=0.392  Sum_probs=28.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|.|||+|..|...|..|++.|++|++++
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~   33 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLA   33 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEE
Confidence            379999999999999999999999999999

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=93.29  E-value=0.098  Score=42.09  Aligned_cols=31  Identities=13%  Similarity=0.347  Sum_probs=28.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..+|.|||+|..|...|..|++.|++|++++
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~   49 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYG   49 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEc
Confidence            3479999999999999999999999999999

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=93.18  E-value=0.091  Score=46.59  Aligned_cols=31  Identities=26%  Similarity=0.308  Sum_probs=29.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +.+|+|+|+|.+|+.++..+...|.+|+++|
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d  202 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRLGAVVMATD  202 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence            4489999999999999999999999999999

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=93.13  E-value=0.068  Score=46.43  Aligned_cols=30  Identities=27%  Similarity=0.315  Sum_probs=28.5

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+|+|||+|..|...|..|++.|+ +|+++|
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D   40 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYD   40 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEE
Confidence            479999999999999999999998 999999

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=93.11  E-value=0.084  Score=45.49  Aligned_cols=30  Identities=20%  Similarity=0.320  Sum_probs=27.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEE
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALF  144 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~ii  144 (296)
                      ..+|.|||+|..|...|..|++.|++|+++
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~   48 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI   48 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence            347999999999999999999999999998

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=93.10  E-value=0.085  Score=45.73  Aligned_cols=30  Identities=27%  Similarity=0.392  Sum_probs=28.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+|+|||+|..|...|..+++.|+ +|+++|
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~D   45 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFD   45 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEE
Confidence            479999999999999999999998 999999

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=92.99  E-value=0.047  Score=49.73  Aligned_cols=30  Identities=20%  Similarity=0.436  Sum_probs=28.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|+|+|+|-.|...|..|.+.|++|+++|
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~~v~vId   33 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENNDITIVD   33 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTEEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEE
Confidence            379999999999999999999999999999

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=92.93  E-value=0.084  Score=46.64  Aligned_cols=32  Identities=31%  Similarity=0.546  Sum_probs=29.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+.+|+|+|||.+|+.+|..+...|. +|+++|
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D  219 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVD  219 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEE
Confidence            45689999999999999999999998 999999

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=92.84  E-value=0.098  Score=45.22  Aligned_cols=30  Identities=30%  Similarity=0.371  Sum_probs=28.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+|+|||+|..|...|..++..|+ +|+++|
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~D   35 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFD   35 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEe
Confidence            379999999999999999999998 999999

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=92.79  E-value=0.05  Score=40.89  Aligned_cols=31  Identities=16%  Similarity=0.113  Sum_probs=28.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..|+|||+|..|...+..|.+.|.+|++++
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~   51 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAG   51 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            3479999999999999999999999999999

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=92.77  E-value=0.11  Score=44.99  Aligned_cols=30  Identities=33%  Similarity=0.406  Sum_probs=28.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+|.|||+|..|...|..|+..|+ +++++|
T Consensus         8 ~kI~viGaG~vG~~~a~~l~~~~~~~v~L~D   38 (324)
T 3gvi_A            8 NKIALIGSGMIGGTLAHLAGLKELGDVVLFD   38 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEe
Confidence            489999999999999999999998 999999

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=92.76  E-value=0.1  Score=44.45  Aligned_cols=29  Identities=21%  Similarity=0.315  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||+|..|...|..|++.|++|++++
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~   33 (316)
T 2ew2_A            5 KIAIAGAGAMGSRLGIMLHQGGNDVTLID   33 (316)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCcEEEEE
Confidence            79999999999999999999999999999

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=92.72  E-value=0.11  Score=44.67  Aligned_cols=30  Identities=27%  Similarity=0.398  Sum_probs=28.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+|+|||+|..|...|..++..|+ +|+++|
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~D   33 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLD   33 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEe
Confidence            379999999999999999999997 999999

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=92.71  E-value=0.1  Score=47.49  Aligned_cols=31  Identities=19%  Similarity=0.302  Sum_probs=29.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..|+|||||.+|...+..|.+.|.+|+|++
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~   42 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEAGARLTVNA   42 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEc
Confidence            3479999999999999999999999999999

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=92.68  E-value=0.1  Score=45.97  Aligned_cols=32  Identities=22%  Similarity=0.262  Sum_probs=29.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+.+|+|+|||.+|+.+|..|...|. +|+++|
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~D  223 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVD  223 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEE
Confidence            45689999999999999999999998 899999

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=92.65  E-value=0.11  Score=45.61  Aligned_cols=30  Identities=37%  Similarity=0.632  Sum_probs=28.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..|+|+|+|.+|..++..++..|.+|++++
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~d  197 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFD  197 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEe
Confidence            489999999999999999999999999999

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=92.64  E-value=0.11  Score=44.39  Aligned_cols=29  Identities=28%  Similarity=0.470  Sum_probs=27.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|+|||+|..|...|..|+ .|.+|++++
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~   31 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVT   31 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEE
Confidence            37999999999999999999 999999999

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=92.61  E-value=0.11  Score=47.42  Aligned_cols=30  Identities=37%  Similarity=0.278  Sum_probs=28.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhC-CC-cEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASM-NK-KVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~-G~-~V~iiE  145 (296)
                      .+|.|||+|..|+..|..|++. |+ +|+++|
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D   50 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQ   50 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEE
Confidence            3799999999999999999999 99 999999

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=92.54  E-value=0.13  Score=44.62  Aligned_cols=32  Identities=25%  Similarity=0.362  Sum_probs=29.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..+|.|||+|..|...|..|++.|++|++++
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~   44 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWA   44 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEe
Confidence            34589999999999999999999999999998

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=92.53  E-value=0.12  Score=45.28  Aligned_cols=29  Identities=34%  Similarity=0.581  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .|+|+|||..|.++++.+++.|++|+++|
T Consensus         3 ~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd   31 (363)
T 4ffl_A            3 TICLVGGKLQGFEAAYLSKKAGMKVVLVD   31 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence            69999999999999999999999999999

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=92.51  E-value=0.1  Score=47.14  Aligned_cols=29  Identities=21%  Similarity=0.213  Sum_probs=28.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||+|..|+..|..|++.|++|++++
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d   30 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVD   30 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence            58999999999999999999999999999

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=92.50  E-value=0.13  Score=44.57  Aligned_cols=31  Identities=26%  Similarity=0.324  Sum_probs=28.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      ..+|.|||+|..|...|..++..|.  +++++|
T Consensus        21 ~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~D   53 (330)
T 3ldh_A           21 YNKITVVGCDAVGMADAISVLMKDLADEVALVD   53 (330)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHHHCCCSEEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence            3589999999999999999999997  899999

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=92.38  E-value=0.13  Score=45.27  Aligned_cols=31  Identities=35%  Similarity=0.607  Sum_probs=29.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ...|+|+|+|..|..+|..++..|.+|++++
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d  196 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGMGAQVTILD  196 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEE
Confidence            3579999999999999999999999999999

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=92.22  E-value=0.13  Score=44.22  Aligned_cols=30  Identities=33%  Similarity=0.371  Sum_probs=28.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+|.|||+|..|...|..++..|+ +|+++|
T Consensus         9 ~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D   39 (315)
T 3tl2_A            9 KKVSVIGAGFTGATTAFLLAQKELADVVLVD   39 (315)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEe
Confidence            479999999999999999999999 999999

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=92.20  E-value=0.14  Score=45.28  Aligned_cols=31  Identities=39%  Similarity=0.621  Sum_probs=29.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..|+|||+|..|..+|..++..|.+|++++
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d  198 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGMGATVTVLD  198 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEe
Confidence            4589999999999999999999999999999

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=92.13  E-value=0.14  Score=44.14  Aligned_cols=30  Identities=33%  Similarity=0.407  Sum_probs=28.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      .+|+|||+|.+|...|..|+..|.  +++++|
T Consensus         8 ~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~D   39 (318)
T 1y6j_A            8 SKVAIIGAGFVGASAAFTMALRQTANELVLID   39 (318)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEe
Confidence            489999999999999999999987  899999

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=92.12  E-value=0.15  Score=45.63  Aligned_cols=29  Identities=21%  Similarity=0.228  Sum_probs=28.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|+|+|.|..|...|..|.+.|.+|+++|
T Consensus         6 ~viIiG~Gr~G~~va~~L~~~g~~vvvId   34 (413)
T 3l9w_A            6 RVIIAGFGRFGQITGRLLLSSGVKMVVLD   34 (413)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCCEEEEE
Confidence            79999999999999999999999999999

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=92.12  E-value=0.11  Score=44.69  Aligned_cols=30  Identities=37%  Similarity=0.419  Sum_probs=28.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+|.|||+|..|...|..|++.|+ +|+++|
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D   35 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFD   35 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEe
Confidence            379999999999999999999998 999999

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=92.07  E-value=0.15  Score=46.05  Aligned_cols=30  Identities=20%  Similarity=0.345  Sum_probs=29.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..+.|||.|..|+..|..|++.|++|++++
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D   38 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVD   38 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEe
Confidence            479999999999999999999999999999

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=91.98  E-value=0.13  Score=46.84  Aligned_cols=29  Identities=24%  Similarity=0.261  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||+|..|...|..+++.|++|+++|
T Consensus        39 kV~VIGaG~MG~~iA~~la~~G~~V~l~D   67 (463)
T 1zcj_A           39 SVGVLGLGTMGRGIAISFARVGISVVAVE   67 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEE
Confidence            79999999999999999999999999999

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=91.86  E-value=0.15  Score=44.38  Aligned_cols=30  Identities=30%  Similarity=0.361  Sum_probs=28.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|.|||+|..|...|..|++.|++|++++
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~   34 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWD   34 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEe
Confidence            379999999999999999999999999999

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=91.84  E-value=0.14  Score=43.56  Aligned_cols=32  Identities=25%  Similarity=0.424  Sum_probs=29.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      ....|+|||+|-.|+.+|.+|++.|. +++|+|
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD   67 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFD   67 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEEC
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEEC
Confidence            34589999999999999999999995 799999

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=91.81  E-value=0.2  Score=41.32  Aligned_cols=32  Identities=22%  Similarity=0.346  Sum_probs=29.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ...+|.|||+|..|...|..|++.|++|++++
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~   49 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADLGHEVTIGT   49 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence            34589999999999999999999999999999

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=91.81  E-value=0.16  Score=43.64  Aligned_cols=29  Identities=31%  Similarity=0.519  Sum_probs=27.2

Q ss_pred             cEEEECCChHHHHHHHHHHhC--CCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASM--NKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE  145 (296)
                      +|+|||+|..|...|..|++.  |.+|+++|
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D   32 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLD   32 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEe
Confidence            699999999999999999985  78999999

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=91.79  E-value=0.19  Score=43.52  Aligned_cols=32  Identities=25%  Similarity=0.357  Sum_probs=29.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      ...+|.|||+|..|...|+.++.+|.  +++++|
T Consensus        18 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~D   51 (331)
T 4aj2_A           18 PQNKITVVGVGAVGMACAISILMKDLADELALVD   51 (331)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEe
Confidence            34589999999999999999999987  899999

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=91.73  E-value=0.17  Score=43.95  Aligned_cols=31  Identities=16%  Similarity=0.372  Sum_probs=28.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      ..+|+|||+|-.|+.+|.+|+..|. +++|+|
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD   65 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVD   65 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEec
Confidence            3489999999999999999999996 689998

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=91.72  E-value=0.13  Score=43.96  Aligned_cols=30  Identities=27%  Similarity=0.532  Sum_probs=28.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      .+|.|||+|..|...|..++..|.  +++++|
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~D   46 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAKGIADRLVLLD   46 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEc
Confidence            489999999999999999999998  999999

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=91.68  E-value=0.17  Score=42.08  Aligned_cols=30  Identities=30%  Similarity=0.286  Sum_probs=28.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+|+|||+|-.|..+|..|++.|. +++|+|
T Consensus        29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD   59 (251)
T 1zud_1           29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLAD   59 (251)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCSEEEEEC
T ss_pred             CcEEEEccCHHHHHHHHHHHHcCCCeEEEEe
Confidence            489999999999999999999996 789998

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=91.65  E-value=0.18  Score=42.57  Aligned_cols=29  Identities=24%  Similarity=0.328  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||.|..|...|..|++.|++|++++
T Consensus         3 ~i~iIG~G~mG~~~a~~l~~~G~~V~~~d   31 (287)
T 3pef_A            3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWN   31 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCeEEEEc
Confidence            69999999999999999999999999999

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=91.62  E-value=0.16  Score=46.06  Aligned_cols=30  Identities=23%  Similarity=0.249  Sum_probs=29.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|.|||+|.-|...|..+++.|++|+++|
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D   84 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVV   84 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEE
Confidence            479999999999999999999999999999

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=91.54  E-value=0.22  Score=43.40  Aligned_cols=31  Identities=32%  Similarity=0.534  Sum_probs=28.1

Q ss_pred             cccEEEECC-ChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         115 DYDLCVIGG-GSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGg-G~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      ..+|+|||+ |.+|..+|+.+..+|.  +++++|
T Consensus         8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiD   41 (343)
T 3fi9_A            8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYD   41 (343)
T ss_dssp             SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEEC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEe
Confidence            348999998 9999999999999984  899999

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=91.51  E-value=0.25  Score=39.86  Aligned_cols=30  Identities=20%  Similarity=0.144  Sum_probs=28.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|.|||+|..|...|..|.+.|++|++++
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~g~~V~~~~   58 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGSGFKVVVGS   58 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEe
Confidence            479999999999999999999999999999

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=91.47  E-value=0.18  Score=42.95  Aligned_cols=30  Identities=33%  Similarity=0.376  Sum_probs=28.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..+|.|||+|.-|...|..++ .|++|+++|
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d   41 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQD   41 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEEC
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEE
Confidence            458999999999999999999 999999999

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=91.46  E-value=0.21  Score=41.83  Aligned_cols=31  Identities=16%  Similarity=0.266  Sum_probs=29.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..++|+|+|.+|..+|..|++.|.+|++++
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~  149 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSLDCAVTITN  149 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCEEEEEE
Confidence            3479999999999999999999999999998

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=91.45  E-value=0.18  Score=44.21  Aligned_cols=30  Identities=30%  Similarity=0.424  Sum_probs=28.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|.|||+|..|...|..|++.|++|++++
T Consensus        30 mkI~VIGaG~mG~alA~~La~~G~~V~l~~   59 (356)
T 3k96_A           30 HPIAILGAGSWGTALALVLARKGQKVRLWS   59 (356)
T ss_dssp             SCEEEECCSHHHHHHHHHHHTTTCCEEEEC
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEe
Confidence            479999999999999999999999999999

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=91.44  E-value=0.19  Score=43.07  Aligned_cols=30  Identities=17%  Similarity=0.242  Sum_probs=29.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|.|||.|..|...|..|++.|++|++++
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~~V~~~d   51 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWN   51 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEe
Confidence            479999999999999999999999999999

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=91.36  E-value=0.15  Score=43.99  Aligned_cols=29  Identities=14%  Similarity=0.321  Sum_probs=28.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||+|..|...|..|++.|++|++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~   30 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWG   30 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEE
Confidence            58999999999999999999999999999

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=91.34  E-value=0.19  Score=44.09  Aligned_cols=32  Identities=19%  Similarity=0.184  Sum_probs=29.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+..|+|+|.|..|..+|..|.+.|.+|++.|
T Consensus       172 ~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D  203 (364)
T 1leh_A          172 EGLAVSVQGLGNVAKALCKKLNTEGAKLVVTD  203 (364)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CcCEEEEECchHHHHHHHHHHHHCCCEEEEEc
Confidence            45689999999999999999999999999988

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=91.32  E-value=0.18  Score=42.79  Aligned_cols=30  Identities=27%  Similarity=0.353  Sum_probs=28.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|.|||.|..|...|..|++.|++|++++
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~G~~V~~~d   45 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEWPGGVTVYD   45 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTSTTCEEEEC
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEe
Confidence            479999999999999999999999999999

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=91.29  E-value=0.21  Score=42.54  Aligned_cols=30  Identities=23%  Similarity=0.306  Sum_probs=28.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|.|||.|..|...|..|++.|++|++++
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~d   37 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRAGLSTWGAD   37 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEE
Confidence            479999999999999999999999999999

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=91.28  E-value=0.16  Score=45.62  Aligned_cols=29  Identities=28%  Similarity=0.398  Sum_probs=27.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|.|||+|..|+..|..|++ |++|+++|
T Consensus        37 mkIaVIGlG~mG~~lA~~La~-G~~V~~~D   65 (432)
T 3pid_A           37 MKITISGTGYVGLSNGVLIAQ-NHEVVALD   65 (432)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT-TSEEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHc-CCeEEEEe
Confidence            489999999999999999998 99999999

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=91.26  E-value=0.19  Score=45.78  Aligned_cols=32  Identities=19%  Similarity=0.144  Sum_probs=29.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+..|+|+|+|..|..+|..|+..|.+|+++|
T Consensus       264 ~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D  295 (488)
T 3ond_A          264 AGKVAVVAGYGDVGKGCAAALKQAGARVIVTE  295 (488)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEc
Confidence            34589999999999999999999999999999

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=91.20  E-value=0.22  Score=42.98  Aligned_cols=30  Identities=30%  Similarity=0.386  Sum_probs=28.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+|.|||+|..|...|..|+..|. +++++|
T Consensus         6 ~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~D   36 (321)
T 3p7m_A            6 KKITLVGAGNIGGTLAHLALIKQLGDVVLFD   36 (321)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEe
Confidence            479999999999999999999988 999999

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=91.11  E-value=0.19  Score=43.46  Aligned_cols=30  Identities=23%  Similarity=0.285  Sum_probs=28.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      .+|.|||+|..|...|..|+..|.  +++++|
T Consensus         6 ~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D   37 (326)
T 3pqe_A            6 NKVALIGAGFVGSSYAFALINQGITDELVVID   37 (326)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEe
Confidence            479999999999999999999987  899999

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=91.10  E-value=0.17  Score=43.66  Aligned_cols=29  Identities=24%  Similarity=0.278  Sum_probs=27.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      +|.|||+|..|...|..|++.|+  +|+++|
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D   32 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLID   32 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEe
Confidence            68999999999999999999998  999999

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=91.06  E-value=0.19  Score=43.51  Aligned_cols=31  Identities=19%  Similarity=0.303  Sum_probs=28.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      ..+|+|||+|..|..+|..|+..|.  +++++|
T Consensus         9 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D   41 (326)
T 3vku_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVD   41 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEe
Confidence            3489999999999999999999887  899999

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=91.02  E-value=0.16  Score=45.29  Aligned_cols=28  Identities=25%  Similarity=0.398  Sum_probs=27.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||+|..|+..|..|++ |++|++++
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d   29 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVD   29 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEE
Confidence            58999999999999999999 99999999

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=90.98  E-value=0.27  Score=45.46  Aligned_cols=30  Identities=17%  Similarity=0.131  Sum_probs=27.4

Q ss_pred             ccEEEECCChHHHHH-HHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISA-AKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~a-A~~l~~~G~~V~iiE  145 (296)
                      .+|.+||.|-+|+++ |..|.++|++|++.|
T Consensus        20 ~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD   50 (524)
T 3hn7_A           20 MHIHILGICGTFMGSLALLARALGHTVTGSD   50 (524)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEEEecHhhHHHHHHHHHhCCCEEEEEC
Confidence            479999999999985 888899999999999

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=90.94  E-value=0.26  Score=39.34  Aligned_cols=29  Identities=17%  Similarity=0.319  Sum_probs=27.8

Q ss_pred             cEEEEC-CChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIG-GGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIG-gG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|+||| +|..|...|..|.+.|++|++++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~   31 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGS   31 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEE
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEe
Confidence            589999 99999999999999999999999

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=90.86  E-value=0.2  Score=45.07  Aligned_cols=31  Identities=26%  Similarity=0.208  Sum_probs=28.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +.+..|||.|..|+.+|..|++.|++|+++|
T Consensus        11 ~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D   41 (431)
T 3ojo_A           11 GSKLTVVGLGYIGLPTSIMFAKHGVDVLGVD   41 (431)
T ss_dssp             -CEEEEECCSTTHHHHHHHHHHTTCEEEEEC
T ss_pred             CCccEEEeeCHHHHHHHHHHHHCCCEEEEEE
Confidence            3478999999999999999999999999999

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=90.83  E-value=0.29  Score=41.08  Aligned_cols=32  Identities=16%  Similarity=0.226  Sum_probs=29.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      +..++|||+|-+|-.++..|++.|.+|+|+.+
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nR  149 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNR  149 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            45899999999999999999999999999983

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=90.81  E-value=0.2  Score=43.13  Aligned_cols=30  Identities=23%  Similarity=0.350  Sum_probs=27.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      .+|+|||+|.+|...|..|+..|.  ++.++|
T Consensus         7 ~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~D   38 (317)
T 3d0o_A            7 NKVVLIGNGAVGSSYAFSLVNQSIVDELVIID   38 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCSEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEe
Confidence            489999999999999999998884  799998

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=90.80  E-value=0.19  Score=42.39  Aligned_cols=29  Identities=17%  Similarity=0.189  Sum_probs=28.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||.|..|...|..|++.|++|++++
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~d   31 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWN   31 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEEC
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEc
Confidence            69999999999999999999999999999

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=90.78  E-value=0.19  Score=42.82  Aligned_cols=29  Identities=28%  Similarity=0.350  Sum_probs=27.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      +|+|||+|..|...|..|++.|.  +++++|
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D   32 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVD   32 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence            69999999999999999999998  899999

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=90.73  E-value=0.19  Score=43.08  Aligned_cols=29  Identities=21%  Similarity=0.349  Sum_probs=27.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--CcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMN--KKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE  145 (296)
                      +|+|||+|..|...|..|++.|  .+|+++|
T Consensus         3 kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d   33 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFID   33 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEc
Confidence            6999999999999999999999  7899999

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=90.60  E-value=0.17  Score=44.32  Aligned_cols=29  Identities=21%  Similarity=0.330  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||+|..|...|..|++.|++|++++
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~   45 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWH   45 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEE
Confidence            79999999999999999999999999999

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=90.56  E-value=0.17  Score=45.08  Aligned_cols=29  Identities=34%  Similarity=0.572  Sum_probs=27.4

Q ss_pred             cEEEECCChHHHHHHHHHHh-CCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAAS-MNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~-~G~~V~iiE  145 (296)
                      +|.|||+|..|...|..|++ .|++|++++
T Consensus         4 kI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            4 KVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            79999999999999999998 499999998

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=90.52  E-value=0.25  Score=44.22  Aligned_cols=32  Identities=19%  Similarity=0.172  Sum_probs=29.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+..|+|+|.|..|..+|..|+..|.+|+++|
T Consensus       219 ~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D  250 (435)
T 3gvp_A          219 GGKQVVVCGYGEVGKGCCAALKAMGSIVYVTE  250 (435)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEe
Confidence            45689999999999999999999999999999

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=90.52  E-value=0.24  Score=42.61  Aligned_cols=30  Identities=17%  Similarity=0.392  Sum_probs=28.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|.|||.|..|...|..|++.|++|++++
T Consensus        32 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~d   61 (320)
T 4dll_A           32 RKITFLGTGSMGLPMARRLCEAGYALQVWN   61 (320)
T ss_dssp             SEEEEECCTTTHHHHHHHHHHTTCEEEEEC
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCeEEEEc
Confidence            489999999999999999999999999999

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=90.47  E-value=0.21  Score=43.61  Aligned_cols=31  Identities=16%  Similarity=0.176  Sum_probs=28.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      ..+|+|||+|..|+++|..|++.|. +++|+|
T Consensus        36 ~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD   67 (346)
T 1y8q_A           36 ASRVLLVGLKGLGAEIAKNLILAGVKGLTMLD   67 (346)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEE
Confidence            3489999999999999999999997 799998

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=90.47  E-value=0.29  Score=41.55  Aligned_cols=32  Identities=28%  Similarity=0.375  Sum_probs=29.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+..|.|||+|..|..+|..|...|.+|++++
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d  185 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGA  185 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEE
Confidence            45589999999999999999999999999999

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=90.43  E-value=0.26  Score=45.11  Aligned_cols=29  Identities=41%  Similarity=0.605  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||+|..|...|..+++.|++|+++|
T Consensus         7 kVgVIGaG~MG~~IA~~la~aG~~V~l~D   35 (483)
T 3mog_A            7 TVAVIGSGTMGAGIAEVAASHGHQVLLYD   35 (483)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEE
Confidence            79999999999999999999999999999

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=90.35  E-value=0.29  Score=41.61  Aligned_cols=32  Identities=22%  Similarity=0.333  Sum_probs=29.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+..|.|||+|..|..+|..|...|.+|++++
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d  187 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGA  187 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCEEEEEE
Confidence            34589999999999999999999999999999

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=90.31  E-value=0.26  Score=45.15  Aligned_cols=32  Identities=16%  Similarity=0.210  Sum_probs=29.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+..|+|||.|..|..+|..++..|.+|+++|
T Consensus       273 ~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d  304 (494)
T 3ce6_A          273 GGKKVLICGYGDVGKGCAEAMKGQGARVSVTE  304 (494)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CcCEEEEEccCHHHHHHHHHHHHCCCEEEEEe
Confidence            34589999999999999999999999999999

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=90.16  E-value=0.39  Score=40.16  Aligned_cols=31  Identities=16%  Similarity=0.251  Sum_probs=29.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ..|+|.|+|..|...+..|.+.|++|+++.+
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r   34 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGHEVTGLRR   34 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            3799999999999999999999999999993

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=90.13  E-value=0.29  Score=42.09  Aligned_cols=31  Identities=26%  Similarity=0.363  Sum_probs=29.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-CcEEEEec
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMN-KKVALFDF  146 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE~  146 (296)
                      .+|.|||.|..|...|..|++.| ++|+++++
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr   56 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDL   56 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECG
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeC
Confidence            47999999999999999999999 99999993

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=90.08  E-value=0.32  Score=41.44  Aligned_cols=31  Identities=19%  Similarity=0.283  Sum_probs=28.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      +..++|||+|.+|..+|..|++.|. +|+|+.
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~n  172 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLSTAAERIDMAN  172 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCSEEEEEC
T ss_pred             CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEe
Confidence            4579999999999999999999997 899998

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=90.01  E-value=0.24  Score=42.58  Aligned_cols=29  Identities=31%  Similarity=0.491  Sum_probs=27.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      +|.|||+|..|...|..+++.|.  +++++|
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D   32 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVD   32 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEe
Confidence            69999999999999999999887  899999

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=89.94  E-value=0.26  Score=41.37  Aligned_cols=31  Identities=10%  Similarity=0.243  Sum_probs=29.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..++|+|+|.+|..+|..|++.|.+|+|+.
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~  149 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQAQQNIVLAN  149 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEE
Confidence            3479999999999999999999999999999

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=89.94  E-value=0.32  Score=43.08  Aligned_cols=31  Identities=19%  Similarity=0.299  Sum_probs=29.2

Q ss_pred             cccEEEECC-ChHHHHHHHHHHhCCC---cEEEEe
Q psy7665         115 DYDLCVIGG-GSGGISAAKEAASMNK---KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGg-G~aG~~aA~~l~~~G~---~V~iiE  145 (296)
                      ..+|+|||| |-+|..|+..+...|.   +|+++|
T Consensus       214 ~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D  248 (394)
T 2qrj_A          214 KPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWD  248 (394)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEEC
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEee
Confidence            358999999 9999999999999997   999999

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=89.92  E-value=0.37  Score=41.08  Aligned_cols=30  Identities=33%  Similarity=0.538  Sum_probs=28.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|.|||.|..|...|..|++.|++|++++
T Consensus        10 ~~IgiIG~G~mG~~~A~~l~~~G~~V~~~d   39 (306)
T 3l6d_A           10 FDVSVIGLGAMGTIMAQVLLKQGKRVAIWN   39 (306)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence            479999999999999999999999999999

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=89.87  E-value=0.39  Score=38.91  Aligned_cols=31  Identities=13%  Similarity=0.113  Sum_probs=29.0

Q ss_pred             cccEEEECC-ChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGG-GSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGg-G~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..|+|.|| |..|...+.+|.++|++|+++.
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~   52 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMV   52 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCeEEEECCCChHHHHHHHHHHhCCCeEEEEE
Confidence            457999998 9999999999999999999998

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=89.84  E-value=0.3  Score=40.77  Aligned_cols=30  Identities=13%  Similarity=0.040  Sum_probs=28.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|+|.|+|..|...+.+|.++|++|+++.
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~   35 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTS   35 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEE
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEE
Confidence            479999999999999999999999999998

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=89.83  E-value=0.29  Score=42.35  Aligned_cols=31  Identities=19%  Similarity=0.303  Sum_probs=28.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      ..+|+|||+|.+|...|..|+..+.  ++.++|
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~D   41 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVD   41 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEe
Confidence            3589999999999999999998886  799999

