Psyllid ID: psy7710

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470---
Protein Sequence
MSSSQSPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFGVKAIHSPHTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPEMVDSMNEYEF
Secondary Structure (PSIPRED)
ccccccccEEEEEEEcccEEEccHHHHHHHHcccccccHHHHcccccccccccccccccEEEEcccHHHHHHHHHHHHcccccEEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccHHHHHHHHHHHHHcccccEEEccHHHHHHHcccccEEEEEEccccEEEcHHHHHHHHHHHHHHcccEEEcccEEEEEEEcccEEEEEEccccEEEEcEEEEcccccHHHHHHHccccccccEEcccEEEEEEcccccccccccEEccccccccccEEEEEcccccEEEEccccEEcccccccccccccHHHHHHHHccccHHHHccccccccHHHHHHHHcHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEcEEEEcccHHHHHHHHHHHccccccccccccccccccccccccccccEcEEEEccEHHHHHHHHHHHHHccccEEEEEEccccHHHHcccccccEEEEEEEEccccHHHHHHHHHHHHHHHHHHHccccccHccEEEEEccHHHHHHHHHHHHHHHcccccEEEccHHHHHHHccccEEEEEEEccccccccHHHHHHHHHHHHHHcccEEEEcEEEEEEEEccccEEEEEccccEEEEEEEEEcccHHHHHHHHHcccccccEEEEccccEEEccHHHccHEcccEcccccccccEEEEEEcccccccEEEcHHHHHHHHHcccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccccccEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHcccEEEEEEEEcccccccccccccccccc
Coil and Loop (DISEMBL)
msssqsptlyDMVVVGGGIVGVATARELklkypkmktCLVEKEKEffsmsssqspalyDVVVVGGGIVGVATARELKLNYPKMKICLVEKEkelgmhqtghnsgvvhagiyykpgtlkAKLCVEGMNLAYeyfdkrnipykkCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKtiepyckgvkaihspntgivdWGLVTRVMGEEFCELGGEIRLNQQVEsfkenpesvtistkqgdhlESSYALVCAGLQADEMALksgcslepaivpfrgeylllnpakqhlvrgniypvpdpnfpflgvhftprmdgsvwlgpnavlafkkegyrwrdfSVRELFStlrypgfwrlGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIeagdiqrgpsgvraqalsssgdlvddfgvkaihsphtgivdWGLVTRVMGEEFCELGGEIRLNQQvesfkenpemvdsmneyef
Flexible Loop (DISEMBL)
msssqsptlyDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFfsmsssqspALYDVVVVGGGIVGVATarelklnypKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIepyckgvkaihspntgiVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELfstlrypgfwrlGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEagdiqrgpsGVRAQALSSSGDLVDDFGVKAihsphtgivdwGLVTRVMGEEFCELGGEirlnqqvesfkenpemvdsmneyef
Low Complexity Region (SEG)
MSSSQSPTLYDMvvvgggivgvATARELKLKYPKMKTCLVEKEKEFFsmsssqsPALYDvvvvgggivgvATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFGVKAIHSPHTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPEMVDSMNEYEF
Disordered region (IsUnstruct)
********LYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFF*******PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQ*********************LESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDI****************DLVDDFGVKAIHSPHTGIVDWGLVTRVMGEEFCELGGEIRLN*********************
Disordered Region (DISOPRED)
*****SP*LYDMVVVGGGIVGVATARELK***************************LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFGVKAIHSPHTGIVDWGLVTRVMGEEFCELGGEIRLNQQVE*****************
Disordered Region (DISEMBL)
MSSSQSPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVE**************QGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFGVKAIHSPHTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPEMVDSMNEYEF
Disordered Region (DISPRO)
*****SPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK*F**M**SQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFGVKAIHSPHTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFK**************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSSQSPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFGVKAIHSPHTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPEMVDSMNEYEF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	473	2.2.26 [Sep-21-2011]
A7SMW7	456	L-2-hydroxyglutarate dehy	N/A	N/A	0.758	0.787	0.552	1e-117
A8X2R1	434	L-2-hydroxyglutarate dehy	N/A	N/A	0.756	0.824	0.546	1e-116
Q9N4Z0	433	L-2-hydroxyglutarate dehy	yes	N/A	0.758	0.829	0.532	1e-114
A7MBI3	463	L-2-hydroxyglutarate dehy	yes	N/A	0.733	0.749	0.501	1e-101
Q9H9P8	463	L-2-hydroxyglutarate dehy	yes	N/A	0.775	0.792	0.514	1e-101
Q91YP0	464	L-2-hydroxyglutarate dehy	yes	N/A	0.733	0.747	0.504	1e-101
Q55GI5	446	L-2-hydroxyglutarate dehy	yes	N/A	0.809	0.858	0.422	1e-92
Q5R9N7	419	L-2-hydroxyglutarate dehy	yes	N/A	0.682	0.770	0.472	2e-88
P37339	422	L-2-hydroxyglutarate oxid	N/A	N/A	0.754	0.845	0.435	4e-75
P75063	384	Uncharacterized protein M	yes	N/A	0.577	0.710	0.297	7e-20

>sp|A7SMW7|L2HDH_NEMVE L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Nematostella vectensis GN=v1g172254 PE=3 SV=1

 Score =  422 bits (1085), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 206/373 (55%), Positives = 262/373 (70%), Gaps = 14/373 (3%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
           YDV +VGGGIVG+ATAREL L +PK+  C++EKEKEL MHQ+GHNSGV+H GIYY PG+L
Sbjct: 40  YDVAIVGGGIVGLATARELILRHPKLTFCVLEKEKELSMHQSGHNSGVIHCGIYYTPGSL 99

Query: 118 KAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPL-HDLYERSIQNNVKDVRLVS 176
           KAKLCV+G++L Y+Y D+ NIPYKKCGKLIVA+ ++  PL ++LYER  +N VKD+ +V 
Sbjct: 100 KAKLCVQGLDLTYQYCDEHNIPYKKCGKLIVAVEDKEIPLLNNLYERGKKNGVKDLTMVD 159

Query: 177 AEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPES 236
              IK IEP+C+G+ AI SPNTGIVDW  V    G++F + GG+I    +V  FK   ES
Sbjct: 160 KRGIKEIEPHCEGMFAIVSPNTGIVDWAQVALAYGDDFRKGGGDIFTGYEVTDFKCASES 219

Query: 237 -------------VTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYL 283
                        VT+ +     ++  Y + C GL +D +A KSGC+ EP IVPFRG+YL
Sbjct: 220 GKSQEKEAGLTHPVTVFSNNKQTIKCRYVITCGGLYSDRLAEKSGCNREPRIVPFRGDYL 279

Query: 284 LLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVR 343
           +L P K HLV+GNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAF +EGY   D ++R
Sbjct: 280 VLKPEKCHLVKGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFAREGYNLLDINLR 339

Query: 344 ELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRA 403
           +L   L + G  +L  KY  +G  E       + +V +L++YI  + A D+  GPSGVRA
Sbjct: 340 DLADALAFRGLRQLMFKYFSFGVGEYYRGLNHAAQVKQLQKYIPSVTADDVVSGPSGVRA 399

Query: 404 QALSSSGDLVDDF 416
           QAL   G+LVDDF
Sbjct: 400 QALDRDGNLVDDF 412

Nematostella vectensis (taxid: 45351)
EC: 1EC: .EC: 1EC: .EC: 9EC: 9EC: .EC: 2

>sp|A8X2R1|L2HDH_CAEBR L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Caenorhabditis briggsae GN=CBG06643 PE=3 SV=2

 Score =  419 bits (1077), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/366 (54%), Positives = 268/366 (73%), Gaps = 8/366 (2%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
           YD+V+VGGGIVG ATAR+L +  P +KI LVEKEKEL +HQ+GHNSGV+HAGIYY PG+L
Sbjct: 26  YDLVIVGGGIVGCATARQLLIEKPNLKIALVEKEKELAVHQSGHNSGVIHAGIYYTPGSL 85

Query: 118 KAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEP-LHDLYERSIQNNVKDVRLVS 176
           KAKLCVEG++L+YE+FDK  IPYKK GKLIVA+ ++  P L  L+ R+  N  +D+ ++ 
Sbjct: 86  KAKLCVEGLDLSYEFFDKEKIPYKKTGKLIVAVEQEEVPRLDALFARAQTNGCRDIEMID 145

Query: 177 AEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKEN--- 233
           ++ I  IEP+CKG+KA+ SP+TGIVDWG VT+  GE+F + GG+I  +  +E  ++N   
Sbjct: 146 SKRITDIEPHCKGLKALWSPHTGIVDWGYVTKKFGEDFEKRGGKIYTSYPLEKIEDNLKD 205

Query: 234 ---PESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQ 290
              P  V+      D  E+   + CAGLQ+D +A  SGCS +P IVPFRGEYLLL P K+
Sbjct: 206 SNYPIRVSSDPSYAD-FETKNLITCAGLQSDRVAALSGCSTDPKIVPFRGEYLLLKPEKR 264

Query: 291 HLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLR 350
           HLV+ NIYPVPDP FPFLGVHFTPRM+G +WLGPNAVLA+K+EGY +   S  +L  +L 
Sbjct: 265 HLVKTNIYPVPDPRFPFLGVHFTPRMNGDIWLGPNAVLAYKREGYSYFSISPSDLLESLS 324

Query: 351 YPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSG 410
           Y G  +L  K+  +G KE+    + + +V +L+++I E++  D+ RGPSGVRAQA+ S+G
Sbjct: 325 YSGMQKLVKKHFTFGIKELYRGIWIAAQVKQLQRFIPELKYSDVTRGPSGVRAQAMDSAG 384

Query: 411 DLVDDF 416
           +LVDDF
Sbjct: 385 NLVDDF 390

Caenorhabditis briggsae (taxid: 6238)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 2

>sp|Q9N4Z0|L2HDH_CAEEL L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=Y45G12B.3 PE=3 SV=2

 Score =  412 bits (1059), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 194/364 (53%), Positives = 268/364 (73%), Gaps = 5/364 (1%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
           YD+V+VGGGIVG ATAR+L +  P++K+ L+EKEKEL +HQ+GHNSGV+HAGIYY PG+L
Sbjct: 26  YDLVIVGGGIVGCATARQLLIEKPQLKVALIEKEKELAVHQSGHNSGVIHAGIYYTPGSL 85

Query: 118 KAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALN-EQLEPLHDLYERSIQNNVKDVRLVS 176
           KAKLCVEG++L+YE+FDK  +PYKK GKLIVA+  E++  L  L+ R+  N  +D+ ++ 
Sbjct: 86  KAKLCVEGLDLSYEFFDKEKVPYKKTGKLIVAVEPEEVPRLDALFSRAQTNGCRDIEMID 145

Query: 177 AEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPE- 235
           + +I  +EP+C+G+KA+ SP+TGIVDWG VT+  GE+F + GG+I  +  +E   +N + 
Sbjct: 146 SSKITELEPHCRGLKALWSPHTGIVDWGYVTKRFGEDFEKRGGKIYTSYPLEKISDNHDP 205

Query: 236 SVTISTKQGDHL---ESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHL 292
              I    G  L   E+   + CAGLQ+D +A  SGCS +P IVPFRGEYLLL P K+HL
Sbjct: 206 GYPIRVSSGPALAEFETKNLITCAGLQSDRVAALSGCSTDPKIVPFRGEYLLLKPEKRHL 265

Query: 293 VRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYP 352
           V+ NIYPVPDP FPFLGVHFTPRM+G +WLGPNAVLA+K+EGY +   S  +L  +L Y 
Sbjct: 266 VKTNIYPVPDPRFPFLGVHFTPRMNGDIWLGPNAVLAYKREGYSYFSISPSDLLESLSYS 325

Query: 353 GFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDL 412
           G  +L  K+  +G KE+    + + +V +L+++I E++  D+ RGP+GVRAQA+ S+G+L
Sbjct: 326 GMQKLVKKHFTFGIKELYRGVWIAAQVKQLQRFIPELKLSDVTRGPAGVRAQAMDSAGNL 385

Query: 413 VDDF 416
           VDDF
Sbjct: 386 VDDF 389

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 2

>sp|A7MBI3|L2HDH_BOVIN L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Bos taurus GN=L2HGDH PE=2 SV=1

 Score =  370 bits (950), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/359 (50%), Positives = 243/359 (67%), Gaps = 12/359 (3%)

Query: 70  VATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLA 129
           +A+AR L L +P + I ++EKEK L +HQTGHNSGV+H+GIYYKP +LKAKLCV+G  L 
Sbjct: 61  LASARALILRHPALSIGVLEKEKNLAVHQTGHNSGVIHSGIYYKPESLKAKLCVQGAALI 120

Query: 130 YEYFDKRNIPYKKCGKLIVAL-NEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCK 188
           YEY +++ I YK+CGKLIVA+  E++  L  LYER +QN V+ +RL+  E+IK  EPYC+
Sbjct: 121 YEYCNQKGISYKQCGKLIVAVEQEEIPRLQALYERGLQNGVQGLRLIQQEDIKKKEPYCR 180

Query: 189 GVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPES-----------V 237
           G+ AI  P TGIVD+  V     ++F E GG +  N +VE  +   ES           +
Sbjct: 181 GLMAIDCPYTGIVDYRQVAFSFAKDFQEAGGSVLTNFEVEDIEMARESPSRSKDGMKYPI 240

Query: 238 TISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNI 297
            I   +G+ +   Y + CAGL +D ++  SGC+  P IVPFRG+YL+L P K++LV+GNI
Sbjct: 241 VIRNTKGEEVRCQYVVTCAGLYSDRISELSGCNPNPRIVPFRGDYLVLKPEKRYLVKGNI 300

Query: 298 YPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRL 357
           YPVPD  FPFLGVHFTPRMDG++WLGPNA+LAFK+EGYR  DFS R++   +   G  +L
Sbjct: 301 YPVPDSRFPFLGVHFTPRMDGNIWLGPNAILAFKREGYRPFDFSARDIMDIIIKSGLIKL 360

Query: 358 GLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDF 416
             +   YG  EM  + F S  V  L+++I EI   D+ RGP+GVRAQAL   G+L++DF
Sbjct: 361 VFQNFSYGVNEMYKACFLSATVKHLQKFIPEITISDVLRGPAGVRAQALDRDGNLIEDF 419

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 2

>sp|Q9H9P8|L2HDH_HUMAN L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Homo sapiens GN=L2HGDH PE=1 SV=3

 Score =  369 bits (948), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 195/379 (51%), Positives = 258/379 (68%), Gaps = 12/379 (3%)

Query: 50  SSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAG 109
           S S S + +D+V+VGGGIVG+A+AR L L +P + I ++EKEK+L +HQTGHNSGV+H+G
Sbjct: 41  SRSASTSSFDIVIVGGGIVGLASARALILRHPSLSIGVLEKEKDLAVHQTGHNSGVIHSG 100

Query: 110 IYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVAL-NEQLEPLHDLYERSIQNN 168
           IYYKP +LKAKLCV+G  L YEY  ++ I YK+CGKLIVA+  E++  L  LYE+ +QN 
Sbjct: 101 IYYKPESLKAKLCVQGAALLYEYCQQKGISYKQCGKLIVAVEQEEIPRLQALYEKGLQNG 160

Query: 169 VKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQV- 227
           V  +RL+  E+IK  EPYC+G+ AI  P+TGIVD+  V     ++F E GG +  N +V 
Sbjct: 161 VPGLRLIQQEDIKKKEPYCRGLMAIDCPHTGIVDYRQVALSFAQDFQEAGGSVLTNFEVK 220

Query: 228 --ESFKENPES--------VTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVP 277
             E  KE+P          + I   +G+ +   Y + CAGL +D ++  SGC+ +P IVP
Sbjct: 221 GIEMAKESPSRSIDGMQYPIVIKNTKGEEIRCQYVVTCAGLYSDRISELSGCTPDPRIVP 280

Query: 278 FRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRW 337
           FRG+YLLL P K +LV+GNIYPVPD  FPFLGVHFTPRMDGS+WLGPNAVLAFK+EGYR 
Sbjct: 281 FRGDYLLLKPEKCYLVKGNIYPVPDSRFPFLGVHFTPRMDGSIWLGPNAVLAFKREGYRP 340

Query: 338 RDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRG 397
            DFS  ++   +   G  +L  +   YG  EM  + F    V  L+++I EI   DI RG
Sbjct: 341 FDFSATDVMDIIINSGLIKLASQNFSYGVTEMYKACFLGATVKYLQKFIPEITISDILRG 400

Query: 398 PSGVRAQALSSSGDLVDDF 416
           P+GVRAQAL   G+LV+DF
Sbjct: 401 PAGVRAQALDRDGNLVEDF 419

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 2

>sp|Q91YP0|L2HDH_MOUSE L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Mus musculus GN=L2hgdh PE=2 SV=1

 Score =  367 bits (943), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/359 (50%), Positives = 243/359 (67%), Gaps = 12/359 (3%)

Query: 70  VATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLA 129
           +A+AR L L +P + I +VEKEK+L +HQTGHNSGV+H+GIYYKP +LKAKLCVEG  L 
Sbjct: 62  LASARTLILKHPGLSIGVVEKEKDLALHQTGHNSGVIHSGIYYKPESLKAKLCVEGAALI 121

Query: 130 YEYFDKRNIPYKKCGKLIVAL-NEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCK 188
           YEY + + IPY++CGKLIVA+  E++  L  LYER +QN V+ +RL+  E+IK  EPYC+
Sbjct: 122 YEYCNLKGIPYRQCGKLIVAVEQEEIPRLQALYERGLQNGVEGLRLIQQEDIKKKEPYCR 181

Query: 189 GVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESF---KENPES--------V 237
           G+ AI  P TGIV++  V     ++F E GG I  + +V+     KEN           +
Sbjct: 182 GLMAIDCPYTGIVNYQQVALSFAQDFQEAGGSILRDFEVKGIEIAKENSSRSKDGMNYPI 241

Query: 238 TISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNI 297
            +   +G  +   Y + CAGL +D ++  SGC+ +P IVPFRG+YL+L P K +LV+GNI
Sbjct: 242 AVKNSKGKEIRCRYVVTCAGLYSDRISELSGCNPDPQIVPFRGDYLVLKPEKGYLVKGNI 301

Query: 298 YPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRL 357
           YPVPD  FPFLGVHFTPR+DG++WLGPNAVLAFK+EGYR  DF  R++   +   GF  L
Sbjct: 302 YPVPDSRFPFLGVHFTPRLDGTIWLGPNAVLAFKREGYRPFDFDARDVMEVILKSGFINL 361

Query: 358 GLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDF 416
             ++  YG  EM  + F S  V  L+++I EI   D+ RGP+GVRAQAL   G+LV+DF
Sbjct: 362 VFQHFSYGVNEMYKACFLSETVKHLQKFIPEITISDVLRGPAGVRAQALDRDGNLVEDF 420

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 2

>sp|Q55GI5|L2HDH_DICDI L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=l2hgdh PE=3 SV=1

 Score =  340 bits (872), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 169/400 (42%), Positives = 258/400 (64%), Gaps = 17/400 (4%)

Query: 34  KMKTCLVEKEKEFFSMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKE 93
           K  + +++  K F       +  +YDV +VGGGIVG+AT REL    PK+KI ++EKE E
Sbjct: 2   KNSSSMLKGVKSFIGSGIYTNKPIYDVAIVGGGIVGLATGRELLKRNPKLKIVILEKENE 61

Query: 94  LGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALN-E 152
           +  HQ+ HNSGV+H GIYYKPG+L+AKLC +G  L Y+Y ++  I Y+ CGKLIVA   E
Sbjct: 62  IAPHQSSHNSGVIHCGIYYKPGSLRAKLCTKGSKLMYDYCNENQINYENCGKLIVATKKE 121

Query: 153 QLEPLHDLYERSIQNNVKDVRLV-SAEEIKTIEPYCKG-VKAIHSPNTGIVDWGLVTRVM 210
           + + L  LY+R I+N V +++L+ S E++ +IEP+  G ++AIH+P+TGI+D+  V++  
Sbjct: 122 EFQQLEQLYKRGIENGVPNIKLLESKEQLLSIEPFINGGLRAIHTPSTGIIDYKEVSKSF 181

Query: 211 GEEFCELGG-----EIRLNQQVESFKENPESVTISTKQGD---------HLESSYALVCA 256
           G +  E  G     EI+LN   ++FK N     +    GD          + + Y++VC 
Sbjct: 182 GNDITEKFGKDSKSEIKLNFNAKNFKYNSNDKLLLISTGDDDDDEEQQQSILTKYSIVCG 241

Query: 257 GLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRM 316
           G+ +D +A  +  + EP+IVPFRG +L   P  +HL++GN+YP+P+ +FPFLGVHFT R+
Sbjct: 242 GMNSDRIAKVAYGNDEPSIVPFRGSFLQFKPEFRHLIKGNVYPLPNASFPFLGVHFTKRI 301

Query: 317 DGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPS 376
           +G VWLGPNAVL+F +EGY++ DF++ +    ++ PG ++L  K+ +YG  E+   +   
Sbjct: 302 NGEVWLGPNAVLSFDREGYKFTDFNLHDTIDLIKNPGLFKLAKKHWKYGLGELYRDFNKD 361

Query: 377 MRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDF 416
             +  LK Y+  I    ++ G SGVR+QA+S SGDL++DF
Sbjct: 362 HFIQLLKPYMPNITVDMLEYGGSGVRSQAISKSGDLIEDF 401

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 2

>sp|Q5R9N7|L2HDH_PONAB L-2-hydroxyglutarate dehydrogenase, mitochondrial OS=Pongo abelii GN=L2HGDH PE=2 SV=1

 Score =  326 bits (835), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 179/379 (47%), Positives = 237/379 (62%), Gaps = 56/379 (14%)

Query: 50  SSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAG 109
           S S S + +D+V+VGGGIVG+A+AR L L +P + I ++EKEK+L +HQTGHNSGV+H+G
Sbjct: 41  SRSASTSSFDIVIVGGGIVGLASARALILRHPSLSIGVLEKEKDLAVHQTGHNSGVIHSG 100

Query: 110 IYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVAL-NEQLEPLHDLYERSIQNN 168
           IYYKP +LKAKLCV+G  L YEY  ++ I YK+CGKLIVA+  E++  L  LYER +QN 
Sbjct: 101 IYYKPESLKAKLCVQGAALLYEYCQQKGISYKQCGKLIVAVEQEEIPRLQALYERGLQNG 160

Query: 169 VKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVE 228
           V+ +RL+  ++IK  EPYC+G+ AI  P+TGIVD+  V     ++F + GG +  N +V+
Sbjct: 161 VQGLRLIQQDDIKKKEPYCRGLMAIDCPHTGIVDYRQVALSFAQDFQDAGGSVLTNFEVK 220

Query: 229 SFKENPES-----------VTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVP 277
             +   ES           + I   +G+ +   Y + CAGL +D ++  SGCS +P IV 
Sbjct: 221 DIEMAKESLSRSIDGMQYPIVIKNIKGEEIRCQYVVTCAGLYSDRISELSGCSPDPRIVS 280

Query: 278 FRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRW 337
           FRG+YLLL P K +LV+GNIYPVPD  FPFLGVHFT RMDGS+WLGPNAVLAFK+EGYR 
Sbjct: 281 FRGDYLLLKPEKCYLVKGNIYPVPDSRFPFLGVHFTLRMDGSIWLGPNAVLAFKREGYRP 340

Query: 338 RDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRG 397
            DFS  ++   +                                            I RG
Sbjct: 341 FDFSATDVMDII--------------------------------------------INRG 356

Query: 398 PSGVRAQALSSSGDLVDDF 416
           P+GVRAQAL   G+LVDDF
Sbjct: 357 PAGVRAQALDRDGNLVDDF 375

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 2

>sp|P37339|LHGO_ECOLI L-2-hydroxyglutarate oxidase LhgO OS=Escherichia coli (strain K12) GN=lhgO PE=1 SV=3

 Score =  282 bits (721), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 158/363 (43%), Positives = 219/363 (60%), Gaps = 6/363 (1%)

Query: 57  LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGT 116
           +YD V++GGGI+G++TA +L   YP  +I L+EKE     HQTGHNSGV+HAG+YY PG+
Sbjct: 1   MYDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESAPACHQTGHNSGVIHAGVYYTPGS 60

Query: 117 LKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLV 175
           LKA+ C+ G      + D+  I Y  CGK++VA ++ ++E +  L+ER+  N ++    +
Sbjct: 61  LKAQFCLAGNRATKAFCDQNGIRYDNCGKMLVATSDLEMERMRALWERTAANGIER-EWL 119

Query: 176 SAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPE 235
           +A+E++  EP   G+  I  P++GIV +  VT  M + F   GGEI  N +V    E+  
Sbjct: 120 NADELREREPNITGLGGIFVPSSGIVSYRDVTAAMAKIFQSRGGEIIYNAEVSGLNEHKN 179

Query: 236 SVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPA--IVPFRGEYLLLNPAKQHLV 293
            V I T+QG   E+S  + C+GL AD +    G  LEP   I PFRGEY  L P    +V
Sbjct: 180 GVVIRTRQGGEYEASTLISCSGLMADRLVKMLG--LEPGFIICPFRGEYFRLAPEHNQIV 237

Query: 294 RGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPG 353
              IYP+PDP  PFLGVH T  +DGSV +GPNAVLAFK+EGYR RDFS  +    L   G
Sbjct: 238 NHLIYPIPDPAMPFLGVHLTRMIDGSVTVGPNAVLAFKREGYRKRDFSFSDTLEILGSSG 297

Query: 354 FWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLV 413
             R+   + R G  EM  S   S  +  +++Y   +   D+Q  P+GVRAQA+S  G L+
Sbjct: 298 IRRVLQNHLRSGLGEMKNSLCKSGYLRLVQKYCPRLSLSDLQPWPAGVRAQAVSPDGKLI 357

Query: 414 DDF 416
           DDF
Sbjct: 358 DDF 360

Oxidizes L-2-hydroxyglutarate, probably to recover alpha-ketoglutarate mistakenly reduced by other enzymes or formed during growth on propionate.

Escherichia coli (strain K12) (taxid: 83333)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|P75063|Y051_MYCPN Uncharacterized protein MG039 homolog OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129) GN=MPN_051 PE=4 SV=1

 Score = 99.0 bits (245), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 86/289 (29%), Positives = 139/289 (48%), Gaps = 16/289 (5%)

Query: 59  DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLK 118
           DV++VGGG++G ATA EL  +  K+K+ LVEK   L    +  NSGV+H GI   P  L 
Sbjct: 5   DVLIVGGGVIGCATAYEL--SQYKLKVTLVEKHHYLAQETSHANSGVIHTGIDPNPHKLT 62

Query: 119 AKLCVEGMNLAYE-YFDKRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQN--NVKDVRL 174
           AK  + G  L    YF +   P +K   LIVA NE + E L  L +R I N  N++D+++
Sbjct: 63  AKYNILGKKLWLNTYFKRLGFPRQKIRTLIVAFNEMEREQLEVLKQRGIANQINLEDIQM 122

Query: 175 VSAEEIKTIEPYCKG--VKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKE 232
           +S EE   +EPY     V  +    +  +D  L ++ +     +   +I  N +V +  +
Sbjct: 123 LSKEETLKLEPYVNPEIVAGLKIEGSWAIDPVLASKCLALAAQQNKVQICTNTEVTNISK 182

Query: 233 NPES---VTISTKQGDHLESSYALVCAGLQADEMA-LKSGCSLEPAIVPFRGEYLLLNPA 288
             +    V  + +     +    +  AG  AD +A L      E      RG+Y+++   
Sbjct: 183 QVDGTYLVWTNNETTPSFKVKKIIDAAGHYADYLAHLAKADDFEQTT--RRGQYVVVTNQ 240

Query: 289 KQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRW 337
            +  +   ++ VP  +    GV  +P +DG+  +GP A+    KE  R+
Sbjct: 241 GELHLNSMVFMVPTIHGK--GVIVSPMLDGNFLVGPTALDGVDKEATRY 287

Mycoplasma pneumoniae (strain ATCC 29342 / M129) (taxid: 272634)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	473
321466639	462	hypothetical protein DAPPUDRAFT_305386 [	0.758	0.777	0.601	1e-125
195114986	455	GI17168 [Drosophila mojavensis] gi|19391	0.780	0.810	0.603	1e-123
195437853	457	GK24330 [Drosophila willistoni] gi|19416	0.775	0.803	0.602	1e-123
195387960	468	GJ17673 [Drosophila virilis] gi|19414911	0.758	0.767	0.605	1e-122
195035497	452	GH11599 [Drosophila grimshawi] gi|193905	0.758	0.794	0.602	1e-122
24585081	455	CG10639 [Drosophila melanogaster] gi|729	0.780	0.810	0.592	1e-121
195484296	455	GE12689 [Drosophila yakuba] gi|194176735	0.758	0.789	0.597	1e-121
312381137	590	hypothetical protein AND_06627 [Anophele	0.758	0.608	0.590	1e-121
119112468	439	AGAP007868-PA [Anopheles gambiae str. PE	0.758	0.817	0.587	1e-121
194759574	453	GF14644 [Drosophila ananassae] gi|190615	0.758	0.792	0.602	1e-121

>gi|321466639|gb|EFX77633.1| hypothetical protein DAPPUDRAFT_305386 [Daphnia pulex]

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/371 (60%), Positives = 283/371 (76%), Gaps = 12/371 (3%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
           YD+V+VGGGIVG+ATARE+ + +P MK  +VEKE  L  HQ+GHNSGVVH GIYYKPG+L
Sbjct: 47  YDIVIVGGGIVGMATAREMIMRHPNMKFAVVEKENCLAAHQSGHNSGVVHGGIYYKPGSL 106

Query: 118 KAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEP-LHDLYERSIQNNVKDVRLVS 176
           KAKLCVEG++L+Y+YFD++ IPYKKCGKLIVA+ +Q  P L DLY R IQN V D++++ 
Sbjct: 107 KAKLCVEGLHLSYKYFDEKGIPYKKCGKLIVAVEKQELPRLEDLYNRGIQNGVPDIQMID 166

Query: 177 AEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFK----- 231
             +IK IEPYC+G+KA+ SP+TGIVDWGLVT+  GE+F  LGG+I LN +V+ FK     
Sbjct: 167 GAKIKEIEPYCQGLKAVWSPHTGIVDWGLVTQYYGEDFKALGGDIHLNFEVKDFKVAEES 226

Query: 232 ------ENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLL 285
                  N + V ++   G  +   Y L C GLQ+D +A  SGCS EP IVPFRGEYLLL
Sbjct: 227 KVKALASNKKGVQVTASNGQSVRCKYVLTCGGLQSDRLAELSGCSREPRIVPFRGEYLLL 286

Query: 286 NPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVREL 345
           NP K HLV+GNIYPVPDP FPFLGVHFTPRMDGSVWLGPNAVLA K+EGY W D ++R+L
Sbjct: 287 NPKKTHLVKGNIYPVPDPRFPFLGVHFTPRMDGSVWLGPNAVLALKREGYSWGDINLRDL 346

Query: 346 FSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQA 405
           F +LRY GF +L +K+  +G +E++ S F S+ + EL++YI E+++ DI RGP+GVRAQA
Sbjct: 347 FDSLRYRGFQKLAVKHVAFGLQEIVRSAFISLSLKELQKYIPEVQSSDITRGPAGVRAQA 406

Query: 406 LSSSGDLVDDF 416
           L + G LV+DF
Sbjct: 407 LDADGSLVEDF 417

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195114986|ref|XP_002002048.1| GI17168 [Drosophila mojavensis] gi|193912623|gb|EDW11490.1| GI17168 [Drosophila mojavensis]

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/376 (60%), Positives = 285/376 (75%), Gaps = 7/376 (1%)

Query: 48  SMSSSQS-PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVV 106
           SMSS+      YD+VVVGGGIVG A+ARE+ L +PK+K+ ++EKE +L MHQ+GHNSGV+
Sbjct: 30  SMSSATGGKGEYDLVVVGGGIVGAASAREILLRHPKLKLAILEKEPKLAMHQSGHNSGVI 89

Query: 107 HAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNE-QLEPLHDLYERSI 165
           HAGIYYKPGTLKA+LCVEG+NLAY+Y D+  IPYKKCGKLIVA +E +++ L DL++R I
Sbjct: 90  HAGIYYKPGTLKARLCVEGLNLAYKYLDEHQIPYKKCGKLIVATDEKEVKLLEDLHDRGI 149

Query: 166 QNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQ 225
           +N V+D+R++   +IK IEPYC+G+KA+HSP+TGIVDWGLVT+  GE+F   GG+I LN 
Sbjct: 150 KNQVRDLRMIDGAQIKEIEPYCQGLKALHSPHTGIVDWGLVTQHYGEDFKRAGGDIYLNF 209

Query: 226 QVESFKENPES----VTI-STKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRG 280
            V  F E  E     VTI S K G  + +   L C GLQ+D +A  +GC   P IVPFRG
Sbjct: 210 NVTKFTETKEGSDYPVTIHSGKDGRQVRTKNVLTCGGLQSDLLAELTGCPRAPRIVPFRG 269

Query: 281 EYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDF 340
           EYLLL+  KQH+VRGNIYPVPDP FPFLGVHFTPRMDG +WLGPNAVLA K+EGY W D 
Sbjct: 270 EYLLLSKEKQHMVRGNIYPVPDPRFPFLGVHFTPRMDGKIWLGPNAVLAMKREGYTWGDI 329

Query: 341 SVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSG 400
           ++ ELF  LRYPGF ++  KY  +G  EM  S F +++V  L++YI +I   DI+RGP+G
Sbjct: 330 NLLELFDALRYPGFLKMASKYIGFGFSEMAKSAFINLQVKALQKYIPDITEYDIERGPAG 389

Query: 401 VRAQALSSSGDLVDDF 416
           VRAQAL  SG+LVDDF
Sbjct: 390 VRAQALDLSGNLVDDF 405

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195437853|ref|XP_002066854.1| GK24330 [Drosophila willistoni] gi|194162939|gb|EDW77840.1| GK24330 [Drosophila willistoni]

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/375 (60%), Positives = 281/375 (74%), Gaps = 8/375 (2%)

Query: 50  SSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAG 109
           SSS S   YD+VVVGGGIVG A+ARE+ L +P +K+ +VEKEK+L +HQ+GHNSGV+HAG
Sbjct: 35  SSSSSIGDYDLVVVGGGIVGAASAREILLRHPTLKVAVVEKEKKLAVHQSGHNSGVIHAG 94

Query: 110 IYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNN 168
           IYYKPGTLKA+LCVEG++LAY+Y D+R IPYKKCGKLIVA +E +++ L DL++R I N 
Sbjct: 95  IYYKPGTLKARLCVEGLHLAYKYLDERKIPYKKCGKLIVATDEKEVKLLEDLHQRGIANK 154

Query: 169 VKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVE 228
           V D+R++  ++IK IEPYCKGVKA+HSP+TGIVDW LVT   G +F   GG I L+  V+
Sbjct: 155 VPDLRMIDGDQIKEIEPYCKGVKALHSPHTGIVDWALVTEHYGNDFKLAGGHIYLDYNVK 214

Query: 229 SFKENPES------VTI-STKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGE 281
            F E  E       VTI  +K G  L +   L C GLQ+D +A K+GC   P IVPFRGE
Sbjct: 215 KFSETKEGNSAEYPVTIHGSKPGQTLRTRNVLTCGGLQSDLLAEKTGCPRSPRIVPFRGE 274

Query: 282 YLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFS 341
           YLLL+  KQH+V+GNIYPVPDP FPFLGVHFTPRMDGS+WLGPNAVLA K+EGY W D +
Sbjct: 275 YLLLSKEKQHMVKGNIYPVPDPRFPFLGVHFTPRMDGSIWLGPNAVLALKREGYTWGDIN 334

Query: 342 VRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGV 401
           + ELF  LRYPGF ++  KY  +G  EM  S F +++   L++YI +I   DIQRGP+GV
Sbjct: 335 LLELFDALRYPGFLKMASKYIGFGLSEMSKSAFINLQTKALQKYIPDINEYDIQRGPAGV 394

Query: 402 RAQALSSSGDLVDDF 416
           RAQAL   G+LVDDF
Sbjct: 395 RAQALDLQGNLVDDF 409

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195387960|ref|XP_002052660.1| GJ17673 [Drosophila virilis] gi|194149117|gb|EDW64815.1| GJ17673 [Drosophila virilis]

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 221/365 (60%), Positives = 280/365 (76%), Gaps = 6/365 (1%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
           YD+VVVGGGIVG A+ARE+ L +P +K+ ++EKE  L MHQ+GHNSGV+HAGIYYKPGTL
Sbjct: 54  YDLVVVGGGIVGAASAREILLRHPALKVAILEKEPRLAMHQSGHNSGVIHAGIYYKPGTL 113

Query: 118 KAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALN-EQLEPLHDLYERSIQNNVKDVRLVS 176
           KA+LCVEG++LAY+Y D+  IPYKKCGKLIVA + ++++ L DL++R I+NNV D+R++ 
Sbjct: 114 KARLCVEGLHLAYKYLDEHQIPYKKCGKLIVATDAKEVKLLEDLHQRGIKNNVPDLRMID 173

Query: 177 AEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPES 236
            ++IK IEPYC+GVKA+HSP+TGIVDWGLVT+  GE+F   GG+I L+ +V  F E PE 
Sbjct: 174 GDQIKEIEPYCQGVKALHSPHTGIVDWGLVTQHYGEDFKCAGGDIYLDFKVSKFSETPEG 233

Query: 237 ----VTI-STKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQH 291
               VTI   K G  + +   L C GLQ+D +A  +GC   P IVPFRGEYLLL+  KQH
Sbjct: 234 TDYPVTIHGAKPGQTVSTKNVLTCGGLQSDLLAELTGCPRSPRIVPFRGEYLLLSKQKQH 293

Query: 292 LVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRY 351
           +VRGNIYPVPDP FPFLGVHFTPRMDGS+WLGPNAVLA K+EGY W D ++ ELF  LRY
Sbjct: 294 MVRGNIYPVPDPRFPFLGVHFTPRMDGSIWLGPNAVLALKREGYTWGDINLFELFDALRY 353

Query: 352 PGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGD 411
           PGF ++  KY  +G  EM  S F +++V  L++YI +I   DI+RGP+GVRAQAL   G+
Sbjct: 354 PGFLKMASKYIGFGFSEMAKSAFINLQVKALQKYIPDINEYDIERGPAGVRAQALDLQGN 413

Query: 412 LVDDF 416
           LVDDF
Sbjct: 414 LVDDF 418

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195035497|ref|XP_001989214.1| GH11599 [Drosophila grimshawi] gi|193905214|gb|EDW04081.1| GH11599 [Drosophila grimshawi]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 221/367 (60%), Positives = 282/367 (76%), Gaps = 8/367 (2%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
           YD+VVVGGGIVG A+ARE+ L +P +KI ++EKE +L MHQ+GHNSGV+HAGIYYKPGTL
Sbjct: 36  YDLVVVGGGIVGAASAREILLRHPTLKIAVLEKEPKLAMHQSGHNSGVIHAGIYYKPGTL 95

Query: 118 KAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVS 176
           KA+LCVEG++LAY+Y D+  IPYKK GKLIVA +E +++ L DL+ER ++NNV D+RL+ 
Sbjct: 96  KARLCVEGLHLAYKYLDEHQIPYKKVGKLIVATDEKEVKLLGDLHERGMKNNVPDLRLIE 155

Query: 177 AEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPES 236
            ++IK +EP+C+GVKA+HSP+TGIVDWGLVT+  GE+F   GG+I L+ QV+ F E+   
Sbjct: 156 GDQIKEVEPFCRGVKALHSPHTGIVDWGLVTQHYGEDFKRAGGDIYLDFQVKKFTESASD 215

Query: 237 ------VTI-STKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAK 289
                 VTI   K G  + +   L C GLQ+D +A  +GC  +P IVPFRGEYLLL+  K
Sbjct: 216 GSADYPVTIHGGKSGQKVRTRNVLTCGGLQSDTLAELTGCPRDPRIVPFRGEYLLLSKEK 275

Query: 290 QHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTL 349
           QH+V+GNIYPVPDP FPFLGVHFTPRMDGS+WLGPNAVLA K+EGY W D ++ ELF  L
Sbjct: 276 QHMVKGNIYPVPDPRFPFLGVHFTPRMDGSIWLGPNAVLALKREGYTWGDINLFELFDAL 335

Query: 350 RYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSS 409
           RYPGF ++  KY  +G  EM  S F +++V  L++YI +I   DIQRGP+GVRAQAL  S
Sbjct: 336 RYPGFLKMASKYIGFGFSEMAKSAFINLQVKALQKYIPDINEYDIQRGPAGVRAQALDLS 395

Query: 410 GDLVDDF 416
           G+LVDDF
Sbjct: 396 GNLVDDF 402

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24585081|ref|NP_609923.2| CG10639 [Drosophila melanogaster] gi|7298510|gb|AAF53729.1| CG10639 [Drosophila melanogaster] gi|201065691|gb|ACH92255.1| FI05204p [Drosophila melanogaster]

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 222/375 (59%), Positives = 279/375 (74%), Gaps = 6/375 (1%)

Query: 48  SMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVH 107
           S  SS S   YD+VVVGGGIVG A+ARE+ L +P +K+ ++EKE +L  HQ+GHNSGV+H
Sbjct: 33  SQHSSSSCGDYDLVVVGGGIVGAASAREIVLRHPSLKVAVLEKECKLAKHQSGHNSGVIH 92

Query: 108 AGIYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQ 166
           AGIYYKPGTLKA+LCVEGM+LAY Y D++ IPYKK GKLIVA +E +++ L DL +R I 
Sbjct: 93  AGIYYKPGTLKARLCVEGMHLAYAYLDEKKIPYKKTGKLIVATDEKEVKLLKDLEKRGIA 152

Query: 167 NNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQ 226
           NNV D+R++   EI+ IEPYC+GV A+HSP+TGIVDWGLVT   G++F + GG+I L+  
Sbjct: 153 NNVPDLRMIEGSEIQEIEPYCQGVMALHSPHTGIVDWGLVTEHYGQDFKQCGGDIYLDFN 212

Query: 227 VESFKENPES----VTI-STKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGE 281
           V  F E  E     VTI   K G  + +   L C GLQ+D +A K+GC  +P IVPFRGE
Sbjct: 213 VSKFTETKEGTDYPVTIHGAKPGQTVRTKNVLTCGGLQSDLLAEKTGCPRDPRIVPFRGE 272

Query: 282 YLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFS 341
           YLLL   KQH+V+GNIYPVPDP FPFLGVHFTPRMDGS+WLGPNAVLA K+EGY W D +
Sbjct: 273 YLLLTKEKQHMVKGNIYPVPDPRFPFLGVHFTPRMDGSIWLGPNAVLALKREGYTWGDIN 332

Query: 342 VRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGV 401
           + ELF  LRYPGF ++  KY  +G  EM  SWF ++++  L++YI +I   DIQRGP+GV
Sbjct: 333 LFELFDALRYPGFVKMASKYIGFGLSEMSKSWFINLQIKALQKYIPDITEYDIQRGPAGV 392

Query: 402 RAQALSSSGDLVDDF 416
           RAQA+   G+LVDDF
Sbjct: 393 RAQAMDLDGNLVDDF 407

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195484296|ref|XP_002090634.1| GE12689 [Drosophila yakuba] gi|194176735|gb|EDW90346.1| GE12689 [Drosophila yakuba]

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 218/365 (59%), Positives = 276/365 (75%), Gaps = 6/365 (1%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
           YD+VVVGGGIVG A+ARE+ L +P +K+ ++EKE +L  HQ+GHNSGV+HAGIYYKPGTL
Sbjct: 43  YDLVVVGGGIVGAASAREILLRHPSLKVAVLEKESKLAKHQSGHNSGVIHAGIYYKPGTL 102

Query: 118 KAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVS 176
           KA+LCVEGM+LAY Y D+  IPYKK GKLIVA +E +++ L DL +R I NNV D+R++ 
Sbjct: 103 KARLCVEGMHLAYAYLDEHKIPYKKTGKLIVATDEKEVKLLQDLEKRGIANNVPDLRMIE 162

Query: 177 AEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPES 236
             EI+ IEPYC+G+KA+HSP+TGIVDWGLVT+  G++F + GG+I L+  V  F E  E 
Sbjct: 163 GSEIQEIEPYCQGLKALHSPHTGIVDWGLVTQHYGQDFKQCGGDIYLDFNVSKFSETKEG 222

Query: 237 ----VTI-STKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQH 291
               VTI   K G  + +   L C GLQ+D +A K+GC  +P IVPFRGEYLLL   KQH
Sbjct: 223 TDYPVTIHGAKSGQTVRTKNVLTCGGLQSDLLAEKTGCPRDPRIVPFRGEYLLLTKEKQH 282

Query: 292 LVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRY 351
           +V+GNIYPVPDP FPFLGVHFTPRMDGS+WLGPNAVLA K+EGY W D ++ ELF  LRY
Sbjct: 283 MVKGNIYPVPDPRFPFLGVHFTPRMDGSIWLGPNAVLALKREGYTWGDINLVELFDALRY 342

Query: 352 PGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGD 411
           PGF ++  KY  +G  EM  SWF ++++  L++YI +I   DIQRGP+GVRAQA+   G+
Sbjct: 343 PGFVKMASKYIGFGLSEMSKSWFINLQIKALQKYIPDITEYDIQRGPAGVRAQAMDLDGN 402

Query: 412 LVDDF 416
           LVDDF
Sbjct: 403 LVDDF 407

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312381137|gb|EFR26953.1| hypothetical protein AND_06627 [Anopheles darlingi]

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 215/364 (59%), Positives = 281/364 (77%), Gaps = 5/364 (1%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
           YD+VVVGGGIVG A+ARE+ L +P ++I +VEKE +L  HQ+GHNSGVVHAGIYYKPG+L
Sbjct: 178 YDIVVVGGGIVGTASAREILLRHPTLRIAIVEKEHKLAFHQSGHNSGVVHAGIYYKPGSL 237

Query: 118 KAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALN-EQLEPLHDLYERSIQNNVKDVRLVS 176
           KAKLCVEG++L+Y+YFD++ +PYKK GKLIVA N  ++E L+DLY+RS+ NNV  V +V 
Sbjct: 238 KAKLCVEGLHLSYKYFDEKQVPYKKVGKLIVATNPTEVERLNDLYQRSLANNVPGVEMVD 297

Query: 177 AEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPES 236
           A +IK IEPYCKGVKAI SPNTGIVDWGLVT+    +F   GG++ +N +V  F E P++
Sbjct: 298 AAKIKEIEPYCKGVKAIWSPNTGIVDWGLVTQYYSRDFKAAGGDVYVNFKVNKFSEAPDN 357

Query: 237 ----VTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHL 292
               + + +++GD + +   L C GLQ+D++A  +GC+  P IVPFRGEYLLLNP K H+
Sbjct: 358 LDYPIVVRSEKGDEIRARNILTCGGLQSDKLAEMTGCASVPKIVPFRGEYLLLNPDKCHM 417

Query: 293 VRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYP 352
           VRGNIYPVPDP FPFLGVHFTPRMDGSVWLGPNAVLAF++EGY+W D +V EL   LR+P
Sbjct: 418 VRGNIYPVPDPRFPFLGVHFTPRMDGSVWLGPNAVLAFRREGYKWSDINVPELIDALRFP 477

Query: 353 GFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDL 412
           G  ++  K+   G  E+  S    ++V EL+++I +I   D++RGP+GVRAQAL ++G+L
Sbjct: 478 GLIKMASKFIGAGIMEIARSAIIPLQVRELQKFIPDIHEYDVRRGPAGVRAQALDNAGNL 537

Query: 413 VDDF 416
           VDDF
Sbjct: 538 VDDF 541

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|119112468|ref|XP_317624.2| AGAP007868-PA [Anopheles gambiae str. PEST] gi|116123367|gb|EAA12921.2| AGAP007868-PA [Anopheles gambiae str. PEST]

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 214/364 (58%), Positives = 283/364 (77%), Gaps = 5/364 (1%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
           YD+VVVGGGIVG A+ARE+ L +P ++I +VEKE +L  HQ+GHNSGV+HAGIYYKPG+L
Sbjct: 28  YDIVVVGGGIVGTASAREILLRHPALRIAIVEKEPKLAFHQSGHNSGVIHAGIYYKPGSL 87

Query: 118 KAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVS 176
           KAKLCVEG++L+Y+Y D+++IPYKK GKLIVA N  ++E L+DLY+RS+ NNV DV++V 
Sbjct: 88  KAKLCVEGLHLSYKYLDEKSIPYKKVGKLIVATNPVEVERLNDLYQRSLANNVPDVQVVD 147

Query: 177 AEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPES 236
             +IK IEPYC+G+KAI SP+TGIVDWGLVT+  G +F   GG++ +N +V  F E P++
Sbjct: 148 QAKIKEIEPYCQGLKAIWSPHTGIVDWGLVTQYYGRDFKAAGGDVYINFKVAKFSEAPDN 207

Query: 237 ----VTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHL 292
               + + +++GD + + + L C GLQ+D++A  +GCS  P IVPFRGEYLLLNP K H+
Sbjct: 208 LDYPIVVRSEKGDEIRARHILTCGGLQSDKIAEMTGCSAVPKIVPFRGEYLLLNPDKCHM 267

Query: 293 VRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYP 352
           VRGNIYPVPDP FPFLGVHFTPRMDGSVWLGPNAVLAF++EGY+W D +V EL   LR+P
Sbjct: 268 VRGNIYPVPDPRFPFLGVHFTPRMDGSVWLGPNAVLAFRREGYKWSDINVPELIDALRFP 327

Query: 353 GFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDL 412
           GF ++  K+   G  E+  S    ++V EL+++I +I   D+ RGP+GVRAQAL + G+L
Sbjct: 328 GFIKMASKFVGAGMMEIARSALIPLQVRELQKFIPDIHEYDVARGPAGVRAQALDNDGNL 387

Query: 413 VDDF 416
           VDDF
Sbjct: 388 VDDF 391

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194759574|ref|XP_001962022.1| GF14644 [Drosophila ananassae] gi|190615719|gb|EDV31243.1| GF14644 [Drosophila ananassae]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/365 (60%), Positives = 274/365 (75%), Gaps = 6/365 (1%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
           YD+VVVGGGIVG A+ARE+ L +P +K+ ++EKE +L  HQ+GHNSGV+HAGIYYKPGTL
Sbjct: 40  YDLVVVGGGIVGTASAREILLRHPTLKVAVLEKEPKLATHQSGHNSGVIHAGIYYKPGTL 99

Query: 118 KAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVS 176
           KAKLCVEGM+LAY Y D+R IPYKKCGKLIVA +E +++ L DL +R I NNV D+R++ 
Sbjct: 100 KAKLCVEGMHLAYAYLDERKIPYKKCGKLIVATDEKEVKLLGDLEKRGIANNVPDLRMIE 159

Query: 177 AEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPES 236
             EI+ IEP C+G+KA+HSP+TGIVDWGLVT+  GE+    GG I L+  V  F E  E 
Sbjct: 160 GSEIQEIEPNCQGLKALHSPHTGIVDWGLVTQYYGEDIKRSGGHIYLDYNVSKFSETKEG 219

Query: 237 ----VTI-STKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQH 291
               VTI   K G  + +   L C GLQ+D +A K+GC  +P IVPFRGEYLLL+  KQH
Sbjct: 220 TEYPVTIHGAKPGQTVRTKNVLTCGGLQSDLLAEKTGCPRDPRIVPFRGEYLLLSKEKQH 279

Query: 292 LVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRY 351
           +V+GNIYPVPDP FPFLGVHFTPRMDGS+WLGPNAVLA K+EGY W D ++ EL   LRY
Sbjct: 280 MVKGNIYPVPDPRFPFLGVHFTPRMDGSIWLGPNAVLALKREGYTWGDINILELLDALRY 339

Query: 352 PGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGD 411
           PGF ++  KY  +G  EM  SWF +++V  L++YI +I   DIQRGP+GVRAQA+   G+
Sbjct: 340 PGFVKMASKYVGFGLSEMSKSWFINLQVKALQKYIPDITEYDIQRGPAGVRAQAMDLDGN 399

Query: 412 LVDDF 416
           LVDDF
Sbjct: 400 LVDDF 404

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	473
FB|FBgn0032729	455	CG10639 [Drosophila melanogast	0.758	0.789	0.572	2.6e-117
WB|WBGene00021564	433	Y45G12B.3 [Caenorhabditis eleg	0.758	0.829	0.510	2.4e-106
ZFIN|ZDB-GENE-090319-6	452	l2hgdh "L-2-hydroxyglutarate d	0.731	0.765	0.525	4e-104
UNIPROTKB|F1NBV3	452	L2HGDH "Uncharacterized protei	0.731	0.765	0.522	4.6e-101
UNIPROTKB|F1SHX9	463	L2HGDH "Uncharacterized protei	0.731	0.747	0.513	1.8e-97
RGD|1306250	463	L2hgdh "L-2-hydroxyglutarate d	0.731	0.747	0.502	3.7e-97
MGI|MGI:2384968	464	L2hgdh "L-2-hydroxyglutarate d	0.731	0.745	0.505	7.7e-97
UNIPROTKB|Q9H9P8	463	L2HGDH "L-2-hydroxyglutarate d	0.731	0.747	0.511	1.3e-96
UNIPROTKB|A7MBI3	463	L2HGDH "L-2-hydroxyglutarate d	0.731	0.747	0.502	6.9e-96
UNIPROTKB|E2RRS4	674	L2HGDH "Uncharacterized protei	0.731	0.513	0.511	3e-95

FB|FBgn0032729 CG10639 [Drosophila melanogaster (taxid:7227)]

 Score = 1109 (395.4 bits), Expect = 2.6e-117, Sum P(2) = 2.6e-117
 Identities = 209/365 (57%), Positives = 265/365 (72%)

Query:    58 YDXXXXXXXXXXXATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
             YD           A+ARE+ L +P +K+ ++EKE +L  HQ+GHNSGV+HAGIYYKPGTL
Sbjct:    43 YDLVVVGGGIVGAASAREIVLRHPSLKVAVLEKECKLAKHQSGHNSGVIHAGIYYKPGTL 102

Query:   118 KAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVS 176
             KA+LCVEGM+LAY Y D++ IPYKK GKLIVA +E +++ L DL +R I NNV D+R++ 
Sbjct:   103 KARLCVEGMHLAYAYLDEKKIPYKKTGKLIVATDEKEVKLLKDLEKRGIANNVPDLRMIE 162

Query:   177 AEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPES 236
               EI+ IEPYC+GV A+HSP+TGIVDWGLVT   G++F + GG+I L+  V  F E  E 
Sbjct:   163 GSEIQEIEPYCQGVMALHSPHTGIVDWGLVTEHYGQDFKQCGGDIYLDFNVSKFTETKEG 222

Query:   237 ----VTI-STKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQH 291
                 VTI   K G  + +   L C GLQ+D +A K+GC  +P IVPFRGEYLLL   KQH
Sbjct:   223 TDYPVTIHGAKPGQTVRTKNVLTCGGLQSDLLAEKTGCPRDPRIVPFRGEYLLLTKEKQH 282

Query:   292 LVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRY 351
             +V+GNIYPVPDP FPFLGVHFTPRMDGS+WLGPNAVLA K+EGY W D ++ ELF  LRY
Sbjct:   283 MVKGNIYPVPDPRFPFLGVHFTPRMDGSIWLGPNAVLALKREGYTWGDINLFELFDALRY 342

Query:   352 PGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGD 411
             PGF ++  KY  +G  EM  SWF ++++  L++YI +I   DIQRGP+GVRAQA+   G+
Sbjct:   343 PGFVKMASKYIGFGLSEMSKSWFINLQIKALQKYIPDITEYDIQRGPAGVRAQAMDLDGN 402

Query:   412 LVDDF 416
             LVDDF
Sbjct:   403 LVDDF 407

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

WB|WBGene00021564 Y45G12B.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 998 (356.4 bits), Expect = 2.4e-106, Sum P(2) = 2.4e-106
 Identities = 186/364 (51%), Positives = 258/364 (70%)

Query:    58 YDXXXXXXXXXXXATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
             YD           ATAR+L +  P++K+ L+EKEKEL +HQ+GHNSGV+HAGIYY PG+L
Sbjct:    26 YDLVIVGGGIVGCATARQLLIEKPQLKVALIEKEKELAVHQSGHNSGVIHAGIYYTPGSL 85

Query:   118 KAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALN-EQLEPLHDLYERSIQNNVKDVRLVS 176
             KAKLCVEG++L+YE+FDK  +PYKK GKLIVA+  E++  L  L+ R+  N  +D+ ++ 
Sbjct:    86 KAKLCVEGLDLSYEFFDKEKVPYKKTGKLIVAVEPEEVPRLDALFSRAQTNGCRDIEMID 145

Query:   177 AEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPE- 235
             + +I  +EP+C+G+KA+ SP+TGIVDWG VT+  GE+F + GG+I  +  +E   +N + 
Sbjct:   146 SSKITELEPHCRGLKALWSPHTGIVDWGYVTKRFGEDFEKRGGKIYTSYPLEKISDNHDP 205

Query:   236 SVTISTKQGDHL---ESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHL 292
                I    G  L   E+   + CAGLQ+D +A  SGCS +P IVPFRGEYLLL P K+HL
Sbjct:   206 GYPIRVSSGPALAEFETKNLITCAGLQSDRVAALSGCSTDPKIVPFRGEYLLLKPEKRHL 265

Query:   293 VRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYP 352
             V+ NIYPVPDP FPFLGVHFTPRM+G +WLGPNAVLA+K+EGY +   S  +L  +L Y 
Sbjct:   266 VKTNIYPVPDPRFPFLGVHFTPRMNGDIWLGPNAVLAYKREGYSYFSISPSDLLESLSYS 325

Query:   353 GFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDL 412
             G  +L  K+  +G KE+    + + +V +L+++I E++  D+ RGP+GVRAQA+ S+G+L
Sbjct:   326 GMQKLVKKHFTFGIKELYRGVWIAAQVKQLQRFIPELKLSDVTRGPAGVRAQAMDSAGNL 385

Query:   413 VDDF 416
             VDDF
Sbjct:   386 VDDF 389

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

ZFIN|ZDB-GENE-090319-6 l2hgdh "L-2-hydroxyglutarate dehydrogenase" [Danio rerio (taxid:7955)]

 Score = 985 (351.8 bits), Expect = 4.0e-104, Sum P(2) = 4.0e-104
 Identities = 188/358 (52%), Positives = 245/358 (68%)

Query:    71 ATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAY 130
             A+AREL L +P +   L+EKEKEL +HQTGHNSGV+H GIYY PG+LKA+LCV G  LAY
Sbjct:    51 ASARELILRHPNLSFALLEKEKELALHQTGHNSGVIHTGIYYTPGSLKAQLCVRGATLAY 110

Query:   131 EYFDKRNIPYKKCGKLIVALN-EQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG 189
             EY  K+ +PY +CGKLIVA++ E++  L  LYER  +NNV+D+RL+ A+ I+  EPYC+G
Sbjct:   111 EYCQKKGVPYNRCGKLIVAVDREEIPRLKALYERGQKNNVRDLRLIDAKAIREKEPYCRG 170

Query:   190 VKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPES-----------VT 238
             + A+ SP TGIVDW  V    G++F E GG +  + +        ES           + 
Sbjct:   171 IMALDSPYTGIVDWREVALAYGKDFQEAGGTVMTDYEASDMSVAAESQADSTNGQKYPII 230

Query:   239 ISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIY 298
             I + QG  +  ++ L C GL +D ++  SGCS EP IVPFRG+YL+L P K +LVRGNIY
Sbjct:   231 IRSSQGKEVRCAFVLACGGLYSDRLSEMSGCSSEPRIVPFRGDYLVLKPEKNYLVRGNIY 290

Query:   299 PVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLG 358
             PVP+P FPFLGVHFTPRMDGSVWLGPNAVLAFK+EGY+  DF  ++  + L + G  RL 
Sbjct:   291 PVPNPRFPFLGVHFTPRMDGSVWLGPNAVLAFKREGYKLFDFDAQDFVNALSFSGLQRLV 350

Query:   359 LKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDF 416
             +K   YG  E+    FP  +V  L+++I E+   D+ RGPSGVRAQAL + G+LVDDF
Sbjct:   351 MKNVVYGVGEIYRGVFPGAQVKILQKFIPELSPSDVIRGPSGVRAQALDAEGNLVDDF 408

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|F1NBV3 L2HGDH "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 970 (346.5 bits), Expect = 4.6e-101, Sum P(2) = 4.6e-101
 Identities = 187/358 (52%), Positives = 250/358 (69%)

Query:    71 ATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAY 130
             A AR+L L +P +   ++EKE++L  HQ+GHNSGV+H+GIYY PG+LKAKLCV+G  L Y
Sbjct:    51 AAARQLVLRHPALGFAVLEKERQLAHHQSGHNSGVIHSGIYYTPGSLKAKLCVQGAALCY 110

Query:   131 EYFDKRNIPYKKCGKLIVALNEQLEP-LHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG 189
             EY D++ IPYK+CGKLIVA+ +   P L  LYER +QNNV+ ++L+ A+EI+  EP+C+G
Sbjct:   111 EYCDRKGIPYKQCGKLIVAVEQDEIPRLKALYERGLQNNVRGLKLIGAKEIQAKEPFCRG 170

Query:   190 VKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQV---ESFKENPES--------VT 238
             + A+ SP TGIVD+  V +   E+F E GG I  + +V   E  KE+           V 
Sbjct:   171 LMALDSPYTGIVDYRQVAQSYAEDFQEAGGTILTDFEVTDMEMAKESSSGSEDGLQYPVV 230

Query:   239 ISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIY 298
             + + +G+ +   + + CAGL +D ++  SGCS EP IVPFRG+YL+L P K ++V+GNIY
Sbjct:   231 VRSSKGEEIYCRHIVTCAGLYSDRLSEISGCSPEPRIVPFRGDYLVLKPEKCYMVKGNIY 290

Query:   299 PVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLG 358
             PVP+P FPFLG HFTPRMDGSVWLGPNAVLAFK+EGY+  DFS  +    + Y G W+L 
Sbjct:   291 PVPNPRFPFLGFHFTPRMDGSVWLGPNAVLAFKREGYKLFDFSATDFLDAVLYSGLWKLV 350

Query:   359 LKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDF 416
             LK   YG  EM  + F S +V EL+++I E+   D+ RGPSGVRAQAL S G+LVDDF
Sbjct:   351 LKNLSYGLSEMYRACFLSAQVKELQKFIPEVTVNDVLRGPSGVRAQALDSDGNLVDDF 408

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0044267 "cellular protein metabolic process" evidence=IEA

GO:0047545 "2-hydroxyglutarate dehydrogenase activity" evidence=IEA

UNIPROTKB|F1SHX9 L2HGDH "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 936 (334.5 bits), Expect = 1.8e-97, Sum P(2) = 1.8e-97
 Identities = 184/358 (51%), Positives = 244/358 (68%)

Query:    71 ATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAY 130
             A+AR L L +P + I ++EKEK+L +HQTGHNSGV+H+GIYYKP +LKAKLCV+G  L Y
Sbjct:    62 ASARALILRHPALSIGVLEKEKDLAIHQTGHNSGVIHSGIYYKPESLKAKLCVQGAALIY 121

Query:   131 EYFDKRNIPYKKCGKLIVALN-EQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG 189
             EY +++ I YK+CGKLIVA+  E++  L  LYER +QN V+ +RL+  E+IK  EPYC+G
Sbjct:   122 EYCNQKGISYKQCGKLIVAVEQEEIPRLQALYERGLQNGVQGLRLIQQEDIKKKEPYCRG 181

Query:   190 VKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESF---KENPES--------VT 238
             + AI  P TGIVD+  V     ++F E GG +  + +VE     KE+P          + 
Sbjct:   182 LMAIDCPYTGIVDYRQVALSFAQDFQEAGGSVLTSFEVEDIEMAKESPSRHKDGMKYPIV 241

Query:   239 ISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIY 298
             I   +G+ +   Y + CAGL +D ++  SGC+  P IVPFRG+YLLL P K++LV+GNIY
Sbjct:   242 IRNTKGEEVRCQYVVTCAGLYSDRISELSGCNPNPRIVPFRGDYLLLKPEKRYLVKGNIY 301

Query:   299 PVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLG 358
             PVPD  FPFLGVHFTPRMDGS+WLGPNAVLAFK+EGYR  DFS R++   +   G  +L 
Sbjct:   302 PVPDSRFPFLGVHFTPRMDGSIWLGPNAVLAFKREGYRPFDFSARDIMDIILKSGLMKLV 361

Query:   359 LKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDF 416
              +   YG  EM  + F S  V  L+++I EI   DI RGP+GVRAQAL   G+L++DF
Sbjct:   362 FQNFSYGVNEMYKACFLSATVKHLQKFIPEITISDILRGPAGVRAQALDRDGNLIEDF 419

GO:0047545 "2-hydroxyglutarate dehydrogenase activity" evidence=IEA

GO:0044267 "cellular protein metabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

RGD|1306250 L2hgdh "L-2-hydroxyglutarate dehydrogenase" [Rattus norvegicus (taxid:10116)]

 Score = 921 (329.3 bits), Expect = 3.7e-97, Sum P(2) = 3.7e-97
 Identities = 180/358 (50%), Positives = 245/358 (68%)

Query:    71 ATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAY 130
             A+AR L L +P++ I +VEKEK+L +HQTG NSGV+H+GIYYKP +LKAKLCVEG  L Y
Sbjct:    62 ASARTLILKHPELSIGVVEKEKDLALHQTGRNSGVIHSGIYYKPESLKAKLCVEGAALIY 121

Query:   131 EYFDKRNIPYKKCGKLIVALN-EQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG 189
             EY + + IPY++CGKLIVA+  E++  L  LYER +QN V+ +RL+  E+IK  EPYC+G
Sbjct:   122 EYCNLKGIPYRQCGKLIVAVEQEEIPRLQALYERGLQNGVQGLRLIQQEDIKKKEPYCRG 181

Query:   190 VKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESF---KENPES--------VT 238
             + AI  P TGIV++  V     ++F E GG I  + +V+     KE+P          + 
Sbjct:   182 LMAIDCPYTGIVNYQQVALSFAQDFQEAGGSILKDFEVKDIGIAKEDPPRSKDGMKYPIA 241

Query:   239 ISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIY 298
             +   +G  ++  Y + CAGL +D ++  SGC+ +P IVPFRG+YL+L P K +LV+GNIY
Sbjct:   242 VKNSKGKEIQCRYVVTCAGLYSDRISELSGCNPDPQIVPFRGDYLVLKPEKGYLVKGNIY 301

Query:   299 PVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLG 358
             PVPD   PFLGVHFTPR+DGS+WLGPNAVLAFK+EGYR  DF+ R++   +   GF +L 
Sbjct:   302 PVPDSRLPFLGVHFTPRLDGSIWLGPNAVLAFKREGYRPFDFNARDIMEVILKSGFIKLV 361

Query:   359 LKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDF 416
              +   YG+ E+  + F S  V  L+++I EI   D+ RGP+GVRAQAL   G+LVDDF
Sbjct:   362 FQNFSYGASEIYKACFLSETVKHLQKFIPEITTNDVLRGPAGVRAQALDRDGNLVDDF 419

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA;ISO

GO:0044267 "cellular protein metabolic process" evidence=IEA;ISO

GO:0047545 "2-hydroxyglutarate dehydrogenase activity" evidence=IEA;ISO

MGI|MGI:2384968 L2hgdh "L-2-hydroxyglutarate dehydrogenase" [Mus musculus (taxid:10090)]

 Score = 921 (329.3 bits), Expect = 7.7e-97, Sum P(2) = 7.7e-97
 Identities = 181/358 (50%), Positives = 242/358 (67%)

Query:    71 ATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAY 130
             A+AR L L +P + I +VEKEK+L +HQTGHNSGV+H+GIYYKP +LKAKLCVEG  L Y
Sbjct:    63 ASARTLILKHPGLSIGVVEKEKDLALHQTGHNSGVIHSGIYYKPESLKAKLCVEGAALIY 122

Query:   131 EYFDKRNIPYKKCGKLIVALN-EQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG 189
             EY + + IPY++CGKLIVA+  E++  L  LYER +QN V+ +RL+  E+IK  EPYC+G
Sbjct:   123 EYCNLKGIPYRQCGKLIVAVEQEEIPRLQALYERGLQNGVEGLRLIQQEDIKKKEPYCRG 182

Query:   190 VKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESF---KENPES--------VT 238
             + AI  P TGIV++  V     ++F E GG I  + +V+     KEN           + 
Sbjct:   183 LMAIDCPYTGIVNYQQVALSFAQDFQEAGGSILRDFEVKGIEIAKENSSRSKDGMNYPIA 242

Query:   239 ISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIY 298
             +   +G  +   Y + CAGL +D ++  SGC+ +P IVPFRG+YL+L P K +LV+GNIY
Sbjct:   243 VKNSKGKEIRCRYVVTCAGLYSDRISELSGCNPDPQIVPFRGDYLVLKPEKGYLVKGNIY 302

Query:   299 PVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLG 358
             PVPD  FPFLGVHFTPR+DG++WLGPNAVLAFK+EGYR  DF  R++   +   GF  L 
Sbjct:   303 PVPDSRFPFLGVHFTPRLDGTIWLGPNAVLAFKREGYRPFDFDARDVMEVILKSGFINLV 362

Query:   359 LKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDF 416
              ++  YG  EM  + F S  V  L+++I EI   D+ RGP+GVRAQAL   G+LV+DF
Sbjct:   363 FQHFSYGVNEMYKACFLSETVKHLQKFIPEITISDVLRGPAGVRAQALDRDGNLVEDF 420

GO:0005739 "mitochondrion" evidence=ISO;ISA;IDA

GO:0016021 "integral to membrane" evidence=ISO;ISA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0044267 "cellular protein metabolic process" evidence=ISO

GO:0047545 "2-hydroxyglutarate dehydrogenase activity" evidence=ISO;ISA

GO:0055114 "oxidation-reduction process" evidence=ISO;ISA

UNIPROTKB|Q9H9P8 L2HGDH "L-2-hydroxyglutarate dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 921 (329.3 bits), Expect = 1.3e-96, Sum P(2) = 1.3e-96
 Identities = 183/358 (51%), Positives = 241/358 (67%)

Query:    71 ATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAY 130
             A+AR L L +P + I ++EKEK+L +HQTGHNSGV+H+GIYYKP +LKAKLCV+G  L Y
Sbjct:    62 ASARALILRHPSLSIGVLEKEKDLAVHQTGHNSGVIHSGIYYKPESLKAKLCVQGAALLY 121

Query:   131 EYFDKRNIPYKKCGKLIVALN-EQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG 189
             EY  ++ I YK+CGKLIVA+  E++  L  LYE+ +QN V  +RL+  E+IK  EPYC+G
Sbjct:   122 EYCQQKGISYKQCGKLIVAVEQEEIPRLQALYEKGLQNGVPGLRLIQQEDIKKKEPYCRG 181

Query:   190 VKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQV---ESFKENPES--------VT 238
             + AI  P+TGIVD+  V     ++F E GG +  N +V   E  KE+P          + 
Sbjct:   182 LMAIDCPHTGIVDYRQVALSFAQDFQEAGGSVLTNFEVKGIEMAKESPSRSIDGMQYPIV 241

Query:   239 ISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIY 298
             I   +G+ +   Y + CAGL +D ++  SGC+ +P IVPFRG+YLLL P K +LV+GNIY
Sbjct:   242 IKNTKGEEIRCQYVVTCAGLYSDRISELSGCTPDPRIVPFRGDYLLLKPEKCYLVKGNIY 301

Query:   299 PVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLG 358
             PVPD  FPFLGVHFTPRMDGS+WLGPNAVLAFK+EGYR  DFS  ++   +   G  +L 
Sbjct:   302 PVPDSRFPFLGVHFTPRMDGSIWLGPNAVLAFKREGYRPFDFSATDVMDIIINSGLIKLA 361

Query:   359 LKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDF 416
              +   YG  EM  + F    V  L+++I EI   DI RGP+GVRAQAL   G+LV+DF
Sbjct:   362 SQNFSYGVTEMYKACFLGATVKYLQKFIPEITISDILRGPAGVRAQALDRDGNLVEDF 419

GO:0016021 "integral to membrane" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0031305 "integral to mitochondrial inner membrane" evidence=NAS

GO:0044267 "cellular protein metabolic process" evidence=IDA

GO:0047545 "2-hydroxyglutarate dehydrogenase activity" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0006103 "2-oxoglutarate metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|A7MBI3 L2HGDH "L-2-hydroxyglutarate dehydrogenase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 923 (330.0 bits), Expect = 6.9e-96, Sum P(2) = 6.9e-96
 Identities = 180/358 (50%), Positives = 243/358 (67%)

Query:    71 ATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAY 130
             A+AR L L +P + I ++EKEK L +HQTGHNSGV+H+GIYYKP +LKAKLCV+G  L Y
Sbjct:    62 ASARALILRHPALSIGVLEKEKNLAVHQTGHNSGVIHSGIYYKPESLKAKLCVQGAALIY 121

Query:   131 EYFDKRNIPYKKCGKLIVALN-EQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG 189
             EY +++ I YK+CGKLIVA+  E++  L  LYER +QN V+ +RL+  E+IK  EPYC+G
Sbjct:   122 EYCNQKGISYKQCGKLIVAVEQEEIPRLQALYERGLQNGVQGLRLIQQEDIKKKEPYCRG 181

Query:   190 VKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESF---KENPES--------VT 238
             + AI  P TGIVD+  V     ++F E GG +  N +VE     +E+P          + 
Sbjct:   182 LMAIDCPYTGIVDYRQVAFSFAKDFQEAGGSVLTNFEVEDIEMARESPSRSKDGMKYPIV 241

Query:   239 ISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIY 298
             I   +G+ +   Y + CAGL +D ++  SGC+  P IVPFRG+YL+L P K++LV+GNIY
Sbjct:   242 IRNTKGEEVRCQYVVTCAGLYSDRISELSGCNPNPRIVPFRGDYLVLKPEKRYLVKGNIY 301

Query:   299 PVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLG 358
             PVPD  FPFLGVHFTPRMDG++WLGPNA+LAFK+EGYR  DFS R++   +   G  +L 
Sbjct:   302 PVPDSRFPFLGVHFTPRMDGNIWLGPNAILAFKREGYRPFDFSARDIMDIIIKSGLIKLV 361

Query:   359 LKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDF 416
              +   YG  EM  + F S  V  L+++I EI   D+ RGP+GVRAQAL   G+L++DF
Sbjct:   362 FQNFSYGVNEMYKACFLSATVKHLQKFIPEITISDVLRGPAGVRAQALDRDGNLIEDF 419

GO:0005739 "mitochondrion" evidence=IEA

GO:0044267 "cellular protein metabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0047545 "2-hydroxyglutarate dehydrogenase activity" evidence=IEA

UNIPROTKB|E2RRS4 L2HGDH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 919 (328.6 bits), Expect = 3.0e-95, Sum P(2) = 3.0e-95
 Identities = 183/358 (51%), Positives = 242/358 (67%)

Query:    71 ATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAY 130
             A+AR L L +P + I ++EKEK L +HQTGHNSGV+H+GIYYKP +LKAKLCV+G  L Y
Sbjct:   273 ASARALILRHPTLSIGVLEKEKHLAVHQTGHNSGVIHSGIYYKPESLKAKLCVQGAALIY 332

Query:   131 EYFDKRNIPYKKCGKLIVALN-EQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG 189
             EY  ++ I YK+CGKLIVA+  E++  L  LYER +QN V+ +RL+  E+IK  EPYC+G
Sbjct:   333 EYCKQKGISYKQCGKLIVAVEQEEIPRLQALYERGLQNGVQGLRLIQQEDIKKKEPYCRG 392

Query:   190 VKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLN---QQVESFKENPES--------VT 238
             + AI  P TGIVD+  V     ++F E GG +  N   + +E  KE P          + 
Sbjct:   393 LMAIDCPYTGIVDYRQVALSFAQDFQEAGGFVLTNFEVKDIEMAKEIPSRSKDEMKYPII 452

Query:   239 ISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIY 298
             I   +G+ ++  Y + CAGL +D ++  SGC+ +P IVPFRG+YLLL P K +LV+GNIY
Sbjct:   453 IRNTKGEEVQCQYVVTCAGLYSDRISELSGCNPDPQIVPFRGDYLLLKPEKCYLVKGNIY 512

Query:   299 PVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLG 358
             PVPD  FPFLGVHFTPRMDGS+WLGPNAVLAFK+EGY+  DF+ R++   +   G  +L 
Sbjct:   513 PVPDSRFPFLGVHFTPRMDGSIWLGPNAVLAFKREGYKPFDFNARDVMDIIIKSGLIKLV 572

Query:   359 LKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDF 416
              +   YG  EM  + F S  V  L+++I EI   DI RGP+GVRAQAL   G+LV+DF
Sbjct:   573 FQNFSYGVNEMYKACFLSATVKHLQKFIPEITVSDILRGPAGVRAQALDRDGNLVEDF 630

GO:0047545 "2-hydroxyglutarate dehydrogenase activity" evidence=IEA

GO:0044267 "cellular protein metabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q55GI5	L2HDH_DICDI	1, ., 1, ., 9, 9, ., 2	0.4225	0.8097	0.8587	yes	N/A
Q91YP0	L2HDH_MOUSE	1, ., 1, ., 9, 9, ., 2	0.5041	0.7336	0.7478	yes	N/A
Q9N4Z0	L2HDH_CAEEL	1, ., 1, ., 9, 9, ., 2	0.5329	0.7589	0.8290	yes	N/A
A7MBI3	L2HDH_BOVIN	1, ., 1, ., 9, 9, ., 2	0.5013	0.7336	0.7494	yes	N/A
Q9H9P8	L2HDH_HUMAN	1, ., 1, ., 9, 9, ., 2	0.5145	0.7758	0.7926	yes	N/A
Q5R9N7	L2HDH_PONAB	1, ., 1, ., 9, 9, ., 2	0.4722	0.6828	0.7708	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.99	0.921
4th Layer	1.1.99.2	0.914

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	473
PRK11728	393	PRK11728, PRK11728, hydroxyglutarate oxidase; Prov	0.0
COG0579	429	COG0579, COG0579, Predicted dehydrogenase [General	1e-108
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	6e-46
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	4e-28
PRK11728	393	PRK11728, PRK11728, hydroxyglutarate oxidase; Prov	6e-12
PTZ00383	497	PTZ00383, PTZ00383, malate:quinone oxidoreductase;	1e-09
TIGR02352	337	TIGR02352, thiamin_ThiO, glycine oxidase ThiO	1e-06
COG0578	532	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase	2e-06
COG0579	429	COG0579, COG0579, Predicted dehydrogenase [General	1e-05
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	3e-04
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	5e-04
TIGR01320	483	TIGR01320, mal_quin_oxido, malate:quinone-oxidored	8e-04
TIGR01988	387	TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hyd	0.002
TIGR01373	407	TIGR01373, soxB, sarcosine oxidase, beta subunit f	0.002
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	0.002
COG0578	532	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase	0.003
COG1232	444	COG1232, HemY, Protoporphyrinogen oxidase [Coenzym	0.004

>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional

 Score =  523 bits (1350), Expect = 0.0
 Identities = 178/362 (49%), Positives = 235/362 (64%), Gaps = 3/362 (0%)

Query: 56  ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPG 115
           A+YD V++GGGIVG++TA +L+  YP  +I ++EKE     HQTGHNSGV+HAG+YY PG
Sbjct: 1   AMYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPG 60

Query: 116 TLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQ-LEPLHDLYERSIQNNVKDVRL 174
           +LKA+ C  G      + D+  IPY++CGKL+VA +E  LE +  LYER+  N + +V  
Sbjct: 61  SLKARFCRRGNEATKAFCDQHGIPYEECGKLLVATSELELERMEALYERARANGI-EVER 119

Query: 175 VSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENP 234
           + AEE++  EP  +G+ AI  P+TGIVD+  V   M E     GGEIRL  +V +  E+ 
Sbjct: 120 LDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHA 179

Query: 235 ESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVR 294
             V + T QG+  E+   + CAGL +D +A  +G   +  IVPFRGEY  L P K  LV 
Sbjct: 180 NGVVVRTTQGE-YEARTLINCAGLMSDRLAKMAGLEPDFRIVPFRGEYYRLAPEKNQLVN 238

Query: 295 GNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGF 354
             IYPVPDP FPFLGVH T  +DGSV +GPNAVLAFK+EGYR RDFS+R+L   L YPGF
Sbjct: 239 HLIYPVPDPAFPFLGVHLTRMIDGSVTVGPNAVLAFKREGYRKRDFSLRDLLEILTYPGF 298

Query: 355 WRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVD 414
           W+L  K+ R G  EM  S   S  +  +++Y   +   D+Q  P+GVRAQA+S  G LVD
Sbjct: 299 WKLAQKHWRSGLGEMKNSLSKSGYLRLVQKYCPSLTLSDLQPYPAGVRAQAVSRDGKLVD 358

Query: 415 DF 416
           DF
Sbjct: 359 DF 360

Length = 393

>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function prediction only]

 Score =  328 bits (843), Expect = e-108
 Identities = 140/365 (38%), Positives = 201/365 (55%), Gaps = 6/365 (1%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
           YDVV++GGGI+G ATA EL    P + + L+EKE  +    + +NSGV+HAG+YY PG+L
Sbjct: 4   YDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSL 63

Query: 118 KAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVS 176
           KAKLCV G    +    +  IP+  CGKL VA  E ++E L  LYER   N V D+ ++ 
Sbjct: 64  KAKLCVAGNINEFAICKQLGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILD 123

Query: 177 AEEIKTIEPY--CKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENP 234
            EEIK +EP      V A+  P+ GIVD G +TR + EE    G E+RLN +V   ++  
Sbjct: 124 KEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQS 183

Query: 235 ESVT-ISTKQGD-HLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHL 292
           + V  ++T  G+  LE+ + +  AGL AD +A  +G   +  I P RGEYL+L+   + L
Sbjct: 184 DGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPEDFKIFPVRGEYLVLDNEVKAL 243

Query: 293 VRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLA-FKKEGYRWRDFSVRELFSTLRY 351
           +R  IYPVP+P  P LGVH TP +DGS+  GPNA+ +    +G R  DF + +       
Sbjct: 244 LRHKIYPVPNPGLPGLGVHHTPTIDGSLLFGPNALDSPKFLKGDRGVDFDLLDSVRKANS 303

Query: 352 PGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGD 411
            G   LG+K     +   I       R+  L   I E +  D     +G+R+Q L++   
Sbjct: 304 RGMPDLGIKNNVLANYAGIRPILKEPRLPALDFIIPEAKDEDWFINVAGIRSQGLTADPA 363

Query: 412 LVDDF 416
           +    
Sbjct: 364 IAGGV 368

Length = 429

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score =  159 bits (404), Expect = 6e-46
 Identities = 64/236 (27%), Positives = 110/236 (46%), Gaps = 16/236 (6%)

Query: 59  DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLK 118
           DVVV+GGGIVG++TA EL      + + L+E+  +L    +G N+G++H G+  +   L 
Sbjct: 1   DVVVIGGGIVGLSTAYELAR--RGLSVTLLERG-DLASGASGRNAGLLHPGLRKERAPLL 57

Query: 119 AKLCVEGMNLAYEYFDKRNIP--YKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLV 175
           A+L +E  +L  E  ++  I   +++ G L++A +E +L+ L  L        +  V L+
Sbjct: 58  ARLALESRDLWRELIEELGIDCDFRRTGVLVLARDEAELDALRRLAAALRALGL-PVELL 116

Query: 176 SAEEIKTIEPYCKG--VKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKEN 233
            AEE++ +EP         +  P+ G VD   + R +      LG EI    +V   +  
Sbjct: 117 DAEELRELEPGLSPGIRGGLFYPDGGHVDPARLLRALARAAEALGVEILEGTEVTGLERE 176

Query: 234 PESVTISTKQGDHLESSYALVCAGLQAD------EMALKSGCSLEPAIVPFRGEYL 283
              VT+ T+ G  + +   +       D      E  L++   L PA+       L
Sbjct: 177 GGGVTVETEDG-EIRADKVVNADSSGEDIDYLLLEELLEAARRLFPALADADILLL 231

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score =  114 bits (287), Expect = 4e-28
 Identities = 80/323 (24%), Positives = 124/323 (38%), Gaps = 25/323 (7%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
            DVV++GGGIVG++ A  L        + ++E   E G    G N+G + A      G L
Sbjct: 5   MDVVIIGGGIVGLSAAYYLAERGA--DVTVLEAG-EAGGGAAGRNAGGILAPWASPGGEL 61

Query: 118 KAKLCVEGMNLAYEYFDK------RNIPYKKCGKLIVALNEQLEPLHDLY--ERSIQNNV 169
           +        +L+   + +           ++ G L +A  E L+ L  L      ++   
Sbjct: 62  EV---RPLADLSLALWRELSEELGTGAGLRRRGLLDLAAREGLKGLAQLERLAAELEAAG 118

Query: 170 KDVRLVSAEEIKTIEPYCKG---VKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQ 226
           +D  L+ A E   +EP          +  P  G +D  L+TR +     ELG  I     
Sbjct: 119 EDAELLDAAEAAELEPALGPDFVCGGLFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGT 178

Query: 227 -VESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLL 285
            V S + +   V + T  G  +E+   ++ AG  A E+A   G  L   + P RG+ L  
Sbjct: 179 PVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAGELAATLG-ELPLPLRPVRGQALTT 236

Query: 286 NPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWR-DFSVRE 344
            P +  L  G    V        G +  PR DG + +G              R D  + E
Sbjct: 237 EPPEGLLADGLAPVVLV--VDDGGGYIRPRGDGRLRVGGTDEEGGDDPSDPEREDLVIAE 294

Query: 345 LFSTLR--YPGFWRLGLKYTRYG 365
           L    R   PG    G++    G
Sbjct: 295 LLRVARALLPGLADAGIEAAWAG 317

Length = 387

>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional

 Score = 66.8 bits (164), Expect = 6e-12
 Identities = 21/49 (42%), Positives = 26/49 (53%)

Query: 417 GVKAIHSPHTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPEMV 465
           G+ AI  P TGIVD+  V   M E     GGEIRL  +V +  E+   V
Sbjct: 134 GLGAIFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGV 182

Length = 393

>gnl|CDD|240393 PTZ00383, PTZ00383, malate:quinone oxidoreductase; Provisional

 Score = 59.8 bits (145), Expect = 1e-09
 Identities = 76/306 (24%), Positives = 129/306 (42%), Gaps = 41/306 (13%)

Query: 53  QSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGM---HQTGHNSGVVHAG 109
               +YDVV+VGGG+ G A    L       KI L+E+  +  +   H   +NS  +H G
Sbjct: 41  LGSDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFALVASHGK-NNSQTIHCG 99

Query: 110 -IYYKPGTLKAKLCVEGMNLAYEYF-----DKRNIPYKKCGKLIVALNE-QLEPLHDLYE 162
            I       KA+      ++   Y       +R+    K  K+++ + E + E L   Y 
Sbjct: 100 DIETNYTLEKARKVKRQADMLRNYLTKLPPSERDSIIFKMQKMVLGVGEKECEFLEKRYP 159

Query: 163 RSIQNNVKDVRLVSAEEIKTIEPYCKGVK-----------AIHSPN--TGIVDWGLVTR- 208
              +     ++L+  +EI  +EP    +K           A++ PN  T  VD+  ++  
Sbjct: 160 -VFKELFPSMQLLDKKEIHRVEP-RVVLKNNHTLREEPLAALYVPNELTT-VDYQKLSES 216

Query: 209 -VMGEEFCEL--GGEIR--LNQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQADE 262
            V       L  G +I   LN +V + + + +S+  I T +G+ + + + +V A   +  
Sbjct: 217 FVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRGE-IRARFVVVSACGYSLL 275

Query: 263 MALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPR--MDGSV 320
            A K G  LE + +P  G +        +++ G +Y V +P  PF  VH  P     G  
Sbjct: 276 FAQKMGYGLEYSCLPVAGSFYF----SGNILNGKVYTVQNPALPFAAVHGDPDIIAKGKT 331

Query: 321 WLGPNA 326
             GP A
Sbjct: 332 RFGPTA 337

Length = 497

>gnl|CDD|233831 TIGR02352, thiamin_ThiO, glycine oxidase ThiO

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 52/197 (26%), Positives = 83/197 (42%), Gaps = 35/197 (17%)

Query: 140 YKKCGKLIVALNE----QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG--VKAI 193
           Y +CG L+VA +E     L  L DL   +      +V  +S   ++ +EPY  G    A+
Sbjct: 71  YHQCGTLVVAFDEDDVEHLRQLADLQSATGM----EVEWLSGRALRRLEPYLSGGIRGAV 126

Query: 194 HSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYA 252
             P+   VD   + + + +   +LG EI  + +V+  +   E VT I T  GD  ++   
Sbjct: 127 FYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSGDV-QADQV 185

Query: 253 LVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHF 312
           ++ AG  A E+       L   + P RG+           +R     VP  N P   V +
Sbjct: 186 VLAAGAWAGEL-------LPLPLRPVRGQ----------PLRLEAPAVPLLNRPLRAVVY 228

Query: 313 T------PRMDGSVWLG 323
                  PR DG + +G
Sbjct: 229 GRRVYIVPRRDGRLVVG 245

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 337

>gnl|CDD|223651 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYY 112
           +DV+V+GGGI G   AR+       +K+ LVEK  +L    +  ++ ++H G+ Y
Sbjct: 13  FDVIVIGGGITGAGIARDAAGR--GLKVALVEK-GDLASGTSSRSTKLIHGGLRY 64

Length = 532

>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function prediction only]

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 20/54 (37%), Positives = 31/54 (57%)

Query: 412 LVDDFGVKAIHSPHTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPEMV 465
           L+++  V A+  P  GIVD G +TR + EE    G E+RLN +V   ++  + V
Sbjct: 133 LLNEGAVAALLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDGV 186

Length = 429

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 11/62 (17%), Positives = 17/62 (27%), Gaps = 1/62 (1%)

Query: 402 RAQALSSSGDLVDDFGVKAIHSPHTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKEN 461
             +       L        +  P  G VD   + R +      LG EI    +V   +  
Sbjct: 118 AEELRELEPGLSPGI-RGGLFYPDGGHVDPARLLRALARAAEALGVEILEGTEVTGLERE 176

Query: 462 PE 463
             
Sbjct: 177 GG 178

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 39/190 (20%), Positives = 59/190 (31%), Gaps = 57/190 (30%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
           YDVV+VG G  G + AR L      + + ++EK  E G                      
Sbjct: 4   YDVVIVGAGPAGSSAARRLAKAG--LDVLVLEKGSEPG---------------------- 39

Query: 118 KAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSA 177
                                  K C    ++    LE L   ++  I+  V   R+   
Sbjct: 40  ----------------------AKPCCGGGLSPRA-LEELIPDFDEEIERKVTGARIYFP 76

Query: 178 EEIKTIE-PYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPES 236
            E   IE P  +G          IVD     + + E   E G E+    +V       + 
Sbjct: 77  GEKVAIEVPVGEGY---------IVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDG 127

Query: 237 VTISTKQGDH 246
           V +  + GD 
Sbjct: 128 VVVGVRAGDD 137

Length = 396

>gnl|CDD|130387 TIGR01320, mal_quin_oxido, malate:quinone-oxidoreductase

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 59/233 (25%), Positives = 94/233 (40%), Gaps = 33/233 (14%)

Query: 201 VDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPES---VTI-STKQGDHLE--SSYALV 254
           VD+G +T+ +     + G  IR   +V + K   +    VT+ +T+ G      + +  V
Sbjct: 175 VDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFV 234

Query: 255 CAGLQADEMALKSGCSLEP--AIVPFRGEYLLL-NP--AKQHLVRGNIYPVPDPNFPFLG 309
            AG  A  +  KSG       A  P  G +L   NP   +QH  R  +Y       P + 
Sbjct: 235 GAGGGALPLLQKSGIPEVKGFAGFPVSGLFLRCGNPELTEQH--RAKVYGQASVGAPPMS 292

Query: 310 V-HFTPR-MDGSVWL--GPNAVLA--FKKEGYRWRDFSVRELFSTLR------YPGFWRL 357
           V H   R +DG  WL  GP A  +  F K G      S+ +L  ++R        G    
Sbjct: 293 VPHLDTRVVDGKKWLLFGPYAGWSPKFLKHG------SILDLPLSIRPDNLLSMLGVGLT 346

Query: 358 GLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSG 410
            +  T+Y   ++  S     RV+ L+++  E    D +   +G R Q +    
Sbjct: 347 EMDLTKYLIGQLRKS--EEERVSALREFYPEAIDSDWELIVAGQRVQVIKKDP 397

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase [Energy metabolism, TCA cycle]. Length = 483

>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQT 99
          D+V+VGGG VG+A A  L  +   +K+ L+E    L     
Sbjct: 1  DIVIVGGGPVGLALALALARS-GGLKVALIEA-TPLPAPAD 39

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4,) and UbiF (which acts at position 5,). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6,) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 387

>gnl|CDD|233383 TIGR01373, soxB, sarcosine oxidase, beta subunit family, heterotetrameric form

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 14/135 (10%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
           YDV++VGGG  G+ATA  L   +    + ++EK   LG   TG N+ +V +   Y     
Sbjct: 31  YDVIIVGGGGHGLATAYYLAKEHGITNVAVLEK-GWLGGGNTGRNTTIVRSNYLYPESAE 89

Query: 118 KAKLCV---EGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYER---SIQNNVKD 171
             +  +   EG++    Y    N+ + + G L +  +       D   R   +++ N  D
Sbjct: 90  LYEHAMKLWEGLSQDLNY----NVMFSQRGVLNLCHSTA---DMDDGARRVNAMRLNGVD 142

Query: 172 VRLVSAEEIKTIEPY 186
             L+S E+++ + P 
Sbjct: 143 AELLSPEQVRRVIPI 157

This model describes the beta subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms [Energy metabolism, Amino acids and amines]. Length = 407

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEK 90
           DV +VG G  G+A A  L      + + L+E+
Sbjct: 3  LDVAIVGAGPAGLALALALARA--GLDVTLLER 33

Length = 387

>gnl|CDD|223651 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEK 42
          +D++V+GGGI G   AR+   +   +K  LVEK
Sbjct: 13 FDVIVIGGGITGAGIARDAAGR--GLKVALVEK 43

Length = 532

>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism]

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 11/36 (30%), Positives = 22/36 (61%)

Query: 60 VVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
          + ++GGGI G++ A  L+   P +++ L E +  +G
Sbjct: 3  IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVG 38

Length = 444

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	473
KOG2665|consensus	453		100.0
PRK11728	393	hydroxyglutarate oxidase; Provisional	100.0
COG0579	429	Predicted dehydrogenase [General function predicti	100.0
PTZ00383	497	malate:quinone oxidoreductase; Provisional	100.0
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	100.0
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	100.0
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	100.0
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	100.0
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	100.0
PRK05257	494	malate:quinone oxidoreductase; Validated	100.0
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	100.0
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	100.0
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	100.0
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	100.0
PRK13339	497	malate:quinone oxidoreductase; Reviewed	100.0
KOG2844|consensus	856		100.0
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	100.0
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	100.0
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	100.0
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	100.0
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	100.0
KOG2853|consensus	509		100.0
PLN02464	627	glycerol-3-phosphate dehydrogenase	100.0
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	100.0
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.97
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	99.96
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.96
KOG2820|consensus	399		99.95
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	99.94
KOG3923|consensus	342		99.89
KOG0042|consensus	680		99.88
KOG2852|consensus	380		99.88
COG2081	408	Predicted flavoproteins [General function predicti	99.69
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.61
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.59
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.57
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.54
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.54
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	99.51
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	99.49
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.49
PLN02463	447	lycopene beta cyclase	99.47
PLN02697	529	lycopene epsilon cyclase	99.46
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	99.45
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	99.44
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.44
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.44
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.43
PRK07121	492	hypothetical protein; Validated	99.43
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.41
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.41
PRK10157	428	putative oxidoreductase FixC; Provisional	99.41
PRK08274	466	tricarballylate dehydrogenase; Validated	99.4
PRK06847	375	hypothetical protein; Provisional	99.4
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	99.4
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	99.39
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.38
PRK06185	407	hypothetical protein; Provisional	99.38
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	99.38
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.37
PRK08244	493	hypothetical protein; Provisional	99.37
PRK07804	541	L-aspartate oxidase; Provisional	99.37
PRK06184	502	hypothetical protein; Provisional	99.37
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.36
PRK06834	488	hypothetical protein; Provisional	99.36
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	99.35
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	99.35
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	99.35
PRK07190	487	hypothetical protein; Provisional	99.34
TIGR00275	400	flavoprotein, HI0933 family. The model when search	99.33
PRK08013	400	oxidoreductase; Provisional	99.33
PRK10015	429	oxidoreductase; Provisional	99.32
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	99.32
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.31
PRK06175	433	L-aspartate oxidase; Provisional	99.31
PRK09126	392	hypothetical protein; Provisional	99.3
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.3
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.3
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	99.29
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.29
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	99.29
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	99.28
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	99.28
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	99.28
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	99.27
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	99.27
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	99.27
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	99.27
PRK08163	396	salicylate hydroxylase; Provisional	99.26
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	99.26
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	99.26
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	99.26
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	99.25
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	99.25
PRK12842	574	putative succinate dehydrogenase; Reviewed	99.24
PLN02815	594	L-aspartate oxidase	99.24
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.23
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	99.23
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	99.23
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	99.22
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	99.22
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	99.22
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.22
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.22
PRK07588	391	hypothetical protein; Provisional	99.22
PRK07395	553	L-aspartate oxidase; Provisional	99.22
PRK08275	554	putative oxidoreductase; Provisional	99.21
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.21
PRK06126	545	hypothetical protein; Provisional	99.21
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	99.2
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	99.2
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	99.2
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.2
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	99.19
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	99.19
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	99.19
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	99.19
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	99.18
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.18
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	99.18
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	99.18
PRK06753	373	hypothetical protein; Provisional	99.18
PRK08132	547	FAD-dependent oxidoreductase; Provisional	99.17
PRK08071	510	L-aspartate oxidase; Provisional	99.17
PRK07512	513	L-aspartate oxidase; Provisional	99.17
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	99.17
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.17
PRK08401	466	L-aspartate oxidase; Provisional	99.16
PRK02106	560	choline dehydrogenase; Validated	99.15
PRK07233	434	hypothetical protein; Provisional	99.15
PRK06996	398	hypothetical protein; Provisional	99.14
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	99.13
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	99.13
PRK07045	388	putative monooxygenase; Reviewed	99.13
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	99.13
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	99.13
PRK12839	572	hypothetical protein; Provisional	99.13
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.13
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	99.12
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	99.12
PRK05868	372	hypothetical protein; Validated	99.12
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	99.12
PRK07236	386	hypothetical protein; Provisional	99.12
PLN02661	357	Putative thiazole synthesis	99.11
PLN02985	514	squalene monooxygenase	99.11
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	99.11
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	99.11
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.1
PRK09077	536	L-aspartate oxidase; Provisional	99.09
PRK11445	351	putative oxidoreductase; Provisional	99.09
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	99.08
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	99.07
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	99.07
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	99.07
PRK06116	450	glutathione reductase; Validated	99.06
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	99.06
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	99.05
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.04
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	99.03
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	99.03
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	99.02
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	99.02
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	99.02
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	99.02
PRK06475	400	salicylate hydroxylase; Provisional	99.01
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	99.01
PRK08294	634	phenol 2-monooxygenase; Provisional	99.0
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	99.0
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.99
PLN02676	487	polyamine oxidase	98.99
PRK07538	413	hypothetical protein; Provisional	98.99
PRK12416	463	protoporphyrinogen oxidase; Provisional	98.98
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	98.97
PRK14694	468	putative mercuric reductase; Provisional	98.97
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.97
PRK07208	479	hypothetical protein; Provisional	98.97
PRK09897	534	hypothetical protein; Provisional	98.96
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.95
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.94
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.94
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.94
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	98.93
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.93
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.93
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.93
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.92
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	98.91
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.91
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.9
PLN02268	435	probable polyamine oxidase	98.9
PLN02568	539	polyamine oxidase	98.9
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.89
KOG1399|consensus	448		98.89
PTZ00058	561	glutathione reductase; Provisional	98.89
PRK06370	463	mercuric reductase; Validated	98.89
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	98.88
PTZ00367	567	squalene epoxidase; Provisional	98.88
PRK10262	321	thioredoxin reductase; Provisional	98.88
PRK14727	479	putative mercuric reductase; Provisional	98.87
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	98.87
PLN02785	587	Protein HOTHEAD	98.87
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.86
KOG2415|consensus	621		98.86
KOG1298|consensus	509		98.84
KOG2614|consensus	420		98.83
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.83
PRK13748	561	putative mercuric reductase; Provisional	98.83
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.83
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	98.82
PLN02507	499	glutathione reductase	98.82
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.81
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.81
PLN02612	567	phytoene desaturase	98.81
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	98.8
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.79
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.79
TIGR02053	463	MerA mercuric reductase. This model represents the	98.79
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	98.78
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.78
KOG2404|consensus	477		98.77
PLN02546	558	glutathione reductase	98.77
PTZ00052	499	thioredoxin reductase; Provisional	98.75
PLN02529	738	lysine-specific histone demethylase 1	98.75
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.74
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.73
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.72
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	98.71
PLN02576	496	protoporphyrinogen oxidase	98.69
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.68
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.68
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.65
KOG1335|consensus	506		98.64
COG2907	447	Predicted NAD/FAD-binding protein [General functio	98.64
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.64
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.64
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.64
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.62
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.62
KOG1238|consensus	623		98.62
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.62
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.6
PLN02328	808	lysine-specific histone demethylase 1 homolog	98.59
COG3573	552	Predicted oxidoreductase [General function predict	98.59
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	98.59
PLN02487	569	zeta-carotene desaturase	98.54
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.54
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.54
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.54
KOG0685|consensus	498		98.53
KOG2960|consensus	328		98.5
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.5
PRK07846	451	mycothione reductase; Reviewed	98.5
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.48
KOG0404|consensus	322		98.48
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.47
PLN03000	881	amine oxidase	98.47
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.47
KOG4254|consensus	561		98.46
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	98.45
PLN02976	1713	amine oxidase	98.44
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.42
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.41
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.39
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.39
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.38
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	98.38
PRK12831	464	putative oxidoreductase; Provisional	98.37
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	98.36
PLN02507	499	glutathione reductase	98.35
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.35
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.34
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.33
PLN02852	491	ferredoxin-NADP+ reductase	98.32
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.31
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.31
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.3
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	98.3
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.3
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.3
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	98.29
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.29
KOG0029|consensus	501		98.28
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.28
PRK06370	463	mercuric reductase; Validated	98.27
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	98.27
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.27
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.25
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.23
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.22
KOG1336|consensus	478		98.22
PRK07846	451	mycothione reductase; Reviewed	98.21
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	98.2
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	98.16
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.14
KOG1346|consensus	659		98.13
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.13
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.12
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.12
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.11
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.11
PLN02546	558	glutathione reductase	98.1
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.09
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.09
PTZ00058	561	glutathione reductase; Provisional	98.09
KOG2311|consensus	679		98.08
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.07
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.06
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	98.05
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.05
COG3349	485	Uncharacterized conserved protein [Function unknow	98.01
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	97.99
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	97.99
KOG0405|consensus	478		97.99
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	97.98
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	97.96
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.96
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.95
KOG1276|consensus	491		97.95
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.95
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.91
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	97.89
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	97.86
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.84
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	97.84
PRK10262	321	thioredoxin reductase; Provisional	97.8
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.8
PRK13984	604	putative oxidoreductase; Provisional	97.8
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.77
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.74
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.71
KOG4716|consensus	503		97.7
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	97.68
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.68
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.63
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.56
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.51
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	97.51
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.4
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	97.38
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.37
KOG0405|consensus	478		97.35
PTZ00188	506	adrenodoxin reductase; Provisional	97.32
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.29
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.24
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.23
KOG3855|consensus	481		97.19
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	97.18
KOG1800|consensus	468		97.15
PRK12831	464	putative oxidoreductase; Provisional	97.15
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	97.06
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	97.03
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	96.95
PRK12814	652	putative NADPH-dependent glutamate synthase small	96.93
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	96.83
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	96.75
KOG3851|consensus	446		96.7
KOG1238|consensus	623		96.63
KOG2495|consensus	491		96.48
KOG1336|consensus	478		96.44
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	96.37
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	96.35
PLN02852	491	ferredoxin-NADP+ reductase	96.17
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.14
PRK12779	944	putative bifunctional glutamate synthase subunit b	96.11
KOG0399|consensus	2142		96.0
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	95.92
KOG2665|consensus	453		95.72
KOG1439|consensus	440		95.44
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	95.38
PRK13984	604	putative oxidoreductase; Provisional	95.38
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	95.34
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	95.23
KOG2755|consensus	334		95.1
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	95.04
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	94.98
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	94.95
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	94.93
KOG0029|consensus	501		94.92
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	94.9
KOG1346|consensus	659		94.86
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	94.81
PRK14727	479	putative mercuric reductase; Provisional	94.79
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	94.66
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	94.63
COG0579	429	Predicted dehydrogenase [General function predicti	94.54
COG4716	587	Myosin-crossreactive antigen [Function unknown]	94.53
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	94.5
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	94.43
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	94.13
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	94.06
PRK13339	497	malate:quinone oxidoreductase; Reviewed	94.02
COG0569	225	TrkA K+ transport systems, NAD-binding component [	94.01
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	93.96
KOG4405|consensus	547		93.95
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	93.72
TIGR02053	463	MerA mercuric reductase. This model represents the	93.7
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	93.69
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	93.57
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.57
KOG2495|consensus	491		93.49
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	93.47
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	93.39
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	93.34
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	93.23
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.16
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.15
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	93.12
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	93.12
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	93.1
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	93.07
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.04
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.97
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	92.96
PRK11728	393	hydroxyglutarate oxidase; Provisional	92.87
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	92.84
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.81
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	92.79
PRK02106	560	choline dehydrogenase; Validated	92.79
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	92.69
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	92.68
PLN02353	473	probable UDP-glucose 6-dehydrogenase	92.56
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	92.56
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	92.53
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	92.49
PLN02785	587	Protein HOTHEAD	92.43
PRK06719	157	precorrin-2 dehydrogenase; Validated	92.39
PRK05257	494	malate:quinone oxidoreductase; Validated	92.36
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	92.3
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	92.27
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	92.13
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	92.11
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	91.99
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	91.99
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	91.94
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	91.87
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	91.8
PRK06116	450	glutathione reductase; Validated	91.73
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	91.71
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.54
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.54
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	91.5
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	91.34
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	91.26
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	91.25
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	91.22
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	91.22
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	91.22
PRK15116	268	sulfur acceptor protein CsdL; Provisional	91.18
PTZ00383	497	malate:quinone oxidoreductase; Provisional	91.11
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.04
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	91.0
PRK13748	561	putative mercuric reductase; Provisional	90.98
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	90.98
PTZ00052	499	thioredoxin reductase; Provisional	90.98
PTZ00082	321	L-lactate dehydrogenase; Provisional	90.93
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	90.8
PRK14694	468	putative mercuric reductase; Provisional	90.68
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	90.64
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	90.49
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	90.36
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	90.31
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	90.27
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	90.22
KOG2304|consensus	298		90.18
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	90.15
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	90.14
PRK04148	134	hypothetical protein; Provisional	90.1
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	89.97
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	89.92
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	89.88
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	89.8
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	89.68
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	89.56
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	89.56
PRK07417	279	arogenate dehydrogenase; Reviewed	89.52
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	89.48
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	89.42
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	89.37
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	89.08
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	89.02
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	89.0
PRK06223	307	malate dehydrogenase; Reviewed	88.95
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	88.93
PRK10015	429	oxidoreductase; Provisional	88.72
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	88.65
PRK06567	1028	putative bifunctional glutamate synthase subunit b	88.61
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	88.6
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	88.59
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	88.38
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	88.37
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	88.33
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	88.29
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	88.16
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	88.1
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	88.03
KOG4716|consensus	503		88.01
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	87.75
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	87.73
PRK11730	715	fadB multifunctional fatty acid oxidation complex	87.64
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	87.64