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=89.74  E-value=0.33  Score=42.91  Aligned_cols=31  Identities=35%  Similarity=0.494  Sum_probs=29.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..|+|||+|..|...+..+.+.|++|++++
T Consensus        14 ~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d   44 (389)
T 3q2o_A           14 GKTIGIIGGGQLGRMMALAAKEMGYKIAVLD   44 (389)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEe
Confidence            3489999999999999999999999999999

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=89.73  E-value=0.28  Score=42.05  Aligned_cols=29  Identities=17%  Similarity=0.281  Sum_probs=26.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      +|.|||+|..|...|..++..|+ +++++|
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~D   30 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIA   30 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEEC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEc
Confidence            48999999999999999998888 699999

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=89.68  E-value=0.35  Score=41.29  Aligned_cols=30  Identities=17%  Similarity=0.285  Sum_probs=28.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|.|||+|..|...|..|++.|++|++++
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~   60 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWN   60 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEe
Confidence            479999999999999999999999999999

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=89.67  E-value=0.33  Score=40.60  Aligned_cols=29  Identities=21%  Similarity=0.154  Sum_probs=27.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||+|..|...|..|.+.|++|++++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~   30 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVS   30 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEE
Confidence            58999999999999999999999999998

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=89.61  E-value=0.15  Score=41.57  Aligned_cols=29  Identities=10%  Similarity=0.169  Sum_probs=27.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..++|+|+|..|...|..|.+.|+ |+++|
T Consensus        10 ~~viI~G~G~~G~~la~~L~~~g~-v~vid   38 (234)
T 2aef_A           10 RHVVICGWSESTLECLRELRGSEV-FVLAE   38 (234)
T ss_dssp             CEEEEESCCHHHHHHHHHSTTSEE-EEEES
T ss_pred             CEEEEECCChHHHHHHHHHHhCCe-EEEEE
Confidence            379999999999999999999999 99999

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=89.60  E-value=0.3  Score=42.05  Aligned_cols=30  Identities=23%  Similarity=0.320  Sum_probs=27.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      .+|+|||+|.+|...|..|+..+.  ++.++|
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~D   37 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVD   37 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEe
Confidence            589999999999999999998886  799999

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=89.56  E-value=0.23  Score=45.40  Aligned_cols=30  Identities=20%  Similarity=0.257  Sum_probs=28.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhC--CCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASM--NKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE  145 (296)
                      .+|.|||+|..|+..|..|++.  |++|+++|
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D   41 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVD   41 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEE
Confidence            3799999999999999999998  79999999

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=89.55  E-value=0.39  Score=40.82  Aligned_cols=30  Identities=17%  Similarity=0.242  Sum_probs=28.7

Q ss_pred             ccEEEEC-CChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIG-GGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIG-gG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|.||| +|..|...|..|++.|++|.+++
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~   52 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGYPISILD   52 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEEC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEE
Confidence            3799999 99999999999999999999999

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=89.54  E-value=0.32  Score=45.50  Aligned_cols=31  Identities=16%  Similarity=0.372  Sum_probs=28.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      ..+|+|||+|-.|+.+|.+|++.|. +++|+|
T Consensus       326 ~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD  357 (615)
T 4gsl_A          326 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVD  357 (615)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEc
Confidence            4589999999999999999999996 799999

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=89.48  E-value=0.39  Score=40.47  Aligned_cols=29  Identities=24%  Similarity=0.319  Sum_probs=27.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||+|..|...|..|.+.|++|++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~   30 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYD   30 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEEC
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEe
Confidence            58999999999999999999999999999

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=89.43  E-value=0.31  Score=45.49  Aligned_cols=31  Identities=16%  Similarity=0.372  Sum_probs=28.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      ..+|+|||+|-.|+.+|.+|++.|. +++|+|
T Consensus       327 ~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD  358 (598)
T 3vh1_A          327 NTKVLLLGAGTLGCYVSRALIAWGVRKITFVD  358 (598)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCCEEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEC
Confidence            4589999999999999999999996 799998

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=89.39  E-value=0.23  Score=42.31  Aligned_cols=30  Identities=20%  Similarity=0.123  Sum_probs=28.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhC-----C-CcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASM-----N-KKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~-----G-~~V~iiE  145 (296)
                      .+|.|||+|..|...|..|++.     | ++|++++
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~   44 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIA   44 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEE
Confidence            3799999999999999999999     9 9999998

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=89.36  E-value=0.29  Score=41.63  Aligned_cols=29  Identities=28%  Similarity=0.350  Sum_probs=26.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      +|.|||+|.+|..+|+.|..++.  +++|+|
T Consensus         2 KV~IiGaG~VG~~~a~~l~~~~~~~el~L~D   32 (294)
T 2x0j_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVD   32 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEe
Confidence            69999999999999999988874  799999

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=89.36  E-value=0.4  Score=43.18  Aligned_cols=30  Identities=27%  Similarity=0.345  Sum_probs=28.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+|+|||+|-.|+++|.+|++.|. +++|+|
T Consensus        41 ~~VlvvG~GGlGs~va~~La~aGvg~i~ivD   71 (434)
T 1tt5_B           41 CKVLVIGAGGLGCELLKNLALSGFRQIHVID   71 (434)
T ss_dssp             CCEEEECSSTHHHHHHHHHHHTTCCCEEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCEEEEEc
Confidence            489999999999999999999996 799998

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=89.32  E-value=0.3  Score=42.70  Aligned_cols=31  Identities=19%  Similarity=0.308  Sum_probs=28.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      ...|+|||+|..|+.+|.+|++.|. +++|+|
T Consensus       118 ~~~VlvvG~GglGs~va~~La~aGvg~i~lvD  149 (353)
T 3h5n_A          118 NAKVVILGCGGIGNHVSVILATSGIGEIILID  149 (353)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEC
Confidence            3489999999999999999999996 799999

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=89.31  E-value=0.37  Score=42.08  Aligned_cols=32  Identities=28%  Similarity=0.201  Sum_probs=29.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+..|+|+|.|.+|..+|..|.+.|.+|++.|
T Consensus       174 ~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD  205 (355)
T 1c1d_A          174 DGLTVLVQGLGAVGGSLASLAAEAGAQLLVAD  205 (355)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCEEEEEe
Confidence            45689999999999999999999999999888

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=89.26  E-value=0.34  Score=40.97  Aligned_cols=30  Identities=20%  Similarity=0.203  Sum_probs=28.5

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|.|||+|..|...|..|.+.|++|.+++
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~   35 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSD   35 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEEC
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEe
Confidence            379999999999999999999999999998

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=89.21  E-value=0.48  Score=37.67  Aligned_cols=29  Identities=24%  Similarity=0.393  Sum_probs=27.5

Q ss_pred             cEEEECC-ChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGG-GSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGg-G~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|+|+|| |..|...+..|.++|++|+++.
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~   31 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIV   31 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEE
Confidence            5999996 9999999999999999999999

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=89.17  E-value=0.35  Score=40.06  Aligned_cols=29  Identities=14%  Similarity=0.319  Sum_probs=27.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-CcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMN-KKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE  145 (296)
                      +|.|||+|..|...|..|++.| ++|.+++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~   31 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIAN   31 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEEC
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEEC
Confidence            5899999999999999999999 9999999

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=89.08  E-value=0.39  Score=40.27  Aligned_cols=28  Identities=21%  Similarity=0.292  Sum_probs=26.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||+|..|...|..|.+ |++|++++
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~   30 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWN   30 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEEC
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEe
Confidence            69999999999999999999 99999999

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=89.05  E-value=0.45  Score=43.66  Aligned_cols=32  Identities=22%  Similarity=0.214  Sum_probs=29.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..+|.|||.|..|...|..|++.|++|++++
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~d   40 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADHGFTVCAYN   40 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHCCCEEEEEe
Confidence            34589999999999999999999999999999

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=89.02  E-value=0.39  Score=42.09  Aligned_cols=30  Identities=17%  Similarity=0.331  Sum_probs=29.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|.|||.|..|...|..|++.|++|++++
T Consensus        23 mkIgiIGlG~mG~~~A~~L~~~G~~V~v~d   52 (358)
T 4e21_A           23 MQIGMIGLGRMGADMVRRLRKGGHECVVYD   52 (358)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CEEEEECchHHHHHHHHHHHhCCCEEEEEe
Confidence            589999999999999999999999999999

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=88.99  E-value=0.23  Score=40.12  Aligned_cols=30  Identities=17%  Similarity=0.234  Sum_probs=28.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEE-Ee
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVAL-FD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~i-iE  145 (296)
                      .+|.|||+|..|...|..|++.|++|++ ++
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~~V~~v~~   54 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQIPAIIANS   54 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTCCEEEECT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEEC
Confidence            4899999999999999999999999999 77

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=88.96  E-value=0.45  Score=44.28  Aligned_cols=30  Identities=27%  Similarity=0.216  Sum_probs=29.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+++|+|+|..|...|..|.+.|++|+++|
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid  378 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILID  378 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEE
Confidence            589999999999999999999999999999

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=88.92  E-value=0.35  Score=41.55  Aligned_cols=30  Identities=27%  Similarity=0.305  Sum_probs=27.5

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      .+|+|||+|..|...|..++..|.  +++++|
T Consensus         7 ~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~D   38 (316)
T 1ldn_A            7 ARVVVIGAGFVGASYVFALMNQGIADEIVLID   38 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEe
Confidence            489999999999999999998875  799999

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=88.83  E-value=0.51  Score=37.70  Aligned_cols=29  Identities=24%  Similarity=0.377  Sum_probs=27.7

Q ss_pred             cEEEECC-ChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGG-GSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGg-G~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|+|.|| |..|...+.+|.++|++|+++.
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~   31 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVV   31 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEE
Confidence            5999998 9999999999999999999998

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=88.82  E-value=0.37  Score=41.39  Aligned_cols=29  Identities=21%  Similarity=0.400  Sum_probs=27.1

Q ss_pred             cEEEECC-ChHHHHHHHHHHhCC--CcEEEEe
Q psy7665         117 DLCVIGG-GSGGISAAKEAASMN--KKVALFD  145 (296)
Q Consensus       117 dVvVIGg-G~aG~~aA~~l~~~G--~~V~iiE  145 (296)
                      +|+|||| |.+|...|..|++.|  .+++++|
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~D   33 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYD   33 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEE
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEe
Confidence            6999998 999999999999988  6899999

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=88.78  E-value=0.28  Score=44.59  Aligned_cols=29  Identities=31%  Similarity=0.540  Sum_probs=27.9

Q ss_pred             cEEEECCChHHHHHHHHHHhC--CCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASM--NKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE  145 (296)
                      +|.|||+|..|+..|..|++.  |++|++++
T Consensus         7 kI~VIG~G~mG~~lA~~La~~g~G~~V~~~d   37 (467)
T 2q3e_A            7 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVD   37 (467)
T ss_dssp             EEEEECCSTTHHHHHHHHHHHCTTSEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEE
Confidence            799999999999999999999  89999999

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=88.73  E-value=0.42  Score=40.27  Aligned_cols=32  Identities=16%  Similarity=0.287  Sum_probs=29.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+..++|+|+|-+|-.+|..|++.|. +|+|+.
T Consensus       116 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~  148 (277)
T 3don_A          116 EDAYILILGAGGASKGIANELYKIVRPTLTVAN  148 (277)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHTTCCSCCEEEC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEe
Confidence            34589999999999999999999998 899998

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=88.68  E-value=0.42  Score=40.02  Aligned_cols=29  Identities=28%  Similarity=0.269  Sum_probs=27.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      +|.|||+|..|...|..|++.|+  +|++++
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d   33 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYD   33 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEe
Confidence            69999999999999999999998  899999

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=88.66  E-value=0.41  Score=40.15  Aligned_cols=31  Identities=19%  Similarity=0.331  Sum_probs=29.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +.+|+|||+|..|...|..|.+.|.+|++++
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~  159 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVKEGAKVFLWN  159 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHHTCEEEEEC
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCCEEEEEE
Confidence            4589999999999999999999999999999

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=88.65  E-value=0.52  Score=40.46  Aligned_cols=32  Identities=16%  Similarity=0.343  Sum_probs=29.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+..++|+|+|-+|-.+|..|++.|. +|+|+.
T Consensus       153 ~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~n  185 (315)
T 3tnl_A          153 IGKKMTICGAGGAATAICIQAALDGVKEISIFN  185 (315)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEE
T ss_pred             cCCEEEEECCChHHHHHHHHHHHCCCCEEEEEE
Confidence            34589999999999999999999998 899998

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=88.60  E-value=0.32  Score=42.81  Aligned_cols=30  Identities=13%  Similarity=0.315  Sum_probs=28.5

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-------CcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMN-------KKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G-------~~V~iiE  145 (296)
                      .+|.|||+|..|...|..|++.|       ++|++++
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~   58 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWI   58 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEE
Confidence            37999999999999999999999       9999999

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=88.60  E-value=0.38  Score=46.35  Aligned_cols=30  Identities=30%  Similarity=0.340  Sum_probs=28.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|.|||+|..|...|..+++.|++|+++|
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D  342 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKE  342 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEEC
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEE
Confidence            479999999999999999999999999999

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=88.57  E-value=0.43  Score=42.77  Aligned_cols=32  Identities=22%  Similarity=0.323  Sum_probs=30.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+..|+|||.|..|..+|..|...|.+|+++|
T Consensus       210 ~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D  241 (436)
T 3h9u_A          210 AGKTACVCGYGDVGKGCAAALRGFGARVVVTE  241 (436)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEC
Confidence            35689999999999999999999999999999

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=88.52  E-value=0.46  Score=41.79  Aligned_cols=31  Identities=35%  Similarity=0.517  Sum_probs=29.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..|.|||+|..|.+.+..+.+.|++|++++
T Consensus        12 ~~~IlIlG~G~lg~~la~aa~~lG~~viv~d   42 (377)
T 3orq_A           12 GATIGIIGGGQLGKMMAQSAQKMGYKVVVLD   42 (377)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence            3479999999999999999999999999999

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=88.51  E-value=0.35  Score=41.40  Aligned_cols=30  Identities=23%  Similarity=0.297  Sum_probs=28.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+|.|||.|..|...|..|++.|+ +|++++
T Consensus        25 ~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~d   55 (312)
T 3qsg_A           25 MKLGFIGFGEAASAIASGLRQAGAIDMAAYD   55 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCEEEEEC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCeEEEEc
Confidence            479999999999999999999999 999999

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=88.35  E-value=0.55  Score=39.68  Aligned_cols=31  Identities=19%  Similarity=0.217  Sum_probs=28.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      +..++|+|+|-+|..++..|++.|. +|+|+.
T Consensus       127 ~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~  158 (283)
T 3jyo_A          127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVAD  158 (283)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEE
Confidence            4589999999999999999999998 699998

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=88.34  E-value=0.46  Score=42.74  Aligned_cols=32  Identities=22%  Similarity=0.204  Sum_probs=29.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+..|+|||.|..|..+|..|+..|.+|+++|
T Consensus       246 ~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d  277 (464)
T 3n58_A          246 AGKVAVVCGYGDVGKGSAQSLAGAGARVKVTE  277 (464)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             cCCEEEEECcCHHHHHHHHHHHHCCCEEEEEe
Confidence            44589999999999999999999999999998

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=88.28  E-value=0.5  Score=43.13  Aligned_cols=31  Identities=23%  Similarity=0.279  Sum_probs=29.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +.+|.|||+|..|...|..|++.|++|++++
T Consensus        15 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~   45 (480)
T 2zyd_A           15 KQQIGVVGMAVMGRNLALNIESRGYTVSIFN   45 (480)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHTTTCCEEEEC
T ss_pred             CCeEEEEccHHHHHHHHHHHHhCCCeEEEEe
Confidence            3479999999999999999999999999999

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=88.27  E-value=0.46  Score=39.98  Aligned_cols=30  Identities=13%  Similarity=0.344  Sum_probs=28.6

Q ss_pred             ccEEEECC-ChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGG-GSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGg-G~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|.|||+ |..|...|..|.+.|++|++++
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~   42 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIE   42 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEE
Confidence            37999999 9999999999999999999999

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=88.20  E-value=0.65  Score=38.50  Aligned_cols=31  Identities=13%  Similarity=0.261  Sum_probs=28.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+ .++|||+|-+|-.++..|.+.|. +|+|++
T Consensus       108 ~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~n  139 (253)
T 3u62_A          108 KE-PVVVVGAGGAARAVIYALLQMGVKDIWVVN  139 (253)
T ss_dssp             CS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             CC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEe
Confidence            35 89999999999999999999998 899999

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=88.18  E-value=0.45  Score=40.22  Aligned_cols=30  Identities=27%  Similarity=0.254  Sum_probs=28.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|.|||+|..|...|..|.+.|++|++++
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~   34 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFD   34 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEEC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEe
Confidence            379999999999999999999999999998

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=88.11  E-value=0.51  Score=41.78  Aligned_cols=30  Identities=20%  Similarity=0.227  Sum_probs=29.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..++|+|||+.|...|..++..|++|+++|
T Consensus       205 ~rL~IfGAGhva~ala~~a~~lg~~V~v~D  234 (386)
T 2we8_A          205 PRMLVFGAIDFAAAVAQQGAFLGYRVTVCD  234 (386)
T ss_dssp             CEEEEECCSTHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEC
Confidence            489999999999999999999999999999

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=88.09  E-value=0.55  Score=42.23  Aligned_cols=32  Identities=16%  Similarity=0.383  Sum_probs=29.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCC---cEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNK---KVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~---~V~iiE  145 (296)
                      .+..|+|+|+|-+|..++..|.+.|.   +++|++
T Consensus       185 ~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd  219 (439)
T 2dvm_A          185 SEITLALFGAGAAGFATLRILTEAGVKPENVRVVE  219 (439)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEE
Confidence            34589999999999999999999997   799998

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=88.07  E-value=0.48  Score=40.66  Aligned_cols=30  Identities=27%  Similarity=0.242  Sum_probs=28.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      .+|.|||.|..|...|..|++.|+  +|++++
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~d   65 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYD   65 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEE
Confidence            479999999999999999999999  999999

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=88.04  E-value=0.29  Score=42.57  Aligned_cols=30  Identities=23%  Similarity=0.495  Sum_probs=28.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-------CcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMN-------KKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G-------~~V~iiE  145 (296)
                      .+|.|||+|..|...|..|++.|       ++|++++
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~   45 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWV   45 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEE
Confidence            37999999999999999999999       8999999

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=88.00  E-value=0.46  Score=40.86  Aligned_cols=32  Identities=25%  Similarity=0.122  Sum_probs=29.2

Q ss_pred             ccccEEEECCC-hHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGG-SGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG-~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+.+++|||+| .+|..+|..|...|.+|++++
T Consensus       176 ~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~n  208 (320)
T 1edz_A          176 YGKKCIVINRSEIVGRPLAALLANDGATVYSVD  208 (320)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTSCEEEEEC
T ss_pred             CCCEEEEECCCcchHHHHHHHHHHCCCEEEEEe
Confidence            45689999999 579999999999999999997

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=87.93  E-value=0.64  Score=38.16  Aligned_cols=29  Identities=21%  Similarity=0.290  Sum_probs=28.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC----cEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNK----KVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~----~V~iiE  145 (296)
                      +|.|||+|..|...|..|.+.|+    +|.+++
T Consensus         4 ~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~   36 (247)
T 3gt0_A            4 QIGFIGCGNMGMAMIGGMINKNIVSSNQIICSD   36 (247)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTSSCGGGEEEEC
T ss_pred             eEEEECccHHHHHHHHHHHhCCCCCCCeEEEEe
Confidence            79999999999999999999998    999999

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=87.91  E-value=0.65  Score=38.58  Aligned_cols=31  Identities=19%  Similarity=0.265  Sum_probs=29.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+ +++|||+|..|...|..|.+.|.+|++++
T Consensus       116 ~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~  146 (263)
T 2d5c_A          116 KG-PALVLGAGGAGRAVAFALREAGLEVWVWN  146 (263)
T ss_dssp             CS-CEEEECCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CC-eEEEECCcHHHHHHHHHHHHCCCEEEEEE
Confidence            45 89999999999999999999999999999

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=87.86  E-value=0.65  Score=36.35  Aligned_cols=30  Identities=17%  Similarity=0.396  Sum_probs=28.3

Q ss_pred             cEEEECC-ChHHHHHHHHHHhCCCcEEEEec
Q psy7665         117 DLCVIGG-GSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       117 dVvVIGg-G~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      .|+|+|| |..|...+.+|.++|++|+++.+
T Consensus         5 ~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r   35 (206)
T 1hdo_A            5 KIAIFGATGQTGLTTLAQAVQAGYEVTVLVR   35 (206)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             EEEEEcCCcHHHHHHHHHHHHCCCeEEEEEe
Confidence            6999998 99999999999999999999983

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=87.86  E-value=0.63  Score=39.11  Aligned_cols=29  Identities=24%  Similarity=0.292  Sum_probs=27.9

Q ss_pred             cEEEECC-ChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGG-GSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGg-G~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|+|.|| |..|...+.+|.++|++|+++.
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~   31 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVS   31 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEE
Confidence            6999998 9999999999999999999998

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=87.85  E-value=0.54  Score=40.85  Aligned_cols=30  Identities=23%  Similarity=0.369  Sum_probs=28.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|.|||.|..|...|..|++.|++|.+++
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~d   38 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANHSVFGYN   38 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEe
Confidence            379999999999999999999999999999

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=87.84  E-value=0.16  Score=41.69  Aligned_cols=30  Identities=17%  Similarity=0.328  Sum_probs=28.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|.|||.|..|...|..|++.|++|+.++
T Consensus         7 mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~   36 (232)
T 3dfu_A            7 LRVGIFDDGSSTVNMAEKLDSVGHYVTVLH   36 (232)
T ss_dssp             CEEEEECCSCCCSCHHHHHHHTTCEEEECS
T ss_pred             cEEEEEeeCHHHHHHHHHHHHCCCEEEEec
Confidence            379999999999999999999999999998

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=87.75  E-value=0.46  Score=40.10  Aligned_cols=30  Identities=23%  Similarity=0.385  Sum_probs=27.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..++|+|+|-.|..+|..|++.| +|++++
T Consensus       128 ~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~  157 (287)
T 1nvt_A          128 DKNIVIYGAGGAARAVAFELAKDN-NIIIAN  157 (287)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEEC
T ss_pred             CCEEEEECchHHHHHHHHHHHHCC-CEEEEE
Confidence            347999999999999999999999 999998

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=87.73  E-value=0.62  Score=39.31  Aligned_cols=32  Identities=9%  Similarity=0.080  Sum_probs=29.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+..++|+|+|-+|-.++..|.+.|. +|+|+.
T Consensus       121 ~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~n  153 (282)
T 3fbt_A          121 KNNICVVLGSGGAARAVLQYLKDNFAKDIYVVT  153 (282)
T ss_dssp             TTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEE
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEe
Confidence            34589999999999999999999998 899998

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=87.72  E-value=0.42  Score=42.59  Aligned_cols=31  Identities=26%  Similarity=0.341  Sum_probs=28.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      +..|+|||+|..|..+|..|...|. +|++++
T Consensus       167 g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~  198 (404)
T 1gpj_A          167 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVAN  198 (404)
T ss_dssp             TCEEEEESCCHHHHHHHHHHHHHCCSEEEEEC
T ss_pred             CCEEEEEChHHHHHHHHHHHHHCCCCEEEEEe
Confidence            4589999999999999999999998 899998

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=87.64  E-value=0.65  Score=40.23  Aligned_cols=30  Identities=23%  Similarity=0.188  Sum_probs=28.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..|.|||+|..|...|..|++.|++|++++
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~   46 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGL   46 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CEEEEECchHHHHHHHHHHHHCcCEEEEEE
Confidence            379999999999999999999999999999

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=87.57  E-value=0.64  Score=42.46  Aligned_cols=29  Identities=21%  Similarity=0.230  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||+|..|...|..|++.|++|++++
T Consensus         4 ~IgvIG~G~mG~~lA~~La~~G~~V~v~d   32 (482)
T 2pgd_A            4 DIALIGLAVMGQNLILNMNDHGFVVCAFN   32 (482)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred             eEEEEChHHHHHHHHHHHHHCCCeEEEEe
Confidence            79999999999999999999999999999

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=87.54  E-value=0.55  Score=38.76  Aligned_cols=30  Identities=23%  Similarity=0.325  Sum_probs=28.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC----CcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMN----KKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G----~~V~iiE  145 (296)
                      .+|.|||+|..|...|..|++.|    ++|.+++
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~   38 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIANANIIKKENLFYYG   38 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEe
Confidence            37999999999999999999999    7999999

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=87.52  E-value=0.43  Score=44.98  Aligned_cols=30  Identities=23%  Similarity=0.289  Sum_probs=28.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      ..|+|||+|..|+++|..|++.|. +++|+|
T Consensus        18 s~VlVVGaGGLGsevak~La~aGVG~ItlvD   48 (640)
T 1y8q_B           18 GRVLVVGAGGIGCELLKNLVLTGFSHIDLID   48 (640)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCeEEEec
Confidence            489999999999999999999996 799999

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=87.52  E-value=0.45  Score=39.40  Aligned_cols=29  Identities=21%  Similarity=0.052  Sum_probs=27.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||+|..|...|..|++.|++|++++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~   30 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSL   30 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECC
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeC
Confidence            58999999999999999999999999987

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=87.43  E-value=0.34  Score=40.80  Aligned_cols=29  Identities=24%  Similarity=0.223  Sum_probs=27.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||+|..|...|..|.+.|++|++++
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~   33 (295)
T 1yb4_A            5 KLGFIGLGIMGSPMAINLARAGHQLHVTT   33 (295)
T ss_dssp             EEEECCCSTTHHHHHHHHHHTTCEEEECC
T ss_pred             EEEEEccCHHHHHHHHHHHhCCCEEEEEc
Confidence            69999999999999999999999999997

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=87.42  E-value=0.55  Score=42.01  Aligned_cols=31  Identities=35%  Similarity=0.396  Sum_probs=29.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..|+|+|+|..|.+.+..+.+.|++|++++
T Consensus        35 ~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d   65 (419)
T 4e4t_A           35 GAWLGMVGGGQLGRMFCFAAQSMGYRVAVLD   65 (419)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEC
Confidence            3489999999999999999999999999999

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=87.41  E-value=0.55  Score=42.82  Aligned_cols=29  Identities=38%  Similarity=0.455  Sum_probs=28.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||+|..|...|..|++.|++|++++
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~d   31 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFN   31 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEe
Confidence            69999999999999999999999999999

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=87.39  E-value=0.72  Score=39.61  Aligned_cols=32  Identities=22%  Similarity=0.237  Sum_probs=28.2

Q ss_pred             ccccEEEECC-ChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGG-GSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGg-G~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ....|+|.|| |..|...+..|.++|++|+++.
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~   50 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRTQGRTVRGFD   50 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCEEEEEe
Confidence            3458999998 9999999999999999999999

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=87.37  E-value=0.71  Score=42.16  Aligned_cols=30  Identities=20%  Similarity=0.198  Sum_probs=28.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|.|||.|..|...|..|++.|++|++++
T Consensus         5 ~kIgiIGlG~MG~~lA~~L~~~G~~V~v~d   34 (484)
T 4gwg_A            5 ADIALIGLAVMGQNLILNMNDHGFVVCAFN   34 (484)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CEEEEEChhHHHHHHHHHHHHCCCEEEEEe
Confidence            479999999999999999999999999999

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=87.36  E-value=0.69  Score=38.82  Aligned_cols=32  Identities=9%  Similarity=0.134  Sum_probs=28.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+..++|+|+|-+|..++..|++.|. +|+|+.
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~  151 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIAN  151 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEEC
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEe
Confidence            34589999999999999999999995 899998

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=87.36  E-value=0.56  Score=40.15  Aligned_cols=29  Identities=28%  Similarity=0.469  Sum_probs=26.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--CcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMN--KKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE  145 (296)
                      +|+|||+|.+|...|..|+..+  .+++++|
T Consensus         2 KI~IiGaG~vG~~~a~~l~~~~~~~el~L~D   32 (310)
T 2xxj_A            2 KVGIVGSGMVGSATAYALALLGVAREVVLVD   32 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEe
Confidence            6999999999999999999987  5799999

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=87.28  E-value=0.72  Score=38.83  Aligned_cols=31  Identities=23%  Similarity=0.253  Sum_probs=28.7

Q ss_pred             cccEEEEC-CChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIG-GGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIG-gG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..++|+| +|.+|..+|..|++.|.+|+++.
T Consensus       119 gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~  150 (287)
T 1lu9_A          119 GKKAVVLAGTGPVGMRSAALLAGEGAEVVLCG  150 (287)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEE
Confidence            34799999 89999999999999999999998

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=87.25  E-value=0.5  Score=43.71  Aligned_cols=31  Identities=16%  Similarity=0.302  Sum_probs=28.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      ..+|+|||+|..|+++|..|++.|. +++|+|
T Consensus        32 ~~~VlvvG~GGlGseiak~La~aGVg~itlvD   63 (531)
T 1tt5_A           32 SAHVCLINATATGTEILKNLVLPGIGSFTIID   63 (531)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHTTTCSEEEEEC
T ss_pred             cCeEEEECcCHHHHHHHHHHHHcCCCeEEEEe
Confidence            3489999999999999999999996 799999