>KOG2665|consensus

Probab=100.00  E-value=2.4e-48  Score=340.97  Aligned_cols=370  Identities=55%  Similarity=0.963  Sum_probs=349.8

Q ss_pred             CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHH
Q psy7710          55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFD  134 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (473)
                      ..++|+||||||+.|++.|.+|.-+.|+.+|.|+|+...++-..|++|+|.+|+|++|.|+++++++|.++.++.+++++
T Consensus        46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~  125 (453)
T KOG2665|consen   46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCD  125 (453)
T ss_pred             cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHhh
Confidence            46799999999999999999999998999999999998999999999999999999999999999999999999999999


Q ss_pred             hcCCCCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHH
Q psy7710         135 KRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEE  213 (473)
Q Consensus       135 ~~~~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~  213 (473)
                      +..+++.+.|.+.++... +...++.+++...++++++.++++..++.+++|......++++|..|.+|...++..+.+.
T Consensus       126 e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~ed  205 (453)
T KOG2665|consen  126 EKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFGED  205 (453)
T ss_pred             hcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHHHHHH
Confidence            999999999999999999 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCcEEEeCceEEEEEEcCCe-----EEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcC
Q psy7710         214 FCELGGEIRLNQQVESFKENPES-----VTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPA  288 (473)
Q Consensus       214 ~~~~Gv~i~~~~~V~~i~~~~~~-----v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~  288 (473)
                      ++..|.++.+|-++..+..++..     +.|....+++++++.||-|+|..++.+....|++.++.+.|.+|.++.+.+.
T Consensus       206 F~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~sgc~~dPriVpfrG~ylll~~e  285 (453)
T KOG2665|consen  206 FDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAALSGCELDPRIVPFRGEYLLLKPE  285 (453)
T ss_pred             HHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHHHhCCCCCCeeeeccchhhhcChH
Confidence            99999999999999999876542     4566666789999999999999999999999999999999999999999999


Q ss_pred             cccCcccccccCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhhchHH
Q psy7710         289 KQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKE  368 (473)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (473)
                      +...+++.+||.|++++|+.|+++.|+.+|.+++|+.+...+++++|.+.++++.++.+.+++.++.++.++++.+++.+
T Consensus       286 k~h~vk~niyPvpd~RFpflGvhftPrm~g~iwlgpnavLa~kregy~~g~i~~~~~~e~i~~sg~~k~~~k~f~ygv~e  365 (453)
T KOG2665|consen  286 KLHLVKGNIYPVPDPRFPFLGVHFTPRMDGSIWLGPNAVLAVKREGYLNGDISFGDLVEWIEYSGDTKLASKKFDYGVNE  365 (453)
T ss_pred             HhccccCceeeCCCCCCccccccccCcCCCceecCCCceEEEEEEeeccccccccchhhheecCchHHHHHhhcCcccch
Confidence            88889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEeeCCCCccccccceeeeecCC
Q psy7710         369 MIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFGVKAIHSPH  425 (473)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d~~p~~g~~~~~g~~~~  425 (473)
                      +....|....+..+++++|+|.+.+|.+..+|+|.+.++.||..+++|.+..| .+|
T Consensus       366 ~~k~~f~~aqvk~lqkyiPdlk~~di~rGpaGvRaqald~~gnlv~DFVfd~g-~g~  421 (453)
T KOG2665|consen  366 MYKEKFIAAQVKELQKYIPDLKDSDIERGPAGVRAQALDGDGNLVDDFVFDGG-EGH  421 (453)
T ss_pred             HhhhhhhhhhhHHHHHhCccccccccccCcccccchhccCCCCCchheEEecC-ccc
Confidence            99999999999999999999999999999999998888999998999988876 444

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=100.00  E-value=2.4e-46  Score=367.77  Aligned_cols=387  Identities=47%  Similarity=0.781  Sum_probs=324.5

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHhc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKR  136 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (473)
                      ++||+|||||++|+++|++|+++.+|.+|+|+||+..++.++|++|.|++++++.+.+...+.+++..+.+.|.++.++.
T Consensus         2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   81 (393)
T PRK11728          2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQH   81 (393)
T ss_pred             CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHHHHc
Confidence            47999999999999999999998678999999998668899999999999998766676667889999999999999999


Q ss_pred             CCCCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHH
Q psy7710         137 NIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC  215 (473)
Q Consensus       137 ~~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  215 (473)
                      ++++.++|.+.++.++ +.+.+...++.....|. ..++++.+++.+++|.+...++++.+.++++++..+++.|.+.++
T Consensus        82 ~~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~-~~~~l~~~el~~~~P~l~~~~al~~p~~g~vd~~~l~~aL~~~~~  160 (393)
T PRK11728         82 GIPYEECGKLLVATSELELERMEALYERARANGI-EVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAELIQ  160 (393)
T ss_pred             CCCcccCCEEEEEcCHHHHHHHHHHHHHHHHCCC-cEEEeCHHHHHHhCCCccccceEEcCCceEECHHHHHHHHHHHHH
Confidence            9999999999999887 78888888888888888 689999999999999887788999999999999999999999999


Q ss_pred             HcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcCcccCccc
Q psy7710         216 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRG  295 (473)
Q Consensus       216 ~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~~~~~~  295 (473)
                      +.|++++++++|.++..+++++.|++.++ +++||.||+|+|.|+..+++.+|++.+.++.|+|||++.++......+.+
T Consensus       161 ~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~g~~~~~~v~p~rGq~~~~~~~~~~~~~~  239 (393)
T PRK11728        161 ARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMAGLEPDFRIVPFRGEYYRLAPEKNQLVNH  239 (393)
T ss_pred             hCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHhCCCCCCceEEeeeEEEEeccccccccCC
Confidence            99999999999999998888888888887 89999999999999999999999876678999999999998664445667


Q ss_pred             ccccCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhhchHHHHhhhcc
Q psy7710         296 NIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFP  375 (473)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (473)
                      .+|+.|+...+..++|++|+.+|++++|++.....++++|++...+..++.+..+..+++.+..+++.+++.+++.+...
T Consensus       240 ~v~~~p~~~~~~~g~~~~p~~~G~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (393)
T PRK11728        240 LIYPVPDPAFPFLGVHLTRMIDGSVTVGPNAVLAFKREGYRKRDFSLRDLLEILTYPGFWKLAQKHWRSGLGEMKNSLSK  319 (393)
T ss_pred             ceecCCCCCCCcceEEeecCCCCCEEECCCcceehhhcCccccCCCHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhH
Confidence            78888887777778999999999999999766555556666543455566677777788777767788888877555556


Q ss_pred             hhHHHHHhhcccCCCCCCcccCCCeeceEeeCCCCccccccceeeeecC-C-ccccchH-HHHHHHHHHHHhh
Q psy7710         376 SMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDDFGVKAIHSP-H-TGIVDWG-LVTRVMGEEFCEL  445 (473)
Q Consensus       376 ~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d~~p~~g~~~~~g~~~-~-~gi~~~~-~~a~~~g~~~~~~  445 (473)
                      ...++.+.+++|.|...++.+.|+|+||...++|+.|+.+|+|...... | .||-+.| ..++.+|+.+++.
T Consensus       320 ~~~~~~a~~~~P~l~~~~i~~~~~G~Rp~~~~~d~~~~~d~~i~~~~~~~~~~~~~spg~t~s~~ia~~v~~~  392 (393)
T PRK11728        320 SGYLRLVQKYCPSLTLSDLQPYPAGVRAQAVSRDGKLVDDFLFVETPRSLHVCNAPSPAATSSLPIGEHIVSK  392 (393)
T ss_pred             HHHHHHHHHhCCCCCHHHcccCCCceeeeeeCCCCCccCceEEecCCCEEEEcCCCCchHHccHHHHHHHHhh
Confidence            6778999999999999999999999999555899999999988753110 0 1111222 4466777777653

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=100.00  E-value=2.1e-41  Score=322.40  Aligned_cols=274  Identities=44%  Similarity=0.749  Sum_probs=257.6

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK  135 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (473)
                      .++||+|||||++|+++|++|++..|+++|+|+||.+.++..+|++|+|.+|.+.+|.++++..+++..+.+.+.+++++
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq   81 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ   81 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999976699999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcc--cceeEecCCccceeHHHHHHHHHH
Q psy7710         136 RNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCK--GVKAIHSPNTGIVDWGLVTRVMGE  212 (473)
Q Consensus       136 ~~~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~l~~  212 (473)
                      ++++|..+|.+.+++++ +.+.++.+++.+.+.++...+.++++++.+++|.+.  ..++++.|..+.+|+..++..|.+
T Consensus        82 ~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~e  161 (429)
T COG0579          82 LGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAE  161 (429)
T ss_pred             hCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHHH
Confidence            99999999999999999 999999999999999995589999999999999998  589999999999999999999999


Q ss_pred             HHHHcCcEEEeCceEEEEEEcCC-eEEEEcCCCcE-EEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcCcc
Q psy7710         213 EFCELGGEIRLNQQVESFKENPE-SVTISTKQGDH-LESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQ  290 (473)
Q Consensus       213 ~~~~~Gv~i~~~~~V~~i~~~~~-~v~v~~~~g~~-i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~  290 (473)
                      .++++|+++++|++|+.|++.++ .+.+.+++|++ ++|+.||+|+|.+|..|++++|++.+..+.|++|+++.+++...
T Consensus       162 ~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~la~~~g~~~~~~~~P~~G~y~~~~~~~~  241 (429)
T COG0579         162 EAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADPLAQMAGIPEDFKIFPVRGEYLVLDNEVK  241 (429)
T ss_pred             HHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHHHHHHhCCCcccccCccceEEEEEccccc
Confidence            99999999999999999999887 56678888855 99999999999999999999999977889999999999998666


Q ss_pred             cCcccccccCCCCCCCccEEEEecCCCCeEEECCCcccc
Q psy7710         291 HLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLA  329 (473)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~  329 (473)
                      ..+++.+|+.|.+..|+.++++.|+.||.+++|+++.+.
T Consensus       242 ~~~~~~Iy~~p~~~~p~~gV~~~~~idG~~l~GP~A~~~  280 (429)
T COG0579         242 ALLRHKIYPVPNPGLPGLGVHHTPTIDGSLLFGPNALDS  280 (429)
T ss_pred             ccccceeecCCCCCCCCCcceeecccCCeEEECCCcccc
Confidence            678889999999999999999999999999999998876

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=100.00  E-value=2.9e-40  Score=326.88  Aligned_cols=387  Identities=22%  Similarity=0.327  Sum_probs=297.6

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCccc--CCCcceEEeeccCC-CchhHHHHHHHhHHHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQT--GHNSGVVHAGIYYK-PGTLKAKLCVEGMNLAYEY  132 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s--~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  132 (473)
                      ..+||+|||||++|+++|++|++..++.+|+||||.+.++.++|  .+|++.+|.+..+. ....+.+++..+.+.+.++
T Consensus        44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a~~aS~~~nnsg~iHag~~~~~y~~~kA~~~~~~~~~~~~~  123 (497)
T PTZ00383         44 DVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFALVASHGKNNSQTIHCGDIETNYTLEKARKVKRQADMLRNY  123 (497)
T ss_pred             CcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchhhcccCCCCCCccccceeehhcCCHHHHHHHHHHHHHHHHH
Confidence            56899999999999999999999754579999999866776666  55777777765321 2234567778888888888


Q ss_pred             HHhcCC-----CCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcc----------cceeEecC
Q psy7710         133 FDKRNI-----PYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCK----------GVKAIHSP  196 (473)
Q Consensus       133 ~~~~~~-----~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~----------~~~~~~~~  196 (473)
                      ++++..     .+.++|.+.++.++ +.+.+++.++.+++.+. ++++++++++.+++|.+.          ..++++.|
T Consensus       124 ~~~L~~~~~~~~~~~~G~l~va~~e~e~~~L~~~~~~~~~~~~-~~e~ld~~el~e~eP~v~~~~~~~~~~e~~~Al~~p  202 (497)
T PTZ00383        124 LTKLPPSERDSIIFKMQKMVLGVGEKECEFLEKRYPVFKELFP-SMQLLDKKEIHRVEPRVVLKNNHTLREEPLAALYVP  202 (497)
T ss_pred             HHHhcccccccceeeCCEEEEEECHHHHHHHHHHHHHHHccCC-CeEEECHHHHHHhCcccccCccccccccceEEEEeC
Confidence            876432     35678999999888 88889888888887665 789999999999999863          36889999


Q ss_pred             Cc-cceeHHHHHHHHHHHHHH----cC--cEEEeCceEEEEEEc-CCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcC
Q psy7710         197 NT-GIVDWGLVTRVMGEEFCE----LG--GEIRLNQQVESFKEN-PESVTISTKQGDHLESSYALVCAGLQADEMALKSG  268 (473)
Q Consensus       197 ~~-~~~~~~~~~~~l~~~~~~----~G--v~i~~~~~V~~i~~~-~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g  268 (473)
                      .+ +.+||..++..|.+.+++    +|  ++|+++++|++|..+ ++.+.|+|.+| +++||.||+|+|+|+..|++++|
T Consensus       203 ~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~G  281 (497)
T PTZ00383        203 NELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKMG  281 (497)
T ss_pred             CCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHhC
Confidence            87 589999999999999998    78  789999999999987 55678999988 89999999999999999999999


Q ss_pred             CCCCCceeeeeeEEEEeCcCcccCcccccccCCCCCCCccEEEEecCC--CCeEEECCCccccccccCcccccchhHHHh
Q psy7710         269 CSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRM--DGSVWLGPNAVLAFKKEGYRWRDFSVRELF  346 (473)
Q Consensus       269 ~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~  346 (473)
                      +..+.++.|++|+++.+..    .+++.+|+.+++..|+.++|+.|+.  +|.+++|+++.+.+.++.|+..+.  .|++
T Consensus       282 i~~~~~i~Pv~G~~~~~~~----~~~~kVY~v~~p~~Pf~~vH~d~~i~~~g~~~~GP~A~~~~~~e~y~~~~~--~d~~  355 (497)
T PTZ00383        282 YGLEYSCLPVAGSFYFSGN----ILNGKVYTVQNPALPFAAVHGDPDIIAKGKTRFGPTALPLPLLERYNMSSL--PDFL  355 (497)
T ss_pred             CCCCCCEEecCceEEEcCh----hhcCceecCCCCCCCCcCccCCCccCCCCeEEEccCcccchHHhCCCCCch--HHHH
Confidence            9878899999999988852    5678899999999999999999994  888999999999988888865443  2222


Q ss_pred             --------------hhccCCcchhccchhhhhchHHHHhhhcchhHHHHHhhcccCCCCCCccc--CCCeeceEeeCCCC
Q psy7710         347 --------------STLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQR--GPSGVRAQALSSSG  410 (473)
Q Consensus       347 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~--~w~G~rp~~~t~d~  410 (473)
                                    +.+.+..+++++.+++.+++..    ......++.+++++|.+...++..  .++|+||+..++|.
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~----~~k~~~~~~~~~~~P~~~~~d~~~~~~~~GvR~Q~i~~~~  431 (497)
T PTZ00383        356 KVWNPDLNLLAVYFDLFKDSTMRKYVLRNFLFEVPL----LNKYLFLKDARKIVPSLTRKDLRYCVGYGGVRPQLIDKVS  431 (497)
T ss_pred             HhcCCChhHHHhHHHHhhChhHHHHHHHHHHHHHHh----cCHHHHHHHHHHhCCCCCHHHeeeccCCCceEEEEEECCC
Confidence                          2345556666666665443322    235667899999999999888875  46799999887764


Q ss_pred             ccccccceeee-ecCCccccchHHHHHHHHHHHHhhCCeEecccceeecc
Q psy7710         411 DLVDDFGVKAI-HSPHTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFK  459 (473)
Q Consensus       411 ~p~~g~~~~~g-~~~~~gi~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~  459 (473)
                      .-+   .+-+. .....|+++  .++|.-|...|-.+.+.|+...|+++-
T Consensus       432 ~~L---~~g~~~i~~~~~~i~--~~~~spgast~l~~~~~d~~~~~~~~~  476 (497)
T PTZ00383        432 KKL---LLGEGKIDPGKGIIF--NITPSPGATTCLGNAESDMREICERLG  476 (497)
T ss_pred             CeE---ecCceEEecCCCcEE--eccCCCcHHHHHHHHHHHHHHHHHHhC
Confidence            322   11111 112234444  456666666665566666555555554

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=100.00  E-value=1.9e-38  Score=313.87  Aligned_cols=352  Identities=18%  Similarity=0.190  Sum_probs=271.8

Q ss_pred             CCcccEEEEcCChHHHHHHHHHHhcCCC-CeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHH
Q psy7710          55 PALYDVVVVGGGIVGVATARELKLNYPK-MKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYF  133 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G-~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (473)
                      ..++||+|||||++|+++|++|+++. | .+|+||||+ .++.++|+++.++++.......   ...+...+.+.|.++.
T Consensus        28 ~~~~dvvIIGgGi~G~s~A~~L~~~~-g~~~V~vle~~-~~~~gas~~~~g~~~~~~~~~~---~~~~~~~s~~l~~~l~  102 (407)
T TIGR01373        28 KPTYDVIIVGGGGHGLATAYYLAKEH-GITNVAVLEKG-WLGGGNTGRNTTIVRSNYLYPE---SAELYEHAMKLWEGLS  102 (407)
T ss_pred             CccCCEEEECCcHHHHHHHHHHHHhc-CCCeEEEEEcc-cccCcccccccceeeecccCcc---ccHHHHHHHHHHHHHH
Confidence            36789999999999999999999842 6 499999998 6999999999999987654322   2356677888999998


Q ss_pred             HhcCCC--CcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCccc--------ceeEecCCcccee
Q psy7710         134 DKRNIP--YKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG--------VKAIHSPNTGIVD  202 (473)
Q Consensus       134 ~~~~~~--~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~--------~~~~~~~~~~~~~  202 (473)
                      ++.+++  +.++|.+.++.++ +.+.+.+.++.++..|+ +.++++++++.+.+|.+..        .++++.+.++.++
T Consensus       103 ~~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~g~-~~~~l~~~el~~~~P~l~~~~~~~~~~~ga~~~~~~g~v~  181 (407)
T TIGR01373       103 QDLNYNVMFSQRGVLNLCHSTADMDDGARRVNAMRLNGV-DAELLSPEQVRRVIPILDFSPDARFPVVGGLLQRRGGTAR  181 (407)
T ss_pred             HHhCCCcCEEeccEEEEeCCHHHHHHHHHHHHHHHHcCC-CeEEeCHHHHHHhCCCCccccccccceeEEEEcCCCCcCC
Confidence            887654  6889999999888 77888888888888898 7899999999999997652        4788999999999


Q ss_pred             HHHHHHHHHHHHHHcCcEEEeCceEEEEEEc-CCe-EEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeee
Q psy7710         203 WGLVTRVMGEEFCELGGEIRLNQQVESFKEN-PES-VTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRG  280 (473)
Q Consensus       203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~-v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g  280 (473)
                      |..++..|.+.++++|++++.+++|+++... ++. +.|+|++| ++.|+.||+|+|+|+..+.+.+|++.  ++.|.++
T Consensus       182 p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~~l~~~~g~~~--~~~~~~~  258 (407)
T TIGR01373       182 HDAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSSVVAAMAGFRL--PIESHPL  258 (407)
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhHHHHHHcCCCC--CcCcccc
Confidence            9999999999999999999999999999754 344 45888888 89999999999999988998888764  7788899


Q ss_pred             EEEEeCcCcccCcccccccCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchhccch
Q psy7710         281 EYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLK  360 (473)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (473)
                      +++.+++.... ....+..      +...+|++|+.+|++++|++.+..   ..++... +.                  
T Consensus       259 ~~~~~~~~~~~-~~~~~~~------~~~~~y~~p~~~g~~~ig~~~~~~---~~~~~~~-~~------------------  309 (407)
T TIGR01373       259 QALVSEPLKPI-IDTVVMS------NAVHFYVSQSDKGELVIGGGIDGY---NSYAQRG-NL------------------  309 (407)
T ss_pred             eEEEecCCCCC-cCCeEEe------CCCceEEEEcCCceEEEecCCCCC---CccCcCC-CH------------------
Confidence            98877644321 1111110      122579999988999999764210   1111000 00                  


Q ss_pred             hhhhchHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEeeCCCCccc------cccceeeeecCCccccchHHH
Q psy7710         361 YTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLV------DDFGVKAIHSPHTGIVDWGLV  434 (473)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d~~p~------~g~~~~~g~~~~~gi~~~~~~  434 (473)
                                  ...+.+++.+.+++|.+.+.++.+.|+|+||+  |+|+.|+      .|+|+++||++| |+..++.+
T Consensus       310 ------------~~~~~l~~~~~~~~P~l~~~~~~~~w~G~~~~--t~D~~PiIg~~~~~gl~~a~G~~g~-G~~~ap~~  374 (407)
T TIGR01373       310 ------------PTLEHVLAAILEMFPILSRVRMLRSWGGIVDV--TPDGSPIIGKTPLPNLYLNCGWGTG-GFKATPAS  374 (407)
T ss_pred             ------------HHHHHHHHHHHHhCCCcCCCCeEEEecccccc--CCCCCceeCCCCCCCeEEEeccCCc-chhhchHH
Confidence                        01235568999999999999999999999987  8999987      488999999876 57666666


Q ss_pred             HHHHHHHHHhhCCeEe-cccceeecc
Q psy7710         435 TRVMGEEFCELGGEIR-LNQQVESFK  459 (473)
Q Consensus       435 a~~~g~~~~~~~~~~~-~~~~~~~~~  459 (473)
                      |..++++|.....+.+ .+++..||.
T Consensus       375 G~~la~li~~~~~~~~~~~f~~~Rf~  400 (407)
T TIGR01373       375 GTVFAHTLARGEPHDINAPFTLDRFH  400 (407)
T ss_pred             HHHHHHHHhCCCCCCCCcccCHhHhc
Confidence            6666666655433333 347777775

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=100.00  E-value=1.7e-38  Score=315.52  Aligned_cols=350  Identities=16%  Similarity=0.194  Sum_probs=259.9

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCC---c--------------------
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKP---G--------------------  115 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~---~--------------------  115 (473)
                      ||+|||||++|+++|++|+++  |.+|+|+|+...++.++|++|+|++++++.+..   .                    
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~--g~~V~vle~~~~~~~~aS~~n~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQA--GHEVTVIDRQPGPALETSFANAGQISPGYAAPWAAPGVPLKAIKWLFQRHAPLAIRP   79 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCCchhhhheeccCcccccccccccCCCchhhhhhhhccCCCCCeEecC
Confidence            799999999999999999999  899999999866889999999999988753211   0                    


Q ss_pred             --------------------------hhHHHHHHHhHHHHHHHHHhcCCC--CcccCeEEEEeCc-ChhhHHHHHHHHHh
Q psy7710         116 --------------------------TLKAKLCVEGMNLAYEYFDKRNIP--YKKCGKLIVALNE-QLEPLHDLYERSIQ  166 (473)
Q Consensus       116 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~l~~~~~~-~~~~~~~~~~~~~~  166 (473)
                                                ....++...+.+.|.++.++.+++  +.+.|.+.++.++ +.+.+.+.++.++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~  159 (416)
T PRK00711         80 DGDPFQLRWMWQMLRNCTASRYAVNKSRMVRLAEYSRDCLKALRAETGIQYEGRQGGTLQLFRTQQQLDAAAKDIAVLEE  159 (416)
T ss_pred             CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccCcEEEEECCHHHHHHHHHHHHHHHH
Confidence                                      011234456677888888877764  5788999999888 77888888888888


Q ss_pred             CCCCcceeeCHHHHHhhcCCcc----c-ceeEecCCccceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeE-EEE
Q psy7710         167 NNVKDVRLVSAEEIKTIEPYCK----G-VKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESV-TIS  240 (473)
Q Consensus       167 ~g~~~~~~l~~~~~~~~~p~~~----~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v-~v~  240 (473)
                      .|+ ++++++.+++.+.+|.+.    . .++++.|.++.++|..++..|.+.++++|++|+++++|+++..+++.+ .|+
T Consensus       160 ~g~-~~~~l~~~e~~~~~P~l~~~~~~~~ga~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~  238 (416)
T PRK00711        160 AGV-PYELLDRDELAAVEPALAGVRHKLVGGLRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQ  238 (416)
T ss_pred             cCC-CceecCHHHHHHhCCCccCCCccceeEEECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEE
Confidence            998 789999999999998764    2 578999999999999999999999999999999999999998877765 477


Q ss_pred             cCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcCcccCcccccccCCCCCCCccEEEEecCCCCeE
Q psy7710         241 TKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSV  320 (473)
Q Consensus       241 ~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~  320 (473)
                      ++++ +++||.||+|+|.|+..+++.+|++  .++.|++||.+.++......  .......+.   . ..+..++.+|++
T Consensus       239 t~~~-~~~a~~VV~a~G~~~~~l~~~~g~~--~pi~p~rg~~~~~~~~~~~~--~p~~~~~~~---~-~~~~~~~~~~~~  309 (416)
T PRK00711        239 TGGG-VITADAYVVALGSYSTALLKPLGVD--IPVYPLKGYSLTVPITDEDR--APVSTVLDE---T-YKIAITRFDDRI  309 (416)
T ss_pred             eCCc-EEeCCEEEECCCcchHHHHHHhCCC--cccCCccceEEEEecCCCCC--CCceeEEec---c-cCEEEeecCCce
Confidence            7776 8999999999999999998888875  47899999988664322110  000011111   1 123345557889


Q ss_pred             EECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhhchHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCe
Q psy7710         321 WLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSG  400 (473)
Q Consensus       321 ~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G  400 (473)
                      ++|++.+..    +++. ..+..                              ..+.+.+.+.++||.+.+.++.+.|+|
T Consensus       310 ~iG~~~~~~----~~~~-~~~~~------------------------------~~~~l~~~~~~~~P~l~~~~~~~~w~G  354 (416)
T PRK00711        310 RVGGMAEIV----GFDL-RLDPA------------------------------RRETLEMVVRDLFPGGGDLSQATFWTG  354 (416)
T ss_pred             EEEEEEEec----CCCC-CCCHH------------------------------HHHHHHHHHHHHCCCcccccccceeec
Confidence            999864321    1110 00100                              023445789999999999999999999


Q ss_pred             eceEeeCCCCccc------cccceeeeecCCccccchHHHHHHHHHHHHhhCCeEecc-cceeec
Q psy7710         401 VRAQALSSSGDLV------DDFGVKAIHSPHTGIVDWGLVTRVMGEEFCELGGEIRLN-QQVESF  458 (473)
Q Consensus       401 ~rp~~~t~d~~p~------~g~~~~~g~~~~~gi~~~~~~a~~~g~~~~~~~~~~~~~-~~~~~~  458 (473)
                      +||+  |+|+.|+      .|+|+++||++| |+..++.+|..+++++.....+++.. |+.+||
T Consensus       355 ~r~~--t~D~~PiIG~~~~~gl~~a~G~~g~-G~~~ap~~g~~la~li~g~~~~~~~~~f~~~Rf  416 (416)
T PRK00711        355 LRPM--TPDGTPIVGATRYKNLWLNTGHGTL-GWTMACGSGQLLADLISGRKPAIDADDLSVARY  416 (416)
T ss_pred             cCCC--CCCCCCEeCCcCCCCEEEecCCchh-hhhhhhhHHHHHHHHHcCCCCCCCccccCccCC
Confidence            9987  8999987      478999999876 57554555555555554433333332 555554

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=100.00  E-value=7e-38  Score=313.06  Aligned_cols=345  Identities=18%  Similarity=0.219  Sum_probs=250.6

Q ss_pred             CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCch--------hHHHH---HH
Q psy7710          55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGT--------LKAKL---CV  123 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~--------~~~~~---~~  123 (473)
                      +.++||+|||||++|+++|++|+++.+|.+|+|+|++ .+|.++|++|+|++.+.. .....        ...++   ..
T Consensus        22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~-~~g~GaSgrn~G~~~~~~-~~~~~~~~~~g~~~~~~l~~~~~   99 (460)
T TIGR03329        22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEAD-LCGAGASGRNGGCMLTWS-TKFFTLKRLFGEAEAARLVKASE   99 (460)
T ss_pred             CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCC-ccccccccccCccccccc-cCHHHHHHhhCHHHHHHHHHHHH
Confidence            3568999999999999999999998678999999998 789999999999765321 11111        11122   23


Q ss_pred             HhHHHHHHHHHhcCCC--CcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccc
Q psy7710         124 EGMNLAYEYFDKRNIP--YKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGI  200 (473)
Q Consensus       124 ~~~~~~~~~~~~~~~~--~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~  200 (473)
                      ...+.+.++.++.+++  +.++|.+.++.++ +.+.++...+.+++.|++.+++++.+++.+.+|.....++++.+.+++
T Consensus       100 ~~~~~~~~l~~~~~i~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~G~~~~~~l~~~e~~~~~~~~~~~~g~~~~~~g~  179 (460)
T TIGR03329       100 QAVLEIAAFCEQHNIDAQLRLDGTLYTATNPAQVGSMDPVVDALERRGINSWQRLSEGELARRTGSARHLEGFYSPVAAS  179 (460)
T ss_pred             HHHHHHHHHHHHhCCCCCcccCCEEEEecCHHHHHHHHHHHHHHHHhCCCCeEEcCHHHHHHHhCCCcceEEEEeCCCeE
Confidence            3445556666666654  6778999999887 778888888888888874368999999999888655568899999999


Q ss_pred             eeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeee
Q psy7710         201 VDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRG  280 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g  280 (473)
                      +||.+++..|.+.+++.|++|+++++|++|.. ++.+.|+|.+| +++||.||+|+|+|+..+...++    ..+.|+++
T Consensus       180 i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~~l~~~~~----~~~~p~~~  253 (460)
T TIGR03329       180 VQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMASHFPQFE----RSIAIVSS  253 (460)
T ss_pred             ECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEcccccccccChhhc----CeEEEecc
Confidence            99999999999999999999999999999975 45577888888 89999999999999888777554    25778899


Q ss_pred             EEEEeCcCcccCccccccc----CCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchh
Q psy7710         281 EYLLLNPAKQHLVRGNIYP----VPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWR  356 (473)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (473)
                      |++.+++..... ....++    ..+..  ....|++|..+|++++|+.....    .+... .++.     ...     
T Consensus       254 ~~~~t~pl~~~~-~~~~~~~~~~~~d~~--~~~~y~r~~~dgrll~G~~~~~~----~~~~~-~~~~-----~~~-----  315 (460)
T TIGR03329       254 DMVITEPAPDLL-AATGLDHGTSVLDSR--IFVHYYRSTPDGRLMLGKGGNTF----AYGGR-MLPV-----FNQ-----  315 (460)
T ss_pred             ceEecCCCcHHH-HhhcCCCCceEecch--hhhhheeECCCCcEEEcCCcccc----ccCcc-cccc-----cCC-----
Confidence            988887654211 111111    11111  11258999889999999753210    00000 0000     000     


Q ss_pred             ccchhhhhchHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEeeCCCCccc-------cccceeeeecCCcccc
Q psy7710         357 LGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLV-------DDFGVKAIHSPHTGIV  429 (473)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d~~p~-------~g~~~~~g~~~~~gi~  429 (473)
                               ..     .+.+.+.+.+.++||.|.+.++.+.|+|+||+  |+|+.|+       .|+|+++||++| |+.
T Consensus       316 ---------~~-----~~~~~l~~~~~~~fP~L~~~~i~~~W~G~~~~--t~D~~P~iG~~~~~~gl~~a~G~~G~-Gv~  378 (460)
T TIGR03329       316 ---------PS-----PYEALLTRSLRKFFPALAEVPIAASWNGPSDR--SVTGLPFFGRLNGQPNVFYGFGYSGN-GVA  378 (460)
T ss_pred             ---------ch-----HHHHHHHHHHHHhCCCcCCCeeeEEEeceeCC--CCCCCceeeeecCCCCEEEEeCcCCC-Chh
Confidence                     00     01234568899999999999999999999987  8999987       478999999886 564


Q ss_pred             chHHHHHHHHHHH
Q psy7710         430 DWGLVTRVMGEEF  442 (473)
Q Consensus       430 ~~~~~a~~~g~~~  442 (473)
                      .++.+|+.+++++
T Consensus       379 ~a~~~G~~lA~li  391 (460)
T TIGR03329       379 PSRMGGQILSSLV  391 (460)
T ss_pred             HHHHHHHHHHHHh
Confidence            4444444444444

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=100.00  E-value=2.2e-37  Score=301.84  Aligned_cols=345  Identities=26%  Similarity=0.407  Sum_probs=273.2

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHhcCC
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNI  138 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (473)
                      ||+|||||++|+++|++|+++  |.+|+|+|++ .+++++|..+.|++++.....+.....++...+.+.|+++.++.+.
T Consensus         1 DvvIIGaGi~G~~~A~~La~~--G~~V~l~e~~-~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~   77 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARR--GHSVTLLERG-DIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEEYGI   77 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHT--TSEEEEEESS-STTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CEEEECcCHHHHHHHHHHHHC--CCeEEEEeec-cccccccccccccccccccccccccccchhhhhccchhhhhhhcCc
Confidence            799999999999999999999  9999999999 8999999999999998743334445678999999999999998886


Q ss_pred             CC--cccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCccc--ceeEecCCccceeHHHHHHHHHHH
Q psy7710         139 PY--KKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG--VKAIHSPNTGIVDWGLVTRVMGEE  213 (473)
Q Consensus       139 ~~--~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~l~~~  213 (473)
                      +.  .+.|.+.+..++ +.+.+++....+...++ ..++++.+++...+|.+..  ..+++.+.++.++|..+++.|.+.
T Consensus        78 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~i~~~~l~~~l~~~  156 (358)
T PF01266_consen   78 PVGFRPCGSLYLAEDEEDAESLERLLDRLRRNGI-PYELLSPEELRELFPFLNPRIEGGVFFPEGGVIDPRRLIQALAAE  156 (358)
T ss_dssp             SCEEEECEEEEEESSHHHHHHHHHHHHHHHHTTT-TEEEEEHHHHHHHSTTSSTTTEEEEEETTEEEEEHHHHHHHHHHH
T ss_pred             ccccccccccccccchhhhhhccccccccccccc-cccccchhhhhhhhcccccchhhhhcccccccccccchhhhhHHH
Confidence            64  588999999777 77788888888888998 8999999999999987765  678999999999999999999999


Q ss_pred             HHHcCcEEEeCceEEEEEEcCCeEE-EEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcCcccC
Q psy7710         214 FCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHL  292 (473)
Q Consensus       214 ~~~~Gv~i~~~~~V~~i~~~~~~v~-v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~~~  292 (473)
                      +++.|++|+++++|++|..++++|. |++.+| .++||.||+|+|.|+..|++.++.+.  ++.|.+++++.+++.....
T Consensus       157 ~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g-~i~ad~vV~a~G~~s~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~  233 (358)
T PF01266_consen  157 AQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDG-EIRADRVVLAAGAWSPQLLPLLGLDL--PLRPVRGQVLVLEPPESPL  233 (358)
T ss_dssp             HHHTT-EEEESEEEEEEEEETTEEEEEEETTE-EEEECEEEE--GGGHHHHHHTTTTSS--TEEEEEEEEEEEEGCCSGS
T ss_pred             HHHhhhhccccccccchhhccccccccccccc-ccccceeEecccccceeeeecccccc--cccccceEEEEEccCCccc
Confidence            9999999999999999999999988 999999 59999999999999999999998764  7999999999998654332


Q ss_pred             cccccccCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhhchHHHHhh
Q psy7710         293 VRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMS  372 (473)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (473)
                      . ..+...+....+...+|+.|+. |.+++|.+.. .     +.... +...                  ....+...+.
T Consensus       234 ~-~~~~~~~~~~~~~~~~~~~p~~-g~~~ig~~~~-~-----~~~~~-~~~~------------------~~~~~~~~~~  286 (358)
T PF01266_consen  234 A-PAILFPPVIFGPSDGVYIRPRP-GGVLIGTADG-N-----YDPGP-SPED------------------SSGEDPDVDE  286 (358)
T ss_dssp             S-SEEEEEEECESSCTEEEEEEET-TEEEEEESEC-E-----EEESS-SHHH------------------HSHHHHHHHH
T ss_pred             c-cccccccccccccccceecccc-cccccccccc-c-----ccccc-cccc------------------cccccccccH
Confidence            1 1111111112223468899987 8889994421 1     11000 1100                  0000111122


Q ss_pred             hcchhHHHHHhhcccCCCCCCcccCCCeeceEeeCCCCccc-------cccceeeeecCCccccchHHHHHHHHHHHHhh
Q psy7710         373 WFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLV-------DDFGVKAIHSPHTGIVDWGLVTRVMGEEFCEL  445 (473)
Q Consensus       373 ~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d~~p~-------~g~~~~~g~~~~~gi~~~~~~a~~~g~~~~~~  445 (473)
                      . .+.+++.+.+++|.|.+.++.+.|+|+||+  ++|+.|+       .|+|+++|++++ |+    .+|+.+|++++++
T Consensus       287 ~-~~~l~~~~~~~~p~l~~~~v~~~~~g~r~~--t~d~~p~ig~~~~~~~l~~~~g~~~~-G~----~~a~~~a~~~a~~  358 (358)
T PF01266_consen  287 E-IDELLERLARLLPGLGDAEVVRSWAGIRPF--TPDGRPIIGELPGSPNLYLAGGHGGH-GF----TLAPGLAELLADL  358 (358)
T ss_dssp             H-HHHHHHHHHHHSGGGGGSEEEEEEEEEEEE--ETTSECEEEEESSEEEEEEEECETTC-HH----HHHHHHHHHHHHH
T ss_pred             H-HHHhHHHHHHHHHHhhhccccccccceeee--ccCCCeeeeecCCCCCEEEEECCCch-HH----HHHHHHHHHHhcC
Confidence            2 457789999999999999999999999988  7999984       688999998775 45    5788888888764

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=100.00  E-value=6.6e-37  Score=298.65  Aligned_cols=327  Identities=19%  Similarity=0.248  Sum_probs=245.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHhcC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRN  137 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (473)
                      +||+|||||++|+++|++|+++  |.+|+|+|++ .++.++|+++.|++.+.... +. ....+...+.+.|.++.++.+
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~--G~~V~vle~~-~~~~gaS~~~~G~~~~~~~~-~~-~~~~l~~~~~~~~~~l~~~~~   75 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARR--GLSVTVIERS-SRAQGASVRNFGQVWPTGQA-PG-PAWDRARRSREIWLELAAKAG   75 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCC-CCCCCcccccCceEEecCCC-Cc-cHHHHHHHHHHHHHHHHHHcC
Confidence            5899999999999999999999  8999999998 67889999999998753221 11 234578888999999998888


Q ss_pred             CCCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcc--c-ceeEecCCccceeHHHHHHHHHHH
Q psy7710         138 IPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCK--G-VKAIHSPNTGIVDWGLVTRVMGEE  213 (473)
Q Consensus       138 ~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~--~-~~~~~~~~~~~~~~~~~~~~l~~~  213 (473)
                      +.+.+.|.+.+..++ +.+.+....+.....+. ..++++++++.+.+|.+.  . .++++.+.++++||..++..|.+.
T Consensus        76 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~p~l~~~~~~~~~~~~~~g~v~p~~~~~~l~~~  154 (365)
T TIGR03364        76 IWVRENGSLHLARTEEELAVLEEFAATREPAEY-RVELLTPAEVAAKFPALRLDGLRGGLHSPDELRVEPREAIPALAAY  154 (365)
T ss_pred             CCEEeCCEEEEeCCHHHHHHHHHHHHhhhhcCC-CeEEECHHHHHHhCCCCCccCceEEEEcCCCeeECHHHHHHHHHHH
Confidence            888889999998776 65666666665556676 689999999999999664  2 678999999999999999999999


Q ss_pred             HHHc-CcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcCcccC
Q psy7710         214 FCEL-GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHL  292 (473)
Q Consensus       214 ~~~~-Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~~~  292 (473)
                      +.++ |++++++++|.+|...    .|+|.+| .++||.||+|+|+|+..|++.++.+  .++.|+|||++.+++.....
T Consensus       155 ~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g-~i~a~~VV~A~G~~s~~l~~~~~~~--~~~~p~~~q~~~~~p~~~~~  227 (365)
T TIGR03364       155 LAEQHGVEFHWNTAVTSVETG----TVRTSRG-DVHADQVFVCPGADFETLFPELFAA--SGVRRCKLQMMRTAPQPRLP  227 (365)
T ss_pred             HHhcCCCEEEeCCeEEEEecC----eEEeCCC-cEEeCEEEECCCCChhhhCcchhhc--cCcceEEEEeeeccCCCCCc
Confidence            8875 9999999999999643    5778887 6899999999999998887665543  37899999999998754211


Q ss_pred             cccccc--------------------------cCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHh
Q psy7710         293 VRGNIY--------------------------PVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELF  346 (473)
Q Consensus       293 ~~~~~~--------------------------~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~  346 (473)
                      ......                          +.+........+|++|+.+|++++|++.+.....+.+     +..   
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~-----~~~---  299 (365)
T TIGR03364       228 LGTALLTGLSLRRYEGFAELPSAAALKARLQEEEPELLEWGIHLMVSQNPDGELIIGDSHEYGLAPDPF-----DDE---  299 (365)
T ss_pred             CCccccccceeeechhHhhCcchHHHHhhhcccCchhhhcCeEEEEEECCCCCEEecCcccccCCCCCc-----chH---
Confidence            111000                          0000001123579999999999999986532111110     000   


Q ss_pred             hhccCCcchhccchhhhhchHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEeeCCCCccc-----cccceeee
Q psy7710         347 STLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLV-----DDFGVKAI  421 (473)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d~~p~-----~g~~~~~g  421 (473)
                                        ..        .+.+.+.+.+++ .+.+.++.+.|+|+||+  |+|..|+     .|+|+++|
T Consensus       300 ------------------~~--------~~~l~~~~~~~~-~l~~~~~~~~w~G~r~~--t~d~~~v~~~~~~g~~~a~G  350 (365)
T TIGR03364       300 ------------------EI--------DNLILAEAKTIL-GLPDLDIVERWQGVYAS--SPPAPIFLERPDDGVTVVVV  350 (365)
T ss_pred             ------------------HH--------HHHHHHHHHHhc-CCCCCceEEEEeEEecC--CCCCCceecCCCCCeEEEEe
Confidence                              01        123345666665 78889999999999998  6887776     68999999


Q ss_pred             ecCCccccchHHHHHHHH
Q psy7710         422 HSPHTGIVDWGLVTRVMG  439 (473)
Q Consensus       422 ~~~~~gi~~~~~~a~~~g  439 (473)
                      |++| |+.    +||.+|
T Consensus       351 ~~g~-G~~----~ap~~~  363 (365)
T TIGR03364       351 TSGA-GMT----LSFGLA  363 (365)
T ss_pred             cCCC-ccc----cccccc
Confidence            9886 564    455444

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=100.00  E-value=1.7e-36  Score=301.43  Aligned_cols=381  Identities=22%  Similarity=0.301  Sum_probs=288.9

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC--CCcceEEeec---cCCC----chhHHHHH----
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG--HNSGVVHAGI---YYKP----GTLKAKLC----  122 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~--~~~g~~~~~~---~~~~----~~~~~~~~----  122 (473)
                      .++||+|||||++|+++||+|++..++.+|+|+||...++.++|+  +|+|..|.+.   +|.+    +.+....+    
T Consensus         4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS~~~~NaG~ghag~~e~~y~~~~~~g~~~~~~a~~~~   83 (494)
T PRK05257          4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESSNGWNNAGTGHSALCELNYTPEKADGSIDISKAVKIN   83 (494)
T ss_pred             ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcCCCcCccccccccchhhcCCCCCCCCchhHHHHHHHH
Confidence            568999999999999999999997678999999998667878777  7888888773   5555    34443333    


Q ss_pred             ---HHhHHHHHHHHHhcCC-----CC-cccCeEEEEeCc-ChhhHHHHHHHHHhCCC-Ccceee-CHHHHHhhcCCcc--
Q psy7710         123 ---VEGMNLAYEYFDKRNI-----PY-KKCGKLIVALNE-QLEPLHDLYERSIQNNV-KDVRLV-SAEEIKTIEPYCK--  188 (473)
Q Consensus       123 ---~~~~~~~~~~~~~~~~-----~~-~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~-~~~~~l-~~~~~~~~~p~~~--  188 (473)
                         ..+.++|..+.++ ++     .+ .++|.+.++.++ +.+.+...++.++++|+ ..++++ +.+++.+++|.+.  
T Consensus        84 ~~~~~s~~~~~~l~~~-g~~~~~~~~~~~~G~l~la~~e~e~~~l~~~~~~~~~~g~~~~~~~~~d~~el~e~eP~l~~~  162 (494)
T PRK05257         84 EQFQISRQFWAYLVEK-GVLPDPRSFINPVPHMSFVWGEDNVAFLKKRYEALKANPLFAGMEFSEDPAQIKEWAPLMMEG  162 (494)
T ss_pred             HHHHHHHHHHHHHHHc-CCCCCcccccccCCeEEEEECHHHHHHHHHHHHHHHhCCCCCCCEEeCCHHHHHHhCcccccC
Confidence               3444555554443 33     13 588999999888 88889999988888885 246674 8999999999873  


Q ss_pred             -----cceeEecCCccceeHHHHHHHHHHHHHHcC-cEEEeCceEEEEEEcCC-eEEEEc---CCCc--EEEcCEEEEcC
Q psy7710         189 -----GVKAIHSPNTGIVDWGLVTRVMGEEFCELG-GEIRLNQQVESFKENPE-SVTIST---KQGD--HLESSYALVCA  256 (473)
Q Consensus       189 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~-~v~v~~---~~g~--~i~ad~VV~aa  256 (473)
                           ..+++|+|.++.+|+..+++.|.+.+++.| ++|+++++|++|..+++ .|.|.+   .+|.  +++|++||+|+
T Consensus       163 r~~~~~~~Al~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaA  242 (494)
T PRK05257        163 RDPSQKVAATRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGA  242 (494)
T ss_pred             CCCCcceeEEEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECC
Confidence                 378999999999999999999999999987 89999999999997554 366553   3352  68999999999


Q ss_pred             CcChHHHHHhcCCCC--CCceeeeeeEEEEeCcCcccCcccc--cccCCCCCCCccEE-EE-ecCCCCe--EEECCCccc
Q psy7710         257 GLQADEMALKSGCSL--EPAIVPFRGEYLLLNPAKQHLVRGN--IYPVPDPNFPFLGV-HF-TPRMDGS--VWLGPNAVL  328 (473)
Q Consensus       257 G~~s~~l~~~~g~~~--~~~~~p~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~-~p~~~g~--~~iG~~~~~  328 (473)
                      |+|+..+++++|+..  +.++.|++||++.++++.. ..++.  +|+.+++..|..++ ++ .+..+|.  +.+|+++.+
T Consensus       243 Gg~s~~L~~~~Gi~~~~~~~i~PvrGq~l~~~~~~~-v~~~~~kvY~~~~~~~P~~~vPh~dtr~i~G~~~~~~GP~A~~  321 (494)
T PRK05257        243 GGGALPLLQKSGIPEAKGYGGFPVSGQFLVCENPEV-VAQHHAKVYGKASVGAPPMSVPHLDTRVIDGKRSLLFGPFAGF  321 (494)
T ss_pred             CcchHHHHHHcCCCccCCCCeeeeeEEEEEcCCHHH-HhcCCeEEecCCCCCCCCCCCCCCCCcEECCceeEEECCCccc
Confidence            999999999999873  4578999999999986532 11233  88888866664333 33 2223564  889999886


Q ss_pred             cccccCcccccchhHHHhhhccCCcchhcc---chhh---hhchHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeec
Q psy7710         329 AFKKEGYRWRDFSVRELFSTLRYPGFWRLG---LKYT---RYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVR  402 (473)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~r  402 (473)
                      .+..    ..+.+..|+++.+.+.+++.++   .+|+   ++.+.+++..  ....++.+++++|.++..++....+|+|
T Consensus       322 ~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~d~~~~~aG~R  395 (494)
T PRK05257        322 STKF----LKNGSLLDLFSSVRPSNLLPMLAVGLDNFDLTKYLISQVMLS--DEDRFEALREFYPNAKPEDWELIVAGQR  395 (494)
T ss_pred             cHHh----ccCCCHHHHHHhcCccccHHHHHHHhhhhHHHHHHHHHHhhC--HHHHHHHHHHhCCCCCHHHceEcCCceE
Confidence            6433    3456788899999999999999   8885   8888887754  5577899999999999999999999999


Q ss_pred             eEeeCCC----Ccccccc-ceeeeecCCccccch--H--HHHHHHHHHHHhh
Q psy7710         403 AQALSSS----GDLVDDF-GVKAIHSPHTGIVDW--G--LVTRVMGEEFCEL  445 (473)
Q Consensus       403 p~~~t~d----~~p~~g~-~~~~g~~~~~gi~~~--~--~~a~~~g~~~~~~  445 (473)
                      ++..++|    |..+.|+ .+..+. +.-.++++  |  ..+..++..+.+.
T Consensus       396 ~Q~i~~~~~~~g~L~~~~~~i~~~~-~~~~~l~~~SPgat~s~~i~~~v~~~  446 (494)
T PRK05257        396 VQIIKKDPKKGGVLQFGTEVVSSAD-GSIAALLGASPGASTAVPIMLEVLEK  446 (494)
T ss_pred             eEEEccCCCCCCEEECCcEEEecCC-CeEEEEcCCCchHHHHHHHHHHHHHH
Confidence            9999888    8888886 554331 11112222  2  4455667766654

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=100.00  E-value=8.7e-37  Score=302.26  Aligned_cols=340  Identities=17%  Similarity=0.204  Sum_probs=249.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccC---CC--------------------
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYY---KP--------------------  114 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~---~~--------------------  114 (473)
                      +||+|||||++|+++|++|+++  |.+|+|+||++.++.++|++|+|++.+....   .+                    
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~--g~~V~vle~~~~~~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQR--GYQVTVFDRHRYAAMETSFANGGQLSASNAEVWNHWATVLKGLKWMLRKDAPLLLN   79 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCCCCcCcccccCCEEeecccccccChHHHHhhhHHhcCCCCCeEec
Confidence            5899999999999999999999  9999999999658999999999999764211   00                    


Q ss_pred             -c-----------------------hhHHHHHHHhHHHHHHHHHhcCCC--CcccCeEEEEeCc-ChhhHHHHHHHHHhC
Q psy7710         115 -G-----------------------TLKAKLCVEGMNLAYEYFDKRNIP--YKKCGKLIVALNE-QLEPLHDLYERSIQN  167 (473)
Q Consensus       115 -~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~l~~~~~~-~~~~~~~~~~~~~~~  167 (473)
                       .                       ....+++..+.+.|.++.++.+++  +.++|.+.++.++ +.+.+.+..+.++..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~  159 (410)
T PRK12409         80 PKPSWHKYSWLAEFLAHIPNYRANTIETVRLAIAARKHLFDIAEREGIDFDLERRGILHIYHDKAGFDHAKRVNALLAEG  159 (410)
T ss_pred             CCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcceeecCcEEEEECCHHHHHhccHHHHHHHhc
Confidence             0                       001345667778888888887764  5789999999877 777777788888888


Q ss_pred             CCCcceeeCHHHHHhhcCCccc--ceeEecCCccceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCC-
Q psy7710         168 NVKDVRLVSAEEIKTIEPYCKG--VKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQG-  244 (473)
Q Consensus       168 g~~~~~~l~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g-  244 (473)
                      ++ ..++++++++.+++|.+..  .++++.+.++.+++..++..|.+.+++.|++++++++|+++..+++.+.+.+.++ 
T Consensus       160 g~-~~~~l~~~e~~~~~P~l~~~~~ga~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~  238 (410)
T PRK12409        160 GL-ERRAVTPEEMRAIEPTLTGEYYGGYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSA  238 (410)
T ss_pred             CC-CeEEcCHHHHHHhCCCCccccceEEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCC
Confidence            88 7899999999999998754  6789999999999999999999999999999999999999998777776544322 


Q ss_pred             ----cEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcCcccCcccccccCCCCCCCccEEEEecCCCCeE
Q psy7710         245 ----DHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSV  320 (473)
Q Consensus       245 ----~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~  320 (473)
                          .+++||.||+|+|+|+..+.++++..  .++.|++||++.+........  ...|..........++..+...+++
T Consensus       239 ~~~~~~i~a~~vV~a~G~~s~~l~~~~~~~--~~i~p~~g~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~  314 (410)
T PRK12409        239 EHPSRTLEFDGVVVCAGVGSRALAAMLGDR--VNVYPVKGYSITVNLDDEASR--AAAPWVSLLDDSAKIVTSRLGADRF  314 (410)
T ss_pred             CCccceEecCEEEECCCcChHHHHHHhCCC--CccccCCceEEEeecCCcccc--ccCCceeeeecCCcEEEEecCCCcE
Confidence                37899999999999999999888764  478999999987753321110  0011000000001122222235678


Q ss_pred             EECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhhchHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCe
Q psy7710         321 WLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSG  400 (473)
Q Consensus       321 ~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G  400 (473)
                      ++|++.++.    +++. +.++                              ...+.+++.+.++||.|.+..+. .|+|
T Consensus       315 ~igg~~~~~----~~~~-~~~~------------------------------~~~~~l~~~~~~~~P~l~~~~~~-~w~G  358 (410)
T PRK12409        315 RVAGTAEFN----GYNR-DIRA------------------------------DRIRPLVDWVRRNFPDVSTRRVV-PWAG  358 (410)
T ss_pred             EEEEEEEec----CCCC-CCCH------------------------------HHHHHHHHHHHHhCCCCCccccc-eecc
Confidence            888875431    1110 1010                              01345568999999999988776 7999


Q ss_pred             eceEeeCCCCccc------cccceeeeecCCccccchHHHHHHHHHHHH
Q psy7710         401 VRAQALSSSGDLV------DDFGVKAIHSPHTGIVDWGLVTRVMGEEFC  443 (473)
Q Consensus       401 ~rp~~~t~d~~p~------~g~~~~~g~~~~~gi~~~~~~a~~~g~~~~  443 (473)
                      +||+  |+|+.|+      .|+|+++||+ |.|+..++.+|..++++|.
T Consensus       359 ~r~~--t~D~~PiiG~~~~~~l~~~~G~~-~~G~~~ap~~g~~lA~~i~  404 (410)
T PRK12409        359 LRPM--MPNMMPRVGRGRRPGVFYNTGHG-HLGWTLSAATADLVAQVVA  404 (410)
T ss_pred             cCCC--CCCCCCeeCCCCCCCEEEecCCc-ccchhhcccHHHHHHHHHc
Confidence            9987  8999986      5789999975 4577655555555555554

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=100.00  E-value=3.7e-36  Score=294.86  Aligned_cols=357  Identities=17%  Similarity=0.159  Sum_probs=257.4

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc--CcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG--MHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYF  133 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g--~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (473)
                      .++||+|||||++|+++|++|+++  |.+|+|||++ .++  .+++..+.++++..+..  .....++...+.+.|.++.
T Consensus         2 ~~~dv~IIGgGi~G~s~A~~L~~~--g~~V~lie~~-~~~~~~~ss~~~~~~~~~~~~~--~~~~~~l~~~s~~~~~~l~   76 (376)
T PRK11259          2 MRYDVIVIGLGSMGSAAGYYLARR--GLRVLGLDRF-MPPHQQGSSHGDTRIIRHAYGE--GPAYVPLVLRAQELWRELE   76 (376)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHC--CCeEEEEecc-cCCCCCcCcCCcceEEEeeccC--CchhhHHHHHHHHHHHHHH
Confidence            358999999999999999999999  9999999998 444  24455555666543321  1234568888999999998


Q ss_pred             HhcCCC-CcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCccc---ceeEecCCccceeHHHHHHH
Q psy7710         134 DKRNIP-YKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG---VKAIHSPNTGIVDWGLVTRV  209 (473)
Q Consensus       134 ~~~~~~-~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~  209 (473)
                      ++.+.+ +.++|.+.+..++ .+.+....+.+++.|+ +.++++.+++.+++|.+..   ..+++.+.+++++|..++..
T Consensus        77 ~~~~~~~~~~~G~l~~~~~~-~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~P~l~~~~~~~a~~~~~~g~v~p~~~~~~  154 (376)
T PRK11259         77 RESGEPLFVRTGVLNLGPAD-SDFLANSIRSARQHGL-PHEVLDAAEIRRRFPQFRLPDGYIALFEPDGGFLRPELAIKA  154 (376)
T ss_pred             HHhCCccEEEECCEEEcCCC-CHHHHHHHHHHHHcCC-CcEEECHHHHHHhCCCCcCCCCceEEEcCCCCEEcHHHHHHH
Confidence            887765 5678888886443 3345566677778888 7899999999999997752   57889999999999999999


Q ss_pred             HHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcCc
Q psy7710         210 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAK  289 (473)
Q Consensus       210 l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~~  289 (473)
                      +.+.+.+.|++++++++|+++..+++.+.|++++| .++||.||+|+|.|+..++..+    ..++.|.+++++.+++..
T Consensus       155 ~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~~l~~~~----~~~i~~~~~~~~~~~~~~  229 (376)
T PRK11259        155 HLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVKDLLPPL----ELPLTPVRQVLAWFQADG  229 (376)
T ss_pred             HHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchhhhcccc----cCCceEEEEEEEEEecCC
Confidence            99999999999999999999998888888999888 8999999999999998887753    247899999999987643


Q ss_pred             ccCcccccccCCCC-CCCccEEEEecCCCCe-EEECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhhchH
Q psy7710         290 QHLVRGNIYPVPDP-NFPFLGVHFTPRMDGS-VWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSK  367 (473)
Q Consensus       290 ~~~~~~~~~~~~~~-~~~~~~~~~~p~~~g~-~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (473)
                      ..... ..++.... ......+|++|+.+++ +++|++..... ..       ++.+. +..  .            ...
T Consensus       230 ~~~~~-~~~p~~~~~~~~~~~~y~~p~~~~~~l~ig~~~~~~~-~~-------~~~~~-~~~--~------------~~~  285 (376)
T PRK11259        230 RYSEP-NRFPAFIWEVPDGDQYYGFPAENGPGLKIGKHNGGQE-IT-------SPDER-DRF--V------------TVA  285 (376)
T ss_pred             ccCCc-cCCCEEEEecCCCceeEeccCCCCCceEEEECCCCCC-CC-------Chhhc-cCC--C------------CcH
Confidence            21000 00010000 0011247889998888 99998743110 00       00000 000  0            000


Q ss_pred             HHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEeeCCCCccc-------cccceeeeecCCccccchHHHHHHHHH
Q psy7710         368 EMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLV-------DDFGVKAIHSPHTGIVDWGLVTRVMGE  440 (473)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d~~p~-------~g~~~~~g~~~~~gi~~~~~~a~~~g~  440 (473)
                           ...+.+++.+.++||.+.+  +.+.|+|+||+  |||+.|+       .|+|+++||++| |+..++.+|..+++
T Consensus       286 -----~~~~~l~~~~~~~~P~~~~--~~~~~~g~~~~--t~D~~P~ig~~~~~~gl~~~~G~~g~-G~~~ap~~g~~la~  355 (376)
T PRK11259        286 -----EDGAELRPFLRNYLPGVGP--CLRGAACTYTN--TPDEHFIIDTLPGHPNVLVASGCSGH-GFKFASVLGEILAD  355 (376)
T ss_pred             -----HHHHHHHHHHHHHCCCCCc--cccceEEeccc--CCCCCceeecCCCCCCEEEEecccch-hhhccHHHHHHHHH
Confidence                 1134556889999998876  88999999987  8999987       489999999876 57665566666666


Q ss_pred             HHHhhCCeEec-ccceeec
Q psy7710         441 EFCELGGEIRL-NQQVESF  458 (473)
Q Consensus       441 ~~~~~~~~~~~-~~~~~~~  458 (473)
                      +|.....+.++ ++..+||
T Consensus       356 li~~~~~~~~~~~~~~~Rf  374 (376)
T PRK11259        356 LAQDGTSDFDLSPFSLSRF  374 (376)
T ss_pred             HHhcCCCCCCcCccCcccc
Confidence            66554443332 3666666

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=100.00  E-value=5.9e-36  Score=297.58  Aligned_cols=344  Identities=23%  Similarity=0.312  Sum_probs=265.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC--CCcceEEeec---cCCCchh-------HHHHHHHh
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG--HNSGVVHAGI---YYKPGTL-------KAKLCVEG  125 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~--~~~g~~~~~~---~~~~~~~-------~~~~~~~~  125 (473)
                      +||+|||||++|+++|++|++..||.+|+|+||...++.++|+  +|+|..|.+.   +|.+...       +...+...
T Consensus         1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~S~~~~naG~~hag~~e~~y~~~~~~~~~~l~~a~~~~~~   80 (483)
T TIGR01320         1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAESSNPWNNAGTGHSALCELNYTPEMADGSIDIAKAVGINEQ   80 (483)
T ss_pred             CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhhCCCCCcccccccchhhccCCCccCCCchhHHHHHHHHHH
Confidence            5899999999999999999998779999999998678988888  6888888877   5666422       22233333


Q ss_pred             ----HHHHHHHHHhcCC-----CC-cccCeEEEEeCc-ChhhHHHHHHHHHhCCCC-ccee-eCHHHHHhhcCCcc----
Q psy7710         126 ----MNLAYEYFDKRNI-----PY-KKCGKLIVALNE-QLEPLHDLYERSIQNNVK-DVRL-VSAEEIKTIEPYCK----  188 (473)
Q Consensus       126 ----~~~~~~~~~~~~~-----~~-~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~-~~~~-l~~~~~~~~~p~~~----  188 (473)
                          .++|..+.++ ++     +| .++|.+.++.++ +.+.+++.++.+++.++. .+++ ++++++.+++|.+.    
T Consensus        81 ~~~s~~~~~~l~~~-g~~~~~~~~~~~~G~L~va~~e~e~~~L~~~~~~~~~~g~~~~~~~~l~~~el~~~eP~l~~~r~  159 (483)
T TIGR01320        81 FQVSRQFWAHLVEE-GILTDPKSFINPVPHVSFVHGSDGVAYLKKRYEALKGHPLFEGMEFSEDPATFAEWLPLMAAGRD  159 (483)
T ss_pred             HHHHHHHHHHHHHc-CCCCChhhhccCCCeEEEEEChHHHHHHHHHHHHHhcCCCccCceEeCCHHHHHHhCCCcccCCC
Confidence                4444444443 32     23 359999999888 899999999998888763 3565 79999999999875    


Q ss_pred             ---cceeEecCCccceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcC-CeEEEEc---CCC--cEEEcCEEEEcCCcC
Q psy7710         189 ---GVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENP-ESVTIST---KQG--DHLESSYALVCAGLQ  259 (473)
Q Consensus       189 ---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~v~v~~---~~g--~~i~ad~VV~aaG~~  259 (473)
                         ..+++|.|.++.+||..++..|.+.++++|++|+++++|++|..++ +.|.+++   .+|  .+++||+||+|+|+|
T Consensus       160 ~~~~~gAl~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~  239 (483)
T TIGR01320       160 FSEPVAANWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGG  239 (483)
T ss_pred             CCCceEEEEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcc
Confidence               3689999999999999999999999999999999999999998854 4566543   333  368999999999999


Q ss_pred             hHHHHHhcCCCC--CCceeeeeeEEEEeCcC-cccCcccccccCCCCCCCccEE-EE-ecCCCCeEE--ECCCcc--ccc
Q psy7710         260 ADEMALKSGCSL--EPAIVPFRGEYLLLNPA-KQHLVRGNIYPVPDPNFPFLGV-HF-TPRMDGSVW--LGPNAV--LAF  330 (473)
Q Consensus       260 s~~l~~~~g~~~--~~~~~p~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~-~p~~~g~~~--iG~~~~--~~~  330 (473)
                      +..|++++|+..  ..++.|++||++.++.+ .....+..+|+.+++..|+.++ ++ .+..+|...  +|+++.  +.+
T Consensus       240 s~~La~~~Gi~~~~~~~i~P~~Gq~l~l~~~~~~~~~~~~IY~v~~p~~p~~~Vph~Dtr~i~G~~~~~~GP~A~~~~~~  319 (483)
T TIGR01320       240 ALPLLQKSGIPEVKGFAGFPVSGLFLRCGNPELTEQHRAKVYGQASVGAPPMSVPHLDTRVVDGKKWLLFGPYAGWSPKF  319 (483)
T ss_pred             hHHHHHHcCCCcCCCCceeeeeEEEEEeCCHHHHhhcCeEEEecCCCCCCCcEEecCCCccccCCEEEEECcCCCcchHh
Confidence            999999999873  56889999999999765 2334456689999887775555 55 333456554  999998  556


Q ss_pred             cccCcccccchhHHHhhhccCCcchhc---cchh---hhhchHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceE
Q psy7710         331 KKEGYRWRDFSVRELFSTLRYPGFWRL---GLKY---TRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQ  404 (473)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~  404 (473)
                      .++++      ..|++..+...+++++   ..+|   +.+.+.++.....  ..++.+++++|.+...++....+|+|++
T Consensus       320 ~reg~------~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~--~~~~~~~~~~p~~~~~d~~~~~~GiR~Q  391 (483)
T TIGR01320       320 LKHGS------ILDLPLSIRPDNLLSMLGVGLTEMDLTKYLIGQLRKSEE--ERVSALREFYPEAIDSDWELIVAGQRVQ  391 (483)
T ss_pred             hcCCc------hhHHhhcCCHhhHHHHHHHHHhhhHHHHHHHHHHHHhHH--HHHHHHHHhCCCCCHHHcEEccCceEEE
Confidence            66653      2344455666667666   4555   5666666654332  4478999999999999999999999999


Q ss_pred             eeCCCC
Q psy7710         405 ALSSSG  410 (473)
Q Consensus       405 ~~t~d~  410 (473)
                      ..++|+
T Consensus       392 ~i~~~~  397 (483)
T TIGR01320       392 VIKKDP  397 (483)
T ss_pred             EEecCC
Confidence            998883

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=100.00  E-value=1.6e-35  Score=290.78  Aligned_cols=360  Identities=16%  Similarity=0.161  Sum_probs=256.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccC-cccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHhc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGM-HQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKR  136 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~-~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (473)
                      +||+|||||++|+++|++|+++  |.+|+|+|+....++ +++..+.+.+....   .......+...+.+.|.++.++.
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~~--g~~V~l~e~~~~~~~~~ss~~~~~~~~~~~---~~~~~~~l~~~s~~~~~~l~~~~   75 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKH--GKKTLLLEQFDLPHSRGSSHGQSRIIRKAY---PEDFYTPMMLECYQLWAQLEKEA   75 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCCCCCCCCCCCCCeeeeecc---CchhHhHHHHHHHHHHHHHHHHh
Confidence            5899999999999999999999  899999999743322 34444555554431   22345678888999999998877


Q ss_pred             CCC-CcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcc---cceeEecCCccceeHHHHHHHHHH
Q psy7710         137 NIP-YKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCK---GVKAIHSPNTGIVDWGLVTRVMGE  212 (473)
Q Consensus       137 ~~~-~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~~~~l~~  212 (473)
                      +++ +.++|.+.+...++ +.+.+..+.+.+.|+ +.++++++++.+.+|.+.   ...+++.+.++.++|..+++.|.+
T Consensus        76 ~~~~~~~~G~l~~~~~~~-~~~~~~~~~~~~~g~-~~~~l~~~e~~~~~P~l~~~~~~~~~~~~~~g~i~p~~~~~~l~~  153 (380)
T TIGR01377        76 GTKLHRQTGLLLLGPKEN-QFLKTIQATLSRHGL-EHELLSSKQLKQRFPNIRVPRNEVGLLDPNGGVLYAEKALRALQE  153 (380)
T ss_pred             CCeeEeecCeEEEcCCCc-HHHHHHHHHHHHcCC-CeEEcCHHHHHHhCCCCcCCCCceEEEcCCCcEEcHHHHHHHHHH
Confidence            765 46778888765444 566667777778888 789999999999999765   256899999999999999999999


Q ss_pred             HHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcCcccC
Q psy7710         213 EFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHL  292 (473)
Q Consensus       213 ~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~~~  292 (473)
                      .+++.|++++.+++|+++..+++.+.|++.++ +++||.||+|+|.|+..+++++|+..  ++.|.++|++.+.......
T Consensus       154 ~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~g~~~--~~~~~~~~~~~~~~~~~~~  230 (380)
T TIGR01377       154 LAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPLGIEI--PLQPLRINVCYWREKEPGS  230 (380)
T ss_pred             HHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhcccCC--CceEEEEEEEEEecCCccc
Confidence            99999999999999999998888888888877 89999999999999889999888754  7899999987765432211


Q ss_pred             cc-cccccCCCCCCCccEEEEecCCCC-eEEECCCcc-ccccccCcccccchhHHHhhhccCCcchhccchhhhhchHHH
Q psy7710         293 VR-GNIYPVPDPNFPFLGVHFTPRMDG-SVWLGPNAV-LAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEM  369 (473)
Q Consensus       293 ~~-~~~~~~~~~~~~~~~~~~~p~~~g-~~~iG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (473)
                      .. ...+|......+...+|++|..++ .+++|+... ...+++..+... .+                   ..      
T Consensus       231 ~~~~~~~p~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------------------~~------  284 (380)
T TIGR01377       231 YGVSQAFPCFLVLGLNPHIYGLPSFEYPGLMKVYYHHGQQIDPDERDCPF-GA-------------------DI------  284 (380)
T ss_pred             cCccCCCCEEEEeCCCCceEecCCCCCCceEEEEeCCCCccCcccccCCC-CC-------------------CH------
Confidence            00 000111000000124788888542 355554321 100000000000 00                   00      


Q ss_pred             HhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEeeCCCCccc-------cccceeeeecCCccccchHHHHHHHHHHH
Q psy7710         370 IMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLV-------DDFGVKAIHSPHTGIVDWGLVTRVMGEEF  442 (473)
Q Consensus       370 ~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d~~p~-------~g~~~~~g~~~~~gi~~~~~~a~~~g~~~  442 (473)
                         ...+.+.+.+.+++|.+.... .+.|+|+||+  |||+.|+       .|+|+++||++| |+..++.+|..++++|
T Consensus       285 ---~~~~~l~~~~~~~~P~l~~~~-~~~~~~~~~~--t~D~~piIg~~p~~~~l~va~G~~g~-G~~~~p~~g~~la~li  357 (380)
T TIGR01377       285 ---EDVQILRKFVRDHLPGLNGEP-KKGEVCMYTN--TPDEHFVIDLHPKYDNVVIGAGFSGH-GFKLAPVVGKILAELA  357 (380)
T ss_pred             ---HHHHHHHHHHHHHCCCCCCCc-ceeeEEEecc--CCCCCeeeecCCCCCCEEEEecCCcc-ceeccHHHHHHHHHHH
Confidence               113455689999999998644 5789999976  8999986       578999999876 5766667777777777


Q ss_pred             HhhCCeEecc-cceeeccc
Q psy7710         443 CELGGEIRLN-QQVESFKE  460 (473)
Q Consensus       443 ~~~~~~~~~~-~~~~~~~~  460 (473)
                      .......++. ++.+||..
T Consensus       358 ~~~~~~~~~~~f~~~Rf~~  376 (380)
T TIGR01377       358 MKLKPSYDLAIFSLNRFAL  376 (380)
T ss_pred             hcCCCCCCccccChhhccc
Confidence            6665555554 77888864

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=100.00  E-value=1.6e-34  Score=284.83  Aligned_cols=354  Identities=21%  Similarity=0.282  Sum_probs=274.8

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC--CCcceEEeec---cCCCch----h---HHHHH-
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG--HNSGVVHAGI---YYKPGT----L---KAKLC-  122 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~--~~~g~~~~~~---~~~~~~----~---~~~~~-  122 (473)
                      ..+||+|||||++|+++|+.|++..|+.+|+|+||.+.++..+|+  +|+|..|.+.   .|.+..    .   ++.-. 
T Consensus         5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS~~~nNagt~hag~~e~nY~~~~~~g~~~~~ka~~i~   84 (497)
T PRK13339          5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESSNEWNNAGTGHAALCELNYTVQQPDGSIDIEKAKEIN   84 (497)
T ss_pred             ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcCCCccccCcceeeehhhccCCcccCCcccHHHHHHHH
Confidence            567999999999999999999999889999999994489999985  5888887775   444422    1   12222 


Q ss_pred             ---HHhHHHHHHHHHh--cC--CC-CcccCeEEEEeCc-ChhhHHHHHHHHHhCCC-Ccceee-CHHHHHhhcCCcc---
Q psy7710         123 ---VEGMNLAYEYFDK--RN--IP-YKKCGKLIVALNE-QLEPLHDLYERSIQNNV-KDVRLV-SAEEIKTIEPYCK---  188 (473)
Q Consensus       123 ---~~~~~~~~~~~~~--~~--~~-~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~-~~~~~l-~~~~~~~~~p~~~---  188 (473)
                         ..+.++|..+.+.  ++  -+ +.+.+++.+...+ +.+.++..++.++..++ +.++++ +++++.+++|.+.   
T Consensus        85 ~~~~~s~~f~~~~~~~~~~~~~~~~i~~~~~m~~~~~~~~~~~L~~r~~~~~~~~~f~~~~~~~d~~el~~~~P~l~~~r  164 (497)
T PRK13339         85 EQFEISKQFWGHLVKSGTIGNPREFINPLPHISFVRGKNNVKFLKKRYEALKQHPMFDNIEYTEDIEVMAKWMPLMMPGR  164 (497)
T ss_pred             HHHHHHHHHHHhhhhhcCCCChHhhcccCCeEEEEEChHHHHHHHHHHHHhhccCCCCCcEEecCHHHHHHhCCcccCCC
Confidence               3344455444442  11  12 5678999999777 88899999998888764 567999 7999999999875   


Q ss_pred             ----cceeEecCCccceeHHHHHHHHHHHHHH-cCcEEEeCceEEEEEEc-CCeEEEE---cCCCc--EEEcCEEEEcCC
Q psy7710         189 ----GVKAIHSPNTGIVDWGLVTRVMGEEFCE-LGGEIRLNQQVESFKEN-PESVTIS---TKQGD--HLESSYALVCAG  257 (473)
Q Consensus       189 ----~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~-~~~v~v~---~~~g~--~i~ad~VV~aaG  257 (473)
                          ..+++|.|.++.+|+..+++.|.+.+.+ .|++++++++|++|..+ ++.|.++   +.++.  +++||+||+|+|
T Consensus       165 ~~~~~~~Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAG  244 (497)
T PRK13339        165 EANEIMAASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAG  244 (497)
T ss_pred             CCCcceeEEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCC
Confidence                2789999999999999999999999965 59999999999999877 6677765   44452  689999999999


Q ss_pred             cChHHHHHhcCCCC--CCceeeeeeEEEEeCcCcccCcc---cccccCCCCCCCccEE-EE-ecCCCCe--EEECCCccc
Q psy7710         258 LQADEMALKSGCSL--EPAIVPFRGEYLLLNPAKQHLVR---GNIYPVPDPNFPFLGV-HF-TPRMDGS--VWLGPNAVL  328 (473)
Q Consensus       258 ~~s~~l~~~~g~~~--~~~~~p~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~-~p~~~g~--~~iG~~~~~  328 (473)
                      +|+..|++++|+..  ..++.|++||++.++++.  .+.   ..+|+.+++..|..++ ++ .+..+|.  +.+|+++.+
T Consensus       245 awS~~La~~~Gi~~~~~~~i~PvkGq~l~l~~~~--~v~~h~~~VY~v~~~~~P~~~VPhlDtr~i~G~~~v~~GP~A~~  322 (497)
T PRK13339        245 GGAIPLLQKSGIPESKHLGGFPISGQFLRCTNPE--VVKQHQAKVYSKEPVGTPPMTVPHLDTRYIDGKRSLLFGPYAGF  322 (497)
T ss_pred             cchHHHHHHcCCCccCCCceEeeeEEEEEecCHH--HhhhcCceEeCCCCCCCCCCcCCCCCCcEEcCceeEEECCCccc
Confidence            99999999999874  268999999999998632  222   3589998877664343 33 3334664  789999886


Q ss_pred             c--ccccCcccccchhHHHhhhccCCcc---hhccchhh---hhchHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCe
Q psy7710         329 A--FKKEGYRWRDFSVRELFSTLRYPGF---WRLGLKYT---RYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSG  400 (473)
Q Consensus       329 ~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G  400 (473)
                      .  +.+      ..+..|+++.+.+.++   +....+|.   ++.+.+++..  ....++.+++++|.+...++....+|
T Consensus       323 ~~~~~r------~~~~~d~~~~l~~~~~~~~~~~~~~~~~l~~~~~~e~~~~--k~~~~~~~~~~~P~~~~~D~~~~~aG  394 (497)
T PRK13339        323 GPKFLK------HGSNLDLFKSVKPYNITTMLAVAVKNMPLIKYSIDQVMQT--KEGRMNHLRTFYPEARAEDWRLYTAG  394 (497)
T ss_pred             hHHHhc------cCCHHHHHHHhCccCcHHHHHHHHhccHHHHHHHHHHhhC--HHHHHHHHHHhCCCCCHHHeeEcCCc
Confidence            5  322      3467778888888666   66667775   7778877754  45678999999999999999999999


Q ss_pred             eceEeeCCCCcccccccee
Q psy7710         401 VRAQALSSSGDLVDDFGVK  419 (473)
Q Consensus       401 ~rp~~~t~d~~p~~g~~~~  419 (473)
                      +|++..++|+..++||.+-
T Consensus       395 iR~Q~i~~~~~~~~dfl~~  413 (497)
T PRK13339        395 KRVQVIKDTPEHGKGFIQF  413 (497)
T ss_pred             eEEEEEeCCCCccCCEEEe
Confidence            9999999999888888443

>KOG2844|consensus

Probab=100.00  E-value=3.3e-35  Score=281.83  Aligned_cols=366  Identities=19%  Similarity=0.207  Sum_probs=287.5

Q ss_pred             CCCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHH
Q psy7710          54 SPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYF  133 (473)
Q Consensus        54 ~~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (473)
                      .+...||+|||+|..|+++||+|++.  |.++.++........+++..+.|.+...+. . +.....+...+...+.++.
T Consensus        36 ~~~~A~vvViggG~~g~~~~yhlak~--g~k~avlle~~~ltsgttwhtagl~~~lr~-~-dv~~qlia~~~~~l~~~le  111 (856)
T KOG2844|consen   36 LPSTADVVVIGGGSLGCSTAYHLAKR--GMKGAVLLERSRLTSGTTWHTAGLLWQLFP-S-DVELQLIAHTSRVLYRELE  111 (856)
T ss_pred             CCCcccEEEEcCCchhHHHHHHHHHc--cccceEEEeeeeeccccccccccceeeccC-C-chhHHHHHHHHHHHHHHHH
Confidence            34568999999999999999999999  888555444447888999999999887432 2 2222345556667777888


Q ss_pred             HhcCCC--CcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCccc---ceeEecCCccceeHHHHH
Q psy7710         134 DKRNIP--YKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG---VKAIHSPNTGIVDWGLVT  207 (473)
Q Consensus       134 ~~~~~~--~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~  207 (473)
                      ++.+..  |.++|.+.++.+. ....++.+......+|. ..+++++++..+++|.++.   .+++|.|.+|.+||..++
T Consensus       112 eEtgl~tGwiq~G~~~lAs~~~R~de~kR~~S~g~a~g~-e~~lLsPee~~~~~pLLn~d~v~g~Ly~P~DG~~DP~~lC  190 (856)
T KOG2844|consen  112 EETGLHTGWIQNGGIFLASNRQRLDEYKRLMSRGKAHGV-ESELLSPEETQELFPLLNVDDVYGGLYSPGDGVMDPAGLC  190 (856)
T ss_pred             HhcCCCcceecCCceEEecCHHHHHHHHHHHHhhhhccc-eeeecCHHHHHHhCcccchhHheeeeecCCCcccCHHHHH
Confidence            888865  9999999999999 88888888888888998 8999999999999999875   789999999999999999


Q ss_pred             HHHHHHHHHcCcEEEeCceEEEEEEcC-CeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeC
Q psy7710         208 RVMGEEFCELGGEIRLNQQVESFKENP-ESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLN  286 (473)
Q Consensus       208 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~  286 (473)
                      .+|+..+++.|+.|+.+|+|++|.... +.+.|+|..| .++|.+||+|||.|+..+..+.|++.  |++|+..++++++
T Consensus       191 ~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWAr~Vg~m~gvkv--PL~p~~H~YvvT~  267 (856)
T KOG2844|consen  191 QALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWAREVGAMAGVKV--PLVPMHHAYVVTS  267 (856)
T ss_pred             HHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHHHHhhhhcCCcc--cceeeeeeEEEec
Confidence            999999999999999999999998655 4457999999 89999999999999999999999775  8999999999998


Q ss_pred             cCcccCcccccccCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhhch
Q psy7710         287 PAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGS  366 (473)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (473)
                      +.+.....    +.|..+.-...+|++.+.++ +..|+........++...                       .+....
T Consensus       268 ~IeGi~s~----t~p~irD~DgSvylR~~~~g-il~GGyE~n~i~~egv~~-----------------------~~~~~l  319 (856)
T KOG2844|consen  268 RIEGVSSL----TRPNIRDLDGSVYLRQQGDG-ILFGGYESNPIFTEGVPP-----------------------GFATGL  319 (856)
T ss_pred             ccCCccCC----CccceecccceEEEEecCCc-eeccccccCceeccccCC-----------------------cccccc
Confidence            76532111    11111111235799888655 667776432211111100                       011112


Q ss_pred             HHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEeeCCCCccc-------cccceeeeecCCccccchHHHHHHHH
Q psy7710         367 KEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLV-------DDFGVKAIHSPHTGIVDWGLVTRVMG  439 (473)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d~~p~-------~g~~~~~g~~~~~gi~~~~~~a~~~g  439 (473)
                      +|... ...+..++.+.++.|.|++..|.+.-+|..  ++|||.+|+       .|+|+++|+++ .|++.+|++++.++
T Consensus       320 qE~DW-d~F~~hlesai~r~P~l~k~~i~~~v~gpe--~ftPD~~p~mGe~p~~~gy~v~~G~ns-~G~~~~GG~Gk~la  395 (856)
T KOG2844|consen  320 QEPDW-DHFEPHLEAAIERVPVLEKAGIKSLVNGPE--TFTPDHLPIMGESPEVRGYWVACGFNS-AGLSFGGGCGKYLA  395 (856)
T ss_pred             ccccH-hhhHHHHHHHHHhCchhhhcCccceecCcc--ccCCccccccCCCccccceEEeecCCc-cceeccCchhHHHH
Confidence            22111 122566799999999999999999999987  559999986       69999999986 47888999999999


Q ss_pred             HHHHhhCCeEecc-cceeecc
Q psy7710         440 EEFCELGGEIRLN-QQVESFK  459 (473)
Q Consensus       440 ~~~~~~~~~~~~~-~~~~~~~  459 (473)
                      +||+++.++.++. .++.||-
T Consensus       396 ~wi~~g~p~~d~~~~D~~Rf~  416 (856)
T KOG2844|consen  396 EWIIHGQPPLDVHELDLRRFG  416 (856)
T ss_pred             HHhhcCCCCccchhccHHHhh
Confidence            9999999999888 8999996

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=100.00  E-value=4.2e-35  Score=305.15  Aligned_cols=346  Identities=14%  Similarity=0.151  Sum_probs=250.3

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHH----HhHHHHHHH
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCV----EGMNLAYEY  132 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  132 (473)
                      .+||+|||||++|+++|++|+++  |.+|+|+|++..++.++|+++.|++++.+..... ...++..    .+.+.|.++
T Consensus       260 ~~dVvIIGaGIaG~s~A~~La~~--G~~V~VlE~~~~~~~gaSg~~~G~l~~~~~~~~~-~~~~l~~~a~~~a~~~~~~l  336 (662)
T PRK01747        260 ARDAAIIGGGIAGAALALALARR--GWQVTLYEADEAPAQGASGNRQGALYPLLSKDDN-ALSRFFRAAFLFARRFYDAL  336 (662)
T ss_pred             CCCEEEECccHHHHHHHHHHHHC--CCeEEEEecCCCccccCCcCcccccccccCCCCC-HHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999  9999999998668899999999999876533222 2233333    455666666


Q ss_pred             HHhcC--CCCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHH
Q psy7710         133 FDKRN--IPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRV  209 (473)
Q Consensus       133 ~~~~~--~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  209 (473)
                      . +.+  ..+..+|.+.++.++ +.+.+.+..+.... +. ..++++.+++.+..+.....++++.+.+++++|..++..
T Consensus       337 ~-~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~-~~-~~~~l~~~e~~~~~~~~~~~~g~~~p~~G~v~p~~l~~a  413 (662)
T PRK01747        337 P-AAGVAFDHDWCGVLQLAWDEKSAEKIAKMLALGLP-AE-LARALDAEEAEELAGLPVPCGGIFYPQGGWLCPAELCRA  413 (662)
T ss_pred             H-hcCCCCCCCCCceEEeecCchHHHHHHHHHhccCc-hH-hhhhCCHHHHHHHhCCCCCCCcEEeCCCCeeCHHHHHHH
Confidence            5 334  356778999998877 66556555543322 22 367889999888877555578999999999999999999


Q ss_pred             HHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcCc
Q psy7710         210 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAK  289 (473)
Q Consensus       210 l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~~  289 (473)
                      |.+.+++ |++++++++|+++..++++|.|++++|..++||.||+|+|.|+..+.+..    ..++.|+|||++.++...
T Consensus       414 L~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~~l~~~~----~lpl~p~RGqv~~~~~~~  488 (662)
T PRK01747        414 LLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAARFAQTA----HLPLYSVRGQVSHLPTTP  488 (662)
T ss_pred             HHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcccccccc----CCCcccccceEEeecCCc
Confidence            9999999 99999999999999888888899888866789999999999998776643    347899999999886543


Q ss_pred             ccCcccccccCCCCCCCccEEEEec-CCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhhchHH
Q psy7710         290 QHLVRGNIYPVPDPNFPFLGVHFTP-RMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKE  368 (473)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~p-~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (473)
                      ...       ...... ..+.|++| ..+|.+++|++.+..    +.+. ..+..                     .   
T Consensus       489 ~~~-------~~~~~~-~~~~Y~~p~~~~g~~~iGat~~~~----~~~~-~~~~~---------------------~---  531 (662)
T PRK01747        489 ALS-------ALKQVL-CYDGYLTPQPANGTHCIGASYDRD----DTDT-AFREA---------------------D---  531 (662)
T ss_pred             ccc-------ccCcee-ECCceeCCCCCCCceEeCcccCCC----CCCC-CCCHH---------------------H---
Confidence            211       000001 12469999 778899999986532    1110 00110                     0   


Q ss_pred             HHhhhcchhHHHHHhhcccCC-----CCCCcccCCCeeceEeeCCCCcccc-----------------------------
Q psy7710         369 MIMSWFPSMRVNELKQYIEEI-----EAGDIQRGPSGVRAQALSSSGDLVD-----------------------------  414 (473)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~P~l-----~~~~i~~~w~G~rp~~~t~d~~p~~-----------------------------  414 (473)
                            .+.+++.+.+++|.+     .+.++.+.|+|+||+  |+|+.|++                             
T Consensus       532 ------~~~~~~~l~~~~P~l~~~~~~~~~~~~~~aG~R~~--tpD~~PiIG~~~~~~~~~~~y~~l~~~~~~~~~~~~~  603 (662)
T PRK01747        532 ------HQENLERLAECLPQALWAKEVDVSALQGRVGFRCA--SRDRLPMVGNVPDEAATLAEYAALANQQPARDAPRLP  603 (662)
T ss_pred             ------HHHHHHHHHHhCCCchhhhccCccccCceEEEecc--CCCcccccCCCCCHHHHHHHHHhhhhccccccCCCCC
Confidence                  234468899999987     567889999999987  89998864                             


Q ss_pred             ccceeeeecCCccccchHHHHHHHHHHHHhhCCeEe----cccceeecc
Q psy7710         415 DFGVKAIHSPHTGIVDWGLVTRVMGEEFCELGGEIR----LNQQVESFK  459 (473)
Q Consensus       415 g~~~~~g~~~~~gi~~~~~~a~~~g~~~~~~~~~~~----~~~~~~~~~  459 (473)
                      |+|+++||+++ |+..++.+|+.++++|+....+++    ..++-.||.
T Consensus       604 gl~v~~G~gs~-Gl~~ap~~a~~lA~li~g~~~p~~~~~~~~~~p~Rf~  651 (662)
T PRK01747        604 GLYVAGALGSR-GLCSAPLGAELLASQIEGEPLPLERDLLAALHPNRFW  651 (662)
T ss_pred             CeEEEeccccc-HHHHHHHHHHHHHHHHhCCCCCCCHHHHHhhChHHHH
Confidence            56899998775 575555556666665543222222    235555664

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=100.00  E-value=9.3e-34  Score=287.44  Aligned_cols=302  Identities=20%  Similarity=0.286  Sum_probs=225.9

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCC-chhHHHHHHHhHHHHHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKP-GTLKAKLCVEGMNLAYEYFD  134 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  134 (473)
                      ..+||+|||||++|+++|++|+++  |++|+|||++ .++.++|++|.|++|.+..|.. .....+.+..+.+.+.++..
T Consensus         5 ~~~DVvIIGGGi~G~~iA~~La~r--G~~V~LlEk~-d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~   81 (546)
T PRK11101          5 QETDVIIIGGGATGAGIARDCALR--GLRCILVERH-DIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIAR   81 (546)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHc--CCeEEEEECC-CCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhch
Confidence            468999999999999999999999  9999999997 7899999999999999876542 33334455555555555544


Q ss_pred             hcCCCCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCccc--ceeEecCCccceeHHHHHHHHH
Q psy7710         135 KRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG--VKAIHSPNTGIVDWGLVTRVMG  211 (473)
Q Consensus       135 ~~~~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~l~  211 (473)
                      ..   +.+.+.+.+...+ +...+...+..+...|+ +.++++++++.+++|.++.  .++++.+ ++++||.+++..+.
T Consensus        82 ~~---~~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi-~~~~l~~~e~~~~eP~l~~~~~ga~~~~-dg~vdp~rl~~al~  156 (546)
T PRK11101         82 HC---VEPTDGLFITLPEDDLAFQATFIRACEEAGI-EAEAIDPQQALILEPAVNPALIGAVKVP-DGTVDPFRLTAANM  156 (546)
T ss_pred             Hh---hcccCCceEEeccccHHHHHHHHHHHHHcCC-CcEEECHHHHHHhCCCcCccceEEEEec-CcEECHHHHHHHHH
Confidence            32   4556667776666 66666677777788888 6899999999999998865  6788888 58999999999999


Q ss_pred             HHHHHcCcEEEeCceEEEEEEcCCeEE-EEc---CCC--cEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEe
Q psy7710         212 EEFCELGGEIRLNQQVESFKENPESVT-IST---KQG--DHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLL  285 (473)
Q Consensus       212 ~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~~---~~g--~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~  285 (473)
                      +.++++|++++++++|+++..+++++. |++   .++  .+++||.||+|+|.|+..|.+++|++  .++.|.||+++.+
T Consensus       157 ~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l~~~~g~~--~~i~p~kG~~lv~  234 (546)
T PRK11101        157 LDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHIAEYADLR--IRMFPAKGSLLIM  234 (546)
T ss_pred             HHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHHHHhcCCC--CceeecceEEEEE
Confidence            999999999999999999988776542 442   222  37999999999999999999988865  4899999999999


Q ss_pred             CcCcccCcccccccCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhhc
Q psy7710         286 NPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYG  365 (473)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (473)
                      +.....   ..++.++.   |..+.++.|. ++.+++|+|.+... .++.  .+..+                   +.++
T Consensus       235 ~~~~~~---~vi~~~~~---~~~~~~~vp~-~~~~liGtT~~~~~-~~~~--~~~~~-------------------t~~~  285 (546)
T PRK11101        235 DHRINN---HVINRCRK---PADADILVPG-DTISLIGTTSTRID-YDQI--DDNRV-------------------TAEE  285 (546)
T ss_pred             CCccCc---eeEeccCC---CCCCCEEEec-CCEEEEeeCCCCcc-CCCc--CCCCC-------------------CHHH
Confidence            754321   11222211   1223356674 67789999865321 0000  00011                   1111


Q ss_pred             hHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEe
Q psy7710         366 SKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQA  405 (473)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~  405 (473)
                               ++.+++.+.+++|.|...+|++.|+|+||..
T Consensus       286 ---------i~~Ll~~~~~l~P~l~~~~i~~~~aGvRPl~  316 (546)
T PRK11101        286 ---------VDILLREGEKLAPVMAKTRILRAYAGVRPLV  316 (546)
T ss_pred             ---------HHHHHHHHHHhCCCCCccCEEEEEEEeccCC
Confidence                     3456689999999999999999999999974

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=100.00  E-value=2e-33  Score=276.78  Aligned_cols=349  Identities=23%  Similarity=0.248  Sum_probs=255.1

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCC-chhHHHHHHHhHHHHHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKP-GTLKAKLCVEGMNLAYEYFD  134 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  134 (473)
                      .++||+|||||++|+++||+|+++  |.+|+|+|++ .++.++|+++.+.+...+.... ......+...+...|..+.+
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~--G~~V~vie~~-~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAER--GADVTVLEAG-EAGGGAAGRNAGGILAPWASPGGELEVRPLADLSLALWRELSE   79 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHc--CCEEEEEecC-ccCCcchhcchhhhccccccCCccchhhhhhHHHHHHHHHHHH
Confidence            578999999999999999999999  8899999998 6777888888887776554322 22345567777788888887


Q ss_pred             hcCC--CCcccCeEEEEeCcC---hhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCccc---ceeEecCCccceeHHHH
Q psy7710         135 KRNI--PYKKCGKLIVALNEQ---LEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG---VKAIHSPNTGIVDWGLV  206 (473)
Q Consensus       135 ~~~~--~~~~~g~l~~~~~~~---~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~  206 (473)
                      ....  .+...+.+.......   ........+....... ..+.++..+..+..|.+..   .++++.+..+.++|..+
T Consensus        80 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~l~~~~~~~a~~~~~~~~~~p~~~  158 (387)
T COG0665          80 ELGTGAGLRRRGLLDLAAREGLKGLAQLERLAAELEAAGE-DAELLDAAEAAELEPALGPDFVCGGLFDPTGGHLDPRLL  158 (387)
T ss_pred             HhCcchhcchhhhhhhhhccccchHHHHHHHHHHHHhcCC-CceeCCHHHHHHhCCCCCcccceeeEecCCCCcCCHHHH
Confidence            7664  466777776665542   1233444444444444 3357888899999987764   58899999999999999


Q ss_pred             HHHHHHHHHHcC-cEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEe
Q psy7710         207 TRVMGEEFCELG-GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLL  285 (473)
Q Consensus       207 ~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~  285 (473)
                      +..+.+.++++| ..+..++.|..+..+++.+.|.|.+| ++.||.||+|+|+|+..+...++ ....++.|+++|++.+
T Consensus       159 ~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g-~i~a~~vv~a~G~~~~~l~~~~~-~~~~~~~p~~~~~~~~  236 (387)
T COG0665         159 TRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGG-TIEADKVVLAAGAWAGELAATLG-ELPLPLRPVRGQALTT  236 (387)
T ss_pred             HHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCc-cEEeCEEEEcCchHHHHHHHhcC-CCcCccccccceEEEe
Confidence            999999999999 46666889998887435678999999 69999999999999999999998 3345899999999999


Q ss_pred             CcCcccCcccccccCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhhc
Q psy7710         286 NPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYG  365 (473)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (473)
                      ++.......... + ..........|++|..++++++|++.+...     +. +.++.                   .  
T Consensus       237 ~~~~~~~~~~~~-~-~~~~~~~~~~y~~~~~~g~~~~g~~~~~~~-----~~-~~~~~-------------------~--  287 (387)
T COG0665         237 EPPEGLLADGLA-P-VVLVVDDGGGYIRPRGDGRLRVGGTDEEGG-----DD-PSDPE-------------------R--  287 (387)
T ss_pred             cCCCcccccccc-c-eEEEecCCceEEEEcCCCcEEEeecccccC-----CC-Ccccc-------------------C--
Confidence            877543211100 0 000111235799999899999999865431     00 00000                   0  


Q ss_pred             hHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEeeCCCCccccc-------cceeeeecCCccccchHHHHHHH
Q psy7710         366 SKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVDD-------FGVKAIHSPHTGIVDWGLVTRVM  438 (473)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d~~p~~g-------~~~~~g~~~~~gi~~~~~~a~~~  438 (473)
                      .+.     ....+++.+.+++|.+.+..+...|+|+||.+ +||+.|++|       +|+++||++| |+..++.+|..+
T Consensus       288 ~~~-----~~~~l~~~~~~~~P~l~~~~~~~~w~g~~~~t-~pd~~P~iG~~~~~~~l~~a~G~~~~-G~~~~p~~g~~l  360 (387)
T COG0665         288 EDL-----VIAELLRVARALLPGLADAGIEAAWAGLRPPT-TPDGLPVIGRAAPLPNLYVATGHGGH-GFTLAPALGRLL  360 (387)
T ss_pred             cch-----hHHHHHHHHHHhCccccccccceeeeccccCC-CCCCCceeCCCCCCCCEEEEecCCCc-ChhhccHHHHHH
Confidence            000     12355699999999999999999999999872 399999855       8999999876 575555555555


Q ss_pred             HHHHHhhC
Q psy7710         439 GEEFCELG  446 (473)
Q Consensus       439 g~~~~~~~  446 (473)
                      ++++....
T Consensus       361 A~li~g~~  368 (387)
T COG0665         361 ADLILGGE  368 (387)
T ss_pred             HHHHcCCC
Confidence            55555543

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=100.00  E-value=1.2e-32  Score=266.06  Aligned_cols=316  Identities=20%  Similarity=0.289  Sum_probs=242.2

Q ss_pred             HHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCC-CchhHHHHHHHhHHHHHHHHHhc----C--CCCcccCeE
Q psy7710          74 RELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYK-PGTLKAKLCVEGMNLAYEYFDKR----N--IPYKKCGKL  146 (473)
Q Consensus        74 ~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~g~l  146 (473)
                      |+|+++  |.+|+|||++ .++.++|++|+|++.+..... .......+...+.+.|.++.++.    +  ..+.+.|.+
T Consensus         1 ~~La~~--G~~V~vle~~-~~~~gaS~~~~g~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~~~~~~~~~G~l   77 (337)
T TIGR02352         1 WELAKR--GHSVTLFDRD-PMGGGASWAAAGMLAPHAECEYAEDPLFDLALESLRLYPEWLEALKELTGLDTGYHQCGTL   77 (337)
T ss_pred             ChHHHC--CCceEEEcCC-CCCcccchhhhcCcccccccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCcCeEEccEE
Confidence            578999  8999999998 599999999999987653211 22234667888889998887654    3  456789999


Q ss_pred             EEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCccc--ceeEecCCccceeHHHHHHHHHHHHHHcCcEEEe
Q psy7710         147 IVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG--VKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRL  223 (473)
Q Consensus       147 ~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~  223 (473)
                      .++.++ +.+.+++..+..+..+. ..++++.+++.+.+|.+..  .++++.+.+|+++|..++..|.+.++++|+++++
T Consensus        78 ~~a~~~~~~~~l~~~~~~~~~~~~-~~~~l~~~e~~~~~p~l~~~~~~g~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~  156 (337)
T TIGR02352        78 VVAFDEDDVEHLRQLADLQSATGM-EVEWLSGRALRRLEPYLSGGIRGAVFYPDDAHVDPRALLKALEKALEKLGVEIIE  156 (337)
T ss_pred             EEeCCHHHHHHHHHHHHHHHhcCC-ceEEcCHHHHHHhCCCCCcccceEEEcCCCceEChHHHHHHHHHHHHHcCCEEEc
Confidence            999887 88888888888888887 7899999999999988753  6899999999999999999999999999999999


Q ss_pred             CceEEEEEEcCCeE-EEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcCcccCcccccccCCC
Q psy7710         224 NQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPD  302 (473)
Q Consensus       224 ~~~V~~i~~~~~~v-~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~  302 (473)
                      +++|++|..+++.+ .|.+++| +++||.||+|+|+|+..|..       .++.|++||++.++++.......   +...
T Consensus       157 ~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~~l~~-------~~~~~~~g~~~~~~~~~~~~~~~---~~~~  225 (337)
T TIGR02352       157 HTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAGELLP-------LPLRPVRGQPLRLEAPAVPLLNR---PLRA  225 (337)
T ss_pred             cceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhhhccc-------CCccccCceEEEeeccccccCCc---ccce
Confidence            99999999877765 4888888 89999999999999987754       36789999999987552111000   1100


Q ss_pred             CCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhhchHHHHhhhcchhHHHHH
Q psy7710         303 PNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNEL  382 (473)
Q Consensus       303 ~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (473)
                       .......|++|..+|++++|++....    ..+. ..+.                              +..+.+++.+
T Consensus       226 -~~~~~~~y~~p~~~g~~~iG~~~~~~----~~~~-~~~~------------------------------~~~~~l~~~~  269 (337)
T TIGR02352       226 -VVYGRRVYIVPRRDGRLVVGATMEES----GFDT-TPTL------------------------------GGIKELLRDA  269 (337)
T ss_pred             -EEEcCCEEEEEcCCCeEEEEEecccc----CccC-CCCH------------------------------HHHHHHHHHH
Confidence             00122479999988999999875421    1110 0000                              0134556899


Q ss_pred             hhcccCCCCCCcccCCCeeceEeeCCCCccc-------cccceeeeecCCccccchHHHHHHHHHHHH
Q psy7710         383 KQYIEEIEAGDIQRGPSGVRAQALSSSGDLV-------DDFGVKAIHSPHTGIVDWGLVTRVMGEEFC  443 (473)
Q Consensus       383 ~~~~P~l~~~~i~~~w~G~rp~~~t~d~~p~-------~g~~~~~g~~~~~gi~~~~~~a~~~g~~~~  443 (473)
                      .++||.+.+.++.+.|+|+||+  |+|+.|+       .|+|+++||+++ |+..++.+|..++++|.
T Consensus       270 ~~~~P~l~~~~~~~~~~g~r~~--t~D~~piig~~~~~~~~~~~~g~~g~-G~~~~p~~g~~la~~i~  334 (337)
T TIGR02352       270 YTILPALKEARLLETWAGLRPG--TPDNLPYIGEHPEDRRLLIATGHYRN-GILLAPATAEVIADLIL  334 (337)
T ss_pred             HHhCCCcccCcHHHheecCCCC--CCCCCCEeCccCCCCCEEEEcccccC-ceehhhHHHHHHHHHHh
Confidence            9999999999999999999987  8999987       468999999876 57555555555555544

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=100.00  E-value=7.5e-33  Score=271.17  Aligned_cols=316  Identities=16%  Similarity=0.184  Sum_probs=230.7

Q ss_pred             HHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHH----HhHHHHHHHHHh-cCCCCcccCeE
Q psy7710          72 TARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCV----EGMNLAYEYFDK-RNIPYKKCGKL  146 (473)
Q Consensus        72 ~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~g~l  146 (473)
                      +||+|+++  |.+|+|||++..++.++|+++.|++++........ ..++..    .+.+.|.++.++ ....+.+.|.+
T Consensus         1 ~A~~La~~--G~~V~vlE~~~~~~~gaSg~~~G~l~~~~~~~~~~-~~~l~~~~~~~a~~l~~~l~~~~~~~~~~~~G~L   77 (381)
T TIGR03197         1 TAYSLARR--GWQVTLYEQDEAPAQGASGNPQGALYPLLSADDNP-LSRFFLAAFLYARRFYRQLAEAGFPFDHEWCGVL   77 (381)
T ss_pred             ChHHHHhC--CCeeEEEeCCCcccccCCCChhheeeeecCCCCCH-HHHHHHHHHHHHHHHHHHHHhcCCCcccccCceE
Confidence            58999999  99999999975689999999999998865433322 233433    445556665443 12357789999


Q ss_pred             EEEeCc-ChhhHHHHHHHHHhCCCC--cceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHHHcCcEEEe
Q psy7710         147 IVALNE-QLEPLHDLYERSIQNNVK--DVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRL  223 (473)
Q Consensus       147 ~~~~~~-~~~~~~~~~~~~~~~g~~--~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~  223 (473)
                      .++.++ +.+.+.+..   ...+.+  ..++++.+++....+.....++++.+.++++||..++..|.+.+++ |+++++
T Consensus        78 ~~a~~~~~~~~l~~~~---~~~~~~~~~~~~l~~~e~~~~~~~~~~~gal~~~~~g~idp~~~~~~l~~~~~~-G~~i~~  153 (381)
T TIGR03197        78 QLAYDEKEAERLQKLL---EQLGFPEELARWVDAEQASQLAGIPLPYGGLFFPQGGWLSPPQLCRALLAHAGI-RLTLHF  153 (381)
T ss_pred             EecCChHHHHHHHHHH---HhcCCCHHHheeCCHHHHHHhcCCCCCCCceEeCCCcccChHHHHHHHHhccCC-CcEEEe
Confidence            998776 555444433   334442  1457888898888765444688999999999999999999999999 999999


Q ss_pred             CceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcCcccCcccccccCCCC
Q psy7710         224 NQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDP  303 (473)
Q Consensus       224 ~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~  303 (473)
                      +++|.+|..+++++.|+|.+|..++||.||+|+|.|+..+.+..    ..++.|+|||++.+.++....    ..+..  
T Consensus       154 ~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~~l~~~~----~~pi~p~rg~~~~~~~~~~~~----~~~~~--  223 (381)
T TIGR03197       154 NTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAGQLAQTA----HLPLRPVRGQVSHLPATEALS----ALKTV--  223 (381)
T ss_pred             CCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccccccccc----cCCccccccceeeccCCCccc----ccCce--
Confidence            99999999888888999988866999999999999998887653    347899999999987543110    00100  


Q ss_pred             CCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhhchHHHHhhhcchhHHHHHh
Q psy7710         304 NFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELK  383 (473)
Q Consensus       304 ~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (473)
                       . ..+.|++|+.+|++++|++.+..    ..+. ..+.                     .         ..+.+++.+.
T Consensus       224 -~-~~~~y~~p~~~g~~~iG~t~~~~----~~~~-~~~~---------------------~---------~~~~~~~~~~  266 (381)
T TIGR03197       224 -L-CYDGYLTPANNGEHCIGASYDRN----DDDL-ALRE---------------------A---------DHAENLERLA  266 (381)
T ss_pred             -E-eCCceecccCCCceEeecccCCC----CCCC-CcCH---------------------H---------HHHHHHHHHH
Confidence             0 12359999999999999875432    1110 0000                     0         1234568999


Q ss_pred             hcccCCC-----CCCcccCCCeeceEeeCCCCcccc--------------------------------ccceeeeecCCc
Q psy7710         384 QYIEEIE-----AGDIQRGPSGVRAQALSSSGDLVD--------------------------------DFGVKAIHSPHT  426 (473)
Q Consensus       384 ~~~P~l~-----~~~i~~~w~G~rp~~~t~d~~p~~--------------------------------g~~~~~g~~~~~  426 (473)
                      +++|.+.     +.++++.|+|+||+  |+|+.|++                                |+|+++||+++ 
T Consensus       267 ~~~P~l~~~~~~~~~~~~~~~G~r~~--t~D~~Piig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~G~~g~-  343 (381)
T TIGR03197       267 ECLPALAWASEVDISALQGRVGVRCA--SPDHLPLVGAVPDFEAIKEAYAELAKDKNRPIAEPAPYYPGLYVLGGLGSR-  343 (381)
T ss_pred             HhCcccchhhccCccccCceEEEecc--CCCcCccCCCCCCHHHHHHHHHHhcccccccccccCCCCCCeEEEecccch-
Confidence            9999997     78999999999987  89998873                                58999998765 


Q ss_pred             cccchHHHHHHHHHHHHh
Q psy7710         427 GIVDWGLVTRVMGEEFCE  444 (473)
Q Consensus       427 gi~~~~~~a~~~g~~~~~  444 (473)
                      |+..++.+|+.++++|+.
T Consensus       344 G~~~ap~~g~~la~~i~~  361 (381)
T TIGR03197       344 GLTSAPLAAEILAAQICG  361 (381)
T ss_pred             HHHHHHHHHHHHHHHHhC
Confidence            676555666666666643

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>KOG2853|consensus

Probab=100.00  E-value=1.3e-31  Score=238.20  Aligned_cols=360  Identities=16%  Similarity=0.161  Sum_probs=249.3

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcC--CCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNY--PKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYF  133 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~--~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (473)
                      .++||+|||||..|+++|++|.++.  -|++|+|+|+++.....++..+.|.+...+.. |+..  .+...+.+.++..-
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSl-pEnI--qmSLF~a~Flr~a~  161 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSL-PENI--QMSLFTAEFLRNAR  161 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeeccc-chhh--hhhhHHHHHHHHHH
Confidence            4789999999999999999997642  26999999999777666677777777766543 3222  23334444444433


Q ss_pred             Hhc--------CCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCccc----ceeEecCCccce
Q psy7710         134 DKR--------NIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG----VKAIHSPNTGIV  201 (473)
Q Consensus       134 ~~~--------~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~----~~~~~~~~~~~~  201 (473)
                      +.+        ++.|.+.|++.++.+++.+.+....+...+.|. ..++++++++.+.+|+++.    .+.+-...+|++
T Consensus       162 ehl~~~d~~~vdl~f~P~GyL~LA~ee~ae~m~s~~kvQ~e~GA-k~eLls~d~Lt~rfPwlntegVaLa~lG~e~EGwf  240 (509)
T KOG2853|consen  162 EHLGILDSEQVDLNFFPTGYLRLASEEEAEMMRSNSKVQNELGA-KVELLSPDELTKRFPWLNTEGVALASLGVEKEGWF  240 (509)
T ss_pred             HhhccccCCCCCcccCCCceEEEcchhhHHHHHHhHHHHHhhcc-hhcccCHHHHhhhCCcccccceeeeeccccccccc
Confidence            333        345889999999996688888888888888888 7899999999999999885    344456789999


Q ss_pred             eHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcC----------C----------eEEEEcCCC--cEEEcCEEEEcCCcC
Q psy7710         202 DWGLVTRVMGEEFCELGGEIRLNQQVESFKENP----------E----------SVTISTKQG--DHLESSYALVCAGLQ  259 (473)
Q Consensus       202 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~----------~----------~v~v~~~~g--~~i~ad~VV~aaG~~  259 (473)
                      ||..+...+.+.+...|+.+. +-+|+.++.+.          +          ++.|+.+++  +.+++..+|+|+|+|
T Consensus       241 dpw~LLs~~rrk~~~lGv~f~-~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAGa~  319 (509)
T KOG2853|consen  241 DPWALLSGIRRKAITLGVQFV-KGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAGAW  319 (509)
T ss_pred             CHHHHHHHHHHHhhhhcceEe-cceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccCcc
Confidence            999999999999999999986 55677776542          1          234555554  468899999999999


Q ss_pred             hHHHHHhcCCCCC-------CceeeeeeEEEEeCcCcccCcccccccCCCCCCCccEEEEecCCCC-eEEECCCcccccc
Q psy7710         260 ADEMALKSGCSLE-------PAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDG-SVWLGPNAVLAFK  331 (473)
Q Consensus       260 s~~l~~~~g~~~~-------~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g-~~~iG~~~~~~~~  331 (473)
                      |.++++++||...       .|+.|.|-++.++..+...   ..  ..|-... ..|+|++...-| +++.|-+.... .
T Consensus       320 s~QvArlAgIG~g~g~L~vplPiepRKRyvyvi~~~~~P---Gl--~~Pl~iD-psG~f~Rrdglg~nfl~grsp~ed-~  392 (509)
T KOG2853|consen  320 SGQVARLAGIGKGPGLLAVPLPIEPRKRYVYVIFAPDVP---GL--DTPLTID-PSGVFFRRDGLGGNFLCGRSPSED-E  392 (509)
T ss_pred             HHHHHHHhccCCCCceeeecccCCccceeEEEEeCCCCC---CC--CCceeEC-CCccEEEecCCCCceecccCCccc-c
Confidence            9999999988743       3566667666666544211   00  1111111 238899887544 45554332111 1


Q ss_pred             ccCcccccchhHHHhhhccCCcchhccchhhhhchHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEeeCCCCc
Q psy7710         332 KEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGD  411 (473)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d~~  411 (473)
                      ..+++..+.|                             .+.|.+.++..+...+|.+..++|++.|+|++... |-|..
T Consensus       393 ~~d~~nldVD-----------------------------~d~F~qkiwP~L~nRVP~fetakVqsaWaGyyD~N-tfD~n  442 (509)
T KOG2853|consen  393 EPDHSNLDVD-----------------------------HDYFYQKIWPHLANRVPAFETAKVQSAWAGYYDHN-TFDDN  442 (509)
T ss_pred             CCCccccccC-----------------------------hHHHHhhhhHHHHhcccccceeeeeehhccccccc-ccccC
Confidence            1122222222                             23455677899999999999999999999999862 44433


Q ss_pred             ------cc-cccceeeeecCCccccchHHHHHHHHHHHHhh-CCeEecc-cceeec
Q psy7710         412 ------LV-DDFGVKAIHSPHTGIVDWGLVTRVMGEEFCEL-GGEIRLN-QQVESF  458 (473)
Q Consensus       412 ------p~-~g~~~~~g~~~~~gi~~~~~~a~~~g~~~~~~-~~~~~~~-~~~~~~  458 (473)
                            |. .++|++|||++|+ +.-++.++.+++++|.++ --.|+++ +..+||
T Consensus       443 gViG~HP~y~Nly~atGFsghG-vqqs~avgRAiaElIldG~f~tidLsrf~f~Rl  497 (509)
T KOG2853|consen  443 GVIGEHPLYTNLYMATGFSGHG-VQQSPAVGRAIAELILDGAFITIDLSRFDFRRL  497 (509)
T ss_pred             CcccCCcceeeeeeeecccccc-hhcchHHHHHHHHHHhcCceeEEeccccchhHH
Confidence                  32 6899999999984 766666666666666655 3344444 444444

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=100.00  E-value=9.5e-31  Score=268.15  Aligned_cols=315  Identities=16%  Similarity=0.173  Sum_probs=208.8

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCch------hHHHHHHHhHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGT------LKAKLCVEGMNLA  129 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~------~~~~~~~~~~~~~  129 (473)
                      .++||+|||||++|+++|++|+++  |++|+|||++ .+++++|+++.+++|.+..|....      ....+.+.+....
T Consensus        70 ~~~DVvVIGGGi~Ga~~A~~lA~r--Gl~V~LvE~~-d~a~GtSsrss~lihgg~ryl~~~~~~~~~~~~~l~~e~l~er  146 (627)
T PLN02464         70 EPLDVLVVGGGATGAGVALDAATR--GLRVGLVERE-DFSSGTSSRSTKLIHGGVRYLEKAVFQLDYGQLKLVFHALEER  146 (627)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhC--CCEEEEEecc-ccCCCcccchhhhhhhHHHHHHHHhhCCCccceeehHHHHHHH
Confidence            459999999999999999999999  9999999999 799999999999999886442211      0112333333333


Q ss_pred             HHHHHhcCCCCcccCeEEEEeCc-ChhhHH---HHHHHHH-hCCCCcceeeCHHHHHhhcCCccc------ceeEecCCc
Q psy7710         130 YEYFDKRNIPYKKCGKLIVALNE-QLEPLH---DLYERSI-QNNVKDVRLVSAEEIKTIEPYCKG------VKAIHSPNT  198 (473)
Q Consensus       130 ~~~~~~~~~~~~~~g~l~~~~~~-~~~~~~---~~~~~~~-~~g~~~~~~l~~~~~~~~~p~~~~------~~~~~~~~~  198 (473)
                      ..+.+....-....+.+...... +...+.   ..+.... ..+.+..++++++++.+++|.+..      +.+.+.+.+
T Consensus       147 ~~l~~~ap~l~~~l~~~~p~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~e~~~~~P~L~~~~~~~~l~ga~~~~D  226 (627)
T PLN02464        147 KQLIENAPHLCHALPIMTPCYDWFEVPYYWAGLKAYDLVAGPRLLHLSRYYSAKESLELFPTLAKKGKDGSLKGTVVYYD  226 (627)
T ss_pred             HHHHhhChhhccccceeeeccchhhhHHHHHHHHHHHHhcCCcCCCCceEECHHHHHHhCCCCCccccccceeEEEEecC
Confidence            33322221111111222221111 111111   1111111 123334688999999999998863      445556778


Q ss_pred             cceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEc--CCeE-EEEc---CCCc--EEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710         199 GIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKEN--PESV-TIST---KQGD--HLESSYALVCAGLQADEMALKSGCS  270 (473)
Q Consensus       199 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~--~~~v-~v~~---~~g~--~i~ad~VV~aaG~~s~~l~~~~g~~  270 (473)
                      +++||.+++..|.+.++++|++++.+++|+++..+  ++.+ .|+.   .++.  +++||.||+|+|+|+..+++++|..
T Consensus       227 g~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g~~  306 (627)
T PLN02464        227 GQMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMADGK  306 (627)
T ss_pred             cEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhccCc
Confidence            99999999999999999999999999999999875  3433 3332   2232  6899999999999999999998755


Q ss_pred             CCCceeeeeeEEEEeCcCcccCcccccccCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhcc
Q psy7710         271 LEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLR  350 (473)
Q Consensus       271 ~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (473)
                      ..+.+.|.||+++.++..........+++...   ....+|+.|. +|++++|+|.+......     +.++        
T Consensus       307 ~~~~I~p~kG~hlvl~~~~~~~~~~~i~~~~~---dgr~~~~~P~-~g~~liGtTd~~~~~~~-----~~~~--------  369 (627)
T PLN02464        307 AKPMICPSSGVHIVLPDYYSPEGMGLIVPKTK---DGRVVFMLPW-LGRTVAGTTDSKTPITM-----LPEP--------  369 (627)
T ss_pred             CCCceEeeeeEEEecccccCCCCceEEecCCC---CCCEEEEEec-CCcEEEecCCCCCCCCC-----CCCC--------
Confidence            44569999999998854211111122233211   1336899999 88999998865421111     1111        


Q ss_pred             CCcchhccchhhhhchHHHHhhhcchhHHHHHhhccc-CCCCCCcccCCCeeceEeeCCCCcc
Q psy7710         351 YPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIE-EIEAGDIQRGPSGVRAQALSSSGDL  412 (473)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~~~~i~~~w~G~rp~~~t~d~~p  412 (473)
                                 +.++         ++.+++.++++|| .+...+|++.|+|+||.  .+|+.|
T Consensus       370 -----------t~~e---------i~~Ll~~a~~~~~~~l~~~~v~~~waG~RPl--~~d~~~  410 (627)
T PLN02464        370 -----------HEDE---------IQFILDAISDYLNVKVRRSDVLSAWSGIRPL--AVDPSA  410 (627)
T ss_pred             -----------CHHH---------HHHHHHHHHHhhCCCCChhhEEEEEEeEEee--ccCCCC
Confidence                       1111         3466799999999 79999999999999998  455443

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=5.5e-31  Score=265.63  Aligned_cols=308  Identities=16%  Similarity=0.190  Sum_probs=210.5

Q ss_pred             CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHH
Q psy7710          55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFD  134 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (473)
                      ..++||+|||||++|+++|++|+++  |++|+||||+ .+++++|+++++++|.+..|. ......+..++...+..+.+
T Consensus         4 ~~~~DVvIIGGGi~G~~~A~~la~r--G~~V~LlEk~-d~~~GtS~~ss~lihgg~ryl-~~~~~~l~~e~~~e~~~l~~   79 (502)
T PRK13369          4 PETYDLFVIGGGINGAGIARDAAGR--GLKVLLCEKD-DLAQGTSSRSGKLVHGGLRYL-EYYEFRLVREALIEREVLLA   79 (502)
T ss_pred             CcccCEEEECCCHHHHHHHHHHHhC--CCcEEEEECC-CCCCCCchhhhhhHHHHHHHH-HhccHHHHHHHHHHHHHHHH
Confidence            4669999999999999999999999  9999999999 799999999999999887653 22234556666655555554


Q ss_pred             hcCCCCcccCeEEEEeCc-ChhhHH-----HHHHHHH-hCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHH
Q psy7710         135 KRNIPYKKCGKLIVALNE-QLEPLH-----DLYERSI-QNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVT  207 (473)
Q Consensus       135 ~~~~~~~~~g~l~~~~~~-~~~~~~-----~~~~~~~-~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  207 (473)
                      ....-....+ +.+.... +...+.     .+++.+. ...++..+.++..+.....|......+.+.+.+++++|.+++
T Consensus        80 ~ap~l~~~~~-~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~~rl~  158 (502)
T PRK13369         80 AAPHIIWPMR-FVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDDARLV  158 (502)
T ss_pred             hCCccccccc-eEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCchHhcCEEEEEcCeeecHHHHH
Confidence            4321122233 3333332 222222     1111111 122334566776665555554333545567788899999999


Q ss_pred             HHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCC----cEEEcCEEEEcCCcChHHHHHh-cCCCCCCceeeeeeEE
Q psy7710         208 RVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQG----DHLESSYALVCAGLQADEMALK-SGCSLEPAIVPFRGEY  282 (473)
Q Consensus       208 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g----~~i~ad~VV~aaG~~s~~l~~~-~g~~~~~~~~p~~g~~  282 (473)
                      ..+...++++|++++.+++|+++..+++.+.|++.++    .+++|+.||+|+|+|+..+.++ .|....+++.|.||++
T Consensus       159 ~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~~v~p~kG~~  238 (502)
T PRK13369        159 VLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTDVIHRVAGSNSSRNVRLVKGSH  238 (502)
T ss_pred             HHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhccCCCCCcceEEeeEEE
Confidence            9999999999999999999999998887777765443    3589999999999999999874 4765445799999999


Q ss_pred             EEeCcCcccCcccccccCCCCCCCccEEEEecCCCCeEEECCCccccc-cccCcccccchhHHHhhhccCCcchhccchh
Q psy7710         283 LLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAF-KKEGYRWRDFSVRELFSTLRYPGFWRLGLKY  361 (473)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (473)
                      +.++...... ....++.++    ..-+|+.|..++.+++|+|..... ++++.     .+                   
T Consensus       239 lv~~~~~~~~-~~~~~~~~d----gr~~~i~P~~~~~~liGtTd~~~~~~~~~~-----~~-------------------  289 (502)
T PRK13369        239 IVVPKFWDGA-QAYLFQNPD----KRVIFANPYEGDFTLIGTTDIAYEGDPEDV-----AA-------------------  289 (502)
T ss_pred             EEeCCccCCC-ceEEEeCCC----CeEEEEEEecCCEEEEEecCccccCCCCCC-----CC-------------------
Confidence            9986432111 111112211    123689999778888999854210 00110     01                   


Q ss_pred             hhhchHHHHhhhcchhHHHHHhhccc-CCCCCCcccCCCeeceEe
Q psy7710         362 TRYGSKEMIMSWFPSMRVNELKQYIE-EIEAGDIQRGPSGVRAQA  405 (473)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~~~~i~~~w~G~rp~~  405 (473)
                      +.+.         ++.+++.+.++|| .|...+|++.|+|+||.+
T Consensus       290 ~~~~---------i~~ll~~~~~~~~~~l~~~~i~~~waGlRPl~  325 (502)
T PRK13369        290 DEEE---------IDYLLDAANRYFKEKLRREDVVHSFSGVRPLF  325 (502)
T ss_pred             CHHH---------HHHHHHHHHHhhCCCCCHhHEEEEeeceEEcC
Confidence            0111         3466799999997 899999999999999984

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.97  E-value=1.5e-29  Score=254.79  Aligned_cols=317  Identities=16%  Similarity=0.160  Sum_probs=207.7

Q ss_pred             CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHH
Q psy7710          55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFD  134 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (473)
                      ...+||+|||||++|+++|++|+++  |++|+||||+ .+++++|+++.+++|.+..|... ....+...+......+.+
T Consensus         4 ~~~~DVvIIGGGi~G~~~A~~la~r--Gl~V~LvEk~-d~~~GtS~~ss~lihgG~ryl~~-~~~~l~~e~l~er~~l~~   79 (508)
T PRK12266          4 METYDLLVIGGGINGAGIARDAAGR--GLSVLLCEQD-DLASATSSASTKLIHGGLRYLEH-YEFRLVREALAEREVLLR   79 (508)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHC--CCeEEEEecC-CCCCCccccccccccchHHHhhh-ccHHHHHHHHHHHHHHHH
Confidence            3569999999999999999999999  9999999998 79999999999999999876433 234566666666555555


Q ss_pred             hcCCCCcccCeEEEEeCcChhhH-----HHHHHHHHhCCCCcceeeCHHHHHhhc-----CCccc-ceeEecCCccceeH
Q psy7710         135 KRNIPYKKCGKLIVALNEQLEPL-----HDLYERSIQNNVKDVRLVSAEEIKTIE-----PYCKG-VKAIHSPNTGIVDW  203 (473)
Q Consensus       135 ~~~~~~~~~g~l~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~l~~~~~~~~~-----p~~~~-~~~~~~~~~~~~~~  203 (473)
                      ....-..+...+...........     ..+++.+..     ...+...+.....     |.+.. +.+.+.+.++++||
T Consensus        80 ~~p~~~~~l~~~~~~~~~~~~~~~~~~gl~lyd~~~~-----~~~l~~~~~~~~~~~~~~~~L~~~l~g~~~~~dg~vd~  154 (508)
T PRK12266         80 MAPHIIWPMRFVLPHRPHLRPAWMIRAGLFLYDHLGK-----RKSLPGSRGLDLGRDPAGSPLKPEITRGFEYSDCWVDD  154 (508)
T ss_pred             hCCCcccccceEEEecccccchHHHHHHHHHHHhhcC-----CCCCChhhhhchhhcccCCCcchhhcEEEEEcCcccCH
Confidence            43322222222221111111111     111111111     1122222222211     33332 33335577789999


Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCC---C--cEEEcCEEEEcCCcChHHHHHh-cCCCCCCceee
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQ---G--DHLESSYALVCAGLQADEMALK-SGCSLEPAIVP  277 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~---g--~~i~ad~VV~aaG~~s~~l~~~-~g~~~~~~~~p  277 (473)
                      .+++..+.+.++++|++++++++|+++..+++.+.|++.+   |  .+++|+.||+|+|+|+..++++ +|+....++.|
T Consensus       155 ~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~~g~~~~~~i~p  234 (508)
T PRK12266        155 ARLVVLNARDAAERGAEILTRTRVVSARRENGLWHVTLEDTATGKRYTVRARALVNAAGPWVKQFLDDGLGLPSPYGIRL  234 (508)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEEcCCCCEEEEEcCEEEECCCccHHHHHhhccCCCCCcceee
Confidence            9999999999999999999999999998877777665542   4  3689999999999999999775 47655568999


Q ss_pred             eeeEEEEeCcCcccCcccccccCCCCCCCccEEEEecCCCCeEEECCCcccc-ccccCcccccchhHHHhhhccCCcchh
Q psy7710         278 FRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLA-FKKEGYRWRDFSVRELFSTLRYPGFWR  356 (473)
Q Consensus       278 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (473)
                      .+|+++.++...... ...+++.++    ...+|+.|..+|.+++|+|.+.. .+.++.     .++             
T Consensus       235 ~kG~~lvl~~~~~~~-~~~~~~~~d----gr~v~~~P~~~g~~liGttd~~~~~~~~~~-----~~~-------------  291 (508)
T PRK12266        235 VKGSHIVVPRLFDHD-QAYILQNPD----GRIVFAIPYEDDFTLIGTTDVEYKGDPAKV-----AIS-------------  291 (508)
T ss_pred             eeeEEEEECCcCCCC-cEEEEeCCC----CCEEEEEEeCCCeEEEecCCCCCCCCCCCC-----CCC-------------
Confidence            999999986432211 111222222    22368889878899999885421 111110     000             


Q ss_pred             ccchhhhhchHHHHhhhcchhHHHHHhhccc-CCCCCCcccCCCeeceEeeCCCCcc-----ccccceee
Q psy7710         357 LGLKYTRYGSKEMIMSWFPSMRVNELKQYIE-EIEAGDIQRGPSGVRAQALSSSGDL-----VDDFGVKA  420 (473)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~l~~~~i~~~w~G~rp~~~t~d~~p-----~~g~~~~~  420 (473)
                            .+.         ++.+++.+++++| .|...+|++.|+|+||.  ++|+.|     ..++.|..
T Consensus       292 ------~~~---------i~~Ll~~~~~~~p~~l~~~~ii~~waG~RPl--~~d~~~~~~~~sr~~~i~~  344 (508)
T PRK12266        292 ------EEE---------IDYLCKVVNRYFKKQLTPADVVWTYSGVRPL--CDDESDSAQAITRDYTLEL  344 (508)
T ss_pred             ------HHH---------HHHHHHHHHHhcCCCCCHHHEEEEeeeeEee--CCCCCCCcccCCcceEEEe
Confidence                  011         3466799999996 79999999999999998  466544     24555543

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=99.96  E-value=9.4e-28  Score=243.41  Aligned_cols=283  Identities=21%  Similarity=0.278  Sum_probs=215.7

Q ss_pred             HHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCC-CchhHHHHHHHhHHHHHHHHHhcCCCCcccCeEEEEeC
Q psy7710          73 ARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYK-PGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALN  151 (473)
Q Consensus        73 A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~  151 (473)
                      |+.|+++  |++|+||||+ .++.++|++|+|++|.+..|. .+....+.+..+.+.+.++...   .+.+.|.+.+..+
T Consensus         1 ArdLa~r--Gl~V~llEk~-d~~~GaS~rnsglih~G~ry~~~~~~~a~~~~~~~~~l~~~a~~---~~~~~g~L~va~~   74 (516)
T TIGR03377         1 MRDLALR--GLRCILLEQG-DLAHGTTGRNHGLLHSGARYAVTDQESARECIEENRILKRIARH---CVEDTGGLFITLP   74 (516)
T ss_pred             ChhHHHC--CCCEEEEeCC-CcccccccccccCcCcchhhhccCHHHHHHHHHHHHHHHHhChH---hccCCCceEEecC
Confidence            6789999  9999999998 799999999999999987554 3344455666666666666543   3567788888877


Q ss_pred             c-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCccc--ceeEecCCccceeHHHHHHHHHHHHHHcCcEEEeCceEE
Q psy7710         152 E-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG--VKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVE  228 (473)
Q Consensus       152 ~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~  228 (473)
                      + +...+..++..+...|+ +.++++++++.+.+|.+..  .++++.+ ++.+||.+++..+.+.+.++|++|+++++|+
T Consensus        75 ~~~~~~~~~~~~~~~~~gi-~~~~l~~~e~~~~~P~l~~~~~ga~~~~-dg~vdp~~l~~al~~~A~~~Ga~i~~~t~V~  152 (516)
T TIGR03377        75 EDDLEFQKQFLAACREAGI-PAEEIDPAEALRLEPNLNPDLIGAVKVP-DGTVDPFRLVAANVLDAQEHGARIFTYTKVT  152 (516)
T ss_pred             cccHHHHHHHHHHHHHCCC-CceEECHHHHHHHCCCCChhheEEEEeC-CcEECHHHHHHHHHHHHHHcCCEEEcCcEEE
Confidence            6 77777777777888888 6899999999999998864  5778888 6899999999999999999999999999999


Q ss_pred             EEEEcCCeE-EEEc---CCC--cEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcCcccCcccccccCCC
Q psy7710         229 SFKENPESV-TIST---KQG--DHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPD  302 (473)
Q Consensus       229 ~i~~~~~~v-~v~~---~~g--~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~  302 (473)
                      +|..+++++ .|++   .+|  .+++|+.||+|+|+|+..+++++|++  .++.|.||+++.++.....   ..+...+.
T Consensus       153 ~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~~--~~i~p~kG~~lv~~~~~~~---~~~~~~~~  227 (516)
T TIGR03377       153 GLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGLD--IRMFPAKGALLIMNHRINN---TVINRCRK  227 (516)
T ss_pred             EEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCCC--CceecceEEEEEECCcccc---cccccccC
Confidence            999877654 2432   233  37899999999999999999999874  4899999999999754211   11111111


Q ss_pred             CCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhhchHHHHhhhcchhHHHHH
Q psy7710         303 PNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNEL  382 (473)
Q Consensus       303 ~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (473)
                         +..+.|++|. ++.+++|+|.+...+.+++.     +                   +.         +.++.+++.+
T Consensus       228 ---~~~g~~~~P~-~~~~liGtT~~~~~~~~~~~-----~-------------------~~---------~~v~~ll~~~  270 (516)
T TIGR03377       228 ---PSDADILVPG-DTISIIGTTSERIDDPDDLP-----V-------------------TQ---------EEVDVLLREG  270 (516)
T ss_pred             ---CCCCcEEEEC-CCeEEEecCCCCCCCCCCCC-----C-------------------CH---------HHHHHHHHHH
Confidence               1234678896 67889999865321111111     1                   00         1134667999


Q ss_pred             hhcccCCCCCCcccCCCeeceEe
Q psy7710         383 KQYIEEIEAGDIQRGPSGVRAQA  405 (473)
Q Consensus       383 ~~~~P~l~~~~i~~~w~G~rp~~  405 (473)
                      .+++|.|...+|++.|+|+||..
T Consensus       271 ~~~~P~l~~~~i~~~~aGvRPl~  293 (516)
T TIGR03377       271 AKLAPMLAQTRILRAFAGVRPLV  293 (516)
T ss_pred             HHhCcccccCCEEEEEeeccccc
Confidence            99999999999999999999974

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.96  E-value=3.4e-27  Score=229.43  Aligned_cols=309  Identities=20%  Similarity=0.227  Sum_probs=212.7

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK  135 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (473)
                      ..+||+|||||+.|+-+|+.++.+  |++|+|+|++ .+++|+|+++.+++|.|..|.... ...+..++...-.-+.+.
T Consensus        11 ~~~DviVIGGGitG~GiArDaA~R--Gl~v~LvE~~-D~AsGTSsrstkLiHGGlRYl~~~-e~~lvrEal~Er~vL~~~   86 (532)
T COG0578          11 EEFDVIVIGGGITGAGIARDAAGR--GLKVALVEKG-DLASGTSSRSTKLIHGGLRYLEQY-EFSLVREALAEREVLLRI   86 (532)
T ss_pred             cCCCEEEECCchhhHHHHHHHHhC--CCeEEEEecC-cccCcccCccccCccchhhhhhhc-chHHHHHHHHHHHHHHHh
Confidence            679999999999999999999999  9999999999 799999999999999998765432 122333333333333333


Q ss_pred             cCCCCcccCeEEEEeC--c-Chh--hHHHHHHHHHh--CCCCcceeeCHHHHHhhcCCccc--ceeEecCCccceeHHHH
Q psy7710         136 RNIPYKKCGKLIVALN--E-QLE--PLHDLYERSIQ--NNVKDVRLVSAEEIKTIEPYCKG--VKAIHSPNTGIVDWGLV  206 (473)
Q Consensus       136 ~~~~~~~~g~l~~~~~--~-~~~--~~~~~~~~~~~--~g~~~~~~l~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~  206 (473)
                      .+--..+...+....+  . ...  .-...+..+..  ...+..+.++..+...+.|.++.  ..+.+...++++|+.++
T Consensus        87 APH~v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~vddaRL  166 (532)
T COG0578          87 APHLVEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVVDDARL  166 (532)
T ss_pred             CccccccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEccceechHHH
Confidence            3322334444444433  2 111  11112222211  11235677788888888998865  55455566779999999


Q ss_pred             HHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCC---C--cEEEcCEEEEcCCcChHHHHHhcCCCCC--Cceeeee
Q psy7710         207 TRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQ---G--DHLESSYALVCAGLQADEMALKSGCSLE--PAIVPFR  279 (473)
Q Consensus       207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~---g--~~i~ad~VV~aaG~~s~~l~~~~g~~~~--~~~~p~~  279 (473)
                      +-.....+.++|.++++.++|+++..+++.+.|+..+   |  .+++|+.||||||+|+.++++..+....  ..+.|.|
T Consensus       167 v~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~~~~~~~vr~sk  246 (532)
T COG0578         167 VAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLEQSPHIGVRPSK  246 (532)
T ss_pred             HHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhcccCCCCccceecc
Confidence            9999999999999999999999999998855565433   2  3689999999999999999999876543  2589999


Q ss_pred             eEEEEeCcCcccCcccccccCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchhccc
Q psy7710         280 GEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGL  359 (473)
Q Consensus       280 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (473)
                      |.+++++. ........+++++.+   ..-+++.|.. +..++|.|......      .+.++.                
T Consensus       247 GsHlVv~~-~~~~~~a~~~~~~~d---~r~~f~iP~~-~~~liGTTD~~~~~------~~~~~~----------------  299 (532)
T COG0578         247 GSHLVVDK-KFPINQAVINRCRKD---GRIVFAIPYE-GKTLIGTTDTDYDG------DPEDPR----------------  299 (532)
T ss_pred             ceEEEecc-cCCCCceEEeecCCC---CceEEEecCC-CCEEeeccccccCC------CcccCC----------------
Confidence            99999987 111122233344321   2346888984 55689999654311      111110                


Q ss_pred             hhhhhchHHHHhhhcchhHHHHHh-hcccCCCCCCcccCCCeeceEe
Q psy7710         360 KYTRYGSKEMIMSWFPSMRVNELK-QYIEEIEAGDIQRGPSGVRAQA  405 (473)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~l~~~~i~~~w~G~rp~~  405 (473)
                       -+.++         ++.+++.+. .+-|.+...+|++.|+|+||..
T Consensus       300 -~~~eE---------idyll~~~~~~~~~~l~~~dI~~syaGVRPL~  336 (532)
T COG0578         300 -ITEEE---------IDYLLDAVNRYLAPPLTREDILSTYAGVRPLV  336 (532)
T ss_pred             -CCHHH---------HHHHHHHHHhhhhccCChhheeeeeeeeeecc
Confidence             01111         346667888 5667899999999999999984

>KOG2820|consensus

Probab=99.95  E-value=1.1e-25  Score=200.99  Aligned_cols=346  Identities=16%  Similarity=0.183  Sum_probs=225.0

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCC-CcceEEeeccCCCchhHHHHHHHhHHHHHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGH-NSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFD  134 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (473)
                      +..||+|||||+-|+++||+|+++  |.+++++|+.+.+-...|++ ..-++++.   -++..+..+..++.+.|+++..
T Consensus         6 ~~~~viiVGAGVfG~stAyeLaK~--g~killLeqf~~ph~~GSShg~sRIiR~~---Y~e~~Y~~m~~ea~e~W~~~~~   80 (399)
T KOG2820|consen    6 KSRDVIIVGAGVFGLSTAYELAKR--GDKILLLEQFPLPHSRGSSHGISRIIRPA---YAEDKYMSMVLEAYEKWRNLPE   80 (399)
T ss_pred             cceeEEEEcccccchHHHHHHHhc--CCeEEEEeccCCCcccCcccCcceeechh---hhhHHHHHHHHHHHHHHHhChh
Confidence            578999999999999999999999  89999999986554443333 33333332   2344566788888888888777


Q ss_pred             hcCCCCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCC-cc---cceeEecCCccceeHHHHHHH
Q psy7710         135 KRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPY-CK---GVKAIHSPNTGIVDWGLVTRV  209 (473)
Q Consensus       135 ~~~~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~-~~---~~~~~~~~~~~~~~~~~~~~~  209 (473)
                      +.+..+. .+...+.... +...+......++..++ ..+.++.+++++.+|. ..   ...|+..+.+|++++.+-++.
T Consensus        81 ~~g~~~~-~~t~~~~~~~~e~~~~~sv~~~~k~~~l-~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~  158 (399)
T KOG2820|consen   81 ESGVKLH-CGTGLLISGDPERQRLDSVAANLKRKGL-AHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKA  158 (399)
T ss_pred             hhceeec-ccceeeecCcHHHHHHHHHHHHHhhhhh-hhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHH
Confidence            6665443 3344444444 55667777777777777 6788899999999993 32   367889999999999999999


Q ss_pred             HHHHHHHcCcEEEeCceEEEEEE---cCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHh-cCCCCCCceeeeeeEEEEe
Q psy7710         210 MGEEFCELGGEIRLNQQVESFKE---NPESVTISTKQGDHLESSYALVCAGLQADEMALK-SGCSLEPAIVPFRGEYLLL  285 (473)
Q Consensus       210 l~~~~~~~Gv~i~~~~~V~~i~~---~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~-~g~~~~~~~~p~~g~~~~~  285 (473)
                      ++..+++.|+.++.+..|..+..   ++..+.|+|.+|..+.|+.+|+++|+|...|++. +++.  .|+.|++-..+..
T Consensus       159 ~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~klL~~~~~~~--~Pv~~i~ltvcyw  236 (399)
T KOG2820|consen  159 LQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKLLPTSLAIG--FPVAPIQLTVCYW  236 (399)
T ss_pred             HHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhhcCcccccC--CccceeEeehhhh
Confidence            99999999999999999988874   3457889999997799999999999998888875 4443  4676764333322


Q ss_pred             CcCcccCcccccccCCCCCCCccEEEEecC-CCCeEE-ECCCc-ccc----cc-ccCcccccchhHHHhhhccCCcchhc
Q psy7710         286 NPAKQHLVRGNIYPVPDPNFPFLGVHFTPR-MDGSVW-LGPNA-VLA----FK-KEGYRWRDFSVRELFSTLRYPGFWRL  357 (473)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~g~~~-iG~~~-~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (473)
                      .....    ..++ ...    ...+|+.|. ++..++ .|... ++.    .+ .++.+..+.+++      .++     
T Consensus       237 k~~~~----~~~~-l~~----d~~f~~F~~~~~~~~~~ya~p~~eYpg~~k~~yh~g~~v~~~~~~------~p~-----  296 (399)
T KOG2820|consen  237 KTKKN----MPVY-LFD----DDCFYAFPPYPDTKLIKYALPGYEYPGLMKVDYHEGSKVVPIDPD------GPP-----  296 (399)
T ss_pred             eeecC----Ccee-ecC----CCCceeccCCCCcceEEeccCCCCCcceEEEeecCCCcCCCCCCC------CCc-----
Confidence            21111    1110 000    012333332 333222 22211 110    00 000000111110      000     


Q ss_pred             cchhhhhchHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEeeCCCCccc-------cccceeeeecCCccccc
Q psy7710         358 GLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLV-------DDFGVKAIHSPHTGIVD  430 (473)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d~~p~-------~g~~~~~g~~~~~gi~~  430 (473)
                        .  .....+      ++....-.+++.|.+++........+++  |.|||...+       ++++++.|++||+ .  
T Consensus       297 --~--~s~~~~------idl~~~f~~~~~p~l~~~~p~~t~~C~Y--T~TpD~~FviD~~P~~~Nv~Vg~G~SGHG-F--  361 (399)
T KOG2820|consen  297 --K--RSLPKA------IDLMRRFLRTFGPDLDDRSPINTKMCMY--TDTPDANFVIDKHPQYDNVFVGGGGSGHG-F--  361 (399)
T ss_pred             --c--cCcchH------HHHHHHHHHHhCccccCCCcceeeEEEe--eCCCCcCeeeecCCCcccEEEecCCCCcc-e--
Confidence              0  000100      1122355677889999888888888888  558986654       5778999999985 3  


Q ss_pred             hHHHHHHHHHHHHhhCC
Q psy7710         431 WGLVTRVMGEEFCELGG  447 (473)
Q Consensus       431 ~~~~a~~~g~~~~~~~~  447 (473)
                        ++||.+|+.++++..
T Consensus       362 --K~aP~iGk~lae~~~  376 (399)
T KOG2820|consen  362 --KFAPNIGKYLAEMAM  376 (399)
T ss_pred             --eecchHHHHHHHHhh
Confidence              678888888877733

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=99.94  E-value=4.2e-24  Score=201.12  Aligned_cols=349  Identities=23%  Similarity=0.318  Sum_probs=254.1

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC--CCcceEEeec---cCCCchh-------HHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG--HNSGVVHAGI---YYKPGTL-------KAKLCV  123 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~--~~~g~~~~~~---~~~~~~~-------~~~~~~  123 (473)
                      .++||++|||||+|.++++.|++..|..+|.|+||.+.++..+|.  .|+|..|.+.   .|.|+..       ++.-..
T Consensus         2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~ESS~~wNNAGTGHaa~cElNYTpe~~dGsidi~KA~~In   81 (488)
T PF06039_consen    2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVALESSNAWNNAGTGHAALCELNYTPEKADGSIDISKAVKIN   81 (488)
T ss_pred             CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchhhcCCCccccccchhhhhhccCCCCcCCCcccHHHHHHHH
Confidence            568999999999999999999999999999999999888877664  7888888764   5555422       222223


Q ss_pred             HhH----HHHHHHHHhcCCC-----CcccCeEEEEeCc-ChhhHHHHHHHHHhC-CCCcceee-CHHHHHhhcCCcc---
Q psy7710         124 EGM----NLAYEYFDKRNIP-----YKKCGKLIVALNE-QLEPLHDLYERSIQN-NVKDVRLV-SAEEIKTIEPYCK---  188 (473)
Q Consensus       124 ~~~----~~~~~~~~~~~~~-----~~~~g~l~~~~~~-~~~~~~~~~~~~~~~-g~~~~~~l-~~~~~~~~~p~~~---  188 (473)
                      +.+    +.|..+.++--+.     .+...++.+...+ +.+.+++.++.++++ -+..+++. +.+++.++.|...   
T Consensus        82 eqFevsrqfWs~lv~~g~l~~p~~FI~~~PHmsfv~Ge~~v~fLkkR~~~l~~~~lF~~Me~sed~~~i~~w~PLvm~gR  161 (488)
T PF06039_consen   82 EQFEVSRQFWSYLVENGILQNPESFINPVPHMSFVWGEENVDFLKKRYEALKEHPLFPGMEFSEDPEQIAEWAPLVMEGR  161 (488)
T ss_pred             HHHHHHHHHHHHHHHCCCCCChHHhccCCCceEEEEChHhHHHHHHHHHHHhcCCCCCCcEEccCHHHHHhhCCeecCCC
Confidence            333    3344444332221     3567888888888 899999999998874 34467776 5788899988753   


Q ss_pred             ----cceeEecCCccceeHHHHHHHHHHHHHHc-CcEEEeCceEEEEEEcCCe-EEEEcC-----CCcEEEcCEEEEcCC
Q psy7710         189 ----GVKAIHSPNTGIVDWGLVTRVMGEEFCEL-GGEIRLNQQVESFKENPES-VTISTK-----QGDHLESSYALVCAG  257 (473)
Q Consensus       189 ----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~-v~v~~~-----~g~~i~ad~VV~aaG  257 (473)
                          .+.+.+.+.+..+|...+++.|.+.+++. |++++++++|++|.+.+++ |.|++.     +..+++|+.|++++|
T Consensus       162 ~~~e~vAat~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAG  241 (488)
T PF06039_consen  162 DPSEPVAATRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAG  241 (488)
T ss_pred             CCCCceeeeecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCc
Confidence                26678888888899999999999999987 9999999999999988765 877642     225899999999999


Q ss_pred             cChHHHHHhcCCCC--CCceeeeeeEEEEeCcCcc-cCcccccccCCCCCCCccEE-EEecC-CCC--eEEECCCccccc
Q psy7710         258 LQADEMALKSGCSL--EPAIVPFRGEYLLLNPAKQ-HLVRGNIYPVPDPNFPFLGV-HFTPR-MDG--SVWLGPNAVLAF  330 (473)
Q Consensus       258 ~~s~~l~~~~g~~~--~~~~~p~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~p~-~~g--~~~iG~~~~~~~  330 (473)
                      ++|..|++.+||+.  .....|+.||.+.+..+.. ......+|....+..|...+ |+-+| -+|  .+++|+++.+.+
T Consensus       242 G~aL~LLqksgi~e~~gyggfPVsG~fl~~~n~~vv~~H~aKVYgka~vGaPPmSvPHlDtRiidGk~~llFGP~Agfs~  321 (488)
T PF06039_consen  242 GGALPLLQKSGIPEGKGYGGFPVSGQFLRCKNPEVVAQHNAKVYGKASVGAPPMSVPHLDTRIIDGKKSLLFGPFAGFSP  321 (488)
T ss_pred             hHhHHHHHHcCChhhcccCCCcccceEEecCCHHHHHHhcceeeeeCCCCCCCccCccCCchhcCCCcceeecCccccch
Confidence            99999999999853  4567899999999986532 12244566554443222222 55555 233  478999998775


Q ss_pred             cccCcccccchhHHHhhhccCCcchhcc---chh---hhhchHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceE
Q psy7710         331 KKEGYRWRDFSVRELFSTLRYPGFWRLG---LKY---TRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQ  404 (473)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~  404 (473)
                      +..-    ..+.-|++.++...++..|+   ++|   +++-+.+++.  ..+..++.+++++|.++..++.-..+|.|++
T Consensus       322 KfLK----~GS~~Dl~~S~~~~N~~~ml~~~~~n~~L~kYLi~q~~~--s~~~r~~~Lr~f~P~a~~~DW~l~~AGqRvQ  395 (488)
T PF06039_consen  322 KFLK----NGSYLDLFKSLRPDNLFPMLAVGLDNFDLTKYLIGQVLQ--SKEDRMEALRKFYPSAKPEDWELITAGQRVQ  395 (488)
T ss_pred             HHhc----CCcHHHHHhhcCcccHHHHHHHHhhhhhHHHHHHHhhcc--CHHHHHHHHHHhCccCChhceEEEecCceee
Confidence            4321    12455677777777776665   233   2333333331  1245679999999999999998889999999


Q ss_pred             eeCCCC
Q psy7710         405 ALSSSG  410 (473)
Q Consensus       405 ~~t~d~  410 (473)
                      ...+|.
T Consensus       396 iIkk~~  401 (488)
T PF06039_consen  396 IIKKDE  401 (488)
T ss_pred             EEecCC
Confidence            888774

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>KOG3923|consensus

Probab=99.89  E-value=1.6e-21  Score=171.36  Aligned_cols=277  Identities=18%  Similarity=0.198  Sum_probs=181.5

Q ss_pred             CcccEEEEcCChHHHHHHHHHHh-----cCCCCeEEEEeccCcccCcccCCCcceEEeeccCC-CchhHHHHHHHhHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKL-----NYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYK-PGTLKAKLCVEGMNLA  129 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~-----~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~  129 (473)
                      +..+|+|||+|++||++|+.+.+     .-|-.+|+|++-. ..-.-+|...+|++.+..... +.....++....++.+
T Consensus         2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr-f~e~T~s~~~AGl~~p~~~~~~~~~~~~~w~k~tf~~l   80 (342)
T KOG3923|consen    2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR-FTEDTTSDVAAGLFRPDLSDGTPQEINRQWGKDTFNYL   80 (342)
T ss_pred             CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC-CccccccccccceeecccCCCCcHHHHHHHHHHHHHHH
Confidence            35789999999999999988877     3345799999876 445566777888887764332 3334567888888888


Q ss_pred             HHHHHhc--CC-CC-cccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHH
Q psy7710         130 YEYFDKR--NI-PY-KKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGL  205 (473)
Q Consensus       130 ~~~~~~~--~~-~~-~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  205 (473)
                      ..+....  +. .. .-.|...... +   .+.+........-. .++.++..++. .+|.....+-.+  .....++..
T Consensus        81 ~~l~rs~~a~~aGV~l~sg~~ls~~-e---~~~~~~~~w~diV~-~fr~l~e~EL~-~f~~~~~~G~~~--Tt~~sE~~~  152 (342)
T KOG3923|consen   81 AHLARSEEAGEAGVCLVSGHILSDS-E---SLDDQQRSWGDIVY-GFRDLTERELL-GFPDYSTYGIHF--TTYLSEGPK  152 (342)
T ss_pred             HHHhccccccccceEEeeeeeeccC-C---CchhhhhhHHhhhh-hhhcCCHHHhc-CCCCccccceeE--EEeeccchh
Confidence            8877622  11 11 1223332221 2   11111111111112 56777887776 555442222211  122456788


Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEe
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLL  285 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~  285 (473)
                      |+..|.+.+.++|+++. ..+|+++.+-.           .-.+|.||+|+|.|+..|+.      |..++|+|||++.+
T Consensus       153 ylpyl~k~l~e~Gvef~-~r~v~~l~E~~-----------~~~~DVivNCtGL~a~~L~g------Dd~~yPiRGqVl~V  214 (342)
T KOG3923|consen  153 YLPYLKKRLTENGVEFV-QRRVESLEEVA-----------RPEYDVIVNCTGLGAGKLAG------DDDLYPIRGQVLKV  214 (342)
T ss_pred             hhHHHHHHHHhcCcEEE-EeeeccHHHhc-----------cCCCcEEEECCccccccccC------CcceeeccceEEEe
Confidence            99999999999999985 56777665421           13479999999999987764      34599999999999


Q ss_pred             CcCcccCcccccccCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhhc
Q psy7710         286 NPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYG  365 (473)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (473)
                      +.+-   +++.+|.  +    +...|++|- .+.+.+|++.+..    +|+.. ....                     .
T Consensus       215 ~ApW---vkhf~~~--D----~~~ty~iP~-~~~V~lGg~~Q~g----~w~~e-i~~~---------------------D  258 (342)
T KOG3923|consen  215 DAPW---VKHFIYR--D----FSRTYIIPG-TESVTLGGTKQEG----NWNLE-ITDE---------------------D  258 (342)
T ss_pred             eCCc---eeEEEEe--c----CCccEEecC-CceEEEccccccC----cccCc-CChh---------------------h
Confidence            8763   3444443  1    122588886 5678999998753    23221 1111                     1


Q ss_pred             hHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceE
Q psy7710         366 SKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQ  404 (473)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~  404 (473)
                               ..++++++.++.|.|+.+++++.|+|+||.
T Consensus       259 ---------~~dIl~rc~aL~P~l~~a~ii~E~vGlRP~  288 (342)
T KOG3923|consen  259 ---------RRDILERCCALEPSLRHAEIIREWVGLRPG  288 (342)
T ss_pred             ---------HHHHHHHHHHhCcccccceehhhhhcccCC
Confidence                     346779999999999999999999999996

>KOG0042|consensus

Probab=99.88  E-value=1.8e-22  Score=190.50  Aligned_cols=303  Identities=19%  Similarity=0.252  Sum_probs=200.8

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHH----
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYE----  131 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----  131 (473)
                      .++||+|||||.+|.-+|+..+.+  |+||.++|++ .+++|+|+.+.-++|.|..|....+ .++.+..+++.++    
T Consensus        66 ~~fDVLIIGGGAtGaGcALDA~TR--GLktaLVE~~-DF~SGTSSkSTKLiHGGVRYLekAi-~~lD~~qyrlV~eaL~E  141 (680)
T KOG0042|consen   66 HEFDVLIIGGGATGAGCALDAATR--GLKTALVEAG-DFASGTSSKSTKLIHGGVRYLEKAI-SNLDYEQYRLVKEALNE  141 (680)
T ss_pred             CcccEEEECCCccCcceeehhhcc--cceeEEEecc-cccCCccccchhhhcccHHHHHHHH-HhcCHHHHHHHHHHHHH
Confidence            469999999999999999999999  9999999999 7999999999999999976644322 2222333333222    


Q ss_pred             ---HHHhc-------CC--C---CcccCeEEEEeCcChhhHHHHHHHHH-hCCCCcceeeCHHHHHhhcCCccc--ceeE
Q psy7710         132 ---YFDKR-------NI--P---YKKCGKLIVALNEQLEPLHDLYERSI-QNNVKDVRLVSAEEIKTIEPYCKG--VKAI  193 (473)
Q Consensus       132 ---~~~~~-------~~--~---~~~~g~l~~~~~~~~~~~~~~~~~~~-~~g~~~~~~l~~~~~~~~~p~~~~--~~~~  193 (473)
                         +.+..       .+  +   |.+..+++..-.-        +.... ...+....++++++..+.+|.+..  ..|.
T Consensus       142 R~~lle~APhLs~~lPImlPvy~wwQvpYyw~G~K~--------YD~vAG~k~Lk~S~~lSk~~alE~fPmL~~~~L~Ga  213 (680)
T KOG0042|consen  142 RANLLEIAPHLSQPLPIMLPVYKWWQVPYYWVGLKI--------YDLVAGSKNLKSSYFLSKKEALEIFPMLRKDNLKGA  213 (680)
T ss_pred             HHHHhhcCccccCCcceeeehhhhhhhhheeeccee--------eeeeccccccccceeecHHHHHHhCccccccCceeE
Confidence               22211       10  0   1111122111100        00110 111224678899999999999875  5565


Q ss_pred             ecCCccceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCe-E-EEE-----cCCCcEEEcCEEEEcCCcChHHHHHh
Q psy7710         194 HSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPES-V-TIS-----TKQGDHLESSYALVCAGLQADEMALK  266 (473)
Q Consensus       194 ~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-v-~v~-----~~~g~~i~ad~VV~aaG~~s~~l~~~  266 (473)
                      ....+|+.|-.++.-.++-.+.++|+.+....+|.++..++++ + .++     |...-.++|+.||+|||.+++.+.++
T Consensus       214 ~VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr~M  293 (680)
T KOG0042|consen  214 MVYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIRKM  293 (680)
T ss_pred             EEEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHHhh
Confidence            6666788888889988988899999999999999999877643 2 222     33334688999999999999999998


Q ss_pred             cCCCCCCceeeeeeEEEEeCcCcccCcccccccCCCCCCC-ccEEEEecCCCCeEEECCCccccccccCcccccchhHHH
Q psy7710         267 SGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFP-FLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVREL  345 (473)
Q Consensus       267 ~g~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~  345 (473)
                      -.-...+-+.|..|.+++++..-...-.    .+.++..+ ..-+++.|. .|..+.|.|..+..    ...   +|.  
T Consensus       294 dd~~~~~i~~pSsGvHIVlP~yY~P~~m----GlldP~TsDgRViFflPW-qg~TIaGTTD~pt~----v~~---~P~--  359 (680)
T KOG0042|consen  294 DDEDAKPICVPSSGVHIVLPGYYCPENM----GLLDPKTSDGRVIFFLPW-QGKTIAGTTDIPTS----VTH---SPT--  359 (680)
T ss_pred             cccccCceeccCCceeEEcccccCCccc----ccccCCCCCCcEEEEecc-CCceeeccCCCCCC----CCC---CCC--
Confidence            7655445578999999998643211001    11222221 123577787 68888999865321    110   110  


Q ss_pred             hhhccCCcchhccchhhhhchHHHHhhhcchhHHHHHhhccc---CCCCCCcccCCCeeceEeeCC
Q psy7710         346 FSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIE---EIEAGDIQRGPSGVRAQALSS  408 (473)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P---~l~~~~i~~~w~G~rp~~~t~  408 (473)
                                     .+..+         ++.+++.++.++-   .++..+|.+.|+|+||...+|
T Consensus       360 ---------------PtE~d---------IqfIL~ev~~yl~~~~~VrR~DVlsaWsGiRPLv~DP  401 (680)
T KOG0042|consen  360 ---------------PTEDD---------IQFILKEVQHYLSFDVEVRREDVLSAWSGIRPLVRDP  401 (680)
T ss_pred             ---------------CCHHH---------HHHHHHHHHHhhCCCcccchhhhHHHhhCCcccccCC
Confidence                           01112         3456688888873   478889999999999997777

>KOG2852|consensus

Probab=99.88  E-value=6.6e-21  Score=166.54  Aligned_cols=325  Identities=17%  Similarity=0.146  Sum_probs=199.1

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCC------CeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPK------MKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLA  129 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G------~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  129 (473)
                      ...+|+|||||++|.++||+|++.  +      ..|+|+|+. .+++++|+.++|++..-.  .+ +....+...++++.
T Consensus         9 nsk~I~IvGGGIiGvctayyLt~~--~sf~~~~~~ItifEs~-~IA~gaSGkasgfLa~wc--~~-s~~~~La~lsfkLh   82 (380)
T KOG2852|consen    9 NSKKIVIVGGGIIGVCTAYYLTEH--PSFKKGELDITIFESK-EIAGGASGKASGFLAKWC--QP-SIIQPLATLSFKLH   82 (380)
T ss_pred             CceEEEEECCCceeeeeehhhhcC--CccCCCceeEEEEeec-ccccccccccchhhHhhh--CC-cccchhhHHHHHHH
Confidence            457899999999999999999988  4      789999998 899999999999886211  22 22345677788888


Q ss_pred             HHHHHhcC----CCCcccCeEEEEeC-c--ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCcccee
Q psy7710         130 YEYFDKRN----IPYKKCGKLIVALN-E--QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVD  202 (473)
Q Consensus       130 ~~~~~~~~----~~~~~~g~l~~~~~-~--~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~  202 (473)
                      +++.++++    .+|+.-..+.+..+ +  +....          .. ..+|+.++.......    ++  -....++++
T Consensus        83 ~~LsdeydGvnnwgYRaltTws~ka~~en~~p~k~----------pe-gldWi~~e~v~~~ss----iG--~t~ttaqvh  145 (380)
T KOG2852|consen   83 EELSDEYDGVNNWGYRALTTWSCKADWENTNPAKV----------PE-GLDWIQRERVQKCSS----IG--STNTTAQVH  145 (380)
T ss_pred             HHHHHhhcCcccccceeeeEEEEEeecccCCcccC----------Cc-chhhhhhHHhhhhee----cc--CCCccceeC
Confidence            88888875    23444444433322 1  11100          11 234444433322211    01  123456899


Q ss_pred             HHHHHHHHHHHHHHcC-cEEEeCceEEEEEEcCCeEE-EEc---CC-CcEEEcCEEEEcCCcChHHHHHhcCCCCCCcee
Q psy7710         203 WGLVTRVMGEEFCELG-GEIRLNQQVESFKENPESVT-IST---KQ-GDHLESSYALVCAGLQADEMALKSGCSLEPAIV  276 (473)
Q Consensus       203 ~~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~v~-v~~---~~-g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~  276 (473)
                      |+.|++.+.+.+++.| |+++++ +|.++..+..++. +-.   .+ .....++.+|+++|.|+..|+...      ++.
T Consensus       146 P~lFc~~i~sea~k~~~V~lv~G-kv~ev~dEk~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTskllp~~------rIs  218 (380)
T KOG2852|consen  146 PYLFCHFILSEAEKRGGVKLVFG-KVKEVSDEKHRINSVPKAEAEDTIIKADVHKIVVSAGPWTSKLLPFT------RIS  218 (380)
T ss_pred             HHHHHHHHHHHHHhhcCeEEEEe-eeEEeecccccccccchhhhcCceEEeeeeEEEEecCCCchhhcccc------ccc
Confidence            9999999999998876 888876 4667753333322 211   11 234567889999999998888643      556


Q ss_pred             eeeeEEEEeCcCcccCccccccc---CCCC-CCCccEEEEecCCCC-eEEECCCccccccccCcccccchhHHHhhhccC
Q psy7710         277 PFRGEYLLLNPAKQHLVRGNIYP---VPDP-NFPFLGVHFTPRMDG-SVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRY  351 (473)
Q Consensus       277 p~~g~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~p~~~g-~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (473)
                      ..|-..+.+++.....-.+.++.   ..+. .....-+|.++  ++ .++.|.+..+..-+++.+.-..++         
T Consensus       219 glrihsI~l~~~e~~v~~~avf~~l~~~~g~ei~~pe~y~rk--d~Evyicg~~~~e~~lPedsd~v~~np---------  287 (380)
T KOG2852|consen  219 GLRIHSITLSPGEKPVGPSAVFCELNTMDGLEICKPEEYARK--DREVYICGETDKEHLLPEDSDDVFVNP---------  287 (380)
T ss_pred             eeeeeeEEecCCCCCCCCceEEEEEEeCCCccccCcceeecC--CceEEEecCCCccccCCcccccceeCH---------
Confidence            67777888877654322222221   1111 11112457665  44 455676644321122111000111         


Q ss_pred             CcchhccchhhhhchHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEeeCCC-Cccc-----cccceeeeecCC
Q psy7710         352 PGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSS-GDLV-----DDFGVKAIHSPH  425 (473)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d-~~p~-----~g~~~~~g~~~~  425 (473)
                                  +..         ..+.+-+..+.+.+....+...-+.+-|.  +.+ |.|+     -|+|+++||+..
T Consensus       288 ------------eki---------~~Lk~~a~~v~s~l~ks~v~~~qacfLP~--sn~tg~PvIget~sg~yVaagHscW  344 (380)
T KOG2852|consen  288 ------------EKI---------IELKEMADLVSSELTKSNVLDAQACFLPT--SNITGIPVIGETKSGVYVAAGHSCW  344 (380)
T ss_pred             ------------HHH---------HHHHHHHHHhhhhhccchhhhhhhccccc--cCCCCCceEeecCCceEEeeccccc
Confidence                        112         22234455555677888899999999987  455 8887     388999999887


Q ss_pred             ccccchHHHHHHHHHHHHhh
Q psy7710         426 TGIVDWGLVTRVMGEEFCEL  445 (473)
Q Consensus       426 ~gi~~~~~~a~~~g~~~~~~  445 (473)
                       ||.++|.++..|+++|.++
T Consensus       345 -GItnaPaTG~~mAEllldg  363 (380)
T KOG2852|consen  345 -GITNAPATGKCMAELLLDG  363 (380)
T ss_pred             -ceecCcchhHHHHHHHhcc
Confidence             5777777777777776655

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.69  E-value=8.4e-16  Score=142.57  Aligned_cols=166  Identities=18%  Similarity=0.258  Sum_probs=107.5

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCc--------ccCCCcceEEeeccCCC---chhHHHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMH--------QTGHNSGVVHAGIYYKP---GTLKAKLCVE  124 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~--------~s~~~~g~~~~~~~~~~---~~~~~~~~~~  124 (473)
                      +.+||+|||||++|+.||..++++  |.+|+|||+.+.+|--        +...|......-....|   ..++..+...
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~~--G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~f   79 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAKA--GRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARF   79 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhhc--CCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhC
Confidence            468999999999999999999999  9999999999877622        11111111000000011   1111112222


Q ss_pred             hHHHHHHHHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHH
Q psy7710         125 GMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWG  204 (473)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  204 (473)
                      ..+.                               ++.+...+|+ ....-+             .+-+| |.  .-...
T Consensus        80 t~~d-------------------------------~i~~~e~~Gi-~~~e~~-------------~Gr~F-p~--sdkA~  111 (408)
T COG2081          80 TPED-------------------------------FIDWVEGLGI-ALKEED-------------LGRMF-PD--SDKAS  111 (408)
T ss_pred             CHHH-------------------------------HHHHHHhcCC-eeEEcc-------------Cceec-CC--ccchH
Confidence            2222                               2333333443 111100             00111 11  01135


Q ss_pred             HHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh----------HHHHHhcCCCC
Q psy7710         205 LVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA----------DEMALKSGCSL  271 (473)
Q Consensus       205 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s----------~~l~~~~g~~~  271 (473)
                      .+++.|.+++++.||+|+++++|.++..++....+.+++|.+++||.+|+|+|+.|          -.++++.|+++
T Consensus       112 ~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~~I  188 (408)
T COG2081         112 PIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGKSWPKLGSTGFGYPIARQFGHTI  188 (408)
T ss_pred             HHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEEecCCcCCCCCCCCchhhHHHHHcCCcc
Confidence            68899999999999999999999999999988999999998899999999999653          26888888764

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.61  E-value=1.1e-14  Score=141.34  Aligned_cols=163  Identities=23%  Similarity=0.316  Sum_probs=88.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCc--ccCCCcceEEee-----------ccCCCchhHHHHHHH
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMH--QTGHNSGVVHAG-----------IYYKPGTLKAKLCVE  124 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~--~s~~~~g~~~~~-----------~~~~~~~~~~~~~~~  124 (473)
                      |||+|||||++|+.||+.|++.  |.+|+|+||++.+|..  .|+ ++.+-...           +...+..+...+...
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~--g~~V~vlE~~~~~gkKil~tG-~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f   77 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEK--GARVLVLERNKRVGKKILITG-NGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRF   77 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHT--T--EEEE-SSSSS-HHHHHCG-GGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS
T ss_pred             CcEEEECCCHHHHHHHHHHHhC--CCCEEEEeCCcccccceeecC-CCCccccccccchhhHhhhcccchHHHHHHHhcC
Confidence            6999999999999999999999  9999999999777522  111 11111111           000112222223322


Q ss_pred             hHHHHHHHHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHH
Q psy7710         125 GMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWG  204 (473)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  204 (473)
                      ..+...                               +.+.+.|+ ....-.              .+-.+|..  -...
T Consensus        78 ~~~d~~-------------------------------~ff~~~Gv-~~~~~~--------------~gr~fP~s--~~a~  109 (409)
T PF03486_consen   78 SPEDLI-------------------------------AFFEELGV-PTKIEE--------------DGRVFPKS--DKAS  109 (409)
T ss_dssp             -HHHHH-------------------------------HHHHHTT---EEE-S--------------TTEEEETT----HH
T ss_pred             CHHHHH-------------------------------HHHHhcCC-eEEEcC--------------CCEECCCC--CcHH
Confidence            323333                               33334444 111100              00111111  1346


Q ss_pred             HHHHHHHHHHHHcCcEEEeCceEEEEEEcCCe-EEEEcCCCcEEEcCEEEEcCCcCh----------HHHHHhcCCCC
Q psy7710         205 LVTRVMGEEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQA----------DEMALKSGCSL  271 (473)
Q Consensus       205 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-v~v~~~~g~~i~ad~VV~aaG~~s----------~~l~~~~g~~~  271 (473)
                      .+.+.|.+.+++.|++|+++++|.+|..++++ +.|+++++..+.||.||+|+|+.|          -.+++.+|+.+
T Consensus       110 ~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtGG~S~p~~GS~G~gy~~a~~lGh~i  187 (409)
T PF03486_consen  110 SVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATGGKSYPKTGSDGSGYRIAKKLGHTI  187 (409)
T ss_dssp             HHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE----SSSGGGT-SSHHHHHHHHTT--E
T ss_pred             HHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecCCCCccccCCCcHHHHHHHHCCCcE
Confidence            68889999999999999999999999987766 889995556999999999999754          46889998764

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.59  E-value=5.1e-13  Score=126.43  Aligned_cols=162  Identities=14%  Similarity=0.071  Sum_probs=97.7

Q ss_pred             ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcC-CCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeee
Q psy7710         200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTK-QGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPF  278 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~-~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~  278 (473)
                      .++...+.+.|.+.+++.|++++++++|+++..+++++.+... ++.++++|.||.|+|.++ .+.+.+|+... +....
T Consensus        87 ~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s-~~~~~~~~~~~-~~~~~  164 (295)
T TIGR02032        87 VIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS-IVAKKLGLRKE-PRELG  164 (295)
T ss_pred             EEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch-HHHHhcCCCCC-Cccee
Confidence            4667788899999999999999999999999888777665433 334899999999999997 47777776532 11222


Q ss_pred             eeEEEEeCcCccc-Ccc-cccccCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchh
Q psy7710         279 RGEYLLLNPAKQH-LVR-GNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWR  356 (473)
Q Consensus       279 ~g~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (473)
                      .+....+..+... ... ..++..... .+....|+.|..++++.+|-+....    .   ...+               
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~~~~~~~v~~~~~~~----~---~~~~---------------  221 (295)
T TIGR02032       165 VAARAEVEMPDEEVDEDFVEVYIDRGI-SPGGYGWVFPKGDGTANVGVGSRSA----E---EGED---------------  221 (295)
T ss_pred             eEEEEEEecCCcccCcceEEEEcCCCc-CCCceEEEEeCCCCeEEEeeeeccC----C---CCCC---------------
Confidence            2332233222100 000 001110000 0112368889888878787542210    0   0001               


Q ss_pred             ccchhhhhchHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceE
Q psy7710         357 LGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQ  404 (473)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~  404 (473)
                               .         +..++...+.+|.+...++.+.+.+..|+
T Consensus       222 ---------~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  251 (295)
T TIGR02032       222 ---------L---------KKYLKDFLARRPELKDAETVEVIGAPIPI  251 (295)
T ss_pred             ---------H---------HHHHHHHHHhCcccccCcEEeeeceeecc
Confidence                     1         12235566667888888888877777765

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.57  E-value=1.4e-13  Score=135.64  Aligned_cols=86  Identities=16%  Similarity=0.283  Sum_probs=69.4

Q ss_pred             ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeee
Q psy7710         200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFR  279 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~  279 (473)
                      .++...+.+.|.+.+++.|++++++++|+++..+++++.|++.+|.+++||.||.|+|.+| .+.+.+|++....-++.+
T Consensus       109 ~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S-~vr~~~g~~~~~~~~~~~  187 (392)
T PRK08773        109 IVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIAADGAAS-TLRELAGLPVSRHDYAQR  187 (392)
T ss_pred             EEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEEecCCCc-hHHHhhcCCceEEEeccE
Confidence            3566778889999999999999999999999988888888888777899999999999999 688888876422224456


Q ss_pred             eEEEEeC
Q psy7710         280 GEYLLLN  286 (473)
Q Consensus       280 g~~~~~~  286 (473)
                      +++..++
T Consensus       188 ~~~~~v~  194 (392)
T PRK08773        188 GVVAFVD  194 (392)
T ss_pred             EEEEEEE
Confidence            6665544

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.54  E-value=1.2e-12  Score=129.62  Aligned_cols=86  Identities=17%  Similarity=0.221  Sum_probs=69.1

Q ss_pred             ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeee
Q psy7710         200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFR  279 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~  279 (473)
                      .++...+.+.|.+.+.+.|++++++++|+++..+++.+.|++.+|.+++||.||.|+|.+|. +.+.+|++.....++..
T Consensus       107 ~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~AdG~~S~-vr~~~g~~~~~~~~~~~  185 (403)
T PRK07333        107 MVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVAADGARSK-LRELAGIKTVGWDYGQS  185 (403)
T ss_pred             EeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEEcCCCChH-HHHHcCCCcccccCCCE
Confidence            46778899999999999999999999999999888888888888878999999999999984 78888876422233445


Q ss_pred             eEEEEeC
Q psy7710         280 GEYLLLN  286 (473)
Q Consensus       280 g~~~~~~  286 (473)
                      +.++.+.
T Consensus       186 ~~~~~~~  192 (403)
T PRK07333        186 GIVCTVE  192 (403)
T ss_pred             EEEEEEE
Confidence            5555443

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.54  E-value=5.2e-13  Score=131.31  Aligned_cols=211  Identities=21%  Similarity=0.224  Sum_probs=121.0

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK  135 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (473)
                      .++||+|||||++|++||+.|+++  |++|+|+||.+.+|...-+  ++.+.+.      .+                ++
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~--G~~VlvlEk~~~~G~k~~~--~~~~~~~------~l----------------~~   55 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKA--GLDVLVLEKGSEPGAKPCC--GGGLSPR------AL----------------EE   55 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHc--CCeEEEEecCCCCCCCccc--cceechh------hH----------------HH
Confidence            469999999999999999999999  8999999998777643222  1222111      00                00


Q ss_pred             cCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEec--CCccceeHHHHHHHHHHH
Q psy7710         136 RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHS--PNTGIVDWGLVTRVMGEE  213 (473)
Q Consensus       136 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~--~~~~~~~~~~~~~~l~~~  213 (473)
                      +..++...                 +    ...+....+..        +  .....+..  +....++-..+.++|++.
T Consensus        56 l~~~~~~~-----------------i----~~~v~~~~~~~--------~--~~~~~~~~~~~~~y~v~R~~fd~~La~~  104 (396)
T COG0644          56 LIPDFDEE-----------------I----ERKVTGARIYF--------P--GEKVAIEVPVGEGYIVDRAKFDKWLAER  104 (396)
T ss_pred             hCCCcchh-----------------h----heeeeeeEEEe--------c--CCceEEecCCCceEEEEhHHhhHHHHHH
Confidence            00000000                 0    00000000000        0  00001111  223356778899999999


Q ss_pred             HHHcCcEEEeCceEEEEEEcCCeEEEE-cCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcCcccC
Q psy7710         214 FCELGGEIRLNQQVESFKENPESVTIS-TKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHL  292 (473)
Q Consensus       214 ~~~~Gv~i~~~~~V~~i~~~~~~v~v~-~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~~~  292 (473)
                      +++.|++++.+++|..+..+++++.+. ..++.+++|+.||.|+|..+ .+.+.+|+....+-.-.-++.-.+..+....
T Consensus       105 A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s-~l~~~lg~~~~~~~~~~~~~~e~~~~~~~~~  183 (396)
T COG0644         105 AEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS-ALARKLGLKDRKPEDYAIGVKEVIEVPDDGD  183 (396)
T ss_pred             HHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcch-HHHHHhCCCCCChhheeEEeEEEEecCCCCc
Confidence            999999999999999999888665433 33336899999999999987 6778888761111111122222222221111


Q ss_pred             cccccccCCCCCCCccEEEEecCCCCeEEECCC
Q psy7710         293 VRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPN  325 (473)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~  325 (473)
                      .....+ .+....+..+.++.|..++.+.+|-.
T Consensus       184 ~~~~~~-~~~~~~~~Gy~wifP~~~~~~~VG~g  215 (396)
T COG0644         184 VEEFLY-GPLDVGPGGYGWIFPLGDGHANVGIG  215 (396)
T ss_pred             eEEEEe-cCCccCCCceEEEEECCCceEEEEEE
Confidence            111111 11112223356888998887777764

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=99.51  E-value=1e-12  Score=129.46  Aligned_cols=70  Identities=14%  Similarity=0.208  Sum_probs=60.4

Q ss_pred             ceeHHHHHHHHHHHHHHcC-cEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710         200 IVDWGLVTRVMGEEFCELG-GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSL  271 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~  271 (473)
                      .++...+.+.|.+.+++.| ++++ +++|+++..+++.+.|++.+|.+++||.||.|+|.+|. +.+.+|+..
T Consensus       107 ~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~adG~~S~-vr~~~~~~~  177 (388)
T PRK07608        107 IVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVLRADLVVGADGAHSW-VRSQAGIKA  177 (388)
T ss_pred             EEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEEEeeEEEEeCCCCch-HHHhcCCCc
Confidence            4667888999999998887 9998 99999998888888888888878999999999999985 788888764

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=99.49  E-value=6.8e-12  Score=122.27  Aligned_cols=118  Identities=17%  Similarity=0.141  Sum_probs=80.1

Q ss_pred             ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeee
Q psy7710         200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFR  279 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~  279 (473)
                      .++...+-+.+.+.+. .+..++.++.|++|...++.+.|++.+|.+++|+.||.|.|..+. ...      ....+-..
T Consensus        83 ~i~~~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~-~~~------~~~~Q~f~  154 (374)
T PF05834_consen   83 MIDRADFYEFLLERAA-AGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP-KAR------PLGLQHFY  154 (374)
T ss_pred             EEEHHHHHHHHHHHhh-hCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc-ccc------ccccceeE
Confidence            5677888888999988 455667899999999998888888999889999999999996553 111      12344567


Q ss_pred             eEEEEeCcCcccCcc-cc-cccCCCCCCCccEEEEecCCCCeEEECCC
Q psy7710         280 GEYLLLNPAKQHLVR-GN-IYPVPDPNFPFLGVHFTPRMDGSVWLGPN  325 (473)
Q Consensus       280 g~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~p~~~g~~~iG~~  325 (473)
                      |..+.++.+.-..-. .. -+..+....+...+|+.|..+++.++..|
T Consensus       155 G~~v~~~~~~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T  202 (374)
T PF05834_consen  155 GWEVETDEPVFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEET  202 (374)
T ss_pred             EEEEeccCCCCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEE
Confidence            777777655211100 10 11222220122356999998899888876

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.49  E-value=2.8e-12  Score=129.85  Aligned_cols=193  Identities=18%  Similarity=0.146  Sum_probs=105.7

Q ss_pred             CCCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHH-HHHhH-HHHHH
Q psy7710          54 SPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKL-CVEGM-NLAYE  131 (473)
Q Consensus        54 ~~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~-~~~~~-~~~~~  131 (473)
                      ++.++||||||+|++|+++|++++++  |.+|+||||.+..| ++|..+.|.+...    ........ ...+. +.+.+
T Consensus        58 ~~~~~DVvVVG~G~AGl~AAi~Aa~~--Ga~VivlEK~~~~G-G~s~~s~Gg~~~~----~~~~~~~~g~~d~~~~~~~~  130 (506)
T PRK06481         58 LKDKYDIVIVGAGGAGMSAAIEAKDA--GMNPVILEKMPVAG-GNTMKASSGMNAS----ETKFQKAQGIADSNDKFYEE  130 (506)
T ss_pred             ccccCCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCCCCC-CcccccCCccccC----ChHHHHhcCCCCCHHHHHHH
Confidence            34578999999999999999999999  99999999996544 4444444433211    00000000 00001 11222


Q ss_pred             HHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHH
Q psy7710         132 YFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMG  211 (473)
Q Consensus       132 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~  211 (473)
                      +.+. +........+..    -.+...+.++++.+.|+ .+..+..       +........+.|.++......++..|.
T Consensus       131 ~~~~-~~~~~d~~l~~~----~~~~s~~~i~wl~~~Gv-~~~~~~~-------~~g~~~~r~~~p~~g~~~g~~l~~~L~  197 (506)
T PRK06481        131 TLKG-GGGTNDKALLRY----FVDNSASAIDWLDSMGI-KLDNLTI-------TGGMSEKRTHRPHDGSAVGGYLVDGLL  197 (506)
T ss_pred             HHHh-cCCCCCHHHHHH----HHhccHHHHHHHHHcCc-eEeeccc-------CCCCCCCceeccCCCCCChHHHHHHHH
Confidence            2111 000000000000    00111233445555555 2221100       000001122334444444567888999


Q ss_pred             HHHHHcCcEEEeCceEEEEEEcCCeE---EEEcCCC--cEEEcCEEEEcCCcCh--HHHHHh
Q psy7710         212 EEFCELGGEIRLNQQVESFKENPESV---TISTKQG--DHLESSYALVCAGLQA--DEMALK  266 (473)
Q Consensus       212 ~~~~~~Gv~i~~~~~V~~i~~~~~~v---~v~~~~g--~~i~ad~VV~aaG~~s--~~l~~~  266 (473)
                      +.+++.|++++++++|++|..+++++   .+...++  .+++||.||+|+|+++  .++++.
T Consensus       198 ~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~~~  259 (506)
T PRK06481        198 KNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMIAK  259 (506)
T ss_pred             HHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHHHH
Confidence            99999999999999999998766643   3444443  3689999999999884  345544

>PLN02463 lycopene beta cyclase

Probab=99.47  E-value=3.2e-11  Score=119.21  Aligned_cols=61  Identities=15%  Similarity=0.168  Sum_probs=53.8

Q ss_pred             ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChH
Q psy7710         200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD  261 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~  261 (473)
                      .++...+.+.|.+.+.+.|++++ .++|++|..+++++.|++++|.+++||.||.|+|..+.
T Consensus       110 ~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~  170 (447)
T PLN02463        110 RVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC  170 (447)
T ss_pred             eEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence            56778888999999988999996 67999999888888899988888999999999999874

>PLN02697 lycopene epsilon cyclase

Probab=99.46  E-value=1.1e-11  Score=124.24  Aligned_cols=121  Identities=12%  Similarity=0.132  Sum_probs=80.5

Q ss_pred             ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEE-EEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeee
Q psy7710         200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPF  278 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~  278 (473)
                      .++...+.+.|.+.+.+.|+++ .+++|+++..+++++. +.+.+|.+++|+.||.|+|.+|..++...-.....+....
T Consensus       188 ~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~rl~~~~~~~~~~~~Q~a  266 (529)
T PLN02697        188 RVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASGRLLQYEVGGPRVCVQTA  266 (529)
T ss_pred             EEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChhhhhccccCCCCcccEEE
Confidence            5777888999999999999998 6889999988766654 4556666899999999999999655431111112346788


Q ss_pred             eeEEEEeCcCcccCccccccc-----CC-----CCCCCccEEEEecCCCCeEEE
Q psy7710         279 RGEYLLLNPAKQHLVRGNIYP-----VP-----DPNFPFLGVHFTPRMDGSVWL  322 (473)
Q Consensus       279 ~g~~~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~~~~p~~~g~~~i  322 (473)
                      .|+.+.+..++...-......     .+     ....| ..+|+.|..++++.+
T Consensus       267 ~Gi~ve~~~~~~d~~~~vlMD~r~~~~~~~~~~~~~~p-~FlYvlP~~~~~~~V  319 (529)
T PLN02697        267 YGVEVEVENNPYDPSLMVFMDYRDYFKEKVSHLEAEYP-TFLYAMPMSSTRVFF  319 (529)
T ss_pred             EEEEEEecCCCCCcchheeeccccccccccccccCCCc-eEEEEeecCCCeEEE
Confidence            999988865332111011101     00     11112 246999998888888

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=99.45  E-value=1.8e-11  Score=120.53  Aligned_cols=71  Identities=13%  Similarity=0.230  Sum_probs=61.1

Q ss_pred             ceeHHHHHHHHHHHHHHcC-cEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710         200 IVDWGLVTRVMGEEFCELG-GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSL  271 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~  271 (473)
                      .++...+.+.|.+.+.+.| ++++++++|+++..+++++.+++.+|.++++|.||.|.|.+| .+.+.++++.
T Consensus       102 ~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG~~S-~vr~~l~~~~  173 (385)
T TIGR01988       102 VVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADGANS-KVRQLAGIPT  173 (385)
T ss_pred             EEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCCCCC-HHHHHcCCCc
Confidence            3556778899999998888 999999999999988888888888887899999999999998 5777777654

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=99.44  E-value=4e-11  Score=118.12  Aligned_cols=123  Identities=11%  Similarity=0.009  Sum_probs=78.8

Q ss_pred             ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEc-CCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeee
Q psy7710         200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKEN-PESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPF  278 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~  278 (473)
                      .++...+.+.|.+.+.+.|++++ .++|..+..+ ++.+.|++.+|.+++|+.||.|+|.++  +.+.........+...
T Consensus        81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s--~~~~~~~~~~~~~q~~  157 (388)
T TIGR01790        81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP--LVQYVRFPLNVGFQVA  157 (388)
T ss_pred             EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch--hcccccCCCCceEEEE
Confidence            46778899999999998999986 6688888877 566778888877899999999999997  2221111112245567


Q ss_pred             eeEEEEeCcCcccCcccccccC--CCC------CCCccEEEEecCCCCeEEECCC
Q psy7710         279 RGEYLLLNPAKQHLVRGNIYPV--PDP------NFPFLGVHFTPRMDGSVWLGPN  325 (473)
Q Consensus       279 ~g~~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~~~~~p~~~g~~~iG~~  325 (473)
                      .|+.+.+..++...-....+..  ...      ......+|+.|..+++..++.+
T Consensus       158 ~G~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~~  212 (388)
T TIGR01790       158 YGVEARLSRPPHGPSSMVIMDARVDQLAAPELKGYRPTFLYAMPLGSTRVFIEET  212 (388)
T ss_pred             EEEEEEEcCCCCCCCceEEEeccccccccccccCCCCceEEEeecCCCeEEEEec
Confidence            8888877533211101011111  100      0000146888988888888754

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.44  E-value=4.4e-12  Score=115.76  Aligned_cols=137  Identities=20%  Similarity=0.252  Sum_probs=88.6

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK  135 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (473)
                      .++||+|||||++|+++|+.|+++  |.+|+|+||...+|++.+.  .+...+.....             ....++   
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~~--G~~V~vlEk~~~~Ggg~~~--gg~~~~~~~~~-------------~~~~~~---   79 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAKN--GLKVCVLERSLAFGGGSWG--GGMLFSKIVVE-------------KPAHEI---   79 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCCccccC--CCcceeccccc-------------chHHHH---
Confidence            468999999999999999999999  9999999999777655432  12211110000             000111   


Q ss_pred             cCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHH
Q psy7710         136 RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC  215 (473)
Q Consensus       136 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  215 (473)
                                                  +.+.++ ..+...              .+.+     ..+...+...|.+.+.
T Consensus        80 ----------------------------l~~~gi-~~~~~~--------------~g~~-----~~~~~el~~~L~~~a~  111 (254)
T TIGR00292        80 ----------------------------LDEFGI-RYEDEG--------------DGYV-----VADSAEFISTLASKAL  111 (254)
T ss_pred             ----------------------------HHHCCC-Ceeecc--------------CceE-----EeeHHHHHHHHHHHHH
Confidence                                        122232 110000              0000     1344678888999999


Q ss_pred             HcCcEEEeCceEEEEEEcCC--eE-EEEcC-----------CCcEEEcCEEEEcCCcCh
Q psy7710         216 ELGGEIRLNQQVESFKENPE--SV-TISTK-----------QGDHLESSYALVCAGLQA  260 (473)
Q Consensus       216 ~~Gv~i~~~~~V~~i~~~~~--~v-~v~~~-----------~g~~i~ad~VV~aaG~~s  260 (473)
                      +.|++++.++.|.++..+++  .+ .|.++           +...++|+.||.|||..+
T Consensus       112 e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a  170 (254)
T TIGR00292       112 QAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDA  170 (254)
T ss_pred             HcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCc
Confidence            99999999999999987655  23 34332           124789999999999875

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.44  E-value=2.4e-12  Score=109.28  Aligned_cols=137  Identities=20%  Similarity=0.246  Sum_probs=90.6

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK  135 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (473)
                      ...||+|||||++||++||+|+++  |+||+|+||...+|+|...  +|++.+..-.             .+...++.++
T Consensus        29 ~esDViIVGaGPsGLtAAyyLAk~--g~kV~i~E~~ls~GGG~w~--GGmlf~~iVv-------------~~~a~~iL~e   91 (262)
T COG1635          29 LESDVIIVGAGPSGLTAAYYLAKA--GLKVAIFERKLSFGGGIWG--GGMLFNKIVV-------------REEADEILDE   91 (262)
T ss_pred             hhccEEEECcCcchHHHHHHHHhC--CceEEEEEeecccCCcccc--cccccceeee-------------cchHHHHHHH
Confidence            457999999999999999999999  9999999999777766532  2222111000             0111223333


Q ss_pred             cCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHH
Q psy7710         136 RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC  215 (473)
Q Consensus       136 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  215 (473)
                      ++++|...+.                                              +++     ..|+..++..|...+.
T Consensus        92 ~gI~ye~~e~----------------------------------------------g~~-----v~ds~e~~skl~~~a~  120 (262)
T COG1635          92 FGIRYEEEED----------------------------------------------GYY-----VADSAEFASKLAARAL  120 (262)
T ss_pred             hCCcceecCC----------------------------------------------ceE-----EecHHHHHHHHHHHHH
Confidence            3333321110                                              011     3456778888988999


Q ss_pred             HcCcEEEeCceEEEEEEcCC-eEE-EEcC-----------CCcEEEcCEEEEcCCcCh
Q psy7710         216 ELGGEIRLNQQVESFKENPE-SVT-ISTK-----------QGDHLESSYALVCAGLQA  260 (473)
Q Consensus       216 ~~Gv~i~~~~~V~~i~~~~~-~v~-v~~~-----------~g~~i~ad~VV~aaG~~s  260 (473)
                      +.|++|+..+.|+++...++ ++. |.++           |-..++|++||-|||.-+
T Consensus       121 ~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda  178 (262)
T COG1635         121 DAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDA  178 (262)
T ss_pred             hcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCch
Confidence            99999999999999986655 332 2211           124688999999999876

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.43  E-value=4.3e-12  Score=116.20  Aligned_cols=138  Identities=18%  Similarity=0.198  Sum_probs=90.3

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK  135 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (473)
                      .++||+|||||++|+++|++|++.  |++|+|+|+...+|++.++  .+.+....     ..        .         
T Consensus        24 ~~~DVvIVGgGpAGl~AA~~la~~--G~~V~liEk~~~~Ggg~~~--gg~~~~~~-----~v--------~---------   77 (257)
T PRK04176         24 LEVDVAIVGAGPSGLTAAYYLAKA--GLKVAVFERKLSFGGGMWG--GGMLFNKI-----VV--------Q---------   77 (257)
T ss_pred             ccCCEEEECccHHHHHHHHHHHhC--CCeEEEEecCCCCCCcccc--Cccccccc-----cc--------h---------
Confidence            468999999999999999999999  9999999998777654321  11110000     00        0         


Q ss_pred             cCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHH
Q psy7710         136 RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC  215 (473)
Q Consensus       136 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  215 (473)
                                            ......+.+.++ ......                   +....+++..+...|.+.++
T Consensus        78 ----------------------~~~~~~l~~~gv-~~~~~~-------------------~g~~~vd~~~l~~~L~~~A~  115 (257)
T PRK04176         78 ----------------------EEADEILDEFGI-RYKEVE-------------------DGLYVADSVEAAAKLAAAAI  115 (257)
T ss_pred             ----------------------HHHHHHHHHCCC-Cceeec-------------------CcceeccHHHHHHHHHHHHH
Confidence                                  011122223333 111100                   00113567788999999999


Q ss_pred             HcCcEEEeCceEEEEEEcCC-eE-EEEcC-----------CCcEEEcCEEEEcCCcChH
Q psy7710         216 ELGGEIRLNQQVESFKENPE-SV-TISTK-----------QGDHLESSYALVCAGLQAD  261 (473)
Q Consensus       216 ~~Gv~i~~~~~V~~i~~~~~-~v-~v~~~-----------~g~~i~ad~VV~aaG~~s~  261 (473)
                      +.|++++++++|+++..+++ .+ .+...           +...++|+.||+|+|.++.
T Consensus       116 ~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~  174 (257)
T PRK04176        116 DAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE  174 (257)
T ss_pred             HcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH
Confidence            99999999999999986544 33 23221           1247999999999999974

>PRK07121 hypothetical protein; Validated

Probab=99.43  E-value=1.7e-11  Score=124.23  Aligned_cols=197  Identities=19%  Similarity=0.162  Sum_probs=102.5

Q ss_pred             CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEee--ccCCCchhHHHHH-HHhHHHHHH
Q psy7710          55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAG--IYYKPGTLKAKLC-VEGMNLAYE  131 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~--~~~~~~~~~~~~~-~~~~~~~~~  131 (473)
                      +.++||||||+|++|+++|++++++  |.+|+||||.+ ..+++|..+.|.+...  ...     ..... ..+.+.+.+
T Consensus        18 ~~~~DVvVVGaG~AGl~AA~~aae~--G~~VillEK~~-~~gG~s~~sgG~~~~~~g~~~-----q~~~g~~d~~~~~~~   89 (492)
T PRK07121         18 DDEADVVVVGFGAAGACAAIEAAAA--GARVLVLERAA-GAGGATALSGGVIYLGGGTAV-----QKAAGFEDSPENMYA   89 (492)
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCC-CCCCcccccCeEEEeCCCcHH-----HHhcCCCCCHHHHHH
Confidence            4679999999999999999999999  99999999985 4556676677765432  100     00000 000111111


Q ss_pred             HH-HhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCC------------------cc-c-c
Q psy7710         132 YF-DKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPY------------------CK-G-V  190 (473)
Q Consensus       132 ~~-~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~------------------~~-~-~  190 (473)
                      .. +..+-..+. ..+..    -.+...+.++++.++|+ .+......+ ...+|.                  .. . .
T Consensus        90 ~~~~~~~~~~d~-~l~~~----~~~~s~~~i~wl~~~Gv-~f~~~~~~~-~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~  162 (492)
T PRK07121         90 YLRVAVGPGVDE-EKLRR----YCEGSVEHFDWLEGLGV-PFERSFFPE-KTSYPPNDEGLYYSGNEKAWPFAEIAKPAP  162 (492)
T ss_pred             HHHHHhCCCCCH-HHHHH----HHHccHHHHHHHHHcCc-EEEeccCCC-cccCCCCCcccccchhhcchhhhhccCCcc
Confidence            11 100000000 00000    00111223334444444 221100000 000000                  00 0 0


Q ss_pred             eeEecCCccce-eHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcC-CeE-EEEcC-CC--cEEEc-CEEEEcCCcCh--H
Q psy7710         191 KAIHSPNTGIV-DWGLVTRVMGEEFCELGGEIRLNQQVESFKENP-ESV-TISTK-QG--DHLES-SYALVCAGLQA--D  261 (473)
Q Consensus       191 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~v-~v~~~-~g--~~i~a-d~VV~aaG~~s--~  261 (473)
                      ........+.. ....+...|.+.+++.|++|+++++|++|..++ +.+ .|... ++  ..++| +.||+|+|+++  .
T Consensus       163 ~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~  242 (492)
T PRK07121        163 RGHRVQGPGDSGGGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFAMNR  242 (492)
T ss_pred             cceecCCCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCH
Confidence            00111111111 356788899999999999999999999998764 333 34332 22  35789 99999999884  4


Q ss_pred             HHHHh
Q psy7710         262 EMALK  266 (473)
Q Consensus       262 ~l~~~  266 (473)
                      ++++.
T Consensus       243 em~~~  247 (492)
T PRK07121        243 EMVAR  247 (492)
T ss_pred             HHHHH
Confidence            55543

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.41  E-value=8.5e-12  Score=123.57  Aligned_cols=71  Identities=15%  Similarity=0.304  Sum_probs=61.0

Q ss_pred             ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710         200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSL  271 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~  271 (473)
                      .++...+.+.|.+.+++.|++++++++|+++..+++++.|++.+|.+++||.||.|+|.+| .+.+.+|++.
T Consensus       108 ~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S-~vR~~lg~~~  178 (405)
T PRK05714        108 IVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANS-AVRRLAGCAT  178 (405)
T ss_pred             EEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCc-hhHHhcCCCc
Confidence            3455677788888888889999999999999988888888888887899999999999998 6878888754

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.41  E-value=1.3e-11  Score=123.49  Aligned_cols=188  Identities=20%  Similarity=0.196  Sum_probs=100.7

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCC-CeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHH-HHhHH-HHHHHHHh
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPK-MKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLC-VEGMN-LAYEYFDK  135 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G-~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~  135 (473)
                      ||||||+|++|+++|++++++  | .+|+||||.+ ..+++|..+.|.+......    ...... ..+.+ .+.++.+.
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~--G~~~V~vlEk~~-~~gg~s~~s~g~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~   73 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKA--GAANVVLLEKMP-VIGGNSAIAAGGMNAAGTD----QQKALGIEDSPELFIKDTLKG   73 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHc--CCccEEEEecCC-CCCCcccccCceeecCCCH----HHHhcCCCCCHHHHHHHHHHh
Confidence            799999999999999999999  9 9999999985 5556676666655432110    000000 00111 11111111


Q ss_pred             cCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHH
Q psy7710         136 RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC  215 (473)
Q Consensus       136 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  215 (473)
                       ..... ...+.-.   -.+.....++++. .++ .++.-.   .  ..+........+.+..+......+...|.+.++
T Consensus        74 -~~~~~-~~~l~~~---~~~~~~~~i~wl~-~~~-~~~~~~---~--~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~  141 (439)
T TIGR01813        74 -GRGIN-DPELVRI---LAEESADAVDWLQ-DGV-GARLDD---L--IQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAK  141 (439)
T ss_pred             -cCCCC-CHHHHHH---HHhccHHHHHHHH-hCC-Ceeecc---c--cccCCcCCCccccCCCCCCCHHHHHHHHHHHHH
Confidence             00000 0000000   0000111223333 222 111100   0  000000011122333444556788999999999


Q ss_pred             HcCcEEEeCceEEEEEEcC-Ce---EEEEcCCCc--EEEcCEEEEcCCcChH--HHHH
Q psy7710         216 ELGGEIRLNQQVESFKENP-ES---VTISTKQGD--HLESSYALVCAGLQAD--EMAL  265 (473)
Q Consensus       216 ~~Gv~i~~~~~V~~i~~~~-~~---v~v~~~~g~--~i~ad~VV~aaG~~s~--~l~~  265 (473)
                      +.|++|+++++|++|..++ +.   +.+.+.++.  .+.+|.||+|+|+++.  ++.+
T Consensus       142 ~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~~  199 (439)
T TIGR01813       142 KEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMIA  199 (439)
T ss_pred             HcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHHH
Confidence            9999999999999999854 32   334444553  4689999999999853  4444

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.41  E-value=7.2e-12  Score=124.28  Aligned_cols=69  Identities=19%  Similarity=0.265  Sum_probs=56.3

Q ss_pred             ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEE-EEcCCCcEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710         200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQADEMALKSGCS  270 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~  270 (473)
                      .+....+-+.|.+.+++.|++++.+++|+++..+++.+. +.+ ++.+++||.||.|+|.++ .+.+.+|+.
T Consensus       104 ~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~-~g~~i~A~~VI~A~G~~s-~l~~~lgl~  173 (428)
T PRK10157        104 SVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEA-DGDVIEAKTVILADGVNS-ILAEKLGMA  173 (428)
T ss_pred             eeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEc-CCcEEECCEEEEEeCCCH-HHHHHcCCC
Confidence            345567888899999999999999999999987776654 444 445899999999999986 678888875

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.40  E-value=1.1e-11  Score=125.03  Aligned_cols=184  Identities=12%  Similarity=0.103  Sum_probs=100.8

Q ss_pred             CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCc-ccCcccCCCcceEEeeccCCCchhHHHHHHHh-HHHHHHH
Q psy7710          55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKE-LGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEG-MNLAYEY  132 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~-~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  132 (473)
                      +.++||+|||+|++|+++|++++++  |.+|+||||.+. ..+++|..+.|+.....  ....  ......+ .+.+.++
T Consensus         2 ~~~~DVvVVG~G~aGl~AA~~aa~~--G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~--~~~~--~~~~~~~~~~~~~~~   75 (466)
T PRK08274          2 ASMVDVLVIGGGNAALCAALAAREA--GASVLLLEAAPREWRGGNSRHTRNLRCMHD--APQD--VLVGAYPEEEFWQDL   75 (466)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCCcCCCcccccCCceeeeCC--Cchh--hccccccHHHHHHHH
Confidence            3578999999999999999999999  999999999853 24566666666322211  0000  0000011 1122222


Q ss_pred             HHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHH
Q psy7710         133 FDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGE  212 (473)
Q Consensus       133 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~  212 (473)
                      .+..+-.... ..+..    -.+...+.++++.+.|+ .+........   .+   .....+...    ....+...|.+
T Consensus        76 ~~~~~~~~~~-~~~~~----~~~~s~~~~~wl~~~Gv-~~~~~~~~~~---~~---~~~~~~~~g----~g~~l~~~l~~  139 (466)
T PRK08274         76 LRVTGGRTDE-ALARL----LIRESSDCRDWMRKHGV-RFQPPLSGAL---HV---ARTNAFFWG----GGKALVNALYR  139 (466)
T ss_pred             HHhhCCCCCH-HHHHH----HHHcCHHHHHHHHhCCc-eEeecCCCcc---cc---CCCCeeecC----CHHHHHHHHHH
Confidence            2211100000 00000    00111233444555665 3322111000   00   000001111    14668888999


Q ss_pred             HHHHcCcEEEeCceEEEEEEcCCeEE-EEc--CCC--cEEEcCEEEEcCCcCh
Q psy7710         213 EFCELGGEIRLNQQVESFKENPESVT-IST--KQG--DHLESSYALVCAGLQA  260 (473)
Q Consensus       213 ~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~~--~~g--~~i~ad~VV~aaG~~s  260 (473)
                      .+++.|++++++++|++|..+++++. |.+  .++  ..++|+.||+|+|++.
T Consensus       140 ~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~  192 (466)
T PRK08274        140 SAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGFE  192 (466)
T ss_pred             HHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCCC
Confidence            99999999999999999988666543 443  233  4689999999999873

>PRK06847 hypothetical protein; Provisional

Probab=99.40  E-value=2.9e-11  Score=118.63  Aligned_cols=64  Identities=16%  Similarity=0.275  Sum_probs=55.9