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=87.24  E-value=0.46  Score=45.68  Aligned_cols=30  Identities=27%  Similarity=0.298  Sum_probs=28.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|.|||+|..|...|..+++.|++|+++|
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D  344 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASKGTPILMKD  344 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CEEEEECCChhhHHHHHHHHhCCCEEEEEE
Confidence            479999999999999999999999999999

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=87.24  E-value=0.71  Score=38.94  Aligned_cols=32  Identities=13%  Similarity=0.214  Sum_probs=28.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+..++|+|+|-+|-..+..|++.|. +|+|+.
T Consensus       125 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~  157 (281)
T 3o8q_A          125 KGATILLIGAGGAARGVLKPLLDQQPASITVTN  157 (281)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEE
T ss_pred             cCCEEEEECchHHHHHHHHHHHhcCCCeEEEEE
Confidence            34589999999999999999999995 899999

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=87.21  E-value=0.53  Score=41.88  Aligned_cols=31  Identities=29%  Similarity=0.468  Sum_probs=29.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ...|+|+|||..|.+.+..+.+.|++|++++
T Consensus        24 ~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d   54 (403)
T 3k5i_A           24 SRKVGVLGGGQLGRMLVESANRLNIQVNVLD   54 (403)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence            4589999999999999999999999999999

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=87.19  E-value=0.47  Score=40.34  Aligned_cols=31  Identities=13%  Similarity=0.243  Sum_probs=28.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..+|-+||-|..|...|..|.+.|++|++++
T Consensus         5 s~kIgfIGLG~MG~~mA~~L~~~G~~V~v~d   35 (297)
T 4gbj_A            5 SEKIAFLGLGNLGTPIAEILLEAGYELVVWN   35 (297)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTCEEEEC-
T ss_pred             CCcEEEEecHHHHHHHHHHHHHCCCeEEEEe
Confidence            3479999999999999999999999999999

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=87.08  E-value=0.75  Score=39.43  Aligned_cols=32  Identities=19%  Similarity=0.383  Sum_probs=29.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+..++|+|+|-+|-.++..|++.|. +|+|+.
T Consensus       147 ~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~n  179 (312)
T 3t4e_A          147 RGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFN  179 (312)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEE
Confidence            34589999999999999999999997 799998

>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}

Probab=86.93  E-value=0.55  Score=40.99  Aligned_cols=29  Identities=21%  Similarity=0.338  Sum_probs=27.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|+|+|+|..|...+..+.+.|+++++++
T Consensus         1 ~iliiG~g~~g~~~~~a~~~~G~~v~~~~   29 (369)
T 3aw8_A            1 MIGILGGGQLGRMLALAGYPLGLSFRFLD   29 (369)
T ss_dssp             CEEEECCSHHHHHHHHHHTTBTCCEEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEEe
Confidence            48999999999999999999999999999

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=86.88  E-value=0.74  Score=39.83  Aligned_cols=32  Identities=28%  Similarity=0.474  Sum_probs=29.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+..|.|||.|..|...|..++..|++|++++
T Consensus       149 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d  180 (334)
T 2dbq_A          149 YGKTIGIIGLGRIGQAIAKRAKGFNMRILYYS  180 (334)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCEEEEEC
Confidence            34579999999999999999999999999999

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	296
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	8e-22
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	2e-21
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	4e-21
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	1e-20
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	1e-19
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	4e-19
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	1e-18
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	6e-18
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	3e-17
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	4e-16
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	4e-16
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	2e-15
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	8e-13
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	9e-12
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	1e-09
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	5e-09
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	3e-08
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	1e-07
d1ebda3	115	d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenas	2e-07
d1h6va3	133	d.87.1.1 (A:367-499) Mammalian thioredoxin reducta	2e-07
d1feca3	128	d.87.1.1 (A:358-485) Trypanothione reductase {Crit	4e-07
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	4e-07
d1v59a3	123	d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenas	7e-07
d1onfa3	119	d.87.1.1 (A:377-495) Glutathione reductase {Plasmo	1e-06
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	2e-06
d1ojta3	128	d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenas	2e-06
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	2e-06
d1lvla3	123	d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenas	3e-06
d1gesa3	115	d.87.1.1 (A:336-450) Glutathione reductase {Escher	4e-06
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	4e-06
d3grsa3	115	d.87.1.1 (A:364-478) Glutathione reductase {Human	6e-06
d1xdia2	118	d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenas	8e-06
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	9e-06
d3lada3	124	d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenas	1e-05
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	2e-05
d2cula1	230	c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {T	5e-05
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	5e-05
d1dxla3	123	d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenas	5e-05
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	6e-05
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	6e-05
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	6e-05
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	7e-05
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	1e-04
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	1e-04
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	1e-04
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	2e-04
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	3e-04
d1mo9a3	140	d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl c	4e-04
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	8e-04
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	0.001
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	0.002

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 90.0 bits (222), Expect = 8e-22
 Identities = 44/182 (24%), Positives = 70/182 (38%), Gaps = 16/182 (8%)

Query: 93  ECQEVYHDGRFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQH 152
           E  E    G     +D N    +YD   IGGG+ G   +    +M  +  + D       
Sbjct: 21  EILEAPDGGEVIYNVDEN-DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDR------ 73

Query: 153 GTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM---KKSFTWKTLVDNVQKY 209
                LGG+C +  C+P  LF   +     A T     +     +K    K +VD  +  
Sbjct: 74  --WPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKEVVDLFRAG 131

Query: 210 IRNLNN--NYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD 267
               +   N++ + + N     N  A  +D H V+     +   A+N I+AVG  P   D
Sbjct: 132 RNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEA--AGKVFKAKNLILAVGAGPGTLD 189

Query: 268 IP 269
           +P
Sbjct: 190 VP 191

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 87.7 bits (216), Expect = 2e-21
 Identities = 59/157 (37%), Positives = 84/157 (53%), Gaps = 13/157 (8%)

Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHR 175
           YD   IGGGSGGI++   AA   +K AL +            LGGTCVNVGC+PKK+   
Sbjct: 3   YDYIAIGGGSGGIASINRAAMYGQKCALIEA---------KELGGTCVNVGCVPKKVMWH 53

Query: 176 ASLLNE-EATTSDNFGFHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA 233
           A+ + E       ++GF      F W+TL+ +   YI  ++ +YE  L KN +D     A
Sbjct: 54  AAQIREAIHMYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFA 113

Query: 234 VFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPG 270
            FVD   ++  G   T++A + +IA GGRP++P  P 
Sbjct: 114 RFVDAKTLEVNG--ETITADHILIATGGRPSHPREPA 148

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 88.2 bits (217), Expect = 4e-21
 Identities = 63/160 (39%), Positives = 89/160 (55%), Gaps = 21/160 (13%)

Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHR 175
           YDL VIGGGSGG++AA+ AA  N KVAL +            LGGTCVNVGC+PKK+   
Sbjct: 2   YDLIVIGGGSGGMAAARRAARHNAKVALVEK---------SRLGGTCVNVGCVPKKIMFN 52

Query: 176 ASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVF 235
           A+ +++    S ++GF  K SF    LV+   KYI+ LNN Y + L K+K+D +   A F
Sbjct: 53  AASVHDILENSRHYGFDTKFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASF 112

Query: 236 VDKHRVKF------------AGEERTVSAQNFIIAVGGRP 263
           + ++R+                 E  +  +N +IAVG +P
Sbjct: 113 LSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKP 152

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 86.1 bits (212), Expect = 1e-20
 Identities = 36/128 (28%), Positives = 50/128 (39%), Gaps = 9/128 (7%)

Query: 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLF 173
            +YD+ V+GGG GG SAA  AA    KVA+ +            LGG C+NVGCIP K  
Sbjct: 5   AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKT--------LGGVCLNVGCIPSKAL 56

Query: 174 HRASLLNEEATTSDNFGFHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK 232
              + + +E       G    +       L       +  L        +  K+D     
Sbjct: 57  LHNAAVIDEVRHLAANGIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGD 116

Query: 233 AVFVDKHR 240
             F+D H 
Sbjct: 117 GQFLDPHH 124

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 83.0 bits (204), Expect = 1e-19
 Identities = 45/157 (28%), Positives = 64/157 (40%), Gaps = 13/157 (8%)

Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKL 172
           + + D+ +IGGG GG  AA +AA +  K    +            LGGTC+NVGCIP K 
Sbjct: 1   SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGA--------LGGTCLNVGCIPSKA 52

Query: 173 FHRASLLNEEATTS-DNFGFHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFN 230
              +S +  EA  S  N G  +         ++    K + NL    E   +KNK+ Y  
Sbjct: 53  LLHSSHMYHEAKHSFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVK 112

Query: 231 AKAVFVDKHRVKFAGEERTV---SAQNFIIAVGGRPT 264
               FV    +     E        ++ IIA G    
Sbjct: 113 GYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVK 149

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.9 bits (201), Expect = 4e-19
 Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 10/155 (6%)

Query: 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLF 173
             YD  VIGGGSGG+++A+ AA +  + A+ +            LGGTCVNVGC+PKK+ 
Sbjct: 2   ASYDYLVIGGGSGGLASARRAAELGARAAVVES---------HKLGGTCVNVGCVPKKVM 52

Query: 174 HRASLLNEEATTSDNFGFHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK 232
              ++ +E      ++GF   +  F W+ + +    Y+  LN  Y+  L K+ I+     
Sbjct: 53  WNTAVHSEFMHDHADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGH 112

Query: 233 AVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD 267
           A F    +       +  +A + +IA GG P+ P 
Sbjct: 113 AAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPH 147

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 80.3 bits (197), Expect = 1e-18
 Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 12/155 (7%)

Query: 114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLF 173
            + +  V+G G GG  AA  AA + +KV + +            LGG C+NVGCIP K  
Sbjct: 2   IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEK---------GNLGGVCLNVGCIPSKAL 52

Query: 174 HRASLLNEEATTSDNF-GFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK 232
             AS   E+A  S+         +  +  + +     ++ L    E  L+ NK++    +
Sbjct: 53  ISASHRYEQAKHSEEMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGE 112

Query: 233 AVFVDKHR--VKFAGEERTVSAQNFIIAVGGRPTY 265
           A FVD +   V      +T + +N IIA G RP  
Sbjct: 113 AYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIE 147

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 79.0 bits (193), Expect = 6e-18
 Identities = 76/161 (47%), Positives = 104/161 (64%), Gaps = 5/161 (3%)

Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKL 172
           +YD+DL +IGGGSGG++AAKEAA  +KKV + DFVTP+  GT WGLGGTCVNVGCIPKKL
Sbjct: 1   SYDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKL 60

Query: 173 FHRASLLNEEATTSDNFGFHMKK--SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFN 230
            H+A+LL +    S N+G+ ++      W+ + ++VQ +I +LN  Y   L + K+ Y N
Sbjct: 61  MHQAALLGQALKDSRNYGWKLEDTVKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYEN 120

Query: 231 AKAVFVDK---HRVKFAGEERTVSAQNFIIAVGGRPTYPDI 268
           A   F+           G+E+  SA+ F+IA G RP Y  I
Sbjct: 121 AYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRYLGI 161

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 77.0 bits (188), Expect = 3e-17
 Identities = 34/160 (21%), Positives = 57/160 (35%), Gaps = 15/160 (9%)

Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
           QT    L +IGGG GG  AA  A  +     L +            LGGTC+N+GCIP K
Sbjct: 2   QTIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG---------QALGGTCLNIGCIPSK 52

Query: 172 LFHRASLLNEEATTSDNFGFHM----KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKID 227
                +    +A+                      V      +  L       L+K+ + 
Sbjct: 53  ALIHVAEQFHQASRFTEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVK 112

Query: 228 YFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD 267
             +  A  +D  +V+   + + +  ++ ++A G       
Sbjct: 113 VVHGWAKVLDGKQVEV--DGQRIQCEHLLLATGSSSVELP 150

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 73.8 bits (180), Expect = 4e-16
 Identities = 48/169 (28%), Positives = 75/169 (44%), Gaps = 12/169 (7%)

Query: 113 TYDYDLCVIGGGSGGISAAKEAASMN-KKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKK 171
           +  YDL VIG GSGG+ A   AAS++ K+VA+ D            LGGTCVNVGC+PKK
Sbjct: 1   SRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKK 60

Query: 172 LFHRASLLNEEATTSDNFGFHMKKS---FTWKTLVDNVQKYIRNLNNNYEKELEKNK-ID 227
           L    +   +    S  FG+ + +      WK L+    K +  +N++YE      + + 
Sbjct: 61  LMVTGANYMDTIRESAGFGWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLT 120

Query: 228 YFNAKAVFVD-------KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIP 269
           +        D       +     +    T+  +  ++A G  P +  I 
Sbjct: 121 FHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIE 169

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.8 bits (180), Expect = 4e-16
 Identities = 40/176 (22%), Positives = 63/176 (35%), Gaps = 28/176 (15%)

Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKL 172
              +D+ +IGGG  G  AA +AA +    A  +            LGGTC+NVGCIP K 
Sbjct: 3   NKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK--------LGGTCLNVGCIPSKA 54

Query: 173 FHRASLLNEEATTSDN---FGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYF 229
               S L  +  T         +                 ++ L    E   +KNK+ Y+
Sbjct: 55  LLNNSHLFHQMHTEAQKRGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYY 114

Query: 230 NAKAVFVDKHRVKFAGE---------ERTVSAQNFII--------AVGGRPTYPDI 268
                F D+ +++             +  +  +N I+         VG RP    +
Sbjct: 115 KGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFVGRRPYIAGL 170

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 71.6 bits (174), Expect = 2e-15
 Identities = 43/130 (33%), Positives = 66/130 (50%), Gaps = 5/130 (3%)

Query: 116 YDLCVIGGGSGGISAAKEAASMN-KKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFH 174
           +DL VIG GSGG+ AA  AA++  K+VA+ D            LGGTCVNVGC+PKKL  
Sbjct: 4   FDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKLMV 63

Query: 175 RASLLNEEATTSDNFGFHMKKS---FTWKTLVDNVQKYIRNLNNNYEKEL-EKNKIDYFN 230
             +   E    S  FG+   ++     WK L+    + + N+N +Y++   +   +++F 
Sbjct: 64  TGAQYMEHLRESAGFGWEFDRTTLRAEWKNLIAVKDEAVLNINKSYDEMFRDTEGLEFFL 123

Query: 231 AKAVFVDKHR 240
                  K+ 
Sbjct: 124 GWGSLESKNV 133

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 64.3 bits (155), Expect = 8e-13
 Identities = 29/162 (17%), Positives = 53/162 (32%), Gaps = 18/162 (11%)

Query: 117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRA 176
            + ++GGG  G  AA  AA+ + +      +         G+GG  V   C+P K F  +
Sbjct: 3   RIVILGGGPAGYEAALVAATSHPETTQVTVIDCD------GIGGAAVLDDCVPSKTFIAS 56

Query: 177 SLLNEEATTSDNFGFH---MKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA 233
           + L  E   + + GFH        +   +   V+      + +   +L    +     + 
Sbjct: 57  TGLRTELRRAPHLGFHIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRG 116

Query: 234 VFVDKHRVKFA---------GEERTVSAQNFIIAVGGRPTYP 266
             +D                G      A   ++A G  P   
Sbjct: 117 ELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRIL 158

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 61.2 bits (147), Expect = 9e-12
 Identities = 24/134 (17%), Positives = 47/134 (35%)

Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHR 175
           +D+ VIG G GG  AA ++A +  K AL +     +  T  G     V        L   
Sbjct: 4   FDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSS 63

Query: 176 ASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVF 235
                   +   +     + +    T++    + +RNL       ++ N +  F      
Sbjct: 64  YKFHEAHESFKLHGISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKL 123

Query: 236 VDKHRVKFAGEERT 249
           +   +V+    + +
Sbjct: 124 LAGKKVEVTAADGS 137

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 55.3 bits (132), Expect = 1e-09
 Identities = 26/164 (15%), Positives = 47/164 (28%), Gaps = 16/164 (9%)

Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC--VNVGCIPKKLF 173
            +  +IG G+ G+  A + A + K V +FD         +   GG C   N+   P    
Sbjct: 5   SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYL 64

Query: 174 HRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA 233
            +     + A         +             +      +   E+ +E  K +     A
Sbjct: 65  SQNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGA 124

Query: 234 VFVDKHRVK--------------FAGEERTVSAQNFIIAVGGRP 263
             + +  V                         +N I+A GG  
Sbjct: 125 KILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLS 168

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 53.5 bits (127), Expect = 5e-09
 Identities = 33/167 (19%), Positives = 53/167 (31%), Gaps = 17/167 (10%)

Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFH 174
            YD+ VIGGG  G+ AA  AA     V L D             GG C     +P     
Sbjct: 2   HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIV 61

Query: 175 RASLLNEEATTSDNFGFHMKKSFTW---------------KTLVDNVQKYIRNLNNNYEK 219
           +    N     S    F+ +   T+                  V N  + + +      K
Sbjct: 62  KHIPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLK 121

Query: 220 ELEKNKIDYFNAKAVFVDKHRVKFAGEE--RTVSAQNFIIAVGGRPT 264
           +L          + +  +  + K    +    +   + +IAVGG+  
Sbjct: 122 DLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKSV 168

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 51.4 bits (122), Expect = 3e-08
 Identities = 29/180 (16%), Positives = 61/180 (33%), Gaps = 20/180 (11%)

Query: 106 YLDNNFQTYDYDLCVIGGGSGGISAAKEAASM-NKKVALFDFVTPSQHGTVWGLGGTCVN 164
           Y+ +     + D+ V+G GS G+SAA E +   N +VA+ +     Q  +    GG    
Sbjct: 24  YMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIE-----QSVS---PGGGAWL 75

Query: 165 VGCIPKKLFHRASL------LNEEATTSDNFGFHMKKSFTWKTLVDNVQKY----IRNLN 214
            G +   +  R         +       D +      +    T++  +       + N  
Sbjct: 76  GGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIMSKLLARPNVKLFNAV 135

Query: 215 NNYEKELEKNKIDYFNAKAVFVD-KHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGARL 273
              +  ++ N++         V   H  +   +   + A+  + + G    +      RL
Sbjct: 136 AAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRL 195

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.8 bits (117), Expect = 1e-07
 Identities = 14/128 (10%), Positives = 35/128 (27%), Gaps = 8/128 (6%)

Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKL 172
             +YD+ V+G G      +   +   KKV   D     ++      GG   ++  + +  
Sbjct: 4   DEEYDVIVLGTGLTECILSGIMSVNGKKVLHMD-----RNPYY---GGESSSITPLEELY 55

Query: 173 FHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAK 232
                L     T      +++     +      + K +         + +  +  +    
Sbjct: 56  KRFQLLEGPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKG 115

Query: 233 AVFVDKHR 240
                   
Sbjct: 116 GKIYKVPS 123

>d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 115

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 46.6 bits (110), Expect = 2e-07
 Identities = 14/49 (28%), Positives = 19/49 (38%)

Query: 10  EVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
           E    I A+I   NA ++     L +  G   +D    I  HPT  E  
Sbjct: 59  EDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEIA 107

>d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 133

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.7 bits (110), Expect = 2e-07
 Identities = 20/42 (47%), Positives = 25/42 (59%)

Query: 17  AEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
             +   NAGE+TQG+A  +  G  KQ  D+ IGIHP CAE  
Sbjct: 72  FHVLGPNAGEVTQGFAAALKCGLTKQQLDSTIGIHPVCAEIF 113

>d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 128

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 46.2 bits (109), Expect = 4e-07
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 17  AEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
             +  +++ EI Q  A+ + +GA   DF   IG+HPT AE +
Sbjct: 69  VHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEEL 110

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 48.3 bits (114), Expect = 4e-07
 Identities = 18/57 (31%), Positives = 27/57 (47%)

Query: 110 NFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVG 166
                ++D  VIG G  G+ AA + +   +  AL   V P++  TV   GG  V +G
Sbjct: 2   KLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALG 58

>d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.0 bits (106), Expect = 7e-07
 Identities = 15/42 (35%), Positives = 20/42 (47%)

Query: 17  AEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
           A I   NAGE+     L +  GA  +D   +   HPT +EA 
Sbjct: 68  AHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSEAF 109

>d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 119

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 44.4 bits (104), Expect = 1e-06
 Identities = 20/42 (47%), Positives = 25/42 (59%)

Query: 17  AEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
             I   NA EI QG+A+ + + A K+DFD  I IHPT AE  
Sbjct: 74  LHIIGLNADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEF 115

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 46.1 bits (108), Expect = 2e-06
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 112 QTYDYDLCVIGGGSGGISAAKEAA--SMNKKVALFDFVTPSQHGTVWGLGGTCVNVG 166
           QT+  DL ++G G  G+ AA  AA  + N K+AL   V P +  TV   GG+     
Sbjct: 2   QTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQ 58

>d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 128

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 12/42 (28%), Positives = 17/42 (40%)

Query: 17  AEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
             I   N G++     L + +G    D    I  HPT  E+I
Sbjct: 68  GGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIHPHPTLGESI 109

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 45.9 bits (107), Expect = 2e-06
 Identities = 12/55 (21%), Positives = 20/55 (36%)

Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVG 166
           +    D  VIGGG  G+ AA           +   +   +  +    GG   ++G
Sbjct: 2   KVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSHSAAAQGGMQASLG 56

>d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 43.2 bits (101), Expect = 3e-06
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 17  AEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
            +       E++  +A  + +GA  +D    I  HPT  EA+
Sbjct: 68  WQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGEAV 109

>d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 115

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 42.9 bits (100), Expect = 4e-06
 Identities = 16/42 (38%), Positives = 23/42 (54%)

Query: 17  AEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
                    E+ QG+A+ + +GA K+DFD  + IHPT AE  
Sbjct: 70  IHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEF 111

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 45.4 bits (106), Expect = 4e-06
 Identities = 13/87 (14%), Positives = 21/87 (24%)

Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKL 172
           +    + V+G GS G +A+  A      V L D    S   ++   GG            
Sbjct: 17  SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAH 76

Query: 173 FHRASLLNEEATTSDNFGFHMKKSFTW 199
                +                     
Sbjct: 77  GVEDKVEWFIEDAMKGGRQQNDIKLVT 103

>d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 6e-06
 Identities = 16/42 (38%), Positives = 24/42 (57%)

Query: 17  AEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
             +      E+ QG+A+ V +GA K DFD  + IHPT +E +
Sbjct: 70  IHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEEL 111

>d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 118

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 42.0 bits (98), Expect = 8e-06
 Identities = 7/45 (15%), Positives = 18/45 (40%)

Query: 14  FITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
            I   + +  A E+    A+ V       +    + ++P+ + +I
Sbjct: 65  VIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAVYPSLSGSI 109

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 44.2 bits (103), Expect = 9e-06
 Identities = 17/85 (20%), Positives = 21/85 (24%)

Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFH 174
             D+ V+G G  G SAA  A     KV L +             GG         K    
Sbjct: 16  TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKI 75

Query: 175 RASLLNEEATTSDNFGFHMKKSFTW 199
             S       T          +   
Sbjct: 76  TDSPELMFEDTMKGGQNINDPALVK 100

>d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 124

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 10/42 (23%), Positives = 20/42 (47%)

Query: 17  AEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
             +   +A E+ Q  A+ +  G   +D   ++  HP  +EA+
Sbjct: 68  VHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSEAL 109

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 16/62 (25%), Positives = 21/62 (33%)

Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHR 175
            D+ +IG G  G++AA  A     KV L +        T    GG          KL   
Sbjct: 24  TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIE 83

Query: 176 AS 177
             
Sbjct: 84  DK 85

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} Length = 230

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

 Score = 41.5 bits (97), Expect = 5e-05
 Identities = 8/29 (27%), Positives = 12/29 (41%)

Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALF 144
           Y + ++G G  G   A   A    +V L 
Sbjct: 3   YQVLIVGAGFSGAETAFWLAQKGVRVGLL 31

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 41.6 bits (96), Expect = 5e-05
 Identities = 12/48 (25%), Positives = 19/48 (39%)

Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCV 163
           +D+ V+G GS G++A  + A    K  L D   P             +
Sbjct: 4   FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSHHGDTRII 51

>d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 39.9 bits (93), Expect = 5e-05
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 17  AEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI 58
             I + NAGE+    A+ +   A  +D   +   HPT +EAI
Sbjct: 68  VHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAI 109

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 41.4 bits (96), Expect = 6e-05
 Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 109 NNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVG 166
           N    +  D+ +IG G+ G+S A   A    +V +      ++  T +  GG      
Sbjct: 1   NTLPEHSCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGSTFYAQGGIAAVFD 57

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 40.7 bits (94), Expect = 6e-05
 Identities = 27/176 (15%), Positives = 47/176 (26%), Gaps = 26/176 (14%)

Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFD------------FVTPSQHGTVWGLG 159
           +T++  LC++G G    +AA  AA    K  LF+              T +      G  
Sbjct: 2   ETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFP 61

Query: 160 GTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLN----- 214
              + V    K             T +        K F   T    +      L      
Sbjct: 62  EGILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVA 121

Query: 215 --NNYEKELEKNKIDYFNAKAVFVDKHRVKF-------AGEERTVSAQNFIIAVGG 261
             +    +     ++  +   V       +        AG+ +    +  I A G 
Sbjct: 122 KGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGT 177

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.3 bits (95), Expect = 6e-05
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD 145
           DYD+ V+G G      +   +   KKV   D
Sbjct: 5   DYDVIVLGTGITECILSGLLSVDGKKVLHID 35

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.5 bits (96), Expect = 7e-05
 Identities = 18/137 (13%), Positives = 32/137 (23%), Gaps = 7/137 (5%)

Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFH 174
             D+ ++G GS G+SAA   A     + +    +          GG     G +   +  
Sbjct: 50  VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA------PGGGSWLGGQLFSAMVM 103

Query: 175 RASLLNEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELE-KNKIDYFNAKA 233
           R             +             +       + L     K        D      
Sbjct: 104 RKPAHLFLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPP 163

Query: 234 VFVDKHRVKFAGEERTV 250
               +  V       T+
Sbjct: 164 TEKGEVTVAGVVTNWTL 180

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 19/85 (22%), Positives = 29/85 (34%)

Query: 115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFH 174
            Y+  VIGGG  G + A   A  NK  ALF+  T     T    G    +  C  +  F 
Sbjct: 4   HYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTSAAAGMLGAHAECEERDAFF 63

Query: 175 RASLLNEEATTSDNFGFHMKKSFTW 199
             ++ ++          +       
Sbjct: 64  DFAMHSQRLYKGLGEELYALSGVDI 88

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 40.7 bits (93), Expect = 1e-04
 Identities = 19/151 (12%), Positives = 44/151 (29%), Gaps = 10/151 (6%)

Query: 117 DLCVIGGGSGGISAAKEAASMN-KKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHR 175
            + V+G G  GISAAK  +      + + +         +   GG           +   
Sbjct: 2   RVIVVGAGMSGISAAKRLSEAGITDLLILE-----ATDHI---GGRMHKTNFAGINVELG 53

Query: 176 ASLLNEEATTSDNFGF-HMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAV 234
           A+ +        N  +  +  +   +    +     +N+        +++ +      A 
Sbjct: 54  ANWVEGVNGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELAD 113

Query: 235 FVDKHRVKFAGEERTVSAQNFIIAVGGRPTY 265
            V++   K +         +  I    R   
Sbjct: 114 SVEEMGEKLSATLHASGRDDMSILAMQRLNE 144

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 112 QTYDYDLCVIGGGSGGISAAKEAASMNK----KVALFDFVTPSQHGTVWGLGGTCVNVG 166
           +  + D+ +IGGG  G  AA EAA   K    KV L +     + G V   G + +N  
Sbjct: 18  EVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQ-GLSAINTY 75

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145
           YD+ ++G G  G +AA  +A    +  L  
Sbjct: 2   YDVLIVGSGPAGAAAAIYSARKGIRTGLMG 31

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 38.6 bits (89), Expect = 3e-04
 Identities = 16/81 (19%), Positives = 22/81 (27%), Gaps = 2/81 (2%)

Query: 113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHG--TVWGLGGTCVNVGCIPK 170
           T    L ++G G  G +AA  AA  N +  L   +        T                
Sbjct: 3   TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGP 62

Query: 171 KLFHRASLLNEEATTSDNFGF 191
            L  R      +  T   F  
Sbjct: 63  LLMERMHEHATKFETEIIFDH 83

>d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 37.4 bits (86), Expect = 4e-04
 Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 2/45 (4%)

Query: 17  AEISSNNAGEITQGYALGVMLGAYKQDFDALIGI--HPTCAEAIS 59
           A      A +  Q   + +  G    +   +  +  +PT    +S
Sbjct: 84  AHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNPTHFIQLS 128

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 37.9 bits (87), Expect = 8e-04
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVALFD 145
           YD  ++G G  G   A E   +NKKV + +
Sbjct: 2   YDYIIVGSGLFGAVCANELKKLNKKVLVIE 31

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 116 YDLCVIGGGSGGISAAKEAASMNKKVAL 143
           YD+ ++G G  G + A+E      KVA+
Sbjct: 5   YDVVIVGSGPIGCTYARELVGAGYKVAM 32