Q ss_pred             ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHH
Q psy7710         200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEM  263 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l  263 (473)
                      .++...+.+.|.+.+.+.|++++++++|+++..+++.+.|.+.+|.++++|.||.|+|.+|..-
T Consensus       103 ~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~s~~r  166 (375)
T PRK06847        103 GIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLYSKVR  166 (375)
T ss_pred             cCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCCcchh
Confidence            4566778889999998899999999999999988888888888887899999999999998543

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=99.40  E-value=7.2e-11  Score=116.12  Aligned_cols=71  Identities=8%  Similarity=0.147  Sum_probs=61.4

Q ss_pred             ceeHHHHHHHHHHHHHH-cCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710         200 IVDWGLVTRVMGEEFCE-LGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSL  271 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~  271 (473)
                      .++...+.+.|.+.+.+ .|++++++++|+++..+++++.|++.+|.+++||.||.|.|.+| .+.+.++++.
T Consensus       101 ~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~~S-~vr~~l~~~~  172 (382)
T TIGR01984       101 VVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGANS-KVRELLSIPT  172 (382)
T ss_pred             EEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCCCh-HHHHHcCCCC
Confidence            36678899999999988 49999999999999988888888888887899999999999998 4888887663

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=99.39  E-value=1.1e-11  Score=123.31  Aligned_cols=188  Identities=20%  Similarity=0.185  Sum_probs=98.4

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeec-cCC-----CchhHHHHHHHhHHHHHHH
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGI-YYK-----PGTLKAKLCVEGMNLAYEY  132 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~  132 (473)
                      ||+|||+|++|+++|+.++++  |.+|+||||.+..++ ++..+.|.+.... ...     .+..        ...+.++
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~--G~~V~lvek~~~~gg-~~~~s~g~~~~~~~~~~~~~~~~d~~--------~~~~~~~   69 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEA--GAKVLLVEKGPRLGG-SSAFSSGGFDAAGTPPQREAGIEDSP--------EEFFQDI   69 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHT--TT-EEEEESSSGGGS-GGGGTCSEEEESSSHSSHHTTTTCHH--------HHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHhhh--cCeEEEEEeeccccc-ccccccCceeeecccccccccccccc--------cccceee
Confidence            899999999999999999999  999999999966555 5666666554332 111     0111        1111111


Q ss_pred             HHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhh--cCCcccc-eeEe-cCC---ccceeHHH
Q psy7710         133 FDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTI--EPYCKGV-KAIH-SPN---TGIVDWGL  205 (473)
Q Consensus       133 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~--~p~~~~~-~~~~-~~~---~~~~~~~~  205 (473)
                      .+...-.... ..+..    -.+...+.++++.+.|+ .+..- .+.....  .+..... ...+ ...   ........
T Consensus        70 ~~~~~~~~~~-~~~~~----~~~~~~~~~~~l~~~g~-~~~~~-~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~  142 (417)
T PF00890_consen   70 MAAGGGLNDP-DLVRA----FVENSPEAIDWLEELGV-PFRRD-EDGPFAPTPFGGHSPRWRSPPGNPDPPFGGLGGGKA  142 (417)
T ss_dssp             HHHTTT-S-H-HHHHH----HHHHHHHHHHHHHHTT---B-BG-TTSSBCEEEETTESSTEEEEESSTTSSSHCCCHHHH
T ss_pred             eccccccccc-chhhh----hhhcccceehhhhhhcc-ccccc-ccccccccccCCccccceeeeccccccccccccHHH
Confidence            1111100000 00000    01233445555666655 22210 0000000  0000001 0111 111   11224577


Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEE---EE-cCCC--cEEEcCEEEEcCCcChHHHH
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVT---IS-TKQG--DHLESSYALVCAGLQADEMA  264 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~---v~-~~~g--~~i~ad~VV~aaG~~s~~l~  264 (473)
                      +...|.+.++++|++|+++++|++|..++++|.   +. ..+|  ..++|+.||+|||.++.++.
T Consensus       143 ~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~~~~  207 (417)
T PF00890_consen  143 LIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGGELL  207 (417)
T ss_dssp             HHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGGHHH
T ss_pred             HHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCccccccc
Confidence            899999999999999999999999999877654   33 2345  35789999999999975343

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.38  E-value=2e-11  Score=120.31  Aligned_cols=70  Identities=19%  Similarity=0.310  Sum_probs=58.2

Q ss_pred             eeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710         201 VDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSL  271 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~  271 (473)
                      ++...+.+.|.+.+.+.+...+++++|+++..+++.+.|++++|.+++||.||.|+|.+| .+.+.+|++.
T Consensus       108 i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S-~vr~~~g~~~  177 (388)
T PRK07494        108 IPNWLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLADGTTLSARLVVGADGRNS-PVREAAGIGV  177 (388)
T ss_pred             eEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEecCCCc-hhHHhcCCCc
Confidence            555678888888888775444889999999988888888888887899999999999998 5778888764

>PRK06185 hypothetical protein; Provisional

Probab=99.38  E-value=2.3e-11  Score=120.61  Aligned_cols=82  Identities=13%  Similarity=0.134  Sum_probs=60.8

Q ss_pred             eeHHHHHHHHHHHHHHc-CcEEEeCceEEEEEEcCCeE---EEEcCCCc-EEEcCEEEEcCCcChHHHHHhcCCCCCCce
Q psy7710         201 VDWGLVTRVMGEEFCEL-GGEIRLNQQVESFKENPESV---TISTKQGD-HLESSYALVCAGLQADEMALKSGCSLEPAI  275 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~v---~v~~~~g~-~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~  275 (473)
                      +....+.+.|.+.+.+. |++++++++|+++..+++.+   .+.+.+|. +++||.||.|+|.+|. +.+.+|++.  ..
T Consensus       105 v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S~-vr~~~gi~~--~~  181 (407)
T PRK06185        105 MPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHSR-VRALAGLEV--RE  181 (407)
T ss_pred             eehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCchH-HHHHcCCCc--cc
Confidence            44456778888887764 89999999999998877654   34445663 7999999999999984 888888764  34


Q ss_pred             eeeeeEEEEe
Q psy7710         276 VPFRGEYLLL  285 (473)
Q Consensus       276 ~p~~g~~~~~  285 (473)
                      .+..++.+.+
T Consensus       182 ~~~~~~~~~~  191 (407)
T PRK06185        182 FGAPMDVLWF  191 (407)
T ss_pred             cCCCceeEEE
Confidence            4555555544

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=99.38  E-value=1.1e-11  Score=122.20  Aligned_cols=85  Identities=6%  Similarity=0.141  Sum_probs=67.4

Q ss_pred             eeHHHHHHHHHHHHHHc-CcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeee
Q psy7710         201 VDWGLVTRVMGEEFCEL-GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFR  279 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~  279 (473)
                      ++...+.+.|.+.+++. |++++++++|+++..+++++.|++.+|.+++||.||.|.|.+| .+.+.+|+......++..
T Consensus       109 i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S-~vR~~~~~~~~~~~y~~~  187 (391)
T PRK08020        109 VENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIGADGANS-QVRQMAGIGVHGWQYRQS  187 (391)
T ss_pred             EEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEEeCCCCc-hhHHHcCCCccccCCCce
Confidence            45567788888888776 9999999999999988888888888887899999999999998 488888876543445555


Q ss_pred             eEEEEeC
Q psy7710         280 GEYLLLN  286 (473)
Q Consensus       280 g~~~~~~  286 (473)
                      ++.+.+.
T Consensus       188 ~~~~~~~  194 (391)
T PRK08020        188 CMLISVK  194 (391)
T ss_pred             EEEEEEE
Confidence            5555553

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.37  E-value=1.9e-11  Score=104.74  Aligned_cols=137  Identities=23%  Similarity=0.313  Sum_probs=80.1

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK  135 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (473)
                      .++||+|||||++|+++|++|+++  |+||+|+|+...+|++..+..  +....+-....             ...+.++
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~--g~kV~v~E~~~~~GGg~~~Gg--~lf~~iVVq~~-------------a~~iL~e   78 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKA--GLKVAVIERKLSPGGGMWGGG--MLFNKIVVQEE-------------ADEILDE   78 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHH--TS-EEEEESSSS-BTTTTS-C--TT---EEEETT-------------THHHHHH
T ss_pred             ccCCEEEECCChhHHHHHHHHHHC--CCeEEEEecCCCCCccccccc--cccchhhhhhh-------------HHHHHHh
Confidence            468999999999999999999999  999999999877776643211  10000000000             0011122


Q ss_pred             cCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHH
Q psy7710         136 RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC  215 (473)
Q Consensus       136 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  215 (473)
                      +++.+...+                                              .+++     ..|+..++..|...+.
T Consensus        79 lgi~y~~~~----------------------------------------------~g~~-----v~d~~~~~s~L~s~a~  107 (230)
T PF01946_consen   79 LGIPYEEYG----------------------------------------------DGYY-----VADSVEFTSTLASKAI  107 (230)
T ss_dssp             HT---EE-S----------------------------------------------SEEE-----ES-HHHHHHHHHHHHH
T ss_pred             CCceeEEeC----------------------------------------------CeEE-----EEcHHHHHHHHHHHHh
Confidence            222211100                                              0111     3466778888888888


Q ss_pred             HcCcEEEeCceEEEEEEcC-CeEE-EEc------CCC-----cEEEcCEEEEcCCcCh
Q psy7710         216 ELGGEIRLNQQVESFKENP-ESVT-IST------KQG-----DHLESSYALVCAGLQA  260 (473)
Q Consensus       216 ~~Gv~i~~~~~V~~i~~~~-~~v~-v~~------~~g-----~~i~ad~VV~aaG~~s  260 (473)
                      +.|++|+..+.|+++...+ +++. |.+      ..|     ..++|+.||-|||.-+
T Consensus       108 ~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda  165 (230)
T PF01946_consen  108 DAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDA  165 (230)
T ss_dssp             TTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSS
T ss_pred             cCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCch
Confidence            8999999999999998665 5543 322      122     4789999999999764

>PRK08244 hypothetical protein; Provisional

Probab=99.37  E-value=8.9e-11  Score=119.17  Aligned_cols=69  Identities=22%  Similarity=0.305  Sum_probs=55.5

Q ss_pred             eHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEc--CCC-cEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710         202 DWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTIST--KQG-DHLESSYALVCAGLQADEMALKSGCSL  271 (473)
Q Consensus       202 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~--~~g-~~i~ad~VV~aaG~~s~~l~~~~g~~~  271 (473)
                      ....+.+.|.+.+++.|++++++++|+++..+++++.++.  .+| .+++||+||.|.|.+| .+.+.+|++.
T Consensus        98 ~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S-~vR~~lgi~~  169 (493)
T PRK08244         98 PQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGS-IVRKQAGIAF  169 (493)
T ss_pred             cHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCCh-HHHHhcCCCc
Confidence            3456677788888888999999999999998887776543  345 4799999999999998 5778888764

>PRK07804 L-aspartate oxidase; Provisional

Probab=99.37  E-value=3.4e-11  Score=122.74  Aligned_cols=180  Identities=17%  Similarity=0.133  Sum_probs=99.7

Q ss_pred             CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeecc--CCCchhHHHHHHHh-----HH
Q psy7710          55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIY--YKPGTLKAKLCVEG-----MN  127 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~--~~~~~~~~~~~~~~-----~~  127 (473)
                      ..++||+|||+|++|+++|+.+++.  |.+|+||||.. ..+++|..+.|.+.....  ..++.........+     .+
T Consensus        14 ~~~~DVlVIG~G~AGl~AAi~aae~--G~~VilleK~~-~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~   90 (541)
T PRK07804         14 RDAADVVVVGSGVAGLTAALAARRA--GRRVLVVTKAA-LDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPD   90 (541)
T ss_pred             ccccCEEEECccHHHHHHHHHHHHc--CCeEEEEEccC-CCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHH
Confidence            4579999999999999999999999  99999999984 555566655554433211  11111111110000     00


Q ss_pred             HHHHHHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHH-HhhcCCcccceeEecCCccceeHHHH
Q psy7710         128 LAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEI-KTIEPYCKGVKAIHSPNTGIVDWGLV  206 (473)
Q Consensus       128 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~  206 (473)
                      .++.+                     .+...+.++++.++|+ .+..-....+ ...+.... ..-.+.. .+......+
T Consensus        91 ~v~~~---------------------~~~s~~~i~~L~~~Gv-~f~~~~~G~~~~~~~~g~~-~~r~~~~-~~d~~G~~i  146 (541)
T PRK07804         91 AVRSL---------------------VAEGPRAVRELVALGA-RFDESPDGRWALTREGGHS-RRRIVHA-GGDATGAEV  146 (541)
T ss_pred             HHHHH---------------------HHHHHHHHHHHHHcCC-ccccCCCCcEeeeccCCee-cCeeEec-CCCCCHHHH
Confidence            01111                     1122333445555555 2211000000 00000000 0001111 011134668


Q ss_pred             HHHHHHHHHHcCcEEEeCceEEEEEEcC-Ce---EEEE-----cCCC-cEEEcCEEEEcCCcChH
Q psy7710         207 TRVMGEEFCELGGEIRLNQQVESFKENP-ES---VTIS-----TKQG-DHLESSYALVCAGLQAD  261 (473)
Q Consensus       207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~---v~v~-----~~~g-~~i~ad~VV~aaG~~s~  261 (473)
                      ...|.+.+++.|++++.++.|+++..++ +.   +.+.     ..++ ..+.|+.||+|+|+++.
T Consensus       147 ~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~~  211 (541)
T PRK07804        147 QRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLGQ  211 (541)
T ss_pred             HHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCCC
Confidence            8889999999999999999999998764 33   3333     2333 36889999999999763

>PRK06184 hypothetical protein; Provisional

Probab=99.37  E-value=9.5e-11  Score=119.18  Aligned_cols=68  Identities=16%  Similarity=0.296  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEc---CCCcEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710         203 WGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTIST---KQGDHLESSYALVCAGLQADEMALKSGCSL  271 (473)
Q Consensus       203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~---~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~  271 (473)
                      ...+.+.|.+.+.+.|++|+++++|+++..+++++.++.   .++.+++||+||.|+|.+| .+.+.+|++.
T Consensus       108 q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S-~vR~~lgi~~  178 (502)
T PRK06184        108 QWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRS-FVRKALGIGF  178 (502)
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCch-HHHHhCCCCc
Confidence            345667888888888999999999999998887777655   4556899999999999998 5788888765

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.36  E-value=1.6e-10  Score=113.65  Aligned_cols=69  Identities=16%  Similarity=0.266  Sum_probs=55.0

Q ss_pred             ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCC------C--cEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710         200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQ------G--DHLESSYALVCAGLQADEMALKSGCS  270 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~------g--~~i~ad~VV~aaG~~s~~l~~~~g~~  270 (473)
                      .++...+-+.|.+.+.+.|++++.. .|+++..+++.+.|++.+      +  .+++||.||.|+|.+| .+.+.+|+.
T Consensus        88 ~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S-~v~r~lg~~  164 (388)
T TIGR02023        88 MVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANS-PVAKELGLP  164 (388)
T ss_pred             eeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCc-HHHHHcCCC
Confidence            3666788889999999999999754 699998888777765432      2  3799999999999998 577888875

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK06834 hypothetical protein; Provisional

Probab=99.36  E-value=2.1e-11  Score=122.77  Aligned_cols=68  Identities=22%  Similarity=0.400  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCC
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLE  272 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~  272 (473)
                      ..+.+.|.+.+++.|++|+++++|+++..+++++.+++.+|.+++||+||.|.|.+| .+.+.+|++..
T Consensus       100 ~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S-~vR~~lgi~~~  167 (488)
T PRK06834        100 NHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRS-LVRKAAGIDFP  167 (488)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCC-CcHhhcCCCCC
Confidence            557777888888889999999999999998888888887777899999999999998 57888887753

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.35  E-value=3.3e-11  Score=123.91  Aligned_cols=188  Identities=13%  Similarity=0.122  Sum_probs=98.0

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeecc-CCC-chhHHHHHHHhHHHHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIY-YKP-GTLKAKLCVEGMNLAYEYF  133 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~  133 (473)
                      .++||+|||+|++|++||++++++++|.+|+||||.. +.++.|..+.|.+..... ..+ +... ...       .+..
T Consensus         2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~-~~gg~s~~a~GGi~a~~~~~~~~ds~e-~~~-------~d~~   72 (575)
T PRK05945          2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTH-PIRSHSVAAQGGIAASLKNVDPEDSWE-AHA-------FDTV   72 (575)
T ss_pred             CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccC-CCchhhHHhccchhhhccCCCCCCCHH-HHH-------HHHH
Confidence            3579999999999999999999885568999999984 433334333333322211 111 1111 100       0110


Q ss_pred             HhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHH-hhcCCcccceeEecCCccceeHHHHHHHHHH
Q psy7710         134 DKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIK-TIEPYCKGVKAIHSPNTGIVDWGLVTRVMGE  212 (473)
Q Consensus       134 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~  212 (473)
                      .......++ ..+..    -.+...+.+.++.++|+ .+...+...+. ..+.........+ +.+  .....++..|.+
T Consensus        73 ~~~~~l~d~-~~v~~----l~~~a~~~i~~L~~~Gv-~f~~~~~g~~~~~~~gg~~~~r~~~-~~~--~tG~~i~~~L~~  143 (575)
T PRK05945         73 KGSDYLADQ-DAVAI----LTQEAPDVIIDLEHLGV-LFSRLPDGRIAQRAFGGHSHNRTCY-AAD--KTGHAILHELVN  143 (575)
T ss_pred             HHhCCCCCH-HHHHH----HHHHHHHHHHHHHHcCC-ceEECCCCcEeeccccccccCeeEe-cCC--CChHHHHHHHHH
Confidence            000000000 00000    01122333444555665 23221111000 0000000000111 111  123568888999


Q ss_pred             HHHHcCcEEEeCceEEEEEEcCCeEE-E---EcCCC--cEEEcCEEEEcCCcChH
Q psy7710         213 EFCELGGEIRLNQQVESFKENPESVT-I---STKQG--DHLESSYALVCAGLQAD  261 (473)
Q Consensus       213 ~~~~~Gv~i~~~~~V~~i~~~~~~v~-v---~~~~g--~~i~ad~VV~aaG~~s~  261 (473)
                      .+++.|+++++++.|+++..+++.+. +   ...++  ..+.|+.||+|||+++.
T Consensus       144 ~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~  198 (575)
T PRK05945        144 NLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGR  198 (575)
T ss_pred             HHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcC
Confidence            89889999999999999987665432 2   33455  35899999999999863

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.35  E-value=4.4e-11  Score=117.45  Aligned_cols=67  Identities=18%  Similarity=0.297  Sum_probs=58.1

Q ss_pred             eeHHHHHHHHHHHHHHcC-cEEEeCceEEEEEEcCCeEEEEcC-CCcEEEcCEEEEcCCcChHHHHHhcC
Q psy7710         201 VDWGLVTRVMGEEFCELG-GEIRLNQQVESFKENPESVTISTK-QGDHLESSYALVCAGLQADEMALKSG  268 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~v~v~~~-~g~~i~ad~VV~aaG~~s~~l~~~~g  268 (473)
                      +.-..+...|.+.+.+.+ ++++++++|+.+..+++.+.++.+ +|++++||.||-|.|.+| .+.+.++
T Consensus       101 ~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S-~vR~~~~  169 (387)
T COG0654         101 VPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANS-AVRRAAG  169 (387)
T ss_pred             eEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCch-HHHHhcC
Confidence            445678889999998776 899999999999999888877777 888899999999999998 6778777

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.35  E-value=3.1e-11  Score=124.98  Aligned_cols=194  Identities=11%  Similarity=0.101  Sum_probs=97.5

Q ss_pred             CCCCCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccC--CCchhHHHHHHHhHHHH
Q psy7710          52 SQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYY--KPGTLKAKLCVEGMNLA  129 (473)
Q Consensus        52 ~~~~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~  129 (473)
                      .....++||+|||+|.+|+++|+.+++.  |.+|+||||...+++++|..+.|.+......  ..++. .       ..+
T Consensus        30 ~~~~~~~DVlVVG~G~AGl~AAi~Aae~--G~~VilieK~~~~~~g~s~~a~GGi~a~~~~~~~~Ds~-~-------~~~   99 (640)
T PRK07573         30 PANKRKFDVIVVGTGLAGASAAATLGEL--GYNVKVFCYQDSPRRAHSIAAQGGINAAKNYQNDGDSV-Y-------RLF   99 (640)
T ss_pred             CccccccCEEEECccHHHHHHHHHHHHc--CCcEEEEecCCCCCcchhHHhhhchHhHhhccccCCCH-H-------HHH
Confidence            3334578999999999999999999999  9999999987556555554444433211110  00111 0       011


Q ss_pred             HHHHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHH-hhcCCcccceeEecCC-ccceeHHHHH
Q psy7710         130 YEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIK-TIEPYCKGVKAIHSPN-TGIVDWGLVT  207 (473)
Q Consensus       130 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~p~~~~~~~~~~~~-~~~~~~~~~~  207 (473)
                      .+..+.-....+. ..+..    -.+...+.++++.++|+ .+..-....+. ..+.........+... .|..-...+.
T Consensus       100 ~d~~~~g~~~~d~-~lv~~----l~~~s~~~i~wL~~~GV-~f~~~~~g~~~~~~~gghs~~R~~~~~~~tG~~i~~~l~  173 (640)
T PRK07573        100 YDTVKGGDFRARE-ANVYR----LAEVSVNIIDQCVAQGV-PFAREYGGLLANRSFGGAQVSRTFYARGQTGQQLLLGAY  173 (640)
T ss_pred             HHHHHhcCCCCCH-HHHHH----HHHHHHHHHHHHHhcCC-ccccCCCCceeccccCCcccceeEeCCCCCchhHHHHHH
Confidence            1111100000000 00000    01122344455555665 22210000000 0000000001111110 1110012233


Q ss_pred             HHHHHHHHHcCcEEEeCceEEEEEEcCCeEE-EEc---CCC--cEEEcCEEEEcCCcChH
Q psy7710         208 RVMGEEFCELGGEIRLNQQVESFKENPESVT-IST---KQG--DHLESSYALVCAGLQAD  261 (473)
Q Consensus       208 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~~---~~g--~~i~ad~VV~aaG~~s~  261 (473)
                      +.|.+.+++.|++|++++.|++|..+++.+. |..   .+|  ..+.|+.||+|||+++.
T Consensus       174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~  233 (640)
T PRK07573        174 QALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGGYGN  233 (640)
T ss_pred             HHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCCccc
Confidence            5666778888999999999999987665543 332   244  35889999999999763

>PRK07190 hypothetical protein; Provisional

Probab=99.34  E-value=2e-11  Score=122.64  Aligned_cols=67  Identities=15%  Similarity=0.310  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSL  271 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~  271 (473)
                      ..+.+.|.+.+++.|++++++++|+++..+++++.+.+.+|++++|++||.|+|..| .+.+.+|++.
T Consensus       109 ~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S-~vR~~lgi~f  175 (487)
T PRK07190        109 SYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS-FVRNHFNVPF  175 (487)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH-HHHHHcCCCc
Confidence            445667777888899999999999999998888877777777899999999999997 6778888764

>TIGR00275 flavoprotein, HI0933 family

Probab=99.33  E-value=1.1e-10  Score=114.67  Aligned_cols=77  Identities=25%  Similarity=0.246  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh----------HHHHHhcCCCCC
Q psy7710         203 WGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA----------DEMALKSGCSLE  272 (473)
Q Consensus       203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s----------~~l~~~~g~~~~  272 (473)
                      ...+.+.+.+.+++.|++++++++|+++..+++.+.|++++ .++.+|.||+|+|.++          -.+++.+|+.+.
T Consensus       104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~~~-~~i~ad~VIlAtG~~s~p~~gs~G~g~~la~~lG~~i~  182 (400)
T TIGR00275       104 AADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVETSG-GEYEADKVILATGGLSYPQLGSTGDGYEIAESLGHTIV  182 (400)
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEECC-cEEEcCEEEECCCCcccCCCCCCcHHHHHHHHCCCCEe
Confidence            35688889999999999999999999998877778887754 4899999999999865          578888987642


Q ss_pred             CceeeeeeE
Q psy7710         273 PAIVPFRGE  281 (473)
Q Consensus       273 ~~~~p~~g~  281 (473)
                       +..|..-+
T Consensus       183 -~~~P~l~~  190 (400)
T TIGR00275       183 -PPVPALVP  190 (400)
T ss_pred             -cccceEeE
Confidence             34554333

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK08013 oxidoreductase; Provisional

Probab=99.33  E-value=2.6e-11  Score=119.70  Aligned_cols=70  Identities=9%  Similarity=0.107  Sum_probs=59.6

Q ss_pred             eeHHHHHHHHHHHHHHc-CcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710         201 VDWGLVTRVMGEEFCEL-GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSL  271 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~  271 (473)
                      +.-..+.+.|.+.+.+. |++++++++|+++..+++.+.|+..+|.+++||.||-|.|.+| .+.+.+|++.
T Consensus       108 i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVgADG~~S-~vR~~~~~~~  178 (400)
T PRK08013        108 IENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVGADGANS-WLRNKADIPL  178 (400)
T ss_pred             EEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEEeCCCCc-HHHHHcCCCc
Confidence            45566788888888775 8999999999999988888888888888899999999999998 6778888764

>PRK10015 oxidoreductase; Provisional

Probab=99.32  E-value=2e-11  Score=121.04  Aligned_cols=68  Identities=16%  Similarity=0.224  Sum_probs=54.6

Q ss_pred             eeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEE-EEcCCCcEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710         201 VDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQADEMALKSGCS  270 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~  270 (473)
                      +.-..+-+.|.+.+++.|++++.+++|+++..+++.+. +.+.+ .+++||.||.|+|..+ .+.+.+|+.
T Consensus       105 v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~-~~i~A~~VI~AdG~~s-~v~~~lg~~  173 (429)
T PRK10015        105 VLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGD-DILEANVVILADGVNS-MLGRSLGMV  173 (429)
T ss_pred             eehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCC-eEEECCEEEEccCcch-hhhcccCCC
Confidence            44566778899999999999999999999987766654 55544 4899999999999987 577777764

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=99.32  E-value=8.4e-11  Score=121.36  Aligned_cols=185  Identities=12%  Similarity=0.043  Sum_probs=99.5

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccC-CCchhHHHHHHHhHHHHHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYY-KPGTLKAKLCVEGMNLAYEYFD  134 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  134 (473)
                      .++||+|||+|.+|+++|+.+++.  |.+|+||||.. +.+++|..+.|.+...... ..+.... .       +.+..+
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~~--G~~V~lveK~~-~~~g~t~~a~Ggi~a~~~~~~~Ds~e~-~-------~~D~~~   96 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVEL--GYKTACISKLF-PTRSHTVAAQGGINAALGNMTEDDWRW-H-------AYDTVK   96 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHHc--CCcEEEEeccC-CCCCCchhhcCCeeEEecCCCCCCHHH-H-------HHHHHH
Confidence            568999999999999999999999  99999999984 5555555555544332111 1111100 0       001100


Q ss_pred             hcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHH-hhcCCcc--------cceeEecCCccceeHHH
Q psy7710         135 KRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIK-TIEPYCK--------GVKAIHSPNTGIVDWGL  205 (473)
Q Consensus       135 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~p~~~--------~~~~~~~~~~~~~~~~~  205 (473)
                      .-. .......+..    -.+...+.++++.++|+ .+.......+. ..+....        .....+. .  --....
T Consensus        97 ~g~-~~~d~~lv~~----l~~~s~~~i~~L~~~Gv-~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~-~--d~tG~~  167 (617)
T PTZ00139         97 GSD-WLGDQDAIQY----MCREAPQAVLELESYGL-PFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAA-A--DRTGHA  167 (617)
T ss_pred             HhC-CCCCHHHHHH----HHHHHHHHHHHHHhcCC-ceEeCCCCcEeecccCcccccccCCCccceeeec-C--CCcHHH
Confidence            000 0000000000    01223344455555665 33221000000 0000000        0000010 0  012357


Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEE-cCCeEE-E---EcCCC--cEEEcCEEEEcCCcCh
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKE-NPESVT-I---STKQG--DHLESSYALVCAGLQA  260 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~-~~~~v~-v---~~~~g--~~i~ad~VV~aaG~~s  260 (473)
                      +...|.+.+++.|+++++++.++++.. +++.+. |   ...+|  ..+.|+.||+|||++.
T Consensus       168 i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  229 (617)
T PTZ00139        168 MLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGYG  229 (617)
T ss_pred             HHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence            888999999999999999999999987 455442 3   23455  3678999999999985

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.31  E-value=7.1e-11  Score=117.50  Aligned_cols=67  Identities=12%  Similarity=0.138  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHc-CcEEEeCceEEEEEEcCCeEEEEcCC--C-cEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710         203 WGLVTRVMGEEFCEL-GGEIRLNQQVESFKENPESVTISTKQ--G-DHLESSYALVCAGLQADEMALKSGCS  270 (473)
Q Consensus       203 ~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~v~v~~~~--g-~~i~ad~VV~aaG~~s~~l~~~~g~~  270 (473)
                      ...+.+.|.+.+.+. |++++++++|+++..+++.+.|++.+  + .+++||.||.|.|.+| .+.+.+++.
T Consensus       120 ~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgADG~~S-~vR~~~~~~  190 (415)
T PRK07364        120 HQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAADGARS-PIRQAAGIK  190 (415)
T ss_pred             cHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEeCCCCc-hhHHHhCCC
Confidence            345777788877764 79999999999998888777776542  2 3699999999999998 567777765

>PRK06175 L-aspartate oxidase; Provisional

Probab=99.31  E-value=7.1e-11  Score=117.14  Aligned_cols=181  Identities=17%  Similarity=0.139  Sum_probs=93.0

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK  135 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (473)
                      .++||+|||+|.+|+++|+.++ .  |.+|+||||.+. .++.|..+.|.+....  ..+.. ..       .+.+..+.
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~-~--G~~V~lleK~~~-~gg~s~~a~ggi~~~~--~~d~~-~~-------~~~d~~~~   68 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR-K--DLKILMVSKGKL-NECNTYLAQGGISVAR--NKDDI-TS-------FVEDTLKA   68 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc-c--CCCEEEEecCCC-CCCchHHHhHhheeCC--CCCCH-HH-------HHHHHHHH
Confidence            4689999999999999999974 6  899999999854 4444444444333211  11111 00       11111100


Q ss_pred             cCCCCcccC-eEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHH
Q psy7710         136 RNIPYKKCG-KLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEF  214 (473)
Q Consensus       136 ~~~~~~~~g-~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  214 (473)
                      -.  +..+. .+..    -.+...+.++++..+|+ .+..-............ ...-.+.+.  ......+...|.+.+
T Consensus        69 g~--~~~d~~lv~~----~~~~s~e~i~wL~~~Gv-~f~~~~~~~~~~~~g~~-~~~r~~~~~--~~~g~~l~~~L~~~~  138 (433)
T PRK06175         69 GQ--YENNLEAVKI----LANESIENINKLIDMGL-NFDKDEKELSYTKEGAH-SVNRIVHFK--DNTGKKVEKILLKKV  138 (433)
T ss_pred             hC--CCCCHHHHHH----HHHHHHHHHHHHHHcCC-ccccCCCceeeeccCcc-ccCeEEecC--CCChHHHHHHHHHHH
Confidence            00  00000 0000    01122334445555555 22211000000000000 000111111  112356788888888


Q ss_pred             HH-cCcEEEeCceEEEEEEcCCeE-EEE-cCCCc--EEEcCEEEEcCCcCh
Q psy7710         215 CE-LGGEIRLNQQVESFKENPESV-TIS-TKQGD--HLESSYALVCAGLQA  260 (473)
Q Consensus       215 ~~-~Gv~i~~~~~V~~i~~~~~~v-~v~-~~~g~--~i~ad~VV~aaG~~s  260 (473)
                      ++ .|++|+++++|++|..+++.+ .|. +.++.  .+.|+.||+|||+++
T Consensus       139 ~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~  189 (433)
T PRK06175        139 KKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGIG  189 (433)
T ss_pred             HhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCccc
Confidence            75 599999999999998766543 222 22332  589999999999865

>PRK09126 hypothetical protein; Provisional

Probab=99.30  E-value=1.1e-10  Score=115.09  Aligned_cols=69  Identities=13%  Similarity=0.172  Sum_probs=55.7

Q ss_pred             eHHHHHHHHHHHHH-HcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710         202 DWGLVTRVMGEEFC-ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSL  271 (473)
Q Consensus       202 ~~~~~~~~l~~~~~-~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~  271 (473)
                      ....+.+.|.+.+. ..|++++++++|+++..+++.+.|++++|.+++||.||.|.|.+| .+.+.+|++.
T Consensus       108 ~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S-~vr~~~g~~~  177 (392)
T PRK09126        108 PNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAADSRFS-ATRRQLGIGA  177 (392)
T ss_pred             eHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEeCCCCc-hhhHhcCCCc
Confidence            33456666777664 469999999999999988888888888888899999999999988 5777777653

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.30  E-value=1.8e-11  Score=109.01  Aligned_cols=59  Identities=24%  Similarity=0.339  Sum_probs=46.4

Q ss_pred             eHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         202 DWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       202 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      ....+.+.+.+.+++.+++++++++|+++..++++|.|++.++.+++||.||+|+|.++
T Consensus        80 ~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~  138 (203)
T PF13738_consen   80 SGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYS  138 (203)
T ss_dssp             BHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSC
T ss_pred             CHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccC
Confidence            34557777888888899999999999999999988999999987899999999999874

...

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.30  E-value=6e-10  Score=110.11  Aligned_cols=70  Identities=14%  Similarity=0.183  Sum_probs=57.0

Q ss_pred             eeHHHHHHHHHHHHHH-cCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710         201 VDWGLVTRVMGEEFCE-LGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSL  271 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~  271 (473)
                      ++...+.+.|.+.+.+ .|++++++++|+++..+++++.|++.+|..+++|.||.|+|.+|. +.+.++++.
T Consensus       109 ~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~-vr~~~~~~~  179 (395)
T PRK05732        109 VELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSA-LREALGIDW  179 (395)
T ss_pred             EEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChh-hHHhhCCCc
Confidence            3334566777777765 489999999999999888888888888878999999999999984 778887654

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=99.29  E-value=1.8e-10  Score=118.69  Aligned_cols=183  Identities=13%  Similarity=0.074  Sum_probs=95.9

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeecc-CCCchhHHHHHHHhHHHHHHHHHhcC
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIY-YKPGTLKAKLCVEGMNLAYEYFDKRN  137 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (473)
                      ||+|||+|++|+++|+.++++  |.+|+||||.. ..++.|..+.|.+..... ..+......+.       .+......
T Consensus         1 DVlVVG~G~AGl~AA~~aae~--G~~V~lleK~~-~~~g~s~~a~Gg~~~~~~~~~~~d~~e~~~-------~d~~~~~~   70 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKA--GLNTAVISKVY-PTRSHTVAAQGGMAAALGNVDPDDSWEWHA-------YDTVKGSD   70 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHC--CCcEEEEeccC-CCCCcchhhccCeEeecCCCCCCccHHHHH-------HHHHHHhC
Confidence            799999999999999999999  99999999985 444444444443332221 11111100000       00000000


Q ss_pred             CCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHh-hcCCcccceeEecCCccceeHHHHHHHHHHHHHH
Q psy7710         138 IPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKT-IEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCE  216 (473)
Q Consensus       138 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  216 (473)
                      ...++ ..+..    -.+...+.++++.++|+ .+.......... .+.........+..   ......+...|.+.+++
T Consensus        71 ~~~d~-~~v~~----~~~~s~~~i~~L~~~Gv-~f~~~~~g~~~~~~~gg~~~~r~~~~~---~~~G~~i~~~L~~~~~~  141 (566)
T TIGR01812        71 YLADQ-DAVEY----MCQEAPKAILELEHWGV-PFSRTPDGRIAQRPFGGHSKDRTCYAA---DKTGHALLHTLYEQCLK  141 (566)
T ss_pred             CCCCH-HHHHH----HHHHHHHHHHHHHHcCC-cceecCCCcEeeccccccccCeeEECC---CCCHHHHHHHHHHHHHH
Confidence            00000 00000    01112233445555665 222111100000 00000000111111   11234677888888888


Q ss_pred             cCcEEEeCceEEEEEEcCCeEE-E---EcCCCc--EEEcCEEEEcCCcCh
Q psy7710         217 LGGEIRLNQQVESFKENPESVT-I---STKQGD--HLESSYALVCAGLQA  260 (473)
Q Consensus       217 ~Gv~i~~~~~V~~i~~~~~~v~-v---~~~~g~--~i~ad~VV~aaG~~s  260 (473)
                      .|+++++++.|++|..+++.+. |   ...+|.  .+.|+.||+|+|+++
T Consensus       142 ~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~  191 (566)
T TIGR01812       142 LGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG  191 (566)
T ss_pred             cCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence            8999999999999987766543 2   234553  589999999999986

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.29  E-value=2.6e-11  Score=121.97  Aligned_cols=64  Identities=25%  Similarity=0.397  Sum_probs=53.9

Q ss_pred             eEecCCccceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCC-eEEEEcCCCcEEEcCEEEEcCCc
Q psy7710         192 AIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPE-SVTISTKQGDHLESSYALVCAGL  258 (473)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~v~v~~~~g~~i~ad~VV~aaG~  258 (473)
                      +++.|.+|.   ..++++|.+.++++|++|+++++|++|..+++ ++++.+.+|..+++|.||.+...
T Consensus       215 G~~~p~GG~---~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~  279 (487)
T COG1233         215 GVFYPRGGM---GALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP  279 (487)
T ss_pred             CeeeeeCCH---HHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCch
Confidence            455555554   78999999999999999999999999998775 57788888767899999998877

>TIGR00551 nadB L-aspartate oxidase

Probab=99.29  E-value=1.4e-10  Score=117.15  Aligned_cols=183  Identities=11%  Similarity=0.043  Sum_probs=99.1

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHhc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKR  136 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (473)
                      ++||+|||+|++|+++|+.+++.  |. |+||||.+ ..+++|..+.|.+..... ..++.. .       .+.++.+..
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~~--G~-V~lleK~~-~~~g~s~~a~Ggi~~~~~-~~ds~e-~-------~~~d~~~~~   68 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALADQ--GR-VIVLSKAP-VTEGNSFYAQGGIAAVLA-ETDSID-S-------HVEDTLAAG   68 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHhC--CC-EEEEEccC-CCCCcchhcCcCeeeeec-CCCCHH-H-------HHHHHHHhc
Confidence            47999999999999999999998  87 99999984 555555555554443221 111110 0       111111100


Q ss_pred             CCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHH-hhcCCcccceeEecCCccceeHHHHHHHHHHHHH
Q psy7710         137 NIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIK-TIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC  215 (473)
Q Consensus       137 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  215 (473)
                      . .......+.    .-.+...+.++++..+|+ .+......... ...... ...-++..  +......+...|.+.++
T Consensus        69 ~-~~~d~~~v~----~~~~~~~~~i~~L~~~Gv-~f~~~~~g~~~~~~~gg~-~~~r~~~~--~~~~G~~l~~~L~~~~~  139 (488)
T TIGR00551        69 A-GICDREAVE----FVVSDARSAVQWLVDQGV-LFDRHEQGSYALTREGGH-SYRRILHA--ADATGREVITTLVKKAL  139 (488)
T ss_pred             C-CcCCHHHHH----HHHHhHHHHHHHHHHcCC-cceeCCCCCccccCCCCc-CCCeEEEe--CCCCHHHHHHHHHHHHH
Confidence            0 000000000    001222344555666665 22211100000 000000 00011111  11234678888999888


Q ss_pred             H-cCcEEEeCceEEEEEEcCCeEE-EEc--CCC-cEEEcCEEEEcCCcChH
Q psy7710         216 E-LGGEIRLNQQVESFKENPESVT-IST--KQG-DHLESSYALVCAGLQAD  261 (473)
Q Consensus       216 ~-~Gv~i~~~~~V~~i~~~~~~v~-v~~--~~g-~~i~ad~VV~aaG~~s~  261 (473)
                      + .|++|++++.|++|..+++.+. |..  .++ ..++|+.||+|+|+++.
T Consensus       140 ~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~  190 (488)
T TIGR00551       140 NHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGK  190 (488)
T ss_pred             hcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence            7 6999999999999987665443 333  222 36899999999999974

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=99.28  E-value=1.3e-10  Score=119.27  Aligned_cols=182  Identities=10%  Similarity=-0.021  Sum_probs=98.1

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK  135 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (473)
                      .++||+|||+|++|+++|+.+++.++|.+|+|+||.. +.+++|..+.|.+..... ..++. ..+       +.+..+.
T Consensus         3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~-~~~g~s~~a~Gg~~~~~~-~~ds~-e~~-------~~d~~~~   72 (582)
T PRK09231          3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVY-PMRSHTVAAEGGSAAVAQ-DHDSF-DYH-------FHDTVAG   72 (582)
T ss_pred             eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccC-CCCCChhhccchhhhhcC-CCCCH-HHH-------HHHHHHh
Confidence            4689999999999999999999885568999999984 444555555443332111 11111 000       0111000


Q ss_pred             cCCCCcccCeEEEEeCc-----ChhhHHHHHHHHHhCCCCcceeeCHHHHH-hhcCCcccceeEecCCccceeHHHHHHH
Q psy7710         136 RNIPYKKCGKLIVALNE-----QLEPLHDLYERSIQNNVKDVRLVSAEEIK-TIEPYCKGVKAIHSPNTGIVDWGLVTRV  209 (473)
Q Consensus       136 ~~~~~~~~g~l~~~~~~-----~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~  209 (473)
                       + .+.        .++     -.+...+.++++.++|+ .+..-....+. ..+....... .+...+  -....+...
T Consensus        73 -g-~~~--------~d~~~v~~~~~~s~~~i~~L~~~Gv-~f~~~~~g~~~~~~~gg~~~~r-~~~~~~--~~G~~i~~~  138 (582)
T PRK09231         73 -G-DWL--------CEQDVVEYFVHHCPTEMTQLEQWGC-PWSRKPDGSVNVRRFGGMKIER-TWFAAD--KTGFHMLHT  138 (582)
T ss_pred             -c-ccC--------CCHHHHHHHHHHHHHHHHHHHHcCC-CcccCCCCceeeeccccccCCe-eEecCC--CcHHHHHHH
Confidence             0 000        000     01222344455566666 22211000000 0000000000 111111  013457777


Q ss_pred             HHHHHHHc-CcEEEeCceEEEEEEcCCeEE----EEcCCC--cEEEcCEEEEcCCcChH
Q psy7710         210 MGEEFCEL-GGEIRLNQQVESFKENPESVT----ISTKQG--DHLESSYALVCAGLQAD  261 (473)
Q Consensus       210 l~~~~~~~-Gv~i~~~~~V~~i~~~~~~v~----v~~~~g--~~i~ad~VV~aaG~~s~  261 (473)
                      |.+.+.+. |++++.++.|+++..+++.+.    +...+|  ..+.|+.||+|+|+++.
T Consensus       139 L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~  197 (582)
T PRK09231        139 LFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR  197 (582)
T ss_pred             HHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcC
Confidence            87777664 899999999999997766543    233455  36889999999999873

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.28  E-value=1.7e-10  Score=118.28  Aligned_cols=185  Identities=14%  Similarity=0.057  Sum_probs=96.9

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeecc--CCCchhHHHHHHHhHHHHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIY--YKPGTLKAKLCVEGMNLAYEYF  133 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  133 (473)
                      .++||+|||+|.+|+++|+.+++.  |.+|+||||.+ ..++.|..+.|.+.....  ..+......+.       .+..
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae~--G~~V~lveK~~-~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~-------~d~~   73 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIASA--GFKVAVISKVF-PTRSHSAAAEGGIAAYIPGNSDPNDNPDYMT-------YDTV   73 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHHC--CCcEEEEEccC-CCCCcchhhccchhhhccccCCCcccHHHHH-------HHHH
Confidence            468999999999999999999999  99999999985 444444444443321110  01111000010       0000


Q ss_pred             HhcCCCCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHH-HhhcCCcccceeEecCCccceeHHHHHHHHH
Q psy7710         134 DKRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEI-KTIEPYCKGVKAIHSPNTGIVDWGLVTRVMG  211 (473)
Q Consensus       134 ~~~~~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~  211 (473)
                      .. +- +..+..+    -. -.+...+.++++..+|+ .+..-....+ ...+.........+..   .-....++..|.
T Consensus        74 ~~-g~-~~~d~~~----v~~~~~~s~~~i~~L~~~Gv-~f~~~~~g~~~~~~~gg~~~~r~~~~~---~~~G~~i~~~L~  143 (566)
T PRK06452         74 KG-GD-YLVDQDA----AELLSNKSGEIVMLLERWGA-LFNRQPDGRVAVRYFGGQTYPRTRFVG---DKTGMALLHTLF  143 (566)
T ss_pred             Hh-hc-cCCCHHH----HHHHHHHHHHHHHHHHHCCC-ccccCCCCcEeccCCcCccCCeeEecC---CCCHHHHHHHHH
Confidence            00 00 0000000    00 01222334445555665 2221100000 0000000000111111   012356788888


Q ss_pred             HHHHHcCcEEEeCceEEEEEEcCCeEE-EE--c-CCC--cEEEcCEEEEcCCcCh
Q psy7710         212 EEFCELGGEIRLNQQVESFKENPESVT-IS--T-KQG--DHLESSYALVCAGLQA  260 (473)
Q Consensus       212 ~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~--~-~~g--~~i~ad~VV~aaG~~s  260 (473)
                      +.+.+.|+++++++.++++..+++.+. |.  . .++  ..+.|+.||+|||+++
T Consensus       144 ~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  198 (566)
T PRK06452        144 ERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG  198 (566)
T ss_pred             HHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence            888888999999999999998766543 33  2 233  3578999999999886

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=99.28  E-value=3.5e-11  Score=120.73  Aligned_cols=152  Identities=19%  Similarity=0.243  Sum_probs=91.7

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC-cccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK-ELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFD  134 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~-~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (473)
                      .++||+|||||++|+.+|+.+++.  |.+|+++|+.. .+|.-+...+.|.+..      ..+..++            .
T Consensus         3 ~~yDVIVVGGGpAG~eAA~~aAR~--G~kV~LiE~~~d~iG~m~CnpsiGG~ak------g~lvrEi------------d   62 (618)
T PRK05192          3 EEYDVIVVGGGHAGCEAALAAARM--GAKTLLLTHNLDTIGQMSCNPAIGGIAK------GHLVREI------------D   62 (618)
T ss_pred             ccceEEEECchHHHHHHHHHHHHc--CCcEEEEecccccccccCCccccccchh------hHHHHHH------------H
Confidence            469999999999999999999999  99999999873 3442111111111110      0000000            0


Q ss_pred             hcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHH
Q psy7710         135 KRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEF  214 (473)
Q Consensus       135 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  214 (473)
                      .++-                 .+.   ......++ ....++...          -.+++.+. +.+|...+...+.+.+
T Consensus        63 alGg-----------------~~g---~~~d~~gi-q~r~ln~sk----------GpAV~s~R-aQiDr~ly~kaL~e~L  110 (618)
T PRK05192         63 ALGG-----------------EMG---KAIDKTGI-QFRMLNTSK----------GPAVRALR-AQADRKLYRAAMREIL  110 (618)
T ss_pred             hcCC-----------------HHH---HHHhhccC-ceeecccCC----------CCceeCcH-HhcCHHHHHHHHHHHH
Confidence            0000                 000   00111111 111111100          01233332 3678888999999888


Q ss_pred             HHc-CcEEEeCceEEEEEEcCCeE-EEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         215 CEL-GGEIRLNQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       215 ~~~-Gv~i~~~~~V~~i~~~~~~v-~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      .+. |++++ +..|.++..+++.+ .|.+.+|..+.|+.||+|+|.|+
T Consensus       111 ~~~~nV~I~-q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTFL  157 (618)
T PRK05192        111 ENQPNLDLF-QGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTFL  157 (618)
T ss_pred             HcCCCcEEE-EeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcch
Confidence            865 78885 67799988776665 48888888999999999999764

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.27  E-value=2.8e-10  Score=117.35  Aligned_cols=178  Identities=11%  Similarity=0.026  Sum_probs=98.6

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccC-CCchhHHHHHHHh---------
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYY-KPGTLKAKLCVEG---------  125 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~-~~~~~~~~~~~~~---------  125 (473)
                      .++||+|||+|++|+++|+.+++.  |.+|+||||.. +.+++|..+.|.+...... ..+... ....+.         
T Consensus        11 ~~~DVvVIG~G~AGl~AAl~Aa~~--G~~V~lveK~~-~~~g~s~~a~Ggi~a~~~~~~~Ds~e-~~~~d~~~~g~~~~d   86 (598)
T PRK09078         11 HKYDVVVVGAGGAGLRATLGMAEA--GLKTACITKVF-PTRSHTVAAQGGISASLGNMGEDDWR-WHMYDTVKGSDWLGD   86 (598)
T ss_pred             cccCEEEECccHHHHHHHHHHHHc--CCcEEEEEccC-CCCcchhhhcCCcccccCCCCCCCHH-HHHHHHHHhccCCCC
Confidence            468999999999999999999999  89999999984 4445555554444322111 111110 000000         


Q ss_pred             HHHHHHHHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHH-hhcCCcc-------cceeEecCC
Q psy7710         126 MNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIK-TIEPYCK-------GVKAIHSPN  197 (473)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~p~~~-------~~~~~~~~~  197 (473)
                      .+.++.+                     .+...+.++++.++|+ .+......... ..+....       ...-.+...
T Consensus        87 ~~lv~~l---------------------~~~s~~~i~~L~~~Gv-~f~~~~~G~~~~~~~gg~~~~~~~~~~~~R~~~~~  144 (598)
T PRK09078         87 QDAIEYM---------------------CREAPAAVYELEHYGV-PFSRTEEGKIYQRPFGGMTTNYGKGPPAQRTCAAA  144 (598)
T ss_pred             HHHHHHH---------------------HHHHHHHHHHHHHcCC-cceecCCCceeecccCceecccCCCCccceeEecC
Confidence            0011111                     1222333444555565 22211100000 0000000       000000010


Q ss_pred             ccceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcC-CeEE-EE---cCCC--cEEEcCEEEEcCCcChH
Q psy7710         198 TGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENP-ESVT-IS---TKQG--DHLESSYALVCAGLQAD  261 (473)
Q Consensus       198 ~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~v~-v~---~~~g--~~i~ad~VV~aaG~~s~  261 (473)
                      +  .....++..|.+.+++.|+++++++.|++|..++ +.+. |.   ..+|  ..+.|+.||+|||++..
T Consensus       145 d--~tG~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~  213 (598)
T PRK09078        145 D--RTGHAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGR  213 (598)
T ss_pred             C--CCHHHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcc
Confidence            0  1235688889998988999999999999998765 4332 32   3455  36789999999999864

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=99.27  E-value=2.6e-10  Score=117.34  Aligned_cols=67  Identities=15%  Similarity=0.159  Sum_probs=52.3

Q ss_pred             ccceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeE---EEEcCCC-cEEEc-CEEEEcCCcChHHHH
Q psy7710         198 TGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESV---TISTKQG-DHLES-SYALVCAGLQADEMA  264 (473)
Q Consensus       198 ~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v---~v~~~~g-~~i~a-d~VV~aaG~~s~~l~  264 (473)
                      ...+++..++..|.+.+++.|++|+++++|++|..+++.+   .+++.++ ..++| +.||+|+|+|+.++.
T Consensus       211 ~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~  282 (581)
T PRK06134        211 MHLVNGNALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPHDPA  282 (581)
T ss_pred             CcccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCcccCHH
Confidence            3446778899999999999999999999999998766544   2333444 25788 999999999975443

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=99.27  E-value=3.6e-10  Score=111.91  Aligned_cols=68  Identities=9%  Similarity=0.092  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHH-cCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710         203 WGLVTRVMGEEFCE-LGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSL  271 (473)
Q Consensus       203 ~~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~  271 (473)
                      -..+.+.|.+.+.+ .|++++++++|+++..+++.+.|++.+|++++||.||.|.|.+| .+.+.+|++.
T Consensus       110 ~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S-~vR~~~~~~~  178 (405)
T PRK08850        110 NRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANS-WLRRQMDIPL  178 (405)
T ss_pred             HHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCC-hhHHHcCCCe
Confidence            34566677777766 47999999999999988888888888888899999999999997 6777787763

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=99.27  E-value=2.4e-10  Score=117.13  Aligned_cols=180  Identities=11%  Similarity=-0.038  Sum_probs=98.4

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeecc--CCCchhHHHHHHHh-----HHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIY--YKPGTLKAKLCVEG-----MNL  128 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~--~~~~~~~~~~~~~~-----~~~  128 (473)
                      .++||+|||+|++|+++|+.++++++|.+|+|+||.. ..++.+..+.|.+.....  ..++.+.......+     .+.
T Consensus         2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~-~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~l   80 (580)
T TIGR01176         2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVY-PMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDV   80 (580)
T ss_pred             cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccC-CCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHH
Confidence            3589999999999999999999875568999999984 444455444443322111  11111111000000     000


Q ss_pred             HHHHHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHH-HhhcCCcccceeEecCCccceeHHHHH
Q psy7710         129 AYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEI-KTIEPYCKGVKAIHSPNTGIVDWGLVT  207 (473)
Q Consensus       129 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~  207 (473)
                      .+.+                     .+...+.++++.++|+ .+..-+...+ ...+.... ..-.+...+  -....+.
T Consensus        81 v~~l---------------------~~~s~~~i~~L~~~Gv-~f~~~~~g~~~~~~~gg~~-~~R~~~~~~--~~G~~i~  135 (580)
T TIGR01176        81 VEYF---------------------VAEAPKEMVQLEHWGC-PWSRKPDGRVNVRRFGGMK-KERTWFAAD--KTGFHML  135 (580)
T ss_pred             HHHH---------------------HHHhHHHHHHHHHcCC-ccEecCCCceeeeccCCcc-CCeeeecCC--CCHHHHH
Confidence            0011                     1222334445555665 2221110000 00000000 000111111  1235678


Q ss_pred             HHHHHHHHH-cCcEEEeCceEEEEEEcCCeEE----EEcCCC--cEEEcCEEEEcCCcChH
Q psy7710         208 RVMGEEFCE-LGGEIRLNQQVESFKENPESVT----ISTKQG--DHLESSYALVCAGLQAD  261 (473)
Q Consensus       208 ~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~v~----v~~~~g--~~i~ad~VV~aaG~~s~  261 (473)
                      ..|.+.+.+ .|++++.++.++++..+++.+.    +...+|  ..+.|+.||+|||+++.
T Consensus       136 ~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~  196 (580)
T TIGR01176       136 HTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGR  196 (580)
T ss_pred             HHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCcc
Confidence            888887776 4899999999999997766543    233455  46889999999999874

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK08163 salicylate hydroxylase; Provisional

Probab=99.26  E-value=2.6e-10  Score=112.73  Aligned_cols=69  Identities=16%  Similarity=0.244  Sum_probs=56.5

Q ss_pred             ceeHHHHHHHHHHHHHHcC-cEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcC
Q psy7710         200 IVDWGLVTRVMGEEFCELG-GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSG  268 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g  268 (473)
                      .++...+.+.|.+.+.+.+ ++++++++|+++..+++++.+++.+|.+++||.||.|.|.+|.......|
T Consensus       105 ~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~~r~~~~g  174 (396)
T PRK08163        105 VIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSVVRQSLVG  174 (396)
T ss_pred             EEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECCCcChHHHhhccC
Confidence            3566778888998887765 99999999999998888888888888789999999999999854433334

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=99.26  E-value=2.3e-10  Score=117.26  Aligned_cols=69  Identities=16%  Similarity=0.393  Sum_probs=54.5

Q ss_pred             eHHHHHHHHHHHHHHc-CcEEEeCceEEEEEEcCCeEEEEcC--CC--cEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710         202 DWGLVTRVMGEEFCEL-GGEIRLNQQVESFKENPESVTISTK--QG--DHLESSYALVCAGLQADEMALKSGCSL  271 (473)
Q Consensus       202 ~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~v~v~~~--~g--~~i~ad~VV~aaG~~s~~l~~~~g~~~  271 (473)
                      +-..+.+.|.+.+.+. |++|+++++|++++.+++++.|+..  +|  .+++||+||.|.|.+| .+.+.+|+..
T Consensus       111 ~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVgADG~~S-~vR~~lg~~~  184 (538)
T PRK06183        111 HQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVGCDGANS-FVRRTLGVPF  184 (538)
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEecCCCch-hHHHHcCCee
Confidence            3345667777777764 9999999999999998888876654  45  4799999999999998 5777777653

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=99.26  E-value=3e-10  Score=117.28  Aligned_cols=189  Identities=10%  Similarity=0.020  Sum_probs=98.3

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccC-CCchhHHHHHHHhHHHHHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYY-KPGTLKAKLCVEGMNLAYEYFD  134 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  134 (473)
                      .++||+|||+|++|+++|+.++++  |.+|+||||.. +.+++|..+.|.+...... ..++.. ...       .+..+
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae~--G~~VilveK~~-~~~g~s~~a~Ggi~a~~~~~~~Ds~e-~~~-------~Dt~~  117 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSEH--GFNTACITKLF-PTRSHTVAAQGGINAALGNMTEDDWR-WHM-------YDTVK  117 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHhc--CCcEEEEEcCC-CCCCchHHhhcCceeecCCCCCCCHH-HHH-------HHHHH
Confidence            468999999999999999999999  99999999984 5555555554444332111 122211 000       01100


Q ss_pred             hcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHH-HhhcCCccc-c--ee-E-ecCCccceeHHHHHH
Q psy7710         135 KRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEI-KTIEPYCKG-V--KA-I-HSPNTGIVDWGLVTR  208 (473)
Q Consensus       135 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~p~~~~-~--~~-~-~~~~~~~~~~~~~~~  208 (473)
                      .-. .......+..    -.+...+.++++.++|+ .+..-....+ ...+..... .  .+ . .....+.-....++.
T Consensus       118 ~g~-~~~d~~lv~~----l~~~s~~~i~~L~~~Gv-~F~~~~~g~~~~~~~gg~s~~~~~~g~~~r~~~~~d~tG~~i~~  191 (635)
T PLN00128        118 GSD-WLGDQDAIQY----MCREAPKAVIELENYGL-PFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHAMLH  191 (635)
T ss_pred             hhC-CCCCHHHHHH----HHHhHHHHHHHHHhCCC-ccccCCCCceeeccccccccccCCCcceeeeeccCCCCHHHHHH
Confidence            000 0000000000    01222334445555555 2211000000 000000000 0  00 0 000000112356888


Q ss_pred             HHHHHHHHcCcEEEeCceEEEEEEc-CCeEE-EE--c-CCC--cEEEcCEEEEcCCcChH
Q psy7710         209 VMGEEFCELGGEIRLNQQVESFKEN-PESVT-IS--T-KQG--DHLESSYALVCAGLQAD  261 (473)
Q Consensus       209 ~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~-v~--~-~~g--~~i~ad~VV~aaG~~s~  261 (473)
                      .|.+.+.+.|++|+.++.+.+|..+ ++.+. |.  . .+|  ..+.|+.||+|||++..
T Consensus       192 ~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~  251 (635)
T PLN00128        192 TLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYGR  251 (635)
T ss_pred             HHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCcc
Confidence            8999888899999999999998875 44432 32  2 345  36789999999999864

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.26  E-value=2.9e-10  Score=117.70  Aligned_cols=185  Identities=13%  Similarity=0.071  Sum_probs=97.4

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccC--CCchhHHHHHHHhHHHHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYY--KPGTLKAKLCVEGMNLAYEYF  133 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  133 (473)
                      .++||+|||+|++|+++|+.+++.  |.+|+||||.. +++++|..+.|.+......  ..++... .       +.+..
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae~--G~~V~lieK~~-~~~g~s~~a~Ggi~a~~~~~~~~ds~~~-~-------~~D~~   75 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARER--GLRVAVVCKSL-FGKAHTVMAEGGCAAAMGNVNPKDNWQV-H-------FRDTM   75 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHHC--CCCEEEEeccC-CCCCcceecCccceeeccCCCCCCCHHH-H-------HHHHH
Confidence            468999999999999999999999  99999999984 6656666665554433211  1111110 0       00100


Q ss_pred             HhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHh-hcCCcccceeEecCCccceeHHHHHHHHHH
Q psy7710         134 DKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKT-IEPYCKGVKAIHSPNTGIVDWGLVTRVMGE  212 (473)
Q Consensus       134 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~  212 (473)
                      +.-. .......+..    -.+...+.+.++.++|+ .+.......+.. .+.... ..-++...  ......++..|.+
T Consensus        76 ~~g~-~l~d~~~v~~----~~~~s~~~i~~L~~~Gv-~f~~~~~g~~~~~~~gg~~-~~r~~~~~--~~tG~~i~~~L~~  146 (626)
T PRK07803         76 RGGK-FLNNWRMAEL----HAKEAPDRVWELETYGA-LFDRTKDGRISQRNFGGHT-YPRLAHVG--DRTGLELIRTLQQ  146 (626)
T ss_pred             HHhc-cCCcHHHHHH----HHHHhHHHHHHHHHCCC-ceEecCCCceeeeecCCcc-cCeEEecC--CCcHHHHHHHHHH
Confidence            0000 0000000000    00112233344555565 332111000000 000000 00011100  1123567778888


Q ss_pred             HHHHc--------C-----cEEEeCceEEEEEEcCCeEE-E---EcCCC--cEEEcCEEEEcCCcCh
Q psy7710         213 EFCEL--------G-----GEIRLNQQVESFKENPESVT-I---STKQG--DHLESSYALVCAGLQA  260 (473)
Q Consensus       213 ~~~~~--------G-----v~i~~~~~V~~i~~~~~~v~-v---~~~~g--~~i~ad~VV~aaG~~s  260 (473)
                      .+++.        |     +++++++.|+++..+++.+. +   ...++  ..+.|+.||+|||++.
T Consensus       147 ~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~  213 (626)
T PRK07803        147 KIVSLQQEDHAELGDYEARIKVFAECTITELLKDGGRIAGAFGYWRESGRFVLFEAPAVVLATGGIG  213 (626)
T ss_pred             HHHhhhccccccccCCcCceEEEeCCEEEEEEEECCEEEEEEEEECCCCeEEEEEcCeEEECCCccc
Confidence            77766        7     99999999999987665442 2   23345  3589999999999864

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=99.25  E-value=2.8e-10  Score=113.62  Aligned_cols=70  Identities=11%  Similarity=0.092  Sum_probs=57.7

Q ss_pred             eeHHHHHHHHHHHHHHcC---cEEEeCceEEEEEEc-------CCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710         201 VDWGLVTRVMGEEFCELG---GEIRLNQQVESFKEN-------PESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS  270 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~~G---v~i~~~~~V~~i~~~-------~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~  270 (473)
                      +....+.+.|.+.+.+.+   ++++++++|+++..+       +..+.|++.+|++++||.||.|.|.+| .+.+.+|++
T Consensus       114 i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S-~vR~~~gi~  192 (437)
T TIGR01989       114 IENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNS-NVRKAANID  192 (437)
T ss_pred             EEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCC-hhHHHcCCC
Confidence            445667788888888765   899999999999742       456788888888999999999999998 677888887


Q ss_pred             C
Q psy7710         271 L  271 (473)
Q Consensus       271 ~  271 (473)
                      .
T Consensus       193 ~  193 (437)
T TIGR01989       193 T  193 (437)
T ss_pred             c
Confidence            5

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.25  E-value=3.6e-10  Score=115.63  Aligned_cols=177  Identities=12%  Similarity=-0.051  Sum_probs=96.6

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeecc--CCCchhHHHHHHHh-----HHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIY--YKPGTLKAKLCVEG-----MNL  128 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~--~~~~~~~~~~~~~~-----~~~  128 (473)
                      .++||+|||+|.+|++||+.+ +.  |.+|+|+||.....++++..+.|.+.....  ..++.....+...+     .+.
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~A-~~--G~~VilleK~~~~~gG~s~~a~gg~~~~~~~~d~~~~~~~d~~~~~~~~~d~~l   82 (543)
T PRK06263          6 MITDVLIIGSGGAGARAAIEA-ER--GKNVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKL   82 (543)
T ss_pred             eccCEEEECccHHHHHHHHHH-hc--CCCEEEEEccCCCCCccccccCceEEEeCCCCCCHHHHHHHHHHHhcCCCCHHH
Confidence            468999999999999999999 88  899999999843244556555555533221  11111111110000     001


Q ss_pred             HHHHHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhh-cCCcccceeEecCCccceeHHHHH
Q psy7710         129 AYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTI-EPYCKGVKAIHSPNTGIVDWGLVT  207 (473)
Q Consensus       129 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~  207 (473)
                      ++.+                     .+...+.++++..+|+ .+..-........ +.........+ ..  ......+.
T Consensus        83 v~~~---------------------~~~s~~~i~~L~~~Gv-~f~~~~~g~~~~~~~~g~~~~r~~~-~~--~~~G~~i~  137 (543)
T PRK06263         83 VEIL---------------------VKEAPKRLKDLEKFGA-LFDRTEDGEIAQRPFGGQSFNRTCY-AG--DRTGHEMM  137 (543)
T ss_pred             HHHH---------------------HHHHHHHHHHHHHcCC-cceeCCCCceeecccCCeEcCeEEE-CC--CCCHHHHH
Confidence            1111                     1122333444555555 2211000000000 00000000011 11  01135678


Q ss_pred             HHHHHHHHHcCcEEEeCceEEEEEEcCCe-E-EEE--c-CCC--cEEEcCEEEEcCCcCh
Q psy7710         208 RVMGEEFCELGGEIRLNQQVESFKENPES-V-TIS--T-KQG--DHLESSYALVCAGLQA  260 (473)
Q Consensus       208 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-v-~v~--~-~~g--~~i~ad~VV~aaG~~s  260 (473)
                      ..|.+.+++.|+++++++.|+++..++++ + .|.  . .+|  ..++|+.||+|||+++
T Consensus       138 ~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~  197 (543)
T PRK06263        138 MGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGAG  197 (543)
T ss_pred             HHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence            88888888899999999999999876543 3 232  2 455  3589999999999975

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=99.24  E-value=1.9e-10  Score=118.45  Aligned_cols=59  Identities=10%  Similarity=0.106  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEE-E--EcCCCc-EEEcC-EEEEcCCcChH
Q psy7710         203 WGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVT-I--STKQGD-HLESS-YALVCAGLQAD  261 (473)
Q Consensus       203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v--~~~~g~-~i~ad-~VV~aaG~~s~  261 (473)
                      ...+...|.+.+++.|++|+++++|++|..+++.+. |  ...++. .+.++ .||+|+|.++.
T Consensus       213 G~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~  276 (574)
T PRK12842        213 GNALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFSH  276 (574)
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCccc
Confidence            356788888889999999999999999998776443 3  333442 47785 79999999963

>PLN02815 L-aspartate oxidase

Probab=99.24  E-value=2.4e-10  Score=116.91  Aligned_cols=184  Identities=13%  Similarity=0.073  Sum_probs=96.5

Q ss_pred             CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHH
Q psy7710          55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFD  134 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (473)
                      ..++||+|||+|++|+++|+.+++.  | +|+||||.+ +.+++|..+.|.+..... ..++. ..+       +.+...
T Consensus        27 ~~~~DVlVVG~G~AGl~AAl~Aae~--G-~VvlleK~~-~~gg~s~~a~Ggi~a~~~-~~Ds~-e~~-------~~d~~~   93 (594)
T PLN02815         27 TKYFDFLVIGSGIAGLRYALEVAEY--G-TVAIITKDE-PHESNTNYAQGGVSAVLD-PSDSV-ESH-------MRDTIV   93 (594)
T ss_pred             ccccCEEEECccHHHHHHHHHHhhC--C-CEEEEECCC-CCCCcHHHhhcccccCCC-CCCCH-HHH-------HHHHHH
Confidence            3568999999999999999999998  8 899999984 555555555554432211 11111 000       111111


Q ss_pred             hcCCCCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHH-hhcCCcccceeEecCCccceeHHHHHHHHHH
Q psy7710         135 KRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIK-TIEPYCKGVKAIHSPNTGIVDWGLVTRVMGE  212 (473)
Q Consensus       135 ~~~~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~  212 (473)
                      ......++  .+    -. -.+...+.++++..+|+ .+..-...... ..+.... ..-++..  +......+...|.+
T Consensus        94 ~g~~~~d~--~l----v~~~~~~s~e~i~~L~~~Gv-~F~~~~~g~~~~~~~gg~s-~~R~~~~--~d~tG~~i~~~L~~  163 (594)
T PLN02815         94 AGAFLCDE--ET----VRVVCTEGPERVKELIAMGA-SFDHGEDGNLHLAREGGHS-HHRIVHA--ADMTGREIERALLE  163 (594)
T ss_pred             hccCCCcH--HH----HHHHHHHHHHHHHHHHHhCC-eeeecCCCCccccCCCCCc-cCceeec--CCCCHHHHHHHHHH
Confidence            00000000  00    00 01223344455555665 22211000000 0000000 0001111  11124567788888


Q ss_pred             HHHHc-CcEEEeCceEEEEEEcC-C----eEEEE---cCCC--cEEEcCEEEEcCCcChH
Q psy7710         213 EFCEL-GGEIRLNQQVESFKENP-E----SVTIS---TKQG--DHLESSYALVCAGLQAD  261 (473)
Q Consensus       213 ~~~~~-Gv~i~~~~~V~~i~~~~-~----~v~v~---~~~g--~~i~ad~VV~aaG~~s~  261 (473)
                      .+++. |++|++++.+++|..++ +    .+.|.   ..+|  ..+.|+.||+|||++..
T Consensus       164 ~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~  223 (594)
T PLN02815        164 AVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAGH  223 (594)
T ss_pred             HHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCccee
Confidence            88765 89999999999998743 3    22333   3355  35689999999998863

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.23  E-value=3.9e-10  Score=115.77  Aligned_cols=50  Identities=26%  Similarity=0.205  Sum_probs=41.7

Q ss_pred             CCCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceE
Q psy7710          54 SPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVV  106 (473)
Q Consensus        54 ~~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~  106 (473)
                      +..++||+|||+|++|+++|+.++++  |.+|+||||.. ..+++|..+.|.+
T Consensus         8 ~~~~~DVvVVG~G~AGl~AA~~aae~--G~~VivlEk~~-~~gG~t~~s~G~i   57 (584)
T PRK12835          8 FDREVDVLVVGSGGGGMTAALTAAAR--GLDTLVVEKSA-HFGGSTALSGGGI   57 (584)
T ss_pred             ccCcCCEEEECccHHHHHHHHHHHHC--CCcEEEEEcCC-CCCchHHHhCCCc
Confidence            44679999999999999999999999  99999999995 5556666665544

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.23  E-value=3.2e-10  Score=116.56  Aligned_cols=187  Identities=10%  Similarity=0.009  Sum_probs=98.0

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccC-CCchhHHHHHHHhHHHHHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYY-KPGTLKAKLCVEGMNLAYEYFD  134 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  134 (473)
                      .++||+|||+|.+|+++|+.+++.  |.+|+|+||.. +.+++|..+.|.+...... ..++. ..+.       .+..+
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~Aa~~--G~~V~lleK~~-~~~g~t~~a~Ggi~a~~~~~~~Ds~-e~~~-------~D~~~   74 (588)
T PRK08958          6 REFDAVVIGAGGAGMRAALQISQS--GQSCALLSKVF-PTRSHTVSAQGGITVALGNTHEDNW-EWHM-------YDTVK   74 (588)
T ss_pred             cccCEEEECccHHHHHHHHHHHHc--CCcEEEEEccC-CCCCccHHhhhhHhhhcCCCCCCCH-HHHH-------HHHHH
Confidence            468999999999999999999999  99999999984 4444444444443221110 11111 1010       01000


Q ss_pred             hcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHH-hhcCCcc------cceeEecCCccceeHHHHH
Q psy7710         135 KRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIK-TIEPYCK------GVKAIHSPNTGIVDWGLVT  207 (473)
Q Consensus       135 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~p~~~------~~~~~~~~~~~~~~~~~~~  207 (473)
                      .-. .......+..    -.+...+.++++.++|+ ++......... ..+....      ...-.+...+  -....++
T Consensus        75 ~g~-~~~d~~~v~~----~~~~s~~~i~~L~~~Gv-~f~~~~~g~~~~~~~gg~~~~~~~~~~~r~~~~~~--~~G~~i~  146 (588)
T PRK08958         75 GSD-YIGDQDAIEY----MCKTGPEAILELEHMGL-PFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAAD--RTGHALL  146 (588)
T ss_pred             HhC-CCCCHHHHHH----HHHHHHHHHHHHHHcCC-CcccCCCCceeecccccccccccccccceeEecCC--CCHHHHH
Confidence            000 0000000000    01223344455555665 22211000000 0000000      0000111110  1235688


Q ss_pred             HHHHHHHHHcCcEEEeCceEEEEEEc-CCeE-EEE---cCCC--cEEEcCEEEEcCCcChH
Q psy7710         208 RVMGEEFCELGGEIRLNQQVESFKEN-PESV-TIS---TKQG--DHLESSYALVCAGLQAD  261 (473)
Q Consensus       208 ~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v-~v~---~~~g--~~i~ad~VV~aaG~~s~  261 (473)
                      ..|.+.+.+.|+++++++.++++..+ ++.+ .|.   ..+|  ..+.|+.||+|||+++.
T Consensus       147 ~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~  207 (588)
T PRK08958        147 HTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAGR  207 (588)
T ss_pred             HHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccc
Confidence            88988888899999999999999875 4443 232   3345  35789999999999874

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=99.23  E-value=2.2e-10  Score=111.36  Aligned_cols=70  Identities=23%  Similarity=0.402  Sum_probs=54.6

Q ss_pred             ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEE--cC-CC--cEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710         200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTIS--TK-QG--DHLESSYALVCAGLQADEMALKSGCS  270 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~--~~-~g--~~i~ad~VV~aaG~~s~~l~~~~g~~  270 (473)
                      .++...+.+.|.+.+++.|++++++++|+++..+++++.+.  .. +|  .+++||.||.|.|.+| .+.+.++..
T Consensus       107 ~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S-~vR~~l~~~  181 (356)
T PF01494_consen  107 VIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHS-KVRKQLGID  181 (356)
T ss_dssp             EEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT--HHHHHTTGG
T ss_pred             hhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCccc-chhhhcccc
Confidence            35567788999999999999999999999999888776533  22 34  3689999999999998 677777754

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>TIGR02730 carot_isom carotene isomerase

Probab=99.22  E-value=4.3e-10  Score=114.08  Aligned_cols=67  Identities=18%  Similarity=0.292  Sum_probs=56.7

Q ss_pred             eeEecCCccceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCe-EEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         191 KAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      ++++.+.+|.   ..+++.|.+.++++|++|+++++|++|..++++ +.|++.+|.+++||.||+|+|.|.
T Consensus       219 ~g~~~~~gG~---~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~  286 (493)
T TIGR02730       219 GGINYPKGGV---GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWD  286 (493)
T ss_pred             ceEecCCChH---HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHH
Confidence            4566777766   578999999999999999999999999877554 568888887899999999999984

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=99.22  E-value=7.7e-10  Score=109.97  Aligned_cols=69  Identities=12%  Similarity=0.093  Sum_probs=50.9

Q ss_pred             ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEc---CCeEEEEcC---------CCcEEEcCEEEEcCCcChHHHHHhc
Q psy7710         200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKEN---PESVTISTK---------QGDHLESSYALVCAGLQADEMALKS  267 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~---~~~v~v~~~---------~g~~i~ad~VV~aaG~~s~~l~~~~  267 (473)
                      .++-..+-+.|.+.+.+.|++++.+ .++++...   ++.+.|++.         ++.+++||.||.|.|..| .+.+.+
T Consensus       128 ~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S-~vrr~l  205 (450)
T PLN00093        128 MVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANS-RVAKDI  205 (450)
T ss_pred             EecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCCcch-HHHHHh
Confidence            3566778888999999999999765 57777642   234444431         224799999999999998 677877


Q ss_pred             CCC
Q psy7710         268 GCS  270 (473)
Q Consensus       268 g~~  270 (473)
                      |+.
T Consensus       206 g~~  208 (450)
T PLN00093        206 DAG  208 (450)
T ss_pred             CCC
Confidence            765

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.22  E-value=5.2e-10  Score=115.24  Aligned_cols=184  Identities=13%  Similarity=0.082  Sum_probs=96.0

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCC---CeEEEEeccCcccCcccCCCcceEEeeccCC-CchhHHHHHHHhHHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPK---MKICLVEKEKELGMHQTGHNSGVVHAGIYYK-PGTLKAKLCVEGMNLAYE  131 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G---~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~  131 (473)
                      .++||+|||+|++|+++|+.++++  |   .+|+|+||.. +.++.|..+.|.+....... .++.. ...       .+
T Consensus         4 ~~~DVlVVG~G~AGl~AA~~Aa~~--G~~~~~V~lleK~~-~~~~~s~~a~Gg~~a~~~~~~~ds~e-~~~-------~d   72 (577)
T PRK06069          4 LKYDVVIVGSGLAGLRAAVAAAER--SGGKLSVAVVSKTQ-PMRSHSVSAEGGTAAVLYPEKGDSFD-LHA-------YD   72 (577)
T ss_pred             eecCEEEECccHHHHHHHHHHHHh--CCCCCcEEEEEccc-CCCCCceecccccceeeccccCCCHH-HHH-------HH
Confidence            468999999999999999999999  7   8999999984 44455554444333222110 11110 000       00


Q ss_pred             HHHhcCCCCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHH-hhcCCcccceeEecCCccceeHHHHHHH
Q psy7710         132 YFDKRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIK-TIEPYCKGVKAIHSPNTGIVDWGLVTRV  209 (473)
Q Consensus       132 ~~~~~~~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~  209 (473)
                      ......  +..+..+    -. -.+...+.++++.++|+ .+..-....+. ..+.........+.. +  -....++..
T Consensus        73 ~~~~g~--~~~d~~l----v~~~~~~s~~~i~~L~~~Gv-~f~~~~~G~~~~~~~~g~~~~r~~~~~-d--~tG~~i~~~  142 (577)
T PRK06069         73 TVKGSD--FLADQDA----VEVFVREAPEEIRFLDHWGV-PWSRRPDGRISQRPFGGMSFPRTTFAA-D--KTGFYIMHT  142 (577)
T ss_pred             HHHhhc--ccCCHHH----HHHHHHHHHHHHHHHHHcCC-eeEecCCCcEeeeecCCcccceeeEcC-C--CchHHHHHH
Confidence            000000  0000000    00 01122333455555665 22211000000 000000000011111 0  113557788


Q ss_pred             HHHHHHH-cCcEEEeCceEEEEEEcCCeEE----EEcCCCc--EEEcCEEEEcCCcCh
Q psy7710         210 MGEEFCE-LGGEIRLNQQVESFKENPESVT----ISTKQGD--HLESSYALVCAGLQA  260 (473)
Q Consensus       210 l~~~~~~-~Gv~i~~~~~V~~i~~~~~~v~----v~~~~g~--~i~ad~VV~aaG~~s  260 (473)
                      |.+.+.+ .|+++++++.|+++..+++.+.    +...++.  .+.|+.||+|||+++
T Consensus       143 L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~  200 (577)
T PRK06069        143 LYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG  200 (577)
T ss_pred             HHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence            8888766 6999999999999987665442    2334553  578999999999985

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.22  E-value=2.4e-10  Score=116.64  Aligned_cols=50  Identities=26%  Similarity=0.355  Sum_probs=41.0

Q ss_pred             CCCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEE
Q psy7710          54 SPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVH  107 (473)
Q Consensus        54 ~~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~  107 (473)
                      .+.++||||||+| +|+++|+.+++.  |.+|+||||.+.+ +|++..++|.+.
T Consensus        13 ~d~e~DvvvvG~G-~G~~aA~~a~~~--G~~v~v~Ek~~~~-GG~~~~~gG~~~   62 (564)
T PRK12845         13 RDTTVDLLVVGSG-TGMAAALAAHEL--GLSVLIVEKSSYV-GGSTARSGGAFW   62 (564)
T ss_pred             CCceeCEEEECCc-HHHHHHHHHHHC--CCcEEEEecCCCC-cCcccCcCCCEe
Confidence            3468999999999 899999999999  9999999998554 455556666553

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.22  E-value=1.9e-10  Score=114.48  Aligned_cols=58  Identities=16%  Similarity=0.110  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHHcCcE--EEeCceEEEEEEcCCeEEEEcCCC--c--EEEcCEEEEcCCcCh
Q psy7710         203 WGLVTRVMGEEFCELGGE--IRLNQQVESFKENPESVTISTKQG--D--HLESSYALVCAGLQA  260 (473)
Q Consensus       203 ~~~~~~~l~~~~~~~Gv~--i~~~~~V~~i~~~~~~v~v~~~~g--~--~i~ad~VV~aaG~~s  260 (473)
                      ...+.+.|.+.++..|+.  |+++++|++|...+++|.|++.++  .  +..+|.||+|+|.++
T Consensus       110 ~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIvAtG~~~  173 (461)
T PLN02172        110 HREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGHYT  173 (461)
T ss_pred             HHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEEeccCCC
Confidence            466888899999988987  999999999998888898877532  1  457899999999874

>PRK07588 hypothetical protein; Provisional

Probab=99.22  E-value=1.2e-10  Score=114.79  Aligned_cols=59  Identities=12%  Similarity=0.193  Sum_probs=48.9

Q ss_pred             eHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChH
Q psy7710         202 DWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD  261 (473)
Q Consensus       202 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~  261 (473)
                      .-..+...|.+.+. .|++++++++|++++.+++++.|++++|.++++|.||.|.|.+|.
T Consensus       101 ~r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S~  159 (391)
T PRK07588        101 PRGDLAAAIYTAID-GQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHSH  159 (391)
T ss_pred             EHHHHHHHHHHhhh-cCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCcc
Confidence            33556666666553 479999999999999988889999888888999999999999983

>PRK07395 L-aspartate oxidase; Provisional

Probab=99.22  E-value=5.2e-10  Score=114.01  Aligned_cols=183  Identities=16%  Similarity=0.150  Sum_probs=95.2

Q ss_pred             CCCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHH
Q psy7710          54 SPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYF  133 (473)
Q Consensus        54 ~~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (473)
                      .+.++||+|||+|++|++||+.++ .  |.+|+||||.+ ..+++|..+.|.+..... ..++. ..+       +.+..
T Consensus         6 ~~~e~DVlVVG~G~AGl~AAi~A~-~--G~~V~lieK~~-~~gg~s~~a~Ggi~a~~~-~~ds~-e~~-------~~d~~   72 (553)
T PRK07395          6 LPSQFDVLVVGSGAAGLYAALCLP-S--HLRVGLITKDT-LKTSASDWAQGGIAAAIA-PDDSP-KLH-------YEDTL   72 (553)
T ss_pred             ccccCCEEEECccHHHHHHHHHhh-c--CCCEEEEEccC-CCCCchhhhcccceeccc-CCCCH-HHH-------HHHHH
Confidence            346799999999999999999985 5  79999999985 444555555444432211 11111 000       11111


Q ss_pred             HhcCCCCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcc-cceeEecCCccceeHHHHHHHHH
Q psy7710         134 DKRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCK-GVKAIHSPNTGIVDWGLVTRVMG  211 (473)
Q Consensus       134 ~~~~~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~l~  211 (473)
                      +...  +..+..+    -. -.+...+.++++..+|+ .+..-+. ... ..+... ...-.+...+  -....+...|.
T Consensus        73 ~~g~--~~~d~~l----v~~~~~~s~~~i~wL~~~Gv-~f~~~~~-~~~-~~~~~g~s~~r~~~~~d--~~G~~i~~~L~  141 (553)
T PRK07395         73 KAGA--GLCDPEA----VRFLVEQAPEAIASLVEMGV-AFDRHGQ-HLA-LTLEAAHSRPRVLHAAD--TTGRAIVTTLT  141 (553)
T ss_pred             HhcC--CCCCHHH----HHHHHHHHHHHHHHHHhcCC-eeecCCC-cee-eecccccccCeEEEeCC--CChHHHHHHHH
Confidence            1000  0000000    00 01222344455555665 2221110 000 000000 0001111111  11356778888


Q ss_pred             HHHHHc-CcEEEeCceEEEEEEcC--CeE-EEE-cCCCc--EEEcCEEEEcCCcCh
Q psy7710         212 EEFCEL-GGEIRLNQQVESFKENP--ESV-TIS-TKQGD--HLESSYALVCAGLQA  260 (473)
Q Consensus       212 ~~~~~~-Gv~i~~~~~V~~i~~~~--~~v-~v~-~~~g~--~i~ad~VV~aaG~~s  260 (473)
                      +.++++ |++|++++.|++|..++  +.+ .|. ..+|.  .+.|+.||+|||+++
T Consensus       142 ~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~~  197 (553)
T PRK07395        142 EQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGGG  197 (553)
T ss_pred             HHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCCc
Confidence            888754 99999999999998763  433 232 23442  478999999999963

>PRK08275 putative oxidoreductase; Provisional

Probab=99.21  E-value=5.9e-10  Score=114.27  Aligned_cols=187  Identities=13%  Similarity=0.114  Sum_probs=94.7

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK  135 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (473)
                      .++||+|||+|.+|++||+.++++++|.+|+||||.+..+++++....+.+........++. .       ..+.+..+.
T Consensus         8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~-~-------~~~~d~~~~   79 (554)
T PRK08275          8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATP-E-------QYTKEITIA   79 (554)
T ss_pred             EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCH-H-------HHHHHHHHh
Confidence            46899999999999999999998755789999999854333332222111111000000110 0       001111100


Q ss_pred             cCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHH
Q psy7710         136 RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC  215 (473)
Q Consensus       136 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  215 (473)
                       +-.......+..    -.+...+.++++..+|+ .+.........  .+.....+....+   .-....+.+.|.+.++
T Consensus        80 -~~~~~d~~~v~~----~~~~s~~~i~~L~~~Gv-~f~~~~~g~~~--~~~~~~~~~~~~~---~~~G~~i~~~L~~~~~  148 (554)
T PRK08275         80 -NDGIVDQKAVYA----YAEHSFETIQQLDRWGV-KFEKDETGDYA--VKKVHHMGSYVLP---MPEGHDIKKVLYRQLK  148 (554)
T ss_pred             -cCCCccHHHHHH----HHHhhHHHHHHHHHCCC-eeEeCCCCCEe--eecccccCccccc---CCChHHHHHHHHHHHH
Confidence             000000000000    01112334455555665 22211000000  0000000000000   0113467888999899


Q ss_pred             HcCcEEEeCceEEEEEEc-CCeE-EE---EcCCCc--EEEcCEEEEcCCcChH
Q psy7710         216 ELGGEIRLNQQVESFKEN-PESV-TI---STKQGD--HLESSYALVCAGLQAD  261 (473)
Q Consensus       216 ~~Gv~i~~~~~V~~i~~~-~~~v-~v---~~~~g~--~i~ad~VV~aaG~~s~  261 (473)
                      +.|++|++++.|++|..+ ++.+ .|   ...+|.  .+.|+.||+|||+++.
T Consensus       149 ~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~~  201 (554)
T PRK08275        149 RARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAGR  201 (554)
T ss_pred             HCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCccc
Confidence            999999999999999876 4433 23   234553  5789999999999853

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.21  E-value=2.9e-10  Score=111.72  Aligned_cols=66  Identities=11%  Similarity=0.244  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHH-cCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710         204 GLVTRVMGEEFCE-LGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS  270 (473)
Q Consensus       204 ~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~  270 (473)
                      ..+...|.+.+.+ .|++++++++|++++.+++++.|++.+|.+++||.||.|.|.+| .+.+.+|+.
T Consensus       110 ~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgADG~~S-~vR~~~gi~  176 (384)
T PRK08849        110 RLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGADGANS-QVRQLAGIG  176 (384)
T ss_pred             HHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEecCCCc-hhHHhcCCC
Confidence            4466667777655 47999999999999998888888888888999999999999998 577777765

>PRK06126 hypothetical protein; Provisional

Probab=99.21  E-value=5e-10  Score=115.22  Aligned_cols=69  Identities=17%  Similarity=0.345  Sum_probs=53.8

Q ss_pred             eHHHHHHHHHHHHHH-cCcEEEeCceEEEEEEcCCeEEEEc---CCC--cEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710         202 DWGLVTRVMGEEFCE-LGGEIRLNQQVESFKENPESVTIST---KQG--DHLESSYALVCAGLQADEMALKSGCSL  271 (473)
Q Consensus       202 ~~~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~v~v~~---~~g--~~i~ad~VV~aaG~~s~~l~~~~g~~~  271 (473)
                      +...+...|.+.+++ .|++|+++++|+++..+++++.++.   .+|  .++++|+||.|.|.+| .+.+.+|+..
T Consensus       124 ~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~~~~g~~~~i~ad~vVgADG~~S-~VR~~lgi~~  198 (545)
T PRK06126        124 PQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARS-AVRRSLGISY  198 (545)
T ss_pred             CHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEECCCCcEEEEEEEEEEecCCcch-HHHHhcCCcc
Confidence            345566777877776 4899999999999998887766543   334  3689999999999998 5888888764

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.20  E-value=6.6e-10  Score=114.44  Aligned_cols=181  Identities=13%  Similarity=0.071  Sum_probs=98.4

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccC-CCchhHHHHHHHhHHHHHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYY-KPGTLKAKLCVEGMNLAYEYFD  134 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  134 (473)
                      .++||+|||+|++|+++|+++++.   .+|+|+||. .+++++|..+.|.+...... ..+.... .       +.+...
T Consensus         4 ~~~DVlVIG~G~AGl~AAl~aa~~---~~VilleK~-~~~~g~s~~a~Ggi~a~~~~~~~D~~e~-~-------~~d~~~   71 (583)
T PRK08205          4 HRYDVVIVGAGGAGMRAAIEAGPR---ARTAVLTKL-YPTRSHTGAAQGGMCAALANVEEDNWEW-H-------TFDTVK   71 (583)
T ss_pred             eeccEEEECccHHHHHHHHHHHhC---CCEEEEeCC-CCCCCCchhhhcchhhcccCCCCCCHHH-H-------HHHHHH
Confidence            468999999999999999999864   799999998 45555565555544322211 1111100 0       001110


Q ss_pred             hcCCCCcccCeEEEEeCc----ChhhHHHHHHHHHhCCCCcceeeC-HHHHHhhcCCccc-------ceeEecCCcccee
Q psy7710         135 KRNIPYKKCGKLIVALNE----QLEPLHDLYERSIQNNVKDVRLVS-AEEIKTIEPYCKG-------VKAIHSPNTGIVD  202 (473)
Q Consensus       135 ~~~~~~~~~g~l~~~~~~----~~~~~~~~~~~~~~~g~~~~~~l~-~~~~~~~~p~~~~-------~~~~~~~~~~~~~  202 (473)
                      . +. +       +...+    -.+...+.++++.++|+ .+.... .......++....       ....+. .  ...
T Consensus        72 ~-g~-~-------~~d~~~v~~~~~~~~~~i~~L~~~Gv-~f~~~~~g~~~~~~~gg~s~~~~~~~~~r~~~~-~--~~t  138 (583)
T PRK08205         72 G-GD-Y-------LVDQDAAEIMAKEAIDAVLDLEKMGL-PFNRTPEGKIDQRRFGGHTRDHGKAPVRRACYA-A--DRT  138 (583)
T ss_pred             h-hc-C-------CCCHHHHHHHHHHHHHHHHHHHHcCC-ccccCCCCceeecccccccccccCCCccceecc-C--CCC
Confidence            0 00 0       00000    01223344555666666 332111 0000000110000       000111 0  012


Q ss_pred             HHHHHHHHHHHHHHcCcEEEeCceEEEEEEcC----CeE-EE---EcCCCc--EEEcCEEEEcCCcChH
Q psy7710         203 WGLVTRVMGEEFCELGGEIRLNQQVESFKENP----ESV-TI---STKQGD--HLESSYALVCAGLQAD  261 (473)
Q Consensus       203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~----~~v-~v---~~~~g~--~i~ad~VV~aaG~~s~  261 (473)
                      ...+...|.+.+++.|+++++++.|++|..++    +.+ .+   ...++.  .+.|+.||+|||+++.
T Consensus       139 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~  207 (583)
T PRK08205        139 GHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSGR  207 (583)
T ss_pred             HHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCcc
Confidence            46788889999999999999999999998654    433 23   224452  5789999999999863

>TIGR01810 betA choline dehydrogenase

Probab=99.20  E-value=5.9e-10  Score=114.03  Aligned_cols=56  Identities=14%  Similarity=0.134  Sum_probs=42.8

Q ss_pred             HHcCcEEEeCceEEEEEEcCCeE-EEEcCC-Cc---EEEcCEEEEcCCcC-hHHHHHhcCCC
Q psy7710         215 CELGGEIRLNQQVESFKENPESV-TISTKQ-GD---HLESSYALVCAGLQ-ADEMALKSGCS  270 (473)
Q Consensus       215 ~~~Gv~i~~~~~V~~i~~~~~~v-~v~~~~-g~---~i~ad~VV~aaG~~-s~~l~~~~g~~  270 (473)
                      ++.|++|++++.|++|..+++++ .|+..+ +.   .+.++.||+|+|+. |+.|+..+||.
T Consensus       205 ~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG  266 (532)
T TIGR01810       205 KRPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIG  266 (532)
T ss_pred             cCCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCCC
Confidence            35689999999999999876543 344322 21   35789999999995 99999988875

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.20  E-value=8.5e-10  Score=113.60  Aligned_cols=186  Identities=11%  Similarity=0.039  Sum_probs=96.3

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccC-CCchhHHHHHHHhHHHHHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYY-KPGTLKAKLCVEGMNLAYEYFD  134 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  134 (473)
                      .++||+|||+|.+|+++|+.+++.  |.+|+||||.. ..++.|..+.|.+...... ..+... ..       +.+...
T Consensus        11 ~~~DVlVIG~G~AGl~AAi~Aa~~--G~~V~vleK~~-~~~g~t~~a~Ggi~~~~~~~~~ds~~-~~-------~~dt~~   79 (591)
T PRK07057         11 RKFDVVIVGAGGSGMRASLQLARA--GLSVAVLSKVF-PTRSHTVAAQGGIGASLGNMSEDNWH-YH-------FYDTIK   79 (591)
T ss_pred             ccCCEEEECccHHHHHHHHHHHHC--CCcEEEEeccC-CCCCCchhccCCcccccccccccChh-Hh-------HHHHHH
Confidence            568999999999999999999999  99999999984 4445554444433322110 111110 00       000000


Q ss_pred             hcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHH-hhcCCc-------ccceeEecCCccceeHHHH
Q psy7710         135 KRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIK-TIEPYC-------KGVKAIHSPNTGIVDWGLV  206 (473)
Q Consensus       135 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~p~~-------~~~~~~~~~~~~~~~~~~~  206 (473)
                      ... .+.....+..    -.+...+.+.++.++|+ .+..-....+. ..+...       ......+. .  ......+
T Consensus        80 ~g~-~~~d~~~v~~----~~~~a~~~i~~L~~~Gv-~f~~~~~G~~~~~~~gg~s~~~~~~~~~r~~~~-~--~~tG~~l  150 (591)
T PRK07057         80 GSD-WLGDQDAIEF----MCREAPNVVYELEHFGM-PFDRNADGTIYQRPFGGHTANYGEKPVQRACAA-A--DRTGHAL  150 (591)
T ss_pred             hcC-CCCCHHHHHH----HHHHHHHHHHHHHhcCC-cceeCCCCcEeeeccCCccccccCCccceeeec-C--CCChHHH
Confidence            000 0000000000    01122233444445555 22211000000 000000       00000110 0  0113568


Q ss_pred             HHHHHHHHHHcCcEEEeCceEEEEEEc-CCeE-EEE---cCCC--cEEEcCEEEEcCCcChH
Q psy7710         207 TRVMGEEFCELGGEIRLNQQVESFKEN-PESV-TIS---TKQG--DHLESSYALVCAGLQAD  261 (473)
Q Consensus       207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v-~v~---~~~g--~~i~ad~VV~aaG~~s~  261 (473)
                      ...|.+.+.+.|++++.++.++++..+ ++.+ .|.   ..+|  ..+.|+.||+|||+++.
T Consensus       151 ~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~  212 (591)
T PRK07057        151 LHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAGR  212 (591)
T ss_pred             HHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCccc
Confidence            888888888899999999999999875 3433 332   2345  35789999999999864

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.20  E-value=1.3e-09  Score=106.76  Aligned_cols=69  Identities=9%  Similarity=0.130  Sum_probs=58.1

Q ss_pred             ceeHHHHHHHHHHHHHHcC-cEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710         200 IVDWGLVTRVMGEEFCELG-GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS  270 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~  270 (473)
                      .+.-..+.+.|.+.+.+.+ ++++++++|+++..+++++.|.++++ +++||.||.|.|.+| .+.+.++++
T Consensus       100 ~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~adlvIgADG~~S-~vR~~l~~~  169 (374)
T PRK06617        100 VVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCNLLIICDGANS-KVRSHYFAN  169 (374)
T ss_pred             EEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeCEEEEeCCCCc-hhHHhcCCC
Confidence            3556778888999888775 89999999999998888888888777 999999999999998 566777665

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=99.19  E-value=1.2e-09  Score=112.67  Aligned_cols=180  Identities=13%  Similarity=0.128  Sum_probs=95.2

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK  135 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (473)
                      .++||+|||+|.+|+++|+.+++..+|.+|+||||.+..+++ + .+.|............        +.+.+.+....
T Consensus        10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~-~-~a~G~~~~~~~~~~~d--------s~e~~~~d~~~   79 (608)
T PRK06854         10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSG-A-VAQGLSAINAYIGEGE--------TPEDYVRYVRK   79 (608)
T ss_pred             eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCc-c-cccCccccccccccCC--------CHHHHHHHHHH
Confidence            468999999999999999999986457899999998533222 2 2222211110001110        00111111100


Q ss_pred             cCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHH
Q psy7710         136 RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC  215 (473)
Q Consensus       136 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  215 (473)
                      .+........+.    .-.+...+.++++..+|+ .+.......   ..+     .+..   ....++..+...|.+.++
T Consensus        80 ~~~~~~d~~lv~----~~~~~s~~~i~~L~~~Gv-~f~~~~~G~---~~~-----~g~~---~~~~~G~~~~~~L~~~a~  143 (608)
T PRK06854         80 DLMGIVREDLVY----DIARHVDSVVHLFEEWGL-PIWKDENGK---YVR-----RGRW---QIMINGESYKPIVAEAAK  143 (608)
T ss_pred             hccCCCCHHHHH----HHHHhHHHHHHHHHHcCC-eeeecCCCC---ccc-----cCCc---cCCCChHHHHHHHHHHHH
Confidence            000000000000    001223344555666666 222110000   000     0000   001345677888888888


Q ss_pred             HcC-cEEEeCceEEEEEEcCCeEE-E---EcCCC--cEEEcCEEEEcCCcChH
Q psy7710         216 ELG-GEIRLNQQVESFKENPESVT-I---STKQG--DHLESSYALVCAGLQAD  261 (473)
Q Consensus       216 ~~G-v~i~~~~~V~~i~~~~~~v~-v---~~~~g--~~i~ad~VV~aaG~~s~  261 (473)
                      +.| +++++++.|.++..+++.+. |   .+.++  ..+.|+.||+|||+++.
T Consensus       144 ~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~  196 (608)
T PRK06854        144 KALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGAAG  196 (608)
T ss_pred             hcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCchhh
Confidence            776 99999999999986655432 3   33444  36899999999999874

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=99.19  E-value=6e-10  Score=114.60  Aligned_cols=67  Identities=13%  Similarity=0.108  Sum_probs=50.1

Q ss_pred             eeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEE-EEc-CCC--cEEEc-CEEEEcCCcCh--HHHHHhc
Q psy7710         201 VDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVT-IST-KQG--DHLES-SYALVCAGLQA--DEMALKS  267 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~~-~~g--~~i~a-d~VV~aaG~~s--~~l~~~~  267 (473)
                      .++..++..|.+.++++|++++++++|++|..+++.+. |.. .++  ..+.| +.||+|+|+++  .++++..
T Consensus       218 ~~G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~~~~  291 (578)
T PRK12843        218 VMGNALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLRREL  291 (578)
T ss_pred             cccHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHHHHh
Confidence            45677899999999999999999999999987655443 433 233  24676 68999999995  3555543

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=99.19  E-value=3.1e-09  Score=103.18  Aligned_cols=111  Identities=13%  Similarity=0.143  Sum_probs=66.6

Q ss_pred             ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeee
Q psy7710         200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFR  279 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~  279 (473)
                      .++...+.+.+.+.+.. +  ++++++|+++.  .+++.+  .+|.+++|+.||.|.|..+.....       ...+-..
T Consensus        85 ~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v~--~~~v~l--~dg~~~~A~~VI~A~G~~s~~~~~-------~~~Q~f~  150 (370)
T TIGR01789        85 SMTSTRFHEGLLQAFPE-G--VILGRKAVGLD--ADGVDL--APGTRINARSVIDCRGFKPSAHLK-------GGFQVFL  150 (370)
T ss_pred             EEEHHHHHHHHHHhhcc-c--EEecCEEEEEe--CCEEEE--CCCCEEEeeEEEECCCCCCCcccc-------ceeeEEE
Confidence            45556677777655533 3  77799999883  344555  466689999999999988643322       1345567


Q ss_pred             eEEEEeCcCcccCccccc-ccCCCCCCCccEEEEecCCCCeEEECCC
Q psy7710         280 GEYLLLNPAKQHLVRGNI-YPVPDPNFPFLGVHFTPRMDGSVWLGPN  325 (473)
Q Consensus       280 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~g~~~iG~~  325 (473)
                      |..+.+..+........+ +..+... ....+|+.|..++++++..|
T Consensus       151 G~~~r~~~p~~~~~~~lMD~~~~q~~-g~~F~Y~lP~~~~~~lvE~T  196 (370)
T TIGR01789       151 GREMRLQEPHGLENPIIMDATVDQLA-GYRFVYVLPLGSHDLLIEDT  196 (370)
T ss_pred             EEEEEEcCCCCCCccEEEeeeccCCC-CceEEEECcCCCCeEEEEEE
Confidence            787887644211111110 1111111 12246989999899888544

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=99.19  E-value=5.6e-10  Score=113.36  Aligned_cols=64  Identities=16%  Similarity=0.189  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHH-cCcEEEeCceEEEEEEcCCeEE-EEc-CCC--cEEEcC-EEEEcCCcC--hHHHHHhc
Q psy7710         204 GLVTRVMGEEFCE-LGGEIRLNQQVESFKENPESVT-IST-KQG--DHLESS-YALVCAGLQ--ADEMALKS  267 (473)
Q Consensus       204 ~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~v~-v~~-~~g--~~i~ad-~VV~aaG~~--s~~l~~~~  267 (473)
                      ..+...+.+.+.+ .|++|+++++|++|..+++.|. |.. .++  ..++|+ .||+|||++  ..++++..
T Consensus       173 ~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~~n~~m~~~~  244 (513)
T PRK12837        173 RALIGRFLAALARFPNARLRLNTPLVELVVEDGRVVGAVVERGGERRRVRARRGVLLAAGGFEQNDDMRARY  244 (513)
T ss_pred             HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCEEEEEEEEECCcEEEEEeCceEEEeCCCccCCHHHHHHh
Confidence            3566667776665 4999999999999988766543 322 233  357886 799999998  34566554

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=99.18  E-value=2.8e-09  Score=102.87  Aligned_cols=66  Identities=17%  Similarity=0.142  Sum_probs=56.5

Q ss_pred             eHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEE-EEcCCC--cEEEcCEEEEcCCcC-hHHHHHhc
Q psy7710         202 DWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVT-ISTKQG--DHLESSYALVCAGLQ-ADEMALKS  267 (473)
Q Consensus       202 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~~~~g--~~i~ad~VV~aaG~~-s~~l~~~~  267 (473)
                      -+.++.+.|.+.++++|++++.+++|.++..+++++. |.+.++  ..++||.||+|+|+| |..|.+.+
T Consensus       261 ~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~l  330 (419)
T TIGR03378       261 LGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAEF  330 (419)
T ss_pred             cHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHHHhhc
Confidence            3478899999999999999999999999998877665 665554  489999999999999 99998765

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.18  E-value=3.4e-10  Score=115.76  Aligned_cols=49  Identities=33%  Similarity=0.364  Sum_probs=41.9

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEE
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVH  107 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~  107 (473)
                      .++||+|||+|.+|+++|+.++++  |.+|+||||.. ..++++..+.|.+.
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~~--G~~v~liEk~~-~~gG~~~~s~g~~~   53 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAADS--GLEPLIVEKQD-KVGGSTAMSGGVLW   53 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC--CCcEEEEecCC-CCCceeceecceee
Confidence            578999999999999999999999  99999999984 45566777776653

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.18  E-value=1.1e-09  Score=112.79  Aligned_cols=185  Identities=9%  Similarity=-0.014  Sum_probs=95.1

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccC-CCchhHHHHHHHhHHHHHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYY-KPGTLKAKLCVEGMNLAYEYFD  134 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  134 (473)
                      .++||+|||+|++|+++|+.++++  |.+|+||||.. +.+++|..+.|.+...... .+..-...+.       .+..+
T Consensus         2 ~~~DVlVVG~G~AGl~AAi~Aa~~--G~~V~lieK~~-~~~g~s~~a~Ggi~a~~~~~~~~Ds~e~~~-------~d~~~   71 (589)
T PRK08641          2 AKGKVIVVGGGLAGLMATIKAAEA--GVHVDLFSLVP-VKRSHSVCAQGGINGAVNTKGEGDSPWIHF-------DDTVY   71 (589)
T ss_pred             CCccEEEECchHHHHHHHHHHHHc--CCcEEEEEccC-CCCCcccccCCCeEEecCcCCCCCCHHHHH-------HHHHH
Confidence            356999999999999999999999  99999999994 5555666665544432210 0110000111       01100


Q ss_pred             hcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecC---CccceeHHHHHHHHH
Q psy7710         135 KRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSP---NTGIVDWGLVTRVMG  211 (473)
Q Consensus       135 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~~~~l~  211 (473)
                      . +-.......+..    -.+...+.++++.++|+ .+.........     ....++-..+   ..+......+...|.
T Consensus        72 ~-g~~~~d~~~v~~----~~~~s~~~i~~L~~~Gv-~f~~~~~g~~~-----~~~~gg~~~~R~~~~~~~tG~~i~~~L~  140 (589)
T PRK08641         72 G-GDFLANQPPVKA----MCEAAPGIIHLLDRMGV-MFNRTPEGLLD-----FRRFGGTLHHRTAFAGATTGQQLLYALD  140 (589)
T ss_pred             h-cCCcCCHHHHHH----HHHHHHHHHHHHHHcCC-CcccCCCCcEe-----eeccCCeecccccccCCCcHHHHHHHHH
Confidence            0 000000000000    01122334455555665 22110000000     0000000000   011123456777887


Q ss_pred             HHHHHcC----cEEEeCceEEEEEEc-CCeE-EEE--c-CCC--cEEEcCEEEEcCCcChH
Q psy7710         212 EEFCELG----GEIRLNQQVESFKEN-PESV-TIS--T-KQG--DHLESSYALVCAGLQAD  261 (473)
Q Consensus       212 ~~~~~~G----v~i~~~~~V~~i~~~-~~~v-~v~--~-~~g--~~i~ad~VV~aaG~~s~  261 (473)
                      +.+++.+    ++++.++.++++..+ ++.+ .|.  . .++  ..+.|+.||+|||+++.
T Consensus       141 ~~~~~~~~~~~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~  201 (589)
T PRK08641        141 EQVRRYEVAGLVTKYEGWEFLGAVLDDEGVCRGIVAQDLFTMEIESFPADAVIMATGGPGI  201 (589)
T ss_pred             HHHHhhhccCCcEEEeeEEEEEEEECCCCEEEEEEEEECCCCcEEEEECCEEEECCCCCcC
Confidence            7776543    789999999999874 4443 233  2 233  25789999999999863

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=99.18  E-value=8.2e-10  Score=114.67  Aligned_cols=58  Identities=10%  Similarity=0.150  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeE---EEEc-CCCc--EEEcCEEEEcCCcChH
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESV---TIST-KQGD--HLESSYALVCAGLQAD  261 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v---~v~~-~~g~--~i~ad~VV~aaG~~s~  261 (473)
                      ..+...|.+.+.+.|++|+.++.|++|..+++.+   .+.. .+|.  .+.|+.||+|||++..
T Consensus       158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~  221 (657)
T PRK08626        158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGGYGR  221 (657)
T ss_pred             HHHHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccC
Confidence            3566778888889999999999999999876643   3432 4562  4679999999998863

>PRK06753 hypothetical protein; Provisional

Probab=99.18  E-value=1.2e-09  Score=107.04  Aligned_cols=67  Identities=10%  Similarity=0.182  Sum_probs=53.1

Q ss_pred             eeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710         201 VDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS  270 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~  270 (473)
                      ++-..+.+.|.+.+.  +.+|+++++|+++..+++++.|++++|.++++|.||.|.|.+| .+.+.++..
T Consensus        95 i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S-~vR~~~~~~  161 (373)
T PRK06753         95 LHRQTLIDIIKSYVK--EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHS-KVRQSVNAD  161 (373)
T ss_pred             ccHHHHHHHHHHhCC--CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcch-HHHHHhCCC
Confidence            444566666766654  4689999999999988888999888888899999999999998 566666543

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=99.17  E-value=6e-09  Score=107.16  Aligned_cols=67  Identities=21%  Similarity=0.385  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHc-CcEEEeCceEEEEEEcCCeEEEE--cCCCc-EEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710         204 GLVTRVMGEEFCEL-GGEIRLNQQVESFKENPESVTIS--TKQGD-HLESSYALVCAGLQADEMALKSGCSL  271 (473)
Q Consensus       204 ~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~v~v~--~~~g~-~i~ad~VV~aaG~~s~~l~~~~g~~~  271 (473)
                      ..+.+.|.+.+.+. |++++++++|+++..+++++.++  +.++. +++||+||.|.|.+|. +.+.+|++.
T Consensus       125 ~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgADG~~S~-vR~~lg~~~  195 (547)
T PRK08132        125 YYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACDGARSP-LREMLGLEF  195 (547)
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECCCCCcH-HHHHcCCCC
Confidence            45666777777765 79999999999999888777644  34453 6899999999999984 778888764

>PRK08071 L-aspartate oxidase; Provisional

Probab=99.17  E-value=9.1e-10  Score=111.53  Aligned_cols=183  Identities=13%  Similarity=0.097  Sum_probs=95.1

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHhc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKR  136 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (473)
                      ++||+|||+|.+|+++|+++++   |.+|+||||.+ +.+++|..+.|.+..... ..++.. .       .+.+.....
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~---g~~V~lveK~~-~~~g~s~~a~Ggi~~~~~-~~ds~e-~-------~~~d~~~~g   69 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH---EYNVIIITKKT-KRNSNSHLAQGGIAAAVA-TYDSPN-D-------HFEDTLVAG   69 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc---CCCEEEEeccC-CCCCCchhcCccceeccc-CCCCHH-H-------HHHHHHHhc
Confidence            6899999999999999999964   68999999995 445555545554433221 111110 0       111111100


Q ss_pred             CCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHH-HhhcCCcccceeEecCCccceeHHHHHHHHHHHHH
Q psy7710         137 NIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEI-KTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC  215 (473)
Q Consensus       137 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  215 (473)
                      .-..++ ..+..    -.+...+.++++.++|+ .+..-....+ ...+.... ..-.+.. .+...+..+++.|.+.++
T Consensus        70 ~~~~d~-~~v~~----~~~~s~~~i~~L~~~Gv-~f~~~~~g~~~~~~~gg~~-~~r~~~~-~gd~~g~~i~~~L~~~~~  141 (510)
T PRK08071         70 CHHNNE-RAVRY----LVEEGPKEIQELIENGM-PFDGDETGPLHLGKEGAHR-KRRILHA-GGDATGKNLLEHLLQELV  141 (510)
T ss_pred             cCcCCH-HHHHH----HHHHHHHHHHHHHHcCC-ccccCCCCceeeccCcCcc-CCeEEec-CCCCcHHHHHHHHHHHHh
Confidence            000000 00000    01222334445555665 2211000000 00000000 0011111 112235668888888776


Q ss_pred             HcCcEEEeCceEEEEEEcCCeEE-EEc--CCC--cEEEcCEEEEcCCcChH
Q psy7710         216 ELGGEIRLNQQVESFKENPESVT-IST--KQG--DHLESSYALVCAGLQAD  261 (473)
Q Consensus       216 ~~Gv~i~~~~~V~~i~~~~~~v~-v~~--~~g--~~i~ad~VV~aaG~~s~  261 (473)
                       .|++|++++.|+++..+++.+. |.+  .++  ..++|+.||+|||+++.
T Consensus       142 -~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~  191 (510)
T PRK08071        142 -PHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGCGG  191 (510)
T ss_pred             -cCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence             6999999999999987666443 332  334  26789999999999863

>PRK07512 L-aspartate oxidase; Provisional

Probab=99.17  E-value=8.8e-10  Score=111.73  Aligned_cols=177  Identities=14%  Similarity=0.096  Sum_probs=94.7

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeecc--CCCchhHHHHHHHh-----HHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIY--YKPGTLKAKLCVEG-----MNL  128 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~--~~~~~~~~~~~~~~-----~~~  128 (473)
                      .++||+|||+|++|+++|+.++    +.+|+||||.....+++|..+.|.+.....  .+++.+.......+     .+.
T Consensus         8 ~~~DVlVIG~G~AGl~AAl~Aa----~~~V~lleK~~~~~gg~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~g~~d~~~   83 (513)
T PRK07512          8 LTGRPVIVGGGLAGLMAALKLA----PRPVVVLSPAPLGEGASSAWAQGGIAAALGPDDSPALHAADTLAAGAGLCDPAV   83 (513)
T ss_pred             CcCCEEEECchHHHHHHHHHhC----cCCEEEEECCCCCCCcchHHhhhccccccCCCCCHHHHHHHHHHhhCCCCCHHH
Confidence            5689999999999999999996    469999999843244555555554432211  11111111110000     000


Q ss_pred             HHHHHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHH-hhcCCcccceeEecCCccceeHHHHH
Q psy7710         129 AYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIK-TIEPYCKGVKAIHSPNTGIVDWGLVT  207 (473)
Q Consensus       129 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~  207 (473)
                      ++.+                     .+...+.++++.++|+ .+..-...... ..+.........+..  +...+..+.
T Consensus        84 v~~~---------------------~~~s~~~i~wL~~~Gv-~f~~~~~G~~~~~~~~~~~~~r~~~~~--g~~~G~~l~  139 (513)
T PRK07512         84 AALI---------------------TAEAPAAIEDLLRLGV-PFDRDADGRLALGLEAAHSRRRIVHVG--GDGAGAAIM  139 (513)
T ss_pred             HHHH---------------------HHHHHHHHHHHHHhCC-ccccCCCCccccccccCccCCcEEEcC--CCCCHHHHH
Confidence            1111                     1222334455555665 22210000000 000000000011111  112246788


Q ss_pred             HHHHHHHHHc-CcEEEeCceEEEEEEcCCeE-EEEc--CCC-cEEEcCEEEEcCCcCh
Q psy7710         208 RVMGEEFCEL-GGEIRLNQQVESFKENPESV-TIST--KQG-DHLESSYALVCAGLQA  260 (473)
Q Consensus       208 ~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~v-~v~~--~~g-~~i~ad~VV~aaG~~s  260 (473)
                      ..|.+.+++. |++++.++.|++|..+++.+ .|..  .++ ..+.|+.||+|||+++
T Consensus       140 ~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~  197 (513)
T PRK07512        140 RALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGGIG  197 (513)
T ss_pred             HHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence            8898888775 89999999999998666543 3332  222 2589999999999974

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=99.17  E-value=1.9e-10  Score=108.86  Aligned_cols=64  Identities=16%  Similarity=0.174  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHcCcEEEeCceEEEEEEc--CCe---EEEEcCCCc----EEEcCEEEEcCCcC-hHHHHHhcCCC
Q psy7710         207 TRVMGEEFCELGGEIRLNQQVESFKEN--PES---VTISTKQGD----HLESSYALVCAGLQ-ADEMALKSGCS  270 (473)
Q Consensus       207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~--~~~---v~v~~~~g~----~i~ad~VV~aaG~~-s~~l~~~~g~~  270 (473)
                      ...|...+.+.|++|++++.|++|..+  +++   |.+...++.    .+.++.||+|+|+. |+.|+..+|+.
T Consensus       196 ~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGiG  269 (296)
T PF00732_consen  196 TTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGIG  269 (296)
T ss_dssp             HHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTEE
T ss_pred             hcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhcccccc
Confidence            334444444449999999999999764  443   334444443    46789999999997 89999999873

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.17  E-value=4.6e-10  Score=106.51  Aligned_cols=56  Identities=18%  Similarity=0.284  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      ..+...+.+.+++.|+++++ ++|+++..+++.+.|++.++.++++|+||+|+|...
T Consensus        57 ~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~  112 (300)
T TIGR01292        57 PELMEKMKEQAVKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASA  112 (300)
T ss_pred             HHHHHHHHHHHHHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCc
Confidence            34566677888889999998 899999988888888887777899999999999864

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK08401 L-aspartate oxidase; Provisional

Probab=99.16  E-value=2.1e-09  Score=107.91  Aligned_cols=175  Identities=11%  Similarity=0.112  Sum_probs=93.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHhcC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRN  137 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (473)
                      +||+|||+|++|+++|+.+++.  |.+|+|+||.. . .++|..+.+.+..... ..++.. .+       +.+..+...
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~--G~~V~liek~~-~-~~~s~~a~ggi~~~~~-~~ds~e-~~-------~~d~~~~~~   68 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKK--GFDVTIIGPGI-K-KSNSYLAQAGIAFPIL-EGDSIR-AH-------VLDTIRAGK   68 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHC--CCeEEEEeCCC-C-CCCcHHHcCCcccccC-CCCcHH-HH-------HHHHHHHhc
Confidence            6999999999999999999999  99999999973 2 2233323232211110 011110 00       001110000


Q ss_pred             CCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHHHc
Q psy7710         138 IPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCEL  217 (473)
Q Consensus       138 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  217 (473)
                      ...++ ..+..    -.+...+.++++.++|+ .+..   ..   ..... ...-.+...  ......+.+.|.+.+++.
T Consensus        69 ~~~d~-~~v~~----~~~~~~~~i~~L~~~Gv-~f~~---~~---~~~g~-~~~r~~~~~--~~~G~~i~~~L~~~~~~~  133 (466)
T PRK08401         69 YINDE-EVVWN----VISKSSEAYDFLTSLGL-EFEG---NE---LEGGH-SFPRVFTIK--NETGKHIIKILYKHAREL  133 (466)
T ss_pred             CCCCH-HHHHH----HHHHHHHHHHHHHHcCC-Cccc---CC---CcCCc-cCCeEEECC--CCchHHHHHHHHHHHHhc
Confidence            00000 00000    01122334455556666 2211   00   00000 000111111  112356888899999999


Q ss_pred             CcEEEeCceEEEEEEcCCeE-EEEcCCCcEEEcCEEEEcCCcChHH
Q psy7710         218 GGEIRLNQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQADE  262 (473)
Q Consensus       218 Gv~i~~~~~V~~i~~~~~~v-~v~~~~g~~i~ad~VV~aaG~~s~~  262 (473)
                      |++++++ .++++..+++.+ .|.+ ++..++++.||+|||+++..
T Consensus       134 gv~i~~~-~v~~l~~~~g~v~Gv~~-~g~~i~a~~VVLATGG~~~~  177 (466)
T PRK08401        134 GVNFIRG-FAEELAIKNGKAYGVFL-DGELLKFDATVIATGGFSGL  177 (466)
T ss_pred             CCEEEEe-EeEEEEeeCCEEEEEEE-CCEEEEeCeEEECCCcCcCC
Confidence            9999875 788887666554 3555 34579999999999999753

>PRK02106 choline dehydrogenase; Validated

Probab=99.15  E-value=7.4e-10  Score=113.98  Aligned_cols=57  Identities=11%  Similarity=0.028  Sum_probs=43.6

Q ss_pred             HHcCcEEEeCceEEEEEEcCCeE-EEEc--CCC--cEEEcCEEEEcCCcC-hHHHHHhcCCCC
Q psy7710         215 CELGGEIRLNQQVESFKENPESV-TIST--KQG--DHLESSYALVCAGLQ-ADEMALKSGCSL  271 (473)
Q Consensus       215 ~~~Gv~i~~~~~V~~i~~~~~~v-~v~~--~~g--~~i~ad~VV~aaG~~-s~~l~~~~g~~~  271 (473)
                      ++.+++|++++.|++|..+++++ .|+.  .++  ..+.++.||+|+|+. ++.|+..+||..
T Consensus       212 ~~~nl~i~~~a~V~rI~~~~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG~  274 (560)
T PRK02106        212 KRPNLTIVTHALTDRILFEGKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGP  274 (560)
T ss_pred             CCCCcEEEcCCEEEEEEEeCCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCCC
Confidence            35679999999999999876543 2443  333  245789999999998 899998888763

>PRK07233 hypothetical protein; Provisional

Probab=99.15  E-value=1.6e-09  Score=108.44  Aligned_cols=56  Identities=23%  Similarity=0.230  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcC
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ  259 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~  259 (473)
                      ..+.+.|.+.+++.|++|+++++|++|+.+++++.+.+.++..++||.||+|+...
T Consensus       198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~  253 (434)
T PRK07233        198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPP  253 (434)
T ss_pred             HHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHH
Confidence            56889999999999999999999999998877765444455589999999999875

>PRK06996 hypothetical protein; Provisional

Probab=99.14  E-value=5.5e-10  Score=110.23  Aligned_cols=72  Identities=13%  Similarity=0.137  Sum_probs=58.0

Q ss_pred             ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCC---cEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710         200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQG---DHLESSYALVCAGLQADEMALKSGCSL  271 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g---~~i~ad~VV~aaG~~s~~l~~~~g~~~  271 (473)
                      .++...+.+.|.+.+++.|++++++++++++..+++++.++..++   ++++||.||.|.|..+....+.+++..
T Consensus       111 ~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvIgADG~~~s~~r~~~~~~~  185 (398)
T PRK06996        111 VVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAVQAEGGLFHDQKADAGDSA  185 (398)
T ss_pred             EEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEEECCCCCchHHHHHcCCCc
Confidence            355677889999999999999999999999988888888876643   589999999999975334556666653

>TIGR02028 ChlP geranylgeranyl reductase

Probab=99.13  E-value=2.3e-09  Score=105.53  Aligned_cols=69  Identities=12%  Similarity=0.193  Sum_probs=50.2

Q ss_pred             ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEE---cCCeEEEE--cCC-----C--cEEEcCEEEEcCCcChHHHHHhc
Q psy7710         200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKE---NPESVTIS--TKQ-----G--DHLESSYALVCAGLQADEMALKS  267 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~---~~~~v~v~--~~~-----g--~~i~ad~VV~aaG~~s~~l~~~~  267 (473)
                      .++-..+-+.|.+.+.+.|++++.++ +.++..   .++.+.|+  ..+     |  .+++|+.||.|+|..| .+.+.+
T Consensus        89 ~v~R~~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S-~v~~~~  166 (398)
T TIGR02028        89 MLRREVLDSFLRRRAADAGATLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS-RVAKEI  166 (398)
T ss_pred             eeeHHHHHHHHHHHHHHCCcEEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch-HHHHHh
Confidence            35667788889999999999998775 767653   23344443  221     2  4799999999999998 677888


Q ss_pred             CCC
Q psy7710         268 GCS  270 (473)
Q Consensus       268 g~~  270 (473)
                      |+.
T Consensus       167 g~~  169 (398)
T TIGR02028       167 DAG  169 (398)
T ss_pred             CCC
Confidence            764

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=99.13  E-value=2.8e-09  Score=117.78  Aligned_cols=190  Identities=17%  Similarity=0.151  Sum_probs=97.6

Q ss_pred             CCCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEe-eccCCCchhHHHH-HHHhHHHHHH
Q psy7710          54 SPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHA-GIYYKPGTLKAKL-CVEGMNLAYE  131 (473)
Q Consensus        54 ~~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~-~~~~~~~~~~~~~-~~~~~~~~~~  131 (473)
                      .+.++||||||+|.+|+++|+.+++.  |.+|+||||.+..| ++|..+.|.+.. +....     ... ..++.+.+.+
T Consensus       406 ~t~~~DVvVVG~G~AGl~AAi~Aae~--Ga~VivlEK~~~~G-G~s~~s~ggi~~~~t~~q-----~~~gi~D~~~~~~~  477 (1167)
T PTZ00306        406 GSLPARVIVVGGGLAGCSAAIEAASC--GAQVILLEKEAKLG-GNSAKATSGINGWGTRAQ-----AKQDVLDGGKFFER  477 (1167)
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHHC--CCcEEEEEccCCCC-CchhhcccccccCCchhh-----hhhcccccHHHHHH
Confidence            34578999999999999999999999  99999999996544 454444433322 11000     000 0011111111


Q ss_pred             HHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCC--ccce--eHHHHH
Q psy7710         132 YFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPN--TGIV--DWGLVT  207 (473)
Q Consensus       132 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~--~~~~--~~~~~~  207 (473)
                      .....+.....+..+.-.   -.+...+.++++.++|+ .+..+..      ..........+.+.  ++..  ....+.
T Consensus       478 d~~~~~~~~~~d~~lv~~---~~~~s~e~idwL~~~Gv-~f~~~~~------~gg~~~~r~~~~~~~~~g~~~~~G~~i~  547 (1167)
T PTZ00306        478 DTHLSGKGGHCDPGLVKT---LSVKSADAISWLSSLGV-PLTVLSQ------LGGASRKRCHRAPDKKDGTPVPIGFTIM  547 (1167)
T ss_pred             HHHHhccCCCCCHHHHHH---HHHhhHHHHHHHHHcCC-Cceeeec------cCCCCCCceeecCcccCCCcCCcHHHHH
Confidence            100000000000000000   01222344555666666 3332110      00000000111111  1111  124566


Q ss_pred             HHHHHHHHH---cCcEEEeCceEEEEEEcC-----C----eE-EE--EcC---CC--cEEEcCEEEEcCCcChH
Q psy7710         208 RVMGEEFCE---LGGEIRLNQQVESFKENP-----E----SV-TI--STK---QG--DHLESSYALVCAGLQAD  261 (473)
Q Consensus       208 ~~l~~~~~~---~Gv~i~~~~~V~~i~~~~-----~----~v-~v--~~~---~g--~~i~ad~VV~aaG~~s~  261 (473)
                      ..|.+.+++   .|++|+++++++++..++     +    +| .|  +..   +|  ..++|+.||+|||++..
T Consensus       548 ~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATGGf~~  621 (1167)
T PTZ00306        548 RTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATGGFSN  621 (1167)
T ss_pred             HHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecCCccc
Confidence            777777665   499999999999999763     1    33 23  333   45  35889999999999954

>PRK07045 putative monooxygenase; Reviewed

Probab=99.13  E-value=1.8e-09  Score=106.39  Aligned_cols=67  Identities=7%  Similarity=0.198  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHH-cCcEEEeCceEEEEEEcCCe--EEEEcCCCcEEEcCEEEEcCCcChHHHHHh-cCCC
Q psy7710         203 WGLVTRVMGEEFCE-LGGEIRLNQQVESFKENPES--VTISTKQGDHLESSYALVCAGLQADEMALK-SGCS  270 (473)
Q Consensus       203 ~~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~--v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~-~g~~  270 (473)
                      -..+.+.|.+.+.+ .|++++++++|+++..++++  +.|++++|+++++|.||.|.|.+| .+.+. ++++
T Consensus       105 r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S-~vR~~~~~~~  175 (388)
T PRK07045        105 CEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARS-MIRDDVLRMP  175 (388)
T ss_pred             HHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCCh-HHHHHhhCCC
Confidence            34577778777754 58999999999999986544  467888888899999999999998 34443 4443

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=99.13  E-value=6.1e-10  Score=114.14  Aligned_cols=48  Identities=33%  Similarity=0.480  Sum_probs=38.9

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC--cccCcccCCCcceE
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK--ELGMHQTGHNSGVV  106 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~--~~g~~~s~~~~g~~  106 (473)
                      .++||+|||+|.+|+++|+.++++  |.+|+||||.+  ..| +++..+.|.+
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~--G~~VivlEK~~~~~~G-G~s~~s~Gg~   52 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADA--GKRVLLLDQENEANLG-GQAFWSLGGL   52 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCCCCCCC-CceeccCCce
Confidence            568999999999999999999999  99999999986  344 4444444444

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=99.13  E-value=1.5e-09  Score=106.94  Aligned_cols=66  Identities=18%  Similarity=0.305  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEE-cCCeEEEEc-CCC--cEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKE-NPESVTIST-KQG--DHLESSYALVCAGLQADEMALKSGCS  270 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~-~~~~v~v~~-~~g--~~i~ad~VV~aaG~~s~~l~~~~g~~  270 (473)
                      ..+.+.|.+.+.+.|++++++++|+++.. +++.+.|+. .+|  .+++||.||-|.|.+| .+.+.++..
T Consensus       103 ~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~~S-~vR~~~~~~  172 (392)
T PRK08243        103 TEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGFHG-VSRASIPAG  172 (392)
T ss_pred             HHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCCCC-chhhhcCcc
Confidence            45677788877888999999999999986 555555554 355  3689999999999998 566666543

>PRK12839 hypothetical protein; Provisional

Probab=99.13  E-value=5.3e-10  Score=114.42  Aligned_cols=61  Identities=16%  Similarity=0.232  Sum_probs=46.6

Q ss_pred             eeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEc-CCeE-E--EEcCCCc-EEE-cCEEEEcCCcChH
Q psy7710         201 VDWGLVTRVMGEEFCELGGEIRLNQQVESFKEN-PESV-T--ISTKQGD-HLE-SSYALVCAGLQAD  261 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v-~--v~~~~g~-~i~-ad~VV~aaG~~s~  261 (473)
                      +++..++..|.+.+++.|++|+++++|++|..+ ++++ .  +...++. .+. ++.||+|||+++.
T Consensus       211 ~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~  277 (572)
T PRK12839        211 VNGTALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN  277 (572)
T ss_pred             ccHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence            467788999999999999999999999999864 3433 2  3444552 344 4899999999964

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.13  E-value=1.6e-09  Score=111.03  Aligned_cols=48  Identities=33%  Similarity=0.402  Sum_probs=40.1

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceE
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVV  106 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~  106 (473)
                      .++||+|||+|.+|+++|+.++++  |.+|+||||.+. .++++..+.|.+
T Consensus         6 ~~~DvvVvG~G~aG~~aA~~aa~~--G~~v~llEk~~~-~gG~~~~~~g~~   53 (557)
T PRK07843          6 QEYDVVVVGSGAAGMVAALTAAHR--GLSTVVVEKAPH-YGGSTARSGGGV   53 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC--CCCEEEEeCCCC-CCccccccCcee
Confidence            578999999999999999999999  999999999854 445555555544

>TIGR02734 crtI_fam phytoene desaturase

Probab=99.12  E-value=7.3e-10  Score=112.88  Aligned_cols=65  Identities=25%  Similarity=0.432  Sum_probs=54.5

Q ss_pred             eEecCCccceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCe-EEEEcCCCcEEEcCEEEEcCCcC
Q psy7710         192 AIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQ  259 (473)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-v~v~~~~g~~i~ad~VV~aaG~~  259 (473)
                      +++.+.+|.   ..+.+.|.+.++++|++|+++++|++|..++++ +.|++.+|++++||.||+|++..
T Consensus       210 g~~~~~gG~---~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~  275 (502)
T TIGR02734       210 GVWFPRGGT---GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLH  275 (502)
T ss_pred             eEEEcCCCH---HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHH
Confidence            455565554   678999999999999999999999999877665 56888888789999999999875

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=99.12  E-value=4.9e-09  Score=103.31  Aligned_cols=64  Identities=22%  Similarity=0.364  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh-HHHHHhcCCCC
Q psy7710         207 TRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA-DEMALKSGCSL  271 (473)
Q Consensus       207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s-~~l~~~~g~~~  271 (473)
                      ...+.+.+++.|++++++++|+++.. ++.+.+++.+|.++.||.||+|+|... ..|++.+|+..
T Consensus       189 ~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~  253 (396)
T PRK09754        189 QRYLLQRHQQAGVRILLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGISANDQLAREANLDT  253 (396)
T ss_pred             HHHHHHHHHHCCCEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCChhhHHHHhcCCCc
Confidence            34466777889999999999999976 455667778887899999999999984 45777777653

>PRK05868 hypothetical protein; Validated

Probab=99.12  E-value=1e-09  Score=107.12  Aligned_cols=62  Identities=10%  Similarity=0.178  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhc
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKS  267 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~  267 (473)
                      ..+.+.|.+. ...|++++++++|++++.+++++.|++.+|.+++||.||-|.|.+| .+.+.+
T Consensus       105 ~~L~~~l~~~-~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~S-~vR~~~  166 (372)
T PRK05868        105 DDLVELLYGA-TQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLHS-NVRRLV  166 (372)
T ss_pred             HHHHHHHHHh-ccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCCc-hHHHHh
Confidence            4455544433 3468999999999999988888999888888899999999999998 455544

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=99.12  E-value=5.9e-09  Score=102.15  Aligned_cols=65  Identities=17%  Similarity=0.393  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh-HHHHHhcCCCC
Q psy7710         207 TRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA-DEMALKSGCSL  271 (473)
Q Consensus       207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s-~~l~~~~g~~~  271 (473)
                      ...+.+.+++.|++++++++|+++..+++.+.+++.+|.++.+|.||+|+|... ..+++.+|+..
T Consensus       186 ~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~  251 (377)
T PRK04965        186 SSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALARRAGLAV  251 (377)
T ss_pred             HHHHHHHHHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchHHHHHCCCCc
Confidence            344667788899999999999999887777778888888899999999999884 46888888764

>PRK07236 hypothetical protein; Provisional

Probab=99.12  E-value=1.6e-09  Score=106.66  Aligned_cols=60  Identities=13%  Similarity=0.239  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhc
Q psy7710         205 LVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKS  267 (473)
Q Consensus       205 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~  267 (473)
                      .+.+.|.+.+  .+++++++++|+++..+++++.|++.+|.+++||.||.|.|.+|. +.+.+
T Consensus       101 ~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~-vR~~l  160 (386)
T PRK07236        101 VLYRALRAAF--PAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRST-VRAQL  160 (386)
T ss_pred             HHHHHHHHhC--CCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCch-HHHHh
Confidence            3445554433  356899999999999888888888888889999999999999984 44444

>PLN02661 Putative thiazole synthesis

Probab=99.11  E-value=2.1e-09  Score=100.79  Aligned_cols=42  Identities=38%  Similarity=0.543  Sum_probs=35.7

Q ss_pred             CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCc
Q psy7710          55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMH   97 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~   97 (473)
                      ..++||+|||||++|+++|++|+++ +|++|+||||...+|++
T Consensus        90 ~~~~DVlIVGaG~AGl~AA~~La~~-~g~kV~viEk~~~~GGG  131 (357)
T PLN02661         90 YADTDVVIVGAGSAGLSCAYELSKN-PNVKVAIIEQSVSPGGG  131 (357)
T ss_pred             cccCCEEEECCHHHHHHHHHHHHHc-CCCeEEEEecCcccccc
Confidence            3468999999999999999999974 27999999998666543

>PLN02985 squalene monooxygenase

Probab=99.11  E-value=3.9e-09  Score=106.66  Aligned_cols=69  Identities=16%  Similarity=0.212  Sum_probs=49.0

Q ss_pred             ceeHHHHHHHHHHHHHHc-CcEEEeCceEEEEEEcCCe---EEEEcCCCc--EEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710         200 IVDWGLVTRVMGEEFCEL-GGEIRLNQQVESFKENPES---VTISTKQGD--HLESSYALVCAGLQADEMALKSGCS  270 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~---v~v~~~~g~--~i~ad~VV~aaG~~s~~l~~~~g~~  270 (473)
                      .++...+.+.|.+.+.+. |++++.+ +|+++..+++.   +.+.+.+|+  +++||.||.|.|.+| .+.+.++..
T Consensus       143 ~i~r~~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S-~vR~~l~~~  217 (514)
T PLN02985        143 SFHNGRFVQRLRQKASSLPNVRLEEG-TVKSLIEEKGVIKGVTYKNSAGEETTALAPLTVVCDGCYS-NLRRSLNDN  217 (514)
T ss_pred             eeecHHHHHHHHHHHHhCCCeEEEee-eEEEEEEcCCEEEEEEEEcCCCCEEEEECCEEEECCCCch-HHHHHhccC
Confidence            345567888899888776 6888755 57777665553   334445663  467999999999998 577777654

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=99.11  E-value=2.1e-09  Score=108.30  Aligned_cols=57  Identities=19%  Similarity=0.341  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      ..+...+.+.++++|++++++++|+++..+++++.+++.+|.++++|.||+|+|...
T Consensus       216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p  272 (461)
T PRK05249        216 DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTG  272 (461)
T ss_pred             HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCc
Confidence            456778888899999999999999999877677777777777899999999999874

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=99.11  E-value=2e-09  Score=110.89  Aligned_cols=44  Identities=23%  Similarity=0.210  Sum_probs=36.2

Q ss_pred             EEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcce
Q psy7710          60 VVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGV  105 (473)
Q Consensus        60 VvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~  105 (473)
                      |+|||+|++|++||+.+++.  |.+|+||||.+.++++++..+.|.
T Consensus         1 VlVVG~G~AGl~AAl~Aae~--G~~VilleK~~~~~~g~s~~a~Gg   44 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAEL--GYHVKLFSYVDAPRRAHSIAAQGG   44 (603)
T ss_pred             CEEECccHHHHHHHHHHHHc--CCCEEEEEecCCCCCccchhhhhh
Confidence            69999999999999999999  999999999854665555544443

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.10  E-value=6.8e-10  Score=97.52  Aligned_cols=156  Identities=17%  Similarity=0.198  Sum_probs=89.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC-CCcc-eEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG-HNSG-VVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK  135 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~-~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (473)
                      .+|+|||+||+|+++|+.|+++  |.+|+|+||+..+||+..+ +..+ .+.-|..|.                      
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~a--G~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYf----------------------   57 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREA--GREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYF----------------------   57 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhc--CcEEEEEEcCCCcccchheeccCCccccccceee----------------------
Confidence            3699999999999999999999  9999999999888876433 2211 111111110                      


Q ss_pred             cCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHh----hcCCcccceeEecCCccceeHHHHHHHHH
Q psy7710         136 RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKT----IEPYCKGVKAIHSPNTGIVDWGLVTRVMG  211 (473)
Q Consensus       136 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~----~~p~~~~~~~~~~~~~~~~~~~~~~~~l~  211 (473)
                                   .  ..-+.+.+..+.+.+.|+  ++.....-...    ..|.-.     -.|   ++-+. =+..|.
T Consensus        58 -------------k--~~~~~F~~~Ve~~~~~gl--V~~W~~~~~~~~~~~~~~~~d-----~~p---yvg~p-gmsala  111 (331)
T COG3380          58 -------------K--PRDELFLRAVEALRDDGL--VDVWTPAVWTFTGDGSPPRGD-----EDP---YVGEP-GMSALA  111 (331)
T ss_pred             -------------c--CCchHHHHHHHHHHhCCc--eeeccccccccccCCCCCCCC-----CCc---cccCc-chHHHH
Confidence                         0  011223333344444443  11111100000    000000     000   11111 123344


Q ss_pred             HHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCC-cEEEcCEEEEcCCcC-hHHHH
Q psy7710         212 EEFCELGGEIRLNQQVESFKENPESVTISTKQG-DHLESSYALVCAGLQ-ADEMA  264 (473)
Q Consensus       212 ~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g-~~i~ad~VV~aaG~~-s~~l~  264 (473)
                      +.+ ....+|+++++|+.+...++.|++++++| ....+|.||++.-+- +..|+
T Consensus       112 k~L-AtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LL  165 (331)
T COG3380         112 KFL-ATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLL  165 (331)
T ss_pred             HHH-hccchhhhhhhhhhheecCCeeEEEecCCCcccccceEEEecCCCcchhhc
Confidence            433 34678899999999999999999999766 467899999998654 44444

>PRK09077 L-aspartate oxidase; Provisional

Probab=99.09  E-value=7.2e-09  Score=105.81  Aligned_cols=176  Identities=13%  Similarity=0.096  Sum_probs=94.7

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccC--CCchhHHHHHHHh-----HHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYY--KPGTLKAKLCVEG-----MNL  128 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~--~~~~~~~~~~~~~-----~~~  128 (473)
                      .++||+|||+|++|+++|+.+++.   .+|+||||.. ..+++|..+.|.+......  .++.........+     .+.
T Consensus         7 ~~~DVlVVG~G~AGl~AA~~aa~~---~~VilveK~~-~~~g~t~~a~Ggi~~~~~~~ds~e~~~~d~~~~g~~~~d~~~   82 (536)
T PRK09077          7 HQCDVLIIGSGAAGLSLALRLAEH---RRVAVLSKGP-LSEGSTFYAQGGIAAVLDETDSIESHVEDTLIAGAGLCDEDA   82 (536)
T ss_pred             ccCCEEEECchHHHHHHHHHHHHC---CCEEEEeccC-CCCCChhhccCCeeeccCCCccHHHHHHHHHHHccCCCCHHH
Confidence            568999999999999999999874   6999999984 5555666665554432211  1111100000000     001


Q ss_pred             HHHHHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCH-H---HHH-hhcCCcccceeEecCCccceeH
Q psy7710         129 AYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSA-E---EIK-TIEPYCKGVKAIHSPNTGIVDW  203 (473)
Q Consensus       129 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~-~---~~~-~~~p~~~~~~~~~~~~~~~~~~  203 (473)
                      .+.+                     .+...+.++++.++|+ .+..... .   ... ..+.... ..-.+...  ....
T Consensus        83 v~~~---------------------~~~~~~~i~~L~~~Gv-~f~~~~~~~g~~~~~~~~~gg~~-~~r~~~~~--~~~G  137 (536)
T PRK09077         83 VRFI---------------------AENAREAVQWLIDQGV-PFTTDEQANGEEGYHLTREGGHS-HRRILHAA--DATG  137 (536)
T ss_pred             HHHH---------------------HHHHHHHHHHHHHcCC-ccccCCCCCccccccccCCCCcc-CCceEecC--CCCH
Confidence            1111                     1222334445555665 2221110 0   000 0000000 00011111  1123


Q ss_pred             HHHHHHHHHHHHHc-CcEEEeCceEEEEEEcC------CeE-EEE--c-CCC--cEEEcCEEEEcCCcCh
Q psy7710         204 GLVTRVMGEEFCEL-GGEIRLNQQVESFKENP------ESV-TIS--T-KQG--DHLESSYALVCAGLQA  260 (473)
Q Consensus       204 ~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~------~~v-~v~--~-~~g--~~i~ad~VV~aaG~~s  260 (473)
                      ..+...|.+.+++. |++|++++.|.++..++      +.+ .|.  . .+|  ..+.|+.||+|+|+++
T Consensus       138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~  207 (536)
T PRK09077        138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGAS  207 (536)
T ss_pred             HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCC
Confidence            46777788877765 89999999999998643      433 233  2 344  3588999999999976

>PRK11445 putative oxidoreductase; Provisional

Probab=99.09  E-value=4.9e-09  Score=101.56  Aligned_cols=67  Identities=10%  Similarity=0.044  Sum_probs=51.1

Q ss_pred             eeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEc-CCCc--EEEcCEEEEcCCcChHHHHHhcCC
Q psy7710         201 VDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTIST-KQGD--HLESSYALVCAGLQADEMALKSGC  269 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~-~~g~--~i~ad~VV~aaG~~s~~l~~~~g~  269 (473)
                      ++...+-+.|.+. .+.|+++++++.|+++..+++++.|.+ .+|.  +++||.||.|+|..| .+.+.++.
T Consensus        96 i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S-~vr~~l~~  165 (351)
T PRK11445         96 IDRHKFDLWLKSL-IPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANS-MVRRHLYP  165 (351)
T ss_pred             ccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCc-HHhHHhcC
Confidence            5556666666664 467899999999999998888887764 4553  689999999999998 45555543

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=1.1e-09  Score=102.18  Aligned_cols=58  Identities=21%  Similarity=0.219  Sum_probs=48.6

Q ss_pred             eHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChH
Q psy7710         202 DWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD  261 (473)
Q Consensus       202 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~  261 (473)
                      ....+.+.+.+.++..|+++.. ..|.++...++.+.|+|+++ +++|+.||+|+|....
T Consensus        59 ~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~-~~~ak~vIiAtG~~~~  116 (305)
T COG0492          59 LGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKG-TYEAKAVIIATGAGAR  116 (305)
T ss_pred             chHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCC-eEEEeEEEECcCCccc
Confidence            3466788888899899999986 77888877665788999999 5999999999999874

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=99.07  E-value=2.4e-09  Score=105.47  Aligned_cols=57  Identities=12%  Similarity=0.198  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCC-e-EEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPE-S-VTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~-v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      ..+.+.+.+.++..|++++++++|++|..+++ . +.|++.+|++++|+.||.....+.
T Consensus       232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p  290 (443)
T PTZ00363        232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFP  290 (443)
T ss_pred             HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccccc
Confidence            56888899999999999999999999987753 3 568888888999999998776664

>TIGR00136 gidA glucose-inhibited division protein A

Probab=99.07  E-value=1.3e-09  Score=109.38  Aligned_cols=65  Identities=14%  Similarity=0.176  Sum_probs=51.4

Q ss_pred             EecCCccceeHHHHHHHHHHHHHHc-CcEEEeCceEEEEEEc-C-CeEEEEcCCCcEEEcCEEEEcCCcC
Q psy7710         193 IHSPNTGIVDWGLVTRVMGEEFCEL-GGEIRLNQQVESFKEN-P-ESVTISTKQGDHLESSYALVCAGLQ  259 (473)
Q Consensus       193 ~~~~~~~~~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~-~-~~v~v~~~~g~~i~ad~VV~aaG~~  259 (473)
                      ++.+. +.+|+..+...+.+.+++. |++++ ...|+++..+ + ..+.|.+.+|..+.|+.||+|+|.|
T Consensus        86 V~~~R-aQVDr~~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtf  153 (617)
T TIGR00136        86 VRATR-AQIDKVLYRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTF  153 (617)
T ss_pred             ccccH-HhCCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCcc
Confidence            34444 6789999999999999887 77876 4567777654 3 4456888888789999999999999

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=99.07  E-value=9.3e-11  Score=116.32  Aligned_cols=155  Identities=23%  Similarity=0.246  Sum_probs=36.4

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHhcCC
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNI  138 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (473)
                      ||||||||++|++||+.+++.  |.+|+|||+.+.+|+..+......+...     .. ..   ......+.++.+... 
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~--G~~VlLiE~~~~lGG~~t~~~~~~~~~~-----~~-~~---~~~~gi~~e~~~~~~-   68 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARA--GAKVLLIEKGGFLGGMATSGGVSPFDGN-----HD-ED---QVIGGIFREFLNRLR-   68 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHT--TS-EEEE-SSSSSTGGGGGSSS-EETTE-----EH-HH---HHHHHHHHHHHHST--
T ss_pred             CEEEECccHHHHHHHHHHHHC--CCEEEEEECCccCCCcceECCcCChhhc-----ch-hh---ccCCCHHHHHHHHHh-
Confidence            899999999999999999999  9999999999877765544332222110     00 00   000111112211110 


Q ss_pred             CCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHHHcC
Q psy7710         139 PYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELG  218 (473)
Q Consensus       139 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G  218 (473)
                                                 ..+.  .    ...     .. .    .| .....++|..+...+.+.+++.|
T Consensus        69 ---------------------------~~~~--~----~~~-----~~-~----~~-~~~~~~~~~~~~~~l~~~l~e~g  104 (428)
T PF12831_consen   69 ---------------------------ARGG--Y----PQE-----DR-Y----GW-VSNVPFDPEVFKAVLDEMLAEAG  104 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ---------------------------hhcc--c----ccc-----cc-c----cc-ccccccccccccccccccccccc
Confidence                                       0000  0    000     00 0    00 00013455556666777778889


Q ss_pred             cEEEeCceEEEEEEcCCeEE-EE--cCCC-cEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710         219 GEIRLNQQVESFKENPESVT-IS--TKQG-DHLESSYALVCAGLQADEMALKSGCSL  271 (473)
Q Consensus       219 v~i~~~~~V~~i~~~~~~v~-v~--~~~g-~~i~ad~VV~aaG~~s~~l~~~~g~~~  271 (473)
                      ++|++++.|.++..+++++. |.  +.+| .+++||.||-|||-  ..|+..+|.+.
T Consensus       105 v~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~--g~l~~~aG~~~  159 (428)
T PF12831_consen  105 VEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD--GDLAALAGAPY  159 (428)
T ss_dssp             ---------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc--ccccccccccc
Confidence            99999999999998875543 43  3334 57999999999994  36777777764

>PRK06116 glutathione reductase; Validated

Probab=99.06  E-value=2.1e-09  Score=107.89  Aligned_cols=57  Identities=16%  Similarity=0.267  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCe-EEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      ..+...+.+.+++.|++++++++|.++..++++ +.+++.+|.++++|.||+|+|...
T Consensus       208 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p  265 (450)
T PRK06116        208 PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREP  265 (450)
T ss_pred             HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCc
Confidence            456778888899999999999999999876544 677777777899999999999863

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=99.06  E-value=1.9e-09  Score=110.51  Aligned_cols=112  Identities=19%  Similarity=0.306  Sum_probs=80.8

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK  135 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (473)
                      ..+||+|||||++|+++|..|+++  |++|+|+|++ .+|+......      ..                         
T Consensus         3 ~~yDVvIIGgGpAGL~AA~~lar~--g~~V~liE~~-~~GG~~~~~~------~i-------------------------   48 (555)
T TIGR03143         3 EIYDLIIIGGGPAGLSAGIYAGRA--KLDTLIIEKD-DFGGQITITS------EV-------------------------   48 (555)
T ss_pred             CcCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecC-CCCceEEecc------cc-------------------------
Confidence            468999999999999999999999  9999999997 5543211000      00                         


Q ss_pred             cCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHH
Q psy7710         136 RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC  215 (473)
Q Consensus       136 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  215 (473)
                                                     ..++...                          ...+..+.+.+.+.++
T Consensus        49 -------------------------------~~~pg~~--------------------------~~~~~~l~~~l~~~~~   71 (555)
T TIGR03143        49 -------------------------------VNYPGIL--------------------------NTTGPELMQEMRQQAQ   71 (555)
T ss_pred             -------------------------------ccCCCCc--------------------------CCCHHHHHHHHHHHHH
Confidence                                           0000000                          1122456667777888


Q ss_pred             HcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         216 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       216 ~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      +.|++++ +++|+.+..+++.+.|.+.++ .+.++.||+|+|++.
T Consensus        72 ~~gv~~~-~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p  114 (555)
T TIGR03143        72 DFGVKFL-QAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASP  114 (555)
T ss_pred             HcCCEEe-ccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCcc
Confidence            8899985 788999988776677888777 789999999999975

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=99.05  E-value=1.6e-09  Score=103.26  Aligned_cols=58  Identities=22%  Similarity=0.286  Sum_probs=47.3

Q ss_pred             ceeHHHHHHHHHHHHHH-cCcEEEeCceEEEEEEcCCeE-EEEcCCCcEEEcCEEEEcCCc
Q psy7710         200 IVDWGLVTRVMGEEFCE-LGGEIRLNQQVESFKENPESV-TISTKQGDHLESSYALVCAGL  258 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~v-~v~~~~g~~i~ad~VV~aaG~  258 (473)
                      .+|-..|.+.+.+.+++ .+++|+ +.+|++|..+++.+ .|.+.+|..+.+|.||+|||.
T Consensus        91 qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   91 QVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             EE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             hccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence            57778899999999987 577885 78999999887765 599999989999999999999

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.04  E-value=8.8e-09  Score=102.67  Aligned_cols=45  Identities=22%  Similarity=0.268  Sum_probs=38.6

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcC--CCCeEEEEeccCcccCcccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNY--PKMKICLVEKEKELGMHQTG  100 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~--~G~~V~viE~~~~~g~~~s~  100 (473)
                      ...+|+|||||++||++|++|++.+  +|.+|+|+|+.+.+||...+
T Consensus        21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~   67 (576)
T PRK13977         21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDG   67 (576)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccC
Confidence            3578999999999999999999864  47899999999888877543

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=99.03  E-value=3.3e-09  Score=100.84  Aligned_cols=44  Identities=30%  Similarity=0.534  Sum_probs=40.2

Q ss_pred             CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC
Q psy7710          55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG  100 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~  100 (473)
                      ...+||+|||+|++||++|++|.+.  |.+|+|+|.++++|+++..
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~ka--G~~v~ilEar~r~GGR~~t   48 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKA--GYQVQILEARDRVGGRSLT   48 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhc--CcEEEEEeccCCcCceeEE
Confidence            3678999999999999999999999  9999999999999988654

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=99.03  E-value=3.8e-09  Score=107.58  Aligned_cols=58  Identities=12%  Similarity=0.143  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         203 WGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      +..+.+.+.+.+++.|++++++++|.++..+++.+.|++.+|.++++|.||+|+|...
T Consensus       265 ~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~  322 (517)
T PRK15317        265 GPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARW  322 (517)
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCc
Confidence            3557778888899999999999999999988778888887777899999999999864

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=99.02  E-value=2.7e-09  Score=106.41  Aligned_cols=184  Identities=15%  Similarity=0.107  Sum_probs=95.3

Q ss_pred             EEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc-CcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHhcCCCC
Q psy7710          62 VVGGGIVGVATARELKLNYPKMKICLVEKEKELG-MHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNIPY  140 (473)
Q Consensus        62 IIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g-~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (473)
                      |||+|++|+++|++++++  |.+|+||||.+... ++.+..+.+....   .........-.....+.+.++.+..+...
T Consensus         1 VVG~G~AGl~AA~~Aa~~--Ga~V~vlEK~~~~~~Gg~s~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARRA--GASVLLLEAAPRARRGGNARHGRNIRVA---HDIPTDFQRDSYPAEEFERDLAPVTGGRT   75 (432)
T ss_pred             CCcccHHHHHHHHHHHhC--CCcEEEEeCCCCCcCCcCcccccchhhc---ccchhhhhhhhccHHHHHHHHHHhhCCCC
Confidence            799999999999999999  99999999985322 2333222111110   00000000000011122222222111000


Q ss_pred             cccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHHHcCcE
Q psy7710         141 KKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGE  220 (473)
Q Consensus       141 ~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~  220 (473)
                      +. ..+..    -.+...+.++++.++|+ .++.....    ..|...  ...+...    ....+++.|.+.+++.|++
T Consensus        76 d~-~l~~~----~~~~s~~~i~wl~~~Gv-~f~~~~~g----~~~~~~--~~~~~~~----~g~~l~~~L~~~a~~~Gv~  139 (432)
T TIGR02485        76 NE-SLSRL----GIGRGSRDLRWAFAHGV-HLQPPAAG----NLPYSR--RTAFLRG----GGKALTNALYSSAERLGVE  139 (432)
T ss_pred             CH-HHHHH----HHhcchhHHHHHHhCCc-eeeecCCC----CccccC--ceeeecC----CHHHHHHHHHHHHHHcCCE
Confidence            00 00000    01112334555666666 33221100    001000  0111111    2356888999999999999


Q ss_pred             EEeCceEEEEEEc--CCeE-EEEcC-CCcEEEcCEEEEcCCcCh--HHHHHh
Q psy7710         221 IRLNQQVESFKEN--PESV-TISTK-QGDHLESSYALVCAGLQA--DEMALK  266 (473)
Q Consensus       221 i~~~~~V~~i~~~--~~~v-~v~~~-~g~~i~ad~VV~aaG~~s--~~l~~~  266 (473)
                      |+++++|++|..+  ++.+ .|.+. ++..++|+.||+|+|.++  .++.+.
T Consensus       140 i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~~  191 (432)
T TIGR02485       140 IRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLRK  191 (432)
T ss_pred             EEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHHh
Confidence            9999999999876  3433 34433 335799999999999884  355543

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=99.02  E-value=9.4e-09  Score=102.90  Aligned_cols=45  Identities=31%  Similarity=0.420  Sum_probs=37.6

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceE
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVV  106 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~  106 (473)
                      +|||+|||||++|+++|+.++++  |++|+|+|+. .+||.  +.+.|++
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~--G~~V~lie~~-~~GG~--c~~~gci   46 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANH--GAKVAIAEEP-RVGGT--CVIRGCV   46 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhC--CCcEEEEecC-ccCce--eecCCcC
Confidence            58999999999999999999999  9999999996 66643  3445543

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=99.02  E-value=5e-09  Score=104.08  Aligned_cols=59  Identities=12%  Similarity=0.205  Sum_probs=48.8

Q ss_pred             eeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChH
Q psy7710         201 VDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD  261 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~  261 (473)
                      ++...+.+.|.+.+.  +..++++++|++|..++++|.|.+.+|.++++|.||.|.|.+|.
T Consensus       102 i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~  160 (414)
T TIGR03219       102 VHRADFLDALLKHLP--EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSA  160 (414)
T ss_pred             CCHHHHHHHHHHhCC--CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence            455667777777663  35678999999999888889898888878999999999999984

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=99.02  E-value=9.1e-09  Score=101.15  Aligned_cols=65  Identities=14%  Similarity=0.176  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEE-cCCeEEEEcC-CCc--EEEcCEEEEcCCcChHHHHHhcCC
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKE-NPESVTISTK-QGD--HLESSYALVCAGLQADEMALKSGC  269 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~-~~~~v~v~~~-~g~--~i~ad~VV~aaG~~s~~l~~~~g~  269 (473)
                      ..+.+.|.+.+.+.|+.++++++++.+.. +++.+.|+.. +|.  +++||.||-|.|.+| .+.+.++.
T Consensus       103 ~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~~S-~VR~~l~~  171 (390)
T TIGR02360       103 TEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGFHG-VSRASIPA  171 (390)
T ss_pred             HHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCCch-hhHHhcCc
Confidence            45677788888888999999998887765 4444555543 553  689999999999998 46665543

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK06475 salicylate hydroxylase; Provisional

Probab=99.01  E-value=3.6e-09  Score=104.58  Aligned_cols=68  Identities=18%  Similarity=0.326  Sum_probs=53.1

Q ss_pred             eeHHHHHHHHHHHHHH-cCcEEEeCceEEEEEEcCCeEEEEc---CCCcEEEcCEEEEcCCcChHHHHHhcCC
Q psy7710         201 VDWGLVTRVMGEEFCE-LGGEIRLNQQVESFKENPESVTIST---KQGDHLESSYALVCAGLQADEMALKSGC  269 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~v~v~~---~~g~~i~ad~VV~aaG~~s~~l~~~~g~  269 (473)
                      ++-..+.+.|.+.+.+ .|++++++++|+++..+++++.+++   .++++++||.||-|.|.+| .+.+.++.
T Consensus       104 i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIgADG~~S-~vR~~~~~  175 (400)
T PRK06475        104 CHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWS-MLRAKAGF  175 (400)
T ss_pred             ECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEECCCccH-hHHhhcCC
Confidence            4456788888888866 4899999999999998877776654   3345799999999999998 45565554

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=99.01  E-value=1.3e-08  Score=104.45  Aligned_cols=175  Identities=14%  Similarity=0.134  Sum_probs=90.1

Q ss_pred             cEEEEcCChHHHHHHHHHH----hcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHH
Q psy7710          59 DVVVVGGGIVGVATARELK----LNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFD  134 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~----~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (473)
                      ||+|||+|++|++||+.++    ++  |.+|+|+||.. +++.++ .+.|....+......     ....+.+.+.+...
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~--G~~VilieK~~-~~~s~s-~A~G~~gi~~~~~~~-----~g~Ds~e~~~~d~~   71 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKK--GLKIVLVEKAN-LERSGA-VAQGLSAINTYLGTR-----FGENNAEDYVRYVR   71 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhC--CCeEEEEEccC-CCCCCc-cccccchhhhhhhcc-----cCCCCHHHHHHHHH
Confidence            7999999999999999998    67  89999999984 442222 344422111000000     00001111111111


Q ss_pred             hcCCCCcccCeEEEEeCc----ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHH
Q psy7710         135 KRNIPYKKCGKLIVALNE----QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVM  210 (473)
Q Consensus       135 ~~~~~~~~~g~l~~~~~~----~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l  210 (473)
                      ..+..        +...+    -.+...+.++++.++|+ .+.......  ...    ..+......    ....+.+.+
T Consensus        72 ~~~~g--------l~d~~lV~~lv~~s~~~i~~L~~~Gv-~F~~~~~~G--~~~----~~g~~~~~~----gG~~~~r~l  132 (614)
T TIGR02061        72 TDLMG--------LVREDLIFDMARHVDDSVHLFEEWGL-PLWIKPEDG--KYV----REGRWQIMI----HGESYKPIV  132 (614)
T ss_pred             HhcCC--------CCcHHHHHHHHHHHHHHHHHHHHcCC-CceecCCCC--ccc----cCCCcccCc----CchhHHHHH
Confidence            10000        00000    12233455566666776 333210000  000    000000001    123445556


Q ss_pred             HHHHHHcCcEEEeCceEEEEEEcC---CeE-EEE---cCCC--cEEEcCEEEEcCCcChH
Q psy7710         211 GEEFCELGGEIRLNQQVESFKENP---ESV-TIS---TKQG--DHLESSYALVCAGLQAD  261 (473)
Q Consensus       211 ~~~~~~~Gv~i~~~~~V~~i~~~~---~~v-~v~---~~~g--~~i~ad~VV~aaG~~s~  261 (473)
                      ...+++.+++++.++.|+++..++   +.+ .|.   ..+|  ..+.|+.||+|||+++.
T Consensus       133 ~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~  192 (614)
T TIGR02061       133 AEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAVN  192 (614)
T ss_pred             HHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcccc
Confidence            666667778999999999999754   333 332   2344  35789999999999864

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=99.00  E-value=4.1e-08  Score=101.90  Aligned_cols=70  Identities=16%  Similarity=0.275  Sum_probs=52.6

Q ss_pred             eeHHHHHHHHHHHHHHcCc--EEEeCceEEEEEEcC---CeEEEEcC------CC--cEEEcCEEEEcCCcChHHHHHhc
Q psy7710         201 VDWGLVTRVMGEEFCELGG--EIRLNQQVESFKENP---ESVTISTK------QG--DHLESSYALVCAGLQADEMALKS  267 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~~Gv--~i~~~~~V~~i~~~~---~~v~v~~~------~g--~~i~ad~VV~aaG~~s~~l~~~~  267 (473)
                      ++-..+.+.|.+.+.+.|.  ++.++++|+++..++   ..|+|+..      +|  ++++||+||-|.|+.| .+.+.+
T Consensus       138 l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S-~VR~~l  216 (634)
T PRK08294        138 VNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARS-RVRKAI  216 (634)
T ss_pred             eCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCch-HHHHhc
Confidence            4445677788888887764  778899999998764   23555442      34  5799999999999998 678888


Q ss_pred             CCCC
Q psy7710         268 GCSL  271 (473)
Q Consensus       268 g~~~  271 (473)
                      |++.
T Consensus       217 gi~~  220 (634)
T PRK08294        217 GREL  220 (634)
T ss_pred             CCCc
Confidence            8765

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.00  E-value=1.8e-08  Score=101.44  Aligned_cols=47  Identities=28%  Similarity=0.278  Sum_probs=38.6

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceE
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVV  106 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~  106 (473)
                      .+|||+|||||++|+++|..|++.  |++|+|||+.+.+|+.  +.|.|++
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~~--G~~V~lie~~~~~GG~--c~n~gci   49 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAADL--GLETVCVERYSTLGGV--CLNVGCI   49 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCccccc--ccCCCcc
Confidence            469999999999999999999999  9999999987555533  3555543

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.99  E-value=4.6e-09  Score=105.14  Aligned_cols=57  Identities=19%  Similarity=0.303  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChH
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD  261 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~  261 (473)
                      ..+...+.+.++++|++++++++|+++..+++.+.+.++++ ++.+|.||+|+|...+
T Consensus       199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn  255 (441)
T PRK08010        199 RDIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPA  255 (441)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcC
Confidence            56778888899999999999999999988777777777666 7899999999998853

>PLN02676 polyamine oxidase

Probab=98.99  E-value=1e-08  Score=103.21  Aligned_cols=56  Identities=21%  Similarity=0.378  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHc------CcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcC
Q psy7710         204 GLVTRVMGEEFCEL------GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ  259 (473)
Q Consensus       204 ~~~~~~l~~~~~~~------Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~  259 (473)
                      ..+.+.|.+.+.+.      +.+|+++++|++|..++++|.|++.+|.+++||+||+|....
T Consensus       224 ~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~  285 (487)
T PLN02676        224 ESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLG  285 (487)
T ss_pred             HHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChH
Confidence            45566666655332      367999999999999888999999999889999999999754

>PRK07538 hypothetical protein; Provisional

Probab=98.99  E-value=6.1e-09  Score=103.40  Aligned_cols=67  Identities=12%  Similarity=0.218  Sum_probs=49.4

Q ss_pred             eeHHHHHHHHHHHHHH-cCc-EEEeCceEEEEEEcCCeEEEEcCC-----CcEEEcCEEEEcCCcChHHHHHhcC
Q psy7710         201 VDWGLVTRVMGEEFCE-LGG-EIRLNQQVESFKENPESVTISTKQ-----GDHLESSYALVCAGLQADEMALKSG  268 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~-~Gv-~i~~~~~V~~i~~~~~~v~v~~~~-----g~~i~ad~VV~aaG~~s~~l~~~~g  268 (473)
                      ++...+.+.|.+.+.+ .|. +|+++++|+++..+++++.+.+.+     +.+++||.||.|.|.+| .+.+.++
T Consensus        99 i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIgADG~~S-~vR~~l~  172 (413)
T PRK07538         99 IHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIGADGIHS-AVRAQLY  172 (413)
T ss_pred             EEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEECCCCCH-HHhhhhc
Confidence            5566788888888765 464 699999999998776655444322     24899999999999998 4555554

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=98.98  E-value=1e-08  Score=103.51  Aligned_cols=54  Identities=11%  Similarity=0.209  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcC
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ  259 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~  259 (473)
                      ..+.+.|.+.+.+  ++|+++++|++|..+++++.|++.+|..+.||.||+|+-..
T Consensus       226 ~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~~  279 (463)
T PRK12416        226 STIIDRLEEVLTE--TVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPHD  279 (463)
T ss_pred             HHHHHHHHHhccc--ccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCHH
Confidence            4566666666643  58999999999999888898888887789999999999644

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=98.97  E-value=9.1e-09  Score=105.34  Aligned_cols=66  Identities=17%  Similarity=0.271  Sum_probs=49.7

Q ss_pred             eeHHHHHHHHHHHHHHcCc-EEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCC
Q psy7710         201 VDWGLVTRVMGEEFCELGG-EIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGC  269 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~~Gv-~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~  269 (473)
                      +.-..+.+.|.+.+   +. .++++++|+++..+++.+.|++.+|.++++|.||.|.|.+|..-...++.
T Consensus       191 I~R~~L~~~L~~al---g~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S~vR~~l~g~  257 (668)
T PLN02927        191 ISRMTLQQILARAV---GEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWSKVRNNLFGR  257 (668)
T ss_pred             EeHHHHHHHHHhhC---CCCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCcHHHHHhcCC
Confidence            44455666665543   33 46788999999988889999888887899999999999998544444453

>PRK14694 putative mercuric reductase; Provisional

Probab=98.97  E-value=2.2e-08  Score=100.91  Aligned_cols=56  Identities=21%  Similarity=0.246  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      ..+...+.+.+++.|+++++++.|+++..+++.+.+.++++ ++++|.||+|+|...
T Consensus       218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~p  273 (468)
T PRK14694        218 PAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAG-TLRAEQLLVATGRTP  273 (468)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEEEEccCCCC
Confidence            45778888999999999999999999987777667777666 799999999999884

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.97  E-value=1e-08  Score=104.30  Aligned_cols=57  Identities=12%  Similarity=0.226  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      ..+...+.+.+++.|++++++++|+++..+++.+.+++.+|..+.+|.+|+|+|...
T Consensus       267 ~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~  323 (515)
T TIGR03140       267 SQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARW  323 (515)
T ss_pred             HHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence            456677888888889999999999999887777888887777899999999999864

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK07208 hypothetical protein; Provisional

Probab=98.97  E-value=2.6e-08  Score=101.01  Aligned_cols=56  Identities=18%  Similarity=0.370  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeE-E-EEc--CCC--cEEEcCEEEEcCCcC
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESV-T-IST--KQG--DHLESSYALVCAGLQ  259 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v-~-v~~--~~g--~~i~ad~VV~aaG~~  259 (473)
                      ..+.+.|.+.+++.|++|+++++|++|..+++++ . +..  .+|  ..+.||.||.|+..+
T Consensus       218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~  279 (479)
T PRK07208        218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPLR  279 (479)
T ss_pred             chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCHH
Confidence            5688889999999999999999999999887643 2 322  234  258899999999876

>PRK09897 hypothetical protein; Provisional

Probab=98.96  E-value=2.2e-08  Score=100.73  Aligned_cols=53  Identities=13%  Similarity=0.036  Sum_probs=41.9

Q ss_pred             HHHHHHHHHcC--cEEEeCceEEEEEEcCCeEEEEcCC-CcEEEcCEEEEcCCcCh
Q psy7710         208 RVMGEEFCELG--GEIRLNQQVESFKENPESVTISTKQ-GDHLESSYALVCAGLQA  260 (473)
Q Consensus       208 ~~l~~~~~~~G--v~i~~~~~V~~i~~~~~~v~v~~~~-g~~i~ad~VV~aaG~~s  260 (473)
                      ..+.+.+.+.|  ++++.+++|++|..+++++.|++.+ +..+.+|.||+|+|...
T Consensus       111 ~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~~  166 (534)
T PRK09897        111 LRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVW  166 (534)
T ss_pred             HHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCCC
Confidence            34455556666  7888899999999888888888755 45789999999999753

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.95  E-value=2.3e-08  Score=100.05  Aligned_cols=56  Identities=18%  Similarity=0.178  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      ..+...+.+.+++.|++++++++|+++..+++.+.+.++ +.++.+|.||+|+|...
T Consensus       198 ~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v~v~~~-g~~i~~D~viva~G~~p  253 (438)
T PRK07251        198 PSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQVLVVTE-DETYRFDALLYATGRKP  253 (438)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEEEEEEC-CeEEEcCEEEEeeCCCC
Confidence            456667778888999999999999999877666666554 45899999999999874

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.94  E-value=3.4e-08  Score=99.71  Aligned_cols=45  Identities=36%  Similarity=0.479  Sum_probs=37.8

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcce
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGV  105 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~  105 (473)
                      ..|||+|||||++|+++|..|++.  |++|+|+|+. .+||.  +.+.|+
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~--G~~v~lie~~-~~GG~--c~~~gc   47 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQL--GLKTALVEKG-KLGGT--CLHKGC   47 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhC--CCeEEEEEcc-CCCcc--eEcCCc
Confidence            579999999999999999999999  9999999997 66544  334444

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.94  E-value=5.3e-08  Score=98.20  Aligned_cols=57  Identities=25%  Similarity=0.380  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCC--cEEEcCEEEEcCCcCh
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQG--DHLESSYALVCAGLQA  260 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g--~~i~ad~VV~aaG~~s  260 (473)
                      ..+...+.+.+++.|++++++++|.++..+++.+.+++.+|  .++.+|.||+|+|...
T Consensus       211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p  269 (461)
T TIGR01350       211 AEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKP  269 (461)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcc
Confidence            45677788889999999999999999988777777776666  4799999999999874

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.94  E-value=2e-08  Score=101.07  Aligned_cols=53  Identities=13%  Similarity=0.187  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcC
Q psy7710         205 LVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ  259 (473)
Q Consensus       205 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~  259 (473)
                      .+.+.+.+.+...  +|+++++|++|..+++++.|.+.+|+++.||.||+|+...
T Consensus       222 ~l~~~l~~~l~~~--~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~  274 (451)
T PRK11883        222 SLIEALEEKLPAG--TIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHP  274 (451)
T ss_pred             HHHHHHHHhCcCC--eEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHH
Confidence            4455555544332  8999999999998888888888888789999999999765

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=98.93  E-value=2.2e-08  Score=101.79  Aligned_cols=56  Identities=11%  Similarity=0.089  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeE-EEEcCCC-----cEEEcCEEEEcCCcC
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESV-TISTKQG-----DHLESSYALVCAGLQ  259 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v-~v~~~~g-----~~i~ad~VV~aaG~~  259 (473)
                      ..+.++|.+.++++|++|+++++|++|..+++.+ .|.+.++     +++.||.||.++...
T Consensus       232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~  293 (492)
T TIGR02733       232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQ  293 (492)
T ss_pred             HHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence            6789999999999999999999999999876642 2333222     478999999999875

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.93  E-value=3e-08  Score=99.24  Aligned_cols=38  Identities=42%  Similarity=0.608  Sum_probs=34.4

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMH   97 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~   97 (473)
                      +|||+|||||++|+++|..|++.  |.+|+|+|+. .+||.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~--G~~V~liE~~-~~GG~   39 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEH--GAKALLVEAK-KLGGT   39 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC--CCcEEEeccc-ccccc
Confidence            58999999999999999999999  9999999997 56543

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.93  E-value=3.8e-08  Score=99.18  Aligned_cols=57  Identities=19%  Similarity=0.420  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCC---cEEEcCEEEEcCCcCh
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQG---DHLESSYALVCAGLQA  260 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g---~~i~ad~VV~aaG~~s  260 (473)
                      ..+...+.+.++++|++++++++|+++..+++.+.+.+.++   .++.+|.||+|+|...
T Consensus       213 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p  272 (462)
T PRK06416        213 KEISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRP  272 (462)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCcc
Confidence            45677888889999999999999999988777777766554   5799999999999874

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.93  E-value=2.3e-08  Score=98.36  Aligned_cols=70  Identities=20%  Similarity=0.362  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCc--EEEcCEEEEcCCcCh--HHH-HHhcCCCCC
Q psy7710         203 WGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGD--HLESSYALVCAGLQA--DEM-ALKSGCSLE  272 (473)
Q Consensus       203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~--~i~ad~VV~aaG~~s--~~l-~~~~g~~~~  272 (473)
                      ...+.+.+.+.+++.|++++++++|+++...++++.+++++|.  ++++|.|++|+|-..  ..| ++.+|++.+
T Consensus       213 D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~  287 (454)
T COG1249         213 DPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELD  287 (454)
T ss_pred             CHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceEC
Confidence            4678888999999989999999999999988776777776664  688999999999762  222 566666653

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.92  E-value=1.4e-08  Score=102.57  Aligned_cols=186  Identities=15%  Similarity=0.049  Sum_probs=101.9

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCC----chhHHHHHHHhHHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKP----GTLKAKLCVEGMNLAYE  131 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~  131 (473)
                      .++||+|||||.+||.+|..++++  |.+|+|+||.+..+ +.|..+.|.+........    ++..        ..+.+
T Consensus         5 ~~~DvvVIG~G~AGl~AAi~aa~~--g~~V~l~~K~~~~r-g~t~~a~gG~~a~~~~~~~~~~ds~e--------~~~~d   73 (562)
T COG1053           5 HEFDVVVIGGGGAGLRAAIEAAEA--GLKVALLSKAPPKR-GHTVAAQGGINAALGNTVDVEGDSPE--------LHFYD   73 (562)
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhc--CCcEEEEEccccCC-CchhhhcccccccccCcccccCCCHH--------HHHHH
Confidence            679999999999999999999999  89999999995444 655555555544332111    1110        01111


Q ss_pred             HHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHH
Q psy7710         132 YFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMG  211 (473)
Q Consensus       132 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~  211 (473)
                      ..+..+...++.- +..    -.....+.+..+.++|.+-.+..+..-....+......   ..+..+.-....++..|.
T Consensus        74 tvkg~d~l~dqd~-i~~----~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~---rt~~~~~~tG~~ll~~L~  145 (562)
T COG1053          74 TVKGGDGLGDQDA-VEA----FADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKP---RTCFAADKTGHELLHTLY  145 (562)
T ss_pred             HHhccCCcCCHHH-HHH----HHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCC---cceecCCCCcHHHHHHHH
Confidence            1110000000000 000    01122334455566665333333332111111111110   111122222456888888


Q ss_pred             HHHHH-cCcEEEeCceEEEEEEcCCe-E-E---EEcCCC--cEEEcCEEEEcCCcCh
Q psy7710         212 EEFCE-LGGEIRLNQQVESFKENPES-V-T---ISTKQG--DHLESSYALVCAGLQA  260 (473)
Q Consensus       212 ~~~~~-~Gv~i~~~~~V~~i~~~~~~-v-~---v~~~~g--~~i~ad~VV~aaG~~s  260 (473)
                      +++.+ .+++++.+..+.++..++++ + .   +...+|  ..++++.||+|||+..
T Consensus       146 ~~~~~~~~~~~~~~~~~~~l~~~~~~~v~Gvv~~~~~~g~~~~~~akavilaTGG~g  202 (562)
T COG1053         146 EQLLKFSGIEIFDEYFVLDLLVDDGGGVAGVVARDLRTGELYVFRAKAVILATGGAG  202 (562)
T ss_pred             HHHHHhhcchhhhhhhhhhheecCCCcEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence            88887 67789999999999866432 2 2   334445  3567899999999876

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=98.91  E-value=9.4e-09  Score=103.80  Aligned_cols=44  Identities=32%  Similarity=0.523  Sum_probs=39.0

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCC--CCeEEEEeccCcccCcccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYP--KMKICLVEKEKELGMHQTG  100 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~--G~~V~viE~~~~~g~~~s~  100 (473)
                      +.||+|||||++||++|++|+++++  |.+|+|+|+.+++||...+
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t   47 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQT   47 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEE
Confidence            3689999999999999999999865  7899999999999887654

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.91  E-value=8.2e-09  Score=98.83  Aligned_cols=174  Identities=13%  Similarity=0.141  Sum_probs=97.2

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCc--hhHHHHHHHh-----HHHHHH
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPG--TLKAKLCVEG-----MNLAYE  131 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~  131 (473)
                      ||+|||+|++||++|+.|++.   .+|+|+-|. ..+..+|..+.|.+...+..+.+  .....-...+     .+..+.
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~---~~V~vltk~-~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~   84 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS---FRVTVLTKG-PLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEF   84 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC---CcEEEEeCC-CCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHH
Confidence            899999999999999999986   799999998 56667787887777765533221  1100000000     000000


Q ss_pred             HHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHH-HhhcCCcccceeEecCCccceeHHHHHHHH
Q psy7710         132 YFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEI-KTIEPYCKGVKAIHSPNTGIVDWGLVTRVM  210 (473)
Q Consensus       132 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l  210 (473)
                      +                     ...-...++++..+|+ .+.--....+ ..++.......-++...   --...++..|
T Consensus        85 i---------------------v~~~~~ai~~Li~~Gv-~FDr~~~g~~~lt~EggHS~rRIlH~~~---~TG~~I~~~L  139 (518)
T COG0029          85 I---------------------VSEAPEAIEWLIDLGV-PFDRDEDGRLHLTREGGHSRRRILHAAD---ATGKEIMTAL  139 (518)
T ss_pred             H---------------------HHhHHHHHHHHHHcCC-CCcCCCCCceeeeeecccCCceEEEecC---CccHHHHHHH
Confidence            0                     0111223333334443 1110000000 00000000000011111   1236688888


Q ss_pred             HHHHHH-cCcEEEeCceEEEEEEcCC-eE-EEEc--CCC--cEEEcCEEEEcCCcChH
Q psy7710         211 GEEFCE-LGGEIRLNQQVESFKENPE-SV-TIST--KQG--DHLESSYALVCAGLQAD  261 (473)
Q Consensus       211 ~~~~~~-~Gv~i~~~~~V~~i~~~~~-~v-~v~~--~~g--~~i~ad~VV~aaG~~s~  261 (473)
                      .+.+++ .+++++.++.+.+|..+++ .+ .|.+  .++  ..+.++.||+|||+.+.
T Consensus       140 ~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~  197 (518)
T COG0029         140 LKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGG  197 (518)
T ss_pred             HHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCCcc
Confidence            888876 6999999999999988876 44 3333  322  47889999999998763

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.90  E-value=6.6e-08  Score=91.64  Aligned_cols=78  Identities=23%  Similarity=0.421  Sum_probs=62.0

Q ss_pred             cCCccceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCe-EEEEcCCCcEEEcCEEEEcCCcChHH----HHHhcCC
Q psy7710         195 SPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQADE----MALKSGC  269 (473)
Q Consensus       195 ~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-v~v~~~~g~~i~ad~VV~aaG~~s~~----l~~~~g~  269 (473)
                      .++-|.-.-..++..+.+.++++|++|+++++|.+|..+++. ..|.+.+|.++.+|+||+|.|..+.+    +.+.+|+
T Consensus       164 ~rHiGTD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~dw~~~l~~K~Gv  243 (486)
T COG2509         164 QRHIGTDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGRDWFEMLHKKLGV  243 (486)
T ss_pred             ccccCccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcchHHHHHHHHHhcCc
Confidence            344444445778999999999999999999999999988764 45888888899999999999987654    4455566


Q ss_pred             CCC
Q psy7710         270 SLE  272 (473)
Q Consensus       270 ~~~  272 (473)
                      ...
T Consensus       244 ~~~  246 (486)
T COG2509         244 KMR  246 (486)
T ss_pred             ccc
Confidence            543

>PLN02268 probable polyamine oxidase

Probab=98.90  E-value=1.1e-08  Score=102.50  Aligned_cols=41  Identities=37%  Similarity=0.621  Sum_probs=37.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG  100 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~  100 (473)
                      .+|+|||||++||++|+.|.++  |.+|+|+|+.+++||....
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~--g~~v~vlEa~~r~GGri~t   41 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDA--SFKVTLLESRDRIGGRVHT   41 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCCCCCceeee
Confidence            3799999999999999999998  8999999999999988644

>PLN02568 polyamine oxidase

Probab=98.90  E-value=5.6e-08  Score=98.66  Aligned_cols=54  Identities=19%  Similarity=0.265  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcC
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ  259 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~  259 (473)
                      ..+.+.|.+.+.  +.+|+++++|++|..+++++.|++.+|.+++||+||+|+-..
T Consensus       242 ~~Li~~La~~L~--~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl~  295 (539)
T PLN02568        242 LSVIEALASVLP--PGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSLG  295 (539)
T ss_pred             HHHHHHHHhhCC--CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCHH
Confidence            446666666553  347999999999999888899999888789999999999654

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.89  E-value=8.2e-08  Score=103.84  Aligned_cols=35  Identities=31%  Similarity=0.451  Sum_probs=32.9

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .++||+|||+|.+|+++|+.+++.  |.+|+|+||..
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~--G~~V~lleK~~   46 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEH--GANVLLLEKAH   46 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHC--CCeEEEEeccc
Confidence            568999999999999999999999  99999999984

>KOG1399|consensus

Probab=98.89  E-value=1.4e-08  Score=99.31  Aligned_cols=63  Identities=14%  Similarity=0.115  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHcCc--EEEeCceEEEEEEcC-CeEEEEcCCC----cEEEcCEEEEcCCcCh-HHHHHh
Q psy7710         204 GLVTRVMGEEFCELGG--EIRLNQQVESFKENP-ESVTISTKQG----DHLESSYALVCAGLQA-DEMALK  266 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv--~i~~~~~V~~i~~~~-~~v~v~~~~g----~~i~ad~VV~aaG~~s-~~l~~~  266 (473)
                      ..+.+.|...++..++  .|.++++|..+...+ +.|.|.+.+.    .+.-+|.||+|+|.+. +.+...
T Consensus        90 ~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~  160 (448)
T KOG1399|consen   90 REVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQI  160 (448)
T ss_pred             HHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcC
Confidence            4678888888887765  789999999999888 7899887543    3567899999999995 444443

>PTZ00058 glutathione reductase; Provisional

Probab=98.89  E-value=2.3e-08  Score=101.66  Aligned_cols=46  Identities=50%  Similarity=0.727  Sum_probs=39.0

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceE
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVV  106 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~  106 (473)
                      .+|||+|||||++|+++|..+++.  |.+|+|||++ .+||  ++.|.|++
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~~--G~~ValIEk~-~~GG--tCln~GCi   92 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAARN--KAKVALVEKD-YLGG--TCVNVGCV   92 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHc--CCeEEEEecc-cccc--cccccCCC
Confidence            578999999999999999999999  9999999997 5554  44555654

>PRK06370 mercuric reductase; Validated

Probab=98.89  E-value=2.6e-08  Score=100.28  Aligned_cols=40  Identities=33%  Similarity=0.442  Sum_probs=36.0

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQ   98 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~   98 (473)
                      .++||+|||||++|+++|+.|++.  |++|+|+|+. .+||.+
T Consensus         4 ~~~DvvVIG~GpaG~~aA~~aa~~--G~~v~lie~~-~~GG~c   43 (463)
T PRK06370          4 QRYDAIVIGAGQAGPPLAARAAGL--GMKVALIERG-LLGGTC   43 (463)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhC--CCeEEEEecC-ccCCce
Confidence            569999999999999999999999  9999999997 566554

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=98.88  E-value=3.1e-08  Score=100.76  Aligned_cols=58  Identities=12%  Similarity=0.175  Sum_probs=44.9

Q ss_pred             HHHHcCcEEEeCceEEEEEEcCCeEE---EEcCCC---c-EEEcCEEEEcCCcC-hHHHHHhcCCC
Q psy7710         213 EFCELGGEIRLNQQVESFKENPESVT---ISTKQG---D-HLESSYALVCAGLQ-ADEMALKSGCS  270 (473)
Q Consensus       213 ~~~~~Gv~i~~~~~V~~i~~~~~~v~---v~~~~g---~-~i~ad~VV~aaG~~-s~~l~~~~g~~  270 (473)
                      .++..+.+|++++.|++|..++++++   +...++   + .+.++.||+|+|+. |+.|+..+|+.
T Consensus       212 a~~~~nl~v~t~a~v~ri~~~~~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgig  277 (542)
T COG2303         212 ALKRPNLTLLTGARVRRILLEGDRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIG  277 (542)
T ss_pred             HhcCCceEEecCCEEEEEEEECCeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCCC
Confidence            45556799999999999999887543   443333   1 25678999999998 89999998876

>PTZ00367 squalene epoxidase; Provisional

Probab=98.88  E-value=3.5e-07  Score=93.21  Aligned_cols=35  Identities=34%  Similarity=0.590  Sum_probs=32.7

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .++||+|||||++|+++|+.|+++  |.+|+|+|+..
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~--G~~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQ--GRKVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhc--CCEEEEEcccc
Confidence            468999999999999999999999  99999999973

>PRK10262 thioredoxin reductase; Provisional

Probab=98.88  E-value=3.6e-08  Score=94.40  Aligned_cols=54  Identities=15%  Similarity=0.279  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         205 LVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       205 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      .+.+.+.+.+...+.+++.+ .|..++..++.+.+.+..+ .+.+|.||+|+|.+.
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~~-~~~~d~vilAtG~~~  117 (321)
T PRK10262         64 LLMERMHEHATKFETEIIFD-HINKVDLQNRPFRLTGDSG-EYTCDALIIATGASA  117 (321)
T ss_pred             HHHHHHHHHHHHCCCEEEee-EEEEEEecCCeEEEEecCC-EEEECEEEECCCCCC
Confidence            34555666666677777665 5777887777777776555 789999999999874

>PRK14727 putative mercuric reductase; Provisional

Probab=98.87  E-value=1.1e-07  Score=95.90  Aligned_cols=57  Identities=21%  Similarity=0.304  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChH
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD  261 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~  261 (473)
                      ..+...+.+.+++.|++++++++|+++..+++.+.+.++++ ++.+|.||+|+|...+
T Consensus       228 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn  284 (479)
T PRK14727        228 PLLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHAN  284 (479)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCC
Confidence            45677888889999999999999999987777777777776 7999999999999853

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.87  E-value=3.3e-08  Score=73.33  Aligned_cols=33  Identities=33%  Similarity=0.624  Sum_probs=30.6

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKE   93 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~   93 (473)
                      .|+|||||.+|+.+|..|++.  |.+|+++++.+.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~--g~~vtli~~~~~   33 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAEL--GKEVTLIERSDR   33 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHT--TSEEEEEESSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHh--CcEEEEEeccch
Confidence            489999999999999999999  999999999853

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PLN02785 Protein HOTHEAD

Probab=98.87  E-value=4.1e-08  Score=100.58  Aligned_cols=62  Identities=16%  Similarity=0.128  Sum_probs=43.8

Q ss_pred             HHHHHHHcCcEEEeCceEEEEEEcCC----e-EEEEc--CCCcEE-------EcCEEEEcCCcC-hHHHHHhcCCCC
Q psy7710         210 MGEEFCELGGEIRLNQQVESFKENPE----S-VTIST--KQGDHL-------ESSYALVCAGLQ-ADEMALKSGCSL  271 (473)
Q Consensus       210 l~~~~~~~Gv~i~~~~~V~~i~~~~~----~-v~v~~--~~g~~i-------~ad~VV~aaG~~-s~~l~~~~g~~~  271 (473)
                      +...+...+++|++++.|++|..+++    + +.|+.  .+|...       ..+.||+|+|+. +++|+..+||..
T Consensus       226 l~~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp  302 (587)
T PLN02785        226 LLAAGNPNKLRVLLHATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGP  302 (587)
T ss_pred             HHhhcCCCCeEEEeCCEEEEEEEcCCCCCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCC
Confidence            33455567899999999999997642    2 33443  445322       236899999997 889998888764

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.86  E-value=6.4e-07  Score=87.78  Aligned_cols=58  Identities=19%  Similarity=0.137  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEE-EEcCCC--cEEEcCEEEEcCCcCh
Q psy7710         203 WGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVT-ISTKQG--DHLESSYALVCAGLQA  260 (473)
Q Consensus       203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~~~~g--~~i~ad~VV~aaG~~s  260 (473)
                      ..++.+.|.+.+++.|++++++++|.++..+++++. +.+.++  ..++||.||+|+|.+.
T Consensus       258 G~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~  318 (422)
T PRK05329        258 GLRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSFF  318 (422)
T ss_pred             hHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCcc
Confidence            356788899999999999999999999997776655 344444  3589999999999873

>KOG2415|consensus

Probab=98.86  E-value=2.8e-08  Score=92.47  Aligned_cols=171  Identities=25%  Similarity=0.396  Sum_probs=98.8

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhc----CCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLN----YPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYE  131 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~----~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (473)
                      ..+||+|||||++||++|.+|.+.    +..++|.|+||...+|+.+-  ++.++.      |..+.        +++.+
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gghtl--SGavie------p~ald--------EL~P~  138 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTL--SGAVIE------PGALD--------ELLPD  138 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCcee--cceeec------cchhh--------hhCcc
Confidence            568999999999999999998653    23689999999977775432  222232      22210        00111


Q ss_pred             HHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHH
Q psy7710         132 YFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMG  211 (473)
Q Consensus       132 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~  211 (473)
                      +.++ +.+..     ...+       .+           .+.+++.+..-. .|..   ..+-......+.-..++++|-
T Consensus       139 wke~-~apl~-----t~vT-------~d-----------~~~fLt~~~~i~-vPv~---~pm~NhGNYvv~L~~~v~wLg  190 (621)
T KOG2415|consen  139 WKED-GAPLN-----TPVT-------SD-----------KFKFLTGKGRIS-VPVP---SPMDNHGNYVVSLGQLVRWLG  190 (621)
T ss_pred             hhhc-CCccc-----cccc-------cc-----------ceeeeccCceee-cCCC---cccccCCcEEEEHHHHHHHHH
Confidence            1100 00000     0000       00           111121110000 0100   001111223456688999999


Q ss_pred             HHHHHcCcEEEeCceEEEEEEcCC-eE-EEEcCC---------------CcEEEcCEEEEcCCcC---hHHHHHhcCCC
Q psy7710         212 EEFCELGGEIRLNQQVESFKENPE-SV-TISTKQ---------------GDHLESSYALVCAGLQ---ADEMALKSGCS  270 (473)
Q Consensus       212 ~~~~~~Gv~i~~~~~V~~i~~~~~-~v-~v~~~~---------------g~~i~ad~VV~aaG~~---s~~l~~~~g~~  270 (473)
                      +++++.|++|+-+..+.++..+.+ .| .|.|+|               |-++.|+.-|.|-|+.   +.++.+..+++
T Consensus       191 ~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr  269 (621)
T KOG2415|consen  191 EKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLR  269 (621)
T ss_pred             HHHHhhCceeccccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccchhHHHHHHHhCcc
Confidence            999999999999999999986543 23 355532               2358899999999876   56888888776

>KOG1298|consensus

Probab=98.84  E-value=6.1e-08  Score=89.47  Aligned_cols=161  Identities=19%  Similarity=0.251  Sum_probs=90.0

Q ss_pred             CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhH-HHHHHHH
Q psy7710          55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGM-NLAYEYF  133 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  133 (473)
                      +..+||+|||||++|.+.|+.|++.  |.+|.||||+-.                   .|+...-++.+.+- ..+.++-
T Consensus        43 ~~~~DvIIVGAGV~GsaLa~~L~kd--GRrVhVIERDl~-------------------EPdRivGEllQPGG~~~L~~LG  101 (509)
T KOG1298|consen   43 DGAADVIIVGAGVAGSALAYALAKD--GRRVHVIERDLS-------------------EPDRIVGELLQPGGYLALSKLG  101 (509)
T ss_pred             CCcccEEEECCcchHHHHHHHHhhC--CcEEEEEecccc-------------------cchHHHHHhcCcchhHHHHHhC
Confidence            3578999999999999999999999  999999999721                   34433333322221 1111110


Q ss_pred             Hh---cCCCC-cccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHH
Q psy7710         134 DK---RNIPY-KKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRV  209 (473)
Q Consensus       134 ~~---~~~~~-~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  209 (473)
                      -+   .+++- ...|+....                          ++++..--+|.... .  ..+.+-.++..++++.
T Consensus       102 l~Dcve~IDAQ~v~Gy~ifk--------------------------~gk~v~~pyP~~~f-~--~d~~GrsFhnGRFvq~  152 (509)
T KOG1298|consen  102 LEDCVEGIDAQRVTGYAIFK--------------------------DGKEVDLPYPLKNF-P--SDPSGRSFHNGRFVQR  152 (509)
T ss_pred             HHHHhhcccceEeeeeEEEe--------------------------CCceeeccCCCcCC-C--CCcccceeeccHHHHH
Confidence            00   01111 111221111                          11111111221110 0  0111223455789999


Q ss_pred             HHHHHHH-cCcEEEeCceEEEEEEcCCeE---EEEcCCCcE--EEcCEEEEcCCcChHHHHHhc
Q psy7710         210 MGEEFCE-LGGEIRLNQQVESFKENPESV---TISTKQGDH--LESSYALVCAGLQADEMALKS  267 (473)
Q Consensus       210 l~~~~~~-~Gv~i~~~~~V~~i~~~~~~v---~v~~~~g~~--i~ad~VV~aaG~~s~~l~~~~  267 (473)
                      |++.+.. .++++. +-.|.++.++++.+   +.+++.|++  ..|..-|+|.|.+| .+.+.+
T Consensus       153 lR~ka~slpNV~~e-eGtV~sLlee~gvvkGV~yk~k~gee~~~~ApLTvVCDGcfS-nlRrsL  214 (509)
T KOG1298|consen  153 LRKKAASLPNVRLE-EGTVKSLLEEEGVVKGVTYKNKEGEEVEAFAPLTVVCDGCFS-NLRRSL  214 (509)
T ss_pred             HHHHHhcCCCeEEe-eeeHHHHHhccCeEEeEEEecCCCceEEEecceEEEecchhH-HHHHHh
Confidence            9988765 478875 45577777776543   345555544  45678999999998 465544

>KOG2614|consensus

Probab=98.83  E-value=5.4e-07  Score=84.76  Aligned_cols=36  Identities=39%  Similarity=0.613  Sum_probs=32.5

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL   94 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~   94 (473)
                      +.+|+|||||++|+++|..|.++  |.+|+|+|+...+
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~--G~~v~VlE~~e~~   37 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRK--GIDVVVLESREDP   37 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHc--CCeEEEEeecccc
Confidence            35799999999999999999999  9999999997544

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.83  E-value=1.9e-07  Score=94.00  Aligned_cols=46  Identities=35%  Similarity=0.463  Sum_probs=37.6

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceE
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVV  106 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~  106 (473)
                      +|||+|||||++|+++|..++++  |++|+|||+...+||.  +.|.|++
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~--G~~V~liE~~~~~GG~--c~~~gci   48 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQL--GLKVACVEGRSTLGGT--CLNVGCM   48 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCceeee--eccCccc
Confidence            58999999999999999999999  9999999975456644  3444443

>PRK13748 putative mercuric reductase; Provisional

Probab=98.83  E-value=1.5e-07  Score=97.31  Aligned_cols=66  Identities=17%  Similarity=0.211  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChH-HH--HHhcCCC
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD-EM--ALKSGCS  270 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~-~l--~~~~g~~  270 (473)
                      ..+...+.+.+++.|+++++++.|+++..+++.+.+.++++ ++.+|.||+|+|...+ .+  ++.+|+.
T Consensus       310 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~  378 (561)
T PRK13748        310 PAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVT  378 (561)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCce
Confidence            45777888889999999999999999987777777777776 7999999999998743 22  3445554

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.83  E-value=2.8e-08  Score=98.57  Aligned_cols=39  Identities=31%  Similarity=0.532  Sum_probs=35.0

Q ss_pred             CCcccEEEEcCChHHHHHHHHHHhcCCCCe-EEEEeccCccc
Q psy7710          55 PALYDVVVVGGGIVGVATARELKLNYPKMK-ICLVEKEKELG   95 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~-V~viE~~~~~g   95 (473)
                      ..++||+|||||.+|+++|++|.++  |.. ++|+||+..+|
T Consensus         6 ~~~~~v~IIGaG~sGlaaa~~L~~~--g~~~~~i~Ek~~~~G   45 (443)
T COG2072           6 ATHTDVAIIGAGQSGLAAAYALKQA--GVPDFVIFEKRDDVG   45 (443)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHc--CCCcEEEEEccCCcC
Confidence            3678999999999999999999999  677 99999997665

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=98.82  E-value=8.5e-08  Score=93.40  Aligned_cols=53  Identities=17%  Similarity=0.229  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcC
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ  259 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~  259 (473)
                      ..+.+++.+.+...   |+++++|++|..+..++.+.+.+|.++.||.||+++-.+
T Consensus       215 ~~l~~al~~~l~~~---i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~  267 (444)
T COG1232         215 QSLIEALAEKLEAK---IRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLP  267 (444)
T ss_pred             HHHHHHHHHHhhhc---eeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHH
Confidence            56777777776654   899999999999877777777788789999999999766

>PLN02507 glutathione reductase

Probab=98.82  E-value=9.2e-08  Score=96.76  Aligned_cols=33  Identities=30%  Similarity=0.325  Sum_probs=31.5

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEec
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEK   90 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~   90 (473)
                      .+|||+|||||++|+.+|..+++.  |++|+|||+
T Consensus        24 ~~yDvvVIG~GpaG~~aA~~a~~~--G~~V~liE~   56 (499)
T PLN02507         24 YDFDLFVIGAGSGGVRAARFSANF--GAKVGICEL   56 (499)
T ss_pred             cccCEEEECCCHHHHHHHHHHHHC--CCeEEEEec
Confidence            468999999999999999999999  999999996

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.81  E-value=9.1e-09  Score=98.61  Aligned_cols=60  Identities=17%  Similarity=0.288  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCc-EEEcCEEEEcCCcChHHHHHhc
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGD-HLESSYALVCAGLQADEMALKS  267 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~-~i~ad~VV~aaG~~s~~l~~~~  267 (473)
                      .++.....+.++++||+|++++.|++++.++    |++.+|. ++.++.||.|+|..++.+.+.+
T Consensus       209 ~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~----v~~~~g~~~I~~~tvvWaaGv~a~~~~~~l  269 (405)
T COG1252         209 PKLSKYAERALEKLGVEVLLGTPVTEVTPDG----VTLKDGEEEIPADTVVWAAGVRASPLLKDL  269 (405)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCceEEECCCc----EEEccCCeeEecCEEEEcCCCcCChhhhhc
Confidence            4455667788899999999999999998764    5555554 5999999999999988888864

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.81  E-value=4.5e-08  Score=97.54  Aligned_cols=64  Identities=13%  Similarity=0.182  Sum_probs=48.8

Q ss_pred             CccceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCC-eE-EEEcCCCcEEEcCEEEEcCCcChH
Q psy7710         197 NTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPE-SV-TISTKQGDHLESSYALVCAGLQAD  261 (473)
Q Consensus       197 ~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~v-~v~~~~g~~i~ad~VV~aaG~~s~  261 (473)
                      ...++|-..+-+.|.+.++++|++++.++ |+++..+++ .+ .|++.+|.+++||.||-|+|..+.
T Consensus       147 ~ayhlDR~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~  212 (454)
T PF04820_consen  147 YAYHLDRAKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL  212 (454)
T ss_dssp             -EEEEEHHHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred             eeEEEeHHHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence            44578889999999999999999998875 777766544 33 588888989999999999998763

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PLN02612 phytoene desaturase

Probab=98.81  E-value=8.5e-08  Score=98.43  Aligned_cols=56  Identities=20%  Similarity=0.344  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCe--EEEEcCCCcEEEcCEEEEcCCcC
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPES--VTISTKQGDHLESSYALVCAGLQ  259 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~--v~v~~~~g~~i~ad~VV~aaG~~  259 (473)
                      ..+++.|.+.++++|++|+++++|++|..++++  +.|++.+|+.++||.||+|+...
T Consensus       308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~  365 (567)
T PLN02612        308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVD  365 (567)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHH
Confidence            568889999998999999999999999985443  34777778789999999999764

>TIGR02731 phytoene_desat phytoene desaturase

Probab=98.80  E-value=1.2e-07  Score=95.33  Aligned_cols=57  Identities=18%  Similarity=0.246  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHcCcEEEeCceEEEEEEcC-CeE-EEEcCCCc-----EEEcCEEEEcCCcC
Q psy7710         203 WGLVTRVMGEEFCELGGEIRLNQQVESFKENP-ESV-TISTKQGD-----HLESSYALVCAGLQ  259 (473)
Q Consensus       203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~v-~v~~~~g~-----~i~ad~VV~aaG~~  259 (473)
                      +..+.+.+.+.+++.|++|+++++|++|..++ +.+ .|++.+++     ++.||.||+|+...
T Consensus       212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~  275 (453)
T TIGR02731       212 PERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVD  275 (453)
T ss_pred             hHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHH
Confidence            46788899999989999999999999998643 323 46664443     68999999999775

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.79  E-value=1.6e-07  Score=79.47  Aligned_cols=42  Identities=14%  Similarity=0.367  Sum_probs=34.6

Q ss_pred             cCcEEE-eCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCc
Q psy7710         217 LGGEIR-LNQQVESFKENPESVTISTKQGDHLESSYALVCAGL  258 (473)
Q Consensus       217 ~Gv~i~-~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~  258 (473)
                      .|++|. ...+|++|...++++.|.+.+|..+.+|.||+|+|.
T Consensus       113 ~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  113 AGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             CCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence            354443 356899999998888888888889999999999995

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.79  E-value=4e-08  Score=99.33  Aligned_cols=60  Identities=22%  Similarity=0.268  Sum_probs=45.5

Q ss_pred             eeHHHHHHHHHHHHHHcCc--EEEeCceEEEEEEcC-----CeEEEEcCC-C--cEEEcCEEEEcCCcCh
Q psy7710         201 VDWGLVTRVMGEEFCELGG--EIRLNQQVESFKENP-----ESVTISTKQ-G--DHLESSYALVCAGLQA  260 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~~Gv--~i~~~~~V~~i~~~~-----~~v~v~~~~-g--~~i~ad~VV~aaG~~s  260 (473)
                      .....+.+.|..+++..++  .|++|++|+++...+     +.|.|++.+ |  .+-.+|.||+|+|.++
T Consensus        81 ~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~  150 (531)
T PF00743_consen   81 PSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFS  150 (531)
T ss_dssp             EBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSS
T ss_pred             CCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcC
Confidence            3456788888888887776  689999999998754     468888754 3  2345799999999985

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR02053 MerA mercuric reductase

Probab=98.79  E-value=2.5e-07  Score=93.30  Aligned_cols=57  Identities=19%  Similarity=0.232  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcC---CCcEEEcCEEEEcCCcCh
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTK---QGDHLESSYALVCAGLQA  260 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~---~g~~i~ad~VV~aaG~~s  260 (473)
                      ..+...+.+.+++.|++++++++|+++..+++.+.+++.   ++.++++|.||+|+|...
T Consensus       207 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p  266 (463)
T TIGR02053       207 PEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRP  266 (463)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCc
Confidence            346677888888999999999999999877665555432   235799999999999764

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=98.78  E-value=1.8e-07  Score=84.77  Aligned_cols=62  Identities=18%  Similarity=0.209  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEE-EEcCCC--cEEEcCEEEEcCCcC-hHHHHH
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVT-ISTKQG--DHLESSYALVCAGLQ-ADEMAL  265 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~~~~g--~~i~ad~VV~aaG~~-s~~l~~  265 (473)
                      -++.+.|...+++.|+.++.+.+|.+.+..+++|+ |.|.+.  ..++||..|+|+|.+ |..|..
T Consensus       258 iRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLva  323 (421)
T COG3075         258 IRLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVA  323 (421)
T ss_pred             hhHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeeccccccccchh
Confidence            45567777888899999999999999998888775 777665  457899999999998 665543

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.78  E-value=2.1e-07  Score=93.93  Aligned_cols=33  Identities=30%  Similarity=0.431  Sum_probs=31.6

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEec
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEK   90 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~   90 (473)
                      .++|++|||||++|+++|..+++.  |.+|+|||+
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~~--g~~v~lie~   35 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQL--GLKVACIEA   35 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHhC--CCeEEEEec
Confidence            469999999999999999999999  999999998

>KOG2404|consensus

Probab=98.77  E-value=8.8e-08  Score=86.32  Aligned_cols=48  Identities=29%  Similarity=0.497  Sum_probs=40.2

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEe
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHA  108 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~  108 (473)
                      .|+|||+|++||+++..+...  +-.|+++|+...+|+.+-..++|+-.+
T Consensus        11 pvvVIGgGLAGLsasn~iin~--gg~V~llek~~s~GGNSiKAsSGINgA   58 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINK--GGIVILLEKAGSIGGNSIKASSGINGA   58 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhc--CCeEEEEeccCCcCCcceecccCcCCC
Confidence            499999999999999999998  667999999988887766666665443

>PLN02546 glutathione reductase

Probab=98.77  E-value=2.9e-07  Score=93.83  Aligned_cols=33  Identities=21%  Similarity=0.236  Sum_probs=31.3

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEec
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEK   90 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~   90 (473)
                      .+|||+|||+|++|+.+|..+++.  |++|+|+|+
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~~--G~~V~liE~  110 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASNF--GASAAVCEL  110 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC--CCeEEEEec
Confidence            468999999999999999999999  999999996

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.75  E-value=5.3e-07  Score=91.34  Aligned_cols=57  Identities=11%  Similarity=0.021  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      ..+.+.+.+.+++.|+++++++.+.++...++.+.+.+.+|.++.+|.||+|+|...
T Consensus       222 ~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~p  278 (499)
T PTZ00052        222 RQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKP  278 (499)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCC
Confidence            456678888899999999999999999876666667666777899999999999874

>PLN02529 lysine-specific histone demethylase 1

Probab=98.75  E-value=3e-07  Score=95.52  Aligned_cols=43  Identities=28%  Similarity=0.406  Sum_probs=38.8

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG  100 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~  100 (473)
                      ...||+|||||++|+++|..|+++  |.+|+|+|+.+++||....
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~--g~~v~v~E~~~~~GG~~~t  201 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSF--GFKVVVLEGRNRPGGRVYT  201 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHc--CCcEEEEecCccCcCceee
Confidence            467999999999999999999999  9999999999889887543

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.74  E-value=5.7e-07  Score=90.53  Aligned_cols=44  Identities=23%  Similarity=0.333  Sum_probs=35.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceE
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVV  106 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~  106 (473)
                      .||+|||+|.+|+.+|..++++  |.+|+|+|++ .+||.  +.+.|++
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~--g~~v~~~e~~-~~gG~--c~~~gci   45 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQL--GADVTVIERD-GLGGA--AVLTDCV   45 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC--CCeEEEEEcc-CCCCc--ccccCCc
Confidence            4799999999999999999999  9999999997 55433  3344443

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.73  E-value=1.8e-07  Score=94.23  Aligned_cols=39  Identities=36%  Similarity=0.378  Sum_probs=35.3

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQ   98 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~   98 (473)
                      ++||+|||||++|+++|..|++.  |.+|+|||++ .+||.+
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~--G~~V~lie~~-~~GG~c   42 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQL--GLKTAVVEKK-YWGGVC   42 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC--CCeEEEEecC-CCCCce
Confidence            58999999999999999999999  9999999997 666554

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.72  E-value=8e-08  Score=102.36  Aligned_cols=64  Identities=23%  Similarity=0.401  Sum_probs=52.0

Q ss_pred             HHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcC-hHHHHHhcCCCC
Q psy7710         208 RVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ-ADEMALKSGCSL  271 (473)
Q Consensus       208 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~-s~~l~~~~g~~~  271 (473)
                      ..+.+.++++|+++++++.|+++..++....|++.+|.++.+|.||+|+|.. ...|++.+|++.
T Consensus       186 ~~l~~~l~~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~~~gl~~  250 (785)
T TIGR02374       186 RLLQRELEQKGLTFLLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAVSAGIKV  250 (785)
T ss_pred             HHHHHHHHHcCCEEEeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcHHHHhcCCcc
Confidence            3466777889999999999999987655556777888899999999999987 456777777764

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=98.71  E-value=2.6e-07  Score=92.91  Aligned_cols=61  Identities=11%  Similarity=0.185  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHcCcEEEeCceEEEEEEcC--C----eEEEEcCCC---cEEEcCEEEEcCCcC-hHHHHH
Q psy7710         205 LVTRVMGEEFCELGGEIRLNQQVESFKENP--E----SVTISTKQG---DHLESSYALVCAGLQ-ADEMAL  265 (473)
Q Consensus       205 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~----~v~v~~~~g---~~i~ad~VV~aaG~~-s~~l~~  265 (473)
                      .+.+.+.+.++++|++|+++++|++|..++  +    .+.|++.+|   ..+.||+||+|+..+ ...|+.
T Consensus       220 ~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~  290 (474)
T TIGR02732       220 YLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLP  290 (474)
T ss_pred             hHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCC
Confidence            356778899999999999999999998753  2    223444333   458999999999988 444443

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN02576 protoporphyrinogen oxidase

Probab=98.69  E-value=3e-07  Score=93.68  Aligned_cols=45  Identities=29%  Similarity=0.402  Sum_probs=39.3

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGH  101 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~  101 (473)
                      .++||+|||||++||++|++|+++. |.+|+|+|+.+++||...+.
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~-g~~v~vlEa~~rvGGr~~t~   55 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKH-GVNVLVTEARDRVGGNITSV   55 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhc-CCCEEEEecCCCCCCceeEe
Confidence            4578999999999999999999873 58999999999999886543

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.68  E-value=1.3e-07  Score=94.82  Aligned_cols=65  Identities=29%  Similarity=0.422  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcC-hHHHHHhcCCCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ-ADEMALKSGCSL  271 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~-s~~l~~~~g~~~  271 (473)
                      +.+.+.+.+++.|++++++++|+++..+++...+.++++ ++.+|.||+|+|.. ...+++.+|++.
T Consensus       193 ~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~d~vi~a~G~~p~~~~l~~~gl~~  258 (444)
T PRK09564        193 ITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDKG-EYEADVVIVATGVKPNTEFLEDTGLKT  258 (444)
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEeCCC-EEEcCEEEECcCCCcCHHHHHhcCccc
Confidence            444567778889999999999999976555455666665 89999999999987 446788777653

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.68  E-value=9.8e-08  Score=101.71  Aligned_cols=66  Identities=14%  Similarity=0.314  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHcCcEEEeCceEEEEEEcC--CeEEEEcCCCcEEEcCEEEEcCCcC-hHHHHHhcCCCCC
Q psy7710         207 TRVMGEEFCELGGEIRLNQQVESFKENP--ESVTISTKQGDHLESSYALVCAGLQ-ADEMALKSGCSLE  272 (473)
Q Consensus       207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~~v~v~~~~g~~i~ad~VV~aaG~~-s~~l~~~~g~~~~  272 (473)
                      ...+.+.++++|+++++++.|++|..++  ....+.+.+|.++.+|.||+|+|.. ...|++.+|+..+
T Consensus       190 ~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~  258 (847)
T PRK14989        190 GEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQCGLAVA  258 (847)
T ss_pred             HHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHhhcCccCC
Confidence            3447777888999999999999997643  3445777788899999999999988 4568888887643

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.65  E-value=3.7e-08  Score=70.06  Aligned_cols=37  Identities=30%  Similarity=0.502  Sum_probs=32.8

Q ss_pred             EEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC
Q psy7710          62 VVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG  100 (473)
Q Consensus        62 IIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~  100 (473)
                      |||||++|+++|+.|+++  |.+|+|+|+.+.+|+.+..
T Consensus         1 IiGaG~sGl~aA~~L~~~--g~~v~v~E~~~~~GG~~~~   37 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKA--GYRVTVFEKNDRLGGRARS   37 (68)
T ss_dssp             EES-SHHHHHHHHHHHHT--TSEEEEEESSSSSSGGGCE
T ss_pred             CEeeCHHHHHHHHHHHHC--CCcEEEEecCcccCcceeE
Confidence            899999999999999999  8999999999888876544

...