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 117 DLCVIGGGSGGISAAKEAASMNKKVALFD 145
           D+ V+GGG  G++AAK        V + +
Sbjct: 1   DVVVVGGGISGMAAAKLLHDSGLNVVVLE 29

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	296
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.92
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.89
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.86
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.83
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.82
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.81
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.81
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	99.8
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	99.79
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.77
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.77
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.75
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.71
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.67
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.56
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.5
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.5
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.49
d1v59a3	123	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.45
d1xdia2	118	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.45
d1ojta3	128	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.45
d3lada3	124	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.44
d3grsa3	115	Glutathione reductase {Human (Homo sapiens) [TaxId	99.42
d1dxla3	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.42
d1ebda3	115	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.42
d1lvla3	123	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.42
d1gesa3	115	Glutathione reductase {Escherichia coli [TaxId: 56	99.4
d1onfa3	119	Glutathione reductase {Plasmodium falciparum [TaxI	99.4
d1feca3	128	Trypanothione reductase {Crithidia fasciculata [Ta	99.38
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.37
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.36
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.34
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.27
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.27
d1h6va3	133	Mammalian thioredoxin reductase {Rat (Rattus norve	99.26
d1mo9a3	140	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.26
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.25
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.25
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.24
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.22
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.21
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.21
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.21
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	99.21
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.19
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.16
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.15
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.12
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.1
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.09
d1nhpa3	126	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.07
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	99.07
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.06
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	99.05
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.05
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.04
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.03
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.02
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	99.01
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.01
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.0
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	99.0
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	98.99
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	98.99
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.98
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.98
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.96
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.94
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.92
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	98.91
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.89
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.89
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	98.88
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.88
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.85
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.85
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.82
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.81
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.81
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.78
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.77
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.77
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.77
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.76
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.7
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.68
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.67
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.66
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.66
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.63
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.61
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	98.6
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.49
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.43
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.41
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.38
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.27
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.15
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	98.09
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.09
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	98.07
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.87
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.84
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.81
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	97.64
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.63
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.42
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	97.35
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.33
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	97.27
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.24
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.21
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.07
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.99
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.55
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.52
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.51
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.49
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	96.48
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.46
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	96.36
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.28
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.24
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.15
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.11
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.89
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.88
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	95.4
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	95.24
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.17
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.05
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.03
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	95.02
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	95.01
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	94.99
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	94.98
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	94.97
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	94.96
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	94.9
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	94.88
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	94.73
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.71
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	94.66
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	94.64
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.57
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	94.56
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	94.53
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	94.5
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.39
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	94.25
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	94.18
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	93.89
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	93.88
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	93.88
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	93.84
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	93.74
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	93.69
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	93.58
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	93.42
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	93.39
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	93.36
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.29
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	93.07
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	93.0
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	92.8
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	92.77
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	92.74
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.74
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	92.56
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	92.54
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	92.36
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	92.33
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	92.21
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	92.18
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	91.39
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	91.19
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	90.99
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	90.83
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	90.77
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	89.93
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	89.83
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	89.57
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	89.54
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	89.48
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	89.34
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	89.32
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	89.26
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	89.06
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	88.94
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	88.61
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	88.36
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	87.83
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	87.23
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	87.0
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	86.82
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	86.54
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	86.09
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	85.96
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	85.81
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	85.42
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	85.36
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	85.32
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	85.19
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	84.7
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	84.53
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	83.84
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	83.35
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	82.95
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	82.9
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	82.23
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	81.46
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	81.4
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	81.27
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	81.13
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	80.99
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	80.93
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	80.25
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	80.14

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.92  E-value=2.1e-25  Score=188.66  Aligned_cols=166  Identities=40%  Similarity=0.678  Sum_probs=127.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKK  195 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~  195 (296)
                      |||+||||||+|+.||.++++.|++|+|+|  + .      .+||+|.+.+|+|++.+++.............||+....
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE--~-~------~~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~~~   72 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVE--K-S------RLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKF   72 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEE--S-S------STTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCC
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEe--c-C------CCCCeEEeeCCcchHHHHhhhhcccchhccccccccchh
Confidence            899999999999999999999999999999  3 2      789999999999999999999999989889999998766


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEc------------ceeEEEEeCeEEEcCCCCC
Q psy7665         196 SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFA------------GEERTVSAQNFIIAVGGRP  263 (296)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~------------g~~~~~~a~~vV~AtG~~p  263 (296)
                      .++|..+.++.......+...+...+++.+|+++.+++.+.+.+++.++            .+.+.+.||+||+|||++|
T Consensus        73 ~~~~~~~~~~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P  152 (259)
T d1onfa1          73 SFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKP  152 (259)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCB
T ss_pred             hhhhhhHHhhhheeeeccccchhhhcccccceEEeeecccccccccccccceeccccccCccceEEEeeeeEEEecCCCC
Confidence            8899999999888888888878888899999999988766666655541            1235689999999999998


Q ss_pred             C--CCCCC--CCc-cceeec--ccCCCCCCcEEE
Q psy7665         264 T--YPDIP--GAR-LLRTLS--LLSGVDPPTLIF  290 (296)
Q Consensus       264 ~--~p~i~--G~~-~~~~~s--~~~~~~~~~~~~  290 (296)
                      .  .+.+|  +++ ..+.+|  ++....+++..+
T Consensus       153 ~~~~~~~~~~~l~~~~i~ts~~~~~~d~~~~t~V  186 (259)
T d1onfa1         153 VGRSPDTENLKLEKLNVETNNNYIVVDENQRTSV  186 (259)
T ss_dssp             CCBCCTTTTSSCTTTTCCBSSSCEEECTTCBCSS
T ss_pred             ccccccccccccccceeeecccccccccCCceeE
Confidence            4  22333  333 445555  444555655443

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=4e-23  Score=169.74  Aligned_cols=147  Identities=40%  Similarity=0.769  Sum_probs=124.5

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhh-cccccCccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEAT-TSDNFGFHM  193 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~g~~~  193 (296)
                      .|||+||||||+|++||.++++.|++|+|+|  + .      .+||+|.+++|+|++.+.......+... ....+++..
T Consensus         2 ~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE--~-~------~~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~   72 (217)
T d1gesa1           2 HYDYIAIGGGSGGIASINRAAMYGQKCALIE--A-K------ELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDT   72 (217)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEE--S-S------CTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEe--c-c------CcCCeEecccccccccchhhHHHHHHHHhhhhhcCccC
Confidence            6899999999999999999999999999999  4 3      7899999999999999999888777664 345567665


Q ss_pred             cc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCCCCCCCCCCCc
Q psy7665         194 KK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAR  272 (296)
Q Consensus       194 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~p~~p~i~G~~  272 (296)
                      .. .+++..+..+.+...+.+...+...+++.+|++............+..++  ..+.++.+++|||++|.+|++|+.+
T Consensus        73 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~~~~~~~~--~~~~~~~~iiatG~~p~ip~ip~~~  150 (217)
T d1gesa1          73 TINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVNG--ETITADHILIATGGRPSHPREPAND  150 (217)
T ss_dssp             EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEETT--EEEEEEEEEECCCEEECCCEEESCT
T ss_pred             CcccccHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccceeeeecCCC--ceeeeeeeeeecCccccCCCCCCcC
Confidence            54 78899999998888888877778888899999987766555555665566  7889999999999999999998765

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=3.5e-21  Score=159.84  Aligned_cols=155  Identities=50%  Similarity=0.914  Sum_probs=131.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      .+|||+||||||+|++||.++++.|++|+|+|+........+..+||+|.+.+|+|++.+.+.............+++..
T Consensus         2 ~dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~~~~~gi~~   81 (235)
T d1h6va1           2 YDFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKL   81 (235)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTTBCC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhHhhhhhcccccc
Confidence            47999999999999999999999999999999433322233446799999999999999999998888888888888877


Q ss_pred             cc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCCCCC
Q psy7665         194 KK--SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYPDI  268 (296)
Q Consensus       194 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~p~i  268 (296)
                      ..  ..++..+..+.....+.+...+...++..+|+++.++..+...+.+.+   .+....+.++.+++++|++|+.+.+
T Consensus        82 ~~~~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~~~~~~~~~v~~~~~~~~~i~a~~ivi~~G~~p~~~~i  161 (235)
T d1h6va1          82 EDTVKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGKFIGPHKIMATNNKGKEKVYSAERFLIATGERPRYLGI  161 (235)
T ss_dssp             CSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCSS
T ss_pred             ccceeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEeeccccceecccccccccccccccceeecCCCceeEEE
Confidence            65  688999999888888888887888888899999999988887777766   4555779999999999999987764

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.83  E-value=4e-20  Score=151.99  Aligned_cols=144  Identities=25%  Similarity=0.433  Sum_probs=117.1

Q ss_pred             CCccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhc---ccc
Q psy7665         112 QTYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATT---SDN  188 (296)
Q Consensus       112 ~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~---~~~  188 (296)
                      ++.+||++||||||+|+++|.++++.|.+|+|+|  +.       .+||+|.+++|+|++.+.......+....   ...
T Consensus         2 ~~~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE--~~-------~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~   72 (220)
T d1lvla1           2 QTIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVE--GQ-------ALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSP   72 (220)
T ss_dssp             CCEECSEEEECCSHHHHHHHHHHHHHTCCEEEEC--SS-------CTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCT
T ss_pred             CccccCEEEECCCHHHHHHHHHHHHCCCcEEEEe--cC-------CCCCcccccccccchhhhhhHHHHhhhhhcccccc
Confidence            3578999999999999999999999999999999  32       78999999999999999887766554443   344


Q ss_pred             cCccccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCCCCCC
Q psy7665         189 FGFHMKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYP  266 (296)
Q Consensus       189 ~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~p~~p  266 (296)
                      +++.... ..++.....+.....+.........+...+++++.++..+.+.+.+..++  ..+.+|.+|+|||++|..|
T Consensus        73 ~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~~~~~~~~~~~~--~~i~a~~viiAtG~~p~~l  149 (220)
T d1lvla1          73 LGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDG--QRIQCEHLLLATGSSSVEL  149 (220)
T ss_dssp             TCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEETT--EEEECSEEEECCCEEECCB
T ss_pred             ceEEeccceehHHHHhhhheeEEeeeccchhhhhccCceEEEEeeecccCcccccccc--eeEeeceeeEcCCCCcccc
Confidence            5555444 67788777777777776666667778888999999988887777776666  7899999999999988664

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.82  E-value=6.2e-20  Score=152.24  Aligned_cols=142  Identities=24%  Similarity=0.445  Sum_probs=116.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC---CcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMN---KKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFH  192 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G---~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~  192 (296)
                      .+|+||||||+|++||.++++.|   ++|+++|  +.       .+||+|.+++|+|++.+.......+.......+|+.
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liE--k~-------~~GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G~~   72 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVID--CD-------GIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFH   72 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEE--SS-------CTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEe--cC-------CCCceeecccccccEEEEeecchhhhhhhhhhcCCc
Confidence            37999999999999999988766   5799999  32       899999999999999999988888888888888765


Q ss_pred             ccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeC------CEEEE---cceeEEEEeCeEEEcCC
Q psy7665         193 MKK---SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDK------HRVKF---AGEERTVSAQNFIIAVG  260 (296)
Q Consensus       193 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------~~v~v---~g~~~~~~a~~vV~AtG  260 (296)
                      ...   .++|..+..+.+.........+...++..+|+++.++..+.+.      +.+.+   ++...++.+|.+|+|||
T Consensus        73 i~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG  152 (233)
T d1xdia1          73 IDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATG  152 (233)
T ss_dssp             ------CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCC
T ss_pred             ccccCceeeeeeeccccceeeeeeecceehhhcccceeEEECcccccccccccccceEEEEecCCceeeeecceeeeecC
Confidence            432   7889988888877777776777888899999999988766433      34555   56667899999999999


Q ss_pred             CCCCCC
Q psy7665         261 GRPTYP  266 (296)
Q Consensus       261 ~~p~~p  266 (296)
                      .+|+.+
T Consensus       153 ~~p~~~  158 (233)
T d1xdia1         153 ASPRIL  158 (233)
T ss_dssp             EEECCC
T ss_pred             cccccc
Confidence            988765

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.81  E-value=3e-19  Score=150.55  Aligned_cols=150  Identities=27%  Similarity=0.339  Sum_probs=112.7

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccC-c
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFG-F  191 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g-~  191 (296)
                      ..+||++||||||+|+.+|..+++.|.+|+++|  +.+      .+||+|.+.+|+|++.+................. +
T Consensus        40 ~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve--~~~------~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~~~  111 (261)
T d1mo9a1          40 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVD--RWP------FLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWF  111 (261)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEE--SSS------SSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTC
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEe--ccC------ccccccccccccchHHHHhhHHhHHHHHHhhhhccc
Confidence            367999999999999999999999999999999  666      8899999999999999988877766655443332 2


Q ss_pred             cccc--cCCHHHHHHHHHHHHHHHHHH-HHHHHHHC-CcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCCCCCCC
Q psy7665         192 HMKK--SFTWKTLVDNVQKYIRNLNNN-YEKELEKN-KIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD  267 (296)
Q Consensus       192 ~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~p~~p~  267 (296)
                      ....  ..++................. ........ ...++.+...+.+.+.+.+++  +++.||.|++|+|.+|+.|+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~~v~~~g--~~i~ad~viiAtG~~P~~~~  189 (261)
T d1mo9a1         112 PDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAAG--KVFKAKNLILAVGAGPGTLD  189 (261)
T ss_dssp             CCCTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEEETT--EEEEBSCEEECCCEECCCCC
T ss_pred             cccccccccHHHHHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEEEeeeccccccc--ceEeeeeeeeccCCCCCcCc
Confidence            2211  456666665555444433322 22233333 444567777888888888888  78999999999999999999


Q ss_pred             CCCCc
Q psy7665         268 IPGAR  272 (296)
Q Consensus       268 i~G~~  272 (296)
                      +|+.+
T Consensus       190 i~~~~  194 (261)
T d1mo9a1         190 VPEQP  194 (261)
T ss_dssp             STCEE
T ss_pred             ccccc
Confidence            99863

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.81  E-value=1.1e-19  Score=149.08  Aligned_cols=142  Identities=31%  Similarity=0.547  Sum_probs=110.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHH-HhhcccccCcc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNE-EATTSDNFGFH  192 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~g~~  192 (296)
                      .+|||+||||||+|+++|.++++.|.+|+|||  +.+      .+||+|.+.+|+|++.+........ .......+++.
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie--~~~------~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~   73 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIE--KRG------ALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVK   73 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEE--CSS------SSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEE--ecC------CCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCee
Confidence            46999999999999999999999999999999  666      8899999999999987776554443 33344555655


Q ss_pred             ccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCC
Q psy7665         193 MKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRP  263 (296)
Q Consensus       193 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p  263 (296)
                      ... .+.+.....+.......+...+...+...+++++.....+..+.....   ......+.+|.||+|||++|
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~VIiATGs~~  148 (221)
T d1dxla1          74 VSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDV  148 (221)
T ss_dssp             ESCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEE
T ss_pred             cccceecHHHHHHHHHHHHHHHhhHHHHhhhcCCeEEEEeccccccccccccccccccccccccceEEEeECCCc
Confidence            544 556666666666666666666677778889999988877777766655   34447889999999999755

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.1e-19  Score=147.50  Aligned_cols=144  Identities=33%  Similarity=0.700  Sum_probs=118.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK  194 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~  194 (296)
                      .|||+||||||+|++||.++++.|++|+|+|  + .      .+||.|.+.+|+|++.+.+.....+.......+.+...
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIE--k-~------~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~   73 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVE--S-H------KLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSC   73 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEE--S-S------CTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEe--c-c------CCCCccccchhhhhhhhhhHHHHHHHHhhhhhcccccc
Confidence            5899999999999999999999999999999  3 2      78999999999999999988887777666666665554


Q ss_pred             c-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCCCCCCC
Q psy7665         195 K-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPD  267 (296)
Q Consensus       195 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~p~~p~  267 (296)
                      . .+++.......+.....+.......++..+|+++.++..+...+.+++......+.++.+++|+|+.|..|.
T Consensus        74 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~~~~~~~~~~~~~~~~~~~~~iatG~~p~vp~  147 (221)
T d3grsa1          74 EGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPH  147 (221)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEECSCSSCEEEETTEEEECSCEEECCCEEECCCC
T ss_pred             ccchhhhhhhhhhheEEeeeccchhhhhccCceEEEEEeeeeccccceeeeeeccccccceeEEecCccccCCC
Confidence            4 778888888877777777777778888999999988877655554444222267899999999999888764

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.79  E-value=6.7e-19  Score=146.39  Aligned_cols=153  Identities=32%  Similarity=0.576  Sum_probs=121.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCC-cEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNK-KVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFH  192 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~  192 (296)
                      .+|||+||||||||++||.++++.|. +|+|+|+.+.......+.+||+|.+.+|+|++.+.+...+.+.......+|+.
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~~~~~~~~iGGtc~~~gcip~K~l~~~a~~~~~~~~~~~~Gi~   81 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWE   81 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEE
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccCCcccccccccccccccchhhhhcccccccccccccccccccc
Confidence            57999999999999999999999985 69999944433333444579999999999999999999999988888888886


Q ss_pred             ccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CcEEEcceEEEEeCCEEEE-------cceeEEEEeCeEEEcCCC
Q psy7665         193 MKK---SFTWKTLVDNVQKYIRNLNNNYEKELEKN-KIDYFNAKAVFVDKHRVKF-------AGEERTVSAQNFIIAVGG  261 (296)
Q Consensus       193 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~v~v-------~g~~~~~~a~~vV~AtG~  261 (296)
                      ...   .++|+.+..+.+.....+...+...+.+. +++++.+.+.+.....+..       .+..+.+.+|.+++++|+
T Consensus        82 ~~~~~v~~d~~~l~~~k~~~v~~~~~~~~~~l~~~~~v~i~~g~a~~~~~~~~~~~~~~~~~~~~~e~i~~~~i~ia~G~  161 (240)
T d1feca1          82 LDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGS  161 (240)
T ss_dssp             CCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCCE
T ss_pred             ccccccccCHHHHHHHhhcEEeccccceeeeeccCCcEEEEEeeccccccccccccccccccccceEEEecceEEEecCC
Confidence            543   67899998888877777766666666554 6888888887766665544       233467899999999999


Q ss_pred             CCCCC
Q psy7665         262 RPTYP  266 (296)
Q Consensus       262 ~p~~p  266 (296)
                      +|...
T Consensus       162 ~p~~~  166 (240)
T d1feca1         162 WPQHL  166 (240)
T ss_dssp             EECCC
T ss_pred             ceeEc
Confidence            87654

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.77  E-value=1.7e-18  Score=142.27  Aligned_cols=151  Identities=28%  Similarity=0.483  Sum_probs=118.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhh-cccccCcc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEAT-TSDNFGFH  192 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~g~~  192 (296)
                      ..|||+||||||||++||.++++.|++|+|||  +....+.+..+||.|.+.+|.|.+.+........... .....++.
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE--~~~~~~~~~~~gg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gi~   79 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIE--KYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGIS   79 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEE--CCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEE
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEe--cccCCCccccccccccccccchhhhhhhhhhhhhhhhhhhhhcccc
Confidence            46999999999999999999999999999999  6666777888999999999999887776555444433 33445665


Q ss_pred             ccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE---cceeEEEEeCeEEEcCCCCCCCC
Q psy7665         193 MKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF---AGEERTVSAQNFIIAVGGRPTYP  266 (296)
Q Consensus       193 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v---~g~~~~~~a~~vV~AtG~~p~~p  266 (296)
                      ... ..++.....+.......+...+...++..+|+++.+............   ......+.++.+++|+|++|..+
T Consensus        80 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atG~~~~~~  157 (229)
T d3lada1          80 TGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVEI  157 (229)
T ss_dssp             CSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECCC
T ss_pred             cCcceeecchhhhhhhHHHHHhhhhHHHHhhcCCeEEEEeEEcccccceeeccccCccceeeecccccccCCcccccc
Confidence            544 678888888777777777777777788889999988876655554444   44456788999999999887664

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.77  E-value=3.6e-18  Score=139.97  Aligned_cols=142  Identities=32%  Similarity=0.562  Sum_probs=116.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      .+|||+||||||+|++||.++++.|++|+|+|  +.       .+||+|.+.+|+|++.+...............+.+..
T Consensus         2 ~~~DviVIG~GpaGl~aA~~aar~G~kV~vIE--k~-------~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (223)
T d1ebda1           2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVE--KG-------NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKA   72 (223)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEE--SS-------CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEEC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCEEEEEe--cC-------CCCcceeccccccccccccccchhhhhhhhhhhcccc
Confidence            46899999999999999999999999999999  32       7899999999999999888877777777666665554


Q ss_pred             cc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE--cceeEEEEeCeEEEcCCCCCC
Q psy7665         194 KK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF--AGEERTVSAQNFIIAVGGRPT  264 (296)
Q Consensus       194 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v--~g~~~~~~a~~vV~AtG~~p~  264 (296)
                      .. .+++..+..+.......+...+...++..+++++.+++.+.......+  ......+.++.+|+|+|..|.
T Consensus        73 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a~f~~~~~~~v~~~~~~~~~~~~~iiIa~g~~p~  146 (223)
T d1ebda1          73 ENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPI  146 (223)
T ss_dssp             CSCEECHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCEEEC
T ss_pred             hhheeeHHHHhhHHHHHHHHHHhhHHHhhhccceeeeccEEEEccCcccceeccccceEEecccEEEEcCCCcc
Confidence            44 677777877777777777777777788889999999988877776655  444478999999999976443

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=1.7e-17  Score=136.82  Aligned_cols=139  Identities=29%  Similarity=0.547  Sum_probs=110.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHh-hcccccCcc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEA-TTSDNFGFH  192 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~g~~  192 (296)
                      ..|||+||||||+|++||.++++.|++|+|||  +.+      .+||+|.+.+|+|++.+.......... .....+|+.
T Consensus         4 ~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie--~~~------~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~Gi~   75 (233)
T d1v59a1           4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVE--KRG------KLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGID   75 (233)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEE--SSS------SSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEE
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEE--ecC------CcceEeEEeeccccccccccchhHHHhhhhHhhcCee
Confidence            57999999999999999999999999999999  666      889999999999999888877766654 457778876


Q ss_pred             ccc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE---cc------eeEEEEeCeEEEcCC
Q psy7665         193 MKK--SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF---AG------EERTVSAQNFIIAVG  260 (296)
Q Consensus       193 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v---~g------~~~~~~a~~vV~AtG  260 (296)
                      ...  ...+.....+.......+........+..+++++.+++.+.+.+.+.+   .+      ....+.++.++++++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~v~~~~G~a~f~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~i~~~  154 (233)
T d1v59a1          76 VNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATG  154 (233)
T ss_dssp             ECSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCC
T ss_pred             EeeceecchhhhhheeeeEEEEeecceeeeeccCCeEEEEEEEEEecCCCcEEEecccccceeeeeeeccCCeEEEecc
Confidence            554  566777777666666666666666777889999999988887777666   11      124567888888555

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.71  E-value=1.1e-16  Score=132.10  Aligned_cols=154  Identities=31%  Similarity=0.580  Sum_probs=117.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCC-cEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNK-KVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFH  192 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~  192 (296)
                      ..|||+||||||||++||.++++.|. +|+|+|+...........+||+|.+.+|+|++.+.+...+.+.......+|..
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~~~~~~~~~lGG~c~n~g~ip~k~l~~~a~~~~~~~~~~~~G~~   81 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKLMVTGAQYMEHLRESAGFGWE   81 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSSSBTTTBCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEE
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecccCccccccccccccccccccchhhhhhHHHHHHHHHHHhcCCc
Confidence            56999999999999999999999985 68899832222222223679999999999999999998888888888888765


Q ss_pred             ccc---cCCHHHHHHHHHHHHHHHHHHHHHHHH-HCCcEEEcceEEEEeCCEEEE-------cceeEEEEeCeEEEcCCC
Q psy7665         193 MKK---SFTWKTLVDNVQKYIRNLNNNYEKELE-KNKIDYFNAKAVFVDKHRVKF-------AGEERTVSAQNFIIAVGG  261 (296)
Q Consensus       193 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~v~v-------~g~~~~~~a~~vV~AtG~  261 (296)
                      ...   ..+|..+..+...............+. ..+++++.+.........+..       ......+.++.+++++|.
T Consensus        82 ~~~~~~~~d~~~l~~~k~~~v~~~~~~~~~~l~~~~gV~vi~g~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~i~~~~  161 (238)
T d1aoga1          82 FDRTTLRAEWKNLIAVKDEAVLNINKSYDEMFRDTEGLEFFLGWGSLESKNVVNVRESADPASAVKERLETEHILLASGS  161 (238)
T ss_dssp             CCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEBSCEEECCCE
T ss_pred             ccCccccccHHHHHHHHHHhhhccccceeeeeecccccEEEEEEeeccccccccccccccccccccccccccceeeeccc
Confidence            543   568988888877777766665555664 568999988877665555544       233467899999999998


Q ss_pred             CCCCCC
Q psy7665         262 RPTYPD  267 (296)
Q Consensus       262 ~p~~p~  267 (296)
                      +|..+.
T Consensus       162 ~~~~~~  167 (238)
T d1aoga1         162 WPHMPN  167 (238)
T ss_dssp             EECCCC
T ss_pred             cccccc
Confidence            876653

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.67  E-value=5.1e-16  Score=127.82  Aligned_cols=142  Identities=32%  Similarity=0.535  Sum_probs=111.5

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcc
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFH  192 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~  192 (296)
                      +.+|||+||||||+|++||.+|++.|++|+|||  +..      .+||+|.+.+|+|++.+...............+|..
T Consensus         4 ~~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE--~~~------~~GG~~~~~g~~~~~~~~~~a~~~~~~~~~~~~G~~   75 (229)
T d1ojta1           4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVE--RYK------TLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIK   75 (229)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEE--SSS------CSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCC
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEe--ccC------CCCCeeeccccchhhhhhhhhhhHHhhhhHhhcCCc
Confidence            467999999999999999999999999999999  555      789999999999999999988888888888888877


Q ss_pred             ccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEE-------------cceeEEEEeCeEEEc
Q psy7665         193 MKK-SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKF-------------AGEERTVSAQNFIIA  258 (296)
Q Consensus       193 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v-------------~g~~~~~~a~~vV~A  258 (296)
                      ... .+.+..+..+.+.....+...........+++++.+............             ........++.++++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vi~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  155 (229)
T d1ojta1          76 YPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIA  155 (229)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEC
T ss_pred             ccCCcccHHHHHHHHHHHHHHHhcchHhHhhcCceEEEEeeeeecCCcccccccccccccccccccccccceecceEEEE
Confidence            665 777888877777766666666666777889998877665433322111             122345677888889


Q ss_pred             CCCC
Q psy7665         259 VGGR  262 (296)
Q Consensus       259 tG~~  262 (296)
                      .|.+
T Consensus       156 ~~~~  159 (229)
T d1ojta1         156 AGSR  159 (229)
T ss_dssp             CCEE
T ss_pred             eccc
Confidence            8864

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.56  E-value=9.7e-16  Score=120.66  Aligned_cols=105  Identities=23%  Similarity=0.278  Sum_probs=72.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      ..++|+||||||||++||.+|+++|++|+|||  +.+      .+||.......+|.                       
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E--~~~------~~GG~l~~~~~~p~-----------------------   90 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFD--AHS------EIGGQFNIAKQIPG-----------------------   90 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEE--SSS------SSCTTHHHHTTSTT-----------------------
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhccceEEEe--ccC------ccCceEEEEEeCcc-----------------------
Confidence            45699999999999999999999999999999  777      77885432222221                       


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEeCCEEEEcceeEEEEeCeEEEcCCCCCCCCCCCCCc
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVDKHRVKFAGEERTVSAQNFIIAVGGRPTYPDIPGAR  272 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~v~v~g~~~~~~a~~vV~AtG~~p~~p~i~G~~  272 (296)
                        ...+.++.+           .+...+++.+|+++.++.       |+.+   ....+|.||+|||+.|+.+.+||.+
T Consensus        91 --~~~~~~~~~-----------~~~~~~~~~gV~i~l~~~-------Vt~~---~~~~~d~vilAtG~~~~~~~~pg~~  146 (179)
T d1ps9a3          91 --KEEFYETLR-----------YYRRMIEVTGVTLKLNHT-------VTAD---QLQAFDETILASGIPNRALAQPLID  146 (179)
T ss_dssp             --CTTHHHHHH-----------HHHHHHHHHTCEEEESCC-------CCSS---SSCCSSEEEECCCEECCTTHHHHHT
T ss_pred             --cchHHHHHH-----------HHHHhhhcCCeEEEeCCE-------Eccc---ccccceeEEEeecCCCcccccchhc
Confidence              112222222           233445556899876442       2111   2346899999999999888888765