>KOG1335|consensus

Probab=98.64  E-value=7.2e-07  Score=82.51  Aligned_cols=56  Identities=25%  Similarity=0.404  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCC-eEEEEcC---CC--cEEEcCEEEEcCCcC
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPE-SVTISTK---QG--DHLESSYALVCAGLQ  259 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~v~v~~~---~g--~~i~ad~VV~aaG~~  259 (473)
                      ..+...+++.++++|+++.++++|.....+++ .+.|...   ++  .+++||.+++|+|-.
T Consensus       252 ~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRr  313 (506)
T KOG1335|consen  252 GEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRR  313 (506)
T ss_pred             HHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCc
Confidence            56788888889999999999999999998876 4544322   22  578999999999965

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=98.64  E-value=1.6e-07  Score=85.66  Aligned_cols=43  Identities=28%  Similarity=0.455  Sum_probs=38.3

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGH  101 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~  101 (473)
                      ...+|+|||+|++||++|+.|+++   .+|+++|.++++||.+...
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~r---hdVTLfEA~~rlGGha~Tv   49 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSRR---HDVTLFEADRRLGGHANTV   49 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhcc---cceEEEeccccccCcccee
Confidence            467899999999999999999987   7999999999999876543

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.64  E-value=1.3e-06  Score=87.85  Aligned_cols=49  Identities=27%  Similarity=0.452  Sum_probs=38.1

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc--------CcccCcccCCCcceEE
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE--------KELGMHQTGHNSGVVH  107 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~--------~~~g~~~s~~~~g~~~  107 (473)
                      .+|||+|||+|++|..+|..+++.+ |.+|+|||++        ..+  |.++.|.||+.
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~-g~~V~lie~~~~~~~~~~~~~--GGtCln~GCiP   58 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLY-KKRVAVIDVQTHHGPPHYAAL--GGTCVNVGCVP   58 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhc-CCEEEEEecccCccccccCCc--cCeecCcCCcc
Confidence            5699999999999999999999952 7999999973        234  34455666653

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.64  E-value=2.3e-07  Score=93.12  Aligned_cols=50  Identities=16%  Similarity=0.355  Sum_probs=39.0

Q ss_pred             HHHHHHcCcEEEeCceEEEEEEcCCeEEEEcC-CCcEEE--cCEEEEcCCcCh
Q psy7710         211 GEEFCELGGEIRLNQQVESFKENPESVTISTK-QGDHLE--SSYALVCAGLQA  260 (473)
Q Consensus       211 ~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~-~g~~i~--ad~VV~aaG~~s  260 (473)
                      .+.+++.|++++.++.|++|+.+++.+.+... ++..++  +|++|+|+|...
T Consensus        63 ~~~~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~  115 (444)
T PRK09564         63 PEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARP  115 (444)
T ss_pred             HHHHHHCCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCC
Confidence            34456679999999999999988887777642 344666  999999999864

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.64  E-value=5.5e-07  Score=90.78  Aligned_cols=33  Identities=36%  Similarity=0.552  Sum_probs=31.3

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      +||++|||+|++|+.+|+.+++.  |.+|++||+.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~--G~~v~lie~~   34 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADY--GAKVMLLDFV   34 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC--CCeEEEEecc
Confidence            48999999999999999999999  9999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.62  E-value=1.4e-07  Score=101.66  Aligned_cols=38  Identities=26%  Similarity=0.387  Sum_probs=34.2

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      ...+|+|||||++||++|++|+++  |++|+|+|+.+.+|
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~--G~~VtVfE~~~~~G  342 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVE--GFPVTVFEAFHDLG  342 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC--CCeEEEEeeCCCCC
Confidence            457899999999999999999999  99999999986554

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.62  E-value=3e-07  Score=91.82  Aligned_cols=61  Identities=15%  Similarity=0.208  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh-HHHHHhcCCCC
Q psy7710         207 TRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA-DEMALKSGCSL  271 (473)
Q Consensus       207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s-~~l~~~~g~~~  271 (473)
                      ...+.+.++++|++++++++|+++..  .  .+++.+|..+++|.||+|+|... ..+++..|+..
T Consensus       192 ~~~l~~~l~~~gI~i~~~~~v~~i~~--~--~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~  253 (438)
T PRK13512        192 NQPILDELDKREIPYRLNEEIDAING--N--EVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKL  253 (438)
T ss_pred             HHHHHHHHHhcCCEEEECCeEEEEeC--C--EEEECCCCEEEeCEEEECcCCCcChHHHHhcCccc
Confidence            34466778889999999999999863  2  34555666899999999999873 46777777654

>KOG1238|consensus

Probab=98.62  E-value=1.9e-06  Score=85.90  Aligned_cols=245  Identities=16%  Similarity=0.169  Sum_probs=126.3

Q ss_pred             CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccccccccCCCCC------CcccEEEEcCChHHHHHHHHHHhcC
Q psy7710           7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSSQSP------ALYDVVVVGGGIVGVATARELKLNY   80 (473)
Q Consensus         7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~dVvIIGaGi~Gl~~A~~L~~~~   80 (473)
                      ...|||+|||+|+|||+.|.+|+ ..|+.++.+.|+..++...+.....      ..+|.-= =.=+.. .+...+    
T Consensus        55 ~~~yDyIVVGgGtAGcvlAarLS-En~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y-~t~Ps~-~ac~~m----  127 (623)
T KOG1238|consen   55 DSSYDYIVVGGGTAGCVLAARLS-ENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSY-HTEPSQ-HACLAM----  127 (623)
T ss_pred             ccCCCEEEECCCchhHHHHHhhc-cCCCceEEEEecCCCCcccccchHHHHHhccccccccC-cCccCh-hhhhhh----
Confidence            56799999999999999999999 5688999999988766322221100      0000000 000000 000011    


Q ss_pred             CCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHH----HHHHhHHHHHHHHHhcCC------CCc-ccCeEEEE
Q psy7710          81 PKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAK----LCVEGMNLAYEYFDKRNI------PYK-KCGKLIVA  149 (473)
Q Consensus        81 ~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~------~~~-~~g~l~~~  149 (473)
                       .-+....-|+ ++-||+|.-|+++...+-..+.+.+...    |.+.....+.+..+....      +|+ ..|.+.+.
T Consensus       128 -~~~~c~wpRG-rVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~~~ve  205 (623)
T KOG1238|consen  128 -SEDRCYWPRG-RVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGPLLVE  205 (623)
T ss_pred             -cCCceecCcc-ceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCcceec
Confidence             1234555666 6778899999999888866555554332    233333444444433221      232 22333333


Q ss_pred             eCc-ChhhHHHHHHHHHhCCCCcceeeCHHH-H-HhhcCCcccceeEecCCccceeHHHHHHHHHHHHH--HcCcEEEeC
Q psy7710         150 LNE-QLEPLHDLYERSIQNNVKDVRLVSAEE-I-KTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC--ELGGEIRLN  224 (473)
Q Consensus       150 ~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~-~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~Gv~i~~~  224 (473)
                      ... .............+.|. ...-+.... . ....+..       .+..-.+.   ..+++.+.+.  +.+..+..+
T Consensus       206 ~~~~~~~~~~~~~~ag~e~G~-~~~D~nG~~~tg~~~l~~t-------~~~g~R~s---~~~a~l~~~~~~R~NL~~~~~  274 (623)
T KOG1238|consen  206 AGVYPNNLFTAFHRAGTEIGG-SIFDRNGERHTGASLLQYT-------IRNGIRVS---LAKAYLKPIRLTRPNLHISRN  274 (623)
T ss_pred             cccccCchhhHhHHhHHhcCC-CccCCCCccccchhhhhcc-------ccCCEEEE---ehhhhhhhhhccCcccccccc
Confidence            333 33444445555566664 211111110 0 0000000       00000110   1122223222  347788889


Q ss_pred             ceEEEEEEcC--CeE-EEE-cCC-CcEE--Ec-CEEEEcCCcC-hHHHHHhcCCCC
Q psy7710         225 QQVESFKENP--ESV-TIS-TKQ-GDHL--ES-SYALVCAGLQ-ADEMALKSGCSL  271 (473)
Q Consensus       225 ~~V~~i~~~~--~~v-~v~-~~~-g~~i--~a-d~VV~aaG~~-s~~l~~~~g~~~  271 (473)
                      +.|+.|..+.  ... .|. ..+ |+..  .| +-||+++|+. |++|+-.+||..
T Consensus       275 ~~vtrvl~D~~~~~a~gv~~~~~~~~~~~v~a~kEVILSAGAi~SPQLLMLSGIGP  330 (623)
T KOG1238|consen  275 AAVTRVLIDPAGKRAKGVEFVRDGGKEHTVKARKEVILSAGAINSPQLLMLSGIGP  330 (623)
T ss_pred             ceEEEEEEcCCCceEEEEEEEecCceeeeecccceEEEeccccCCHHHHHHcCCCc
Confidence            9999998873  222 222 233 4343  44 3499999998 899998888764

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.62  E-value=1.3e-06  Score=90.31  Aligned_cols=47  Identities=28%  Similarity=0.439  Sum_probs=37.7

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC-cccCcccCCCcceE
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK-ELGMHQTGHNSGVV  106 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~-~~g~~~s~~~~g~~  106 (473)
                      .+|||+|||+|++|..+|..+++.  |++|+|||++. .+|  .++.|.||+
T Consensus       115 ~~yDviVIG~G~gG~~aA~~aa~~--G~kV~lie~~~~~lG--GtCvn~GCi  162 (659)
T PTZ00153        115 EEYDVGIIGCGVGGHAAAINAMER--GLKVIIFTGDDDSIG--GTCVNVGCI  162 (659)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHC--CCcEEEEeCCCCccc--cceeEeCCc
Confidence            368999999999999999999999  99999999742 344  344555554

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.60  E-value=5.1e-07  Score=80.13  Aligned_cols=52  Identities=29%  Similarity=0.465  Sum_probs=39.9

Q ss_pred             HHHHHHHHcCcEEEeCceEEEEEEcCCeE-----EE---EcCCCcEEEcCEEEEcCCcCh
Q psy7710         209 VMGEEFCELGGEIRLNQQVESFKENPESV-----TI---STKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       209 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v-----~v---~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      .+.+.+...+++++.+++|.++....+.+     .+   .+.++.++.+|+||+|+|...
T Consensus        63 ~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~  122 (201)
T PF07992_consen   63 KLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRP  122 (201)
T ss_dssp             HHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEE
T ss_pred             ccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCcccc
Confidence            35556667899999999999999887742     22   445556899999999999664

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=98.59  E-value=8.5e-07  Score=92.75  Aligned_cols=43  Identities=30%  Similarity=0.432  Sum_probs=38.6

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG  100 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~  100 (473)
                      ...+|+|||||++|+++|+.|++.  |.+|+|+|+.+++||....
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~--g~~v~v~E~~~r~GGr~~t  279 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSM--GFKVVVLEGRARPGGRVKT  279 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC--CCcEEEEeccccCCCcccc
Confidence            467899999999999999999999  9999999999889877543

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=98.59  E-value=7.8e-07  Score=80.78  Aligned_cols=48  Identities=29%  Similarity=0.453  Sum_probs=37.5

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC--cccCcccCCCcce
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK--ELGMHQTGHNSGV  105 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~--~~g~~~s~~~~g~  105 (473)
                      ..+||+|||+|++||.+|.+|+.+  |.+|+|+|+..  .+|+.+-..-+|+
T Consensus         4 ~~~dvivvgaglaglvaa~elA~a--G~~V~ildQEgeqnlGGQAfWSfGGL   53 (552)
T COG3573           4 LTADVIVVGAGLAGLVAAAELADA--GKRVLILDQEGEQNLGGQAFWSFGGL   53 (552)
T ss_pred             ccccEEEECccHHHHHHHHHHHhc--CceEEEEcccccccccceeeeecccE
Confidence            468999999999999999999999  99999999864  2344443333333

>TIGR02462 pyranose_ox pyranose oxidase

Probab=98.59  E-value=1.9e-06  Score=86.87  Aligned_cols=36  Identities=31%  Similarity=0.434  Sum_probs=33.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      +||+|||+|++|+++|+.|+++  |++|+|||++...+
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~--g~~v~~~e~~~~~~   36 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDA--GLKVAMVEIGAADS   36 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHC--CCeEEEEeccCccC
Confidence            6999999999999999999999  99999999986655

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PLN02487 zeta-carotene desaturase

Probab=98.54  E-value=1.5e-06  Score=88.44  Aligned_cols=60  Identities=5%  Similarity=0.148  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHcCcEEEeCceEEEEEEcC--C----eEEEEc---CCCcEEEcCEEEEcCCcC-hHHHH
Q psy7710         205 LVTRVMGEEFCELGGEIRLNQQVESFKENP--E----SVTIST---KQGDHLESSYALVCAGLQ-ADEMA  264 (473)
Q Consensus       205 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~----~v~v~~---~~g~~i~ad~VV~aaG~~-s~~l~  264 (473)
                      .+.+.+.+.++++|++|+++++|++|..++  +    .+.|++   .+++.+.+|.||+|++.+ ...|+
T Consensus       296 ~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Ll  365 (569)
T PLN02487        296 RLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLL  365 (569)
T ss_pred             HHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhC
Confidence            488899999999999999999999998763  2    234555   334468899999999988 33443

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.54  E-value=1.4e-06  Score=87.23  Aligned_cols=53  Identities=11%  Similarity=0.278  Sum_probs=43.9

Q ss_pred             HHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         208 RVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       208 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      ..+.+.+++.|+++++++.|+++..+++++.+.+.+|.++.+|.||+|+|...
T Consensus       211 ~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~p  263 (446)
T TIGR01424       211 ALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSP  263 (446)
T ss_pred             HHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCc
Confidence            34566777889999999999999876666777776777899999999999874

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.54  E-value=4.5e-06  Score=83.97  Aligned_cols=43  Identities=33%  Similarity=0.533  Sum_probs=35.9

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceE
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVV  106 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~  106 (473)
                      +|+|||||++|+++|..|++.  |++|+|||++ .+||  ++.|.|++
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~--g~~V~lie~~-~~GG--~c~n~gci   44 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQN--GKNVTLIDEA-DLGG--TCLNEGCM   44 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhC--CCcEEEEECC-cccc--cCCCCccc
Confidence            699999999999999999999  9999999997 4543  34455554

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.54  E-value=2.7e-06  Score=85.84  Aligned_cols=39  Identities=38%  Similarity=0.559  Sum_probs=34.7

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMH   97 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~   97 (473)
                      .+|||+|||||++|+++|..|++.  |.+|+|||++ .+|+.
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~--g~~v~lie~~-~~GG~   40 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKL--GKKVALIEKG-PLGGT   40 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHC--CCeEEEEeCC-ccccc
Confidence            458999999999999999999999  9999999995 66544

>KOG0685|consensus

Probab=98.53  E-value=5.4e-07  Score=86.05  Aligned_cols=54  Identities=26%  Similarity=0.438  Sum_probs=42.3

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC--CCcceEEeec
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG--HNSGVVHAGI  110 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~--~~~g~~~~~~  110 (473)
                      ...+|+|||||++|++||.+|.+++ ..+|+|+|..+++||+-..  ...+.+.-|.
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~g-f~~~~IlEa~dRIGGRI~ti~~~d~~ielGA   75 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLENG-FIDVLILEASDRIGGRIHTIPFADGVIELGA   75 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHhC-CceEEEEEeccccCceEeeEEcCCCeEeecc
Confidence            4568999999999999999999774 5799999999999987433  3444554443

>KOG2960|consensus

Probab=98.50  E-value=2e-07  Score=78.96  Aligned_cols=42  Identities=31%  Similarity=0.488  Sum_probs=37.2

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQ   98 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~   98 (473)
                      ..||+|||+|-+||++||..+++.|.++|.|||..-.+|+|+
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGa  117 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGA  117 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcc
Confidence            569999999999999999999988999999999985566554

>TIGR03452 mycothione_red mycothione reductase

Probab=98.50  E-value=1.7e-06  Score=86.74  Aligned_cols=43  Identities=28%  Similarity=0.489  Sum_probs=33.4

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceE
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVV  106 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~  106 (473)
                      +||++|||+|++|..+|..  +.  |++|++||++ .+||  ++.|.||+
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~~--g~~V~lie~~-~~GG--tC~n~GCi   44 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--FA--DKRIAIVEKG-TFGG--TCLNVGCI   44 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--HC--CCeEEEEeCC-CCCC--eeeccCcc
Confidence            5899999999999998644  46  8999999997 5653  44555554

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK07846 mycothione reductase; Reviewed

Probab=98.50  E-value=1.7e-06  Score=86.67  Aligned_cols=44  Identities=27%  Similarity=0.468  Sum_probs=34.2

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEE
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVH  107 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~  107 (473)
                      +||++|||+|++|.++|..  +.  |++|+|||++ .+||  ++.|.||+.
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~--G~~V~lie~~-~~GG--tC~n~GCiP   44 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FA--DKRIAIVEKG-TFGG--TCLNVGCIP   44 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HC--CCeEEEEeCC-CCCC--cccCcCcch
Confidence            3899999999999998866  45  8999999997 5654  345556543

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.48  E-value=8.1e-07  Score=86.25  Aligned_cols=151  Identities=21%  Similarity=0.279  Sum_probs=88.4

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCC-CcceEEeeccCCCchhHHHHHHHhHHHHHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGH-NSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFD  134 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (473)
                      ..|||+|||||.+|+.+|+..++.  |.+++++--+..--+..|++ +-|.+..+                         
T Consensus         3 ~~~DVIVIGgGHAG~EAA~AaARm--G~ktlLlT~~~dtig~msCNPaIGG~~KG-------------------------   55 (621)
T COG0445           3 KEYDVIVIGGGHAGVEAALAAARM--GAKTLLLTLNLDTIGEMSCNPAIGGPGKG-------------------------   55 (621)
T ss_pred             CCCceEEECCCccchHHHHhhhcc--CCeEEEEEcCCCceeecccccccCCcccc-------------------------
Confidence            459999999999999999999999  99999987653222223321 22211111                         


Q ss_pred             hcCCCCcccCeEEEEeCcChhhHHHHHH-HHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHH
Q psy7710         135 KRNIPYKKCGKLIVALNEQLEPLHDLYE-RSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEE  213 (473)
Q Consensus       135 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~-~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~  213 (473)
                                .+.-.    .+.+...+. .....++ .++.++...-    |      +++.+ -.+.|-..|...+.+.
T Consensus        56 ----------~lvrE----IDALGG~Mg~~~D~~~I-Q~r~LN~sKG----P------AVra~-RaQaDk~~Y~~~mk~~  109 (621)
T COG0445          56 ----------HLVRE----IDALGGLMGKAADKAGI-QFRMLNSSKG----P------AVRAP-RAQADKWLYRRAMKNE  109 (621)
T ss_pred             ----------eeEEe----ehhccchHHHhhhhcCC-chhhccCCCc----c------hhcch-hhhhhHHHHHHHHHHH
Confidence                      11100    111111111 1112233 3333332110    0      11111 1245666777788887


Q ss_pred             HHH-cCcEEEeCceEEEEEEcCC--eEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         214 FCE-LGGEIRLNQQVESFKENPE--SVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       214 ~~~-~Gv~i~~~~~V~~i~~~~~--~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      ++. .+..++ ...|+++..+++  .+.|.|.+|..+.|+.||++||.+-
T Consensus       110 le~~~NL~l~-q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTFL  158 (621)
T COG0445         110 LENQPNLHLL-QGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTFL  158 (621)
T ss_pred             HhcCCCceeh-HhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeecccc
Confidence            775 467775 566778776554  3569999999999999999999763

>KOG0404|consensus

Probab=98.48  E-value=6.3e-07  Score=76.70  Aligned_cols=57  Identities=14%  Similarity=0.169  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHH
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADE  262 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~  262 (473)
                      ..+++.+.++.++.|.+|++. .|.+++....-+.+.|+.+ .+.||.||+|+|+-+..
T Consensus        70 ~~l~d~mrkqs~r~Gt~i~tE-tVskv~~sskpF~l~td~~-~v~~~avI~atGAsAkR  126 (322)
T KOG0404|consen   70 PELMDKMRKQSERFGTEIITE-TVSKVDLSSKPFKLWTDAR-PVTADAVILATGASAKR  126 (322)
T ss_pred             HHHHHHHHHHHHhhcceeeee-ehhhccccCCCeEEEecCC-ceeeeeEEEecccceee
Confidence            568888999999999999754 5888988888889998776 89999999999998743

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.47  E-value=1.2e-06  Score=87.44  Aligned_cols=46  Identities=11%  Similarity=0.189  Sum_probs=37.4

Q ss_pred             HHcCcEEEeCceEEEEEEcCCeEEEEcCC-Cc--EEEcCEEEEcCCcCh
Q psy7710         215 CELGGEIRLNQQVESFKENPESVTISTKQ-GD--HLESSYALVCAGLQA  260 (473)
Q Consensus       215 ~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~-g~--~i~ad~VV~aaG~~s  260 (473)
                      ++.|++++.+++|++|+.+++.+.+.+.+ +.  ++++|++|+|||...
T Consensus        69 ~~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~  117 (438)
T PRK13512         69 DRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASA  117 (438)
T ss_pred             HhCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCC
Confidence            45699999999999999988888877643 22  468899999999874

>PLN03000 amine oxidase

Probab=98.47  E-value=6.3e-06  Score=86.43  Aligned_cols=43  Identities=33%  Similarity=0.444  Sum_probs=38.9

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG  100 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~  100 (473)
                      ...+|+|||||++|+++|+.|++.  |.+|+|+|+.+++||....
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~--G~~V~VlE~~~riGGRi~T  225 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRF--GFKVTVLEGRKRPGGRVYT  225 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHC--CCcEEEEEccCcCCCCcce
Confidence            457999999999999999999999  8999999999899987544

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.47  E-value=1.3e-06  Score=85.72  Aligned_cols=35  Identities=14%  Similarity=0.418  Sum_probs=31.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .+|+|||||++|+++|..|++.++..+|+||++++
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~   37 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS   37 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence            48999999999999999999887778999999874

>KOG4254|consensus

Probab=98.46  E-value=4.7e-07  Score=85.45  Aligned_cols=57  Identities=21%  Similarity=0.198  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCe-EEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      ..+..++++.+++.|.+|.++..|.+|..++++ +.|...+|++++++.||-.++.|-
T Consensus       264 Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~  321 (561)
T KOG4254|consen  264 GAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWD  321 (561)
T ss_pred             hHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHH
Confidence            567888999999999999999999999987765 459999999999999999999994

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=98.45  E-value=6.7e-07  Score=95.20  Aligned_cols=49  Identities=12%  Similarity=0.217  Sum_probs=39.7

Q ss_pred             eeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChH
Q psy7710         201 VDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD  261 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~  261 (473)
                      +.-..+.+.|.+.+.+.|++|+++++|+++..            ...++|.||.|+|.+|.
T Consensus        94 i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~------------~~~~~D~VVgADG~~S~  142 (765)
T PRK08255         94 IGRKRLLNILQARCEELGVKLVFETEVPDDQA------------LAADADLVIASDGLNSR  142 (765)
T ss_pred             CCHHHHHHHHHHHHHHcCCEEEeCCccCchhh------------hhcCCCEEEEcCCCCHH
Confidence            44577889999999999999999999876532            12478999999999973

>PLN02976 amine oxidase

Probab=98.44  E-value=2.4e-06  Score=92.56  Aligned_cols=42  Identities=24%  Similarity=0.439  Sum_probs=37.7

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQT   99 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s   99 (473)
                      ...+|+|||||++|+++|+.|++.  |.+|+|+|+.+.+||...
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~--G~~V~VlEa~~~vGGri~  733 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQ--GFSVTVLEARSRIGGRVY  733 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHC--CCcEEEEeeccCCCCcee
Confidence            457999999999999999999999  899999999888887643

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.42  E-value=1.9e-06  Score=94.18  Aligned_cols=38  Identities=37%  Similarity=0.525  Sum_probs=34.5

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      ..+||+|||||++|+++|+.|++.  |.+|+|+|+++.+|
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~--G~~V~liD~~~~~G  199 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARA--GARVILVDEQPEAG  199 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCCCC
Confidence            357999999999999999999999  99999999986654

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.41  E-value=1.8e-06  Score=92.14  Aligned_cols=38  Identities=29%  Similarity=0.410  Sum_probs=34.1

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      ...+|+|||||++|+++|+.|+++  |++|+|+|+.+.+|
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~--G~~VtV~Ek~~~~G  575 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARA--GHPVTVFEREENAG  575 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHc--CCeEEEEecccccC
Confidence            456899999999999999999999  99999999986554

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.39  E-value=2.2e-06  Score=84.57  Aligned_cols=45  Identities=9%  Similarity=0.207  Sum_probs=36.2

Q ss_pred             HHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         214 FCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       214 ~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      +.+.|++++.++.|..+..++..  |.+.+|.++.+|++|+|||+..
T Consensus        68 ~~~~~i~~~~g~~V~~id~~~~~--v~~~~g~~~~yd~LViATGs~~  112 (396)
T PRK09754         68 WQENNVHLHSGVTIKTLGRDTRE--LVLTNGESWHWDQLFIATGAAA  112 (396)
T ss_pred             HHHCCCEEEcCCEEEEEECCCCE--EEECCCCEEEcCEEEEccCCCC
Confidence            34579999999999999876543  4445666899999999999875

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.39  E-value=1.3e-06  Score=85.19  Aligned_cols=48  Identities=6%  Similarity=0.063  Sum_probs=37.3

Q ss_pred             HHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         210 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       210 l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      +.+.+++.|++++. .+|++|+.+++.  |.+.+|+++++|++|+|+|+..
T Consensus        60 ~~~~~~~~gv~~~~-~~v~~id~~~~~--V~~~~g~~~~yD~LviAtG~~~  107 (364)
T TIGR03169        60 LRRLARQAGARFVI-AEATGIDPDRRK--VLLANRPPLSYDVLSLDVGSTT  107 (364)
T ss_pred             HHHHHHhcCCEEEE-EEEEEEecccCE--EEECCCCcccccEEEEccCCCC
Confidence            45556678999876 489999877664  5566776899999999999864

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.38  E-value=3.8e-06  Score=84.62  Aligned_cols=63  Identities=22%  Similarity=0.328  Sum_probs=48.7

Q ss_pred             HHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChH-HH--HHhcCCC
Q psy7710         208 RVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD-EM--ALKSGCS  270 (473)
Q Consensus       208 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~-~l--~~~~g~~  270 (473)
                      ..+.+.++++|++++++++|.++..+++++.+.+.+|.++++|.||+|+|...+ .+  ++.+|++
T Consensus       222 ~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~  287 (466)
T PRK07845        222 EVLEEVFARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVE  287 (466)
T ss_pred             HHHHHHHHHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCce
Confidence            346677788999999999999998766677777777778999999999998743 22  3455554

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=98.38  E-value=6e-06  Score=82.45  Aligned_cols=62  Identities=24%  Similarity=0.418  Sum_probs=47.9

Q ss_pred             HHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcC-hHHHHHhcCCCC
Q psy7710         208 RVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ-ADEMALKSGCSL  271 (473)
Q Consensus       208 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~-s~~l~~~~g~~~  271 (473)
                      ..+.+.+++.|+++++++.|.++..++. + +.+.+|.++.+|.||+|+|.. ...+++.+|+..
T Consensus       183 ~~~~~~l~~~gV~v~~~~~v~~i~~~~~-~-v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~  245 (427)
T TIGR03385       183 QIVEEELKKHEINLRLNEEVDSIEGEER-V-KVFTSGGVYQADMVILATGIKPNSELAKDSGLKL  245 (427)
T ss_pred             HHHHHHHHHcCCEEEeCCEEEEEecCCC-E-EEEcCCCEEEeCEEEECCCccCCHHHHHhcCccc
Confidence            3466677888999999999999976543 3 344556689999999999988 446778777654

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK12831 putative oxidoreductase; Provisional

Probab=98.37  E-value=8.6e-07  Score=88.91  Aligned_cols=38  Identities=26%  Similarity=0.354  Sum_probs=34.2

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      ...||+|||||++|+++|++|++.  |++|+|+|+.+.+|
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~--G~~V~v~e~~~~~G  176 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKM--GYDVTIFEALHEPG  176 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhC--CCeEEEEecCCCCC
Confidence            457999999999999999999999  99999999975544

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=98.36  E-value=9.9e-06  Score=77.91  Aligned_cols=73  Identities=14%  Similarity=0.227  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCC-cEEEcCEEEEcCCcCh----------HHHHHhcCCCC
Q psy7710         203 WGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQG-DHLESSYALVCAGLQA----------DEMALKSGCSL  271 (473)
Q Consensus       203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g-~~i~ad~VV~aaG~~s----------~~l~~~~g~~~  271 (473)
                      ...+...|...+++.||+|+++++|++|  +++++.+.+..+ ..++||.||+|+|+.|          -.+++.+|+.+
T Consensus        85 A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s~p~~Gs~g~gy~la~~lGh~i  162 (376)
T TIGR03862        85 AAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGASWSQLGSDGAWQQVLDQRGVSV  162 (376)
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCccccccCCCcHHHHHHHHCCCcc
Confidence            4678899999999999999999999999  334577776433 3699999999999854          37889999875


Q ss_pred             CCceeee
Q psy7710         272 EPAIVPF  278 (473)
Q Consensus       272 ~~~~~p~  278 (473)
                      - +.+|.
T Consensus       163 ~-~~~Pa  168 (376)
T TIGR03862       163 A-PFAPA  168 (376)
T ss_pred             c-CCcCe
Confidence            3 33443

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PLN02507 glutathione reductase

Probab=98.35  E-value=5.7e-06  Score=83.86  Aligned_cols=55  Identities=11%  Similarity=0.258  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      +...+.+.+++.|++++++++|+++..+++++.+.+.+|.++++|.||+|+|...
T Consensus       246 ~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~p  300 (499)
T PLN02507        246 MRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAP  300 (499)
T ss_pred             HHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCC
Confidence            3344667778899999999999999876667777777777899999999999874

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.35  E-value=5e-06  Score=83.34  Aligned_cols=56  Identities=13%  Similarity=0.192  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCe-EEEEcCCC-cEEEcCEEEEcCCcChH
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPES-VTISTKQG-DHLESSYALVCAGLQAD  261 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-v~v~~~~g-~~i~ad~VV~aaG~~s~  261 (473)
                      +...+.+.++++|+++++++.|+++..++++ +.++..+| ..+.+|.||+|+|...+
T Consensus       209 ~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn  266 (450)
T TIGR01421       209 ISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPN  266 (450)
T ss_pred             HHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcC
Confidence            3345677788899999999999999875433 56666666 57999999999998743

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.34  E-value=1e-06  Score=95.90  Aligned_cols=38  Identities=26%  Similarity=0.390  Sum_probs=34.0

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      ...+|+|||||++||++|++|+++  |++|+|+|+.+.+|
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~--G~~VtV~E~~~~~G  466 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKY--GVDVTVYEALHVVG  466 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCCc
Confidence            356899999999999999999999  99999999986544

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.33  E-value=3.6e-06  Score=83.76  Aligned_cols=51  Identities=10%  Similarity=0.034  Sum_probs=38.4

Q ss_pred             HHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEc--------CCCcEEEcCEEEEcCCcCh
Q psy7710         209 VMGEEFCELGGEIRLNQQVESFKENPESVTIST--------KQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       209 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~--------~~g~~i~ad~VV~aaG~~s  260 (473)
                      .+.+.+...|++++ ..+|++|+.+++.+.+.+        .+|.++.+|++|+|+|...
T Consensus        67 ~~~~~~~~~~~~~i-~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~  125 (424)
T PTZ00318         67 PVRPALAKLPNRYL-RAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARP  125 (424)
T ss_pred             HHHHHhccCCeEEE-EEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCccc
Confidence            35555666788875 578999998888777632        3455799999999999864

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.32  E-value=3e-06  Score=84.53  Aligned_cols=40  Identities=25%  Similarity=0.238  Sum_probs=34.0

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      ...+|+|||||++|+++|+.|+++.+|.+|+|+|+.+.++
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg   64 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF   64 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence            4568999999999999999999733389999999986553

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.31  E-value=1.1e-06  Score=88.08  Aligned_cols=38  Identities=29%  Similarity=0.390  Sum_probs=34.0

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      ...+|+|||||++|+++|+.|++.  |.+|+|+|+.+.+|
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~--G~~V~vie~~~~~G  169 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKA--GHSVTVFEALHKPG  169 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCCCC
Confidence            457999999999999999999999  99999999975444

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.31  E-value=1.4e-06  Score=93.00  Aligned_cols=38  Identities=26%  Similarity=0.402  Sum_probs=33.8

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      ...+|+|||||++|+++|+.|+++  |++|+|+|+.+.+|
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~--G~~V~v~e~~~~~G  467 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKR--GYDVTVFEALHEIG  467 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHC--CCeEEEEecCCCCC
Confidence            457999999999999999999999  99999999975443

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.30  E-value=8.2e-06  Score=82.35  Aligned_cols=54  Identities=28%  Similarity=0.489  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEc--CCC--cEEEcCEEEEcCCcCh
Q psy7710         207 TRVMGEEFCELGGEIRLNQQVESFKENPESVTIST--KQG--DHLESSYALVCAGLQA  260 (473)
Q Consensus       207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~--~~g--~~i~ad~VV~aaG~~s  260 (473)
                      ...+.+.++++|++++++++|+++..+++.+.+.+  .+|  .++++|.||+|+|...
T Consensus       216 ~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~p  273 (466)
T PRK07818        216 SKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAP  273 (466)
T ss_pred             HHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCccc
Confidence            34466778889999999999999987666555443  245  3699999999999774

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=98.30  E-value=1.7e-06  Score=86.90  Aligned_cols=158  Identities=18%  Similarity=0.274  Sum_probs=109.5

Q ss_pred             CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccccccccCCCCCCcccEEEEcCChHHHHHHHHHHhcCCCCeEE
Q psy7710           7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKIC   86 (473)
Q Consensus         7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~   86 (473)
                      ...||.||+++|+-.....  .-+.++........-++-...+...  ......+|||||+-|+-+|..|...  |++|.
T Consensus        99 ~~~YDkLilATGS~pfi~P--iPG~~~~~v~~~R~i~D~~am~~~a--r~~~~avVIGGGLLGlEaA~~L~~~--Gm~~~  172 (793)
T COG1251          99 TVSYDKLIIATGSYPFILP--IPGSDLPGVFVYRTIDDVEAMLDCA--RNKKKAVVIGGGLLGLEAARGLKDL--GMEVT  172 (793)
T ss_pred             EeecceeEEecCccccccC--CCCCCCCCeeEEecHHHHHHHHHHH--hccCCcEEEccchhhhHHHHHHHhC--CCceE
Confidence            5679999999996665444  2223322223233333222222221  1223479999999999999999999  99999


Q ss_pred             EEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHh
Q psy7710          87 LVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQ  166 (473)
Q Consensus        87 viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~  166 (473)
                      |++=.+.+.                                                              .        
T Consensus       173 Vvh~~~~lM--------------------------------------------------------------e--------  182 (793)
T COG1251         173 VVHIAPTLM--------------------------------------------------------------E--------  182 (793)
T ss_pred             EEeecchHH--------------------------------------------------------------H--------
Confidence            997653110                                                              0        


Q ss_pred             CCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcE
Q psy7710         167 NNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDH  246 (473)
Q Consensus       167 ~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~  246 (473)
                            +-+++                           .-...|.+.++++|++++++..++.+..++....++.++|..
T Consensus       183 ------rQLD~---------------------------~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~DG~~  229 (793)
T COG1251         183 ------RQLDR---------------------------TAGRLLRRKLEDLGIKVLLEKNTEEIVGEDKVEGVRFADGTE  229 (793)
T ss_pred             ------Hhhhh---------------------------HHHHHHHHHHHhhcceeecccchhhhhcCcceeeEeecCCCc
Confidence                  00010                           012337777888999999999998888766667799999989


Q ss_pred             EEcCEEEEcCCcC-hHHHHHhcCCCCCC
Q psy7710         247 LESSYALVCAGLQ-ADEMALKSGCSLEP  273 (473)
Q Consensus       247 i~ad~VV~aaG~~-s~~l~~~~g~~~~~  273 (473)
                      +.||.||+|+|.. ...++...|+..+.
T Consensus       230 i~ad~VV~a~GIrPn~ela~~aGlavnr  257 (793)
T COG1251         230 IPADLVVMAVGIRPNDELAKEAGLAVNR  257 (793)
T ss_pred             ccceeEEEecccccccHhHHhcCcCcCC
Confidence            9999999999998 67999999988755

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.30  E-value=8.4e-06  Score=82.40  Aligned_cols=54  Identities=17%  Similarity=0.280  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHcCcEEEeCceEEEEEE--cCCeEEEEcCCC--cEEEcCEEEEcCCcCh
Q psy7710         207 TRVMGEEFCELGGEIRLNQQVESFKE--NPESVTISTKQG--DHLESSYALVCAGLQA  260 (473)
Q Consensus       207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~--~~~~v~v~~~~g--~~i~ad~VV~aaG~~s  260 (473)
                      ...+.+.+++.|++++++++|+++..  +++...+.+.+|  .++.+|.||+|+|...
T Consensus       224 ~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p  281 (472)
T PRK05976        224 SKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRP  281 (472)
T ss_pred             HHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCcc
Confidence            34466677888999999999999985  344333444455  3689999999999874

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.30  E-value=2.4e-06  Score=91.50  Aligned_cols=38  Identities=24%  Similarity=0.366  Sum_probs=34.1

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      ...+|+|||||++|+++|+.|++.  |++|+|+|+.+.+|
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~--G~~VTV~Ek~~~lG  573 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARA--GHPVTVFEKKEKPG  573 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHC--CCeEEEEecccccC
Confidence            357999999999999999999999  99999999986544

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=98.29  E-value=5.1e-06  Score=82.57  Aligned_cols=106  Identities=23%  Similarity=0.347  Sum_probs=81.9

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHhc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKR  136 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (473)
                      ..+++|||+|.+|+.+|..|+++  |++|+++|+.+++++..                                      
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~--G~~v~l~e~~~~~~~~~--------------------------------------  175 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKR--GKKVTLIEAADRLGGQL--------------------------------------  175 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHc--CCeEEEEEcccccchhh--------------------------------------
Confidence            46899999999999999999999  99999999986443110                                      


Q ss_pred             CCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHHH
Q psy7710         137 NIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCE  216 (473)
Q Consensus       137 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  216 (473)
                                                            +                          . ..+...+.+.+++
T Consensus       176 --------------------------------------~--------------------------~-~~~~~~~~~~l~~  190 (415)
T COG0446         176 --------------------------------------L--------------------------D-PEVAEELAELLEK  190 (415)
T ss_pred             --------------------------------------h--------------------------h-HHHHHHHHHHHHH
Confidence                                                  0                          0 1244557778888


Q ss_pred             cCcEEEeCceEEEEEEcCCeEE---EEcCCCcEEEcCEEEEcCCcCh-HHHHHhc
Q psy7710         217 LGGEIRLNQQVESFKENPESVT---ISTKQGDHLESSYALVCAGLQA-DEMALKS  267 (473)
Q Consensus       217 ~Gv~i~~~~~V~~i~~~~~~v~---v~~~~g~~i~ad~VV~aaG~~s-~~l~~~~  267 (473)
                      .|+++++++.+.+|...++...   +.+.++..+++|.++++.|... ..+.+..
T Consensus       191 ~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~~~~  245 (415)
T COG0446         191 YGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLANDA  245 (415)
T ss_pred             CCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccHHHHhhC
Confidence            9999999999999998765433   4566666899999999999886 4555543

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.29  E-value=7.4e-06  Score=82.59  Aligned_cols=52  Identities=13%  Similarity=0.217  Sum_probs=39.6

Q ss_pred             HHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCC--C--cEEEcCEEEEcCCcCh
Q psy7710         208 RVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQ--G--DHLESSYALVCAGLQA  260 (473)
Q Consensus       208 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~--g--~~i~ad~VV~aaG~~s  260 (473)
                      ..+.+.++++ +++++++.|+++..+++++.++..+  +  .++++|.||+|+|...
T Consensus       219 ~~~~~~l~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p  274 (471)
T PRK06467        219 KVFTKRIKKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVP  274 (471)
T ss_pred             HHHHHHHhhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccc
Confidence            3456667777 9999999999998766666655432  2  3699999999999874

>KOG0029|consensus

Probab=98.28  E-value=8.9e-07  Score=88.44  Aligned_cols=42  Identities=24%  Similarity=0.439  Sum_probs=38.8

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQT   99 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s   99 (473)
                      ...+|+|||||++|++||.+|.+.  |.+|+|+|+.+++||+..
T Consensus        14 ~~~~VIVIGAGiaGLsAArqL~~~--G~~V~VLEARdRvGGRI~   55 (501)
T KOG0029|consen   14 KKKKVIVIGAGLAGLSAARQLQDF--GFDVLVLEARDRVGGRIY   55 (501)
T ss_pred             CCCcEEEECCcHHHHHHHHHHHHc--CCceEEEeccCCcCceeE
Confidence            567999999999999999999999  999999999999998753

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.28  E-value=9.7e-06  Score=80.67  Aligned_cols=61  Identities=13%  Similarity=0.264  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS  270 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~  270 (473)
                      +.+.+.+.++++|++++++++|+++..+  .  |.+++|+++++|.||+|+|...+.+.+.+|++
T Consensus       230 ~~~~~~~~L~~~gV~v~~~~~v~~v~~~--~--v~~~~g~~i~~d~vi~~~G~~~~~~~~~~~l~  290 (424)
T PTZ00318        230 LRKYGQRRLRRLGVDIRTKTAVKEVLDK--E--VVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVD  290 (424)
T ss_pred             HHHHHHHHHHHCCCEEEeCCeEEEEeCC--E--EEECCCCEEEccEEEEccCCCCcchhhhcCCc
Confidence            3445677788899999999999998643  2  55667778999999999998766677766654

>PRK06370 mercuric reductase; Validated

Probab=98.27  E-value=1.2e-05  Score=81.19  Aligned_cols=53  Identities=17%  Similarity=0.250  Sum_probs=40.6

Q ss_pred             HHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEc---CCCcEEEcCEEEEcCCcCh
Q psy7710         208 RVMGEEFCELGGEIRLNQQVESFKENPESVTIST---KQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       208 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~---~~g~~i~ad~VV~aaG~~s  260 (473)
                      ..+.+.+++.|++++++++|.++..+++++.+..   .++.++.+|.||+|+|...
T Consensus       216 ~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~p  271 (463)
T PRK06370        216 AAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVP  271 (463)
T ss_pred             HHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCc
Confidence            3466677789999999999999987765544332   2335799999999999774

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=98.27  E-value=1.2e-05  Score=80.79  Aligned_cols=54  Identities=11%  Similarity=0.246  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCC-cEEEcCEEEEcCCcCh
Q psy7710         207 TRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQG-DHLESSYALVCAGLQA  260 (473)
Q Consensus       207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g-~~i~ad~VV~aaG~~s  260 (473)
                      .+.+.+.+++.|++++++++|+++..++..+.+.+++. .++.+|.||+|+|...
T Consensus       214 ~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p  268 (458)
T PRK06912        214 AHILREKLENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKP  268 (458)
T ss_pred             HHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCcc
Confidence            34466777888999999999999987666665554322 3689999999999774

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.27  E-value=2.9e-06  Score=85.28  Aligned_cols=38  Identities=24%  Similarity=0.408  Sum_probs=33.9

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      ...+|+|||||++|+++|+.|+++  |.+|+|+|+.+.+|
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~--g~~V~lie~~~~~g  176 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARK--GYDVTIFEARDKAG  176 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhC--CCeEEEEccCCCCC
Confidence            457899999999999999999999  89999999986543

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.25  E-value=4.4e-06  Score=89.24  Aligned_cols=47  Identities=13%  Similarity=0.197  Sum_probs=38.1

Q ss_pred             HHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         212 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       212 ~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      +.+++.|++++++++|++|+.+..  .|.+.+|.++.+|++|+|||...
T Consensus        62 ~~~~~~gv~~~~g~~V~~Id~~~k--~V~~~~g~~~~yD~LVlATGs~p  108 (785)
T TIGR02374        62 DWYEKHGITLYTGETVIQIDTDQK--QVITDAGRTLSYDKLILATGSYP  108 (785)
T ss_pred             HHHHHCCCEEEcCCeEEEEECCCC--EEEECCCcEeeCCEEEECCCCCc
Confidence            345668999999999999987654  45667777899999999999864

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.23  E-value=1.3e-05  Score=80.93  Aligned_cols=54  Identities=20%  Similarity=0.355  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCC--C--cEEEcCEEEEcCCcCh
Q psy7710         207 TRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQ--G--DHLESSYALVCAGLQA  260 (473)
Q Consensus       207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~--g--~~i~ad~VV~aaG~~s  260 (473)
                      ...+.+.++++|++++++++|+++..+++.+.+...+  |  .++++|.||+|+|...
T Consensus       227 ~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p  284 (475)
T PRK06327        227 AKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVP  284 (475)
T ss_pred             HHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCcc
Confidence            3446667778899999999999998776666655332  3  4689999999999874

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.22  E-value=1.8e-05  Score=79.79  Aligned_cols=53  Identities=17%  Similarity=0.405  Sum_probs=40.4

Q ss_pred             HHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEc-----CCCcEEEcCEEEEcCCcCh
Q psy7710         208 RVMGEEFCELGGEIRLNQQVESFKENPESVTIST-----KQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       208 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~-----~~g~~i~ad~VV~aaG~~s  260 (473)
                      ..+.+.+++.|+++++++.|+++..+++++.+..     .++..+.+|.||+|+|...
T Consensus       219 ~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~p  276 (466)
T PRK06115        219 KTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRP  276 (466)
T ss_pred             HHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCcc
Confidence            4466777888999999999999987655554432     1235799999999999874

>KOG1336|consensus

Probab=98.22  E-value=9.6e-06  Score=77.78  Aligned_cols=55  Identities=20%  Similarity=0.337  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcC-C-eEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENP-E-SVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~-~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      +.+.+.++++++|++++.++.+.++..+. + ...|.+.+|.++.||.||+++|+-.
T Consensus       257 i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p  313 (478)
T KOG1336|consen  257 IGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKP  313 (478)
T ss_pred             HHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccc
Confidence            44557788899999999999999998765 3 3458899999999999999999873

>PRK07846 mycothione reductase; Reviewed

Probab=98.21  E-value=1.7e-05  Score=79.57  Aligned_cols=45  Identities=22%  Similarity=0.350  Sum_probs=38.6

Q ss_pred             HcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         216 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       216 ~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      +.|++++++++|+++..+++++.+.+.+|.++++|.||+|+|...
T Consensus       218 ~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~p  262 (451)
T PRK07846        218 SKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVP  262 (451)
T ss_pred             hcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCcc
Confidence            468999999999999877667777777777899999999999874

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.20  E-value=2.9e-05  Score=75.10  Aligned_cols=43  Identities=23%  Similarity=0.413  Sum_probs=34.9

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCC-CeEEEEeccCcccCccc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPK-MKICLVEKEKELGMHQT   99 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G-~~V~viE~~~~~g~~~s   99 (473)
                      +++|+|||+|.+|+.+|.+|.+.... .+|.|+|+.+.+|.|..
T Consensus         1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gia   44 (474)
T COG4529           1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIA   44 (474)
T ss_pred             CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCcc
Confidence            36899999999999999999876422 23999999988876643

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=98.16  E-value=2.6e-06  Score=77.24  Aligned_cols=42  Identities=24%  Similarity=0.459  Sum_probs=38.6

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG  100 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~  100 (473)
                      ++|++|||||++|+.+|..|++.  |.+|+||||++.+||.+-.
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~--gk~VLIvekR~HIGGNaYd   42 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQL--GKRVLIVEKRNHIGGNAYD   42 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHc--CCEEEEEeccccCCCcccc
Confidence            47999999999999999999999  9999999999999988744

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.14  E-value=1.3e-05  Score=77.86  Aligned_cols=38  Identities=26%  Similarity=0.330  Sum_probs=33.7

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      ...+|+|||+|++|+++|..|++.  |.+|+++|+.+.++
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~~g   54 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACL--GYEVHVYDKLPEPG   54 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCCCCC
Confidence            346899999999999999999999  89999999986543

>KOG1346|consensus

Probab=98.13  E-value=1.5e-05  Score=74.65  Aligned_cols=78  Identities=19%  Similarity=0.263  Sum_probs=68.0

Q ss_pred             ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcC-hHHHHHhcCCCCCCceee
Q psy7710         200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ-ADEMALKSGCSLEPAIVP  277 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~-s~~l~~~~g~~~~~~~~p  277 (473)
                      .+-|.-+.++-.+.+++.||.++-|..|.++....+.+.++.++|.+++.|.||+|+|.- ..+|++..|+++|..+-.
T Consensus       389 kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGG  467 (659)
T KOG1346|consen  389 KILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGG  467 (659)
T ss_pred             hhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCc
Confidence            355777888889999999999999999999998888889999999999999999999988 678999999887655443

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.13  E-value=2.8e-05  Score=78.45  Aligned_cols=55  Identities=15%  Similarity=0.243  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCC-eEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPE-SVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      +.+.+.+.++++|+++++++.|+++..+++ ...+.+.++.++++|.||+|+|...
T Consensus       233 ~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~P  288 (486)
T TIGR01423       233 LRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVP  288 (486)
T ss_pred             HHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCc
Confidence            344577778889999999999999986543 3556666666899999999999774

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.12  E-value=3.2e-05  Score=75.38  Aligned_cols=36  Identities=31%  Similarity=0.393  Sum_probs=32.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      .||+|||||++|+.+|+.|+++  |.+|+|+|+.+..+
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~--G~~V~LiE~rp~~~   36 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQA--GVPVILYEMRPEKL   36 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhC--CCcEEEEecccccc
Confidence            4799999999999999999999  99999999876543

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.12  E-value=3.3e-05  Score=78.06  Aligned_cols=54  Identities=17%  Similarity=0.153  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCC---cEEEcCEEEEcCCcCh
Q psy7710         207 TRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQG---DHLESSYALVCAGLQA  260 (473)
Q Consensus       207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g---~~i~ad~VV~aaG~~s  260 (473)
                      ...+.+.++++|+++++++.+.++...++.+.|+..++   .++.+|.||+|+|...
T Consensus       223 ~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~p  279 (484)
T TIGR01438       223 ANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDA  279 (484)
T ss_pred             HHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCc
Confidence            34466778889999999999999987666655554433   3799999999999874

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR03452 mycothione_red mycothione reductase

Probab=98.11  E-value=3.6e-05  Score=77.19  Aligned_cols=45  Identities=22%  Similarity=0.393  Sum_probs=38.3

Q ss_pred             HcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         216 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       216 ~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      +.|+++++++.|+++..+++++.+++.+|.++++|.||+|+|...
T Consensus       221 ~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~p  265 (452)
T TIGR03452       221 KKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVP  265 (452)
T ss_pred             hcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCc
Confidence            458999999999999877767777777777899999999999874

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.11  E-value=1.8e-05  Score=84.73  Aligned_cols=47  Identities=9%  Similarity=0.157  Sum_probs=37.5

Q ss_pred             HHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         212 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       212 ~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      +.+++.|++++.++.|++|..+..  .|.+.+|..+.+|++|+|||...
T Consensus        67 ~~~~~~gI~~~~g~~V~~Id~~~~--~V~~~~G~~i~yD~LVIATGs~p  113 (847)
T PRK14989         67 GFYEKHGIKVLVGERAITINRQEK--VIHSSAGRTVFYDKLIMATGSYP  113 (847)
T ss_pred             HHHHhCCCEEEcCCEEEEEeCCCc--EEEECCCcEEECCEEEECCCCCc
Confidence            345567999999999999977543  45567777899999999999874

>PLN02546 glutathione reductase

Probab=98.10  E-value=4.2e-05  Score=78.19  Aligned_cols=65  Identities=14%  Similarity=0.215  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHcCcEEEeCceEEEEEEc-CCeEEEEcCCCcEEEcCEEEEcCCcChH-HH--HHhcCCCC
Q psy7710         207 TRVMGEEFCELGGEIRLNQQVESFKEN-PESVTISTKQGDHLESSYALVCAGLQAD-EM--ALKSGCSL  271 (473)
Q Consensus       207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~v~~~~g~~i~ad~VV~aaG~~s~-~l--~~~~g~~~  271 (473)
                      ...+.+.++++|+++++++.|.++..+ ++.+.+.++++....+|.||+|+|...+ .+  ++.+|++.
T Consensus       296 ~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~  364 (558)
T PLN02546        296 RDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKM  364 (558)
T ss_pred             HHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcC
Confidence            344667778899999999999999764 3445666666633448999999998843 22  45666654

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.09  E-value=8.6e-06  Score=85.24  Aligned_cols=38  Identities=18%  Similarity=0.344  Sum_probs=34.0

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      ...+|+|||||++|+++|+.|++.  |.+|+|+|+.+.+|
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~--G~~Vtv~e~~~~~G  229 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRK--GHDVTIFDANEQAG  229 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCCC
Confidence            346899999999999999999999  99999999986554

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.09  E-value=1.1e-05  Score=81.20  Aligned_cols=38  Identities=26%  Similarity=0.448  Sum_probs=33.9

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      ...+|+|||+|++|+++|+.|++.  |.+|+|+|+.+.+|
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~--G~~V~i~e~~~~~g  177 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARA--GVQVVVFDRHPEIG  177 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCC
Confidence            456899999999999999999999  89999999986554

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PTZ00058 glutathione reductase; Provisional

Probab=98.09  E-value=4.5e-05  Score=77.96  Aligned_cols=54  Identities=17%  Similarity=0.217  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHcCcEEEeCceEEEEEEcCC-eEEEEc-CCCcEEEcCEEEEcCCcCh
Q psy7710         207 TRVMGEEFCELGGEIRLNQQVESFKENPE-SVTIST-KQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~v~v~~-~~g~~i~ad~VV~aaG~~s  260 (473)
                      .+.+.+.+++.|+++++++.|.++..+++ ++.+.. .++.++++|.||+|+|...
T Consensus       281 ~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~P  336 (561)
T PTZ00058        281 INELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSP  336 (561)
T ss_pred             HHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCC
Confidence            34466778889999999999999986543 455443 3334799999999999763

>KOG2311|consensus

Probab=98.08  E-value=1.6e-05  Score=75.77  Aligned_cols=151  Identities=20%  Similarity=0.282  Sum_probs=84.3

Q ss_pred             CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc-CcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHH
Q psy7710          55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE-KELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYF  133 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~-~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (473)
                      ...+||||||||.+|+.+|...++.  |.+.+++-.+ +.+|.-+...+.|.+..+.....                   
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~--Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrE-------------------   84 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARL--GARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMRE-------------------   84 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhc--CCceEEeecccccccccccCcccCCcccceeeee-------------------
Confidence            3679999999999999999999999  8999998865 24444333344444332211000                   


Q ss_pred             HhcCCCCcccCeEEEEeCcChhhHHHHHH-HHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHH
Q psy7710         134 DKRNIPYKKCGKLIVALNEQLEPLHDLYE-RSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGE  212 (473)
Q Consensus       134 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~-~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~  212 (473)
                                          .+.+..... .+...++ ..+.++...          --++|.+. .++|-..|...+.+
T Consensus        85 --------------------VDALdGl~~rvcD~s~v-q~k~LNrs~----------GPAVwg~R-AQiDR~lYkk~MQk  132 (679)
T KOG2311|consen   85 --------------------VDALDGLCSRVCDQSGV-QYKVLNRSK----------GPAVWGLR-AQIDRKLYKKNMQK  132 (679)
T ss_pred             --------------------ehhhcchHhhhhhhhhh-hHHHhhccC----------CCcccChH-HhhhHHHHHHHHHH
Confidence                                000110000 0011111 111111100          01233332 24565666677776


Q ss_pred             HHHH-cCcEEEeCceEEEEEEc-CC-----eEEEEcCCCcEEEcCEEEEcCCcC
Q psy7710         213 EFCE-LGGEIRLNQQVESFKEN-PE-----SVTISTKQGDHLESSYALVCAGLQ  259 (473)
Q Consensus       213 ~~~~-~Gv~i~~~~~V~~i~~~-~~-----~v~v~~~~g~~i~ad~VV~aaG~~  259 (473)
                      .+.. .+.+|+. ..|.++... ++     ...|.+.+|..+.|+.||++||.+
T Consensus       133 ei~st~nL~ire-~~V~dliv~~~~~~~~~~~gV~l~dgt~v~a~~VilTTGTF  185 (679)
T KOG2311|consen  133 EISSTPNLEIRE-GAVADLIVEDPDDGHCVVSGVVLVDGTVVYAESVILTTGTF  185 (679)
T ss_pred             HhccCCcchhhh-hhhhheeeccCCCCceEEEEEEEecCcEeccceEEEeeccc
Confidence            6643 4667764 445565533 22     234778889899999999999976

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.07  E-value=1.2e-05  Score=80.99  Aligned_cols=38  Identities=32%  Similarity=0.476  Sum_probs=34.0

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      ...+|+|||+|++|+++|+.|+++  |.+|+|+|+.+.+|
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~--G~~V~vie~~~~~G  179 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARA--GHKVTVFERADRIG  179 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhC--CCcEEEEecCCCCC
Confidence            457999999999999999999999  89999999986544

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.06  E-value=1.1e-05  Score=84.69  Aligned_cols=38  Identities=26%  Similarity=0.465  Sum_probs=34.0

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      ...+|+|||||++|+++|+.|++.  |.+|+|+|+.+.+|
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~--G~~V~V~E~~~~~G  363 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARN--GVAVTVYDRHPEIG  363 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCCC
Confidence            356899999999999999999999  99999999986554

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=98.05  E-value=4.9e-06  Score=80.26  Aligned_cols=40  Identities=28%  Similarity=0.512  Sum_probs=36.2

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCccc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQT   99 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s   99 (473)
                      +||+|||||++|+++|++|++.  |.+|+|+|+++.+|+.+.
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~--G~~V~viEk~~~iGG~~~   41 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQL--NKRVLVVEKRNHIGGNCY   41 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC--CCeEEEEecCCCCCCcee
Confidence            6999999999999999999998  899999999877887543

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.05  E-value=1.8e-05  Score=76.21  Aligned_cols=52  Identities=13%  Similarity=0.249  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHcC-cEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         206 VTRVMGEEFCELG-GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       206 ~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      ....+.+.+++.+ ++++ ..+|++|+.+++.|.+.  ++..+.+|++|+|.|+..
T Consensus        59 i~~p~~~~~~~~~~v~~~-~~~V~~ID~~~k~V~~~--~~~~i~YD~LVvalGs~~  111 (405)
T COG1252          59 IAIPLRALLRKSGNVQFV-QGEVTDIDRDAKKVTLA--DLGEISYDYLVVALGSET  111 (405)
T ss_pred             eeccHHHHhcccCceEEE-EEEEEEEcccCCEEEeC--CCccccccEEEEecCCcC
Confidence            3334666666555 7776 56799999888776554  344899999999999875

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.01  E-value=5.5e-06  Score=80.77  Aligned_cols=38  Identities=32%  Similarity=0.469  Sum_probs=35.6

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQ   98 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~   98 (473)
                      +|+|+|||++||+||++|+++  |++|+|+|+++.+||-+
T Consensus         2 rVai~GaG~AgL~~a~~La~~--g~~vt~~ea~~~~GGk~   39 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADA--GYDVTLYEARDRLGGKV   39 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhC--CCceEEEeccCccCcee
Confidence            699999999999999999999  99999999998888764

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=1.5e-05  Score=73.07  Aligned_cols=57  Identities=7%  Similarity=0.119  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEc---CCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKEN---PESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~---~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      +++...|.+..++..+.++.-.+++++...   ++-..|++.+|..++++.||+++|+.=
T Consensus       266 pkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArW  325 (520)
T COG3634         266 PKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARW  325 (520)
T ss_pred             hHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcch
Confidence            567788888888888998888888888864   345679999998999999999999864

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.99  E-value=0.00015  Score=74.67  Aligned_cols=59  Identities=10%  Similarity=0.039  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHcCcEEEeCceEEEEEEc-CCeE-EEE---cCCC--cEEEcCEEEEcCCcChH
Q psy7710         203 WGLVTRVMGEEFCELGGEIRLNQQVESFKEN-PESV-TIS---TKQG--DHLESSYALVCAGLQAD  261 (473)
Q Consensus       203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v-~v~---~~~g--~~i~ad~VV~aaG~~s~  261 (473)
                      ...+...|.+.+++.|++++.++.++++..+ ++.+ .|.   ..+|  ..+.|+.||+|||+++.
T Consensus       125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~  190 (570)
T PRK05675        125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGGAGR  190 (570)
T ss_pred             HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCCccc
Confidence            4678889999898899999999999999875 4443 232   3455  35789999999999874

>KOG0405|consensus

Probab=97.99  E-value=9.3e-05  Score=68.00  Aligned_cols=49  Identities=37%  Similarity=0.511  Sum_probs=41.3

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEe
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHA  108 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~  108 (473)
                      .+||.+|||||-.|+++|.+.++.  |.+|.|+|..  .+-|.++.|.|++..
T Consensus        19 k~fDylvIGgGSGGvasARrAa~~--GAkv~l~E~~--f~lGGTCVn~GCVPK   67 (478)
T KOG0405|consen   19 KDFDYLVIGGGSGGVASARRAASH--GAKVALCELP--FGLGGTCVNVGCVPK   67 (478)
T ss_pred             cccceEEEcCCcchhHHhHHHHhc--CceEEEEecC--CCcCceEEeeccccc
Confidence            589999999999999999999999  9999999986  344566677777643

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=97.98  E-value=9.9e-05  Score=69.84  Aligned_cols=32  Identities=34%  Similarity=0.427  Sum_probs=29.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .+|+|||+|.+|+-+|..|++.  +.+|+++++.
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~~--~~~V~~v~~~  173 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTRI--AKKVTLVHRR  173 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHhh--cCEEEEEEeC
Confidence            5799999999999999999998  8999999986

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=97.96  E-value=0.0012  Score=64.68  Aligned_cols=40  Identities=28%  Similarity=0.308  Sum_probs=33.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcC--CCCeEEEEeccCcccCc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNY--PKMKICLVEKEKELGMH   97 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~--~G~~V~viE~~~~~g~~   97 (473)
                      .++-|||+|+++|++|.+|-+.+  ||.+|+|+|+.+..||.
T Consensus         3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGs   44 (500)
T PF06100_consen    3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGS   44 (500)
T ss_pred             ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCc
Confidence            46789999999999999998764  68899999999655554

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.96  E-value=1.8e-05  Score=82.85  Aligned_cols=38  Identities=24%  Similarity=0.415  Sum_probs=34.0

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      ...+|+|||+|++|+++|+.|++.  |.+|+|+|+.+.+|
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~--G~~Vtv~e~~~~~G  346 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARA--GVQVDVFDRHPEIG  346 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHc--CCcEEEEeCCCCCC
Confidence            357899999999999999999999  89999999986543

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.95  E-value=2.4e-05  Score=79.09  Aligned_cols=37  Identities=32%  Similarity=0.460  Sum_probs=33.4

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      ..+|+|||+|++|+++|..|+++  |.+|+|+|+.+.+|
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~--g~~V~v~e~~~~~g  179 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRA--GHTVTVFEREDRCG  179 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHc--CCeEEEEecCCCCC
Confidence            46899999999999999999999  89999999986544

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>KOG1276|consensus

Probab=97.95  E-value=1e-05  Score=76.29  Aligned_cols=42  Identities=36%  Similarity=0.446  Sum_probs=37.5

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMH   97 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~   97 (473)
                      ...+|+|||||++||++||+|++++|...|+|+|+.+++||-
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGw   51 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGW   51 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccce
Confidence            357899999999999999999999777788889999988865

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.95  E-value=1.3e-05  Score=76.73  Aligned_cols=37  Identities=22%  Similarity=0.383  Sum_probs=27.1

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL   94 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~   94 (473)
                      .+|+++||.|+++|++|..|.+.. ..++..+|+.+.+
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~-~~~~~f~e~~~~f   38 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHG-DLKALFLERRPSF   38 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH----EEEEES-SS-
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcC-CCCEEEEecCCCC
Confidence            479999999999999999999884 4899999998643

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.91  E-value=0.00015  Score=73.16  Aligned_cols=53  Identities=19%  Similarity=0.311  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHcCcEEEeCceEEEEEEcCC-eEEEEc--CCCcEEEcCEEEEcCCcCh
Q psy7710         207 TRVMGEEFCELGGEIRLNQQVESFKENPE-SVTIST--KQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~v~v~~--~~g~~i~ad~VV~aaG~~s  260 (473)
                      ...+.+.++++ ++++++++|.++..+++ .+.++.  .++.++.+|.||+|+|...
T Consensus       213 ~~~~~~~l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p  268 (460)
T PRK06292        213 SKQAQKILSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRP  268 (460)
T ss_pred             HHHHHHHHhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCcc
Confidence            34466677778 99999999999987654 455433  2334799999999999863

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=97.89  E-value=0.0002  Score=69.95  Aligned_cols=59  Identities=19%  Similarity=0.194  Sum_probs=45.8

Q ss_pred             HHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710         208 RVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS  270 (473)
Q Consensus       208 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~  270 (473)
                      ..+.+.++++|++++++++|+++..+    .|.+.+|.++.+|.||+|+|.....++...|+.
T Consensus       195 ~~~~~~l~~~gV~v~~~~~v~~i~~~----~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~gl~  253 (364)
T TIGR03169       195 RLVLRLLARRGIEVHEGAPVTRGPDG----ALILADGRTLPADAILWATGARAPPWLAESGLP  253 (364)
T ss_pred             HHHHHHHHHCCCEEEeCCeeEEEcCC----eEEeCCCCEEecCEEEEccCCChhhHHHHcCCC
Confidence            34667778899999999999988532    355667778999999999998866666666654

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=97.86  E-value=1.7e-05  Score=75.88  Aligned_cols=40  Identities=40%  Similarity=0.603  Sum_probs=37.2

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQ   98 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~   98 (473)
                      .-+++|||||++|+++|+.|++.  |.+|.++||++.+||..
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~--G~~v~LVEKepsiGGrm  163 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADM--GFKVYLVEKEPSIGGRM  163 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHc--CCeEEEEecCCcccccH
Confidence            45799999999999999999999  99999999999998874

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.84  E-value=0.00017  Score=74.88  Aligned_cols=34  Identities=18%  Similarity=0.182  Sum_probs=30.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKE   93 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~   93 (473)
                      .+|+|||||.+|+..|..|++.  |.+|+++|+.+.
T Consensus       313 k~VvIVGgG~iGvE~A~~l~~~--G~eVTLIe~~~~  346 (659)
T PTZ00153        313 NYMGIVGMGIIGLEFMDIYTAL--GSEVVSFEYSPQ  346 (659)
T ss_pred             CceEEECCCHHHHHHHHHHHhC--CCeEEEEeccCc
Confidence            4799999999999999999998  899999998753

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=97.84  E-value=5.2e-05  Score=75.77  Aligned_cols=53  Identities=28%  Similarity=0.429  Sum_probs=43.1

Q ss_pred             HHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         208 RVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       208 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      ..+...+...|.+|+++++|++|..+++++.|.+.+|.+++||+||+|+....
T Consensus       213 ~~~~~~~~~~g~~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  265 (450)
T PF01593_consen  213 LALALAAEELGGEIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSV  265 (450)
T ss_dssp             HHHHHHHHHHGGGEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHH
T ss_pred             HHHHHHHhhcCceeecCCcceeccccccccccccccceEEecceeeecCchhh
Confidence            33444555567899999999999999999999999988999999999998763

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PRK10262 thioredoxin reductase; Provisional

Probab=97.80  E-value=0.00033  Score=67.07  Aligned_cols=33  Identities=27%  Similarity=0.382  Sum_probs=30.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .+|+|||+|.+|+.+|..|++.  +.+|+++++.+
T Consensus       147 ~~vvVvGgG~~g~e~A~~l~~~--~~~Vtlv~~~~  179 (321)
T PRK10262        147 QKVAVIGGGNTAVEEALYLSNI--ASEVHLIHRRD  179 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhh--CCEEEEEEECC
Confidence            3799999999999999999999  89999999873

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.80  E-value=2.8e-05  Score=76.84  Aligned_cols=36  Identities=28%  Similarity=0.407  Sum_probs=33.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      .+|+|||||++|+++|..|++.  |++|+++|+.+.+|
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~--G~~Vtv~e~~~~~G  159 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRA--GHDVTVFERVALDG  159 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhC--CCeEEEeCCcCCCc
Confidence            6899999999999999999999  99999999986554

>PRK13984 putative oxidoreductase; Provisional

Probab=97.80  E-value=7e-05  Score=78.16  Aligned_cols=38  Identities=24%  Similarity=0.288  Sum_probs=33.9

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      ...+|+|||+|++|+++|..|+++  |.+|+|+|+.+.+|
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~--G~~v~vie~~~~~g  319 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATM--GYEVTVYESLSKPG  319 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCCC
Confidence            456899999999999999999999  99999999986543

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.77  E-value=0.00027  Score=72.13  Aligned_cols=33  Identities=30%  Similarity=0.427  Sum_probs=30.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .+|+|||||.+|+.+|..|++.  +.+|+++++.+
T Consensus       353 k~VvViGgG~~g~E~A~~L~~~--g~~Vtli~~~~  385 (515)
T TIGR03140       353 KDVAVIGGGNSGIEAAIDLAGI--VRHVTVLEFAD  385 (515)
T ss_pred             CEEEEECCcHHHHHHHHHHHhc--CcEEEEEEeCC
Confidence            3799999999999999999988  89999999763

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.74  E-value=7.6e-05  Score=77.15  Aligned_cols=38  Identities=29%  Similarity=0.447  Sum_probs=33.7

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      ...+|+|||+|++|+++|+.|++.  |.+|+|+|+.+.+|
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~--G~~V~v~e~~~~~G  173 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRM--GHAVTIFEAGPKLG  173 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCCC
Confidence            346899999999999999999999  89999999986554

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.71  E-value=0.00022  Score=69.15  Aligned_cols=32  Identities=34%  Similarity=0.429  Sum_probs=28.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCe-EEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMK-ICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~-V~viE~~   91 (473)
                      ..|+|||+|..|+.+|..|++.  |.+ |+|+++.
T Consensus       173 ~~vvViG~G~~g~e~A~~l~~~--g~~~Vtvi~~~  205 (352)
T PRK12770        173 KKVVVVGAGLTAVDAALEAVLL--GAEKVYLAYRR  205 (352)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc--CCCeEEEEeec
Confidence            4799999999999999999988  776 9999975

>KOG4716|consensus

Probab=97.70  E-value=0.00097  Score=61.23  Aligned_cols=35  Identities=31%  Similarity=0.439  Sum_probs=32.3

Q ss_pred             CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ..+||.+|||||-+||+||.+.+..  |.+|.++|--
T Consensus        17 sydyDLIviGgGSgGLacaKeAa~~--G~kV~~lDfV   51 (503)
T KOG4716|consen   17 SYDYDLIVIGGGSGGLACAKEAADL--GAKVACLDFV   51 (503)
T ss_pred             cCCccEEEEcCCcchhhHHHHHHhc--CCcEEEEeec
Confidence            3679999999999999999999999  9999999964

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=97.68  E-value=0.00098  Score=68.79  Aligned_cols=59  Identities=3%  Similarity=-0.027  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEE-EE---cCCC--cEEEcCEEEEcCCcChH
Q psy7710         203 WGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVT-IS---TKQG--DHLESSYALVCAGLQAD  261 (473)
Q Consensus       203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~---~~~g--~~i~ad~VV~aaG~~s~  261 (473)
                      ...++..|.+.+++.|++|+.++.+++|..+++.+. +.   ..+|  ..+.|+.||+|||+++.
T Consensus       118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~  182 (565)
T TIGR01816       118 GHAILHTLYQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGGYGR  182 (565)
T ss_pred             hHHHHHHHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCCccc
Confidence            356888999999999999999999999997665543 32   3345  35789999999999864

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.68  E-value=4.8e-05  Score=73.73  Aligned_cols=35  Identities=26%  Similarity=0.315  Sum_probs=32.2

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL   94 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~   94 (473)
                      .||+|||||++|+.+|+.|+++  |++|+|+|+.+..
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~--Gl~V~LiE~rp~~   37 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKR--GVPVELYEMRPVK   37 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhC--CCcEEEEEccCcc
Confidence            5899999999999999999999  9999999987543

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.63  E-value=0.0042  Score=67.25  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=25.3

Q ss_pred             CCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEec
Q psy7710           8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEK   42 (473)
Q Consensus         8 ~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~   42 (473)
                      +.++.+|||+|.||.++|..++..  +..+.+++.
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~--G~~VTV~Ek  568 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARA--GHPVTVFEK  568 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHC--CCeEEEEec
Confidence            347899999999999999999854  345555543

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.56  E-value=0.00097  Score=66.87  Aligned_cols=32  Identities=28%  Similarity=0.358  Sum_probs=30.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .+|+|||+|..|+-+|..|++.  |.+|+++++.
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~--G~~Vtlv~~~  304 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRL--GAEVHCLYRR  304 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc--CCEEEEEeec
Confidence            4799999999999999999999  8999999986

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.51  E-value=0.0016  Score=62.54  Aligned_cols=37  Identities=27%  Similarity=0.324  Sum_probs=29.7

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ....|+|||||.++..++..|.+.++..+|+++-|++
T Consensus       189 ~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~  225 (341)
T PF13434_consen  189 AGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP  225 (341)
T ss_dssp             --EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS
T ss_pred             CCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC
Confidence            5678999999999999999999985556999999874

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=0.0096  Score=55.97  Aligned_cols=60  Identities=18%  Similarity=0.205  Sum_probs=42.3

Q ss_pred             HHHHHHHc-CcEEEeCceEEEEEEcC-CeEEEEcCCC--cEEEcCEEEEcCCcC-hHHHHHhcCC
Q psy7710         210 MGEEFCEL-GGEIRLNQQVESFKENP-ESVTISTKQG--DHLESSYALVCAGLQ-ADEMALKSGC  269 (473)
Q Consensus       210 l~~~~~~~-Gv~i~~~~~V~~i~~~~-~~v~v~~~~g--~~i~ad~VV~aaG~~-s~~l~~~~g~  269 (473)
                      +.+.++++ ++++++++.+.+|.-++ ..+.++...+  ..+.+|.|+++.|.- ...+.+..++
T Consensus       184 ~~~~l~~~~~i~~~~~~~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~  248 (305)
T COG0492         184 LVERLKKNVKIEVLTNTVVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGV  248 (305)
T ss_pred             HHHHHHhcCCeEEEeCCceeEEecCccceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccc
Confidence            44455544 79999999999998776 3445544323  367899999999987 4467766554

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.40  E-value=0.0014  Score=66.01  Aligned_cols=32  Identities=31%  Similarity=0.434  Sum_probs=29.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      -+|+|||+|.+|+-+|..|++.  |. +|+++++.
T Consensus       274 ~~VvViGgG~~g~e~A~~l~~~--G~~~Vtlv~~~  306 (457)
T PRK11749        274 KRVVVIGGGNTAMDAARTAKRL--GAESVTIVYRR  306 (457)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc--CCCeEEEeeec
Confidence            4799999999999999999988  77 89999986

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=97.38  E-value=0.0011  Score=65.01  Aligned_cols=45  Identities=20%  Similarity=0.324  Sum_probs=33.8

Q ss_pred             CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCC
Q psy7710          55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGH  101 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~  101 (473)
                      +.++||+|+|.|+.-+.+|..|++.  |.+|+.+|+++..|+...+.
T Consensus         2 ~~~yDviI~GTGl~esila~als~~--GkkVLhiD~n~yYGg~~asl   46 (438)
T PF00996_consen    2 DEEYDVIILGTGLTESILAAALSRS--GKKVLHIDRNDYYGGEWASL   46 (438)
T ss_dssp             -SBESEEEE--SHHHHHHHHHHHHT--T--EEEE-SSSSSCGGG-EE
T ss_pred             CccceEEEECCCcHHHHHHHHHHhc--CCEEEecCCCCCcCCchhcc
Confidence            4689999999999999999999999  99999999998777665443

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.37  E-value=0.0018  Score=71.24  Aligned_cols=61  Identities=21%  Similarity=0.235  Sum_probs=45.3

Q ss_pred             HHHHHHHcCcEEEeCceEEEEEEcCCe--EEEE--cCCCcEEEcCEEEEcCCcC-hHHHHHhcCCC
Q psy7710         210 MGEEFCELGGEIRLNQQVESFKENPES--VTIS--TKQGDHLESSYALVCAGLQ-ADEMALKSGCS  270 (473)
Q Consensus       210 l~~~~~~~Gv~i~~~~~V~~i~~~~~~--v~v~--~~~g~~i~ad~VV~aaG~~-s~~l~~~~g~~  270 (473)
                      +.+.+++.|+++++++.|+++..++..  +.+.  ..++.++.||.|+++.|.. ..+|+..+|..
T Consensus       357 l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~  422 (985)
T TIGR01372       357 ARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGK  422 (985)
T ss_pred             HHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCC
Confidence            334567789999999999999765532  3343  2244679999999999988 56788887754

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>KOG0405|consensus

Probab=97.35  E-value=0.0033  Score=58.13  Aligned_cols=54  Identities=15%  Similarity=0.190  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCe-EEEEcCCCcEEEcCEEEEcCCcC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQ  259 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-v~v~~~~g~~i~ad~VV~aaG~~  259 (473)
                      +...+.+.++..|++++.++.++++.+.+.+ ..+.+..|....+|.++.|+|--
T Consensus       232 i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~  286 (478)
T KOG0405|consen  232 ISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRK  286 (478)
T ss_pred             HHHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCC
Confidence            3344667788899999999999999987655 55666666334489999999976

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.32  E-value=0.00034  Score=69.07  Aligned_cols=38  Identities=18%  Similarity=0.280  Sum_probs=32.8

Q ss_pred             CcccEEEEcCChHHHHHHHHHH-hcCCCCeEEEEeccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELK-LNYPKMKICLVEKEKELG   95 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~-~~~~G~~V~viE~~~~~g   95 (473)
                      ....|+|||||++|+.+|.+|+ +.  |.+|+|+|+.+.++
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~--g~~VtlfEk~p~pg   76 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHE--RVKVDIFEKLPNPY   76 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhc--CCeEEEEecCCCCc
Confidence            3467999999999999999875 55  89999999997765

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.29  E-value=0.0021  Score=65.83  Aligned_cols=33  Identities=30%  Similarity=0.372  Sum_probs=30.2

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .+|+|||||.+|+.+|..|+..  +.+|+|+++.+
T Consensus       352 k~VvVVGgG~~g~e~A~~L~~~--~~~Vtlv~~~~  384 (517)
T PRK15317        352 KRVAVIGGGNSGVEAAIDLAGI--VKHVTVLEFAP  384 (517)
T ss_pred             CEEEEECCCHHHHHHHHHHHhc--CCEEEEEEECc
Confidence            3799999999999999999998  89999999874

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.24  E-value=0.0004  Score=73.82  Aligned_cols=35  Identities=20%  Similarity=0.295  Sum_probs=32.2

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ...+|+|||||++|+++|++|++.  |++|+|+|+.+
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~--Gh~Vtv~E~~~  416 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRS--GHNVTAIDGLK  416 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhC--CCeEEEEcccc
Confidence            456899999999999999999999  99999999864

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.23  E-value=0.0029  Score=63.97  Aligned_cols=60  Identities=22%  Similarity=0.269  Sum_probs=41.4

Q ss_pred             HHHHHHcCcEEEeCceEEEEEEcCCeEE-EE-----cCC-------C--cEEEcCEEEEcCCcCh--HHHHHhcCCC
Q psy7710         211 GEEFCELGGEIRLNQQVESFKENPESVT-IS-----TKQ-------G--DHLESSYALVCAGLQA--DEMALKSGCS  270 (473)
Q Consensus       211 ~~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~-----~~~-------g--~~i~ad~VV~aaG~~s--~~l~~~~g~~  270 (473)
                      .+.+++.|+++++++.+++|..+++.+. |+     ..+       |  .++.+|.||+|+|...  ..+++.+|+.
T Consensus       336 ~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~  412 (471)
T PRK12810        336 VSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVE  412 (471)
T ss_pred             HHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcc
Confidence            3445678999999999999975555443 32     112       1  4799999999999764  3466666654

>KOG3855|consensus

Probab=97.19  E-value=0.044  Score=52.24  Aligned_cols=56  Identities=9%  Similarity=0.010  Sum_probs=41.6

Q ss_pred             HHcCcEEEeCceEEEEEEc-------CC-eEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710         215 CELGGEIRLNQQVESFKEN-------PE-SVTISTKQGDHLESSYALVCAGLQADEMALKSGCSL  271 (473)
Q Consensus       215 ~~~Gv~i~~~~~V~~i~~~-------~~-~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~  271 (473)
                      +...++|+..++|..+...       ++ .+.+++.+|..+.+|.+|-|.|..+ ...+.++++.
T Consensus       164 ~~~nv~vi~~~k~~~~~~~~~l~~~~n~~~~~i~l~dg~~~~~~LLigAdg~Ns-~vR~~snid~  227 (481)
T KOG3855|consen  164 ESDNVTVINMAKVIDCTIPEYLIKNDNGMWFHITLTDGINFATDLLIGADGFNS-VVRKASNIDV  227 (481)
T ss_pred             hcCceeeecccceeeeccccccCCCCCcceEEEEeccCceeeeceeeccccccc-hhhhhcCCCc
Confidence            3468999999998887652       22 3458888888899999999998876 5666666664

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.18  E-value=0.0069  Score=55.68  Aligned_cols=33  Identities=21%  Similarity=0.382  Sum_probs=30.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ..|.|||||++|..+||+++++  |.+|.+.|-.+
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~~--Gv~V~L~EMRp   36 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAKR--GVPVILYEMRP   36 (439)
T ss_pred             CceEEEcccccccHHHHHHHHc--CCcEEEEEccc
Confidence            4599999999999999999999  99999999874

>KOG1800|consensus

Probab=97.15  E-value=0.0006  Score=63.65  Aligned_cols=39  Identities=28%  Similarity=0.317  Sum_probs=34.5

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL   94 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~   94 (473)
                      ....|+|||+|++|+.+|++|.++.++.+|.|+|+.+.+
T Consensus        19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP   57 (468)
T KOG1800|consen   19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP   57 (468)
T ss_pred             CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence            445899999999999999999997668999999999654

>PRK12831 putative oxidoreductase; Provisional

Probab=97.15  E-value=0.0045  Score=62.28  Aligned_cols=32  Identities=31%  Similarity=0.395  Sum_probs=29.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .+|+|||+|.+|+-+|..|++.  |.+|+++.+.
T Consensus       282 k~VvVIGgG~va~d~A~~l~r~--Ga~Vtlv~r~  313 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALRL--GAEVHIVYRR  313 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHHc--CCEEEEEeec
Confidence            4799999999999999999999  8999999986

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.06  E-value=0.0013  Score=60.75  Aligned_cols=33  Identities=33%  Similarity=0.350  Sum_probs=28.7

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      -.||+|||||-+|..+|..|+--  -.-|+++|=.
T Consensus       354 gK~VAVIGGGNSGvEAAIDLAGi--v~hVtllEF~  386 (520)
T COG3634         354 GKRVAVIGGGNSGVEAAIDLAGI--VEHVTLLEFA  386 (520)
T ss_pred             CceEEEECCCcchHHHHHhHHhh--hheeeeeecc
Confidence            46999999999999999999966  4579999865

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=97.03  E-value=0.0013  Score=65.87  Aligned_cols=34  Identities=18%  Similarity=0.234  Sum_probs=30.8

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ...+|+|||+|.+|+-+|..|++.  +.+|+++.+.
T Consensus       203 ~gk~VvVVG~G~Sg~diA~~L~~~--a~~V~l~~r~  236 (461)
T PLN02172        203 KNEVVVVIGNFASGADISRDIAKV--AKEVHIASRA  236 (461)
T ss_pred             CCCEEEEECCCcCHHHHHHHHHHh--CCeEEEEEee
Confidence            345799999999999999999998  8899999886

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.95  E-value=0.006  Score=57.93  Aligned_cols=38  Identities=18%  Similarity=0.327  Sum_probs=33.2

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL   94 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~   94 (473)
                      ..+|++.||-|+.-|+.|..|.+.. +.++..+||.+.+
T Consensus         4 ~~~DliGIG~GPfNL~LA~ll~e~~-~~~~lFLerkp~F   41 (436)
T COG3486           4 EVLDLIGIGIGPFNLSLAALLEEHS-GLKSLFLERKPDF   41 (436)
T ss_pred             cceeeEEEccCchHHHHHHHhcccc-CcceEEEecCCCC
Confidence            5689999999999999999999874 4889999998643

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=96.93  E-value=0.0064  Score=63.92  Aligned_cols=32  Identities=25%  Similarity=0.387  Sum_probs=28.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      ..|+|||+|.+|+-+|..|.+.  |. +|+|+.+.
T Consensus       324 k~VvVIGgG~~a~e~A~~l~~~--Ga~~Vtlv~r~  356 (652)
T PRK12814        324 KKVVVIGGGNTAIDAARTALRL--GAESVTILYRR  356 (652)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc--CCCeEEEeeec
Confidence            3699999999999999999988  65 69999876

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=96.83  E-value=0.015  Score=62.89  Aligned_cols=33  Identities=33%  Similarity=0.364  Sum_probs=27.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCC-CeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPK-MKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G-~~V~viE~~   91 (473)
                      .+|+|||||.+|+-+|..+.+.+ | .+|+++.++
T Consensus       669 KrVVVIGGGnVAmD~Ar~a~Rlg-GakeVTLVyRr  702 (1019)
T PRK09853        669 KHVVVVGGGNTAMDAARAALRVP-GVEKVTVVYRR  702 (1019)
T ss_pred             CEEEEECCChHHHHHHHHHHhcC-CCceEEEEEcc
Confidence            36999999999999998887763 3 489999986

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=96.75  E-value=0.015  Score=60.14  Aligned_cols=33  Identities=30%  Similarity=0.462  Sum_probs=30.2

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .+|+|||||.+|+.+|..|++.  |.+|+++++.+
T Consensus       144 ~~VvVIGgG~~g~E~A~~L~~~--g~~Vtli~~~~  176 (555)
T TIGR03143       144 MDVFVIGGGFAAAEEAVFLTRY--ASKVTVIVREP  176 (555)
T ss_pred             CEEEEECCCHHHHHHHHHHHcc--CCEEEEEEeCC
Confidence            3699999999999999999998  89999999873

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>KOG3851|consensus

Probab=96.70  E-value=0.016  Score=53.12  Aligned_cols=37  Identities=27%  Similarity=0.412  Sum_probs=32.8

Q ss_pred             CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ..++.|+|||||-.|++.|..+.++.+.-+|.|+|..
T Consensus        37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~   73 (446)
T KOG3851|consen   37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPA   73 (446)
T ss_pred             ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecch
Confidence            3689999999999999999999988666799999976

>KOG1238|consensus

Probab=96.63  E-value=0.0022  Score=64.56  Aligned_cols=40  Identities=35%  Similarity=0.552  Sum_probs=34.9

Q ss_pred             CCCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710          54 SPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL   94 (473)
Q Consensus        54 ~~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~   94 (473)
                      ....||.+|||||-+|+.+|..|++. |..+|+|+|++..+
T Consensus        54 ~~~~yDyIVVGgGtAGcvlAarLSEn-~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   54 LDSSYDYIVVGGGTAGCVLAARLSEN-PNWSVLLLEAGGDP   93 (623)
T ss_pred             cccCCCEEEECCCchhHHHHHhhccC-CCceEEEEecCCCC
Confidence            34689999999999999999999986 46899999998543

>KOG2495|consensus

Probab=96.48  E-value=0.013  Score=55.99  Aligned_cols=60  Identities=13%  Similarity=0.220  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCC--cEEEcCEEEEcCCcChHHHHHhc
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQG--DHLESSYALVCAGLQADEMALKS  267 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g--~~i~ad~VV~aaG~~s~~l~~~~  267 (473)
                      +.+...+.+.+.|+++.+++.|.++..+  .+.+.+.+|  .+|..-.+|.++|..+..+.+.+
T Consensus       275 l~~yae~~f~~~~I~~~~~t~Vk~V~~~--~I~~~~~~g~~~~iPYG~lVWatG~~~rp~~k~l  336 (491)
T KOG2495|consen  275 LVEYAENQFVRDGIDLDTGTMVKKVTEK--TIHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDL  336 (491)
T ss_pred             HHHHHHHHhhhccceeecccEEEeecCc--EEEEEcCCCceeeecceEEEecCCCCCchhhhhH
Confidence            4444556677789999999999888643  456666666  45777889999999876666544

>KOG1336|consensus

Probab=96.44  E-value=0.016  Score=56.20  Aligned_cols=44  Identities=20%  Similarity=0.253  Sum_probs=37.7

Q ss_pred             HHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCc
Q psy7710         213 EFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGL  258 (473)
Q Consensus       213 ~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~  258 (473)
                      ..++.|+++++++.|++++...+.  |.+.+|+.++.+++|+|||.
T Consensus       136 ~Yke~gIe~~~~t~v~~~D~~~K~--l~~~~Ge~~kys~LilATGs  179 (478)
T KOG1336|consen  136 FYKEKGIELILGTSVVKADLASKT--LVLGNGETLKYSKLIIATGS  179 (478)
T ss_pred             hHhhcCceEEEcceeEEeeccccE--EEeCCCceeecceEEEeecC
Confidence            456789999999999999887654  56677889999999999998

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=96.37  E-value=0.026  Score=60.61  Aligned_cols=32  Identities=31%  Similarity=0.432  Sum_probs=29.2

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCe-EEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMK-ICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~-V~viE~~   91 (473)
                      .+|+|||||.+|+-+|..+.+.  |.+ |+++++.
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~--Ga~~Vtlv~r~  603 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRL--GAERVTIVYRR  603 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHc--CCCeEEEeeec
Confidence            4799999999999999999998  776 9999986

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.35  E-value=0.027  Score=59.48  Aligned_cols=31  Identities=23%  Similarity=0.351  Sum_probs=27.6

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      +|+|||+|..|+-+|..+.+.  |. +|+++.+.
T Consensus       470 ~VvVIGgG~~a~d~A~~a~r~--ga~~Vt~i~~~  501 (654)
T PRK12769        470 NVVVLGGGDTAMDCVRTALRH--GASNVTCAYRR  501 (654)
T ss_pred             eEEEECCcHHHHHHHHHHHHc--CCCeEEEeEec
Confidence            699999999999999998888  65 79998876

>PLN02852 ferredoxin-NADP+ reductase

Probab=96.17  E-value=0.29  Score=49.30  Aligned_cols=36  Identities=25%  Similarity=0.292  Sum_probs=26.5

Q ss_pred             CCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecc
Q psy7710           8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKE   43 (473)
Q Consensus         8 ~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~   43 (473)
                      ...+++|||+|.+|..+|..+....++..+.++++.
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~   60 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERL   60 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecC
Confidence            346899999999999999988753345566555433

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.14  E-value=0.055  Score=54.61  Aligned_cols=32  Identities=22%  Similarity=0.241  Sum_probs=28.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      ..|+|||+|..|+.+|..+.+.  |. +|+|+++.
T Consensus       283 k~VvVIGgG~~a~d~A~~a~~~--Ga~~Vtvv~r~  315 (467)
T TIGR01318       283 KRVVVLGGGDTAMDCVRTAIRL--GAASVTCAYRR  315 (467)
T ss_pred             CEEEEECCcHHHHHHHHHHHHc--CCCeEEEEEec
Confidence            4699999999999999999988  74 79999986

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=96.11  E-value=0.05  Score=59.49  Aligned_cols=32  Identities=28%  Similarity=0.410  Sum_probs=29.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .+|+|||||.+|+-+|..+.+.  |.+|+++.+.
T Consensus       448 k~VvVIGGG~tA~D~A~ta~R~--Ga~Vtlv~rr  479 (944)
T PRK12779        448 KEVFVIGGGNTAMDAARTAKRL--GGNVTIVYRR  479 (944)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc--CCEEEEEEec
Confidence            4699999999999999999999  8899999876

>KOG0399|consensus

Probab=96.00  E-value=0.0075  Score=63.90  Aligned_cols=37  Identities=24%  Similarity=0.437  Sum_probs=34.1

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      -..|.|||+|++||++|-.|-+.  |..|+|+||.+++|
T Consensus      1785 g~~vaiigsgpaglaaadqlnk~--gh~v~vyer~dr~g 1821 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKA--GHTVTVYERSDRVG 1821 (2142)
T ss_pred             CcEEEEEccCchhhhHHHHHhhc--CcEEEEEEecCCcC
Confidence            36899999999999999999999  99999999997765

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=95.92  E-value=0.071  Score=53.28  Aligned_cols=33  Identities=27%  Similarity=0.363  Sum_probs=30.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .+|+|||+|.+|...|-+|++.  |.+|+++-|.+
T Consensus       176 KrV~VIG~GaSA~di~~~l~~~--ga~vt~~qRs~  208 (443)
T COG2072         176 KRVLVIGAGASAVDIAPELAEV--GASVTLSQRSP  208 (443)
T ss_pred             CeEEEECCCccHHHHHHHHHhc--CCeeEEEecCC
Confidence            4799999999999999999999  89999999974

>KOG2665|consensus

Probab=95.72  E-value=0.01  Score=54.20  Aligned_cols=46  Identities=54%  Similarity=0.833  Sum_probs=40.2

Q ss_pred             CCCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccccccccC
Q psy7710           6 SPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSS   51 (473)
Q Consensus         6 ~~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~   51 (473)
                      +..+||.+|||+|++|+|.|+.+..+.|+.++.+.+.+..++...+
T Consensus        45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqS   90 (453)
T KOG2665|consen   45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQS   90 (453)
T ss_pred             ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeec
Confidence            4577999999999999999999999999999999998887765443

>KOG1439|consensus

Probab=95.44  E-value=0.17  Score=48.14  Aligned_cols=44  Identities=20%  Similarity=0.395  Sum_probs=38.5

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGH  101 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~  101 (473)
                      ..+||+|+|-|..=+..+..|+..  |.+|+.+||++..|+.+.+.
T Consensus         3 eeyDvivlGTgl~ecilS~~Ls~~--gkkVLhiDrN~yYG~~sasl   46 (440)
T KOG1439|consen    3 EEYDVIVLGTGLTECILSGALSVD--GKKVLHIDRNDYYGGESASL   46 (440)
T ss_pred             CceeEEEEcCCchhheeeeeeeec--CcEEEEEeCCCCCCccccce
Confidence            459999999999999999999999  99999999998877665553

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=95.38  E-value=0.022  Score=48.12  Aligned_cols=31  Identities=29%  Similarity=0.388  Sum_probs=29.4

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      +|.|||||..|.++|..|+++  |.+|+++.+.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~--g~~V~l~~~~   31 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADN--GHEVTLWGRD   31 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHC--TEEEEEETSC
T ss_pred             CEEEECcCHHHHHHHHHHHHc--CCEEEEEecc
Confidence            489999999999999999999  8999999987

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK13984 putative oxidoreductase; Provisional

Probab=95.38  E-value=0.11  Score=54.33  Aligned_cols=22  Identities=36%  Similarity=0.554  Sum_probs=19.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHhc
Q psy7710          58 YDVVVVGGGIVGVATARELKLN   79 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~   79 (473)
                      .+|+|||||.+|+-+|..|++.
T Consensus       419 k~VvVIGGG~~g~e~A~~l~r~  440 (604)
T PRK13984        419 RSLVVIGGGNVAMDIARSMARL  440 (604)
T ss_pred             CcEEEECCchHHHHHHHHHHhc
Confidence            4799999999999999999876

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=95.34  E-value=0.074  Score=53.11  Aligned_cols=47  Identities=15%  Similarity=0.374  Sum_probs=37.7

Q ss_pred             HHHcCcEEEeCceEEEEEEcCCeEEEEcCC-CcEEE--cCEEEEcCCcCh
Q psy7710         214 FCELGGEIRLNQQVESFKENPESVTISTKQ-GDHLE--SSYALVCAGLQA  260 (473)
Q Consensus       214 ~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~-g~~i~--ad~VV~aaG~~s  260 (473)
                      +.+.|++++.+++|+++..+++.+.+.... +..++  +|+||+|+|...
T Consensus        54 ~~~~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p  103 (427)
T TIGR03385        54 IKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASP  103 (427)
T ss_pred             HHhcCCeEEecCEEEEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCC
Confidence            366799999999999998877777776543 34677  999999999854

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=95.23  E-value=0.028  Score=48.64  Aligned_cols=32  Identities=22%  Similarity=0.399  Sum_probs=27.8

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .|.|||+|..|...|..++..  |.+|+++|.++
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~   32 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSP   32 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSH
T ss_pred             CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECCh
Confidence            489999999999999999999  99999999873

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>KOG2755|consensus

Probab=95.10  E-value=0.019  Score=51.14  Aligned_cols=33  Identities=39%  Similarity=0.636  Sum_probs=30.1

Q ss_pred             EEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          60 VVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        60 VvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .+|||||++|.+||-.|++..|..+|+++-..+
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitass   34 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASS   34 (334)
T ss_pred             eEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence            689999999999999999998889999998763

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=95.04  E-value=0.15  Score=52.49  Aligned_cols=47  Identities=13%  Similarity=0.215  Sum_probs=39.8

Q ss_pred             HHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         212 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       212 ~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      ...+++|++++.+.+|+.|..++.  .|.++.|.++..|.+|+|||.+.
T Consensus        67 dwy~~~~i~L~~~~~v~~idr~~k--~V~t~~g~~~~YDkLilATGS~p  113 (793)
T COG1251          67 DWYEENGITLYTGEKVIQIDRANK--VVTTDAGRTVSYDKLIIATGSYP  113 (793)
T ss_pred             hhHHHcCcEEEcCCeeEEeccCcc--eEEccCCcEeecceeEEecCccc
Confidence            345778999999999999987664  46778888999999999999885