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.50  E-value=3.2e-14  Score=118.67  Aligned_cols=143  Identities=17%  Similarity=0.233  Sum_probs=79.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCccccc--CCee--eccCCCchhH--------H--HHhhhh
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGL--GGTC--VNVGCIPKKL--------F--HRASLL  179 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~--GG~~--~~~~~~p~~~--------~--~~~~~~  179 (296)
                      ..+||+||||||||++||++|+++|++|+|+|  +.+.+|.+...  ||.|  .+....|...        .  ......
T Consensus         3 ~~~DViIIGaG~aGl~aA~~la~~G~~V~vlE--k~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~   80 (253)
T d2gqfa1           3 QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFD--NGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTN   80 (253)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEC--SSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCH
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEe--cCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcc
Confidence            45799999999999999999999999999999  77877776554  3444  2222222211        0  011111


Q ss_pred             HHHhhcccccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEE-E--E--eCCE--EEE--cceeEEE
Q psy7665         180 NEEATTSDNFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAV-F--V--DKHR--VKF--AGEERTV  250 (296)
Q Consensus       180 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~--~--~~~~--v~v--~g~~~~~  250 (296)
                      .....+...++............   .....+.+...+...+++.+|+++.++.. .  .  +.+.  +.+  ++  .++
T Consensus        81 ~~~~~~~~~~g~~~~~~~~~~~~---~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~--~~~  155 (253)
T d2gqfa1          81 WDFISLVAEQGITYHEKELGQLF---CDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNS--TQW  155 (253)
T ss_dssp             HHHHHHHHHTTCCEEECSTTEEE---ETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETT--EEE
T ss_pred             cchhhhhhhcCcceeeecCCccc---cccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCC--EEE
Confidence            12222222333222110000000   00011223344556667779999876432 1  1  1221  223  55  789


Q ss_pred             EeCeEEEcCCCCC
Q psy7665         251 SAQNFIIAVGGRP  263 (296)
Q Consensus       251 ~a~~vV~AtG~~p  263 (296)
                      +||+||+|||+.+
T Consensus       156 ~a~~VIiAtGG~S  168 (253)
T d2gqfa1         156 QCKNLIVATGGLS  168 (253)
T ss_dssp             EESEEEECCCCSS
T ss_pred             EeCEEEEcCCccc
Confidence            9999999999764

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.50  E-value=4.4e-15  Score=126.93  Aligned_cols=135  Identities=14%  Similarity=0.203  Sum_probs=82.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccC---C---CchhHHHHhhhhHHHhhccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVG---C---IPKKLFHRASLLNEEATTSD  187 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~---~---~p~~~~~~~~~~~~~~~~~~  187 (296)
                      ..+||+|||||++|+.+|.+|+++|.+|+|||  +.+      .+||+|....   +   .|....... ......   .
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~E--k~~------~iGGtW~~n~ypg~~~d~~~~~~~~s-~~~~~~---~   73 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIE--TAG------DVGGVWYWNRYPGARCDIESIEYCYS-FSEEVL---Q   73 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEEC--SSS------SSCTHHHHCCCTTCBCSSCTTTSSCC-SCHHHH---H
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEE--cCC------CcccccccCCCCCceecccccccccc-cccccc---C
Confidence            57899999999999999999999999999999  777      8999985321   1   111100000 000000   0


Q ss_pred             ccCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcc-eE---EEE---eCCEEEE-cceeEEEEeCeEEEcC
Q psy7665         188 NFGFHMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNA-KA---VFV---DKHRVKF-AGEERTVSAQNFIIAV  259 (296)
Q Consensus       188 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~---~~~---~~~~v~v-~g~~~~~~a~~vV~At  259 (296)
                      .+.++. ..+..+++..+++.+++++..      ..   .+..+ ++   .+.   ..|.|++ ++  .++.||+||+||
T Consensus        74 ~~~~~~-~~p~~~e~~~Yl~~~a~~~~L------~~---~I~f~t~V~~~~~de~~~~W~V~~~~~--~~~~~~~~i~at  141 (298)
T d1w4xa1          74 EWNWTE-RYASQPEILRYINFVADKFDL------RS---GITFHTTVTAAAFDEATNTWTVDTNHG--DRIRARYLIMAS  141 (298)
T ss_dssp             HCCCCB-SSCBHHHHHHHHHHHHHHTTG------GG---GEECSCCEEEEEEETTTTEEEEEETTC--CEEEEEEEEECC
T ss_pred             CCCCcc-ccCccchHHHHHHHHHHHcCC------cc---cccCCcEEEEEEEecCCCceeeccccc--cccccceEEEee
Confidence            011110 034566777777777666531      00   12221 11   222   2356776 55  578999999999


Q ss_pred             C--CCCCCCCCCCCc
Q psy7665         260 G--GRPTYPDIPGAR  272 (296)
Q Consensus       260 G--~~p~~p~i~G~~  272 (296)
                      |  +.|..|.+|+.+
T Consensus       142 G~ls~~~~p~~~~~~  156 (298)
T d1w4xa1         142 GQLSDALTGALFKID  156 (298)
T ss_dssp             CSCCCCTTHHHHTSE
T ss_pred             cccccccCCcccccc
Confidence            9  578888777765

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.49  E-value=1.7e-14  Score=119.85  Aligned_cols=40  Identities=40%  Similarity=0.598  Sum_probs=35.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTV  155 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~  155 (296)
                      ++|||+||||||+|+.||+.|+++|++|+|+|  +.+.+|.+
T Consensus         1 M~yDViIIGaG~aGl~aA~~la~~G~~V~liE--k~~~~g~~   40 (251)
T d2i0za1           1 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLD--KGNKLGRK   40 (251)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEC--SSSSSCHH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEe--CCCCCCcc
Confidence            46899999999999999999999999999999  66644443

>d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.45  E-value=7.5e-14  Score=103.03  Aligned_cols=63  Identities=27%  Similarity=0.302  Sum_probs=59.4

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHHh
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWIK   64 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~~   64 (296)
                      .+|+++|++|++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.++..++.
T Consensus        53 ~~Kli~d~~~~~ilGa~ivG~~A~elI~~~alai~~~~t~~~l~~~i~~hPT~sE~~~~Aa~~  115 (123)
T d1v59a3          53 FVKILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSEAFKEANMA  115 (123)
T ss_dssp             EEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCTTHHHHHHHHH
T ss_pred             EEEEEEECCCCEEEEEEEEchHHHHHHHHHHHHHHcCCcHHHHHhcccCCCcHHHHHHHHHHH
Confidence            468999999999999999999999999999999999999999999999999999999877653

>d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.45  E-value=8.1e-14  Score=102.01  Aligned_cols=62  Identities=11%  Similarity=0.082  Sum_probs=58.9

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI   63 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~   63 (296)
                      .+|+++|++|++|||+|++|++|+|+|+.++++|+++.+.++|.+++++|||++|.++..++
T Consensus        53 ~vKlv~d~~~~~ilGa~ivG~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~aa~  114 (118)
T d1xdia2          53 FVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAVYPSLSGSITEAAR  114 (118)
T ss_dssp             EEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSBCCSSSTHHHHHHHHH
T ss_pred             heEEEEecCCCceEEEEEEcCcHHHHHHHHHHHHHcCCCHHHHhhCCCCCCCHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999987765

>d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.45  E-value=7.5e-14  Score=103.64  Aligned_cols=64  Identities=22%  Similarity=0.271  Sum_probs=60.3

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHHhh
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWIKG   65 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~~~   65 (296)
                      .+|+++|++||+|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.++..+..-
T Consensus        53 ~~Kli~d~~~g~iLGa~ivG~~A~ElI~~~~lai~~~~t~~~l~~~i~~hPT~sE~l~~Aa~~~  116 (128)
T d1ojta3          53 FTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIHPHPTLGESIGMAAEVA  116 (128)
T ss_dssp             EEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSSSTTHHHHHHHHH
T ss_pred             eEEEEEeCCCCeEEEEEEEhhhHHHHHHHHHHHHHcCCCHHHHhhCcCcCCCHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999999999999999999999999998887643

>d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.44  E-value=9.4e-14  Score=102.67  Aligned_cols=63  Identities=16%  Similarity=0.283  Sum_probs=59.6

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHHh
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWIK   64 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~~   64 (296)
                      .+|+|+|++|++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.++..++.
T Consensus        53 ~vKlv~d~~t~~ILGa~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~Aa~~  115 (124)
T d3lada3          53 FVKVIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSEALHEAALA  115 (124)
T ss_dssp             EEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSCCCSSCSHHHHHHHHHH
T ss_pred             EEEEEEECCCCEEEEEEEEcccHHHHHHHHHHHHHcCCCHHHHHhCCccCCCHHHHHHHHHHH
Confidence            368999999999999999999999999999999999999999999999999999999887763

>d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=8.3e-14  Score=101.52  Aligned_cols=56  Identities=29%  Similarity=0.532  Sum_probs=54.3

Q ss_pred             cceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHH
Q psy7665           3 LPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI   58 (296)
Q Consensus         3 ~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l   58 (296)
                      +|+++|+++++|||+|++|++|+|+|+.++++|+++.+.++|.+++++|||++|.+
T Consensus        56 ~k~i~~~~~~~ilG~~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l  111 (115)
T d3grsa3          56 MKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEEL  111 (115)
T ss_dssp             EEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGG
T ss_pred             EEEEEecCCceEEEEEEeccCHHHHHHHHHHHHHcCCCHHHHhhCccCCCCHHHHH
Confidence            68999999999999999999999999999999999999999999999999999976

>d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.42  E-value=1.7e-13  Score=101.11  Aligned_cols=63  Identities=24%  Similarity=0.329  Sum_probs=59.4

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHHh
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWIK   64 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~~   64 (296)
                      .+|+++|+++++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.++..++.
T Consensus        53 ~~Klv~d~~~~~ilG~~ivG~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~aa~~  115 (123)
T d1dxla3          53 LVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAIKEAAMA  115 (123)
T ss_dssp             EEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTTHHHHHHHHH
T ss_pred             eEEEEEECCCCEEEEEEEehhhHHHHHHHHHHHHHcCCcHHHHhhCCCCCCCHHHHHHHHHHH
Confidence            368999999999999999999999999999999999999999999999999999999877763

>d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.42  E-value=1.5e-13  Score=100.09  Aligned_cols=62  Identities=24%  Similarity=0.215  Sum_probs=58.7

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI   63 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~   63 (296)
                      .+|+++|+++++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.+...+.
T Consensus        51 ~vKli~~~~~~~iLG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~Aa~  112 (115)
T d1ebda3          51 FLKLVVRKEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEIAMEAAE  112 (115)
T ss_dssp             EEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTSSTHHHHHHHH
T ss_pred             EEEEEEeCCcceEEEEEEEcCCHHHHHHHHHHHHHcCCCHHHHhhCCCCCCCHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999887665

>d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.42  E-value=1.8e-13  Score=100.93  Aligned_cols=62  Identities=18%  Similarity=0.253  Sum_probs=58.8

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWI   63 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~   63 (296)
                      .+|+++|++|++|||+|++|++|+|+|+.++++|+++.+.++|.+++++|||++|.+...++
T Consensus        53 ~vklv~d~~t~~ILG~~ivG~~A~elI~~~~lai~~~~t~~~l~~~i~~hPT~sE~~~~aa~  114 (123)
T d1lvla3          53 FVRVVARRDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGEAVQEAAL  114 (123)
T ss_dssp             EEEEEEETTTCBEEEEEEEETTGGGHHHHHHHHHHHTCBHHHHHTSCCCTTCTTHHHHHHHH
T ss_pred             heeeeeecccccceEEEEEeCchhhHHHHHHHHHHcCCCHHHHhcCCCCCCCHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999987665

>d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=1.3e-13  Score=100.52  Aligned_cols=56  Identities=29%  Similarity=0.441  Sum_probs=54.3

Q ss_pred             cceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHH
Q psy7665           3 LPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI   58 (296)
Q Consensus         3 ~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l   58 (296)
                      +|+++|+++++|||+|++|++|+|+|+.++++|+++.+.++|.+++++|||++|.+
T Consensus        56 ~k~v~~~~~~~IlGa~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l  111 (115)
T d1gesa3          56 MKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEF  111 (115)
T ss_dssp             EEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGG
T ss_pred             EEEEEecCCcEEEEEEEECCCHHHHHHHHHHHHHcCCcHHHHhcCcccCCcHHHHH
Confidence            68999999999999999999999999999999999999999999999999999975

>d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.40  E-value=1.6e-13  Score=100.65  Aligned_cols=57  Identities=37%  Similarity=0.450  Sum_probs=54.8

Q ss_pred             cceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHH
Q psy7665           3 LPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAIS   59 (296)
Q Consensus         3 ~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~   59 (296)
                      +|+++|+++++|||+|++|++|+|+||.++++|+++.+.++|.+++++|||++|.+-
T Consensus        60 ~kli~~~~~~~IlGa~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~  116 (119)
T d1onfa3          60 LKLVCVGKDELIKGLHIIGLNADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEFL  116 (119)
T ss_dssp             EEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSTTHHH
T ss_pred             EEEEEecCCCcEEEEEEeCCCHHHHHHHHHHHHHcCCcHHHHhhCcccCCCHHHHHH
Confidence            688999999999999999999999999999999999999999999999999999863

>d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.38  E-value=2.2e-13  Score=101.06  Aligned_cols=56  Identities=27%  Similarity=0.413  Sum_probs=53.9

Q ss_pred             cceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHH
Q psy7665           3 LPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI   58 (296)
Q Consensus         3 ~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l   58 (296)
                      .|+|+|++|++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.+
T Consensus        55 ~klv~~~~~g~iLGa~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l  110 (128)
T d1feca3          55 VRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEEL  110 (128)
T ss_dssp             EEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGG
T ss_pred             EEEeecCCCCceeEEEEECCCHHHHHHHHHHHHHcCCcHHHHhcCcCCCCcHHHHH
Confidence            57888999999999999999999999999999999999999999999999999976

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.37  E-value=1.3e-12  Score=113.23  Aligned_cols=40  Identities=28%  Similarity=0.527  Sum_probs=35.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--CcEEEEeccCCCCCCcccccCCeeec
Q psy7665         117 DLCVIGGGSGGISAAKEAASMN--KKVALFDFVTPSQHGTVWGLGGTCVN  164 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE~~~~~~~g~~~~~GG~~~~  164 (296)
                      +|+|||||++|++||.+|++.|  .+|+|+|  +.+      .+||+|.+
T Consensus         6 rVaIIGaG~sGl~~A~~L~~~~~~~~v~vfE--k~~------~iGG~W~~   47 (335)
T d2gv8a1           6 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFE--RRG------SPGGVWNY   47 (335)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCSEEEEEC--SSS------SSSTTCSC
T ss_pred             eEEEECcCHHHHHHHHHHHHhCCCCCEEEEE--CCC------CCCCcccc
Confidence            7999999999999999998876  5999999  777      88888854

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.36  E-value=1.4e-12  Score=105.74  Aligned_cols=31  Identities=26%  Similarity=0.419  Sum_probs=30.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .|||||||||||||+||+++++.|.+|+||+
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit   32 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLT   32 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEE
Confidence            4899999999999999999999999999999

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.34  E-value=3.5e-12  Score=108.94  Aligned_cols=35  Identities=34%  Similarity=0.495  Sum_probs=32.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      ..|||+|||||++||++|++|+++|.+|+|||  +.+
T Consensus        15 e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvE--K~~   49 (308)
T d1y0pa2          15 DTVDVVVVGSGGAGFSAAISATDSGAKVILIE--KEP   49 (308)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEC--SSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEe--cCC
Confidence            56899999999999999999999999999999  554

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.27  E-value=1.4e-11  Score=105.87  Aligned_cols=35  Identities=31%  Similarity=0.509  Sum_probs=32.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      ..+||+|||+|++||+||++|+++|++|+|+|  +.+
T Consensus        22 et~DVvVIG~G~aGl~aA~~la~~G~~V~llE--k~~   56 (322)
T d1d4ca2          22 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLE--KEP   56 (322)
T ss_dssp             EECSEEEECSSHHHHHHHHHHHTTTCCEEEEC--SSS
T ss_pred             CcceEEEECcCHHHHHHHHHHHHCCCcEEEEe--CCC
Confidence            45799999999999999999999999999999  554

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.27  E-value=1.5e-11  Score=90.19  Aligned_cols=90  Identities=19%  Similarity=0.271  Sum_probs=65.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK  194 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~  194 (296)
                      ..+++|||||++|+++|..|+++|.+|+++|  +.+      .+-.         .                        
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~--~~~------~~l~---------~------------------------   68 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVE--TQP------RLMS---------R------------------------   68 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEE--SSS------STTT---------T------------------------
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEe--ecc------cccc---------c------------------------
Confidence            3589999999999999999999999999999  444      1100         0                        


Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceE-EEEeCCEEEE-cceeEEEEeCeEEEcCC
Q psy7665         195 KSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA-VFVDKHRVKF-AGEERTVSAQNFIIAVG  260 (296)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~v~v-~g~~~~~~a~~vV~AtG  260 (296)
                       .++            ..+...+.+.++++||+++.+.. .......+++ +|  .++.||.||+|+|
T Consensus        69 -~~~------------~~~~~~~~~~l~~~GV~i~~~~~v~~~~~~~v~l~dg--~~i~~D~vi~a~G  121 (121)
T d1d7ya2          69 -AAP------------ATLADFVARYHAAQGVDLRFERSVTGSVDGVVLLDDG--TRIAADMVVVGIG  121 (121)
T ss_dssp             -TSC------------HHHHHHHHHHHHTTTCEEEESCCEEEEETTEEEETTS--CEEECSEEEECSC
T ss_pred             -cCC------------HHHHHHHHHHHHHCCcEEEeCCEEEEEeCCEEEECCC--CEEECCEEEEeeC
Confidence             000            12233345667888999987654 3355666777 66  6799999999998

>d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=2.6e-12  Score=95.85  Aligned_cols=55  Identities=36%  Similarity=0.606  Sum_probs=51.0

Q ss_pred             ceeec-CCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHH
Q psy7665           4 PKLGG-SEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAI   58 (296)
Q Consensus         4 ~~~~~-~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l   58 (296)
                      +++++ +++++|||+|++|++|+|+|+.++++|+++++.++|.+++++|||++|.+
T Consensus        58 ~~v~~~~~~~~ILGa~ivg~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~  113 (133)
T d1h6va3          58 KVICNLKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKQQLDSTIGIHPVCAEIF  113 (133)
T ss_dssp             EEEEEGGGTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCTTCGGGGG
T ss_pred             EEEEEecCcccEEEEEEeCCCHHHHHHHHHHHHHcCCCHHHHhhccccCCCHHHHH
Confidence            45554 57899999999999999999999999999999999999999999999976

>d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.26  E-value=3.7e-12  Score=96.02  Aligned_cols=58  Identities=12%  Similarity=0.062  Sum_probs=54.1

Q ss_pred             CcceeecCCCCeEEEEEEEcCChhHHHHHHHHHHHcCCCHHHHccC--cCCCCChHHHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNNAGEITQGYALGVMLGAYKQDFDAL--IGIHPTCAEAIS   59 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~--i~~~pt~~e~l~   59 (296)
                      .+|+|+|++|++|||+|++|++|+|+|+.++++|+++.+.++|.++  +++|||..|.+.
T Consensus        69 ~vKlv~d~~t~~IlGa~ivG~~A~ElI~~~~~ai~~~~t~~dl~~~~~i~~hPT~~~~l~  128 (140)
T d1mo9a3          69 FQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNPTHFIQLS  128 (140)
T ss_dssp             EEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSCCHHHHH
T ss_pred             eEEEEEecCCCcEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHHhcCCCCCCCChHHHHH
Confidence            3689999999999999999999999999999999999999999886  789999999873

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.25  E-value=1e-11  Score=106.59  Aligned_cols=34  Identities=29%  Similarity=0.405  Sum_probs=31.7

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      +..+||||||+|++||+||++|+++|.+|+|+||
T Consensus        17 ~e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK   50 (317)
T d1qo8a2          17 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDK   50 (317)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECS
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCcEEEEeC
Confidence            3568999999999999999999999999999993

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.25  E-value=2.8e-11  Score=88.03  Aligned_cols=90  Identities=18%  Similarity=0.267  Sum_probs=63.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKK  195 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~  195 (296)
                      .+++|||||+.|+++|..|++.|.+|+++|  +.+      .+..                                   
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve--~~~------~il~-----------------------------------   58 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVE--ARE------RILP-----------------------------------   58 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEEC--SSS------SSST-----------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEe--eec------cccc-----------------------------------
Confidence            489999999999999999999999999999  544      1110                                   


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceE-EEEeCCEEEE---cceeEEEEeCeEEEcCC
Q psy7665         196 SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA-VFVDKHRVKF---AGEERTVSAQNFIIAVG  260 (296)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~v~v---~g~~~~~~a~~vV~AtG  260 (296)
                      .++            .++...+.+.+++.|++++.++. ....+....+   +++..++.||.||+|+|
T Consensus        59 ~~d------------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          59 TYD------------SELTAPVAESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             TSC------------HHHHHHHHHHHHHHTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             ccc------------chhHHHHHHHHHhhcceEEcCcEEEEEcCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence            111            11233345666777999998754 3344444333   44446799999999998

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.24  E-value=1.7e-10  Score=96.76  Aligned_cols=32  Identities=34%  Similarity=0.526  Sum_probs=30.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..|||+|||||.+|+++|++|+++|++|+|+|
T Consensus         2 ~~yDvvIIGaGi~Gls~A~~La~~G~~V~viE   33 (281)
T d2gf3a1           2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLVD   33 (281)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEe
Confidence            46999999999999999999999999999999

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.22  E-value=1.8e-10  Score=99.11  Aligned_cols=33  Identities=27%  Similarity=0.376  Sum_probs=31.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ..|||||||||++||+||++|+++|.+|+|+|+
T Consensus         4 ~~~DVvVIG~G~AGl~AAl~aa~~G~~V~liEK   36 (336)
T d2bs2a2           4 QYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSL   36 (336)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTTTCCEEEECS
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCCCEEEEec
Confidence            458999999999999999999999999999994

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.21  E-value=1.8e-10  Score=84.09  Aligned_cols=90  Identities=24%  Similarity=0.344  Sum_probs=63.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKK  195 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~  195 (296)
                      .+++|||||+.||++|..+++.|.+|+++|  +.+++-      .                                   
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~--~~~~ll------~-----------------------------------   59 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLE--AMDKFL------P-----------------------------------   59 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEE--SSSSSS------T-----------------------------------
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEE--eecccC------C-----------------------------------
Confidence            489999999999999999999999999999  444110      0                                   


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEE---EeCCE--EEE--cceeEEEEeCeEEEcCC
Q psy7665         196 SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVF---VDKHR--VKF--AGEERTVSAQNFIIAVG  260 (296)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~--v~v--~g~~~~~~a~~vV~AtG  260 (296)
                      ..+            ..+...+.+.+++.|++++.+....   ..+..  +++  .++..++.||.|++|+|
T Consensus        60 ~~d------------~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          60 AVD------------EQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             TSC------------HHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             ccc------------chhHHHHHHHHHhcCceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence            001            1223345566788899998875422   23343  444  34446799999999998

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=2.8e-11  Score=95.92  Aligned_cols=112  Identities=21%  Similarity=0.245  Sum_probs=68.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      .++||+||||||+||+||.+|++.|.+|+|||  +.       ..||.+.....+.                 .+.+++.
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie--~~-------~~~g~~~~~~~i~-----------------~~~~~~~   57 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLIT--GM-------EKGGQLTTTTEVE-----------------NWPGDPN   57 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEEC--CS-------STTGGGGGCSBCC-----------------CSTTCCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEE--ee-------cccccccccchhh-----------------hhhcccc
Confidence            46799999999999999999999999999999  43       4466554432221                 1111111


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEe--CCEEEEcceeEEEEeCeEEEcCCCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVD--KHRVKFAGEERTVSAQNFIIAVGGRPT  264 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~v~v~g~~~~~~a~~vV~AtG~~p~  264 (296)
                        .....++..           .....+.+.++++..+++....  .....+.+....+.++.+++|+|..|+
T Consensus        58 --~~~~~~~~~-----------~~~~~~~~~~~~~~~~~V~~~~~~~~~~~v~~~~~~~~~~~viva~G~~~~  117 (190)
T d1trba1          58 --DLTGPLLME-----------RMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASAR  117 (190)
T ss_dssp             --SCBHHHHHH-----------HHHHHHHHTTCEEECCCEEEEECSSSSEEEEESSCEEEEEEEEECCCEEEC
T ss_pred             --ccchHHHHH-----------HHHHHHHhcCcEEecceeEEEecCCCcEEEEEeeeeEeeeeeeeecceeee
Confidence              112222222           2233455567887766543322  222233222257889999999997554

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.21  E-value=7.8e-11  Score=86.53  Aligned_cols=88  Identities=22%  Similarity=0.271  Sum_probs=64.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKK  195 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~  195 (296)
                      .+++|||||++|+++|..|+++|.+|+++|  +.+      .+.+                              +    
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~--~~~------~l~~------------------------------~----   70 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIH--RGA------MFLG------------------------------L----   70 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEEC--SSS------CCTT------------------------------C----
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEe--ccc------cccC------------------------------C----
Confidence            489999999999999999999999999999  444      1100                              0    


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceE-EEEeCCEEEEcceeEEEEeCeEEEcCCC
Q psy7665         196 SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA-VFVDKHRVKFAGEERTVSAQNFIIAVGG  261 (296)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~v~v~g~~~~~~a~~vV~AtG~  261 (296)
                        +            ..+...+...+++.|++++.+.. .......+..++  ..+.+|.||+|+|.
T Consensus        71 --d------------~~~~~~~~~~l~~~GV~~~~~~~v~~~~~~~v~~~~--~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          71 --D------------EELSNMIKDMLEETGVKFFLNSELLEANEEGVLTNS--GFIEGKVKICAIGI  121 (122)
T ss_dssp             --C------------HHHHHHHHHHHHHTTEEEECSCCEEEECSSEEEETT--EEEECSCEEEECCE
T ss_pred             --C------------HHHHHHHHHHHHHCCcEEEeCCEEEEEeCCEEEeCC--CEEECCEEEEEEEe
Confidence              0            11233345667888999988753 335556665577  67999999999993

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.21  E-value=9.6e-13  Score=108.20  Aligned_cols=47  Identities=26%  Similarity=0.389  Sum_probs=40.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCI  168 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~  168 (296)
                      ...+|+||||||+|+++|.+|+++|++|+|+|  +.+      .+||.|.....+
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E--~~~------~~GG~~~~~~~~   94 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTD--TAE------KIGGHLNQVAAL   94 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEEC--SSS------STTTTHHHHTTS
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccceeeEe--ecc------ccCCcccccccc
Confidence            55699999999999999999999999999999  666      889977554443

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=1.2e-10  Score=84.74  Aligned_cols=88  Identities=17%  Similarity=0.258  Sum_probs=61.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKK  195 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~  195 (296)
                      .+|+|||||++|+++|..|++.|.+|+|+|  +.+      .+..                                   
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve--~~~------~~l~-----------------------------------   58 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFE--MFD------APLP-----------------------------------   58 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEC--SSS------SSST-----------------------------------
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEe--ecc------hhhh-----------------------------------
Confidence            379999999999999999999999999999  444      1110                                   


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEE-EE--e-CCEE--EE-cceeEEEEeCeEEEcCC
Q psy7665         196 SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAV-FV--D-KHRV--KF-AGEERTVSAQNFIIAVG  260 (296)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~--~-~~~v--~v-~g~~~~~~a~~vV~AtG  260 (296)
                      .++            ..+...+.+.+++.|++++.++.. .+  + ...+  +. +|  .++.+|.||+|+|
T Consensus        59 ~~d------------~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g--~~~~~D~vi~a~G  116 (116)
T d1gesa2          59 SFD------------PMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDG--RSETVDCLIWAIG  116 (116)
T ss_dssp             TSC------------HHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTS--CEEEESEEEECSC
T ss_pred             hcc------------hhhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEEEEEECCC--CEEEcCEEEEecC
Confidence            111            112334456667779999887532 22  2 2233  34 55  6789999999998

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=5.3e-11  Score=101.84  Aligned_cols=148  Identities=26%  Similarity=0.352  Sum_probs=77.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC--CCcEEEEeccCCCCCCcccccCCeeecc--C-----------------CCchhH
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASM--NKKVALFDFVTPSQHGTVWGLGGTCVNV--G-----------------CIPKKL  172 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~~~~~~~g~~~~~GG~~~~~--~-----------------~~p~~~  172 (296)
                      .++||+|||+|+|||.||++++++  |.+|+|+||.....-++.+.-||.+...  .                 |.|...
T Consensus         4 ~~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~s~~A~GGi~a~~~~~Ds~e~~~~dt~~~g~~~~d~~~v   83 (311)
T d1kf6a2           4 FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVV   83 (311)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHH
T ss_pred             eecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCcHHHHhhhHhhhcCCCCCHHHHHHHHHhhccCccHHHHH
Confidence            568999999999999999999986  6789999943222222233335543211  1                 122222