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=94.98  E-value=0.036  Score=46.40  Aligned_cols=30  Identities=23%  Similarity=0.498  Sum_probs=28.6

Q ss_pred             EEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          60 VVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        60 VvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      |+|+|+|..|+..|+.|++.  |.+|.++.+.
T Consensus         1 I~I~G~GaiG~~~a~~L~~~--g~~V~l~~r~   30 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQA--GHDVTLVSRS   30 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHT--TCEEEEEESH
T ss_pred             CEEECcCHHHHHHHHHHHHC--CCceEEEEcc
Confidence            68999999999999999998  9999999987

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=94.95  E-value=0.13  Score=51.01  Aligned_cols=43  Identities=21%  Similarity=0.377  Sum_probs=34.9

Q ss_pred             HHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         215 CELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       215 ~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      .+.++.++.++.|+++......+  .+.+| .+..|++|+|+|+..
T Consensus        64 ~~~~i~~~~~~~v~~id~~~~~v--~~~~g-~~~yd~LvlatGa~~  106 (415)
T COG0446          64 RATGIDVRTGTEVTSIDPENKVV--LLDDG-EIEYDYLVLATGARP  106 (415)
T ss_pred             HhhCCEEeeCCEEEEecCCCCEE--EECCC-cccccEEEEcCCCcc
Confidence            45689999999999998776554  45556 888999999999985

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=94.93  E-value=0.11  Score=49.32  Aligned_cols=34  Identities=41%  Similarity=0.523  Sum_probs=29.1

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      +|.|||+|.+|.++|+.|+.++....|+++|+..
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~   35 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK   35 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence            5999999999999999999982115899999864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG0029|consensus

Probab=94.92  E-value=0.47  Score=47.97  Aligned_cols=39  Identities=21%  Similarity=0.416  Sum_probs=30.5

Q ss_pred             CCCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccccc
Q psy7710           6 SPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEF   46 (473)
Q Consensus         6 ~~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~   46 (473)
                      +.+..+.+|||||++|.++|+.|...  +..+.+.+..+..
T Consensus        12 ~~~~~~VIVIGAGiaGLsAArqL~~~--G~~V~VLEARdRv   50 (501)
T KOG0029|consen   12 AGKKKKVIVIGAGLAGLSAARQLQDF--GFDVLVLEARDRV   50 (501)
T ss_pred             ccCCCcEEEECCcHHHHHHHHHHHHc--CCceEEEeccCCc
Confidence            45678999999999999999999855  4556667665544

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=94.90  E-value=0.032  Score=48.39  Aligned_cols=33  Identities=24%  Similarity=0.374  Sum_probs=26.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      +.|.|||.|..|+.+|..|+++  |.+|+.+|.+.
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~--G~~V~g~D~~~   33 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEK--GHQVIGVDIDE   33 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHT--TSEEEEE-S-H
T ss_pred             CEEEEECCCcchHHHHHHHHhC--CCEEEEEeCCh
Confidence            3699999999999999999999  99999999873

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>KOG1346|consensus

Probab=94.86  E-value=0.1  Score=49.75  Aligned_cols=61  Identities=15%  Similarity=0.208  Sum_probs=47.3

Q ss_pred             EecCCccceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         193 IHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       193 ~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      +|.|...+++|..+-.     +..-|+-+..+.+|.+|..+++.|  ..++|.+|..|..++|||...
T Consensus       251 ffepd~FfvspeDLp~-----~~nGGvAvl~G~kvvkid~~d~~V--~LnDG~~I~YdkcLIATG~~P  311 (659)
T KOG1346|consen  251 FFEPDGFFVSPEDLPK-----AVNGGVAVLRGRKVVKIDEEDKKV--ILNDGTTIGYDKCLIATGVRP  311 (659)
T ss_pred             EecCCcceeChhHCcc-----cccCceEEEeccceEEeecccCeE--EecCCcEeehhheeeecCcCc
Confidence            4556666777776543     345689999999999999877654  457888999999999999874

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.81  E-value=0.22  Score=52.44  Aligned_cols=32  Identities=22%  Similarity=0.222  Sum_probs=27.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCC-CeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPK-MKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G-~~V~viE~~   91 (473)
                      .+|+|||+|..|+-+|..+.+.  | .+|+++.+.
T Consensus       452 k~vvViGgG~~a~d~a~~~~~~--Ga~~Vt~v~rr  484 (639)
T PRK12809        452 KRVVVLGGGDTTMDCLRTSIRL--NAASVTCAYRR  484 (639)
T ss_pred             CeEEEECCcHHHHHHHHHHHHc--CCCeEEEeeec
Confidence            4699999999999999888888  6 479999876

>PRK14727 putative mercuric reductase; Provisional

Probab=94.79  E-value=0.051  Score=55.13  Aligned_cols=32  Identities=13%  Similarity=0.305  Sum_probs=29.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .+++|||+|.+|+.+|..|++.  |.+|+++++.
T Consensus       189 k~vvVIGgG~iG~E~A~~l~~~--G~~Vtlv~~~  220 (479)
T PRK14727        189 ASLTVIGSSVVAAEIAQAYARL--GSRVTILARS  220 (479)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc--CCEEEEEEcC
Confidence            4799999999999999999999  8999999875

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=94.66  E-value=0.037  Score=52.23  Aligned_cols=36  Identities=28%  Similarity=0.493  Sum_probs=29.2

Q ss_pred             CcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccccc
Q psy7710          10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEF   46 (473)
Q Consensus        10 ~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~   46 (473)
                      ||++|||+|++|+++|.+|+ ..++.++.++|+.+..
T Consensus         1 yD~iIVGsG~~G~v~A~rLs-~~~~~~VlvlEaG~~~   36 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLS-EAGNKKVLVLEAGPRY   36 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHT-TSTTS-EEEEESSBSC
T ss_pred             CCEEEECcCHHHHHHHHHHh-hCCCCcEEEEEccccC
Confidence            89999999999999999999 4567789898877653

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=94.63  E-value=0.044  Score=54.51  Aligned_cols=35  Identities=29%  Similarity=0.514  Sum_probs=32.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL   94 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~   94 (473)
                      ..++|||||++|+-.|..+++.  |.+|+|+|+.+.+
T Consensus       174 ~~lvIiGgG~IGlE~a~~~~~L--G~~VTiie~~~~i  208 (454)
T COG1249         174 KSLVIVGGGYIGLEFASVFAAL--GSKVTVVERGDRI  208 (454)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc--CCcEEEEecCCCC
Confidence            4699999999999999999999  9999999998754

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=94.54  E-value=0.059  Score=52.83  Aligned_cols=46  Identities=46%  Similarity=0.612  Sum_probs=40.2

Q ss_pred             CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccccccccCC
Q psy7710           7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSS   52 (473)
Q Consensus         7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~   52 (473)
                      +++||++|||||+.|++.|..|+...|..++.+++++......++.
T Consensus         1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~   46 (429)
T COG0579           1 MMDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSS   46 (429)
T ss_pred             CCceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcccccccc
Confidence            3689999999999999999999988888999999998877655544

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=94.53  E-value=0.2  Score=47.26  Aligned_cols=57  Identities=16%  Similarity=0.213  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHcCcEEEeCceEEEEEEcC--C-eEE--E-EcCCCcEEE--c-CEEEEcCCcC
Q psy7710         203 WGLVTRVMGEEFCELGGEIRLNQQVESFKENP--E-SVT--I-STKQGDHLE--S-SYALVCAGLQ  259 (473)
Q Consensus       203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~-~v~--v-~~~~g~~i~--a-d~VV~aaG~~  259 (473)
                      ...++.-|..+++++||.+..+++|++|..+.  + .+.  + ...+++.++  - |.|+++.|.-
T Consensus       226 YeSlvlPli~yL~~H~Vdf~~~~~Vedi~v~~t~gkkvA~aih~~~d~~~ieLt~dDlVfvTNgsi  291 (587)
T COG4716         226 YESLVLPLITYLKSHGVDFTYDQKVEDIDVDDTPGKKVAKAIHVLGDAETIELTPDDLVFVTNGSI  291 (587)
T ss_pred             HHHHHHHHHHHHHHcCCceEeccEEeeeeeccCcchhHHHHHHHhcCcceeecCCCceEEEeccee
Confidence            46678889999999999999999999998764  2 111  2 244444443  2 5788877754

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=94.50  E-value=0.084  Score=52.45  Aligned_cols=53  Identities=19%  Similarity=0.286  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEc-CCCcEEEcCEEEEcCCcC
Q psy7710         207 TRVMGEEFCELGGEIRLNQQVESFKENPESVTIST-KQGDHLESSYALVCAGLQ  259 (473)
Q Consensus       207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~-~~g~~i~ad~VV~aaG~~  259 (473)
                      .+.|.+.+++.|++|+++++|++|..+++++.+.. .+|+.+.||.||+|+...
T Consensus       200 ~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~  253 (419)
T TIGR03467       200 PEPARRWLDSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPR  253 (419)
T ss_pred             HHHHHHHHHHcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHH
Confidence            34577788888999999999999998887755332 355588999999998766

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=94.43  E-value=0.34  Score=53.63  Aligned_cols=32  Identities=25%  Similarity=0.250  Sum_probs=27.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      .+|+|||||.+|+-+|..+.+.  |. +|+++.+.
T Consensus       572 k~VvVIGgG~tA~D~A~~a~rl--Ga~~Vtiv~rr  604 (1006)
T PRK12775        572 KSVVVIGAGNTAMDCLRVAKRL--GAPTVRCVYRR  604 (1006)
T ss_pred             CEEEEECCcHHHHHHHHHHHHc--CCCEEEEEeec
Confidence            4799999999999999999988  66 47777764

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=94.13  E-value=0.071  Score=53.46  Aligned_cols=35  Identities=17%  Similarity=0.328  Sum_probs=31.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL   94 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~   94 (473)
                      .+|+|||+|.+|+.+|..|++.  |.+|+++|+.+.+
T Consensus       158 ~~vvIIGgG~~g~e~A~~l~~~--g~~Vtli~~~~~~  192 (438)
T PRK07251        158 ERLGIIGGGNIGLEFAGLYNKL--GSKVTVLDAASTI  192 (438)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCcc
Confidence            4699999999999999999998  8999999997544

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=94.06  E-value=0.15  Score=52.10  Aligned_cols=34  Identities=35%  Similarity=0.396  Sum_probs=29.5

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      +..+|+|||+|.+|.-+|.+|++.  ..+|.+.-|.
T Consensus       182 ~gKrVlVVG~g~Sg~DIa~el~~~--a~~v~~s~R~  215 (531)
T PF00743_consen  182 KGKRVLVVGGGNSGADIAVELSRV--AKKVYLSTRR  215 (531)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHTTT--SCCEEEECC-
T ss_pred             CCCEEEEEeCCHhHHHHHHHHHHh--cCCeEEEEec
Confidence            346899999999999999999998  7899988876

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=94.02  E-value=0.09  Score=53.07  Aligned_cols=47  Identities=28%  Similarity=0.241  Sum_probs=39.3

Q ss_pred             CCCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccccccccCC
Q psy7710           6 SPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSS   52 (473)
Q Consensus         6 ~~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~   52 (473)
                      .+..+|++|||||++|+++|..|+...|+.++.++|+.......++.
T Consensus         3 ~~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~sS~   49 (497)
T PRK13339          3 KSESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESSN   49 (497)
T ss_pred             CCccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhcCC
Confidence            35678999999999999999999988899999999994455555543

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=94.01  E-value=0.073  Score=47.83  Aligned_cols=32  Identities=28%  Similarity=0.668  Sum_probs=30.4

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      +++|||+|-.|.+.|..|.+.  |.+|+++|+.+
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~--g~~Vv~Id~d~   33 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEE--GHNVVLIDRDE   33 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhC--CCceEEEEcCH
Confidence            689999999999999999999  99999999984

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=93.96  E-value=0.069  Score=50.70  Aligned_cols=32  Identities=22%  Similarity=0.376  Sum_probs=30.0

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      +|.|||+|..|.+.|..|+++  |.+|+++|+.+
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~--G~~V~v~d~~~   35 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARA--GHEVRLWDADP   35 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHC--CCeeEEEeCCH
Confidence            699999999999999999999  89999999873

>KOG4405|consensus

Probab=93.95  E-value=0.06  Score=51.14  Aligned_cols=49  Identities=18%  Similarity=0.259  Sum_probs=41.7

Q ss_pred             CCCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcc
Q psy7710          54 SPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSG  104 (473)
Q Consensus        54 ~~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g  104 (473)
                      .+..+||||||.|+.-...|...++.  |.+|+-+|++...|+.-++.+..
T Consensus         5 lP~~fDvVViGTGlpESilAAAcSrs--G~sVLHlDsn~yYGg~waSfSms   53 (547)
T KOG4405|consen    5 LPEEFDVVVIGTGLPESILAAACSRS--GSSVLHLDSNEYYGGNWASFSMS   53 (547)
T ss_pred             CchhccEEEEcCCCcHHHHHHHhhhc--CCceEeccCccccCCcccceeec
Confidence            35789999999999999999999999  99999999998888765554433

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=93.72  E-value=0.081  Score=53.44  Aligned_cols=35  Identities=23%  Similarity=0.477  Sum_probs=31.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL   94 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~   94 (473)
                      .+|+|||+|.+|+.+|..|++.  |.+|+++|+.+.+
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~--g~~Vtli~~~~~~  205 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASL--GSKVTVIEMLDRI  205 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc--CCcEEEEEcCCCC
Confidence            4799999999999999999999  8999999998543

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR02053 MerA mercuric reductase

Probab=93.70  E-value=0.083  Score=53.38  Aligned_cols=35  Identities=23%  Similarity=0.503  Sum_probs=31.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL   94 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~   94 (473)
                      .+++|||+|.+|+.+|..|++.  |.+|+++++.+.+
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~--g~~Vtli~~~~~~  201 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARL--GSEVTILQRSDRL  201 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc--CCcEEEEEcCCcC
Confidence            5799999999999999999999  8999999998543

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=93.69  E-value=0.6  Score=48.49  Aligned_cols=52  Identities=13%  Similarity=0.179  Sum_probs=33.8

Q ss_pred             HHHcCcEEEeCceEEEEEEcCC-eEE-----EEc----C-------CC--cEEEcCEEEEcCCcCh-HHHHH
Q psy7710         214 FCELGGEIRLNQQVESFKENPE-SVT-----IST----K-------QG--DHLESSYALVCAGLQA-DEMAL  265 (473)
Q Consensus       214 ~~~~Gv~i~~~~~V~~i~~~~~-~v~-----v~~----~-------~g--~~i~ad~VV~aaG~~s-~~l~~  265 (473)
                      +.+.|+++++++.+.+|..+++ .+.     +..    .       .|  .++++|.||+|+|... ..++.
T Consensus       315 a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~  386 (564)
T PRK12771        315 ALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLE  386 (564)
T ss_pred             HHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhh
Confidence            4457899998888888875543 221     211    1       12  3789999999999764 34544

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=93.57  E-value=0.097  Score=49.55  Aligned_cols=32  Identities=19%  Similarity=0.294  Sum_probs=30.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ++|+|||+|..|...|..|++.  |.+|+++.|.
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~--G~~V~lv~r~   34 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARA--GLPVRLILRD   34 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhC--CCCeEEEEec
Confidence            4699999999999999999999  8999999996

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.57  E-value=0.088  Score=53.47  Aligned_cols=32  Identities=31%  Similarity=0.417  Sum_probs=29.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ..|+|||+|.+|+++|..|+++  |.+|+++|+.
T Consensus        17 ~~v~viG~G~~G~~~A~~L~~~--G~~V~~~d~~   48 (480)
T PRK01438         17 LRVVVAGLGVSGFAAADALLEL--GARVTVVDDG   48 (480)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCC
Confidence            4699999999999999999999  9999999976

>KOG2495|consensus

Probab=93.49  E-value=0.65  Score=44.83  Aligned_cols=36  Identities=19%  Similarity=0.289  Sum_probs=31.2

Q ss_pred             CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .+...|||+|+|-+|.+....|-..  -.+|+||...+
T Consensus        53 ~kKk~vVVLGsGW~a~S~lk~ldts--~YdV~vVSPRn   88 (491)
T KOG2495|consen   53 GKKKRVVVLGSGWGAISLLKKLDTS--LYDVTVVSPRN   88 (491)
T ss_pred             CCCceEEEEcCchHHHHHHHhcccc--ccceEEecccc
Confidence            3567899999999999999988877  78999998764

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=93.47  E-value=0.12  Score=49.14  Aligned_cols=34  Identities=12%  Similarity=0.208  Sum_probs=31.1

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ..+|+|||+|..|...|..|++.  |.+|+++.|++
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~--g~~V~~~~r~~   38 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARA--GFDVHFLLRSD   38 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHC--CCeEEEEEeCC
Confidence            35799999999999999999999  89999999873

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=93.39  E-value=0.1  Score=52.66  Aligned_cols=35  Identities=29%  Similarity=0.458  Sum_probs=31.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL   94 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~   94 (473)
                      .+++|||+|.+|+.+|..|++.  |.+|+++++.+.+
T Consensus       173 ~~vvVvGgG~~g~E~A~~l~~~--g~~Vtli~~~~~~  207 (462)
T PRK06416        173 KSLVVIGGGYIGVEFASAYASL--GAEVTIVEALPRI  207 (462)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc--CCeEEEEEcCCCc
Confidence            4799999999999999999999  8999999997543

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=93.34  E-value=2.2  Score=41.17  Aligned_cols=43  Identities=9%  Similarity=0.165  Sum_probs=34.1

Q ss_pred             cCcEEEeCceEEEEEEcCCe-EEEEc-----CCCcEEEcCEEEEcCCcC
Q psy7710         217 LGGEIRLNQQVESFKENPES-VTIST-----KQGDHLESSYALVCAGLQ  259 (473)
Q Consensus       217 ~Gv~i~~~~~V~~i~~~~~~-v~v~~-----~~g~~i~ad~VV~aaG~~  259 (473)
                      ..+.++.+++|.+++..+++ +.+.+     ++..++++|.||+|||..
T Consensus       291 ~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~  339 (436)
T COG3486         291 PDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYR  339 (436)
T ss_pred             CCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccc
Confidence            46899999999999988765 65443     233578999999999987

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=93.23  E-value=0.11  Score=40.21  Aligned_cols=34  Identities=35%  Similarity=0.400  Sum_probs=30.4

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      +...|+|||+|-.|..-+..|.+.  |.+|+|+.+.
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~--gA~v~vis~~   39 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEA--GAKVTVISPE   39 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCC--TBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEECCc
Confidence            346799999999999999999999  9999999986

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.16  E-value=0.11  Score=52.53  Aligned_cols=32  Identities=28%  Similarity=0.415  Sum_probs=29.9

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .|+|||.|.+|+++|..|+++  |.+|+++|+..
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~--G~~V~~~D~~~   33 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQ--GWEVVVSDRND   33 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHC--CCEEEEECCCC
Confidence            489999999999999999999  99999999874

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.15  E-value=0.15  Score=47.72  Aligned_cols=33  Identities=24%  Similarity=0.312  Sum_probs=30.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ..|.|||+|..|...|..++..  |.+|+++|+.+
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~   38 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARA--GVDVLVFETTE   38 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhC--CCEEEEEECCH
Confidence            3699999999999999999999  99999999874

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=93.12  E-value=0.12  Score=45.52  Aligned_cols=35  Identities=34%  Similarity=0.354  Sum_probs=29.3

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ...+|+|||+|.++.-+|+.|++.  |.+|+++-|.+
T Consensus       166 ~~k~V~VVG~G~SA~d~a~~l~~~--g~~V~~~~R~~  200 (203)
T PF13738_consen  166 KGKRVVVVGGGNSAVDIAYALAKA--GKSVTLVTRSP  200 (203)
T ss_dssp             TTSEEEEE--SHHHHHHHHHHTTT--CSEEEEEESS-
T ss_pred             CCCcEEEEcChHHHHHHHHHHHhh--CCEEEEEecCC
Confidence            346899999999999999999999  89999998874

...

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=93.12  E-value=0.22  Score=45.83  Aligned_cols=34  Identities=26%  Similarity=0.385  Sum_probs=31.1

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ...+|+|||+|++|..+|.-+...  |.+|+++|.+
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n  200 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGL--GADVTILDLN  200 (371)
T ss_pred             CCccEEEECCccccchHHHHHhcc--CCeeEEEecC
Confidence            456899999999999999999988  9999999987

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=93.10  E-value=0.15  Score=44.88  Aligned_cols=34  Identities=26%  Similarity=0.315  Sum_probs=30.8

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      ....|+|||+|..|..+|..|++.  |. +++++|.+
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~--Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARA--GIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHc--CCCEEEEECCC
Confidence            356799999999999999999999  77 79999987

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=93.07  E-value=0.12  Score=52.08  Aligned_cols=35  Identities=20%  Similarity=0.447  Sum_probs=31.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL   94 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~   94 (473)
                      .+++|||+|.+|+.+|..|++.  |.+|+++++.+.+
T Consensus       176 ~~v~IiGgG~~g~E~A~~l~~~--g~~Vtli~~~~~~  210 (461)
T PRK05249        176 RSLIIYGAGVIGCEYASIFAAL--GVKVTLINTRDRL  210 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCc
Confidence            4699999999999999999999  9999999998544

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.04  E-value=0.13  Score=48.23  Aligned_cols=32  Identities=19%  Similarity=0.406  Sum_probs=29.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ..|.|||+|..|...|..|+++  |.+|+++|+.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~--G~~V~l~d~~   35 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFH--GFDVTIYDIS   35 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCC
Confidence            3599999999999999999999  8999999986

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.97  E-value=0.14  Score=48.58  Aligned_cols=33  Identities=9%  Similarity=0.237  Sum_probs=30.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ..|.|||+|..|...|..++..  |++|+++|..+
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~a--G~~V~l~D~~~   40 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAH--GLDVVAWDPAP   40 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCH
Confidence            4599999999999999999999  99999999863

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=92.96  E-value=0.14  Score=51.84  Aligned_cols=41  Identities=24%  Similarity=0.353  Sum_probs=34.7

Q ss_pred             CcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccccccccc
Q psy7710          10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMS   50 (473)
Q Consensus        10 ~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~~~~~   50 (473)
                      +|++|||||++|+++|..|+...|+.++.+++++......+
T Consensus         1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~   41 (483)
T TIGR01320         1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAES   41 (483)
T ss_pred             CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhh
Confidence            69999999999999999999877899999999876544333

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=92.87  E-value=0.18  Score=49.78  Aligned_cols=37  Identities=46%  Similarity=0.927  Sum_probs=32.5

Q ss_pred             CCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccc
Q psy7710           9 LYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE   45 (473)
Q Consensus         9 ~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~   45 (473)
                      ++|.+|||+|++|+++|..|+...|+.++.++++...
T Consensus         2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~   38 (393)
T PRK11728          2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESG   38 (393)
T ss_pred             CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            5899999999999999999997777888988887653

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=92.84  E-value=0.2  Score=41.01  Aligned_cols=34  Identities=29%  Similarity=0.301  Sum_probs=30.3

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCe-EEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMK-ICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~-V~viE~~   91 (473)
                      ....++|||+|-+|-.+++.|++.  |.+ |+|+.|.
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~--g~~~i~i~nRt   45 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAAL--GAKEITIVNRT   45 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHT--TSSEEEEEESS
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHc--CCCEEEEEECC
Confidence            456799999999999999999999  665 9999986

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.81  E-value=0.14  Score=48.14  Aligned_cols=32  Identities=28%  Similarity=0.522  Sum_probs=29.8

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .|.|||+|..|...|..|+++  |.+|+++|+++
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~   34 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVS--GFQTTLVDIKQ   34 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhC--CCcEEEEeCCH
Confidence            499999999999999999999  89999999873

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=92.79  E-value=0.39  Score=48.43  Aligned_cols=73  Identities=15%  Similarity=0.169  Sum_probs=48.5

Q ss_pred             CCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccccccccCCCCCCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEE
Q psy7710           9 LYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLV   88 (473)
Q Consensus         9 ~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~vi   88 (473)
                      .+|.+---+.++|..+....+...+...........         .....+|+|+|+|.+|+.++..+...  |.+|+++
T Consensus       126 ~~d~lssma~IAGy~Av~~aa~~~~~~~~g~~taaG---------~~pg~kVlViGaG~iGL~Ai~~Ak~l--GA~V~a~  194 (509)
T PRK09424        126 SLDALSSMANIAGYRAVIEAAHEFGRFFTGQITAAG---------KVPPAKVLVIGAGVAGLAAIGAAGSL--GAIVRAF  194 (509)
T ss_pred             CcccccchhhhhHHHHHHHHHHHhcccCCCceeccC---------CcCCCEEEEECCcHHHHHHHHHHHHC--CCEEEEE
Confidence            456676677888876655555443322111111111         01245799999999999999999888  8899999


Q ss_pred             eccC
Q psy7710          89 EKEK   92 (473)
Q Consensus        89 E~~~   92 (473)
                      |.++
T Consensus       195 D~~~  198 (509)
T PRK09424        195 DTRP  198 (509)
T ss_pred             eCCH
Confidence            9873

>PRK02106 choline dehydrogenase; Validated

Probab=92.79  E-value=0.16  Score=52.61  Aligned_cols=38  Identities=26%  Similarity=0.459  Sum_probs=32.7

Q ss_pred             CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccc
Q psy7710           7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE   45 (473)
Q Consensus         7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~   45 (473)
                      ...||++|||+|++|+.+|.+|+. .++.++.++|+.+.
T Consensus         3 ~~~~D~iIVG~G~aG~vvA~rLae-~~g~~VlvlEaG~~   40 (560)
T PRK02106          3 TMEYDYIIIGAGSAGCVLANRLSE-DPDVSVLLLEAGGP   40 (560)
T ss_pred             CCcCcEEEECCcHHHHHHHHHHHh-CCCCeEEEecCCCc
Confidence            345999999999999999999995 47889989988853

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=92.69  E-value=0.17  Score=44.66  Aligned_cols=32  Identities=34%  Similarity=0.469  Sum_probs=29.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ..|+|||||.+|...+..|.+.  |.+|+|++..
T Consensus        10 k~vlVvGgG~va~rk~~~Ll~~--ga~VtVvsp~   41 (205)
T TIGR01470        10 RAVLVVGGGDVALRKARLLLKA--GAQLRVIAEE   41 (205)
T ss_pred             CeEEEECcCHHHHHHHHHHHHC--CCEEEEEcCC
Confidence            4799999999999999999999  9999999875

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=92.68  E-value=0.19  Score=47.36  Aligned_cols=32  Identities=25%  Similarity=0.308  Sum_probs=30.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ..|.|||+|..|...|..|+++  |.+|+++|+.
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~--G~~V~l~d~~   36 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALA--GYDVLLNDVS   36 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCC
Confidence            4699999999999999999999  8999999986

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=92.56  E-value=0.18  Score=50.64  Aligned_cols=35  Identities=23%  Similarity=0.485  Sum_probs=30.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ++|.|||.|..|+.+|..|+++++|.+|+.+|.+.
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~   36 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV   36 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence            46999999999999999999985568999999763

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=92.56  E-value=0.25  Score=40.71  Aligned_cols=33  Identities=27%  Similarity=0.341  Sum_probs=29.8

Q ss_pred             cEEEEcC-ChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          59 DVVVVGG-GIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        59 dVvIIGa-Gi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      +|.|||+ |-.|.++|+.|...+...++.++|..
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~   35 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN   35 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccC
Confidence            6999999 99999999999998555689999987

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=92.53  E-value=0.21  Score=42.63  Aligned_cols=34  Identities=26%  Similarity=0.285  Sum_probs=29.2

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ....|+|+|+|.+|..+|..|...  |.+|+++|..
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~l--Ga~v~~~d~~   52 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGL--GAEVVVPDER   52 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHT--T-EEEEEESS
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHC--CCEEEeccCC
Confidence            347899999999999999999999  9999999986

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=92.49  E-value=1.2  Score=39.30  Aligned_cols=33  Identities=36%  Similarity=0.432  Sum_probs=30.3

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ...|+|||||-.|+.=|..|.+.  |.+|+|+-..
T Consensus        12 ~k~VlvvGgG~va~rKa~~ll~~--ga~v~Vvs~~   44 (210)
T COG1648          12 GKKVLVVGGGSVALRKARLLLKA--GADVTVVSPE   44 (210)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc--CCEEEEEcCC
Confidence            45799999999999999999999  9999999876

>PLN02785 Protein HOTHEAD

Probab=92.43  E-value=0.19  Score=52.15  Aligned_cols=36  Identities=33%  Similarity=0.558  Sum_probs=30.9

Q ss_pred             CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccc
Q psy7710           7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE   45 (473)
Q Consensus         7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~   45 (473)
                      ...|||+|||+|++|++.|.+|+.   +.++.++|+...
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~Ls~---~~~VLllE~G~~   88 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATLSQ---NFSVLLLERGGV   88 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHHhc---CCcEEEEecCCC
Confidence            456999999999999999999995   478888888753

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=92.39  E-value=0.23  Score=41.74  Aligned_cols=33  Identities=30%  Similarity=0.362  Sum_probs=29.5

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ...|+|||||-.|..-|..|.+.  |.+|+||...
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~~--ga~V~VIsp~   45 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKDT--GAFVTVVSPE   45 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCc
Confidence            45799999999999999999999  9999999643

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=92.36  E-value=0.2  Score=50.80  Aligned_cols=41  Identities=24%  Similarity=0.364  Sum_probs=35.3

Q ss_pred             CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccccc
Q psy7710           7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFF   47 (473)
Q Consensus         7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~~   47 (473)
                      ..++|++|||+|+.|++.|..|+...|+.++.+++++....
T Consensus         3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a   43 (494)
T PRK05257          3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVA   43 (494)
T ss_pred             CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchh
Confidence            46789999999999999999999777888998999876543

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=92.30  E-value=0.19  Score=48.07  Aligned_cols=32  Identities=25%  Similarity=0.392  Sum_probs=30.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ++|.|||.|..||++|..|++.  |.+|+.+|..
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~--GHeVv~vDid   32 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAEL--GHEVVCVDID   32 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHc--CCeEEEEeCC
Confidence            3689999999999999999999  9999999987

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=92.27  E-value=0.23  Score=43.74  Aligned_cols=33  Identities=33%  Similarity=0.351  Sum_probs=30.0

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ...|+|||||-.|...|..|.+.  |.+|+|+++.
T Consensus        10 ~k~vLVIGgG~va~~ka~~Ll~~--ga~V~VIs~~   42 (202)
T PRK06718         10 NKRVVIVGGGKVAGRRAITLLKY--GAHIVVISPE   42 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEcCC
Confidence            45799999999999999999999  8999999864

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=92.13  E-value=0.18  Score=47.71  Aligned_cols=31  Identities=23%  Similarity=0.333  Sum_probs=28.9

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      +|+|||+|..|...|..|++.  |.+|+++++.
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~--g~~V~~~~r~   32 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEA--GRDVTFLVRP   32 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHC--CCceEEEecH
Confidence            599999999999999999999  8999999983

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=92.11  E-value=0.21  Score=47.21  Aligned_cols=32  Identities=28%  Similarity=0.504  Sum_probs=28.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      .+|.|||+|..|..+|+.|+.+  |. +|+++|..
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~--g~~~VvlvDi~   34 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEK--ELADLVLLDVV   34 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHc--CCCeEEEEeCC
Confidence            4699999999999999999998  54 89999985

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=91.99  E-value=0.21  Score=46.94  Aligned_cols=32  Identities=22%  Similarity=0.411  Sum_probs=29.8

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .|.|||+|..|...|..|+++  |.+|+++|+.+
T Consensus         5 ~I~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~   36 (291)
T PRK06035          5 VIGVVGSGVMGQGIAQVFART--GYDVTIVDVSE   36 (291)
T ss_pred             EEEEECccHHHHHHHHHHHhc--CCeEEEEeCCH
Confidence            599999999999999999999  89999999873

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=91.99  E-value=0.29  Score=46.15  Aligned_cols=41  Identities=22%  Similarity=0.443  Sum_probs=36.5

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQ   98 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~   98 (473)
                      ..+||+|+|.|+.-+..+..|+-.  |.+|+.||+++..|+..
T Consensus         5 ~~yDvii~GTgl~esils~~Ls~~--~k~VlhiD~Nd~YG~~~   45 (434)
T COG5044           5 TLYDVIILGTGLRESILSAALSWD--GKNVLHIDKNDYYGSTS   45 (434)
T ss_pred             ccccEEEecccHHHHHHHHHhhhc--CceEEEEeCCCccCccc
Confidence            479999999999999999999999  89999999997766543

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=91.94  E-value=0.21  Score=48.14  Aligned_cols=32  Identities=19%  Similarity=0.378  Sum_probs=29.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .+|.|||+|..|...|..|+++  |.+|+++++.
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~--G~~V~~~~r~   34 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAA--GADVTLIGRA   34 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhc--CCcEEEEecH
Confidence            4699999999999999999999  8999999986

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=91.87  E-value=0.22  Score=47.13  Aligned_cols=31  Identities=19%  Similarity=0.402  Sum_probs=29.1

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      +|+|||+|..|...|..|++.  |.+|+++++.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~--g~~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQA--GHDVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhC--CCeEEEEECC
Confidence            599999999999999999999  8999999985

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=91.80  E-value=0.23  Score=49.78  Aligned_cols=35  Identities=23%  Similarity=0.343  Sum_probs=31.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL   94 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~   94 (473)
                      .+|+|||+|.+|+.+|..|++.  |.+|+++++.+.+
T Consensus       159 ~~v~ViGgG~~g~E~A~~l~~~--g~~Vtli~~~~~~  193 (441)
T PRK08010        159 GHLGILGGGYIGVEFASMFANF--GSKVTILEAASLF  193 (441)
T ss_pred             CeEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCC
Confidence            3699999999999999999999  9999999997543

>PRK06116 glutathione reductase; Validated

Probab=91.73  E-value=0.24  Score=49.90  Aligned_cols=34  Identities=26%  Similarity=0.237  Sum_probs=31.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKE   93 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~   93 (473)
                      .+|+|||+|.+|+.+|..|++.  |.+|+++++++.
T Consensus       168 ~~vvViGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~  201 (450)
T PRK06116        168 KRVAVVGAGYIAVEFAGVLNGL--GSETHLFVRGDA  201 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCC
Confidence            4699999999999999999999  899999998753

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=91.71  E-value=0.31  Score=39.86  Aligned_cols=35  Identities=31%  Similarity=0.497  Sum_probs=30.3

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEeccCcc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKEKEL   94 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~~~~   94 (473)
                      +..|+|||+|-.|..+|..|++.  |. +++|+|.+ .+
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~--Gv~~i~lvD~d-~v   37 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARS--GVGKITLVDDD-IV   37 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHH--TTSEEEEEESS-BB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHh--CCCceeecCCc-ce
Confidence            35799999999999999999999  65 89999987 44

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.54  E-value=0.24  Score=46.35  Aligned_cols=32  Identities=19%  Similarity=0.389  Sum_probs=29.7

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      +|.|||+|..|...|..|+++  |.+|+++|..+
T Consensus         5 kI~VIG~G~mG~~ia~~la~~--g~~V~~~d~~~   36 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVA--GYDVVMVDISD   36 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHC--CCceEEEeCCH
Confidence            599999999999999999999  89999999863

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.54  E-value=0.26  Score=49.65  Aligned_cols=33  Identities=36%  Similarity=0.477  Sum_probs=30.7

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ...|+|||+|.+|+.+|..|+++  |.+|+++|+.
T Consensus         5 ~k~v~iiG~g~~G~~~A~~l~~~--G~~V~~~d~~   37 (450)
T PRK14106          5 GKKVLVVGAGVSGLALAKFLKKL--GAKVILTDEK   37 (450)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCC
Confidence            35699999999999999999999  9999999986

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=91.50  E-value=0.27  Score=47.57  Aligned_cols=32  Identities=25%  Similarity=0.498  Sum_probs=29.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCC-CeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPK-MKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G-~~V~viE~~   91 (473)
                      .+|+|||+|-+|.++|..|+++  + .+|++.+|.
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~--~d~~V~iAdRs   34 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQN--GDGEVTIADRS   34 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhC--CCceEEEEeCC
Confidence            4799999999999999999999  5 899999997

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=91.34  E-value=0.31  Score=46.77  Aligned_cols=34  Identities=26%  Similarity=0.508  Sum_probs=30.9

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      ....|+|||+|-.|..+|..|++.  |. +++++|.+
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~a--Gvg~i~lvD~D   57 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRA--GVGKVTIVDRD   57 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCC
Confidence            356799999999999999999999  66 99999997

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=91.26  E-value=0.37  Score=40.99  Aligned_cols=34  Identities=29%  Similarity=0.247  Sum_probs=30.0

Q ss_pred             CcccEEEEcCCh-HHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          56 ALYDVVVVGGGI-VGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi-~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ...+|+|||+|- +|..+|..|.++  |.+|+++.|.
T Consensus        43 ~gk~vlViG~G~~~G~~~a~~L~~~--g~~V~v~~r~   77 (168)
T cd01080          43 AGKKVVVVGRSNIVGKPLAALLLNR--NATVTVCHSK   77 (168)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhC--CCEEEEEECC
Confidence            457899999996 699999999998  8899999985

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=91.25  E-value=0.58  Score=43.44  Aligned_cols=35  Identities=26%  Similarity=0.489  Sum_probs=27.5

Q ss_pred             CCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccc
Q psy7710           9 LYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE   45 (473)
Q Consensus         9 ~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~   45 (473)
                      |||++|||+|++|++.|..++..  +.++.++++.+.
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~--gk~VLIvekR~H   35 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQL--GKRVLIVEKRNH   35 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHc--CCEEEEEecccc
Confidence            68999999999999999966643  456777776654

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=91.22  E-value=0.34  Score=46.49  Aligned_cols=32  Identities=25%  Similarity=0.275  Sum_probs=30.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ..|.|||+|..|...|..|++.  |.+|+++++.
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~--G~~V~~~~r~   36 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASK--GVPVRLWARR   36 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHC--CCeEEEEeCC
Confidence            4699999999999999999999  8999999986

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=91.22  E-value=0.39  Score=37.91  Aligned_cols=31  Identities=26%  Similarity=0.577  Sum_probs=27.9

Q ss_pred             EEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          60 VVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        60 VvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      |+|+|.|-.|..++..|.+.  +.+|+++|+++
T Consensus         1 vvI~G~g~~~~~i~~~L~~~--~~~vvvid~d~   31 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEG--GIDVVVIDRDP   31 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHT--TSEEEEEESSH
T ss_pred             eEEEcCCHHHHHHHHHHHhC--CCEEEEEECCc
Confidence            78999999999999999997  78999999984

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=91.22  E-value=0.34  Score=45.64  Aligned_cols=32  Identities=28%  Similarity=0.411  Sum_probs=29.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ..|.|||+|..|...|..|+..  |.+|+++|+.
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~--G~~V~~~d~~   36 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAA--GMDVWLLDSD   36 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCC
Confidence            3599999999999999999999  8999999986

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=91.18  E-value=0.35  Score=44.44  Aligned_cols=34  Identities=32%  Similarity=0.305  Sum_probs=30.8

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCC-CeEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPK-MKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G-~~V~viE~~   91 (473)
                      ....|+|||.|-.|..+|..|++.  | .+++|+|.+
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~--GVg~itLiD~D   63 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALART--GIGAITLIDMD   63 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHc--CCCEEEEEeCC
Confidence            356799999999999999999999  6 689999987

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=91.11  E-value=0.39  Score=48.63  Aligned_cols=40  Identities=35%  Similarity=0.598  Sum_probs=33.5

Q ss_pred             CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccccc
Q psy7710           7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEF   46 (473)
Q Consensus         7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~   46 (473)
                      ..+||++|||||+.|+++|..|+...|..++.+++++...
T Consensus        43 ~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~   82 (497)
T PTZ00383         43 SDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDF   82 (497)
T ss_pred             CCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcch
Confidence            3569999999999999999999966666788888887543

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.04  E-value=0.36  Score=45.90  Aligned_cols=32  Identities=16%  Similarity=0.422  Sum_probs=29.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .+|.|||+|..|.+.|..|++.  |.+|+++|+.
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~--g~~V~~~d~~   36 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARK--GLQVVLIDVM   36 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhC--CCeEEEEECC
Confidence            4699999999999999999998  8999999986

>TIGR00518 alaDH alanine dehydrogenase

Probab=91.00  E-value=0.34  Score=47.19  Aligned_cols=33  Identities=24%  Similarity=0.440  Sum_probs=30.3

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ..+|+|||+|.+|+.+|..|...  |.+|+++++.
T Consensus       167 ~~~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~  199 (370)
T TIGR00518       167 PGDVTIIGGGVVGTNAAKMANGL--GATVTILDIN  199 (370)
T ss_pred             CceEEEEcCCHHHHHHHHHHHHC--CCeEEEEECC
Confidence            45699999999999999999999  8899999986

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK13748 putative mercuric reductase; Provisional

Probab=90.98  E-value=0.28  Score=50.92  Aligned_cols=32  Identities=16%  Similarity=0.329  Sum_probs=29.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .+++|||+|.+|+.+|..|++.  |.+|+|+++.
T Consensus       271 ~~vvViGgG~ig~E~A~~l~~~--g~~Vtli~~~  302 (561)
T PRK13748        271 ERLAVIGSSVVALELAQAFARL--GSKVTILARS  302 (561)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc--CCEEEEEecC
Confidence            4699999999999999999999  8999999985

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=90.98  E-value=0.31  Score=48.13  Aligned_cols=37  Identities=35%  Similarity=0.522  Sum_probs=31.0

Q ss_pred             CCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccccc
Q psy7710           8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEF   46 (473)
Q Consensus         8 ~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~   46 (473)
                      .+||.+|||+|.||.++|..++..  +.++.++++....
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~--G~~VlvlEk~~~~   38 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKA--GLDVLVLEKGSEP   38 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHc--CCeEEEEecCCCC
Confidence            579999999999999999999965  3788888876543

>PTZ00052 thioredoxin reductase; Provisional

Probab=90.98  E-value=0.27  Score=50.14  Aligned_cols=31  Identities=19%  Similarity=0.352  Sum_probs=29.3

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      +++|||+|.+|+.+|..|++.  |.+|+|+++.
T Consensus       184 ~vvIIGgG~iG~E~A~~l~~~--G~~Vtli~~~  214 (499)
T PTZ00052        184 KTLIVGASYIGLETAGFLNEL--GFDVTVAVRS  214 (499)
T ss_pred             eEEEECCCHHHHHHHHHHHHc--CCcEEEEEcC
Confidence            699999999999999999999  8999999875

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=90.93  E-value=0.44  Score=45.34  Aligned_cols=35  Identities=20%  Similarity=0.351  Sum_probs=30.6

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEeccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKEK   92 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~~   92 (473)
                      +..+|+|||+|..|.++|+.++..  |+ +|+++|..+
T Consensus         5 ~~~KI~IIGaG~vG~~ia~~la~~--gl~~i~LvDi~~   40 (321)
T PTZ00082          5 KRRKISLIGSGNIGGVMAYLIVLK--NLGDVVLFDIVK   40 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC--CCCeEEEEeCCC
Confidence            346899999999999999999988  64 899999874

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=90.80  E-value=0.43  Score=47.89  Aligned_cols=37  Identities=30%  Similarity=0.462  Sum_probs=30.5

Q ss_pred             CCCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710           6 SPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK   44 (473)
Q Consensus         6 ~~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~   44 (473)
                      +..+||.+|||+|.+|+++|..++..  +.++.++++..
T Consensus        36 ~~~~~DViIVGaGPAG~~aA~~LA~~--G~~VlllEr~~   72 (450)
T PLN00093         36 SGRKLRVAVIGGGPAGACAAETLAKG--GIETFLIERKL   72 (450)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhC--CCcEEEEecCC
Confidence            45679999999999999999988843  67888887653

>PRK14694 putative mercuric reductase; Provisional

Probab=90.68  E-value=0.32  Score=49.17  Aligned_cols=32  Identities=13%  Similarity=0.332  Sum_probs=29.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .+++|||+|.+|+.+|..|++.  |.+|+++++.
T Consensus       179 ~~vvViG~G~~G~E~A~~l~~~--g~~Vtlv~~~  210 (468)
T PRK14694        179 ERLLVIGASVVALELAQAFARL--GSRVTVLARS  210 (468)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc--CCeEEEEECC
Confidence            4799999999999999999999  8999999975

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=90.64  E-value=0.38  Score=46.13  Aligned_cols=34  Identities=26%  Similarity=0.505  Sum_probs=30.7

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      ....|+|||+|-.|..+|..|++.  |. +++|+|.+
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~a--Gvg~i~lvD~D   57 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRA--GIGKLTIADRD   57 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCC
Confidence            346799999999999999999999  75 89999997

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=90.49  E-value=0.37  Score=46.15  Aligned_cols=31  Identities=26%  Similarity=0.453  Sum_probs=29.2

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      +|.|||+|..|.+.|..|+++  |.+|+++.+.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~--g~~V~l~~r~   32 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSK--KISVNLWGRN   32 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHC--CCeEEEEecC
Confidence            589999999999999999999  8999999986

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=90.36  E-value=0.46  Score=41.91  Aligned_cols=34  Identities=24%  Similarity=0.357  Sum_probs=30.8

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      ....|+|||.|-.|..+|..|++.  |. +++++|.+
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~--Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGA--GVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHc--CCCeEEEecCC
Confidence            456799999999999999999999  65 89999987

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=90.31  E-value=0.38  Score=49.45  Aligned_cols=37  Identities=27%  Similarity=0.389  Sum_probs=32.7

Q ss_pred             CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccc
Q psy7710           7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE   45 (473)
Q Consensus         7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~   45 (473)
                      ...||++|||+|.+|++.|.+|+  .++.++++.|....
T Consensus         5 ~~~~D~vIVGsG~aG~~lA~rLs--~~g~~VllLEaG~~   41 (542)
T COG2303           5 KMEYDYVIVGSGSAGSVLAARLS--DAGLSVLVLEAGGP   41 (542)
T ss_pred             cCCCCEEEECCCchhHHHHHHhc--CCCCeEEEEeCCCC
Confidence            46799999999999999999999  57899999987754

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=90.27  E-value=0.38  Score=47.56  Aligned_cols=36  Identities=36%  Similarity=0.584  Sum_probs=30.6

Q ss_pred             CCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710           9 LYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK   44 (473)
Q Consensus         9 ~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~   44 (473)
                      |||.+|||+|++|.++|..++...++.++.++++.+
T Consensus         1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~   36 (403)
T PRK07333          1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP   36 (403)
T ss_pred             CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence            689999999999999999998654567888888765

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=90.22  E-value=0.45  Score=45.17  Aligned_cols=33  Identities=15%  Similarity=0.231  Sum_probs=30.5

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ..+|.|||+|..|.+.|..|+++  |.+|+++++.
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~--G~~V~~~~r~   36 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASAN--GHRVRVWSRR   36 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHC--CCEEEEEeCC
Confidence            35699999999999999999999  8999999986

>KOG2304|consensus

Probab=90.18  E-value=0.35  Score=42.28  Aligned_cols=35  Identities=23%  Similarity=0.460  Sum_probs=31.6

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ....|.|||+|..|.-.|.-.+..  |++|.++|++.
T Consensus        10 ~~~~V~ivGaG~MGSGIAQv~a~s--g~~V~l~d~~~   44 (298)
T KOG2304|consen   10 EIKNVAIVGAGQMGSGIAQVAATS--GLNVWLVDANE   44 (298)
T ss_pred             cccceEEEcccccchhHHHHHHhc--CCceEEecCCH
Confidence            446799999999999999999999  99999999873

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=90.15  E-value=0.41  Score=46.78  Aligned_cols=37  Identities=22%  Similarity=0.345  Sum_probs=30.5

Q ss_pred             CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccc
Q psy7710           7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE   45 (473)
Q Consensus         7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~   45 (473)
                      +++||++|||+|++|+++|..|+..  +.++.++++...
T Consensus         1 ~~~~dv~IIGgGi~G~s~A~~L~~~--g~~V~lie~~~~   37 (376)
T PRK11259          1 TMRYDVIVIGLGSMGSAAGYYLARR--GLRVLGLDRFMP   37 (376)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHC--CCeEEEEecccC
Confidence            3579999999999999999999854  567878876643

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=90.14  E-value=0.46  Score=40.76  Aligned_cols=31  Identities=26%  Similarity=0.326  Sum_probs=28.4

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      .|+|||+|..|..+|..|++.  |. +++++|.+
T Consensus         1 ~VlViG~GglGs~ia~~La~~--Gvg~i~lvD~D   32 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARS--GVGNLKLVDFD   32 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHc--CCCeEEEEeCC
Confidence            489999999999999999999  66 69999987

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK04148 hypothetical protein; Provisional

Probab=90.10  E-value=0.35  Score=39.13  Aligned_cols=32  Identities=19%  Similarity=0.330  Sum_probs=29.2

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ..+++||.| .|.+.|..|++.  |.+|+.+|.++
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~--G~~ViaIDi~~   49 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKES--GFDVIVIDINE   49 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHC--CCEEEEEECCH
Confidence            469999999 999999999999  99999999874

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=89.97  E-value=0.45  Score=45.47  Aligned_cols=31  Identities=29%  Similarity=0.396  Sum_probs=29.4

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      +|.|||+|..|...|..|++.  |.+|+++++.
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~--g~~V~~~~r~   33 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARN--GHDVTLWARD   33 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhC--CCEEEEEECC
Confidence            699999999999999999999  8999999986

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=89.92  E-value=0.87  Score=45.93  Aligned_cols=72  Identities=15%  Similarity=0.178  Sum_probs=45.9

Q ss_pred             CCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccccccccCCCCCCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEE
Q psy7710           9 LYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLV   88 (473)
Q Consensus         9 ~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~vi   88 (473)
                      .+|.+---+-++|..+....+...+.......+...         ......|+|+|+|.+|+.++..+...  |.+|+++
T Consensus       125 ~~d~lssma~iAGy~Avi~Aa~~lgr~~~g~~taag---------~vp~akVlViGaG~iGl~Aa~~ak~l--GA~V~v~  193 (511)
T TIGR00561       125 KLDALSSMANIAGYRAIIEAAHEFGRFFTGQITAAG---------KVPPAKVLVIGAGVAGLAAIGAANSL--GAIVRAF  193 (511)
T ss_pred             ccCcchhhHHHHHHHHHHHHHHHhhhhcCCceecCC---------CCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEE
Confidence            345555555677776655554333221111111110         11246799999999999999999998  8899999


Q ss_pred             ecc
Q psy7710          89 EKE   91 (473)
Q Consensus        89 E~~   91 (473)
                      |.+
T Consensus       194 d~~  196 (511)
T TIGR00561       194 DTR  196 (511)
T ss_pred             eCC
Confidence            987

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=89.88  E-value=0.39  Score=47.62  Aligned_cols=32  Identities=25%  Similarity=0.313  Sum_probs=29.8

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      +|.|||.|..|+.+|..|+++  |.+|+++|+.+
T Consensus         2 kI~vIGlG~~G~~lA~~La~~--G~~V~~~d~~~   33 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADL--GHEVTGVDIDQ   33 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhc--CCeEEEEECCH
Confidence            589999999999999999999  89999999874

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=89.80  E-value=0.46  Score=47.07  Aligned_cols=33  Identities=21%  Similarity=0.360  Sum_probs=30.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ..|.|||.|..|+.+|..|+++  |.+|+++|+++
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~--G~~V~~~D~~~   36 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASR--QKQVIGVDINQ   36 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhC--CCEEEEEeCCH
Confidence            4699999999999999999999  89999999864

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=89.68  E-value=0.6  Score=44.21  Aligned_cols=36  Identities=31%  Similarity=0.290  Sum_probs=30.2

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      +.+|.|||+|-+|.++|+.|+..+-..+++|+|...
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~   38 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE   38 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            458999999999999999999884334799999763

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=89.56  E-value=0.59  Score=39.62  Aligned_cols=32  Identities=22%  Similarity=0.379  Sum_probs=28.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .+|.+||-|..|...|.+|.++  |.+|.++++.
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~--g~~v~~~d~~   33 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKA--GYEVTVYDRS   33 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHT--TTEEEEEESS
T ss_pred             CEEEEEchHHHHHHHHHHHHhc--CCeEEeeccc
Confidence            4699999999999999999999  9999999987

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=89.56  E-value=0.6  Score=38.53  Aligned_cols=31  Identities=32%  Similarity=0.442  Sum_probs=28.5

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      .|+|||+|-.|..+|..|++.  |. +++++|.+
T Consensus         1 ~VliiG~GglGs~ia~~L~~~--Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARS--GVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHC--CCCEEEEEcCC
Confidence            489999999999999999999  65 89999987

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=89.52  E-value=0.47  Score=44.30  Aligned_cols=31  Identities=19%  Similarity=0.322  Sum_probs=29.0

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .|.|||.|..|.+.|..|+++  |.+|+++++.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~   32 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRR   32 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHC--CCEEEEEECC
Confidence            589999999999999999999  8999999986

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=89.48  E-value=0.5  Score=44.13  Aligned_cols=33  Identities=27%  Similarity=0.397  Sum_probs=29.7

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      ...|+|||+|-+|.++|+.|++.  |. +|+|++|.
T Consensus       127 ~k~vlIlGaGGaaraia~aL~~~--G~~~I~I~nR~  160 (284)
T PRK12549        127 LERVVQLGAGGAGAAVAHALLTL--GVERLTIFDVD  160 (284)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHc--CCCEEEEECCC
Confidence            35799999999999999999998  75 79999986

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=89.42  E-value=0.57  Score=41.65  Aligned_cols=34  Identities=24%  Similarity=0.279  Sum_probs=30.3

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      ....|+|||+|-.|..+|..|++.  |. +++++|.+
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~--Gvg~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARS--GVGNLKLVDFD   61 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHc--CCCeEEEEeCC
Confidence            356799999999999999999999  55 69999987

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=89.37  E-value=0.51  Score=46.34  Aligned_cols=34  Identities=26%  Similarity=0.267  Sum_probs=30.5

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ...|+|+|+|..|+.+|..+...  |.+|+++|..+
T Consensus       202 GktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~  235 (413)
T cd00401         202 GKVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDP  235 (413)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEECCh
Confidence            34799999999999999999988  89999999863

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=89.08  E-value=0.74  Score=43.72  Aligned_cols=34  Identities=26%  Similarity=0.424  Sum_probs=30.0

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCC--eEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKM--KICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~--~V~viE~~   91 (473)
                      ...+|.|||+|-+|.++|+.|+..  +.  .+.|+|..
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~--~~~~el~L~D~~   40 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQ--GIADELVIIDIN   40 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhc--CCCCEEEEEeCC
Confidence            346899999999999999999988  65  79999985

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=89.02  E-value=0.65  Score=47.46  Aligned_cols=36  Identities=42%  Similarity=0.743  Sum_probs=30.9

Q ss_pred             CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710           7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK   44 (473)
Q Consensus         7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~   44 (473)
                      +.+||.+|||+|++|+++|..++..  +.++.++++.+
T Consensus         4 ~~~~DVvIIGGGi~G~~~A~~la~r--G~~V~LlEk~d   39 (502)
T PRK13369          4 PETYDLFVIGGGINGAGIARDAAGR--GLKVLLCEKDD   39 (502)
T ss_pred             CcccCEEEECCCHHHHHHHHHHHhC--CCcEEEEECCC
Confidence            4569999999999999999999965  67888888773

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=89.00  E-value=0.52  Score=47.85  Aligned_cols=33  Identities=21%  Similarity=0.327  Sum_probs=30.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ..|.|||+|..|...|..|+++  |++|+++|+.+
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~a--G~~V~l~d~~~   38 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASA--GHQVLLYDIRA   38 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCH
Confidence            4599999999999999999999  99999999874

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK06223 malate dehydrogenase; Reviewed

Probab=88.95  E-value=0.6  Score=44.28  Aligned_cols=32  Identities=25%  Similarity=0.480  Sum_probs=28.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      .+|.|||+|..|.++|+.++..  |. +|+++|..
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~--~~~ev~L~D~~   35 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALK--ELGDVVLFDIV   35 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCeEEEEEECC
Confidence            4799999999999999999988  54 99999985

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=88.93  E-value=0.71  Score=40.63  Aligned_cols=33  Identities=27%  Similarity=0.229  Sum_probs=30.0

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ...++|+|.|-.|..+|..|.+.  |.+|++.|+.
T Consensus        28 gk~v~I~G~G~vG~~~A~~L~~~--G~~Vvv~D~~   60 (200)
T cd01075          28 GKTVAVQGLGKVGYKLAEHLLEE--GAKLIVADIN   60 (200)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCC
Confidence            35699999999999999999999  9999999875

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK10015 oxidoreductase; Provisional

Probab=88.72  E-value=0.69  Score=46.16  Aligned_cols=36  Identities=22%  Similarity=0.464  Sum_probs=29.9

Q ss_pred             CCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccc
Q psy7710           8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE   45 (473)
Q Consensus         8 ~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~   45 (473)
                      .+||.+|||+|.+|.++|..++..  +.++.++++...
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~~--G~~VlliEr~~~   39 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMARA--GLDVLVIERGDS   39 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHhC--CCeEEEEecCCC
Confidence            469999999999999999999853  678888876643

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=88.65  E-value=0.71  Score=47.21  Aligned_cols=36  Identities=33%  Similarity=0.622  Sum_probs=30.5

Q ss_pred             CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710           7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK   44 (473)
Q Consensus         7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~   44 (473)
                      +.+||.+|||+|++|+++|..++..  +.++.++++.+
T Consensus         4 ~~~~DVvIIGGGi~G~~~A~~la~r--Gl~V~LvEk~d   39 (508)
T PRK12266          4 METYDLLVIGGGINGAGIARDAAGR--GLSVLLCEQDD   39 (508)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHC--CCeEEEEecCC
Confidence            3569999999999999999999854  67888888763

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=88.61  E-value=2.5  Score=46.06  Aligned_cols=33  Identities=18%  Similarity=0.304  Sum_probs=23.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHhc-CCCCeEEEEec
Q psy7710          58 YDVVVVGGGIVGVATARELKLN-YPKMKICLVEK   90 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~-~~G~~V~viE~   90 (473)
                      ..|+|||||.+|+-+|..+... .-+..+++.+.
T Consensus       551 k~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~  584 (1028)
T PRK06567        551 MPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDY  584 (1028)
T ss_pred             CCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhh
Confidence            4799999999999999866531 01455555554

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=88.60  E-value=0.66  Score=47.17  Aligned_cols=32  Identities=19%  Similarity=0.472  Sum_probs=29.9

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .|.|||+|..|...|..|+++  |.+|+++|+.+
T Consensus         6 kIavIG~G~MG~~iA~~la~~--G~~V~v~D~~~   37 (495)
T PRK07531          6 KAACIGGGVIGGGWAARFLLA--GIDVAVFDPHP   37 (495)
T ss_pred             EEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCH
Confidence            599999999999999999999  99999999863

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=88.59  E-value=0.65  Score=41.76  Aligned_cols=33  Identities=30%  Similarity=0.460  Sum_probs=29.5

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCC---eEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKM---KICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~---~V~viE~~   91 (473)
                      ...++|+|+|-+|..+|..|.+.  |.   +|.+++|.
T Consensus        25 ~~rvlvlGAGgAg~aiA~~L~~~--G~~~~~i~ivdr~   60 (226)
T cd05311          25 EVKIVINGAGAAGIAIARLLLAA--GAKPENIVVVDSK   60 (226)
T ss_pred             CCEEEEECchHHHHHHHHHHHHc--CcCcceEEEEeCC
Confidence            35699999999999999999998  76   59999997

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=88.38  E-value=0.74  Score=45.35  Aligned_cols=36  Identities=39%  Similarity=0.543  Sum_probs=30.0

Q ss_pred             CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710           7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK   44 (473)
Q Consensus         7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~   44 (473)
                      ..++|.+|||+|++|.++|..|+..  +.++.++++.+
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~~--G~~v~liE~~~   39 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALADA--GLSVALVEGRE   39 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcC--CCEEEEEeCCC
Confidence            5668999999999999999998853  56787888764

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=88.37  E-value=0.63  Score=43.99  Aligned_cols=32  Identities=16%  Similarity=0.429  Sum_probs=29.0

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .|.|+|+|..|...|+.|++.  |..|+++-|.+
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~--g~~V~~~~R~~   33 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKA--GHDVTLLVRSR   33 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhC--CCeEEEEecHH
Confidence            589999999999999999999  77888888874

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=88.33  E-value=0.57  Score=44.23  Aligned_cols=31  Identities=26%  Similarity=0.553  Sum_probs=27.7

Q ss_pred             EEEEcCChHHHHHHHHHHhcCCCC-eEEEEeccC
Q psy7710          60 VVVVGGGIVGVATARELKLNYPKM-KICLVEKEK   92 (473)
Q Consensus        60 VvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~~   92 (473)
                      |.|||+|..|..+|+.|+..  +. +|+++|...
T Consensus         1 I~IIGaG~vG~~ia~~la~~--~l~eV~L~Di~e   32 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALK--ELGDVVLLDIVE   32 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhC--CCcEEEEEeCCC
Confidence            57999999999999999988  55 999999863

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=88.29  E-value=0.78  Score=41.65  Aligned_cols=35  Identities=23%  Similarity=0.262  Sum_probs=30.6

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ....|+|||+|-.|..+|..|++.+- -+++++|.+
T Consensus        23 ~~~~VlvvG~GglGs~va~~La~~Gv-g~i~lvD~D   57 (240)
T TIGR02355        23 KASRVLIVGLGGLGCAASQYLAAAGV-GNLTLLDFD   57 (240)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCC-CEEEEEeCC
Confidence            35689999999999999999999943 489999987

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=88.16  E-value=0.64  Score=47.31  Aligned_cols=33  Identities=21%  Similarity=0.324  Sum_probs=30.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ..|.|||+|..|...|..|+++  |++|+++|+.+
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~a--G~~V~l~D~~~   40 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQA--GHTVLLYDARA   40 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCH
Confidence            4599999999999999999999  99999999874

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.10  E-value=15  Score=36.41  Aligned_cols=36  Identities=19%  Similarity=0.248  Sum_probs=30.5

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ..+|+|+|+|+.-+-.-+.|.++++-.+|+++-|..
T Consensus       196 ~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG  231 (474)
T COG4529         196 DDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG  231 (474)
T ss_pred             CCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence            345999999999999999999986557899999873

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=88.03  E-value=0.73  Score=43.65  Aligned_cols=34  Identities=26%  Similarity=0.369  Sum_probs=28.8

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      +|+|||+|.+|.++|+.|+..+...+++++|+..
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~   35 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE   35 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            5899999999999999999982115899999863

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>KOG4716|consensus

Probab=88.01  E-value=1  Score=42.16  Aligned_cols=63  Identities=16%  Similarity=0.143  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcC-CeEEEE---cCCC--cEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENP-ESVTIS---TKQG--DHLESSYALVCAGLQADEMALKSGCS  270 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~v~v~---~~~g--~~i~ad~VV~aaG~~s~~l~~~~g~~  270 (473)
                      +.+.+.+.++++|+++...+...++++.+ +...|.   |..+  .+-..|.|++|.|--+  +.+.+|++
T Consensus       240 mae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~--~~~~l~L~  308 (503)
T KOG4716|consen  240 MAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKA--LTDDLNLD  308 (503)
T ss_pred             HHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhcccc--chhhcCCC
Confidence            45557778888999998887777777654 333332   2222  2345789999999764  44555554

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=87.75  E-value=0.74  Score=37.61  Aligned_cols=31  Identities=29%  Similarity=0.426  Sum_probs=26.9

Q ss_pred             EEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          60 VVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        60 VvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ++|+|+|..+.++|..++..  |++|+|+|..+
T Consensus         1 L~I~GaG~va~al~~la~~l--g~~v~v~d~r~   31 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALL--GFRVTVVDPRP   31 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHC--TEEEEEEES-C
T ss_pred             CEEEeCcHHHHHHHHHHHhC--CCEEEEEcCCc
Confidence            58999999999999999999  99999999874

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=87.73  E-value=0.86  Score=40.77  Aligned_cols=31  Identities=26%  Similarity=0.319  Sum_probs=28.2

Q ss_pred             cEEEEc-CChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          59 DVVVVG-GGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        59 dVvIIG-aGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      +|.||| +|..|.+.|..|+++  |.+|+++++.
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~--G~~V~v~~r~   33 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKA--GNKIIIGSRD   33 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhC--CCEEEEEEcC
Confidence            589997 799999999999999  8999999876

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=87.64  E-value=0.65  Score=49.49  Aligned_cols=33  Identities=18%  Similarity=0.317  Sum_probs=30.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ..|.|||+|..|...|+.++..  |++|+++|..+
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~  346 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASK--GVPVIMKDINQ  346 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhC--CCeEEEEeCCH
Confidence            4699999999999999999999  99999999873

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=87.64  E-value=1.5  Score=32.49  Aligned_cols=33  Identities=33%  Similarity=0.372  Sum_probs=28.8

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEec
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEK   90 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~   90 (473)
                      ..+++|+|+|.+|..+|..|.+.+ +.+|.++++
T Consensus        23 ~~~v~i~G~G~~g~~~a~~l~~~~-~~~v~v~~r   55 (86)
T cd05191          23 GKTVVVLGAGEVGKGIAKLLADEG-GKKVVLCDR   55 (86)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence            456999999999999999999874 478999988

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	473
3dme_A	369	Crystal Structure Of Conserved Exported Protein Fro		3e-21

>pdb|3DME|A Chain A, Crystal Structure Of Conserved Exported Protein From Bordetella Pertussis. Northeast Structural Genomics Target Ber141 Length = 369

Iteration: 1
 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 124/263 (47%), Gaps = 15/263 (5%)
Query: 71  ATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAY 130
           A AR L       ++ + E  + +G   +  NS V+HAGIYY   +LKA+LCV G +L Y
Sbjct: 18  AIARALAAG--GHEVLVAEAAEGIGTGTSSRNSEVIHAGIYYPADSLKARLCVRGKHLLY 75
Query: 131 EYFDKRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG 189
           EY   R +P+++ GKLIVA ++ +   L  +  R+  N V D++ +     + +EP    
Sbjct: 76  EYCAARGVPHQRLGKLIVATSDAEASQLDSIARRAGANGVDDLQHIDGAAARRLEPALHC 135
Query: 190 VKAIHSPNTGIVD-WGLVTRVMGEEFCELGGEIRLNQQVESFKENPES---VTISTKQGD 245
             A+ SP+TGIVD   L+    G+   + G ++  +  + + +  PE    +     +  
Sbjct: 136 TAALVSPSTGIVDSHALMLAYQGDAESD-GAQLVFHTPLIAGRVRPEGGFELDFGGAEPM 194
Query: 246 HLESSYALVCAGLQADEMALKSGCSLEPAIVP---FRGEYLLLNPAKQHLVRGNIYPVPD 302
            L     +  AGL A  +A +       +I P    +G Y  L  A +      IYPV  
Sbjct: 195 TLSCRVLINAAGLHAPGLARRIEGIPRDSIPPEYLCKGSYFTL--AGRAPFSRLIYPV-- 250
Query: 303 PNFPFLGVHFTPRMDGSVWLGPN 325
           P    LGVH T  + G    GP+
Sbjct: 251 PQHAGLGVHLTLDLGGQAKFGPD 273

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	473
3dme_A	369	Conserved exported protein; structural genomics, P	1e-143
3dme_A	369	Conserved exported protein; structural genomics, P	7e-11
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	5e-34
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	2e-27
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	1e-23
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	1e-22
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	2e-21
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	3e-20
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	2e-19
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	6e-19
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	5e-16
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	9e-15
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	7e-13
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	4e-10
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	3e-04
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	5e-09
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	9e-05
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	1e-08
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	2e-08
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	1e-05
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	3e-05
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	2e-04
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	5e-04
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	5e-04
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	6e-04
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	9e-04

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Length = 369

 Score =  414 bits (1066), Expect = e-143
 Identities = 92/366 (25%), Positives = 148/366 (40%), Gaps = 48/366 (13%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
            D +V+G G+VG+A AR L       ++ + E  + +G   +  NS V+HAGIYY   +L
Sbjct: 5   IDCIVIGAGVVGLAIARALAA--GGHEVLVAEAAEGIGTGTSSRNSEVIHAGIYYPADSL 62

Query: 118 KAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVS 176
           KA+LCV G +L YEY   R +P+++ GKLIVA ++ +   L  +  R+  N V D++ + 
Sbjct: 63  KARLCVRGKHLLYEYCAARGVPHQRLGKLIVATSDAEASQLDSIARRAGANGVDDLQHID 122

Query: 177 AEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPES 236
               + +EP      A+ SP+TGIVD   +      +    G ++  +  + + +  PE 
Sbjct: 123 GAAARRLEPALHCTAALVSPSTGIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEG 182

Query: 237 ---VTISTKQGDHLESSYALVCAGLQADEMALKSGCSLE---PAIVPFRGEYLLLNPAKQ 290
              +     +   L     +  AGL A  +A +         P     +G Y  L  A +
Sbjct: 183 GFELDFGGAEPMTLSCRVLINAAGLHAPGLARRIEGIPRDSIPPEYLCKGSYFTL--AGR 240

Query: 291 HLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLR 350
                 IYPVP      LGVH T  + G    GP+       E Y               
Sbjct: 241 APFSRLIYPVPQH--AGLGVHLTLDLGGQAKFGPDTEW-IATEDYTLDPRRADVF----- 292

Query: 351 YPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSG 410
                                          ++ Y   +  G +  G +G+R + +S   
Sbjct: 293 ----------------------------YAAVRSYWPALPDGALAPGYTGIRPK-ISGPH 323

Query: 411 DLVDDF 416
           +   DF
Sbjct: 324 EPAADF 329

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Length = 369

 Score = 62.5 bits (153), Expect = 7e-11
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 417 GVKAIHSPHTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPEMV 465
              A+ SP TGIVD   +      +    G ++  +  + + +  PE  
Sbjct: 135 CTAALVSPSTGIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGG 183

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Length = 381

 Score =  130 bits (329), Expect = 5e-34
 Identities = 48/282 (17%), Positives = 94/282 (33%), Gaps = 33/282 (11%)

Query: 55  PALYDVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYK 113
           P   D +V+G GI G +T   L        ++ ++E+E + G H TG ++        Y 
Sbjct: 7   PIEADYLVIGAGIAGASTGYWLSAHG----RVVVLEREAQPGYHSTGRSAAHYTVA--YG 60

Query: 114 PGTLKAKLCVEGMNLAYEYFDKR---NIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVK 170
              +   L        ++        +       +++V  ++  E L   YE        
Sbjct: 61  TPQV-RALTAASRAF-FDNPPAGFCEHPLLSPRPEMVVDFSDDPEELRRQYESGKALVP- 117

Query: 171 DVRLVSAEEIKTIEPYC--KGVK-AIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQV 227
            +RL+ AE+  +I P      V  A + P    +D   + +          G++  N + 
Sbjct: 118 QMRLLDAEQACSIVPVLRRDKVFGATYDPTGADIDTDALHQGYLRGIRRNQGQVLCNHEA 177

Query: 228 ESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNP 287
              +    +  +    G    ++  +  AG   D +A  +G      + P R    +  P
Sbjct: 178 LEIRRVDGAWEVRCDAGS-YRAAVLVNAAGAWCDAIAGLAGVRPLG-LQPKRRSAFIFAP 235

Query: 288 AKQHLVRGNIYPVPDPNFPFL-----GVHFTPRMDGSVWLGP 324
                       +   ++P L       +  P   G +   P
Sbjct: 236 PP---------GIDCHDWPMLVSLDESFYLKPD-AGMLLGSP 267

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382

 Score =  111 bits (281), Expect = 2e-27
 Identities = 58/275 (21%), Positives = 105/275 (38%), Gaps = 30/275 (10%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
           Y+ VV+GGGI+G A A  L          L E    +G   T   +G++ A    +    
Sbjct: 18  YEAVVIGGGIIGSAIAYYLAKEN--KNTALFES-GTMGGRTTSAAAGMLGAHAECEERDA 74

Query: 118 KAKLCVEGMNLAYEYFDKR-------NIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVK 170
                +    L Y+   +        +I     G   +A +E      D+ +    +++ 
Sbjct: 75  FFDFAMHSQRL-YKGLGEELYALSGVDIRQHNGGMFKLAFSE-----EDVLQLRQMDDLD 128

Query: 171 DVRLVSAEEIKTIEPYC-KGVK-AIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVE 228
            V   S EE+   EPY    +  A    +   V+   V +   +    LG EI  +  V 
Sbjct: 129 SVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVL 188

Query: 229 SFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPA 288
             + + E++ I T  GD + +++ +V +G+ +     + G  L  A +P +GE L +   
Sbjct: 189 HVERDGEALFIKTPSGD-VWANHVVVASGVWSGMFFKQLG--LNNAFLPVKGECLSVWND 245

Query: 289 KQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLG 323
              L +     +          +  PR  G + +G
Sbjct: 246 DIPLTK----TLYHD-----HCYIVPRKSGRLVVG 271

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Length = 448

 Score =  102 bits (255), Expect = 1e-23
 Identities = 51/307 (16%), Positives = 95/307 (30%), Gaps = 49/307 (15%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
           +D VVVG G+VG+A A  LK+      + +V+     G   +G +        +      
Sbjct: 24  FDYVVVGAGVVGLAAAYYLKVW-SGGSVLVVDAGHAPGSGDSGRSMAAFRT-FFSSTMNR 81

Query: 118 KAKLCVEGMNLAYEYFDK--RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLV 175
              +    + L +E   +   ++   K G L V   E+   + +    + +    D  ++
Sbjct: 82  --LVAGSTVRL-FEDAQRGGEDLGLVKSGYLFVYDRERWREVEEPLREAGEEGR-DYLII 137

Query: 176 SAEEIKTIEPYCKGVK---------------AIHSPNTGIVDWGLVTRVMGEEFCELGGE 220
             EE++        V                A+   + G +D   V           G E
Sbjct: 138 PPEELERRLGMNTRVSDGEEAEVLGVGDVEGAVLIRSAGFLDAEKVVDYYYRRASGAGVE 197

Query: 221 IRLNQQVESFKENPESVT----------------ISTKQGDHLESSYALV-CAGLQADEM 263
               ++V   +  P                         G  +E    LV  AG+ ++ +
Sbjct: 198 FIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDGTRVEVGEKLVVAAGVWSNRL 257

Query: 264 ALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYP-VPDPNFPFL-----GVHFTPR-M 316
               G        P +     ++ + + L R      +     P L      V   P   
Sbjct: 258 LNPLGIDT-F-SRPKKRMVFRVSASTEGLRRIMREGDLAGAGAPPLIILPKRVLVRPAPR 315

Query: 317 DGSVWLG 323
           +GS W+ 
Sbjct: 316 EGSFWVQ 322

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* Length = 405

 Score = 98.5 bits (246), Expect = 1e-22
 Identities = 62/323 (19%), Positives = 113/323 (34%), Gaps = 36/323 (11%)

Query: 55  PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKP 114
              YD ++VGGG  G+ATA  L  N+    + ++EK   L       N+ ++ +  Y   
Sbjct: 19  KKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEK-GWLAGGNMARNTTIIRS-NYLWD 76

Query: 115 GTLKAKLCVEGMNLAYEYFDKR---NIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVK 170
            +  A +  + + L +E   +    +  + + G L +A     +       E +  N V 
Sbjct: 77  ES--AGIYEKSLKL-WEQLPEDLEYDFLFSQRGVLNLAHTLGDVRESVRRVEANKLNGV- 132

Query: 171 DVRLVSAEEIKTIEPYC-------KGVK-AIHSPNTGIVDWGLVTRVMGEEFCELGGEIR 222
           D   +   ++K   P           V  A   P  GI     V      +  E+G +I 
Sbjct: 133 DAEWLDPSQVKEACPIINTSDDIRYPVMGATWQPRAGIAKHDHVAWAFARKANEMGVDII 192

Query: 223 LNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGE 281
            N +V  F ++ E VT + T +G  + +    +     +  +A  +G  L P I     +
Sbjct: 193 QNCEVTGFIKDGEKVTGVKTTRGT-IHAGKVALAGAGHSSVLAEMAGFEL-P-IQSHPLQ 249

Query: 282 YLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPR-MDGSVWLGPNAVLAFKKEGYRWRDF 340
            L+    +         PV         +H           +    + ++   G R   F
Sbjct: 250 ALVSELFE---------PVHPTVVMSNHIHVYVSQAHKGELVMGAGIDSYNGYGQR-GAF 299

Query: 341 SVRELFSTL---RYPGFWRLGLK 360
            V +         +P F R  + 
Sbjct: 300 HVIQEQMAAAVELFPIFARAHVL 322

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Length = 389

 Score = 94.7 bits (236), Expect = 2e-21
 Identities = 58/281 (20%), Positives = 99/281 (35%), Gaps = 33/281 (11%)

Query: 58  YDVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEKELGMHQTGHNSGVVHA--GIY--- 111
           +DV+VVG G +G+A   +L K      K  LV+           H +G  H    I    
Sbjct: 4   FDVIVVGAGSMGMAAGYQLAKQGV---KTLLVDA------FDPPHTNGSHHGDTRIIRHA 54

Query: 112 YKPGTLKAKLCVEGMNLAYEYFDK------RNIPYKKCGKLIVALNEQLEPLHDLYERSI 165
           Y  G     L       + E + +        I + K G L+     +   + +  E + 
Sbjct: 55  YGEGREYVPL----ALRSQELWYELEKETHHKI-FTKTGVLVFGPKGESAFVAETMEAAK 109

Query: 166 QNNVKDVRLVSAEEIKTIEPYCK---GVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIR 222
           ++++  V L+  +EI    P         AI  PN+G++      R   E     G ++ 
Sbjct: 110 EHSL-TVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVL 168

Query: 223 LNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEY 282
            + +VE F  +P+SV I T  G    +   +V  G    ++  K    L+  + P+R   
Sbjct: 169 THTRVEDFDISPDSVKIETANGS-YTADKLIVSMGAWNSKLLSKLN--LDIPLQPYRQVV 225

Query: 283 LLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLG 323
                 +        +P      P    +  P   G     
Sbjct: 226 GFFESDESKYSNDIDFPGFMVEVPNGIYYGFPSFGGCGLKL 266

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Length = 382

 Score = 91.5 bits (228), Expect = 3e-20
 Identities = 48/242 (19%), Positives = 100/242 (41%), Gaps = 17/242 (7%)

Query: 55  PALYDVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYK 113
           P   ++VV+GGGIVGV  A EL K      ++ ++EK + +G   T      +    +  
Sbjct: 3   PEKSEIVVIGGGIVGVTIAHELAKRGE---EVTVIEK-RFIGSGSTFRCGTGIRQ-QFND 57

Query: 114 PGTLKAKLCVEGMNLAYEYFDKR-NIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKD 171
                 ++    + L ++ + +     +K+ G L +  ++ +++      E   +  V  
Sbjct: 58  EAN--VRVMKRSVEL-WKKYSEEYGFSFKQTGYLFLLYDDEEVKTFKRNIEIQNKFGV-P 113

Query: 172 VRLVSAEEIKTIEPYC--KGVK-AIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVE 228
            +L++ EE K I P      V  A  +P  G  D    T     +  E G ++    +V+
Sbjct: 114 TKLITPEEAKEIVPLLDISEVIAASWNPTDGKADPFEATTAFAVKAKEYGAKLLEYTEVK 173

Query: 229 SFKENPESVT-ISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNP 287
            F      +  + T +G  +++   +      A+ +   +G   +  I P++ + ++  P
Sbjct: 174 GFLIENNEIKGVKTNKGI-IKTGIVVNATNAWANLINAMAGIKTKIPIEPYKHQAVITQP 232

Query: 288 AK 289
            K
Sbjct: 233 IK 234

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Length = 372

 Score = 88.6 bits (220), Expect = 2e-19
 Identities = 49/311 (15%), Positives = 106/311 (34%), Gaps = 38/311 (12%)

Query: 58  YDVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIY---YK 113
           YD++++G G VG A      +       + + +       HQ G + G     +    Y 
Sbjct: 3   YDLIIIGSGSVGAAAGYYATRAGL---NVLMTDA-HMPP-HQHGSHHG--DTRLIRHAYG 55

Query: 114 PGTLKAKLCVEGMNLAYEYFDK------RNIPYKKCGKLIVALNEQLEPLHDLYERSIQN 167
            G     L    +  A   +D+       +  + + G + +   +    L ++   + Q 
Sbjct: 56  EGEKYVPL----VLRAQMLWDELSRHNEDDPIFVRSGVINLGPADS-TFLANVAHSAEQW 110

Query: 168 NVKDVRLVSAEEIKTIEPYCK---GVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLN 224
            + +V  + A+ I    P  +       +   ++G +   L  +   +   E G     N
Sbjct: 111 QL-NVEKLDAQGIMARWPEIRVPDNYIGLFETDSGFLRSELAIKTWIQLAKEAGCAQLFN 169

Query: 225 QQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLL 284
             V + + + + VTI T  G++ ++  A+VCAG    ++  +        + P R  +  
Sbjct: 170 CPVTAIRHDDDGVTIETADGEY-QAKKAIVCAGTWVKDLLPELP------VQPVRKVFAW 222

Query: 285 LNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFS--- 341
                ++ V+                +  P  + ++ +G +              F+   
Sbjct: 223 YQADGRYSVKNKFPAFTGELPNGDQYYGFPAENDALKIGKHNGGQVIHSADERVPFAEVV 282

Query: 342 --VRELFSTLR 350
               E F  LR
Sbjct: 283 SDGSEAFPFLR 293

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397

 Score = 87.5 bits (217), Expect = 6e-19
 Identities = 43/288 (14%), Positives = 86/288 (29%), Gaps = 35/288 (12%)

Query: 55  PALYDVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEKELGMHQ--TGHNSGVVHAGIY 111
              YDVVVVGGG VG+ATA ++ +  +   ++ ++E+          T            
Sbjct: 2   TESYDVVVVGGGPVGLATAWQVAERGH---RVLVLER-HTFFNENGGTSGAERHWRL--Q 55

Query: 112 YKPGTLKAKLCVEGMNLAYEYFDK------RNIPYKKCGKLIVA---LNEQLEPLHDLYE 162
           Y    L  +L           +        R +   + G L      +      +     
Sbjct: 56  YTQEDL-FRL----TLETLPLWRALESRCERRL-IHEIGSLWFGDTDVVTNEGQISGTAA 109

Query: 163 RSIQNNVKDVRLVSAEEIKTIEPYC---KGVKAIHSPNTGIVDWGLVTRVMGEEFCELGG 219
              + +V     + A +I+    +    +  +    P+ G +D       +       G 
Sbjct: 110 MMDKLSV-RYEWLKATDIERRFGFRGLPRDYEGFLQPDGGTIDVRGTLAALFTLAQAAGA 168

Query: 220 EIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFR 279
            +R  + V     + + V+++T +G    +   ++  G   +++    G     A   + 
Sbjct: 169 TLRAGETVTELVPDADGVSVTTDRGT-YRAGKVVLACGPYTNDLLEPLG--ARLAYSVYE 225

Query: 280 GEYLLLNPAKQHLVRGNIYPVPDPNFP----FLGVHFTPRMDGSVWLG 323
                   A         +    P       F G    P   G     
Sbjct: 226 MAIAAYRQATPVTEAPFWFAFQQPTPQDTNLFYGFGHNPWAPGEFVRC 273

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Length = 438

 Score = 78.7 bits (194), Expect = 5e-16
 Identities = 45/347 (12%), Positives = 99/347 (28%), Gaps = 46/347 (13%)

Query: 49  MSSSQSPALYDVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEKELGMHQTGHN--SGV 105
           M+ ++S     +++VG G  G +TA  L +  Y    + +++    +    +  N  + V
Sbjct: 1   MAVTKS---SSLLIVGAGTWGTSTALHLARRGY--TNVTVLDP-YPVPSAISAGNDVNKV 54

Query: 106 VHAGIYYKPGTLKAKLCVEGMNLAYEYFDKR---NIPYKKCGKLIVALNEQLEPLHDLYE 162
           + +G  Y     + ++       A+  +         Y   G L+ A +++         
Sbjct: 55  ISSG-QYSNNKDEIEVNEILAEEAFNGWKNDPLFKPYYHDTGLLMSACSQE-GLDRLGVR 112

Query: 163 RSIQNNVKDVRLVSAEEIKTIEP-------YCKGVKAIHSPNTGIVDWGLVTRVMGEEFC 215
                +   V L   E+ + + P       +            G             E  
Sbjct: 113 VRPGEDPNLVELTRPEQFRKLAPEGVLQGDFPGWKGYFARSGAGWAHARNALVAAAREAQ 172

Query: 216 ELGGEIRLNQQ---VESFKENPESVT-ISTKQGDHLESSYALVCAGLQADEMALKSGCSL 271
            +G +         V +       V    T  G    +    +CAG  A +         
Sbjct: 173 RMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASAGQFL-----DF 227

Query: 272 EPAIVPFRGE--YLLLNPAKQHLVRGN-----------IYPVPDPNFPFLGVHFTPRMDG 318
           +  + P      ++ L P ++ L +               P  +     +     P    
Sbjct: 228 KNQLRPTAWTLVHIALKPEERALYKNIPVIFNIERGFFFEPDEERGEIKICDEH-PGYTN 286

Query: 319 SVWLGPNAVLAFKKEGYRWRDFSVRELFSTL--RYPGFWRLGLKYTR 363
            V      +++   E  +    +   + + L    P        + R
Sbjct: 287 MVQSADGTMMSIPFEKTQIPKEAETRVRALLKETMPQLADRPFSFAR 333

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Length = 830

 Score = 75.9 bits (187), Expect = 9e-15
 Identities = 43/226 (19%), Positives = 86/226 (38%), Gaps = 18/226 (7%)

Query: 55  PALYDVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEKELGMHQ--TGHNSGVVHAGIY 111
            +   +V++G GIVG   A EL    +    I ++++   L M    T H  G+V     
Sbjct: 2   ASTPRIVIIGAGIVGTNLADELVTRGWN--NITVLDQ-GPLNMPGGSTSHAPGLVFQ--- 55

Query: 112 YKPGTLKAKLCVEGMNLAYEYFDKRNIP-YKKCGKLIVALN-EQLEPLHDLYERSIQNNV 169
             P    A      +        +  +  + + G L VA    +L  L      +    +
Sbjct: 56  TNPSKTMASFAKYTVEK-LLSLTEDGVSCFNQVGGLEVATTETRLADLKRKLGYAAAWGI 114

Query: 170 KDVRLVSAEEIKTIEPYC--KGVK-AIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQ 226
            + RL+S  E + + P    + +   +H P+ G+       +++ +     G   R +  
Sbjct: 115 -EGRLLSPAECQELYPLLDGENILGGLHVPSDGLASAARAVQLLIKRTESAGVTYRGSTT 173

Query: 227 VESFKENPESVT-ISTKQGDHLESSYALVCAGLQADEMALKSGCSL 271
           V   +++   VT + T  G  + +   + CAG    ++    G ++
Sbjct: 174 VTGIEQSGGRVTGVQTADGV-IPADIVVSCAGFWGAKIGAMIGMAV 218

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} Length = 405

 Score = 69.3 bits (168), Expect = 7e-13
 Identities = 42/301 (13%), Positives = 83/301 (27%), Gaps = 31/301 (10%)

Query: 33  PKMKTCLVEKEKEFFSMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK 92
           P   T        +  +    +   +D+VV+G G +G A A  L+   P   + LVE+  
Sbjct: 12  PPDPTPPRRAGSVWAHVGQHFTEEAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGG 71

Query: 93  ELGMHQ-TGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALN 151
                  T    GV  A     P   +A+       L       + +  +    L +   
Sbjct: 72  LPNEEGATILAPGVWTA--QDIPAGQEAQAEWTREQLLGALGSGKTLEVEDRPLLHLLPA 129

Query: 152 EQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMG 211
            +   L    +         + L+    +           A   P       G +  +  
Sbjct: 130 GEGSGLTPTLDALADFPEA-LALLDPARLPV---------ARVDPRALTYRPGSLALLAA 179

Query: 212 EEFCELGGEIRLNQQVESFK--ENPESVTIS------TKQGDHLESSYALVCAGLQADEM 263
           ++    G  + LN + E          +T++        +   + +   +V AG     +
Sbjct: 180 QQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETRQIRAGVIIVAAGAAGPAL 239

Query: 264 ALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLG 323
             +           +R    L   +              P     G+   P+  G   + 
Sbjct: 240 VEQGLGLHTRHGRAYRQFPRLDLLSGAQT----------PVLRASGLTLRPQNGGYTLVP 289

Query: 324 P 324
            
Sbjct: 290 A 290

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344

 Score = 60.5 bits (146), Expect = 4e-10
 Identities = 39/259 (15%), Positives = 76/259 (29%), Gaps = 61/259 (23%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
            D+V+VG G  G++ A  L    P ++I +VE     G             G  +  G L
Sbjct: 80  TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPG-------------GGAWLGGQL 126

Query: 118 KAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSA 177
            + + +     A  + D+  +PY+  G  +V  +                        +A
Sbjct: 127 FSAMVMR--KPADVFLDEVGVPYEDEGDYVVVKH------------------------AA 160

Query: 178 EEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKE----- 232
               T+       K +  PN  + +   V  ++  +          + + E   +     
Sbjct: 161 LFTSTVLS-----KVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAG 215

Query: 233 ---NPESVTISTKQGDH-----LESSYALVCAGLQADEMA-LKSGCSLEPAIVPFRGE-Y 282
              N   V++            + +   +   G      A           +    G   
Sbjct: 216 VVTNWTLVSMHHDDQSAMDPNTINAPVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRG 275

Query: 283 LLLNPAKQHLVR--GNIYP 299
           L +  A+  +V     I P
Sbjct: 276 LDMQSAEDAIVNNTREIVP 294

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 10  YDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMS 50
            D+V+VG G  G++ A  L    P ++  +VE        +
Sbjct: 80  TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGA 120

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score = 56.7 bits (136), Expect = 5e-09
 Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 20/159 (12%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
            DV++VG G  G++ A  +  N P +K+C++E     G             G  +  G L
Sbjct: 66  SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPG-------------GGSWLGGQL 112

Query: 118 KAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSA 177
            + + +     A+ +  +  IPY+  G  +V  +  L     L +     NVK       
Sbjct: 113 FSAMVMRKP--AHLFLQELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCV 170

Query: 178 EEIKTIEPYCKGVKAIHSPNTGIV-DWGLVTRVMGEEFC 215
           E++ T  P  KG   +     G+V +W LVT+  G + C
Sbjct: 171 EDLVTRPPTEKGEVTV----AGVVTNWTLVTQAHGTQCC 205

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score = 43.6 bits (102), Expect = 9e-05
 Identities = 12/53 (22%), Positives = 23/53 (43%)

Query: 10  YDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSSQSPALYDVVV 62
            D+++VG G  G++ A  +    P +K C++E        S         +V+
Sbjct: 66  SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVM 118

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Length = 363

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 51/285 (17%), Positives = 93/285 (32%), Gaps = 58/285 (20%)

Query: 49  MSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHA 108
           +          VVV+G G++G+++A  L      + I      ++L    +        A
Sbjct: 1   LMMHSQK---RVVVLGSGVIGLSSALILARKGYSVHIL----ARDLPEDVSSQTFASPWA 53

Query: 109 GIYYKP------GTLKAKLCVEGMNLAYEYFDK---RNIPYKKCGKLIVALNEQLEPLHD 159
           G  + P      G  +AK         ++ + +           G    A NE     H 
Sbjct: 54  GANWTPFMTLTDGPRQAKWEES----TFKKWVELVPTGHAMWLKGTRRFAQNEDGLLGHW 109

Query: 160 LYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGG 219
             +        + R + + E     P   GV    + +T  V      + +  E  +LG 
Sbjct: 110 YKDI-----TPNYRPLPSSE---CPPGAIGV----TYDTLSVHAPKYCQYLARELQKLGA 157

Query: 220 EIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFR 279
                + V S ++  +   +             +   GL A  +A       + A  P R
Sbjct: 158 TFE-RRTVTSLEQAFDGADL------------VVNATGLGAKSIAG----IDDQAAEPIR 200

Query: 280 GEYLLL-NPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLG 323
           G+ +L+ +P K+  +  +     DP       +  PR  G V  G
Sbjct: 201 GQTVLVKSPCKRCTMDSS-----DPAS---PAYIIPRPGGEVICG 237

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* Length = 351

 Score = 54.7 bits (131), Expect = 2e-08
 Identities = 43/269 (15%), Positives = 91/269 (33%), Gaps = 37/269 (13%)

Query: 60  VVVVGGGIVGVATARELKLNYPKMKICLVEK--EKELGMHQTGHNSGVVHAGIYYKPGTL 117
           VVV+G G++G++TA  +   Y  +   L  K          T   +  +       P   
Sbjct: 3   VVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAAGLWQPYLSDPNNP 62

Query: 118 KAKLCVEGMNLAYEYFDK--RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLV 175
           +     +     ++Y      +   +  G  +++          + + S ++ V   R +
Sbjct: 63  QEADWSQ---QTFDYLLSHVHSPNAENLGLFLISGYNLFH--EAIPDPSWKDTVLGFRKL 117

Query: 176 SAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPE 235
           +  E+                 + I++     + + E   E G +    ++VESF+E   
Sbjct: 118 TPREL----DMFPDYGYGWFHTSLILEGKNYLQWLTERLTERGVKFF-QRKVESFEEV-- 170

Query: 236 SVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLL-NPAKQHLVR 294
                        +   + C G+ A  +        +P + P RG+ + +  P  +H + 
Sbjct: 171 ---------AREGADVIVNCTGVWAGALQ------RDPLLQPGRGQIMKVDAPWMKHFIL 215

Query: 295 GNIYPVPDPNFPFLGVHFTPRMDGSVWLG 323
            +       N P++     P     V LG
Sbjct: 216 THDPERGIYNSPYI----IPGTQT-VTLG 239

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* Length = 584

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 7/53 (13%)

Query: 58  YDVVVVGGGIVGVATARELK----LNYPKMKICLVEKEKELGMHQTGHNSGVV 106
            DVV+VG G  G++ A  LK     +   +++CLVEK   +G H     SG  
Sbjct: 36  ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTL---SGAC 85

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score = 45.4 bits (107), Expect = 3e-05
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL-GMHQTGHNSGVV 106
             +V+VGGGI G+A A   +  +P + I L+E  + L G   T    G  
Sbjct: 5   KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYREDGFT 54

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 16/37 (43%), Positives = 21/37 (56%)

Query: 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
           VVV+GGGI G+A +  L       K+ LVE  + LG
Sbjct: 4  TVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLG 40

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 41.7 bits (97), Expect = 4e-04
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 50 SSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
             +  +   V V+G G+ G+A A +LK+    + + + E E + G
Sbjct: 6  GEDKHSSAKRVAVIGAGVSGLAAAYKLKI--HGLNVTVFEAEGKAG 49

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 4e-04
 Identities = 59/448 (13%), Positives = 122/448 (27%), Gaps = 150/448 (33%)

Query: 26  RELKLKYPKMKTCL-----VEKEKEF--FSMSS-----SQSPALYDVVVVGGGIVGVATA 73
           R L LK    + CL     V+  K +  F++S      ++   + D +         AT 
Sbjct: 235 RRL-LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL-------SAATT 286

Query: 74  RELKLNYPKMKICLVEKEKE------LGM------HQTGHNSGVVHAGIYYKPGTLKAKL 121
             + L+     + L   E +      L         +    +    + I        A+ 
Sbjct: 287 THISLD--HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII--------AES 336

Query: 122 CVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEP--LHDLYER-SI-QNNVKDVRLVSA 177
             +G+   ++ +   N    K   +I +    LEP     +++R S+   +      +  
Sbjct: 337 IRDGLAT-WDNWKHVN--CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH----IPT 389

Query: 178 EEIKTIEPYCKGVKAIHSPNTGIVDWG-LVTRVMGEEFCELGGEIRLNQQVESFKENPES 236
                +                   W  ++   +     +L        +    ++ P+ 
Sbjct: 390 ---ILLSLI----------------WFDVIKSDVMVVVNKL-------HKYSLVEKQPKE 423

Query: 237 VTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGN 296
            TIS      + S Y  +   ++ +        +L  +IV     Y +           +
Sbjct: 424 STIS------IPSIYLELK--VKLENEY-----ALHRSIV---DHYNIPKTFDSD----D 463

Query: 297 IYPVPDPN--FPFLGVHF-TPRMDGSVWLGPNAVLAF-------KKEGYRWRDF-SVREL 345
           + P       +  +G H         + L     L F       + +   W    S+   
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523

Query: 346 FSTLRYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQA 405
              L+          Y  Y              VN +  ++ +IE               
Sbjct: 524 LQQLK---------FYKPYICDN---DPKYERLVNAILDFLPKIEE-------------- 557

Query: 406 LSSSGDLVDDFGVKAIHSPHTGIVDWGL 433
                          I S +T ++   L
Sbjct: 558 -------------NLICSKYTDLLRIAL 572

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 41.4 bits (96), Expect = 5e-04
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 48 SMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
          +++ +      DV+V+G G  G+  A+ L          +V+  +  G
Sbjct: 1  AIAMTHPDISVDVLVIGAGPTGLGAAKRLN-QIDGPSWMIVDSNETPG 47

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 8/51 (15%)

Query: 49 MSSSQSPALYDVVVVGGGIVGVATAREL----KLNYPKMKICLVEKEKELG 95
          MS  +      VV++GGGI G+A A  +    K     +++ LVE    +G
Sbjct: 1  MSDGK----KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVG 47

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEK 90
           DV++ G GI G   A  L       ++ +VE+
Sbjct: 7  IDVLINGCGIGGAMLAYLLGRQ--GHRVVVVEQ 37

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 40.6 bits (95), Expect = 9e-04
 Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 8/64 (12%)

Query: 49  MSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHA 108
           MS S+      + ++G G  G+A    L+         ++E+   +G    G      + 
Sbjct: 1   MSISKDS---RIAIIGAGPAGLAAGMYLEQAGFH-DYTILERTDHVG----GKCHSPNYH 52

Query: 109 GIYY 112
           G  Y
Sbjct: 53  GRRY 56

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	473
3dme_A	369	Conserved exported protein; structural genomics, P	100.0
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	100.0
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	100.0
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	100.0
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	100.0
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	100.0
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	100.0
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	100.0
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	100.0
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	100.0
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	100.0
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	100.0
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	100.0
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	100.0
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.98
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.97
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	99.97
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	99.97
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.97
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.65
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.6
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.58
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.57
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.55
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.53
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.53
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.49
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.48
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.47
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.47
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.47
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.46
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.46
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.46
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.45
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.45
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.45
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	99.45
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.43
3atr_A	453	Conserved archaeal protein; saturating double bond	99.43
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.43
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.41
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.4
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	99.39
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	99.38
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.38
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	99.37
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.36
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	99.35
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.35
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.35
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.32
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.32
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.32
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	99.31
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.3
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	99.3
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.3
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.29
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.29
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	99.29
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.27
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.27
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	99.27
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.25
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	99.25
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.25
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	99.24
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	99.24
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	99.24
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.23
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	99.23
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.22
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.22
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	99.21
4fk1_A	304	Putative thioredoxin reductase; structural genomic	99.21
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	99.21
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	99.21
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.2
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	99.2
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.2
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.2
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	99.19
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	99.19
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	99.19
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	99.18
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.18
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.18
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	99.17
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	99.16
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	99.16
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.16
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	99.13
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	99.13
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.13
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	99.13
4dna_A	463	Probable glutathione reductase; structural genomic	99.13
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.13
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.13
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	99.13
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.13
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	99.12
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.12
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.12
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.11
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	99.11
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.1
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	99.09
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	99.08
4hb9_A	412	Similarities with probable monooxygenase; flavin,	99.08
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.08
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.08
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	99.08
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	99.06
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	99.05
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	99.05
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	99.05
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	99.05
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	99.04
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	99.03
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	99.03
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	99.03
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.02
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.02
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	99.01
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	99.0
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	99.0
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.0
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	99.0
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.0
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.99
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	98.97
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.96
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.95
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.94
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.94
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	98.93
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.92
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.91
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.91
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.9
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.9
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.9
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	98.89
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.89
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.88
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.87
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	98.87
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.85
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.85
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	98.84
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	98.84
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	98.84
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.84
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.82
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.81
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.81
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.8
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.8
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.78
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.77
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.77
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.77
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.76
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.76
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.74
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.74
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	98.74
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	98.74
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.73
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.73
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.71
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.7
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.69
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.68
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.67
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.67
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.67
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.66
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.66
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.65
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.65
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.63
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.63
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.63
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.63
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.62
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.61
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.6
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.6
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.58
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.58
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.57
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.57
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.57
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.56
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.56
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.56
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.56
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.56
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.55
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.55
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.55
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.54
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.54
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.54
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.52
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.52
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.52
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.51
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.5
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.5
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.5
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.49
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.48
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.46
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.45
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.43
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.43
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.42
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.42
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.4
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.39
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.38
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.38
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.37
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.36
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.34
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.31
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.27
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.26
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.26
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.2
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.19
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.18
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	98.17
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.15
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.14
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	98.1
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.1
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	98.1
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.1
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.08
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.06
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	98.06
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.05
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	98.05
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.02
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.99
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.95
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.95
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.9
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.86
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.86
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.85
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	97.85
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	97.83
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	97.83
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.82
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.79
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	97.75
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.73
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.71
3r9u_A	315	Thioredoxin reductase; structural genomics, center	97.7
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.69
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.63
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.59
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.59
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.56
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.55
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.5
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.45
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	97.43
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.42
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.34
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.34
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.3
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.28
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.27
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.24
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.23
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.16
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.14
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.12
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.0
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	96.85
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	96.69
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	96.66
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	96.64
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	96.53
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	96.45
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	96.16
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.6
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.43
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	95.39
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.18
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	95.11
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	95.09
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	94.88
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	94.79
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	94.69
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	94.67
1id1_A	153	Putative potassium channel protein; RCK domain, E.	94.6
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	94.59
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	94.43
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	94.21
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	94.13
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	93.83
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	93.81
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	93.8
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	93.73
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	93.54
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	93.5
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	93.48
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	93.42
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	93.39
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	93.34
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	93.2
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	93.08
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	93.06
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	92.94
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	92.87
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	92.79
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	92.77
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	92.72
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	92.71
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	92.64
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	92.64
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	92.55
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	92.53
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	92.46
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	92.42
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	92.32
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	92.27
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	92.17
4g65_A	461	TRK system potassium uptake protein TRKA; structur	92.11
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	92.11
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	92.1
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	92.09
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	92.09
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	92.02
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	91.98
3tl2_A	315	Malate dehydrogenase; center for structural genomi	91.91
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	91.76
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	91.75
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	91.65
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	91.64
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	91.54
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	91.53
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	91.53
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	91.34
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	91.29
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	91.22
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	90.97
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	90.94
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	90.92
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	90.91
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	90.9
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	90.9
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	90.77
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	90.69
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	90.68
3qha_A	296	Putative oxidoreductase; seattle structural genomi	90.64
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	90.64
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	90.58
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	90.56
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	90.52
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	90.47
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	90.37
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	90.24
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	90.2
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	90.2
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	90.07
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	90.03
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	90.03
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	89.97
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	89.91
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	89.82
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	89.82
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	89.8
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	89.71
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	89.63
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	89.62
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	89.57
3c85_A	183	Putative glutathione-regulated potassium-efflux S	89.55
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	89.52
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	89.5
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	89.47
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	89.43
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	89.34
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	89.34
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	89.32
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	89.27
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	89.23
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	89.19
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	89.18
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	89.17
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	89.17
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	89.13
1fec_A	490	Trypanothione reductase; redox-active center, oxid	89.12
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	89.09
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	89.09
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	89.08
4ezb_A	317	Uncharacterized conserved protein; structural geno	89.07
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	89.0
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	88.99
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	88.94
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	88.76
4dna_A	463	Probable glutathione reductase; structural genomic	88.75
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	88.73
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	88.66
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	88.56
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	88.56
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	88.54
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	88.48
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	88.48
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	88.38
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	88.37
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	88.35
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	88.31
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	88.26
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	88.26
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	88.18
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	88.17
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	88.0
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	87.99
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	87.91
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	87.9
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	87.89
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	87.83
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	87.8
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	87.77
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	87.74
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	87.67
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	87.64
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	87.63
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	87.55
3dme_A	369	Conserved exported protein; structural genomics, P	87.5
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	87.49
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	87.48
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	87.46
2cul_A	232	Glucose-inhibited division protein A-related PROT	87.4
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	87.39
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	87.3
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	87.29
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	87.24
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	87.24
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	87.22
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	87.22
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	87.21
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	87.21
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	87.15
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	87.12
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	87.09
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	87.08
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	87.07
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	87.01
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	86.95
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	86.9
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	86.89
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	86.85
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	86.84
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	86.82
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	86.81
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	86.73
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	86.71
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	86.71
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	86.68
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	86.66
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	86.63
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	86.62
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	86.62
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	86.58
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	86.41
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	86.37
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	86.34
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	86.29
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	86.28
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	86.25
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	86.25
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	86.23
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	86.16
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	86.14
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	86.13
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	86.07
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	86.05
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	86.03
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	86.02
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	86.02
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	86.0
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	85.95
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	85.89
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	85.88
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	85.86
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	85.8
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	85.75
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	85.71
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	85.67
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	85.61
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	85.6