Q ss_pred             HHHhhhhHHHhhcccccCccccc----cCC--------HHHHHHHHHHH-HHHHHHHHHHHHHHCCcEEEcceEE---EE
Q psy7665         173 FHRASLLNEEATTSDNFGFHMKK----SFT--------WKTLVDNVQKY-IRNLNNNYEKELEKNKIDYFNAKAV---FV  236 (296)
Q Consensus       173 ~~~~~~~~~~~~~~~~~g~~~~~----~~~--------~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~---~~  236 (296)
                      ..........+.++..++.++..    ...        ........... ...+...+....+..+|+++.....   ..
T Consensus        84 ~~~~~~~~~~i~~L~~~g~~f~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~~~~~~l~~~~~~~~v~i~~~~~v~~Ll~  163 (311)
T d1kf6a2          84 DYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILV  163 (311)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEE
T ss_pred             HHHHHhhhHhHHhhhhcccccccccccccccccccccccccccccccchhhHHHHhHHHHHHccCcceeEeeeEeeeeEe
Confidence            22333344445555556554442    000        00000000000 0111112233344457998876432   23


Q ss_pred             eCCEEE---E----cceeEEEEeCeEEEcCCC
Q psy7665         237 DKHRVK---F----AGEERTVSAQNFIIAVGG  261 (296)
Q Consensus       237 ~~~~v~---v----~g~~~~~~a~~vV~AtG~  261 (296)
                      ++..+.   .    +|+...+.|+.||+|||.
T Consensus       164 d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG  195 (311)
T d1kf6a2         164 DDGHVRGLVAMNMMEGTLVQIRANAVVMATGG  195 (311)
T ss_dssp             ETTEEEEEEEEETTTTEEEEEECSCEEECCCC
T ss_pred             cCCcceeEEEEEcCCCcEEEEECCEEEEcCCC
Confidence            444432   1    465667899999999995

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.15  E-value=1.8e-10  Score=96.19  Aligned_cols=33  Identities=42%  Similarity=0.525  Sum_probs=31.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ..|||+|||||.+|+++|++|+++|++|+|+|+
T Consensus         3 ~~~DvvIIGaGi~Gls~A~~La~~G~~V~vlE~   35 (276)
T d1ryia1           3 RHYEAVVIGGGIIGSAIAYYLAKENKNTALFES   35 (276)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCcEEEEeC
Confidence            458999999999999999999999999999993

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.12  E-value=9.8e-10  Score=79.87  Aligned_cols=88  Identities=23%  Similarity=0.382  Sum_probs=61.5

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKK  195 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~  195 (296)
                      .+++|||||+.|+++|..+++.|.+|+|+|  +.+      .+..                                   
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve--~~~------~il~-----------------------------------   59 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILE--GAG------EILS-----------------------------------   59 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEE--SSS------SSST-----------------------------------
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEE--ecc------eecc-----------------------------------
Confidence            489999999999999999999999999999  554      1111                                   


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEE---EeCCEEEE----cceeEEEEeCeEEEc
Q psy7665         196 SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVF---VDKHRVKF----AGEERTVSAQNFIIA  258 (296)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~v~v----~g~~~~~~a~~vV~A  258 (296)
                      .++            ..+...+.+.+++.|++++.+....   .....+.+    +|+.+++.||.|++.
T Consensus        60 ~~d------------~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          60 GFE------------KQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             TSC------------HHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred             ccc------------chhHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence            111            1123334566788899998875422   23334333    556678999999974

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=1.1e-10  Score=100.53  Aligned_cols=33  Identities=30%  Similarity=0.521  Sum_probs=31.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      .+|||+|||+|+|||.||++++++|.+|+|+||
T Consensus         6 ~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK   38 (330)
T d1neka2           6 REFDAVVIGAGGAGMRAALQISQSGQTCALLSK   38 (330)
T ss_dssp             EEESCEEECCSHHHHHHHHHHHHTTCCCEEECS
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeC
Confidence            578999999999999999999999999999993

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.09  E-value=1.9e-09  Score=91.27  Aligned_cols=30  Identities=23%  Similarity=0.406  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC-cEEEEec
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNK-KVALFDF  146 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE~  146 (296)
                      ||+|||||.+|+++|++|+++|. +|+|+|+
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~   33 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQ   33 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECS
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeC
Confidence            89999999999999999999995 7999994

>d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CO dehydrogenase flavoprotein C-domain-like
superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.07  E-value=5.7e-11  Score=87.67  Aligned_cols=56  Identities=11%  Similarity=0.075  Sum_probs=51.9

Q ss_pred             CcceeecCCCCeEEEEEEEcCC-hhHHHHHHHHHHHcCCCHHHHccCcCC-CCChHHH
Q psy7665           2 SLPKLGGSEVSTFITAEISSNN-AGEITQGYALGVMLGAYKQDFDALIGI-HPTCAEA   57 (296)
Q Consensus         2 ~~~~~~~~~~~~ilG~~~~g~~-a~e~i~~~~~~~~~~~~k~~l~~~i~~-~pt~~e~   57 (296)
                      .+|+|+|++|++|||+|++|++ |+|+|+.++++|+++.+.+||.+++++ ||+++|.
T Consensus        53 ~~Kli~d~~t~~IlG~~ivG~~~a~e~I~~~~~ai~~~~t~~dL~~~~~~yhPt~se~  110 (126)
T d1nhpa3          53 WFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYADFFFQPAFDKP  110 (126)
T ss_dssp             EEEEEECTTTCBEEEEEEEESSCCTTHHHHHHHHHHTTCBHHHHHTCCCCCCTTTCCS
T ss_pred             eEEEEEECCCCCEEEEEEEechhHHHHHHHHHHHHHcCCCHHHHhcCcccCCCCCchh
Confidence            3789999999999999999975 999999999999999999999999886 5999985

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=99.07  E-value=3.2e-10  Score=95.20  Aligned_cols=48  Identities=33%  Similarity=0.447  Sum_probs=40.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHh-CCCcEEEEeccCCCCCCcccccCCeeeccCCCc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAAS-MNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIP  169 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~-~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p  169 (296)
                      .++||+||||||+|++||++|++ .|++|+|+|  +.+      .+||.|.+.++.+
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE--~~~------~~GG~~~~~g~~~   80 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIE--QSV------SPGGGAWLGGQLF   80 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEE--SSS------SCCTTTTCCSTTC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEe--cCC------CCCCceeecCEEc
Confidence            56899999999999999999987 599999999  667      6777776665544

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.05  E-value=1.2e-11  Score=101.19  Aligned_cols=39  Identities=18%  Similarity=0.284  Sum_probs=35.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC-------CcEEEEeccCCCCCCcccccCCee
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMN-------KKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G-------~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      ++|+|||||||||+||++|+++|       ++|+|||  +.+      .+||.+
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E--~~~------~~GG~~   48 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLE--MLP------TPWGLV   48 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEE--SSS------SCSTHH
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEe--cCC------CCCCee
Confidence            58999999999999999999988       4799999  777      888865

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.05  E-value=6e-10  Score=81.92  Aligned_cols=90  Identities=18%  Similarity=0.278  Sum_probs=62.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKK  195 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~  195 (296)
                      .+++|||||..||++|..+++.|.+|+++|  +.+      .+..                                   
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive--~~~------~il~-----------------------------------   63 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVE--MMD------GLMQ-----------------------------------   63 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEEC--SSS------SSST-----------------------------------
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCCEEEEEE--eec------cccc-----------------------------------
Confidence            489999999999999999999999999999  544      1111                                   


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEE---EeCCEE--EE---cceeEEEEeCeEEEcCC
Q psy7665         196 SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVF---VDKHRV--KF---AGEERTVSAQNFIIAVG  260 (296)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~v--~v---~g~~~~~~a~~vV~AtG  260 (296)
                      ..+            ..+...+...+++.|++++.+....   .....+  ++   +++.+++.||.|++|+|
T Consensus        64 ~~d------------~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          64 GAD------------RDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             TSC------------HHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred             cch------------hhHHHHHHHHHHHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence            001            1223345667788899998875421   233333  33   23345799999999998

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.04  E-value=3.8e-10  Score=84.03  Aligned_cols=34  Identities=44%  Similarity=0.608  Sum_probs=31.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      ..+|+|||||++|+++|..|++.|.+|+++|  +.+
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie--~~~   68 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLD--TAA   68 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEC--SSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCcceeeee--ecc
Confidence            3589999999999999999999999999999  544

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.03  E-value=8.6e-11  Score=96.14  Aligned_cols=41  Identities=29%  Similarity=0.367  Sum_probs=37.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      .+|||||||||++|+.||++|+++|++|+|+|  +.+      .+||.|
T Consensus         4 ~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE--~~~------~~GG~~   44 (297)
T d2bcgg1           4 TDYDVIVLGTGITECILSGLLSVDGKKVLHID--KQD------HYGGEA   44 (297)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHTTCCEEEEC--SSS------SSCGGG
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEc--CCC------CCCcce
Confidence            57999999999999999999999999999999  777      677754

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.02  E-value=2.5e-09  Score=77.61  Aligned_cols=30  Identities=10%  Similarity=0.222  Sum_probs=29.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|+|||||+.|+++|..|++.|.+|+|+|
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~   52 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLGIDSYIFA   52 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEEC
T ss_pred             CEEEEECCchHHHHHHHHHHhccccceeee
Confidence            479999999999999999999999999999

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.01  E-value=3.1e-10  Score=95.64  Aligned_cols=32  Identities=13%  Similarity=0.284  Sum_probs=30.2

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      .+||+||||||+|+++|..|++.|++|+|+|+
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~   33 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILER   33 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeC
Confidence            45899999999999999999999999999993

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.01  E-value=4e-09  Score=76.92  Aligned_cols=91  Identities=10%  Similarity=0.167  Sum_probs=62.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcccc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMK  194 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~  194 (296)
                      ...|+|||||+.|++.|..|++.|.+|+++|  +.++...                                        
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~--~~~~~l~----------------------------------------   59 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLV--RTEPLKL----------------------------------------   59 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEC--SSCTTTT----------------------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcchhheEee--ccchhhc----------------------------------------
Confidence            3589999999999999999999999999999  4431100                                        


Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEE-E--eC-CE---EEE--cceeEEEEeCeEEEcCC
Q psy7665         195 KSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVF-V--DK-HR---VKF--AGEERTVSAQNFIIAVG  260 (296)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~--~~-~~---v~v--~g~~~~~~a~~vV~AtG  260 (296)
                       ..+            ..+...+.+.+++.+++++.+.... +  ++ ..   +..  .+....+.||.||+|+|
T Consensus        60 -~~d------------~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          60 -IKD------------NETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             -CCS------------HHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             -ccc------------cchhhhhhhhhhccccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence             001            1123344566788899998875432 2  21 11   221  34447899999999998

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.00  E-value=1.1e-09  Score=86.76  Aligned_cols=32  Identities=34%  Similarity=0.526  Sum_probs=30.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..+||+||||||+|++||.+|++.|++|+|+|
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie   35 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFE   35 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEEC
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEE
Confidence            46799999999999999999999999999999

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.00  E-value=5.7e-10  Score=96.64  Aligned_cols=35  Identities=40%  Similarity=0.501  Sum_probs=31.1

Q ss_pred             CCccccEEEECCChHHHHHHHHHHh----CCCcEEEEec
Q psy7665         112 QTYDYDLCVIGGGSGGISAAKEAAS----MNKKVALFDF  146 (296)
Q Consensus       112 ~~~~~dVvVIGgG~aG~~aA~~l~~----~G~~V~iiE~  146 (296)
                      +..++||||||+|++||.||++|++    .|.+|+|+||
T Consensus        18 e~~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK   56 (356)
T d1jnra2          18 EVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEK   56 (356)
T ss_dssp             EEEECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECS
T ss_pred             eEEecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeC
Confidence            3467899999999999999999975    6999999993

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=6.9e-09  Score=76.15  Aligned_cols=30  Identities=17%  Similarity=0.215  Sum_probs=29.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+++|||||+.||++|..+++.|.+|+++|
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~   52 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMI   52 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEe
Confidence            489999999999999999999999999999

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=98.99  E-value=1.5e-10  Score=90.38  Aligned_cols=110  Identities=21%  Similarity=0.248  Sum_probs=64.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC--cEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK--KVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      .+|||||||++|+++|.+|++.+.  +|+++|  +.+      .....      ........      .....       
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie--~~~------~~~~~------~~~~~~~~------~~~~~-------   55 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIE--PNT------DYYTC------YLSNEVIG------GDRKL-------   55 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEEC--SCS------CEECS------TTHHHHHH------TSSCG-------
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEE--CCC------ccccc------cccccccc------hhhhh-------
Confidence            489999999999999999999884  799999  443      11110      00000000      00000       


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEEEe--CCEEEE-cceeEEEEeCeEEEcCCCCCCCCCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVFVD--KHRVKF-AGEERTVSAQNFIIAVGGRPTYPDIPG  270 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~v~v-~g~~~~~~a~~vV~AtG~~p~~p~i~G  270 (296)
                                       .... .....+...++.+..++....+  ...+.. ++  .++.||++|+|||.+|+.+.+++
T Consensus        56 -----------------~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~i~~D~li~atG~~~~~~~i~~  115 (186)
T d1fcda1          56 -----------------ESIK-HGYDGLRAHGIQVVHDSATGIDPDKKLVKTAGG--AEFGYDRCVVAPGIELIYDKIEQ  115 (186)
T ss_dssp             -----------------GGGE-ECSHHHHTTTEEEECCCEEECCTTTTEEEETTS--CEEECSEEEECCCEEECCTTSTE
T ss_pred             -----------------hhhh-hhhhhccccceeEeeeeeEeeeeccceeecccc--eeeccceEEEEeccccchhhhhh
Confidence                             0000 0011223457777766554332  234444 55  67999999999999988887776


Q ss_pred             Cc
Q psy7665         271 AR  272 (296)
Q Consensus       271 ~~  272 (296)
                      ..
T Consensus       116 ~~  117 (186)
T d1fcda1         116 RA  117 (186)
T ss_dssp             EE
T ss_pred             hh
Confidence            53

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.98  E-value=7.1e-09  Score=75.73  Aligned_cols=33  Identities=24%  Similarity=0.416  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      .+++|||||+.||++|..|++.|.+|+|+|  +.+
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~--~~~   56 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVE--FQP   56 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEC--SSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEE--ecc
Confidence            489999999999999999999999999999  544

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=1.4e-09  Score=85.19  Aligned_cols=30  Identities=30%  Similarity=0.551  Sum_probs=29.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      |||+||||||+|++||.++++.|.+|+|+|
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~~v~iie   31 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMG   31 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEEC
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEE
Confidence            899999999999999999999999999999

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=4.1e-09  Score=89.39  Aligned_cols=33  Identities=27%  Similarity=0.436  Sum_probs=30.1

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      +..|||||||+|+|||+||+++++.| +|+|+||
T Consensus         5 ~~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK   37 (305)
T d1chua2           5 EHSCDVLIIGSGAAGLSLALRLADQH-QVIVLSK   37 (305)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTTTS-CEEEECS
T ss_pred             cccCCEEEECccHHHHHHHHHhhcCC-CEEEEEC
Confidence            35789999999999999999999888 9999993

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.94  E-value=2.9e-09  Score=77.98  Aligned_cols=31  Identities=42%  Similarity=0.527  Sum_probs=29.6

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..+|+|||||+.|+++|..|++.|.+|+++|
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie   60 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVID   60 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECChHHHHHHHHHhhccceEEEEEE
Confidence            3489999999999999999999999999999

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=3e-09  Score=79.49  Aligned_cols=89  Identities=21%  Similarity=0.307  Sum_probs=60.6

Q ss_pred             ccEEEECCChHHHHHHHHHHh----CCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCc
Q psy7665         116 YDLCVIGGGSGGISAAKEAAS----MNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGF  191 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~----~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~  191 (296)
                      .+++|||||++|+++|..|++    .|.+|+++|  +.+      .+..     .                         
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~--~~~------~~l~-----~-------------------------   79 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLF--PEK------GNMG-----K-------------------------   79 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEEC--SSS------STTT-----T-------------------------
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEec--ccc------cCCc-----c-------------------------
Confidence            479999999999999999963    589999999  443      1100     0                         


Q ss_pred             cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceE-EE--EeCCEE--EE-cceeEEEEeCeEEEcCC
Q psy7665         192 HMKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA-VF--VDKHRV--KF-AGEERTVSAQNFIIAVG  260 (296)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~--~~~~~v--~v-~g~~~~~~a~~vV~AtG  260 (296)
                          .++            +.+...+.+.+++.||+++.++. ..  .++..+  +. +|  .++.||.||+|+|
T Consensus        80 ----~~~------------~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G--~~i~aD~Vi~A~G  136 (137)
T d1m6ia2          80 ----ILP------------EYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDG--RKVETDHIVAAVG  136 (137)
T ss_dssp             ----TSC------------HHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTS--CEEEESEEEECCC
T ss_pred             ----cCC------------HHHHHHHHHHHHhCCcEEEeCCEEEEEEecCCEEEEEECCC--CEEECCEEEEeec
Confidence                000            11223355677888999987743 22  234444  44 56  6799999999999

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.91  E-value=9.3e-09  Score=74.50  Aligned_cols=88  Identities=20%  Similarity=0.237  Sum_probs=58.9

Q ss_pred             ccEEEECCChHHHHHHHHHHh---CCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCcc
Q psy7665         116 YDLCVIGGGSGGISAAKEAAS---MNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFH  192 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~---~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~  192 (296)
                      .+++|||||++|+++|..+++   .|.+|+++|  +.+      .+..                                
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~--~~~------~il~--------------------------------   58 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAY--RGD------MILR--------------------------------   58 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEE--SSS------SSST--------------------------------
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceec--ccc------cccc--------------------------------
Confidence            489999999999999987654   488999999  443      1100                                


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceE-EEE--e-CCE--EEE-cceeEEEEeCeEEEcCC
Q psy7665         193 MKKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA-VFV--D-KHR--VKF-AGEERTVSAQNFIIAVG  260 (296)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~--~-~~~--v~v-~g~~~~~~a~~vV~AtG  260 (296)
                         .++            ..+...+.+.+++.|++++.+.. ..+  . +..  +.. +|  .++.||.||+|+|
T Consensus        59 ---~~d------------~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g--~~i~~D~Vi~a~G  116 (117)
T d1feca2          59 ---GFD------------SELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESG--AEADYDVVMLAIG  116 (117)
T ss_dssp             ---TSC------------HHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTS--CEEEESEEEECSC
T ss_pred             ---ccc------------chhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCEEEEEECCC--CEEEcCEEEEecC
Confidence               011            12233455667888999987643 222  2 222  333 55  6789999999998

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.89  E-value=3e-10  Score=92.49  Aligned_cols=38  Identities=21%  Similarity=0.437  Sum_probs=33.2

Q ss_pred             cEEEECCChHHHHHHHHHHhC--CCcEEEEeccCCCCCCcccccCCee
Q psy7665         117 DLCVIGGGSGGISAAKEAASM--NKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      +|+||||||||++||.+|++.  |++|+|||  +.+      .+||.+
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e--~~~------~~gG~~   42 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYE--KQL------VPFGLV   42 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEEC--SSS------SSCTHH
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEe--CCC------CCCcee
Confidence            799999999999999999876  77999999  777      777743

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.89  E-value=2e-08  Score=73.22  Aligned_cols=30  Identities=17%  Similarity=0.128  Sum_probs=29.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+++|||||+.|+++|..+++.|.+|+|++
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~   50 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMV   50 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEE
Confidence            379999999999999999999999999999

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=9.1e-09  Score=78.91  Aligned_cols=44  Identities=16%  Similarity=0.320  Sum_probs=32.8

Q ss_pred             HHHHHHCCcEEEcceE-EEEeCCEEEE--cceeEEEEeCeEEEcCCC
Q psy7665         218 EKELEKNKIDYFNAKA-VFVDKHRVKF--AGEERTVSAQNFIIAVGG  261 (296)
Q Consensus       218 ~~~~~~~~v~~~~~~~-~~~~~~~v~v--~g~~~~~~a~~vV~AtG~  261 (296)
                      ...++..+++++++.. ..+++..+.+  +|.+..+.||.||+|+|.
T Consensus       115 ~~~~~~~gv~~~~~~~v~~i~~~gv~~~~~g~e~~i~aD~Vv~A~Gq  161 (162)
T d1ps9a2         115 RTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAGQ  161 (162)
T ss_dssp             HHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCCE
T ss_pred             HHHHhhCCeEEEeeeEEEEEcCCCCEEecCCeEEEEECCEEEECCCC
Confidence            4556777999987654 3356666655  676678999999999993

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.88  E-value=1.1e-08  Score=74.70  Aligned_cols=89  Identities=18%  Similarity=0.359  Sum_probs=61.6

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeeeccCCCchhHHHHhhhhHHHhhcccccCccccc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCVNVGCIPKKLFHRASLLNEEATTSDNFGFHMKK  195 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~  195 (296)
                      .+++|||||..|+++|..+++.|.+|+|+|  +.+      .+-.                                   
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~--~~~------~~l~-----------------------------------   62 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVE--FAS------EIVP-----------------------------------   62 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEEC--SSS------SSST-----------------------------------
T ss_pred             CeEEEEccchHHHHHHHHHHhcCCeEEEEE--Ecc------ccCc-----------------------------------
Confidence            489999999999999999999999999999  444      1100                                   


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceEEE-E--eCC--EEEE----cceeEEEEeCeEEEcC
Q psy7665         196 SFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKAVF-V--DKH--RVKF----AGEERTVSAQNFIIAV  259 (296)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~--~~~--~v~v----~g~~~~~~a~~vV~At  259 (296)
                      ..+            ..+...+...+++.|++++.++... +  ...  .+++    +++...+.||.|++|.
T Consensus        63 ~~d------------~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          63 TMD------------AEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             TSC------------HHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             hhh------------hcchhhhhhhhhcccceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            001            1223345567788899999876532 2  222  3333    3445679999999884

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.85  E-value=1.3e-09  Score=95.64  Aligned_cols=47  Identities=23%  Similarity=0.381  Sum_probs=40.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHh------CCCcEEEEeccCCCCCCcccccCCee
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAAS------MNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~------~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      ++||||||||||||++||+.|++      +|++|+|||  +...+|.+.-.||.+
T Consensus        31 ~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllE--K~~~pG~k~~~Ggvl   83 (380)
T d2gmha1          31 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVE--KAAHIGAHTLSGACL   83 (380)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEEC--SSSSTTTTCCCCCEE
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEc--CCCCCCCCccccccc
Confidence            57999999999999999999997      899999999  777778775556643

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=7.6e-10  Score=93.89  Aligned_cols=39  Identities=33%  Similarity=0.606  Sum_probs=36.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      +||+|||||++||++|++|+++|++|+|+|  +.+      .+||.|
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiE--k~~------~iGG~~   40 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLVIE--KRN------HIGGNA   40 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEEC--SSS------SSSGGG
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEEEE--CCC------Ccccce
Confidence            699999999999999999999999999999  777      888877

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.82  E-value=1.4e-09  Score=91.45  Aligned_cols=39  Identities=28%  Similarity=0.468  Sum_probs=35.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      ++|+|||||++|++||++|+++|++|+|||  +.+      .+||.|
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE--~~~------~~GG~~   40 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFE--AEG------KAGGKL   40 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEEC--SSS------SSCSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEe--CCC------CCcCce
Confidence            379999999999999999999999999999  677      677755

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.81  E-value=1.4e-09  Score=89.30  Aligned_cols=38  Identities=29%  Similarity=0.543  Sum_probs=33.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC-cEEEEeccCCCCCCcccccCCee
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNK-KVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      ||+|||||++||+||++|+++|+ +|+|+|  +.+      .+||.+
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE--~~~------~~GG~~   40 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILE--ATD------HIGGRM   40 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEEC--SSS------SSBTTS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEE--CCC------CCCceE
Confidence            89999999999999999999996 799999  666      566643

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.81  E-value=3.5e-08  Score=71.33  Aligned_cols=30  Identities=20%  Similarity=0.214  Sum_probs=26.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhC---CCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASM---NKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~---G~~V~iiE  145 (296)
                      .+++|||||+.|+++|..+...   |.+|+++|
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~   53 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCY   53 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEe
Confidence            4899999999999999877655   45799999

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.78  E-value=8e-09  Score=85.17  Aligned_cols=33  Identities=21%  Similarity=0.415  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCC
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPS  150 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~  150 (296)
                      .+|+||||||+|+++|..|+++|++|+|||  +.+
T Consensus         5 ~kV~IiGaG~aGl~~A~~L~~~G~~v~v~E--r~~   37 (265)
T d2voua1           5 DRIAVVGGSISGLTAALMLRDAGVDVDVYE--RSP   37 (265)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEC--SSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEEe--CCC
Confidence            489999999999999999999999999999  554

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.77  E-value=2.2e-09  Score=89.97  Aligned_cols=38  Identities=29%  Similarity=0.630  Sum_probs=34.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      ||+|||||++|++||++|+++|++|+|+|  +.+      .+||.+
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE--~~~------~~GG~~   39 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLE--SSA------RLGGAV   39 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEEC--SSS------SSBTTC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEe--cCC------CCCceE
Confidence            89999999999999999999999999999  777      666643

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.77  E-value=4e-09  Score=83.71  Aligned_cols=106  Identities=17%  Similarity=0.355  Sum_probs=62.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--CcEEEEeccCCCCCCcccccCCeeeccCC-CchhHHHHhhhhHHHhhcccccCccc
Q psy7665         117 DLCVIGGGSGGISAAKEAASMN--KKVALFDFVTPSQHGTVWGLGGTCVNVGC-IPKKLFHRASLLNEEATTSDNFGFHM  193 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE~~~~~~~g~~~~~GG~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~g~~~  193 (296)
                      +|+|||||++|+++|..|++.+  .+|+++|  +.+      .+.-    ..+ +|. ++         .....      
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~--~~~------~~~~----~~~~~~~-~l---------~~~~~------   53 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYE--KGD------FISF----LSAGMQL-YL---------EGKVK------   53 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEE--SSS------SSSB----CGGGHHH-HH---------TTSSC------
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEe--CCC------cccc----cccCcch-hh---------ccccc------
Confidence            6999999999999999999875  5799999  433      1100    000 000 00         00000      


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEcceE-EEEe--CCEEEE----cceeEEEEeCeEEEcCCCCCCC
Q psy7665         194 KKSFTWKTLVDNVQKYIRNLNNNYEKELEKNKIDYFNAKA-VFVD--KHRVKF----AGEERTVSAQNFIIAVGGRPTY  265 (296)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~--~~~v~v----~g~~~~~~a~~vV~AtG~~p~~  265 (296)
                          .           .+.+.......+++.|++++.+.. ..++  ...+++    +|++..+.+|.+|+|+|+.|..
T Consensus        54 ----~-----------~~~~~~~~~~~l~~~gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~  117 (198)
T d1nhpa1          54 ----D-----------VNSVRYMTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFE  117 (198)
T ss_dssp             ----C-----------GGGSBSCCHHHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECC
T ss_pred             ----c-----------hHHHHHhhHHHHHHCCcEEEEeeceeeEeeccccceeeecccccccccccceeeEeecceeec
Confidence                0           000011113445677999876644 3332  455655    4556788999999999987654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=2.7e-09  Score=90.89  Aligned_cols=40  Identities=28%  Similarity=0.530  Sum_probs=35.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGT  161 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~  161 (296)
                      ...+|+|||||++||+||++|+++|++|+|+|  +.+      .+||.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlE--a~~------r~GGr   43 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLE--ARD------RVGGR   43 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEEC--SSS------SSBTT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEe--CCC------CCccc
Confidence            34589999999999999999999999999999  777      56664

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=2.7e-09  Score=91.57  Aligned_cols=38  Identities=32%  Similarity=0.584  Sum_probs=34.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      ||+|||||++|++||++|+++|++|+|+|  +.+      .+||.+
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE--~~~------~~GGr~   38 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLE--ARD------RVGGRT   38 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEE--SSS------SSBTTC
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEe--cCC------CCccee
Confidence            89999999999999999999999999999  677      566644

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.70  E-value=4.2e-09  Score=89.65  Aligned_cols=40  Identities=25%  Similarity=0.453  Sum_probs=35.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGT  161 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~  161 (296)
                      ...+|+|||||++|++||++|+++|++|+|||  +.+      .+||.
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE--~~~------~~GG~   68 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLE--ASE------RPGGR   68 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEEC--SSS------SSBTT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEe--CCC------CCCCe
Confidence            33589999999999999999999999999999  677      56664

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.68  E-value=6.2e-09  Score=88.76  Aligned_cols=39  Identities=21%  Similarity=0.467  Sum_probs=35.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCee
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      .+|+|||||++||+||++|+++|++|+|+|  +.+      .+||.|
T Consensus         3 KKI~IIGaG~sGL~aA~~L~k~G~~V~viE--k~~------~iGG~~   41 (314)
T d2bi7a1           3 KKILIVGAGFSGAVIGRQLAEKGHQVHIID--QRD------HIGGNS   41 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEE--SSS------SSSGGG
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCCEEEEE--CCC------CCcCee
Confidence            479999999999999999999999999999  777      788866

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.67  E-value=6.6e-09  Score=79.93  Aligned_cols=28  Identities=29%  Similarity=0.646  Sum_probs=25.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|+|||||++|+++|..|++ +.+|+|+|
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~   29 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVID   29 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEEC
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEe
Confidence            69999999999999999965 77999999

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.66  E-value=5.4e-08  Score=80.60  Aligned_cols=33  Identities=33%  Similarity=0.549  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC-cEEEEeccCCC
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK-KVALFDFVTPS  150 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE~~~~~  150 (296)
                      .||+||||||+||++|..|+++|. +|+|+|  +.+
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~E--r~~   35 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLE--SSS   35 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEE--SSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEe--CCC
Confidence            489999999999999999999995 899999  544

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.66  E-value=3.5e-09  Score=82.92  Aligned_cols=30  Identities=17%  Similarity=0.164  Sum_probs=27.3

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|+|||||++|+++|..|++.|.++.|++
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~   33 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITV   33 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEE
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEE
Confidence            369999999999999999999998877776

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=2.9e-09  Score=85.70  Aligned_cols=32  Identities=22%  Similarity=0.449  Sum_probs=28.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      ..+++||||||++|+++|..|++.|.  +|++++
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~   36 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVS   36 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEe
Confidence            45789999999999999999999876  599998

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.61  E-value=1.6e-08  Score=79.69  Aligned_cols=40  Identities=23%  Similarity=0.465  Sum_probs=34.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEeccCCCCCCcccccCCee
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFDFVTPSQHGTVWGLGGTC  162 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE~~~~~~~g~~~~~GG~~  162 (296)
                      ..+|+||||||+|++||.+|+++|+ +|+|||  +.+      .+||.+
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E--~~~------~~gg~~   44 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFE--KQE------YVGGLS   44 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEE--SSS------SCSTHH
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEE--ecC------cccchh
Confidence            4589999999999999999999998 599999  666      667744

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.60  E-value=2e-07  Score=70.73  Aligned_cols=41  Identities=12%  Similarity=0.133  Sum_probs=32.2

Q ss_pred             eeccccCCCCccccEEEE--CCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         104 YDYLDNNFQTYDYDLCVI--GGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       104 ~~~~~~~~~~~~~dVvVI--GgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+.+..+ ...+..|+|+  |||..|+++|..|+++|.+|+++|
T Consensus        29 ~d~l~~~-~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~   71 (156)
T d1djqa2          29 EQVMDGK-KKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVS   71 (156)
T ss_dssp             HHHHHTC-SCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHhcCc-cccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEe
Confidence            4555443 2234466666  999999999999999999999999

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.49  E-value=3.4e-08  Score=83.82  Aligned_cols=46  Identities=30%  Similarity=0.386  Sum_probs=37.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhC--CCcEEEEeccCCCCCCcccccCCeeeccCC
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASM--NKKVALFDFVTPSQHGTVWGLGGTCVNVGC  167 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~--G~~V~iiE~~~~~~~g~~~~~GG~~~~~~~  167 (296)
                      .++||+||||||+|++||++|+++  |++|+|+|  +.+      .+||.+...++
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~--~~~------~~~~~~~~g~~   96 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIE--SSV------APGGGSWLGGQ   96 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEEC--SSS------SCCTTTTCCGG
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEE--cCC------CCcceeEecCE
Confidence            467999999999999999999964  99999999  676      66775544333

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.43  E-value=9.7e-08  Score=78.03  Aligned_cols=32  Identities=25%  Similarity=0.281  Sum_probs=30.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      ..||+|||||++|+++|++|+++|++|+|||+
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier   37 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHILAR   37 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEEeC
Confidence            34899999999999999999999999999993

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.41  E-value=7.8e-08  Score=83.09  Aligned_cols=34  Identities=35%  Similarity=0.635  Sum_probs=32.0

Q ss_pred             CccccEEEECCChHHHHHHHHHHhCCCcEEEEec
Q psy7665         113 TYDYDLCVIGGGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       113 ~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      +.+|||||||+|++|+.+|.+|++.|++|+|+|+
T Consensus         2 d~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEa   35 (379)
T d2f5va1           2 DIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDI   35 (379)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCcccEEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence            3679999999999999999999999999999993

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.38  E-value=2.7e-07  Score=71.62  Aligned_cols=30  Identities=13%  Similarity=0.160  Sum_probs=28.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|+|||||++|+++|..|++.|.+|+|++
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~   33 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRL   33 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCceEEEE
Confidence            489999999999999999999999988888

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.27  E-value=3.2e-07  Score=78.49  Aligned_cols=33  Identities=27%  Similarity=0.436  Sum_probs=30.1

Q ss_pred             ccccEEEECCChHHHHHHHHHH-----hCCCcEEEEec
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAA-----SMNKKVALFDF  146 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~-----~~G~~V~iiE~  146 (296)
                      ..|||+||||||+|+++|..|+     ++|++|+|||+
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr   43 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDK   43 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcC
Confidence            4689999999999999999996     57999999993

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.15  E-value=6.6e-07  Score=77.33  Aligned_cols=34  Identities=24%  Similarity=0.260  Sum_probs=31.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEecc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFV  147 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~  147 (296)
                      ..+||||||+|++|+.+|.+|+++|++|+|+|++
T Consensus         6 ~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           6 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            5689999999999999999999999999999943

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.09  E-value=1e-06  Score=76.06  Aligned_cols=33  Identities=39%  Similarity=0.634  Sum_probs=31.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEecc
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFDFV  147 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~  147 (296)
                      .||+||||+|++|+.+|.+|++.|++|+|+|++
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG   34 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERG   34 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEcc
Confidence            589999999999999999999999999999944

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.09  E-value=1.1e-06  Score=75.76  Aligned_cols=32  Identities=19%  Similarity=0.265  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEecc
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFDFV  147 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~  147 (296)
                      .||||||+|++|+.+|.+|+++|++|+|+|++
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   34 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMG   34 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecC
Confidence            49999999999999999999999999999943

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.07  E-value=4e-05  Score=57.37  Aligned_cols=31  Identities=23%  Similarity=0.261  Sum_probs=27.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCc-EEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKK-VALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~-V~iiE  145 (296)
                      ..+|+|||||.+|+.+|..+.++|.+ |+++.
T Consensus        45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~   76 (153)
T d1gtea3          45 RGAVIVLGAGDTAFDCATSALRCGARRVFLVF   76 (153)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCcceeEEE
Confidence            34799999999999999999999864 88988

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.87  E-value=4.5e-06  Score=72.74  Aligned_cols=34  Identities=26%  Similarity=0.404  Sum_probs=31.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-CcEEEEecc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMN-KKVALFDFV  147 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE~~  147 (296)
                      ..||+||||||++||..|.+|++.| .+|+|+|++
T Consensus        23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG   57 (391)
T d1gpea1          23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKG   57 (391)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESS
T ss_pred             CeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            4599999999999999999999998 699999944

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.84  E-value=5.1e-06  Score=72.16  Aligned_cols=34  Identities=21%  Similarity=0.292  Sum_probs=30.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCC-CcEEEEecc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMN-KKVALFDFV  147 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE~~  147 (296)
                      ..||+||||||.+||..|.+|++.+ ++|+|+|++
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG   50 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESG   50 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESS
T ss_pred             CeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCC
Confidence            4699999999999999999999976 799999944

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.81  E-value=7.3e-06  Score=70.30  Aligned_cols=33  Identities=27%  Similarity=0.461  Sum_probs=30.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEecc
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFV  147 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~  147 (296)
                      ..||+||||+|++|+.+|.+|++. .+|+|+|++
T Consensus        25 ~~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG   57 (351)
T d1ju2a1          25 GSYDYVIVGGGTSGCPLAATLSEK-YKVLVLERG   57 (351)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTTT-SCEEEECSS
T ss_pred             CCccEEEECccHHHHHHHHHhcCC-CCEEEEecC
Confidence            569999999999999999999986 999999943

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.64  E-value=3.2e-06  Score=68.02  Aligned_cols=29  Identities=28%  Similarity=0.181  Sum_probs=25.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|+|||||.+|+++|++|+++|++|+++|
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e   30 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPL   30 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSC
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEe
Confidence            69999999999999999999998765554

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=0.00042  Score=49.77  Aligned_cols=32  Identities=34%  Similarity=0.606  Sum_probs=30.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+.+|+|||||.+.+..|.+|++...+|+++-
T Consensus        29 ~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~   60 (126)
T d1fl2a2          29 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLE   60 (126)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHTTBSEEEEEC
T ss_pred             CCceEEEEeCCHHHHHHHHhhhccCCceEEEe
Confidence            45699999999999999999999999999998

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=0.00099  Score=47.72  Aligned_cols=32  Identities=25%  Similarity=0.441  Sum_probs=30.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+.+|+|||||-+++..|..|++...+|+++-
T Consensus        26 ~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~   57 (126)
T d1trba2          26 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIH   57 (126)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhcCCcEEEEe
Confidence            34599999999999999999999999999998

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=97.35  E-value=0.0047  Score=48.35  Aligned_cols=32  Identities=28%  Similarity=0.434  Sum_probs=29.4

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+.+|+|||+|.+|+.+|..+++.+.+++++=
T Consensus        31 ~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~   62 (235)
T d1w4xa2          31 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQ   62 (235)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEE
T ss_pred             CCCEEEEECCCccHHHHHHHHHhhhccccccc
Confidence            56799999999999999999999999888886

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.33  E-value=2.5e-07  Score=74.97  Aligned_cols=78  Identities=10%  Similarity=-0.064  Sum_probs=52.4

Q ss_pred             CCceeeccceeeeeeeccccCCccchhhhccC-----cceeeccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEEE
Q psy7665          69 EPEVIKLHTPYLVLAKARFLLPTLECQEVYHD-----GRFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVAL  143 (296)
Q Consensus        69 ~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~i  143 (296)
                      +.+....+.+|.+|+|+|..+..+........     .........  .....+|+|||||..|+++|..|++.|.+|++
T Consensus       131 ~~~~~~~~~~d~vviAtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtl  208 (233)
T d1djqa3         131 TADDVLQYGADKVIIATGASECTLWNELKARESEWAENDIKGIYLI--GDAEAPRLIADATFTGHRVAREIEEANPQIAI  208 (233)
T ss_dssp             CHHHHHTSCCSEEEECCCEECCHHHHHHHHTTHHHHHTTCCEEEEC--GGGTSCCCHHHHHHHHHHHHHTTTSSCTTSCC
T ss_pred             cchhhhhhccceeeeccCCCcccccccccccccccchhhhhhhhhc--cccCCceeEecCchHHHHHHHHHHhcCCceEE
Confidence            34445577899999999987654433221111     111111111  12345799999999999999999999999999


Q ss_pred             EeccCCC
Q psy7665         144 FDFVTPS  150 (296)
Q Consensus       144 iE~~~~~  150 (296)
                      ++  +.+
T Consensus       209 i~--r~~  213 (233)
T d1djqa3         209 PY--KRE  213 (233)
T ss_dssp             CC--CCC
T ss_pred             EE--ecc
Confidence            99  544

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=1.3e-07  Score=73.33  Aligned_cols=108  Identities=10%  Similarity=0.028  Sum_probs=76.4

Q ss_pred             EEEEEcCChhHHHHHHHHHHHcCCCHHHHccCcCCCCChHHHHHHHHHhhcCCCCceeeccceeeeeeeccccCCccchh
Q psy7665          16 TAEISSNNAGEITQGYALGVMLGAYKQDFDALIGIHPTCAEAISLSWIKGYNIEPEVIKLHTPYLVLAKARFLLPTLECQ   95 (296)
Q Consensus        16 G~~~~g~~a~e~i~~~~~~~~~~~~k~~l~~~i~~~pt~~e~l~v~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~   95 (296)
                      |+.++..++...+++.......-..+.++.+.+.++-++.+.+++++++|+.+|.+...  .+|+||+++|..+.....+
T Consensus        66 G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt~~~~~--~~d~vilAtG~~~~~~~~p  143 (179)
T d1ps9a3          66 GHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTADQLQ--AFDETILASGIPNRALAQP  143 (179)
T ss_dssp             TCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCSSSSC--CSSEEEECCCEECCTTHHH
T ss_pred             ccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEEcccccc--cceeEEEeecCCCcccccc
Confidence            45666677776666665555555666777777888888999999999999999999864  6688999999765544433


Q ss_pred             hhccCcceeeccccCCCCccccEEEECCChHHHHH-HHHHHhCCCc
Q psy7665          96 EVYHDGRFYDYLDNNFQTYDYDLCVIGGGSGGISA-AKEAASMNKK  140 (296)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~dVvVIGgG~aG~~a-A~~l~~~G~~  140 (296)
                      ..+               ...+|+|||+|..++.+ +..+.+.|.+
T Consensus       144 g~~---------------~g~~v~vigggd~a~~~~~~~Av~~G~~  174 (179)
T d1ps9a3         144 LID---------------SGKTVHLIGGCDVAMELDARRAIAQGTR  174 (179)
T ss_dssp             HHT---------------TTCCEEECGGGTCCSSCCHHHHHHHHHH
T ss_pred             hhc---------------cCCEEEEECCcHhhhhccchhhhhccCE
Confidence            221               23479999999888765 4444444433

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=0.00014  Score=49.32  Aligned_cols=31  Identities=19%  Similarity=0.259  Sum_probs=29.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +.+|+|+|.|-+|+++|.+|.++|.+|+++|
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D   35 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMD   35 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEee
Confidence            3479999999999999999999999999999

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.21  E-value=0.0032  Score=45.21  Aligned_cols=32  Identities=28%  Similarity=0.429  Sum_probs=30.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+.+|+|||||-+.+..|.+|++...+|+++-
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~   64 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIH   64 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSSEEEEEC
T ss_pred             CCCEEEEEcCchHHHHHHHHHhCCCCcEEEEE
Confidence            45599999999999999999999999999998

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.07  E-value=0.00024  Score=53.90  Aligned_cols=30  Identities=13%  Similarity=0.067  Sum_probs=28.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|+|||+|-.|..+|.+|.+.|++|+|+|
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~d   32 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVAC   32 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEE
Confidence            379999999999999999999999999999

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.99  E-value=0.00034  Score=53.37  Aligned_cols=29  Identities=31%  Similarity=0.398  Sum_probs=28.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +++|||+|..|+..|..|+++|++|.+++
T Consensus         3 ~iaIiGaG~~G~~~A~~l~~~G~~V~~~~   31 (184)
T d1bg6a2           3 TYAVLGLGNGGHAFAAYLALKGQSVLAWD   31 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             EEEEECccHHHHHHHHHHHHCCCEEEEEE
Confidence            79999999999999999999999999999

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.55  E-value=0.0012  Score=49.22  Aligned_cols=29  Identities=17%  Similarity=0.161  Sum_probs=28.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|+|||+|..|...|..|++.|++|++++
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~   30 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWL   30 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEE
Confidence            69999999999999999999999999999

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.52  E-value=0.0011  Score=50.22  Aligned_cols=29  Identities=28%  Similarity=0.362  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|+|||+|-+|+.|+..+.+.|.+|.++|
T Consensus        31 ~VvViGaGvaG~~Aa~~A~~lGA~V~v~D   59 (183)
T d1l7da1          31 RVLVFGVGVAGLQAIATAKRLGAVVMATD   59 (183)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             EEEEEcCcHHHHHHHHHHHHcCCEEEEEe
Confidence            89999999999999999999999999999

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.51  E-value=0.001  Score=51.77  Aligned_cols=29  Identities=21%  Similarity=0.213  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||.|..|+.+|..++++|++|+.+|
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D   30 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVD   30 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEEC
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEe
Confidence            58999999999999999999999999999

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.49  E-value=0.0013  Score=49.10  Aligned_cols=30  Identities=37%  Similarity=0.632  Sum_probs=29.2

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      -+|+|||+|-+|+.|+..+.+.|.+|.++|
T Consensus        33 a~V~ViGaGvaG~~A~~~A~~lGA~V~~~D   62 (168)
T d1pjca1          33 GKVVILGGGVVGTEAAKMAVGLGAQVQIFD   62 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cEEEEECCChHHHHHHHHHhhCCCEEEEEe
Confidence            489999999999999999999999999999

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.48  E-value=0.011  Score=46.10  Aligned_cols=21  Identities=24%  Similarity=0.302  Sum_probs=19.1

Q ss_pred             cccEEEECCChHHHHHHHHHH
Q psy7665         115 DYDLCVIGGGSGGISAAKEAA  135 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~  135 (296)
                      +.+|+|||+|-+++-+|..|.
T Consensus        39 gk~VvVIGgGNvAlD~AR~ll   59 (216)
T d1lqta1          39 GARAVVIGNGNVALDVARILL   59 (216)
T ss_dssp             SSEEEEECCSHHHHHHHHHHH
T ss_pred             CceEEEECCCchhHhhhhhhc
Confidence            458999999999999999887

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.46  E-value=0.0015  Score=47.04  Aligned_cols=29  Identities=24%  Similarity=0.363  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .|+|+|+|..|...|..|.+.|++|+++|
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid   30 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLID   30 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceec
Confidence            69999999999999999999999999999

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.36  E-value=0.0034  Score=55.13  Aligned_cols=42  Identities=29%  Similarity=0.376  Sum_probs=38.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEeccCCCCCCcccccCCeee
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFDFVTPSQHGTVWGLGGTCV  163 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE~~~~~~~g~~~~~GG~~~  163 (296)
                      ..|||||+|.|+.=+..|..|++.|++|+=+|  +++      .-||.|.
T Consensus         5 ~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD--~N~------yYGg~~a   46 (491)
T d1vg0a1           5 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVD--SRS------YYGGNWA   46 (491)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEEC--SSS------SSCGGGC
T ss_pred             CccCEEEECCChHHHHHHHHHHhcCCEEEEec--CCC------cCCCccc
Confidence            57899999999999999999999999999999  777      7788663

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.28  E-value=0.0012  Score=48.63  Aligned_cols=32  Identities=25%  Similarity=0.396  Sum_probs=29.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+..|+|||||.+|+.-|..|.+.|.+|+|+.
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVva   43 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVS   43 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence            34589999999999999999999999999996

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.24  E-value=0.002  Score=46.35  Aligned_cols=29  Identities=38%  Similarity=0.400  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +++|||+|..|...|..|.+.|++|+++|
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid   30 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVD   30 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEec
Confidence            68999999999999999999999999999

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.0027  Score=48.89  Aligned_cols=30  Identities=40%  Similarity=0.526  Sum_probs=29.0

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|.|||+|..|..-|..++..|++|+++|
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D   34 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVD   34 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEE
Confidence            489999999999999999999999999999

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.11  E-value=0.003  Score=44.07  Aligned_cols=31  Identities=19%  Similarity=0.302  Sum_probs=29.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..|+|||||.+|..-|..|.+.|.+|+++.
T Consensus        12 ~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~   42 (113)
T d1pjqa1          12 DRDCLIVGGGDVAERKARLLLEAGARLTVNA   42 (113)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEe
Confidence            4589999999999999999999999999998

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.89  E-value=0.0032  Score=48.13  Aligned_cols=30  Identities=27%  Similarity=0.298  Sum_probs=28.7

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|.|||+|..|..-|..++..|++|+++|
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D   34 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKD   34 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEE
Confidence            379999999999999999999999999999

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.88  E-value=0.0029  Score=43.73  Aligned_cols=32  Identities=16%  Similarity=0.213  Sum_probs=29.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+.+|+|||+|.+|+..|..|++.+.+++++-
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~   62 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTPVAKHPIYQS   62 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHhcCEEEEEE
Confidence            45699999999999999999999999888777

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=95.40  E-value=0.0065  Score=44.43  Aligned_cols=30  Identities=23%  Similarity=0.357  Sum_probs=27.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCC--CcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMN--KKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE  145 (296)
                      .+|.|||+|..|..+|+.|+..|  .+++++|
T Consensus         6 ~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D   37 (146)
T d1ez4a1           6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVD   37 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEee
Confidence            48999999999999999999988  4799999

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.24  E-value=0.0066  Score=46.58  Aligned_cols=28  Identities=25%  Similarity=0.456  Sum_probs=26.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||.|.+|+.+|..++ +|++|+.+|
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~D   29 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVD   29 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEEC
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEE
Confidence            6999999999999998886 599999999

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.17  E-value=0.011  Score=43.97  Aligned_cols=29  Identities=21%  Similarity=0.154  Sum_probs=28.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||.|..|...|..|+++|++|+++|
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d   30 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVS   30 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEE
Confidence            58999999999999999999999999999

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.05  E-value=0.013  Score=43.70  Aligned_cols=30  Identities=23%  Similarity=0.246  Sum_probs=28.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..|+|+|+|+.|+.++..++..|.+|+++|
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~   57 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTA   57 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEEcccccchhhHhhHhhhcccccccc
Confidence            479999999999999999999999999999

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.03  E-value=0.0076  Score=46.10  Aligned_cols=30  Identities=20%  Similarity=0.304  Sum_probs=28.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|+|||+|.-|.+.|..|++.|++|+++.
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~   37 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWH   37 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEE
Confidence            479999999999999999999999999998

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.02  E-value=0.0087  Score=45.31  Aligned_cols=29  Identities=14%  Similarity=0.321  Sum_probs=28.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||+|.-|.+.|..|++.|++|.++.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~   30 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWG   30 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence            69999999999999999999999999997

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.01  E-value=0.12  Score=40.12  Aligned_cols=23  Identities=13%  Similarity=0.169  Sum_probs=20.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhC
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASM  137 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~  137 (296)
                      ..+|+|||+|-+++-+|..|.+.
T Consensus        39 gk~VvVIGgGNVAlD~aR~l~r~   61 (225)
T d1cjca1          39 CDTAVILGQGNVALDVARILLTP   61 (225)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSC
T ss_pred             CceEEEECCchhHHHHHHHHhcC
Confidence            45899999999999999999883

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=94.99  E-value=0.012  Score=42.68  Aligned_cols=29  Identities=38%  Similarity=0.448  Sum_probs=27.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      +|.|||+|.+|..+|+.+..+|.  +++++|
T Consensus         3 Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D   33 (143)
T d1llda1           3 KLAVIGAGAVGSTLAFAAAQRGIAREIVLED   33 (143)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCcEEEEEE
Confidence            79999999999999999999986  799999

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=94.98  E-value=0.011  Score=43.61  Aligned_cols=31  Identities=26%  Similarity=0.302  Sum_probs=28.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      ..+|.|||+|.+|..+|+.|+..+. +++++|
T Consensus         7 ~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D   38 (154)
T d1pzga1           7 RKKVAMIGSGMIGGTMGYLCALRELADVVLYD   38 (154)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCceEEEEE
Confidence            4589999999999999999998885 799999

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=94.97  E-value=0.013  Score=43.41  Aligned_cols=31  Identities=26%  Similarity=0.411  Sum_probs=28.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      ..+|.|||+|.+|.++|+.|...|.  +++++|
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD   52 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSLADELALVD   52 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEE
Confidence            3589999999999999999999986  799999

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.96  E-value=0.011  Score=43.27  Aligned_cols=32  Identities=25%  Similarity=0.245  Sum_probs=28.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      ...+|.|||+|..|..+|+.|+..|.  +++++|
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~D   38 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLID   38 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEe
Confidence            34589999999999999999999885  799999

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=94.90  E-value=0.011  Score=43.01  Aligned_cols=29  Identities=28%  Similarity=0.436  Sum_probs=27.0

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      +|.|||+|.+|.++|+.|+..+. +++++|
T Consensus         3 KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D   32 (142)
T d1uxja1           3 KISIIGAGFVGSTTAHWLAAKELGDIVLLD   32 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCcceEEEEe
Confidence            79999999999999999998885 899999

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=94.88  E-value=0.011  Score=43.17  Aligned_cols=29  Identities=21%  Similarity=0.323  Sum_probs=26.9

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      +|.|||+|.+|..+|+.|..+|.  +++++|
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~D   33 (146)
T d1hyha1           3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFID   33 (146)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred             eEEEECcCHHHHHHHHHHHhcCCCceEEEEe
Confidence            79999999999999999999874  799999

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=94.73  E-value=0.016  Score=41.97  Aligned_cols=29  Identities=34%  Similarity=0.442  Sum_probs=27.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      +|.|||+|..|.++|+.+..++.  +++++|
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D   33 (142)
T d1y6ja1           3 KVAIIGAGFVGASAAFTMALRQTANELVLID   33 (142)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCSSEEEEEC
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEEe
Confidence            79999999999999999999986  799999

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.71  E-value=0.018  Score=42.97  Aligned_cols=31  Identities=26%  Similarity=0.333  Sum_probs=28.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      +..|+|+|+|+.|+.++..+...|. +|+++|
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d   58 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTD   58 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEE
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCceEEecc
Confidence            3479999999999999999999998 699999

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.66  E-value=0.025  Score=41.80  Aligned_cols=30  Identities=27%  Similarity=0.380  Sum_probs=27.9

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      .+|.|||+|.+|..+|+.|...|.  +++++|
T Consensus        20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D   51 (159)
T d2ldxa1          20 CKITVVGVGDVGMACAISILLKGLADELALVD   51 (159)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTSCSEEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEe
Confidence            489999999999999999999985  799999

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=94.64  E-value=0.025  Score=39.43  Aligned_cols=30  Identities=17%  Similarity=0.286  Sum_probs=27.9

Q ss_pred             ccEEEECCCh-----------HHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGS-----------GGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~-----------aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|+|||+||           ++..|+..|++.|++++++.
T Consensus         5 kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN   45 (121)
T d1a9xa4           5 EKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVN   45 (121)
T ss_dssp             CEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEe
Confidence            4899999997           88899999999999999998

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.57  E-value=0.019  Score=42.74  Aligned_cols=32  Identities=13%  Similarity=0.150  Sum_probs=28.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+..|+|+|+|+.|+.++..++..|.+|++++
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~   58 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVIS   58 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccc
Confidence            34479999999999999998888999999999

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.56  E-value=0.02  Score=42.34  Aligned_cols=31  Identities=29%  Similarity=0.245  Sum_probs=28.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..|+|+|+|+.|+.++..++..|.+|++++
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~   58 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAMGLHVAAID   58 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEeeccccHHHHHHHHHHcCCccceec
Confidence            4479999999999999999999999999999

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=94.53  E-value=0.025  Score=39.88  Aligned_cols=32  Identities=19%  Similarity=0.261  Sum_probs=29.1

Q ss_pred             ccccEEEECCCh-----------HHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGS-----------GGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~-----------aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ...+|+|||+||           ++..++..|++.|++++++.
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN   48 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVN   48 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEEC
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEec
Confidence            345899999998           88999999999999999999

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=94.50  E-value=0.025  Score=41.19  Aligned_cols=30  Identities=17%  Similarity=0.242  Sum_probs=28.7

Q ss_pred             ccEEEEC-CChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIG-GGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIG-gG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|.||| .|.-|...|..|.+.|++|.++|
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d   40 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYPISILD   40 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEEC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCCcEecc
Confidence            4899999 69999999999999999999999

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.39  E-value=0.035  Score=38.29  Aligned_cols=31  Identities=23%  Similarity=0.325  Sum_probs=29.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..+|.|+|||.-|-+.|..+.+.|+++.++|
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d   41 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVD   41 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEc
Confidence            3579999999999999999999999999999

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.25  E-value=0.021  Score=41.41  Aligned_cols=29  Identities=21%  Similarity=0.375  Sum_probs=26.5

Q ss_pred             cEEEECC-ChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         117 DLCVIGG-GSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       117 dVvVIGg-G~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      +|+|||| |.+|.++|+.|+..|.  +++++|
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiD   33 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYD   33 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEE
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEe
Confidence            6999996 9999999999999985  699999

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=94.18  E-value=0.024  Score=40.93  Aligned_cols=29  Identities=31%  Similarity=0.531  Sum_probs=27.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--CcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMN--KKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE  145 (296)
                      +|.|||+|..|...|+.|+..+  .+++++|
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~D   32 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLD   32 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEec
Confidence            6999999999999999999988  4899999

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=93.89  E-value=0.034  Score=41.22  Aligned_cols=32  Identities=28%  Similarity=0.277  Sum_probs=28.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+..|+|+|+|+.|+.++..++..|.++++++
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~   61 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFT   61 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhc
Confidence            34589999999999999999999999999998

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.88  E-value=0.024  Score=41.01  Aligned_cols=29  Identities=28%  Similarity=0.350  Sum_probs=26.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      +|.|||+|.+|.++|+.++..|.  +++++|
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~D   32 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVD   32 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEe
Confidence            69999999999999999998874  699999

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=93.88  E-value=0.03  Score=42.06  Aligned_cols=32  Identities=19%  Similarity=0.252  Sum_probs=28.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+..|+|+|+|+.|+.+...+...|. +|+++|
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~   60 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIA   60 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEE
T ss_pred             CCCEEEEECCCccchhheecccccccccccccc
Confidence            34589999999999999999999997 799999

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.84  E-value=0.031  Score=40.53  Aligned_cols=29  Identities=24%  Similarity=0.297  Sum_probs=26.8

Q ss_pred             cEEEECC-ChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         117 DLCVIGG-GSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       117 dVvVIGg-G~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      +|.|||| |..|.++|+.|+..|.  +++++|
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D   33 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIG   33 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEE
T ss_pred             EEEEECCCChHHHHHHHHHHhCCccccccccc
Confidence            6999996 9999999999999984  899999

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.74  E-value=0.027  Score=40.63  Aligned_cols=29  Identities=24%  Similarity=0.346  Sum_probs=26.6

Q ss_pred             cEEEECCChHHHHHHHHHHhCC--CcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMN--KKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G--~~V~iiE  145 (296)
                      +|.|||+|.+|..+|+.++.++  .+++++|
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D   32 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLID   32 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEe
Confidence            6999999999999999999887  4799999

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.69  E-value=0.035  Score=41.61  Aligned_cols=29  Identities=17%  Similarity=0.319  Sum_probs=27.3

Q ss_pred             cEEEE-CCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVI-GGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVI-GgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|| |+|.-|...|..|++.|++|++..
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~   31 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGS   31 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEE
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEE
Confidence            58999 669999999999999999999999

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=93.58  E-value=0.039  Score=41.25  Aligned_cols=32  Identities=19%  Similarity=0.207  Sum_probs=28.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+..|+|+|+|+.|+.++..++..|. +|+++|
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d   59 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVG   59 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEEC
T ss_pred             CCCEEEEEcCCcchhhhhhhhhccccccccccc
Confidence            34489999999999999999999996 789998

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=93.42  E-value=0.046  Score=39.75  Aligned_cols=29  Identities=14%  Similarity=0.172  Sum_probs=28.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .++|+|.|..|...+..|.+.|.+|+++|
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId   33 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVIS   33 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEe
Confidence            69999999999999999999999999999

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=93.39  E-value=0.046  Score=40.61  Aligned_cols=32  Identities=16%  Similarity=0.226  Sum_probs=29.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+.+|+|+|+|-++-++++.|.+.|.++.|+.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~n   48 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITN   48 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccceEEEecc
Confidence            34589999999999999999999999999998

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=93.36  E-value=0.05  Score=40.63  Aligned_cols=29  Identities=21%  Similarity=0.230  Sum_probs=28.5

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|-|||-|..|...|.+|.++|++|.+++
T Consensus         4 nIg~IGlG~MG~~mA~~L~~~G~~V~v~d   32 (176)
T d2pgda2           4 DIALIGLAVMGQNLILNMNDHGFVVCAFN   32 (176)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred             cEEEEeEhHHHHHHHHHHHHCCCeEEEEc
Confidence            79999999999999999999999999999

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.29  E-value=0.047  Score=41.61  Aligned_cols=32  Identities=28%  Similarity=0.310  Sum_probs=27.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+..|+|+|+|+.|+.++..++..|. +|+++|
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d   57 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGD   57 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeec
Confidence            34489999999999999999988876 688888

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.07  E-value=0.05  Score=39.62  Aligned_cols=30  Identities=30%  Similarity=0.371  Sum_probs=26.8

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+|.|||+|.+|.++|+.|.+.+. +++++|
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~D   34 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFD   34 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEe
Confidence            379999999999999998888874 799999

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.00  E-value=0.04  Score=35.24  Aligned_cols=29  Identities=21%  Similarity=0.365  Sum_probs=28.2

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .|.|+|||.=|-+.+....+.|++|.+++
T Consensus         3 ~vgIlG~GQLgrMl~~Aa~~LG~~v~vld   31 (78)
T d3etja2           3 QVCVLGNGQLGRMLRQAGEPLGIAVWPVG   31 (78)
T ss_dssp             EEEEEBCSHHHHHHHHHHGGGTEEEEEEC
T ss_pred             EEEEEcCCHHHHHHHHHHHHcCCEEEEEc
Confidence            68999999999999999999999999999

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.80  E-value=0.055  Score=39.77  Aligned_cols=31  Identities=26%  Similarity=0.216  Sum_probs=28.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..|+|+|+|+.|+.++..+...|.+|++++
T Consensus        28 g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~   58 (168)
T d1rjwa2          28 GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVD   58 (168)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCEEEEEC
T ss_pred             CCEEEEeecccchhhhhHHHhcCCCeEeccC
Confidence            3479999999999999999999999999998

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.77  E-value=0.057  Score=39.63  Aligned_cols=29  Identities=21%  Similarity=0.212  Sum_probs=28.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|-|||-|..|...|..|+++|++|.+++
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d   30 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSD   30 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEEC
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEe
Confidence            58999999999999999999999999999

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=92.74  E-value=0.045  Score=40.57  Aligned_cols=32  Identities=13%  Similarity=0.171  Sum_probs=29.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+.+|+|+|+|-++-++++.|.+.|. ++.|+.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~n   48 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYA   48 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEEC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEec
Confidence            34589999999999999999999996 799998

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.74  E-value=0.055  Score=40.47  Aligned_cols=31  Identities=23%  Similarity=0.261  Sum_probs=28.1

Q ss_pred             cccEEEECCChHHHHHHHHHHhCC-CcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMN-KKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE  145 (296)
                      +.-|+|+|+|+.|+.+...++..| .+|+++|
T Consensus        30 g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd   61 (176)
T d1d1ta2          30 GSTCVVFGLGGVGLSVIMGCKSAGASRIIGID   61 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceEEEec
Confidence            346999999999999999999999 5799999

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=92.56  E-value=0.066  Score=38.57  Aligned_cols=29  Identities=28%  Similarity=0.447  Sum_probs=26.5

Q ss_pred             cEEEEC-CChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         117 DLCVIG-GGSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       117 dVvVIG-gG~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      +|.||| +|.+|.++|+.+..++.  +++++|
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~D   33 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVD   33 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEe
Confidence            699999 69999999999999985  699998

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=92.54  E-value=0.072  Score=39.73  Aligned_cols=32  Identities=22%  Similarity=0.199  Sum_probs=27.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCc-EEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKK-VALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~-V~iiE  145 (296)
                      .+..|+|+|+|+.|+.++..+...|.+ |++.|
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d   60 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAID   60 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeec
Confidence            344799999999999999999999985 66667

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.36  E-value=0.071  Score=39.17  Aligned_cols=29  Identities=24%  Similarity=0.352  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|-|||-|..|...|.+|.++|++|.++|
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~~v~~~d   31 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGYLLNVFD   31 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEEC
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCCeEEEEE
Confidence            69999999999999999999999999999

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=92.33  E-value=0.049  Score=43.08  Aligned_cols=30  Identities=27%  Similarity=0.371  Sum_probs=28.1

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      ..|+|||+|..|+.+|..|++.|. +++|+|
T Consensus        31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD   61 (247)
T d1jw9b_          31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLD   61 (247)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEEC
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEEC
Confidence            489999999999999999999996 789998

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.21  E-value=0.065  Score=39.88  Aligned_cols=32  Identities=22%  Similarity=0.290  Sum_probs=26.6

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEE-Ee
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVAL-FD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~i-iE  145 (296)
                      .+.+|+|+|+|+.|+.++..+...|.++++ .+
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~   60 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVD   60 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEE
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeec
Confidence            345899999999999999999888987654 45

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=92.18  E-value=0.086  Score=39.24  Aligned_cols=29  Identities=38%  Similarity=0.455  Sum_probs=28.3

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|-|||-|..|...|.+|.+.|++|.+++
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~d   31 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFN   31 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEE
Confidence            68999999999999999999999999999

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.39  E-value=0.11  Score=38.15  Aligned_cols=32  Identities=19%  Similarity=0.198  Sum_probs=30.0

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+..|+|+|-|..|-..|..++..|.+|+++|
T Consensus        23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e   54 (163)
T d1li4a1          23 AGKVAVVAGYGDVGKGCAQALRGFGARVIITE   54 (163)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             cCCEEEEeccccccHHHHHHHHhCCCeeEeee
Confidence            34589999999999999999999999999999

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=91.19  E-value=0.087  Score=38.16  Aligned_cols=29  Identities=21%  Similarity=0.052  Sum_probs=27.8

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|.|||.|..|...|..|++.|++|++++
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~   30 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSL   30 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEc
Confidence            58999999999999999999999999998

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=90.99  E-value=0.097  Score=37.77  Aligned_cols=29  Identities=24%  Similarity=0.481  Sum_probs=24.6

Q ss_pred             cEEEEC-CChHHHHHHHHHHh-C--CCcEEEEe
Q psy7665         117 DLCVIG-GGSGGISAAKEAAS-M--NKKVALFD  145 (296)
Q Consensus       117 dVvVIG-gG~aG~~aA~~l~~-~--G~~V~iiE  145 (296)
                      +|.||| +|.+|.++|+.|+. .  ..++.++|
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D   34 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYD   34 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEec
Confidence            699999 59999999998864 3  46899999

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.83  E-value=0.096  Score=44.96  Aligned_cols=30  Identities=27%  Similarity=0.345  Sum_probs=28.4

Q ss_pred             ccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         116 YDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+|+|||+|-.|++.|..|+..|. +++|+|
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD   68 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALSGFRQIHVID   68 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTTTCCCEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEE
Confidence            479999999999999999999997 799999

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.77  E-value=0.14  Score=37.69  Aligned_cols=29  Identities=28%  Similarity=0.269  Sum_probs=26.4

Q ss_pred             cEEEECCChHHHHHHHHHHhCCC--cEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNK--KVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~--~V~iiE  145 (296)
                      +|.|||.|.-|.+.|..|.+.|.  +|..+|
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D   33 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYD   33 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEE
Confidence            69999999999999999999996  577788

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.93  E-value=0.18  Score=38.16  Aligned_cols=31  Identities=16%  Similarity=0.360  Sum_probs=28.5

Q ss_pred             ccEEEECC-ChHHHHHHHHHHhCCCcEEEEec
Q psy7665         116 YDLCVIGG-GSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       116 ~dVvVIGg-G~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      .+|+|+|| |..|...+.+|.++|++|+++.+
T Consensus         4 kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R   35 (205)
T d1hdoa_           4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVR   35 (205)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEc
Confidence            37999995 99999999999999999999983

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=89.83  E-value=0.18  Score=40.32  Aligned_cols=29  Identities=17%  Similarity=0.309  Sum_probs=27.8

Q ss_pred             cEEEECC-ChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGG-GSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGg-G~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +|+|+|| |..|...+.+|.++|++|+++.
T Consensus         5 KILVtGatG~iG~~l~~~L~~~G~~V~~~~   34 (312)
T d1qyda_           5 RVLIVGGTGYIGKRIVNASISLGHPTYVLF   34 (312)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHTTCCEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEEE
Confidence            6999997 9999999999999999999998

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=89.57  E-value=0.15  Score=37.26  Aligned_cols=32  Identities=25%  Similarity=0.308  Sum_probs=28.3

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+..|+|||+|..|-..+.+|...|. +++|+-
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~n   55 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVAN   55 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEEC
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEc
Confidence            34589999999999999999999997 588887

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=89.54  E-value=0.19  Score=38.32  Aligned_cols=32  Identities=28%  Similarity=0.201  Sum_probs=29.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+..|+|-|-|-+|..+|.+|.+.|.+|++.|
T Consensus        26 ~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d   57 (201)
T d1c1da1          26 DGLTVLVQGLGAVGGSLASLAAEAGAQLLVAD   57 (201)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEec
Confidence            34589999999999999999999999999998

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=89.48  E-value=0.17  Score=37.49  Aligned_cols=32  Identities=19%  Similarity=0.154  Sum_probs=27.7

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      .+..|+|+|+|+.|+.++..++..|. +|+++|
T Consensus        27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d   59 (174)
T d1p0fa2          27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVG   59 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEC
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceeeccC
Confidence            34479999999999999999999996 677887

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=89.34  E-value=0.16  Score=37.58  Aligned_cols=32  Identities=9%  Similarity=0.203  Sum_probs=29.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+..|+|+|+|-++-++++.|.+.+.++.|+.
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~n   48 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLAN   48 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccCceeeecc
Confidence            34589999999999999999999889999999

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=89.32  E-value=0.19  Score=39.79  Aligned_cols=30  Identities=23%  Similarity=0.294  Sum_probs=28.5

Q ss_pred             ccEEEECC-ChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGG-GSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGg-G~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|+|+|| |..|-..+.+|.+.|++|+++.
T Consensus         4 kKILVtGatG~iG~~l~~~L~~~G~~V~~l~   34 (307)
T d1qyca_           4 SRILLIGATGYIGRHVAKASLDLGHPTFLLV   34 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEE
Confidence            47999997 9999999999999999999999

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=89.26  E-value=0.073  Score=37.43  Aligned_cols=32  Identities=25%  Similarity=0.434  Sum_probs=24.5

Q ss_pred             ccccEEEECCChHHHHHHHHHHh-CCCc-EEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAAS-MNKK-VALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~-~G~~-V~iiE  145 (296)
                      ..+.|+|+|||-+|.+.+.++.+ .+++ |..+|
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiD   35 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFD   35 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEE
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEe
Confidence            35689999999999998887654 3566 46667

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=89.06  E-value=0.18  Score=36.86  Aligned_cols=31  Identities=16%  Similarity=0.236  Sum_probs=29.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..++|+|=|..|--+|.+|+..|.+|+|.|
T Consensus        23 Gk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E   53 (163)
T d1v8ba1          23 GKIVVICGYGDVGKGCASSMKGLGARVYITE   53 (163)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHTCEEEEEC
T ss_pred             CCEEEEecccccchhHHHHHHhCCCEEEEEe
Confidence            4589999999999999999999999999999

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=88.94  E-value=0.26  Score=37.01  Aligned_cols=32  Identities=22%  Similarity=0.224  Sum_probs=28.7

Q ss_pred             ccccEEEEC-CChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIG-GGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIG-gG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+..|+|.| +|-.|..+|..|+++|.+|+++.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~   54 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCG   54 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhcc
Confidence            345789999 58899999999999999999999

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=88.61  E-value=0.22  Score=36.69  Aligned_cols=31  Identities=23%  Similarity=0.250  Sum_probs=25.9

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      +..|+|+|+|+.|+.++..++..|. .|++++
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~   64 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALD   64 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCccccccc
Confidence            3479999999999999999888885 566677

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=88.36  E-value=0.28  Score=36.00  Aligned_cols=31  Identities=23%  Similarity=0.311  Sum_probs=26.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      +..|+|+|+|+.|+.++..++..|. +|++++
T Consensus        29 g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~   60 (175)
T d1cdoa2          29 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVD   60 (175)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             CCEEEEEecCCccchHHHHHHHHhhchheeec
Confidence            3469999999999999999999876 577777

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=87.83  E-value=0.034  Score=42.76  Aligned_cols=67  Identities=12%  Similarity=0.084  Sum_probs=41.5

Q ss_pred             cceeeeeeeccccCCccchhhhcc----------CcceeeccccCCCCccccEEEECCChHHHHHHHHHHhCCCcEE
Q psy7665          76 HTPYLVLAKARFLLPTLECQEVYH----------DGRFYDYLDNNFQTYDYDLCVIGGGSGGISAAKEAASMNKKVA  142 (296)
Q Consensus        76 ~~p~~v~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~dVvVIGgG~aG~~aA~~l~~~G~~V~  142 (296)
                      ...+.+++++|+.|..++.+..+.          ..+..-.++...++....|.|||+|..|++.|..+.+.|.+|+
T Consensus       128 ~~~~~~iiatG~~p~ip~ip~~~~l~l~~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~ela~~~~~~G~~v~  204 (217)
T d1gesa1         128 ITADHILIATGGRPSHPREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLS  204 (217)
T ss_dssp             EEEEEEEECCCEEECCCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSCCCHHHHHHHHHHHH
T ss_pred             eeeeeeeeecCccccCCCCCCcCCcccccccEEEcCCccEeeCchhccCCCcEEEECCCccHHHHHHHHHHHHHHHH
Confidence            456788899987765554432211          1111111122222233479999999999999999999888773

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=87.23  E-value=0.3  Score=35.16  Aligned_cols=29  Identities=14%  Similarity=0.180  Sum_probs=27.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ++.+||+|.-|.+.|..|.+.|+++++.+
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~   30 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISG   30 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEEC
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEc
Confidence            58999999999999999999999999999

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.00  E-value=0.29  Score=36.26  Aligned_cols=31  Identities=23%  Similarity=0.350  Sum_probs=27.1

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+.+|+|+|+|-++-++++.|.+.| ++.|+.
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~~-~i~I~n   47 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKDN-NIIIAN   47 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS-EEEEEC
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccc-ceeeeh
Confidence            3458999999999999999998777 899998

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=86.82  E-value=0.32  Score=32.17  Aligned_cols=31  Identities=23%  Similarity=0.240  Sum_probs=28.5

Q ss_pred             cccEEEECCChHHHHH-HHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISA-AKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~a-A~~l~~~G~~V~iiE  145 (296)
                      ..++-+||-|-+|+++ |..|.++|++|+-.|
T Consensus         8 ~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD   39 (96)
T d1p3da1           8 VQQIHFIGIGGAGMSGIAEILLNEGYQISGSD   39 (96)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHHTCEEEEEE
T ss_pred             CCEEEEEEECHHHHHHHHHHHHhCCCEEEEEe
Confidence            4479999999999988 999999999999999

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=86.54  E-value=0.25  Score=38.88  Aligned_cols=30  Identities=23%  Similarity=0.287  Sum_probs=28.3

Q ss_pred             cEEEECC-ChHHHHHHHHHHhCCCcEEEEec
Q psy7665         117 DLCVIGG-GSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       117 dVvVIGg-G~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      +|+|.|| |..|-..+.+|.++|++|+.+++
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r   33 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDV   33 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeec
Confidence            6999998 99999999999999999999983

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=86.09  E-value=0.37  Score=35.18  Aligned_cols=32  Identities=25%  Similarity=0.287  Sum_probs=26.9

Q ss_pred             ccccEEEECC-ChHHHHHHHHHHhCC-CcEEEEe
Q psy7665         114 YDYDLCVIGG-GSGGISAAKEAASMN-KKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGg-G~aG~~aA~~l~~~G-~~V~iiE  145 (296)
                      .+..|+|+|+ |+.|+.++..+...| .+|++++
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~   60 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVD   60 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEE
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccc
Confidence            3447999995 999999999888888 5788888

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=85.96  E-value=0.47  Score=34.82  Aligned_cols=31  Identities=19%  Similarity=0.239  Sum_probs=27.0

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      +..|+|+|+|..|+.++..++..|. +|++++
T Consensus        29 GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~   60 (176)
T d2jhfa2          29 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVD   60 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             CCEEEEECCCCcHHHHHHHHHHcCCceEEeec
Confidence            3469999999999999999999985 778887

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=85.81  E-value=0.46  Score=35.26  Aligned_cols=31  Identities=16%  Similarity=0.393  Sum_probs=27.8

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      +.+|+|+|+|-+|-++++.|.+.|. +++|+.
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~~i~i~n   49 (182)
T d1vi2a1          18 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFN   49 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHhhcCCceEeeec
Confidence            4589999999999999999999986 688888

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.42  E-value=0.52  Score=34.51  Aligned_cols=31  Identities=23%  Similarity=0.234  Sum_probs=27.3

Q ss_pred             cccEEEECC-ChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGG-GSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGg-G~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..|+|.|| |+.|+.+...+...|.+|+++.
T Consensus        29 g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~   60 (174)
T d1yb5a2          29 GESVLVHGASGGVGLAACQIARAYGLKILGTA   60 (174)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEEeccccccccccccccccCccccccc
Confidence            347999996 9999999988888999998887

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=85.36  E-value=0.41  Score=35.01  Aligned_cols=31  Identities=16%  Similarity=0.146  Sum_probs=25.7

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCc-EEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKK-VALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~-V~iiE  145 (296)
                      +..|+|+|+|..|+.++..++..|.+ |++.+
T Consensus        29 G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~   60 (176)
T d2fzwa2          29 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVD   60 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEEC
T ss_pred             CCEEEEecchhHHHHHHHHHHHHhcCceEEEc
Confidence            34799999999999999999999965 55555

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=85.32  E-value=0.42  Score=34.26  Aligned_cols=29  Identities=14%  Similarity=0.319  Sum_probs=26.7

Q ss_pred             cEEEECCChHHHHHHHHHHhCC-CcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMN-KKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G-~~V~iiE  145 (296)
                      +|.+||+|.-|...|..|.+.| +++.+++
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~   31 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIAN   31 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEEC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEe
Confidence            6899999999999999988877 8999999

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.19  E-value=0.28  Score=43.16  Aligned_cols=31  Identities=16%  Similarity=0.302  Sum_probs=28.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCC-cEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNK-KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~-~V~iiE  145 (296)
                      ..+|+|||+|..|+++|..|+..|. +++|+|
T Consensus        25 ~s~VlvvG~gglG~Ei~knLvl~GVg~itivD   56 (529)
T d1yova1          25 SAHVCLINATATGTEILKNLVLPGIGSFTIID   56 (529)
T ss_dssp             HCEEEECCCSHHHHHHHHHHHTTTCSEEEEEC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhcCCEEEEEc
Confidence            3489999999999999999999995 799998

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=84.70  E-value=0.49  Score=38.73  Aligned_cols=30  Identities=27%  Similarity=0.359  Sum_probs=28.2

Q ss_pred             ccEEEECC-ChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGG-GSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGg-G~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..|+|+|| |..|...+.+|.++|++|.++-
T Consensus         4 ktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~   34 (350)
T d1xgka_           4 KTIAVVGATGRQGASLIRVAAAVGHHVRAQV   34 (350)
T ss_dssp             CCEEEESTTSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCCeEEEEE
Confidence            47999996 9999999999999999999997

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.53  E-value=0.26  Score=35.70  Aligned_cols=30  Identities=20%  Similarity=0.180  Sum_probs=24.2

Q ss_pred             ccEEEECC-ChHHHHHHHHHHhCCC-------cEEEEe
Q psy7665         116 YDLCVIGG-GSGGISAAKEAASMNK-------KVALFD  145 (296)
Q Consensus       116 ~dVvVIGg-G~aG~~aA~~l~~~G~-------~V~iiE  145 (296)
                      .+|.|||| |.+|..+|+.|+..+.       ...++|
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d   41 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLD   41 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEEC
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEec
Confidence            48999996 9999999999987542       356666

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=83.84  E-value=0.62  Score=37.97  Aligned_cols=32  Identities=19%  Similarity=0.134  Sum_probs=29.0

Q ss_pred             cccEEEEC-CChHHHHHHHHHHhCCCcEEEEec
Q psy7665         115 DYDLCVIG-GGSGGISAAKEAASMNKKVALFDF  146 (296)
Q Consensus       115 ~~dVvVIG-gG~aG~~aA~~l~~~G~~V~iiE~  146 (296)
                      +.+|+|.| +|..|...+.+|.++|++|.++++
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r   40 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSL   40 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC
Confidence            34899999 689999999999999999999993

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=83.35  E-value=0.65  Score=34.48  Aligned_cols=31  Identities=26%  Similarity=0.327  Sum_probs=29.4

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..|.|||.|..|-..|..+...|.+|..++
T Consensus        42 gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d   72 (181)
T d1qp8a1          42 GEKVAVLGLGEIGTRVGKILAALGAQVRGFS   72 (181)
T ss_dssp             TCEEEEESCSTHHHHHHHHHHHTTCEEEEEC
T ss_pred             CceEEEeccccccccceeeeecccccccccc
Confidence            4579999999999999999999999999999

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=82.95  E-value=0.31  Score=35.21  Aligned_cols=23  Identities=26%  Similarity=0.234  Sum_probs=20.8

Q ss_pred             ccEEEECC-ChHHHHHHHHHHhCC
Q psy7665         116 YDLCVIGG-GSGGISAAKEAASMN  138 (296)
Q Consensus       116 ~dVvVIGg-G~aG~~aA~~l~~~G  138 (296)
                      .+|.|||| |..|..+|+.|+..+
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~   28 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGE   28 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcc
Confidence            38999997 999999999999875

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=82.90  E-value=1.5  Score=34.04  Aligned_cols=32  Identities=22%  Similarity=0.127  Sum_probs=29.2

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+..|+|=|-|.+|..+|..|.+.|.+|+.+.
T Consensus        30 ~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vs   61 (242)
T d1v9la1          30 EGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVS   61 (242)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEee
Confidence            44589999999999999999999999998777

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=82.23  E-value=0.75  Score=34.64  Aligned_cols=32  Identities=25%  Similarity=0.284  Sum_probs=29.8

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+..|.|||-|..|...|..|...|.+|..++
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d   73 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGAKVITYD   73 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             cCCeEEEecccccchhHHHhHhhhcccccccC
Confidence            34589999999999999999999999999999

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=81.46  E-value=0.66  Score=33.90  Aligned_cols=31  Identities=23%  Similarity=0.215  Sum_probs=26.7

Q ss_pred             cccEEEECC-ChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGG-GSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGg-G~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..|+|.|| |+.|+.+...+...|.+|+.++
T Consensus        28 g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~   59 (171)
T d1iz0a2          28 GEKVLVQAAAGALGTAAVQVARAMGLRVLAAA   59 (171)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEEeccccchhhhhhhhccccccccccc
Confidence            336888896 9999999988888999999888

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.40  E-value=0.79  Score=37.57  Aligned_cols=30  Identities=20%  Similarity=0.224  Sum_probs=28.1

Q ss_pred             ccEEEEC-CChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIG-GGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIG-gG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|+|.| .|..|...+.+|.++|++|++++
T Consensus        16 MKILVTGgsGfIGs~lv~~L~~~g~~V~~~d   46 (363)
T d2c5aa1          16 LKISITGAGGFIASHIARRLKHEGHYVIASD   46 (363)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEe
Confidence            3799999 79999999999999999999998

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=81.27  E-value=0.84  Score=34.37  Aligned_cols=31  Identities=29%  Similarity=0.342  Sum_probs=29.3

Q ss_pred             cccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         115 DYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       115 ~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      +..|.|||.|..|-..|..|...|.+|..++
T Consensus        45 ~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d   75 (199)
T d1dxya1          45 QQTVGVMGTGHIGQVAIKLFKGFGAKVIAYD   75 (199)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             ceeeeeeecccccccccccccccceeeeccC
Confidence            4579999999999999999999999999999

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=81.13  E-value=0.85  Score=33.62  Aligned_cols=31  Identities=19%  Similarity=0.098  Sum_probs=24.7

Q ss_pred             cccEEEECC-ChHHHHHHHHHHhCCC-------cEEEEe
Q psy7665         115 DYDLCVIGG-GSGGISAAKEAASMNK-------KVALFD  145 (296)
Q Consensus       115 ~~dVvVIGg-G~aG~~aA~~l~~~G~-------~V~iiE  145 (296)
                      ..+|.|+|| |..|..+++.|++...       ...++|
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~d   62 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLG   62 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEEC
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEec
Confidence            348999996 9999999999998532       456666

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.99  E-value=0.75  Score=38.22  Aligned_cols=30  Identities=33%  Similarity=0.470  Sum_probs=27.4

Q ss_pred             ccEEEECC-ChHHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGG-GSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGg-G~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+|+|.|| |..|...+.+|.++|++|+++|
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            37999985 8899999999999999999997

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=80.93  E-value=0.44  Score=33.05  Aligned_cols=27  Identities=11%  Similarity=0.246  Sum_probs=24.1

Q ss_pred             cEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         117 DLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       117 dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .++|+|.|..|...+..|.  |.+++++|
T Consensus         2 HivI~G~g~~g~~l~~~L~--~~~i~vi~   28 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--GSEVFVLA   28 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--GGGEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHc--CCCCEEEE
Confidence            5899999999999999984  66788898

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=80.25  E-value=0.95  Score=34.94  Aligned_cols=32  Identities=19%  Similarity=0.184  Sum_probs=29.9

Q ss_pred             ccccEEEECCChHHHHHHHHHHhCCCcEEEEe
Q psy7665         114 YDYDLCVIGGGSGGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       114 ~~~dVvVIGgG~aG~~aA~~l~~~G~~V~iiE  145 (296)
                      .+..|+|-|-|-+|..+|.+|.+.|.++++.+
T Consensus        38 ~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d   69 (230)
T d1leha1          38 EGLAVSVQGLGNVAKALCKKLNTEGAKLVVTD   69 (230)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEeec
Confidence            45689999999999999999999999999998

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.14  E-value=0.92  Score=34.94  Aligned_cols=30  Identities=27%  Similarity=0.208  Sum_probs=27.0

Q ss_pred             ccEEEECCCh-HHHHHHHHHHhCCCcEEEEe
Q psy7665         116 YDLCVIGGGS-GGISAAKEAASMNKKVALFD  145 (296)
Q Consensus       116 ~dVvVIGgG~-aG~~aA~~l~~~G~~V~iiE  145 (296)
                      ..|+|.||+- -|.++|..|+++|.+|.+++
T Consensus         3 K~vlITGas~GIG~a~a~~l~~~G~~V~~~~   33 (236)
T d1dhra_           3 RRVLVYGGRGALGSRCVQAFRARNWWVASID   33 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEe
Confidence            4799999855 79999999999999999998