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=100.00  E-value=9.6e-41  Score=325.38  Aligned_cols=345  Identities=26%  Similarity=0.418  Sum_probs=278.9

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK  135 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (473)
                      .++||+|||||++|+++|++|+++  |.+|+||||++.+++++|+.+.|+++.+..+.......++...+.+.+.++.++
T Consensus         3 ~~~dvvIIG~G~~Gl~~A~~La~~--G~~V~vlE~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (369)
T 3dme_A            3 TDIDCIVIGAGVVGLAIARALAAG--GHEVLVAEAAEGIGTGTSSRNSEVIHAGIYYPADSLKARLCVRGKHLLYEYCAA   80 (369)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSSCSTTSSSCCEECCCCSSCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCCCCCCccCcCCccccccCccCCCCCHhHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999  999999999877899999999999999887777777778888899999999998


Q ss_pred             cCCCCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHH
Q psy7710         136 RNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEF  214 (473)
Q Consensus       136 ~~~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  214 (473)
                      .++.+...+.+.+..+. +.+.+..........+++..++++.+++...+|.+...++++.+..+.+++..++..|.+.+
T Consensus        81 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  160 (369)
T 3dme_A           81 RGVPHQRLGKLIVATSDAEASQLDSIARRAGANGVDDLQHIDGAAARRLEPALHCTAALVSPSTGIVDSHALMLAYQGDA  160 (369)
T ss_dssp             HTCCEECCCEEEEECSHHHHTTHHHHHHHHHHTTCCCCEEEEHHHHHHHCTTCCCSEEEEETTCEEECHHHHHHHHHHHH
T ss_pred             cCCCcccCCEEEEecCHHHHHHHHHHHHHHHHcCCCceeecCHHHHHHhCCCceeeeeeECCCCEEECHHHHHHHHHHHH
Confidence            88888889999988877 67777777888888888438999999999999988778899999999999999999999999


Q ss_pred             HHcCcEEEeCceEEEEEEcCCe-EEEEcCCC--cEEEcCEEEEcCCcChHHHHHhc-CCCC--CCceeeeeeEEEEeCcC
Q psy7710         215 CELGGEIRLNQQVESFKENPES-VTISTKQG--DHLESSYALVCAGLQADEMALKS-GCSL--EPAIVPFRGEYLLLNPA  288 (473)
Q Consensus       215 ~~~Gv~i~~~~~V~~i~~~~~~-v~v~~~~g--~~i~ad~VV~aaG~~s~~l~~~~-g~~~--~~~~~p~~g~~~~~~~~  288 (473)
                      +++|++|+++++|++|..++++ +.|++.+|  .+++||.||+|+|.|+..|++++ |++.  .+++.|.|||++.++.+
T Consensus       161 ~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s~~l~~~~~g~~~~~~~~i~p~rG~~~~~~~~  240 (369)
T 3dme_A          161 ESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHAPGLARRIEGIPRDSIPPEYLCKGSYFTLAGR  240 (369)
T ss_dssp             HHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGGHHHHHHTEETSCGGGSCCCEEEEEEEEECSSS
T ss_pred             HHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcchHHHHHHhcCCCccccceeeecceEEEEECCC
Confidence            9999999999999999988655 88888887  48999999999999999999999 8752  24789999999998764


Q ss_pred             cccCcccccccCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhhchHH
Q psy7710         289 KQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKE  368 (473)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (473)
                      .  ...+.+|..|...  ..++++.++.+|++++|++.++.   ++++. ..++                          
T Consensus       241 ~--~~~~~~~~~p~~~--~~~~~~~~~~~g~~~iG~t~e~~---~~~~~-~~~~--------------------------  286 (369)
T 3dme_A          241 A--PFSRLIYPVPQHA--GLGVHLTLDLGGQAKFGPDTEWI---ATEDY-TLDP--------------------------  286 (369)
T ss_dssp             C--SCSSEEEECTTCS--SCCCCEEECTTSCEEECCCCEEE---SSCCC-CCCG--------------------------
T ss_pred             C--ccCceeecCCCCC--CceEEEeCccCCcEEECCCcccc---ccccc-ccCH--------------------------
Confidence            2  2344556555432  23567777788999999987641   11111 0011                          


Q ss_pred             HHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEee---CCCCccc---------cccceeeeecCCccccchHHHHH
Q psy7710         369 MIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQAL---SSSGDLV---------DDFGVKAIHSPHTGIVDWGLVTR  436 (473)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~---t~d~~p~---------~g~~~~~g~~~~~gi~~~~~~a~  436 (473)
                          ..++.+++.+.+++|.|.+.++.+.|+|+||++.   ++|+.|+         .|+|+++||+++ |+.    .+|
T Consensus       287 ----~~~~~l~~~~~~~~P~l~~~~v~~~w~G~Rp~~~~~~~~d~~p~i~g~~~~~~~~l~~~~G~~~~-G~t----~ap  357 (369)
T 3dme_A          287 ----RRADVFYAAVRSYWPALPDGALAPGYTGIRPKISGPHEPAADFAIAGPASHGVAGLVNLYGIESP-GLT----ASL  357 (369)
T ss_dssp             ----GGGGGHHHHHHTTCTTCCTTCCEEEEEEEEEESSCTTSCCCCCEEECHHHHCCTTEEEEECCCTT-HHH----HHH
T ss_pred             ----HHHHHHHHHHHHHCCCCChhhceecceeccccccCCCCCcCCeEEecccccCCCCEEEEeCCCCc-hHh----ccH
Confidence                1134567999999999999999999999999853   2566664         378999998765 564    455


Q ss_pred             HHHHHHHhh
Q psy7710         437 VMGEEFCEL  445 (473)
Q Consensus       437 ~~g~~~~~~  445 (473)
                      .+|+.++++
T Consensus       358 ~~a~~~a~~  366 (369)
T 3dme_A          358 AIAEETLAR  366 (369)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555543

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=100.00  E-value=1e-39  Score=319.54  Aligned_cols=352  Identities=16%  Similarity=0.159  Sum_probs=265.5

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK  135 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (473)
                      .++||+|||||++|+++|++|+ +  |.+|+|||+++.+++++|+.+.|+++..+.   ......+...+.+.|.++.++
T Consensus         8 ~~~dv~IIGaGi~Gls~A~~La-~--G~~V~vlE~~~~~g~~as~~~~g~~~~~~~---~~~~~~l~~~~~~~~~~~~~~   81 (381)
T 3nyc_A            8 IEADYLVIGAGIAGASTGYWLS-A--HGRVVVLEREAQPGYHSTGRSAAHYTVAYG---TPQVRALTAASRAFFDNPPAG   81 (381)
T ss_dssp             EECSEEEECCSHHHHHHHHHHT-T--TSCEEEECSSSSTTSSGGGSCCCEECSSSS---CHHHHHHHHHHHHHHHSCCTT
T ss_pred             CcCCEEEECCcHHHHHHHHHHh-C--CCCEEEEECCCCccccccccccceeecccC---CHHHHHHHHHHHHHHHHhhhh
Confidence            4689999999999999999999 7  899999999877898999999999877532   223456667777777766555


Q ss_pred             cC-CC-CcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCccc---ceeEecCCccceeHHHHHHHH
Q psy7710         136 RN-IP-YKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG---VKAIHSPNTGIVDWGLVTRVM  210 (473)
Q Consensus       136 ~~-~~-~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~l  210 (473)
                      +. .. +...|.+.+...++.+.+....+.+...++ ..++++.+++...+|.+..   .++++.+.++.++|..++..|
T Consensus        82 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~l  160 (381)
T 3nyc_A           82 FCEHPLLSPRPEMVVDFSDDPEELRRQYESGKALVP-QMRLLDAEQACSIVPVLRRDKVFGATYDPTGADIDTDALHQGY  160 (381)
T ss_dssp             SCSSCSEEECCEEEECSSCCHHHHHHHHHHHHHHCT-TCEEECHHHHHHHSTTBCGGGCCCEEEETTCEEECHHHHHHHH
T ss_pred             hCCcccccccceEEEechHHHHHHHHHHHHHHHcCC-CcEEeCHHHHHHhCCCcccccceEEEEcCCCceECHHHHHHHH
Confidence            43 22 567788887765566677777777788888 7899999999999987764   478999999999999999999


Q ss_pred             HHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcCcc
Q psy7710         211 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQ  290 (473)
Q Consensus       211 ~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~  290 (473)
                      .+.++++|++|+++++|++|..+++++.|++.+| +++||.||+|+|+|+..|++.+|+. ..++.|.|||++.++.+..
T Consensus       161 ~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~VV~A~G~~s~~l~~~~g~~-~~~~~p~rg~~~~~~~~~~  238 (381)
T 3nyc_A          161 LRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAG-SYRAAVLVNAAGAWCDAIAGLAGVR-PLGLQPKRRSAFIFAPPPG  238 (381)
T ss_dssp             HHHHHHTTCEEESSCCCCEEEEETTEEEEECSSE-EEEESEEEECCGGGHHHHHHHHTCC-CCCCEEEEEEEEEECCCTT
T ss_pred             HHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCC-EEEcCEEEECCChhHHHHHHHhCCC-CCceeeeEEEEEEECCCcC
Confidence            9999999999999999999999888899999988 8999999999999999999999876 2479999999999876532


Q ss_pred             cCcccccccCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhhchHHHH
Q psy7710         291 HLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMI  370 (473)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (473)
                      .....  ++..  .....++|++|.. |++++|++.+....  ..+.   .++                   ...     
T Consensus       239 ~~~~~--~p~~--~~~~~~~y~~p~~-g~~~ig~~~~~~~~--~~~~---~~~-------------------~~~-----  284 (381)
T 3nyc_A          239 IDCHD--WPML--VSLDESFYLKPDA-GMLLGSPANADPVE--AHDV---QPE-------------------QLD-----  284 (381)
T ss_dssp             CCCTT--CCEE--EETTSSCEEEEET-TEEEEECCCCEECC--SSCC---CCC-------------------HHH-----
T ss_pred             CCcCc--cceE--EeCCCCEEEEeCC-CcEEEeCCcCCCCC--cccC---CCC-------------------hHH-----
Confidence            11111  0100  0011257999987 89999988653211  1110   110                   000     


Q ss_pred             hhhcchhHHHHHhhcccCCCCCCcccCCCeeceEeeCCCCccc-------cccceeeeecCCccccchHHHHHHHHHHHH
Q psy7710         371 MSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLV-------DDFGVKAIHSPHTGIVDWGLVTRVMGEEFC  443 (473)
Q Consensus       371 ~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d~~p~-------~g~~~~~g~~~~~gi~~~~~~a~~~g~~~~  443 (473)
                          .+.+++.+.+ +|.+.+.++.+.|+|+||+  |+|+.|+       .|+|+++||++| |+..++.+|..++++|.
T Consensus       285 ----~~~~~~~~~~-~~~l~~~~~~~~w~G~r~~--t~D~~p~ig~~~~~~~l~~a~G~~g~-G~~~ap~~g~~la~~i~  356 (381)
T 3nyc_A          285 ----IATGMYLIEE-ATTLTIRRPEHTWAGLRSF--VADGDLVAGYAANAEGFFWVAAQGGY-GIQTSAAMGEASAALIR  356 (381)
T ss_dssp             ----HHHHHHHHHH-HBSCCCCCCSEEEEEEEEE--CTTSCCEEEECTTSTTEEEEECCTTC-TTTTHHHHHHHHHHHHT
T ss_pred             ----HHHHHHHHHh-cCCCcccceeeeeEEcccc--CCCCCceecCCCCCCCeEEEEcCCCh-hHhhCHHHHHHHHHHHh
Confidence                1233455555 6888888999999999988  8999986       478999998875 67666666666666665


Q ss_pred             hhCCe-------Eecc-cceeec
Q psy7710         444 ELGGE-------IRLN-QQVESF  458 (473)
Q Consensus       444 ~~~~~-------~~~~-~~~~~~  458 (473)
                      ....+       +++. +..+||
T Consensus       357 g~~~~~~~~~~~~d~~~~~~~Rf  379 (381)
T 3nyc_A          357 HQPLPAHLREHGLDEAMLSPRRL  379 (381)
T ss_dssp             TCCCCHHHHTTTCCHHHHCGGGG
T ss_pred             CCCCCcccccccCcccccCcccc
Confidence            54444       2332 666666

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=100.00  E-value=2.9e-38  Score=309.45  Aligned_cols=353  Identities=18%  Similarity=0.238  Sum_probs=273.6

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK  135 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (473)
                      .++||+|||||++|+++|++|+++  |.+|+|||+. .+++++|+.+.|.++....   ......+...+.+.|.++.++
T Consensus         4 ~~~dVvIIGgGi~Gl~~A~~La~~--G~~V~lle~~-~~~~gas~~~~g~~~~~~~---~~~~~~l~~~~~~~~~~l~~~   77 (382)
T 1y56_B            4 EKSEIVVIGGGIVGVTIAHELAKR--GEEVTVIEKR-FIGSGSTFRCGTGIRQQFN---DEANVRVMKRSVELWKKYSEE   77 (382)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHT--TCCEEEECSS-STTCSHHHHCCCCCCCCCS---SHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCC-CCCCCccccccCeeeecCC---ChHHHHHHHHHHHHHHHHHHH
Confidence            568999999999999999999999  9999999998 7888899999888876532   122345677788888888887


Q ss_pred             cCCCCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcc---cceeEecCCccceeHHHHHHHHH
Q psy7710         136 RNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCK---GVKAIHSPNTGIVDWGLVTRVMG  211 (473)
Q Consensus       136 ~~~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~~~~l~  211 (473)
                      .+..+...|.+.+..++ ..+.+....+.+...|+ ..++++.+++...+|.+.   ..++++.+.++.++|..++..|.
T Consensus        78 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  156 (382)
T 1y56_B           78 YGFSFKQTGYLFLLYDDEEVKTFKRNIEIQNKFGV-PTKLITPEEAKEIVPLLDISEVIAASWNPTDGKADPFEATTAFA  156 (382)
T ss_dssp             HTCCEECCCEEEEECSHHHHHHHHHHHHHHHHTTC-CCEEECHHHHHHSSTTCCCTTCCEEEEETTCCEECHHHHHHHHH
T ss_pred             hCCCeeccceEEEEeCHHHHHHHHHHHHHHHhcCC-CcEEeCHHHHHHhCCCCCcccceEEEEcCCCeeECHHHHHHHHH
Confidence            77677788888888777 67777777777888888 789999999998888765   25788999999999999999999


Q ss_pred             HHHHHcCcEEEeCceEEEEEEcCCeEE-EEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcCcc
Q psy7710         212 EEFCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQ  290 (473)
Q Consensus       212 ~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~  290 (473)
                      +.+++.|++|+++++|++|..+++.+. |++.+| +++||.||+|+|.|+..+.+.+|+....++.|.+||++.+++...
T Consensus       157 ~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G~~s~~l~~~~g~~~~~~~~~~~g~~~~~~~~~~  235 (382)
T 1y56_B          157 VKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATNAWANLINAMAGIKTKIPIEPYKHQAVITQPIKR  235 (382)
T ss_dssp             HHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCGGGHHHHHHHHTCCSCCCCEEEEEEEEEECCCST
T ss_pred             HHHHHCCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcchhHHHHHHHcCCCcCcCCCeeEeEEEEEccCCc
Confidence            999999999999999999998888777 888888 899999999999999889998887511478999999999876432


Q ss_pred             cCcc-cccccCCCCCCCccEEEEecCCCCeEEECC-CccccccccCcccccchhHHHhhhccCCcchhccchhhhhchHH
Q psy7710         291 HLVR-GNIYPVPDPNFPFLGVHFTPRMDGSVWLGP-NAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKE  368 (473)
Q Consensus       291 ~~~~-~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (473)
                      . .. ..++..   .  ..++|++|..+| +++|+ +...   ..+++. ..+.                          
T Consensus       236 ~-~~~~~~~~~---~--~~~~y~~p~~~g-~~iG~~~~~~---~~~~~~-~~~~--------------------------  278 (382)
T 1y56_B          236 G-TINPMVISF---K--YGHAYLTQTFHG-GIIGGIGYEI---GPTYDL-TPTY--------------------------  278 (382)
T ss_dssp             T-SSCSEEEES---T--TTTEEEECCSSS-CCEEECSCCB---SSCCCC-CCCH--------------------------
T ss_pred             c-cCCCeEEec---C--CCeEEEEEeCCe-EEEecCCCCC---CCCCCC-CCCH--------------------------
Confidence            1 11 111111   0  125899999888 88884 3211   111111 0010                          


Q ss_pred             HHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEeeCCCCccc-------cccceeeeecCCccccchHHHHHHHHHH
Q psy7710         369 MIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLV-------DDFGVKAIHSPHTGIVDWGLVTRVMGEE  441 (473)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d~~p~-------~g~~~~~g~~~~~gi~~~~~~a~~~g~~  441 (473)
                          ...+.+++.+.+++|.+.+.++.+.|+|+||+  |+|+.|+       .|+|+++||++| |+..++.+|..++++
T Consensus       279 ----~~~~~l~~~~~~~~p~l~~~~~~~~~~g~r~~--t~d~~p~ig~~~~~~~~~~~~G~~g~-G~~~a~~~g~~la~~  351 (382)
T 1y56_B          279 ----EFLREVSYYFTKIIPALKNLLILRTWAGYYAK--TPDSNPAIGRIEELNDYYIAAGFSGH-GFMMAPAVGEMVAEL  351 (382)
T ss_dssp             ----HHHHHHHHHHHHHCGGGGGSEEEEEEEEEEEE--CTTSCCEEEEESSSBTEEEEECCTTC-HHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHhCCCcCCCCceEEEEecccc--CCCCCcEeccCCCCCCEEEEEecCcc-hHhhhHHHHHHHHHH
Confidence                01345568899999999999999999999988  7999986       478999998875 676666667777777


Q ss_pred             HHhhCCeEec-ccceeeccc
Q psy7710         442 FCELGGEIRL-NQQVESFKE  460 (473)
Q Consensus       442 ~~~~~~~~~~-~~~~~~~~~  460 (473)
                      +.......++ .++.+||..
T Consensus       352 i~~~~~~~~~~~~~~~Rf~~  371 (382)
T 1y56_B          352 ITKGKTKLPVEWYDPYRFER  371 (382)
T ss_dssp             HHHSSCSSCGGGGCGGGTTT
T ss_pred             HhCCCCcCcccccCHhhhcc
Confidence            6655444433 377788863

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=100.00  E-value=4.4e-37  Score=301.80  Aligned_cols=364  Identities=18%  Similarity=0.203  Sum_probs=268.5

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccC--cccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHH
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGM--HQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFD  134 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~--~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (473)
                      ++||+|||||++|+++|++|+++  |.+|+|||++ ..++  ++|..+.++++..+  ........+...+.+.|.++.+
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~--G~~V~vie~~-~~~~~~g~s~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~l~~   77 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQ--GVKTLLVDAF-DPPHTNGSHHGDTRIIRHAY--GEGREYVPLALRSQELWYELEK   77 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSS-CSSCSSSSSCSSEEEECSSC--TTCGGGHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhC--CCeEEEEeCC-CCCCCCCCCCCcchhhhhhh--cCCchHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999  9999999998 5666  77777877776543  2222345677788888888888


Q ss_pred             hcCCC-CcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcc---cceeEecCCccceeHHHHHHHH
Q psy7710         135 KRNIP-YKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCK---GVKAIHSPNTGIVDWGLVTRVM  210 (473)
Q Consensus       135 ~~~~~-~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~~~~l  210 (473)
                      +.+.+ +...|.+.+...++.+.+....+.+...|+ ..++++.+++.+.+|.+.   ..++++.+.++.++|..++..|
T Consensus        78 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l  156 (389)
T 2gf3_A           78 ETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSL-TVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAY  156 (389)
T ss_dssp             HCSSCCEECCCEEEEEETTCCHHHHHHHHHHHHTTC-CCEEEETHHHHHHSTTCCCCTTEEEEEETTCEEEEHHHHHHHH
T ss_pred             HhCCcceeecceEEEcCCCchHHHHHHHHHHHHcCC-CcEEcCHHHHHHhCCCcccCCCceEEEeCCCcEEeHHHHHHHH
Confidence            77754 567788887765333345556666777888 688999999988888654   2578899999999999999999


Q ss_pred             HHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcCcc
Q psy7710         211 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQ  290 (473)
Q Consensus       211 ~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~  290 (473)
                      .+.+++.|++++++++|++|..+++++.|++.+| +++||.||+|+|.|+..+++.+|+.  .++.|.+||++.+++...
T Consensus       157 ~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~~l~~~~g~~--~pl~~~rg~~~~~~~~~~  233 (389)
T 2gf3_A          157 RELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWNSKLLSKLNLD--IPLQPYRQVVGFFESDES  233 (389)
T ss_dssp             HHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGHHHHGGGGTEE--CCCEEEEEEEEEECCCHH
T ss_pred             HHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCCC-EEEeCEEEEecCccHHHHhhhhccC--CceEEEEEEEEEEecCcc
Confidence            9999999999999999999998877888888887 8999999999999999998888754  378999999999986531


Q ss_pred             cCcccccccCCCCCCCccEEEEecCCCC-eEEECCCcccc-ccccCcccccchhHHHhhhccCCcchhccchhhhhchHH
Q psy7710         291 HLVRGNIYPVPDPNFPFLGVHFTPRMDG-SVWLGPNAVLA-FKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKE  368 (473)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~p~~~g-~~~iG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (473)
                      .......++......+...+|++|..+| ++++|++.... ..+++.+.   .+.                 .+...   
T Consensus       234 ~~~~~~~~p~~~~~~~~~~~y~~p~~~g~~~~iG~~~~~~~~~~~~~~~---~~~-----------------~~~~~---  290 (389)
T 2gf3_A          234 KYSNDIDFPGFMVEVPNGIYYGFPSFGGCGLKLGYHTFGQKIDPDTINR---EFG-----------------VYPED---  290 (389)
T ss_dssp             HHBGGGTCCEEEEEETTEEEEEECBSTTCCEEEEESSCCEECCTTTCCC---CTT-----------------SSHHH---
T ss_pred             cccccccCCEEEEeCCCCcEEEcCCCCCCcEEEEEcCCCCccCcccccC---ccC-----------------CCHHH---
Confidence            1000000010000000125799999888 89999764211 01111100   000                 00001   


Q ss_pred             HHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEeeCCCCccc-------cccceeeeecCCccccchHHHHHHHHHH
Q psy7710         369 MIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLV-------DDFGVKAIHSPHTGIVDWGLVTRVMGEE  441 (473)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d~~p~-------~g~~~~~g~~~~~gi~~~~~~a~~~g~~  441 (473)
                            .+.+++.+.++||.+.+ ++.+.|+|+||+  |+|+.|+       .|+|+++||++| |+..++.+|..++++
T Consensus       291 ------~~~l~~~~~~~~P~l~~-~~~~~w~g~r~~--t~D~~p~ig~~~~~~~l~~a~G~~g~-G~~~ap~~g~~la~~  360 (389)
T 2gf3_A          291 ------ESNLRAFLEEYMPGANG-ELKRGAVCMYTK--TLDEHFIIDLHPEHSNVVIAAGFSGH-GFKFSSGVGEVLSQL  360 (389)
T ss_dssp             ------HHHHHHHHHHHCGGGCS-CEEEEEEEEEEE--CTTSCCEEEEETTEEEEEEEECCTTC-CGGGHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHhCCCCCC-CceEEEEEEecc--CCCCCeEEccCCCCCCEEEEECCccc-cccccHHHHHHHHHH
Confidence                  24556899999999987 899999999987  8999986       477999999876 676777777777777


Q ss_pred             HHhhCCeEec-ccceeecccCc
Q psy7710         442 FCELGGEIRL-NQQVESFKENP  462 (473)
Q Consensus       442 ~~~~~~~~~~-~~~~~~~~~~~  462 (473)
                      +.....+.++ .++.+||....
T Consensus       361 i~~~~~~~~~~~~~~~Rf~~~~  382 (389)
T 2gf3_A          361 ALTGKTEHDISIFSINRPALKE  382 (389)
T ss_dssp             HHHSCCSSCCGGGCTTCGGGTC
T ss_pred             HcCCCCCCCccccccccccccc
Confidence            7766555554 48888886443

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=100.00  E-value=5.1e-36  Score=295.84  Aligned_cols=351  Identities=16%  Similarity=0.179  Sum_probs=273.9

Q ss_pred             CCcccEEEEcCChHHHHHHHHHHh-cCCC-CeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHH
Q psy7710          55 PALYDVVVVGGGIVGVATARELKL-NYPK-MKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEY  132 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~A~~L~~-~~~G-~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (473)
                      +.++||+|||||++|+++|++|++ +  | .+|+|||++. +++++|+.+.|.++.....   .....+...+.+.|.++
T Consensus        19 ~~~~dVvIIG~G~~Gl~~A~~La~~~--G~~~V~vlE~~~-~~~gas~~~~g~~~~~~~~---~~~~~l~~~~~~~~~~~   92 (405)
T 2gag_B           19 KKSYDAIIVGGGGHGLATAYFLAKNH--GITNVAVLEKGW-LAGGNMARNTTIIRSNYLW---DESAGIYEKSLKLWEQL   92 (405)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHHH--CCCCEEEECSSS-TTCSGGGTSCCCBCCCCSS---HHHHHHHHHHHHHHHHH
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHhc--CCCcEEEEeCCC-CCCCcccccCceeeecCCC---HHHHHHHHHHHHHHHHH
Confidence            357899999999999999999999 9  8 9999999994 8889999999988765422   22345667788888888


Q ss_pred             HHhcCCC--CcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcc--------cceeEecCCccce
Q psy7710         133 FDKRNIP--YKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCK--------GVKAIHSPNTGIV  201 (473)
Q Consensus       133 ~~~~~~~--~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~--------~~~~~~~~~~~~~  201 (473)
                      .++.+++  +...|.+.+...+ ..+.+....+.+...|. ..++++.+++...+|.+.        ..++++.+.++.+
T Consensus        93 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  171 (405)
T 2gag_B           93 PEDLEYDFLFSQRGVLNLAHTLGDVRESVRRVEANKLNGV-DAEWLDPSQVKEACPIINTSDDIRYPVMGATWQPRAGIA  171 (405)
T ss_dssp             HHHTTCCCCCBCCCEEEEECSHHHHHHHHHHHHHHHTBTC-CCEEECHHHHHHHCTTSCCSTTSSSCCCEEEEETTCBBC
T ss_pred             HHHhCCCcCEecccEEEEEcCHHHHHHHHHHHHHHHhcCC-CceEeCHHHHHhhCCCCcccccccccceeEEEeCCCccC
Confidence            8877754  6788999888877 67777777888888888 789999999988888653        2678999999999


Q ss_pred             eHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCe-EEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeee
Q psy7710         202 DWGLVTRVMGEEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRG  280 (473)
Q Consensus       202 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g  280 (473)
                      +|..++..|.+.+++.|++++++++|++|..+++. +.|++.+| +++||.||+|+|.|+..+.+.+|+..  ++.|.++
T Consensus       172 ~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s~~l~~~~g~~~--~~~~~~~  248 (405)
T 2gag_B          172 KHDHVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGAGHSSVLAEMAGFEL--PIQSHPL  248 (405)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCGGGHHHHHHHHTCCC--CEEEEEE
T ss_pred             CHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCchhHHHHHHHcCCCC--Cccccce
Confidence            99999999999999999999999999999987665 56888888 89999999999999988999998764  8899999


Q ss_pred             EEEEeCcCcccCcccccccCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchhccch
Q psy7710         281 EYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLK  360 (473)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (473)
                      |++.+++.... ....++.   .   ..++|++|..+|++++|++.+..   .+++.. .+.                  
T Consensus       249 ~~~~~~~~~~~-~~~~~~~---~---~~~~y~~p~~~g~~~ig~~~~~~---~~~~~~-~~~------------------  299 (405)
T 2gag_B          249 QALVSELFEPV-HPTVVMS---N---HIHVYVSQAHKGELVMGAGIDSY---NGYGQR-GAF------------------  299 (405)
T ss_dssp             EEEEEEEBCSC-CCSEEEE---T---TTTEEEEECTTSEEEEEEEECSS---CCCSSC-CCT------------------
T ss_pred             eEEEecCCccc-cCceEEe---C---CCcEEEEEcCCCcEEEEeccCCC---CccccC-CCH------------------
Confidence            99988643211 1111111   0   12579999888999999875421   111100 000                  


Q ss_pred             hhhhchHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEeeCCCCcccc------ccceeeeecCCccccchHHH
Q psy7710         361 YTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVD------DFGVKAIHSPHTGIVDWGLV  434 (473)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d~~p~~------g~~~~~g~~~~~gi~~~~~~  434 (473)
                                  ...+.+++.+.+++|.+.+.++.+.|+|+||+  ++|+.|++      |+|+++|++++ |+..++.+
T Consensus       300 ------------~~~~~l~~~~~~~~p~l~~~~~~~~w~g~~~~--t~d~~p~ig~~~~~~l~~~~G~~g~-G~~~a~~~  364 (405)
T 2gag_B          300 ------------HVIQEQMAAAVELFPIFARAHVLRTWGGIVDT--TMDASPIISKTPIQNLYVNCGWGTG-GFKGTPGA  364 (405)
T ss_dssp             ------------HHHHHHHHHHHHHCGGGGGCEECEEEEEEEEE--ETTSCCEEEECSSBTEEEEECCGGG-CSTTHHHH
T ss_pred             ------------HHHHHHHHHHHHhCCccccCCcceEEeecccc--CCCCCCEecccCCCCEEEEecCCCc-hhhHHHHH
Confidence                        01245568899999999988999999999988  79998863      68899998865 67777778


Q ss_pred             HHHHHHHHHhhCCeEe-cccceeecc
Q psy7710         435 TRVMGEEFCELGGEIR-LNQQVESFK  459 (473)
Q Consensus       435 a~~~g~~~~~~~~~~~-~~~~~~~~~  459 (473)
                      |..+++++.......+ ..++.+||+
T Consensus       365 g~~la~~i~g~~~~~~~~~~~~~R~~  390 (405)
T 2gag_B          365 GFTLAHTIANDEPHELNKPFSLERFE  390 (405)
T ss_dssp             HHHHHHHHHHTSCCTTTTTSCSTHHH
T ss_pred             HHHHHHHHhCCCCCccccccCcchhc
Confidence            8888888776544443 337888886

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=100.00  E-value=9e-37  Score=298.82  Aligned_cols=346  Identities=19%  Similarity=0.202  Sum_probs=260.8

Q ss_pred             CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHH
Q psy7710          55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFD  134 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (473)
                      +.++||+|||||++|+++|++|+++  |.+|+|||+. .+++++|+.+.|++.+...+........+...+.+.|.++.+
T Consensus        15 ~~~~dvvIIGgG~~Gl~~A~~La~~--G~~V~llE~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   91 (382)
T 1ryi_A           15 KRHYEAVVIGGGIIGSAIAYYLAKE--NKNTALFESG-TMGGRTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGE   91 (382)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSS-STTTTHHHHCCCBCCGGGSCSSCSHHHHHHHHHHHHTTTHHH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhC--CCcEEEEeCC-CCCcccchhcCceeccCccCCCCcHHHHHHHHHHHHHHHHHH
Confidence            3578999999999999999999999  9999999998 688888999999988766543333456677777777766554


Q ss_pred             hc----CC--CCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCccc--ceeEecCCccceeHHH
Q psy7710         135 KR----NI--PYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG--VKAIHSPNTGIVDWGL  205 (473)
Q Consensus       135 ~~----~~--~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~  205 (473)
                      .+    ++  .+...|.+.+..++ +.+.+....+    . . ..++++.+++...+|.+..  .++++.+.++.++|..
T Consensus        92 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~----~-~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  165 (382)
T 1ryi_A           92 ELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDD----L-D-SVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYF  165 (382)
T ss_dssp             HHHHHHCCCCCCBCCCEEEEESSHHHHHHHHTTTT----S-T-TEEEEEHHHHHHHCTTSCTTCCEEEEETTCCBCCHHH
T ss_pred             HHHHhhCCCcCeeecceEEEEeCHHHHHHHHHHhh----c-C-CeEEECHHHHHHhCCCCCcccceEEEeCCCeEEcHHH
Confidence            43    43  46778888877665 3333322211    1 2 6788999999888887543  5788999999999999


Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEe
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLL  285 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~  285 (473)
                      +...|.+.+++.|++++++++|++|..+++++.|++.+| +++||.||+|+|.|+..+++.+|+.  .++.|.+|+++.+
T Consensus       166 ~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~s~~l~~~~~~~--~~~~~~~g~~~~~  242 (382)
T 1ryi_A          166 VCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSGMFFKQLGLN--NAFLPVKGECLSV  242 (382)
T ss_dssp             HHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTHHHHHHTTCC--CCCEEEEEEEEEE
T ss_pred             HHHHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChhHHHHHHhcCCC--CceeccceEEEEE
Confidence            999999999999999999999999998887788888888 8999999999999998899988875  4789999999988


Q ss_pred             CcCcccCcccccccCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhhc
Q psy7710         286 NPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYG  365 (473)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (473)
                      ++.... ....++.        .+.|++|..+|++++|++.+..    +++.. .+.                       
T Consensus       243 ~~~~~~-~~~~~~~--------~~~~~~p~~~g~~~vG~~~~~~----~~~~~-~~~-----------------------  285 (382)
T 1ryi_A          243 WNDDIP-LTKTLYH--------DHCYIVPRKSGRLVVGATMKPG----DWSET-PDL-----------------------  285 (382)
T ss_dssp             ECCSSC-CCSEEEE--------TTEEEEECTTSEEEEECCCEET----CCCCS-CCH-----------------------
T ss_pred             CCCCCC-ccceEEc--------CCEEEEEcCCCeEEEeeccccc----CCCCC-CCH-----------------------
Confidence            655321 1111111        2479999988999999985432    11110 000                       


Q ss_pred             hHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEeeCCCCcccc-------ccceeeeecCCccccchHHHHHHH
Q psy7710         366 SKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLVD-------DFGVKAIHSPHTGIVDWGLVTRVM  438 (473)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d~~p~~-------g~~~~~g~~~~~gi~~~~~~a~~~  438 (473)
                             +..+.+++.+.+++|.+...++.+.|+|+||+  ++|+.|+.       |+|+++|++++ |+..++.+|..+
T Consensus       286 -------~~~~~l~~~~~~~~p~l~~~~~~~~w~g~~~~--t~d~~p~ig~~~~~~~l~~~~G~~g~-G~~~a~~~g~~l  355 (382)
T 1ryi_A          286 -------GGLESVMKKAKTMLPAIQNMKVDRFWAGLRPG--TKDGKPYIGRHPEDSRILFAAGHFRN-GILLAPATGALI  355 (382)
T ss_dssp             -------HHHHHHHHHHHHHCGGGGGSEEEEEEEEEEEE--CSSSCCEEEEETTEEEEEEEECCSSC-TTTTHHHHHHHH
T ss_pred             -------HHHHHHHHHHHHhCCCcCCCceeeEEEEeccc--CCCCCcEeccCCCcCCEEEEEcCCcc-hHHHhHHHHHHH
Confidence                   01245568999999999988999999999988  79999873       57889998775 676666666666


Q ss_pred             HHHHHhhCCeEec--ccceeecc
Q psy7710         439 GEEFCELGGEIRL--NQQVESFK  459 (473)
Q Consensus       439 g~~~~~~~~~~~~--~~~~~~~~  459 (473)
                      +++|.....+.++  .+..+||.
T Consensus       356 a~~i~~~~~~~~~~~~~~~~Rf~  378 (382)
T 1ryi_A          356 SDLIMNKEVNQDWLHAFRIDRKE  378 (382)
T ss_dssp             HHHHTTCCCCHHHHHHTCSCCC-
T ss_pred             HHHHhCCCCCchhhcCCChhhcc
Confidence            6666655444443  36777775

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=100.00  E-value=6.1e-35  Score=284.79  Aligned_cols=353  Identities=16%  Similarity=0.176  Sum_probs=248.4

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccC-cccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGM-HQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK  135 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~-~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (473)
                      ++||+|||||++|+++|++|+++  |.+|+|||+....++ +++..+.+++...+  ........+...+.+.|.++. +
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~--G~~V~vle~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~l~-~   76 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRA--GLNVLMTDAHMPPHQHGSHHGDTRLIRHAY--GEGEKYVPLVLRAQMLWDELS-R   76 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHT--TCCEEEECSSCSSSSSSSCCSSEEEECSSC--TTCGGGHHHHHHHHHHHHHHH-T
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCCCCCCCCCCccceeeecc--CCCchHHHHHHHHHHHHHHHH-H
Confidence            47999999999999999999999  999999999843322 23333444444322  222234567778888888887 6


Q ss_pred             cCC---CCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcc---cceeEecCCccceeHHHHHHH
Q psy7710         136 RNI---PYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCK---GVKAIHSPNTGIVDWGLVTRV  209 (473)
Q Consensus       136 ~~~---~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~~~~  209 (473)
                      .++   .+...|.+.+...+ .+.+....+.+...|+ ..++++.+++...+|.+.   ..++++.+.+++++|..++..
T Consensus        77 ~~~~~~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~l~~~  154 (372)
T 2uzz_A           77 HNEDDPIFVRSGVINLGPAD-STFLANVAHSAEQWQL-NVEKLDAQGIMARWPEIRVPDNYIGLFETDSGFLRSELAIKT  154 (372)
T ss_dssp             TCSSSCSEECCCEEEEEETT-CHHHHHHHHHHHHTTC-CEEEEEHHHHHHHCTTCCCCTTEEEEEESSCEEEEHHHHHHH
T ss_pred             hCCCccceeeeceEEEeCCC-cHHHHHHHHHHHHcCC-CcEecCHHHHHhhCCCccCCCCceEEEeCCCcEEcHHHHHHH
Confidence            665   35678888777654 2345556666777888 789999999998888643   267899999999999999999


Q ss_pred             HHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcCc
Q psy7710         210 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAK  289 (473)
Q Consensus       210 l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~~  289 (473)
                      |.+.+++.|++++++++|++|..+++++.|++.+| +++||.||+|+|.|+..|++      +.++.|+|||++.+..+.
T Consensus       155 l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~a~~vV~a~G~~s~~l~~------~l~~~p~rg~~~~~~~~~  227 (372)
T 2uzz_A          155 WIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADG-EYQAKKAIVCAGTWVKDLLP------ELPVQPVRKVFAWYQADG  227 (372)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-EEEEEEEEECCGGGGGGTST------TCCCEEEECCEEEECCCG
T ss_pred             HHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCC-eEEcCEEEEcCCccHHhhcc------ccCceEEEEEEEEEEecc
Confidence            99999999999999999999998877788999888 79999999999999977764      237899999998887643


Q ss_pred             ccCcccccccCCCCCCC-ccEEEEecCCCCeEEECCCcccc-ccccCcccccchhHHHhhhccCCcchhccchhhhhchH
Q psy7710         290 QHLVRGNIYPVPDPNFP-FLGVHFTPRMDGSVWLGPNAVLA-FKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSK  367 (473)
Q Consensus       290 ~~~~~~~~~~~~~~~~~-~~~~~~~p~~~g~~~iG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (473)
                      ...... ..+......+ ...+|++|+.++.+++|++..-. .+... +..+.++                   +     
T Consensus       228 ~~~~~~-~~p~~~~~~~~~~~~y~~p~~~~~~~iG~~~~g~~~~~~~-~~~~~~~-------------------~-----  281 (372)
T 2uzz_A          228 RYSVKN-KFPAFTGELPNGDQYYGFPAENDALKIGKHNGGQVIHSAD-ERVPFAE-------------------V-----  281 (372)
T ss_dssp             GGSTTT-TCCEEEEECTTCCEEEEECCSSSCEEEEESSCCEECCSGG-GCCCTTT-------------------S-----
T ss_pred             ccCccc-cCCEEEEecCCCCeEEecCCCCCeEEEEecCCCCccCChh-hccCCCC-------------------C-----
Confidence            211000 0010000000 12578889888899999864210 00000 0000000                   0     


Q ss_pred             HHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEeeCCCCccc-------cccceeeeecCCccccchHHHHHHHHH
Q psy7710         368 EMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLV-------DDFGVKAIHSPHTGIVDWGLVTRVMGE  440 (473)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d~~p~-------~g~~~~~g~~~~~gi~~~~~~a~~~g~  440 (473)
                          ....+.+++.+.++||.+.  ++...|+|+||+  |+|+.|+       .|+|+++||++| |+..++.+|..+++
T Consensus       282 ----~~~~~~l~~~~~~~~P~l~--~~~~~~~g~r~~--t~d~~p~ig~~~~~~~l~~~~G~~g~-G~~~ap~~g~~la~  352 (372)
T 2uzz_A          282 ----VSDGSEAFPFLRNVLPGIG--CCLYGAACTYDN--SPDEDFIIDTLPGHDNTLLITGLSGH-GFKFASVLGEIAAD  352 (372)
T ss_dssp             ----TTGGGSSHHHHHHHSCSCC--CEEEECCCEEEE--CTTSCCCEEEETTEEEEEEECCCCSC-CGGGHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHCCCCC--ccceeeEEeecc--CCCCCeEEecCCCCCCEEEEeCCCcc-chhccHHHHHHHHH
Confidence                0113455689999999987  788999999987  8999987       378999999876 57655566666666


Q ss_pred             HHHhhCCeEe-cccceeec
Q psy7710         441 EFCELGGEIR-LNQQVESF  458 (473)
Q Consensus       441 ~~~~~~~~~~-~~~~~~~~  458 (473)
                      +|.....+++ ..+..+||
T Consensus       353 ~i~~~~~~~~~~~~~~~Rf  371 (372)
T 2uzz_A          353 FAQDKKSDFDLTPFRLSRF  371 (372)
T ss_dssp             HHTTCCCSSCCGGGCSTTC
T ss_pred             HHhCCCCCCCccccCcCCC
Confidence            6554444444 33666665

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=100.00  E-value=6.3e-36  Score=298.95  Aligned_cols=361  Identities=16%  Similarity=0.153  Sum_probs=256.7

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCC-CeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPK-MKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFD  134 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G-~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (473)
                      .++||+|||||++|+++|++|+++  | .+|+|||+...++.++|+.+.|+++....   ......+...+.+.|.++.+
T Consensus        22 ~~~dVvIIGgGiaGls~A~~La~~--G~~~V~vlE~~~~~~~g~S~~~~g~i~~~~~---~~~~~~l~~~~~~~~~~l~~   96 (448)
T 3axb_A           22 PRFDYVVVGAGVVGLAAAYYLKVW--SGGSVLVVDAGHAPGSGDSGRSMAAFRTFFS---STMNRLVAGSTVRLFEDAQR   96 (448)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHH--HCSCEEEEESSSSTTCSGGGSSCCEEECCCS---SHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhC--CCCcEEEEccCCCCCCCcccCCCcEecccCC---CHHHHHHHHHHHHHHHHHHh
Confidence            468999999999999999999999  8 89999999447888999999999887532   22345677788888888877


Q ss_pred             hcCC--CCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcc-----eee-----------CHHHHHhhcCCcccceeEec
Q psy7710         135 KRNI--PYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDV-----RLV-----------SAEEIKTIEPYCKGVKAIHS  195 (473)
Q Consensus       135 ~~~~--~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~-----~~l-----------~~~~~~~~~p~~~~~~~~~~  195 (473)
                      . ++  .+...|.+. ..+. ..+.+....+.+...|. ..     +++           +.+++.. .......++++.
T Consensus        97 ~-g~~~~~~~~g~l~-~~~~~~~~~~~~~~~~~~~~g~-~~~p~~~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~  172 (448)
T 3axb_A           97 G-GEDLGLVKSGYLF-VYDRERWREVEEPLREAGEEGR-DYLIIPPEELERRLGMNTRVSDGEEAEV-LGVGDVEGAVLI  172 (448)
T ss_dssp             T-TCCCCCBCCCEEE-EECHHHHHHHHHHHTTSCCBTT-TEEEECHHHHHHHHCCCCCCTTSSHHHH-HTCCCCCEEEEE
T ss_pred             c-CcccccccCCEEE-EcCHHHHHHHHHHHHHHHhhCC-CccccchhhhhhcccccccCCCHHHHHh-ccCCCceEEEEe
Confidence            6 53  467778887 5554 44444444444444555 44     556           6666655 111123567888


Q ss_pred             CCccceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEE---------------cCCeE-EEEcCCCcEE--EcCEEEEcCC
Q psy7710         196 PNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKE---------------NPESV-TISTKQGDHL--ESSYALVCAG  257 (473)
Q Consensus       196 ~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~---------------~~~~v-~v~~~~g~~i--~ad~VV~aaG  257 (473)
                      +.++.++|..++..|.+.+++.|++|+++++|++|..               +++++ .|++.+| ++  +||.||+|+|
T Consensus       173 ~~~~~~~~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG  251 (448)
T 3axb_A          173 RSAGFLDAEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAG  251 (448)
T ss_dssp             SSEEECCHHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCG
T ss_pred             CCCeEEcHHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCC
Confidence            9999999999999999999999999999999999987               55554 6888888 78  9999999999


Q ss_pred             cChHHHHHhcCCCCCCceeeeeeEEEEeCcCcccCccccccc---CCCCCCCc----cEEEEecCCC-CeEEECCCcccc
Q psy7710         258 LQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLVRGNIYP---VPDPNFPF----LGVHFTPRMD-GSVWLGPNAVLA  329 (473)
Q Consensus       258 ~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~----~~~~~~p~~~-g~~~iG~~~~~~  329 (473)
                      +|+..|++.+|+.  .++.|.|||++.+++.... ....++.   .+...+|.    .++|++|+.+ |++++|++.+..
T Consensus       252 ~~s~~l~~~~g~~--~~~~p~rg~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~y~~p~~~~g~~~iG~~~~~~  328 (448)
T 3axb_A          252 VWSNRLLNPLGID--TFSRPKKRMVFRVSASTEG-LRRIMREGDLAGAGAPPLIILPKRVLVRPAPREGSFWVQLSDNLG  328 (448)
T ss_dssp             GGHHHHHGGGTCC--CSEEEEEEEEEEEECCSHH-HHHHHHHCCTTSSSSCCEEEETTTEEEEEETTTTEEEEEECCCTT
T ss_pred             cCHHHHHHHcCCC--CcccccceEEEEeCCcccc-cccccccccccccCCCceEEcCCceEEeecCCCCeEEEecCCccc
Confidence            9999999998875  4899999999999765321 1000000   00000111    3589999988 899999986531


Q ss_pred             ccccCcccccchhHHHhhhccCCcchhccchhhhhchHHHHhhhc-chhHHHHHhhcccCCCCCCcccCCCeeceEeeCC
Q psy7710         330 FKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEMIMSWF-PSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSS  408 (473)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~  408 (473)
                       .+++++..+ .++                            ... .+.+++.+.++||.+.+.++.+.|+|+||+. |+
T Consensus       329 -~~~~~~~~~-~~~----------------------------~~~~~~~l~~~~~~~~P~l~~~~~~~~w~G~r~~~-t~  377 (448)
T 3axb_A          329 -RPFALEEDP-QPE----------------------------EHYYSLAILPILSLYLPQFQDAYPSGGWAGHYDIS-FD  377 (448)
T ss_dssp             -SCBCCCSSC-CCC----------------------------HHHHHHHTHHHHHHHCGGGTTCCCSEEEEEEEEEE-TT
T ss_pred             -CCccccccc-CCC----------------------------hHHHHHHHHHHHHHhCcCcccCCcccceEEEeccc-cC
Confidence             011111000 000                            001 2355689999999999999999999999762 68


Q ss_pred             CCcccc-----ccceeeeecCCccccchHHHHHHHHHHHHhhCCe-------Eecc-cc-eee-cccC
Q psy7710         409 SGDLVD-----DFGVKAIHSPHTGIVDWGLVTRVMGEEFCELGGE-------IRLN-QQ-VES-FKEN  461 (473)
Q Consensus       409 d~~p~~-----g~~~~~g~~~~~gi~~~~~~a~~~g~~~~~~~~~-------~~~~-~~-~~~-~~~~  461 (473)
                      |+.|++     |+|+++|+++| |+..++.+|..+++++.....+       +++. +. ..| |...
T Consensus       378 d~~p~ig~~~~~l~~a~G~~g~-G~~~ap~~g~~la~~i~~~~~~~~~~~~~~~~~~~~~~~R~f~~~  444 (448)
T 3axb_A          378 ANPVVFEPWESGIVVAAGTSGS-GIMKSDSIGRVAAAVALGMESVELYGGVEMPVKWMGLEGRRYEQE  444 (448)
T ss_dssp             SSCEEECGGGCSEEEEECCTTC-CGGGHHHHHHHHHHHHTTCSEEECTTSCEEEGGGGSSTTCCCCCC
T ss_pred             CCCcEeeecCCCEEEEECCCch-hHhHhHHHHHHHHHHHcCCCcccccccceecHhHcCccccccccC
Confidence            998874     78999999876 5766666666666666554444       4443 55 667 7543

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=100.00  E-value=5.8e-34  Score=280.27  Aligned_cols=359  Identities=13%  Similarity=0.060  Sum_probs=255.5

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccC--cccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGM--HQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYF  133 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~--~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (473)
                      .++||+|||||++|+++|++|+++  |.+|+||||.. .+.  ++|+.+.+++...+  . ......+...+.+.|.++.
T Consensus         3 ~~~DVvIIGaG~~Gl~~A~~La~~--G~~V~vlE~~~-~~~~~gas~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~l~   76 (397)
T 2oln_A            3 ESYDVVVVGGGPVGLATAWQVAER--GHRVLVLERHT-FFNENGGTSGAERHWRLQY--T-QEDLFRLTLETLPLWRALE   76 (397)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSC-TTCSSSSCCSSEEEECSCC--S-SHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCC-CCCCCCCCCCcCeEEEecc--C-cchhhhHHHHHHHHHHHHH
Confidence            358999999999999999999999  99999999984 554  66666666664322  1 1234556677778888887


Q ss_pred             HhcCCC-CcccCeEEEEeCc---ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcc---cceeEecCCccceeHHHH
Q psy7710         134 DKRNIP-YKKCGKLIVALNE---QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCK---GVKAIHSPNTGIVDWGLV  206 (473)
Q Consensus       134 ~~~~~~-~~~~g~l~~~~~~---~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~  206 (473)
                      ++.+.+ +...|.+.+...+   ..+.+....+.+...|+ ..++++.+++...+|.+.   ..++++.+..+.++|..+
T Consensus        77 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~  155 (397)
T 2oln_A           77 SRCERRLIHEIGSLWFGDTDVVTNEGQISGTAAMMDKLSV-RYEWLKATDIERRFGFRGLPRDYEGFLQPDGGTIDVRGT  155 (397)
T ss_dssp             HHHTCCCEECCCEEEEECSSCCBTTBCHHHHHHHHHHTTC-CCEEEEHHHHHHHHCCCSCCTTCEEEEETTCEEEEHHHH
T ss_pred             HHhCccHHHHCCcEEEcCCCccchhHHHHHHHHHHHHcCC-CceecCHHHHHhhCcCccCCCceeEEEcCCCCEEcHHHH
Confidence            776654 4667777776543   12456666677777888 678889888888777654   367889999999999999


Q ss_pred             HHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeC
Q psy7710         207 TRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLN  286 (473)
Q Consensus       207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~  286 (473)
                      +..|.+.+++.|++|+++++|++|..+++++.|+++++ +++||.||+|+|+|+..+++.+|+.  .++.|.+++++.++
T Consensus       156 ~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~g-~i~a~~VV~A~G~~s~~l~~~~g~~--~p~~~~~~~~~~~~  232 (397)
T 2oln_A          156 LAALFTLAQAAGATLRAGETVTELVPDADGVSVTTDRG-TYRAGKVVLACGPYTNDLLEPLGAR--LAYSVYEMAIAAYR  232 (397)
T ss_dssp             HHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEESSC-EEEEEEEEECCGGGHHHHHGGGTCC--CCEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEECCC-EEEcCEEEEcCCcChHHHhhhcCCC--CCeeEEEEEEEEEe
Confidence            99999999999999999999999998888888888877 8999999999999998999988875  47999999999886


Q ss_pred             cCcccC-cccccccCCCCCCCccEEEEecCCCC----eEEECCCcccc--ccccCcccccchhHHHhhhccCCcchhccc
Q psy7710         287 PAKQHL-VRGNIYPVPDPNFPFLGVHFTPRMDG----SVWLGPNAVLA--FKKEGYRWRDFSVRELFSTLRYPGFWRLGL  359 (473)
Q Consensus       287 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~g----~~~iG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (473)
                      +..... ....+....+.......+|++|..++    ++++|++....  .++++.+. ..++                 
T Consensus       233 ~~~~~~~~p~~~~~~~~~~~~~~~~y~~p~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-~~~~-----------------  294 (397)
T 2oln_A          233 QATPVTEAPFWFAFQQPTPQDTNLFYGFGHNPWAPGEFVRCGPDFEVDPLDHPSAATG-VADR-----------------  294 (397)
T ss_dssp             BCSCCSCCCEEEEECCCCSSSCCCEEECCCCSSSSSSEEEEEECCCCSCCSSGGGCCS-SCCH-----------------
T ss_pred             ecCcccCCCEEEEecCCCCcccceEEECCCCCCCCCceEEEEecCCCCCcCCCccccC-CCCH-----------------
Confidence            543110 01000000000000015799998665    79999765311  00110000 0000                 


Q ss_pred             hhhhhchHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEeeCCCCccc-----------cccceeeeecCCccc
Q psy7710         360 KYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLV-----------DDFGVKAIHSPHTGI  428 (473)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d~~p~-----------~g~~~~~g~~~~~gi  428 (473)
                                   ...+.+++.+.++||.+.. .+.+.|+|+|+..+|+|+.|+           .|+|+++|  +| |+
T Consensus       295 -------------~~~~~l~~~~~~~~p~l~~-~~~~~~~g~~~~p~t~D~~p~ig~~~~~~~~~~~l~~a~G--g~-G~  357 (397)
T 2oln_A          295 -------------RQMDRLSGWLRDHLPTVDP-DPVRTSTCLAVLPTDPERQFFLGTARDLMTHGEKLVVYGA--GW-AF  357 (397)
T ss_dssp             -------------HHHHHHHHHHHHHCTTBCS-SCSEEEEEEEEEESSTTCCCEEEESTTTSTTGGGEEEEEE--SS-CG
T ss_pred             -------------HHHHHHHHHHHHhCCCCCC-CceeEEEEEecCCcCCCCCeEeecCCccccCCCCEEEEeC--cc-hh
Confidence                         0134556899999999887 788999999872248999885           36899999  54 78


Q ss_pred             cchHHHHHHHHHHHHhhCCeEec-ccceeecc
Q psy7710         429 VDWGLVTRVMGEEFCELGGEIRL-NQQVESFK  459 (473)
Q Consensus       429 ~~~~~~a~~~g~~~~~~~~~~~~-~~~~~~~~  459 (473)
                      ..++.+|+.++++|.....+.++ .+...||.
T Consensus       358 ~~ap~~g~~la~~i~~~~~~~~~~~f~~~Rf~  389 (397)
T 2oln_A          358 KFVPLFGRICADLAVEDSTAYDISRLAPQSAL  389 (397)
T ss_dssp             GGHHHHHHHHHHHHHHSCCSSCCGGGSCCC--
T ss_pred             hccHHHHHHHHHHHhCCCCCCCccccccChhh
Confidence            77667777777777665444443 36777775

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=100.00  E-value=7.2e-35  Score=305.12  Aligned_cols=347  Identities=13%  Similarity=0.121  Sum_probs=250.7

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHH----HHHhHHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKL----CVEGMNLAYE  131 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~  131 (473)
                      ..+||+|||||++|+++|++|+++  |.+|+|||++..+++++|+.+.|.+++........+ .++    ...+.+.+.+
T Consensus       263 ~~~DVvIIGgGiaGlsaA~~La~~--G~~V~vlEk~~~~g~gaS~~~~G~l~~~~~~~~~~~-~~~~~~~~~~a~~~~~~  339 (689)
T 3pvc_A          263 RCDDIAIIGGGIVSALTALALQRR--GAVVTLYCADAQPAQGASGNRQGALYPLLNGKNDAL-ETFFTSAFTFARRQYDQ  339 (689)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHTT--TCCEEEEESSSSTTCSGGGCSCEEECCCCCSSCSHH-HHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHC--CCcEEEEeCCCccccccccccCCEEecCCCCCChHH-HHHHHHHHHHHHHHHHH
Confidence            458999999999999999999999  999999999877899999999999987654333222 222    2334555555


Q ss_pred             H-HHhcCCCCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCC--cceeeCHHHHHhhcCCcccceeEecCCccceeHHHHH
Q psy7710         132 Y-FDKRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVK--DVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVT  207 (473)
Q Consensus       132 ~-~~~~~~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~--~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  207 (473)
                      + .......+...|.+.+..++ ..+.+..    +...+++  ..++++.+++....|.....++++.+..+.++|..++
T Consensus       340 l~~~~~~~~~~~~g~l~~~~~~~~~~~~~~----~~~~g~~~~~~~~l~~~~~~~~~~l~~~~gg~~~p~~g~v~p~~l~  415 (689)
T 3pvc_A          340 LLEQGIAFDHQWCGVSQLAFDDKSRGKIEK----MLHTQWPVEFAEAMSREQLSELAGLDCAHDGIHYPAGGWLCPSDLT  415 (689)
T ss_dssp             HHHTTCCCCEECCCEEEECCSHHHHHHHHH----HTTSCCCTTTCEEECHHHHHHHHSSCCSSCEEEETTCEEECHHHHH
T ss_pred             hhhhccccccccCceEEeccCHHHHHHHHH----HHhcCCChHHhhccCHHHHHHhcCCCcccceEEecCCeEECHHHHH
Confidence            5 33334456778888887665 4433332    3345652  1348999998888884334788999999999999999


Q ss_pred             HHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCc-EEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeC
Q psy7710         208 RVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGD-HLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLN  286 (473)
Q Consensus       208 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~-~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~  286 (473)
                      ..|.+.+++.|++|+++++|++|..++++|.|++.+|. +++||.||+|+|+|+..+.+.++    .++.|+|||++.++
T Consensus       416 ~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~s~~l~~~~~----lpl~p~rGq~~~~~  491 (689)
T 3pvc_A          416 HALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHRLPEWEQTHH----LPLSAVRGQVSHIP  491 (689)
T ss_dssp             HHHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGGTTCSTTTTT----SCCEEEEEEEEEEE
T ss_pred             HHHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcchhccccccC----CccccccCcEEEEC
Confidence            99999999999999999999999998888999998886 79999999999999987877654    36899999999987


Q ss_pred             cCcccCcccccccCCCCCCCccEEEEecCC--CCeEEECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhh
Q psy7710         287 PAKQHLVRGNIYPVPDPNFPFLGVHFTPRM--DGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRY  364 (473)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (473)
                      ......      ..+.. . ..+.|++|..  +|++++|++.+..    +.+. ..+.+                     
T Consensus       492 ~~~~~~------~l~~v-~-~~~~Yl~P~~~~~g~~~iGat~~~~----~~d~-~~~~~---------------------  537 (689)
T 3pvc_A          492 TTPVLS------QLQQV-L-CYDGYLTPVNPANQHHCIGASYQRG----DIAT-DFRLT---------------------  537 (689)
T ss_dssp             CCTTGG------GCCSE-E-ESSSEECCCBTTTTEEEEECCCEET----BCCC-CCCHH---------------------
T ss_pred             CCCccc------cCCee-E-eCCceEccccCCCCeEEEEEeccCC----CCCC-CCCHH---------------------
Confidence            543210      00000 0 1136999998  7999999986542    1111 11111                     


Q ss_pred             chHHHHhhhcchhHHHHHhhcccCCC-----CCCcccCCCeeceEeeCCCCccc--------------------------
Q psy7710         365 GSKEMIMSWFPSMRVNELKQYIEEIE-----AGDIQRGPSGVRAQALSSSGDLV--------------------------  413 (473)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~P~l~-----~~~i~~~w~G~rp~~~t~d~~p~--------------------------  413 (473)
                      .         .+.+++++.+++|.+.     +.++.+.|+|+||+  |+|+.|+                          
T Consensus       538 ~---------~~~ll~~l~~~~P~l~~~~~~~~~~~~~w~G~R~~--t~D~lPiiG~~p~~~~~~~~y~~l~~~~~~~~~  606 (689)
T 3pvc_A          538 E---------QQENRERLLRCLPQVSWPQQVDVSDNQARCGVRCA--IRDHLPMVGAVPDYAATLAQYQDLSRRIQHGGE  606 (689)
T ss_dssp             H---------HHHHHHHHHHHCTTCSGGGGCCCTTCCEEEEEEEE--CTTSCCEEEEEECHHHHHHHSTTHHHHC-----
T ss_pred             H---------HHHHHHHHHHhCCCccccccccccccceeEEEeee--cCCCCcccCcCCCHHHHHHHHHhhhcccccccc
Confidence            0         2345688999999987     45678999999987  8999985                          


Q ss_pred             ------------cccceeeeecCCccccchHHHHHHHHHHHHhhCCeEe----cccceeecc
Q psy7710         414 ------------DDFGVKAIHSPHTGIVDWGLVTRVMGEEFCELGGEIR----LNQQVESFK  459 (473)
Q Consensus       414 ------------~g~~~~~g~~~~~gi~~~~~~a~~~g~~~~~~~~~~~----~~~~~~~~~  459 (473)
                                  .|+|+++||+++ |+..++.+|..++++|+....+++    ..+...||.
T Consensus       607 ~~~~~~~~~~~~~~l~~a~G~g~~-Gl~~ap~~ae~lA~~i~g~~~p~~~~~l~~~~p~Rf~  667 (689)
T 3pvc_A          607 SEVNDIAVAPVWPELFMVGGLGSR-GLCSAPLVAEILAAQMFGEPLPLDAKTLAALNPNRFW  667 (689)
T ss_dssp             ---CCCCCCCEEEEEEEEECCTTC-HHHHHHHHHHHHHHHHTTCCCSSCHHHHHTTCTTHHH
T ss_pred             ccccccccCCCCCChHHhhccccc-HHHHHHHHHHHHHHHHcCCCCCCCHHHHhhcChhHHH
Confidence                        357899998775 676666666666666653333333    235566665

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=100.00  E-value=2.5e-34  Score=300.89  Aligned_cols=347  Identities=12%  Similarity=0.156  Sum_probs=251.7

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK  135 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (473)
                      ..+||+|||||++|+++|++|+++  |.+|+|||+...+++++|+.+.|.+++........ ..++...+.....++.++
T Consensus       271 ~~~DVvIIGgGiaGlsaA~~La~~--G~~V~vlEk~~~~g~gaS~~~~G~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  347 (676)
T 3ps9_A          271 SKREAAIIGGGIASALLSLALLRR--GWQVTLYCADEAPALGASGNRQGALYPLLSKHDEA-LNRFFSNAFTFARRFYDQ  347 (676)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTT--TCEEEEEESSSSSSCSTTCCSCEEECCCCCSSCHH-HHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCcccccCccCCCceecCcCCCCccH-HHHHHHHHHHHHHHHHHH
Confidence            348999999999999999999999  99999999987889899999999998765433322 234444444555566666


Q ss_pred             cCC--CCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCC--cceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHH
Q psy7710         136 RNI--PYKKCGKLIVALNE-QLEPLHDLYERSIQNNVK--DVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVM  210 (473)
Q Consensus       136 ~~~--~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~--~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l  210 (473)
                      .+.  .+...|.+.+..+. ..+.+..    +...+++  .+++++.+++....+.....++++.+..+.++|..++..|
T Consensus       348 l~~~~~~~~~g~l~~~~~~~~~~~~~~----~~~~g~~~~~~~~l~~~~~~~~~~l~~~~gg~~~p~~g~v~p~~l~~aL  423 (676)
T 3ps9_A          348 LPVKFDHDWCGVTQLGWDEKSQHKIAQ----MLSMDLPAELAVAVEANAVEQITGVATNCSGITYPQGGWLCPAELTRNV  423 (676)
T ss_dssp             CCSCCCEECCCEEEECCSHHHHHHHHH----HHTSCCCTTTCEEECHHHHHHHHSSCCSSCEEEETTCEEECHHHHHHHH
T ss_pred             CCCCcCcCcCCeeeecCCHHHHHHHHH----HHhcCCcHHHhhhCCHHHHHHhhCCCccCCcEEecCCeeeCHHHHHHHH
Confidence            654  34567888777665 4443332    3455652  2348999988888774334788999999999999999999


Q ss_pred             HHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcCcc
Q psy7710         211 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQ  290 (473)
Q Consensus       211 ~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~~~  290 (473)
                      .+.+++.|++|+++++|++|..++++|.|++.+|.+++||.||+|+|.|+..+.+..+    .++.|+|||++.++....
T Consensus       424 ~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~s~~l~~~~~----lpl~p~rGq~~~~~~~~~  499 (676)
T 3ps9_A          424 LELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQISRFSQTST----LPVYSVAGQVSHIPTTPE  499 (676)
T ss_dssp             HHHHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGGGGCSTTTTT----CSCEEEEEEEEEEECCTT
T ss_pred             HHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcchhccccccC----CcceeecCEEEEECCCcc
Confidence            9999999999999999999999888899999887689999999999999987877654    368999999999865432


Q ss_pred             cCcccccccCCCCCCCccEEEEecCC--CCeEEECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhhchHH
Q psy7710         291 HLVRGNIYPVPDPNFPFLGVHFTPRM--DGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKE  368 (473)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~p~~--~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (473)
                      ..      ..+.. . ..+.|++|..  +|++++|++.+..    +.+. +.+.+                     .   
T Consensus       500 ~~------~l~~~-l-~~~~Yl~P~~~~~g~~~iG~t~~~~----~~d~-~~~~~---------------------~---  542 (676)
T 3ps9_A          500 LA------ELKQV-L-CYDGYLTPQNPANQHHCIGASYHRG----SEDT-AYSED---------------------D---  542 (676)
T ss_dssp             GG------GCCSE-E-ESSSEECCCBTTTTEEEEECCCEET----CCCC-CCCHH---------------------H---
T ss_pred             cc------cCCce-e-ECCeeeccccCCCCeEEEeeccCCC----CCCC-CCCHH---------------------H---
Confidence            10      00000 0 1136999987  7999999986542    1111 11111                     0   


Q ss_pred             HHhhhcchhHHHHHhhcccCCC-----CCCcccCCCeeceEeeCCCCcccc-----------------------------
Q psy7710         369 MIMSWFPSMRVNELKQYIEEIE-----AGDIQRGPSGVRAQALSSSGDLVD-----------------------------  414 (473)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~P~l~-----~~~i~~~w~G~rp~~~t~d~~p~~-----------------------------  414 (473)
                            .+.+++++.+++|.+.     +..+.+.|+|+||+  |+|+.|++                             
T Consensus       543 ------~~~~l~~l~~~~P~l~~~~~~d~~~~~~~~G~R~~--t~D~lPiiG~~p~~~~~~~~y~~l~~~~~~~~~~~~~  614 (676)
T 3ps9_A          543 ------QQQNRQRLIDCFPQAQWAKEVDVSDKEARCGVRCA--TRDHLPMVGNVPDYEATLVEYASLAEQKDEAVSAPVF  614 (676)
T ss_dssp             ------HHHHHHHHHHHSTTCHHHHTCCCTTCCEEEEEEEE--CTTCCCEEEEEECHHHHHHHTTTTTSCCTTCCSCCEE
T ss_pred             ------HHHHHHHHHHhCCCccccccCcccccceEEEEeCc--cCCcCCccCcCCChHHHHHHHHhhhccccccccCCCC
Confidence                  2345688999999976     35678999999987  89999862                             


Q ss_pred             -ccceeeeecCCccccchHHHHHHHHHHHHhhCCeEe----cccceeecc
Q psy7710         415 -DFGVKAIHSPHTGIVDWGLVTRVMGEEFCELGGEIR----LNQQVESFK  459 (473)
Q Consensus       415 -g~~~~~g~~~~~gi~~~~~~a~~~g~~~~~~~~~~~----~~~~~~~~~  459 (473)
                       |+|+++||+++ |+..++.+|..++++|+....+++    ..+...||.
T Consensus       615 ~~l~~a~G~g~~-Gl~~Ap~~ae~lA~~i~g~~~pl~~~~l~~~~p~Rf~  663 (676)
T 3ps9_A          615 DDLFMFAALGSR-GLCSAPLCAEILAAQMSDEPIPMDASTLAALNPNRLW  663 (676)
T ss_dssp             EEEEEEECCTTC-HHHHHHHHHHHHHHHHTTCCCSSBHHHHHTTCTTHHH
T ss_pred             CCEeeeeccccc-HHHHHHHHHHHHHHHHcCCCCCCCHHHHhhhChHHhH
Confidence             57899998775 676555666666666543333333    235555654

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=100.00  E-value=1e-33  Score=302.61  Aligned_cols=372  Identities=19%  Similarity=0.242  Sum_probs=264.8

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEeccCcc-cCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKEKEL-GMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYF  133 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~~~~-g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (473)
                      .++||+|||||++|+++|++|+++  |. +|+|||++... .+++|+++.|++...   ........+...+.+.+.++.
T Consensus         3 ~~~dVvIIGgGi~Gls~A~~La~~--G~~~V~vlE~~~~~~~~gss~~~~G~~~~~---~~~~~~~~l~~~s~~~~~~l~   77 (830)
T 1pj5_A            3 STPRIVIIGAGIVGTNLADELVTR--GWNNITVLDQGPLNMPGGSTSHAPGLVFQT---NPSKTMASFAKYTVEKLLSLT   77 (830)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHHT--TCCCEEEECSSCTTCCCSGGGTCCCEECCC---CSCHHHHHHHHHHHHHHHHCE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhC--CCCcEEEEeCCCCCCCcccceeCCceeecC---CCCHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999  87 99999998433 356677777877543   233344566677777777663


Q ss_pred             HhcCCCCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCccc---ceeEecCCccceeHHHHHHH
Q psy7710         134 DKRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG---VKAIHSPNTGIVDWGLVTRV  209 (473)
Q Consensus       134 ~~~~~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~  209 (473)
                      +.....+...|.+.+..++ ..+.+....+.....|+ ..++++.+++...+|.+..   .++++.+.++.++|..++..
T Consensus        78 ~~~~~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~G~-~~~~l~~~e~~~~~p~l~~~~~~gg~~~~~~g~v~p~~l~~~  156 (830)
T 1pj5_A           78 EDGVSCFNQVGGLEVATTETRLADLKRKLGYAAAWGI-EGRLLSPAECQELYPLLDGENILGGLHVPSDGLASAARAVQL  156 (830)
T ss_dssp             ETTEESEECCCEEEEESSHHHHHHHHHHHHHHHHHTC-CCEEECHHHHHHHCTTSCGGGCCEEEEETTCEEECHHHHHHH
T ss_pred             hhCCCCeeecCcEEEEeCHHHHHHHHHHHHHHHHcCC-CeEEECHHHHHHhCccCCccceEEEEEECCCceEcHHHHHHH
Confidence            2222246778888888777 66667777777777888 7899999999999887653   67899999999999999999


Q ss_pred             HHHHHHHcCcEEEeCceEEEEEEcCCeE-EEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcC
Q psy7710         210 MGEEFCELGGEIRLNQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPA  288 (473)
Q Consensus       210 l~~~~~~~Gv~i~~~~~V~~i~~~~~~v-~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~  288 (473)
                      |.+.++++|++|+++++|++|..+++++ .|++.+| +++||.||+|+|.|+..+.+++|++.  ++.|++||++.+.+.
T Consensus       157 L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG~~s~~l~~~~g~~~--pl~p~~g~~~~~~~~  233 (830)
T 1pj5_A          157 LIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGAKIGAMIGMAV--PLLPLAHQYVKTTPV  233 (830)
T ss_dssp             HHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHHHHHHTTTCCC--CCEEEEEEEEEESCC
T ss_pred             HHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCccchHHHHHHhCCCc--cceeceeEEEEEecC
Confidence            9999999999999999999999877765 5888888 89999999999999999999998764  899999999999765


Q ss_pred             cccCcccc---cccCCCCCCCccEEEEecCCCCeEEECCCccccc--cccCcccccchhHHHhhhccCCcchhccchhhh
Q psy7710         289 KQHLVRGN---IYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAF--KKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTR  363 (473)
Q Consensus       289 ~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (473)
                      +.......   ....|....+...+|++|..+ ++++|++.....  ........  .+.+ .+....+..    ...+.
T Consensus       234 ~~~~~~~~~~~~~~~pv~~~~~~~~y~r~~~~-~l~iG~~~~~~~~~~~~~~~~t--~~~~-~~~~~~~~~----~~~~~  305 (830)
T 1pj5_A          234 PAQQGRNDQPNGARLPILRHQDQDLYYREHGD-RYGIGSYAHRPMPVDVDTLGAY--APET-VSEHHMPSR----LDFTL  305 (830)
T ss_dssp             GGGTTTSCTTTCCCSCEEEEGGGTEEEEEETT-EEEEEECCSCCCBCCGGGSCCC--CGGG-CBTTBSTTE----ECCCH
T ss_pred             cccccccccccCCCCCeEEcCCCCEEEEEeCC-eEEEeccCCCCcccCccccccc--cccc-ccccccccc----cCCCH
Confidence            32110000   000010000112479999854 788888642110  00000000  0000 000000000    00000


Q ss_pred             hchHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEeeCCCCccc-------cccceeeeecCCccccchHHHHH
Q psy7710         364 YGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLV-------DDFGVKAIHSPHTGIVDWGLVTR  436 (473)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d~~p~-------~g~~~~~g~~~~~gi~~~~~~a~  436 (473)
                               ...+.+++.+.+++|.|.+.++.+.|+|+||+  |+|+.|+       .|+|+++|+    |+..++.+|.
T Consensus       306 ---------~~~~~l~~~~~~~~P~l~~~~i~~~w~G~r~~--t~D~~PiIG~~p~~~gl~va~G~----G~~~ap~~g~  370 (830)
T 1pj5_A          306 ---------EDFLPAWEATKQLLPALADSEIEDGFNGIFSF--TPDGGPLLGESKELDGFYVAEAV----WVTHSAGVAK  370 (830)
T ss_dssp             ---------HHHHHHHHHHHHHCGGGGGSCEEEEEEEEEEE--CTTSCCEEEECSSSBTEEEEESC----CGGGHHHHHH
T ss_pred             ---------HHHHHHHHHHHHhCccccccCcceEEEeeccc--CCCCCeeeccCCCCCCEEEEECc----hHHhhHHHHH
Confidence                     11345678999999999999999999999987  8999986       478999885    5666777888


Q ss_pred             HHHHHHHhhCCeEec-ccceeecc
Q psy7710         437 VMGEEFCELGGEIRL-NQQVESFK  459 (473)
Q Consensus       437 ~~g~~~~~~~~~~~~-~~~~~~~~  459 (473)
                      .++++|.....++++ +++..||.
T Consensus       371 ~la~li~~~~~~~dl~~~~~~Rf~  394 (830)
T 1pj5_A          371 AMAELLTTGRSETDLGECDITRFE  394 (830)
T ss_dssp             HHHHHHHHSSCSSCCTTTBGGGCC
T ss_pred             HHHHHHhCCCCCccccccChhhhc
Confidence            888888777666664 47888885

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=100.00  E-value=3.4e-32  Score=271.13  Aligned_cols=353  Identities=15%  Similarity=0.100  Sum_probs=231.6

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEeccCcccCcccCCCcceEEeeccCCCchhHH------HHHHHhHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKA------KLCVEGMNL  128 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~------~~~~~~~~~  128 (473)
                      .++||+|||||++|+++|++|+++  |. +|+|||+....++.+++.+.+.+....+.  .....      .+...+.+.
T Consensus         5 ~~~dVvIIGgG~aGlsaA~~La~~--G~~~V~vlE~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~   80 (438)
T 3dje_A            5 KSSSLLIVGAGTWGTSTALHLARR--GYTNVTVLDPYPVPSAISAGNDVNKVISSGQY--SNNKDEIEVNEILAEEAFNG   80 (438)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHT--TCCCEEEEESSCSSCTTCTTCSSCEEECCCCS--CCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHc--CCCcEEEEeCCCCCCCCccCCCCccEEEeccC--CchhhhcchhHHHHHHHHHH
Confidence            568999999999999999999999  89 99999999554444444444433332221  12223      566666666


Q ss_pred             HHHHHHhcCCCCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCC-c-c--cce--eEecCCc-cc
Q psy7710         129 AYEYFDKRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPY-C-K--GVK--AIHSPNT-GI  200 (473)
Q Consensus       129 ~~~~~~~~~~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~-~-~--~~~--~~~~~~~-~~  200 (473)
                      |.++ ......+...|.+.+.... ..+.+......  ..+....++++.+++...+|. + .  ..+  +++.+.. +.
T Consensus        81 ~~~~-~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~--~~g~~~~~~l~~~~~~~~~p~~l~~~~~~g~~g~~~~~~~g~  157 (438)
T 3dje_A           81 WKND-PLFKPYYHDTGLLMSACSQEGLDRLGVRVRP--GEDPNLVELTRPEQFRKLAPEGVLQGDFPGWKGYFARSGAGW  157 (438)
T ss_dssp             HHHC-TTTGGGEECCCEEEEECSHHHHHHHHHHHCG--GGCTTCEEECSHHHHHTTSCTTTSCSCCTTCEEEEESSSCEE
T ss_pred             HhhC-ccccCcEeccceEEEecCcchHHHHHHHHhh--cccCCceecCCHHHHHHhCCcccccCCCCCceEEEeCCCCEE
Confidence            6553 1122346677888877665 44444444433  345522378899999988886 3 1  244  8899999 99


Q ss_pred             eeHHHHHHHHHHHHHHcCcEEEeCc---eEEEEEEcCCeEE-EEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCcee
Q psy7710         201 VDWGLVTRVMGEEFCELGGEIRLNQ---QVESFKENPESVT-ISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIV  276 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~~Gv~i~~~~---~V~~i~~~~~~v~-v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~  276 (473)
                      +++..++..|.+.++++|++|++++   +|++|..+++++. |++.+|.+++||.||+|+|+|+..|++ ++    .++.
T Consensus       158 ~~~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~~l~~-l~----~~~~  232 (438)
T 3dje_A          158 AHARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASAGQFLD-FK----NQLR  232 (438)
T ss_dssp             ECHHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGGGGTSC-CT----TCCE
T ss_pred             ecHHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCChhhhcC-cc----ccee
Confidence            9999999999999999999999999   9999998888887 999998789999999999999987765 32    3577


Q ss_pred             eeeeEEEEeCcCcccCcccccccCCCCCCCccEEEEecCCC-CeEEECCCccccccccCcccccchhHHHhhhccCCcch
Q psy7710         277 PFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMD-GSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFW  355 (473)
Q Consensus       277 p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (473)
                      |.++++..+....... .. ....|.......++|++|..+ +.+++|....      ++......+..  .....+.. 
T Consensus       233 p~~~~~~~~~l~~~~~-~~-~~~~p~~~~~~~~~~~~p~~~~~~l~i~~~~~------g~~~~~~~~~~--~~~~~p~~-  301 (438)
T 3dje_A          233 PTAWTLVHIALKPEER-AL-YKNIPVIFNIERGFFFEPDEERGEIKICDEHP------GYTNMVQSADG--TMMSIPFE-  301 (438)
T ss_dssp             EEEEEEEEEECCGGGH-HH-HTTCCEEEETTTEEECSCCTTTCEEEEEECCS------CEECEEECTTC--CEEECCCC-
T ss_pred             eEEEEEEEEEcChHHh-hh-hcCCCEEEECCCceecCCCCCCCeEEEEeCCC------CccCCccCCCc--ccccCCcc-
Confidence            8766655543322110 00 000110000123788888854 5577752110      00000000000  00000000 


Q ss_pred             hccchhhhhchHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEeeCCCCccc-------cccceeeeecCCccc
Q psy7710         356 RLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLV-------DDFGVKAIHSPHTGI  428 (473)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d~~p~-------~g~~~~~g~~~~~gi  428 (473)
                          ..  ....     ...+.+.+.+.++||.|.+.++.+.|+|+||+  |||+.|+       .|+|+++||++| |+
T Consensus       302 ----~~--~~~~-----~~~~~l~~~~~~~~P~l~~~~~~~~~~g~~~~--t~D~~piig~~p~~~~l~~a~G~~g~-G~  367 (438)
T 3dje_A          302 ----KT--QIPK-----EAETRVRALLKETMPQLADRPFSFARICWCAD--TANREFLIDRHPQYHSLVLGCGASGR-GF  367 (438)
T ss_dssp             ----CS--SCBH-----HHHHHHHHHHHHHCGGGTTCCCSEEEEEEEEE--CTTSCCEEEECSSCTTEEEEECCTTC-CG
T ss_pred             ----cc--cCCH-----HHHHHHHHHHHHhCcccccCCcceeeEEEeCc--CCCCCeEEeecCCCCCEEEEECCCCc-ch
Confidence                00  0000     11345568899999999999999999999987  8999886       589999999876 57


Q ss_pred             cchHHHHHHHHHHHHhh
Q psy7710         429 VDWGLVTRVMGEEFCEL  445 (473)
Q Consensus       429 ~~~~~~a~~~g~~~~~~  445 (473)
                      ..++.+|..++++|+..
T Consensus       368 ~~ap~~g~~la~~i~g~  384 (438)
T 3dje_A          368 KYLPSIGNLIVDAMEGK  384 (438)
T ss_dssp             GGTTTHHHHHHHHHHTC
T ss_pred             hhhHHHHHHHHHHHhCC
Confidence            66667777777776543

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=100.00  E-value=3e-33  Score=270.53  Aligned_cols=314  Identities=15%  Similarity=0.125  Sum_probs=219.2

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcC----CCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHH
Q psy7710          58 YDVVVVGGGIVGVATARELKLNY----PKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYF  133 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~----~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (473)
                      +||+|||||++|+++|++|++++    |+.+|+|||+. .+++++|..++|++.+............+...+.+.+.++.
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~-~~~~~aS~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADR-FTPLTTTDVAAGLWQPYLSDPNNPQEADWSQQTFDYLLSHV   79 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESS-CGGGSGGGTCCCBCCCCSSCCSCTHHHHHHHHHHHHHHTTT
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECC-CCCCCccccCcceeecccCCCchHHHHHHHHHHHHHHHHHh
Confidence            48999999999999999999993    23999999998 57888999999998874332334445566666767666655


Q ss_pred             HhcC---CCC-cccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHH
Q psy7710         134 DKRN---IPY-KKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRV  209 (473)
Q Consensus       134 ~~~~---~~~-~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  209 (473)
                      .+..   ..+ ...|.+......+.+       .+.+.+. .+++++.+++. .+|..  .++++.+ ++.++|..++..
T Consensus        80 ~~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~-~~~~l~~~e~~-~~p~~--~~~~~~~-~~~v~p~~~~~~  147 (351)
T 3g3e_A           80 HSPNAENLGLFLISGYNLFHEAIPDP-------SWKDTVL-GFRKLTPRELD-MFPDY--GYGWFHT-SLILEGKNYLQW  147 (351)
T ss_dssp             TSTTHHHHTEEEEEEEEEESSCCCCC-------GGGGTSE-EEEECCHHHHT-TCTTC--CEEEEEE-EEEECHHHHHHH
T ss_pred             hccCCCCccEEEEEEEEEecCCcccc-------CHHHhCC-CceECCHHHhc-cCCCC--ceEEEec-ceEEcHHHHHHH
Confidence            4431   223 334444433222322       1223455 67889998883 45542  4567776 689999999999


Q ss_pred             HHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcCc
Q psy7710         210 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAK  289 (473)
Q Consensus       210 l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~~  289 (473)
                      |.+.++++|++|++ ++|+++...+           .++||.||+|+|.|+..+++      +.++.|.|||++.++++.
T Consensus       148 l~~~~~~~Gv~i~~-~~V~~i~~~~-----------~~~a~~VV~A~G~~s~~l~~------~~~l~p~rg~~~~~~~~~  209 (351)
T 3g3e_A          148 LTERLTERGVKFFQ-RKVESFEEVA-----------REGADVIVNCTGVWAGALQR------DPLLQPGRGQIMKVDAPW  209 (351)
T ss_dssp             HHHHHHHTTCEEEE-CCCCCHHHHH-----------HTTCSEEEECCGGGGGGTSC------CTTCEEEEEEEEEEECTT
T ss_pred             HHHHHHHCCCEEEE-EEeCCHHHhh-----------cCCCCEEEECCCcChHhhcC------CCceeecCCcEEEEeCCC
Confidence            99999999999988 8888775321           36799999999999977653      257999999999997642


Q ss_pred             ccCcccccccCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhhchHHH
Q psy7710         290 QHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEM  369 (473)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (473)
                         ....++...........+|++|+.+ ++++|++.+..    +++. ..+.+                          
T Consensus       210 ---~~~~~~~~~~~~~~~~~~y~~p~~~-~~~iGg~~~~~----~~~~-~~~~~--------------------------  254 (351)
T 3g3e_A          210 ---MKHFILTHDPERGIYNSPYIIPGTQ-TVTLGGIFQLG----NWSE-LNNIQ--------------------------  254 (351)
T ss_dssp             ---CCSEEEECCTTTCTTCSCEEEECSS-CEEEECCCEET----CCCC-SCCHH--------------------------
T ss_pred             ---cceEEEeccccCCCCceeEEEeCCC-cEEEeeeeecC----CCCC-CCCHH--------------------------
Confidence               2222221110001122579999977 89999986542    1111 00110                          


Q ss_pred             HhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEeeCCCCccc-----------cccceeeeecCCccccchHHHHHHH
Q psy7710         370 IMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQALSSSGDLV-----------DDFGVKAIHSPHTGIVDWGLVTRVM  438 (473)
Q Consensus       370 ~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~~t~d~~p~-----------~g~~~~~g~~~~~gi~~~~~~a~~~  438 (473)
                          ..+.+++.+.+++|.+.+.++.+.|+|+||+  |+| .|+           .|+|+++||+++ |+..++.+|..+
T Consensus       255 ----~~~~l~~~~~~~~P~l~~~~i~~~w~G~r~~--t~D-~p~~~~~ig~~~~~~~~~~~~G~~g~-G~~~ap~~g~~l  326 (351)
T 3g3e_A          255 ----DHNTIWEGCCRLEPTLKNARIIGERTGFRPV--RPQ-IRLEREQLRTGPSNTEVIHNYGHGGY-GLTIHWGCALEA  326 (351)
T ss_dssp             ----HHHHHHHHHHHHCGGGGGCEEEEEEEEEEEE--CSS-CEEEEEEECCSSSCEEEEEEECCTTC-HHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHhCCCccCCcEeeeeEeeCCC--CCC-ccceeeeccCCCCCCeEEEEeCCCcc-hHhhhHHHHHHH
Confidence                1345568999999999999999999999988  788 763           578999998875 676666667777


Q ss_pred             HHHHHhh
Q psy7710         439 GEEFCEL  445 (473)
Q Consensus       439 g~~~~~~  445 (473)
                      ++++.+.
T Consensus       327 a~li~~~  333 (351)
T 3g3e_A          327 AKLFGRI  333 (351)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7666553

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.98  E-value=2.2e-30  Score=261.59  Aligned_cols=310  Identities=14%  Similarity=0.095  Sum_probs=211.5

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHhc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKR  136 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (473)
                      ++||+|||||++|+++|++|+++  |.+|+|+|++ .+++++|+++.++++.+..+... ....+...+...+..+.+..
T Consensus         3 ~~DVvIIGgGi~G~~~A~~La~~--G~~V~llE~~-~~~~gtS~~s~gli~~g~~~~~~-~~~~l~~~~~~~~~~l~~~~   78 (501)
T 2qcu_A            3 TKDLIVIGGGINGAGIAADAAGR--GLSVLMLEAQ-DLACATSSASSKLIHGGLRYLEH-YEFRLVSEALAEREVLLKMA   78 (501)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT--TCCEEEECSS-STTCSGGGSSCCEECCCGGGGGG-TCHHHHHHHHHHHHHHHHHC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhC--CCCEEEEECC-CCCCCccccccccccccchhhhh-chHHHHHHHHHHHHHHHHhC
Confidence            58999999999999999999999  9999999998 68899999999999988765432 12345555555555554433


Q ss_pred             CCCCcccCeEEEEeCc--ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhc--CCccc--ceeEecCCccceeHHHHHHHH
Q psy7710         137 NIPYKKCGKLIVALNE--QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIE--PYCKG--VKAIHSPNTGIVDWGLVTRVM  210 (473)
Q Consensus       137 ~~~~~~~g~l~~~~~~--~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~--p~~~~--~~~~~~~~~~~~~~~~~~~~l  210 (473)
                      ..-....+.+......  ...............+  ..++++.+++...+  |.+..  .++++. .+++++|..++..|
T Consensus        79 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~P~l~~~~~~~~~~-~~g~v~~~~l~~~l  155 (501)
T 2qcu_A           79 PHIAFPMRFRLPHRPHLRPAWMIRIGLFMYDHLG--KRTSLPGSTGLRFGANSVLKPEIKRGFEY-SDCWVDDARLVLAN  155 (501)
T ss_dssp             TTTEEEEEEEEECCTTTSCHHHHHHHHHHHHSSS--CCSSSCCCEEEECCTTSSBCTTCCEEEEE-EEEEECHHHHHHHH
T ss_pred             CccccccCeEeccCcccchHHHHHHHHHHHHhcC--CcEEECHHHHHHhhcCCCcchhceEEEEe-eCCEEcHHHHHHHH
Confidence            3112222222222111  1111112222222222  45677777666666  76543  344444 57889999999999


Q ss_pred             HHHHHHcCcEEEeCceEEEEEEcCCeEEEEc---CCCc--EEEcCEEEEcCCcChHHHHHh-cCCCCCCceeeeeeEEEE
Q psy7710         211 GEEFCELGGEIRLNQQVESFKENPESVTIST---KQGD--HLESSYALVCAGLQADEMALK-SGCSLEPAIVPFRGEYLL  284 (473)
Q Consensus       211 ~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~---~~g~--~i~ad~VV~aaG~~s~~l~~~-~g~~~~~~~~p~~g~~~~  284 (473)
                      .+.+++.|++++++++|+++..+++.+.|++   .+|.  +++||.||+|+|.|+..+.+. ++.....++.|.||+++.
T Consensus       156 ~~~a~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~~l~~~~l~~~~~~~i~p~rG~~~~  235 (501)
T 2qcu_A          156 AQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDDGMHLPSPYGIRLIKGSHIV  235 (501)
T ss_dssp             HHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGGHHHHHHHHTCCCCSSCBCCEEEEEEE
T ss_pred             HHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChhHHHHHHHhccCCcccccccceeEEEE
Confidence            9999999999999999999998877677766   3564  789999999999999998885 554323479999999998


Q ss_pred             eCcCcccCcccccccCCCCCCCccEEEEecCCCCeEEECCCccccc-cccCcccccchhHHHhhhccCCcchhccchhhh
Q psy7710         285 LNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAF-KKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTR  363 (473)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (473)
                      ++..... ....+++.++    ...+|+.|..+|.+++|+|..... +++     +..+                   +.
T Consensus       236 ~~~~~~~-~~~~~~~~~d----g~~~~~~P~~~g~~~iG~t~~~~~~~~~-----~~~~-------------------~~  286 (501)
T 2qcu_A          236 VPRVHTQ-KQAYILQNED----KRIVFVIPWMDEFSIIGTTDVEYKGDPK-----AVKI-------------------EE  286 (501)
T ss_dssp             EECSSSC-SCEEEEECTT----SCEEEEEEETTTEEEEECCCEECCSCGG-----GCCC-------------------CH
T ss_pred             ECCCCCC-ceEEEeecCC----CCEEEEEEcCCCcEEEcCCCCCCCCCcC-----CCCC-------------------CH
Confidence            8643211 1112222111    236899999889999999854210 000     0000                   00


Q ss_pred             hchHHHHhhhcchhHHHHHhhccc-CCCCCCcccCCCeeceEeeCCCCccc
Q psy7710         364 YGSKEMIMSWFPSMRVNELKQYIE-EIEAGDIQRGPSGVRAQALSSSGDLV  413 (473)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~P-~l~~~~i~~~w~G~rp~~~t~d~~p~  413 (473)
                      +.         .+.+++.+.++|| .+...+|++.|+|+||.  ++|+.|.
T Consensus       287 ~~---------~~~l~~~~~~~~p~~l~~~~v~~~~aG~Rp~--~~d~~p~  326 (501)
T 2qcu_A          287 SE---------INYLLNVYNTHFKKQLSRDDIVWTYSGVRPL--CDDESDS  326 (501)
T ss_dssp             HH---------HHHHHHHHHHHBSSCCCGGGCCEEEEEEECC--BCCCCSS
T ss_pred             HH---------HHHHHHHHHHhcCCCCCcccEEEEEEEEeee--cCCCCCc
Confidence            11         3456799999999 89989999999999998  6888774

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.97  E-value=1e-29  Score=259.71  Aligned_cols=343  Identities=15%  Similarity=0.132  Sum_probs=225.1

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK  135 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (473)
                      .++||+|||||++|+++|++|+++  |.+|+|||++ .+++++|++|.++++.+..|.... ...+...+...+..+...
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~r--G~~V~LlE~~-~~~~GtS~~s~gli~~g~ryl~~~-~~~l~~~~~~e~~~l~~~  106 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAAS--GIKTGLIEMQ-DFAEGTSSRSTKLVHGGIRYLKTF-DVEVVADTVGERAVVQGI  106 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHT--TCCEEEECSS-STTCSGGGSSCSEECCCGGGGGGT-CHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCC-CCCCCcccccccccccccchhhcc-ChHHHHHHHHHHHHHHHh
Confidence            368999999999999999999999  9999999998 688999999999999887654321 122333333222222221


Q ss_pred             cCCCCcccCeEEEEeCc-C---hh-----hHHHHHHHHH---hCCCCcceeeCHHHHHhhcCCccc---ceeEecCCccc
Q psy7710         136 RNIPYKKCGKLIVALNE-Q---LE-----PLHDLYERSI---QNNVKDVRLVSAEEIKTIEPYCKG---VKAIHSPNTGI  200 (473)
Q Consensus       136 ~~~~~~~~g~l~~~~~~-~---~~-----~~~~~~~~~~---~~g~~~~~~l~~~~~~~~~p~~~~---~~~~~~~~~~~  200 (473)
                      ...-....+.+...... .   ..     .....++.+.   ..+. ..++++++++...+|.+..   .++++.+. +.
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~l~~~e~~~~~P~l~~~~~~gg~~~~d-g~  184 (571)
T 2rgh_A          107 APHIPKPDPMLLPIYEDEGATTFNMFSVKVAMDLYDKLANVTGTKY-ENYTLTPEEVLEREPFLKKEGLKGAGVYLD-FR  184 (571)
T ss_dssp             CTTSSEECCEEEEEESSSSSCSCCHHHHHHHHHHHHHHHTCSSSTT-CCEEECHHHHHHHCTTSCCTTEEEEEEECC-EE
T ss_pred             CcccccccCceEEeecccccccccHHHHHHHHHHHHHHhhhhccCC-CcEEECHHHHHHhCcCCchhhceEEEEecC-Ce
Confidence            11112344555443332 1   11     1122333333   2344 6789999999999998753   45666664 78


Q ss_pred             eeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeE-EEE-----cCCCcEEEcCEEEEcCCcChHHHHHhcCCCCC-C
Q psy7710         201 VDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESV-TIS-----TKQGDHLESSYALVCAGLQADEMALKSGCSLE-P  273 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v-~v~-----~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~-~  273 (473)
                      ++|..++..+.+.+++.|++|+++++|+++..+++.+ .|+     +.++.+++||.||+|+|+|+..+.++.|.... .
T Consensus       185 v~~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws~~l~~~~g~~~~~~  264 (571)
T 2rgh_A          185 NNDARLVIDNIKKAAEDGAYLVSKMKAVGFLYEGDQIVGVKARDLLTDEVIEIKAKLVINTSGPWVDKVRNLNFTRPVSP  264 (571)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTCCEEEEEBSCEEECCGGGHHHHHTTCCSSCCCC
T ss_pred             EchHHHHHHHHHHHHHcCCeEEeccEEEEEEEeCCEEEEEEEEEcCCCCEEEEEcCEEEECCChhHHHHHHhhccCccCc
Confidence            9999999999999999999999999999999877653 354     23323799999999999999999988886533 4


Q ss_pred             ceeeeeeEEEEeCcCcccCcccccccCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCc
Q psy7710         274 AIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPG  353 (473)
Q Consensus       274 ~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (473)
                      ++.|.||+++.++..........+++.+.  .+...+|++|. ++.+++|+|.+... .+..+. ..+.           
T Consensus       265 ~i~p~rG~~l~~~~~~~~~~~~~~~~~~~--~dgr~~~~~P~-~~~~~iG~t~~~~~-~~~~~~-~~~~-----------  328 (571)
T 2rgh_A          265 KMRPTKGIHLVVDAKKLPVPQPTYFDTGK--QDGRMVFAIPR-ENKTYFGTTDTDYQ-GDFTDP-KVTQ-----------  328 (571)
T ss_dssp             CBCCEEEEEEEEEGGGSCCSSCEEEECSS--SSSCEEEEEEE-TTEEEECCCCEECC-SCSSSC-CCCH-----------
T ss_pred             eeeccceEEEEeccccCCCCcEEEEeccC--CCCcEEEEEEc-CCeEEEcCCCcCCC-CCcCCC-CCCH-----------
Confidence            69999999999975321111111222110  11235799998 57899999865210 000000 0000           


Q ss_pred             chhccchhhhhchHHHHhhhcchhHHHHHhhcccC--CCCCCcccCCCeeceEeeCCCCc---------cc-----cccc
Q psy7710         354 FWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEE--IEAGDIQRGPSGVRAQALSSSGD---------LV-----DDFG  417 (473)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~--l~~~~i~~~w~G~rp~~~t~d~~---------p~-----~g~~  417 (473)
                                +.         ++.+++.+.++||.  +...+|++.|+|+||+  ++|+.         |+     .|++
T Consensus       329 ----------~~---------~~~ll~~~~~~~P~~~l~~~~v~~~waG~Rp~--~~d~~~~~~~~~r~~~i~~~~~gl~  387 (571)
T 2rgh_A          329 ----------ED---------VDYLLDVINHRYPEANITLADIEASWAGLRPL--LIGNSGSPSTISRGSSLEREPDGLL  387 (571)
T ss_dssp             ----------HH---------HHHHHHHHHHHSTTTCCCGGGCCEEEEEEECC--BCC-----------EEEEECTTSCE
T ss_pred             ----------HH---------HHHHHHHHHHhcCccCCchhceeEEeEEeeec--cCCCCCCcccCCCCcEEecCCCCeE
Confidence                      01         34567999999997  4778999999999998  45542         21     3444


Q ss_pred             eeeeecCCccccchHHHHHHHHHHHHhh
Q psy7710         418 VKAIHSPHTGIVDWGLVTRVMGEEFCEL  445 (473)
Q Consensus       418 ~~~g~~~~~gi~~~~~~a~~~g~~~~~~  445 (473)
                      ..+|.    .+..++.+|+.+++++++.
T Consensus       388 ~v~GG----k~Tt~r~~Ae~~~~~i~~~  411 (571)
T 2rgh_A          388 TLSGG----KITDYRKMAEGALRLIRQL  411 (571)
T ss_dssp             EEEEC----CGGGHHHHHHHHHHHHHHH
T ss_pred             EEeCc----chhhHHHHHHHHHHHHHHH
Confidence            33331    1445567777777777664

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=99.97  E-value=2.3e-31  Score=261.96  Aligned_cols=322  Identities=13%  Similarity=0.059  Sum_probs=211.9

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcc-eE-EeeccCCCchhHHHHHHHhHHHHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSG-VV-HAGIYYKPGTLKAKLCVEGMNLAYEYF  133 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (473)
                      .++||+|||||++|+++|++|+++.||.+|+|||+. .++.++|+.+.| .+ .+.. +...  ...+...+.+.|.+  
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~-~~~~~~s~~~~g~~i~~~~~-~~~~--~~~l~~~~~~~~~~--  108 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEG-GLPNEEGATILAPGVWTAQD-IPAG--QEAQAEWTREQLLG--  108 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSS-CSSCTTSHHHHCCCEECGGG-CCTT--CHHHHHHHHHHHHT--
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC-CCCCcchhccCCcceeeccc-CCch--HHHHHHHHHHHHHH--
Confidence            458999999999999999999998667999999998 677778777777 45 2221 1121  34455666665554  


Q ss_pred             HhcC----CCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCc-------ccceeEecCCcccee
Q psy7710         134 DKRN----IPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYC-------KGVKAIHSPNTGIVD  202 (473)
Q Consensus       134 ~~~~----~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~-------~~~~~~~~~~~~~~~  202 (473)
                       ..+    ..+...|.+.......            ..+     +++..++...+|.+       ...++++.+..+.++
T Consensus       109 -~~~~~~~~~~~~~g~l~~~~~~~------------~~g-----~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~v~  170 (405)
T 3c4n_A          109 -ALGSGKTLEVEDRPLLHLLPAGE------------GSG-----LTPTLDALADFPEALALLDPARLPVARVDPRALTYR  170 (405)
T ss_dssp             -GGGSSCCCCEEECCEEEEESSCC------------SSS-----CEEHHHHTTTCHHHHTTSCTTTSCEEEEETTCEEEC
T ss_pred             -HhCCCCCCcEEeeCeEEehhhHh------------HCC-----CCCHHHHHHhCCCccccccCCcceEEEEcCCCEEEc
Confidence             233    3456666665432210            011     44555554444432       236788999999999


Q ss_pred             HHHHHHHHHHHHHHcCcEEEeCceEE---------EEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHH-hcCCCCC
Q psy7710         203 WGLVTRVMGEEFCELGGEIRLNQQVE---------SFKENPESVTISTKQGDHLESSYALVCAGLQADEMAL-KSGCSLE  272 (473)
Q Consensus       203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~---------~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~-~~g~~~~  272 (473)
                      +..++..|.+.+++.|++++++++|+         +|..+++.+.|++.+| +++||.||+|+|.|+..|++ .+|+.. 
T Consensus       171 ~~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~~~g-~i~a~~VV~A~G~~s~~l~~~~~g~~~-  248 (405)
T 3c4n_A          171 PGSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETR-QIRAGVIIVAAGAAGPALVEQGLGLHT-  248 (405)
T ss_dssp             HHHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC-------CBCCE-EEEEEEEEECCGGGHHHHHHHHHCCCC-
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeCCeEEEEECCc-EEECCEEEECCCccHHHHHHHhcCCCC-
Confidence            99999999999999999999999999         8877767777888887 89999999999999988988 888764 


Q ss_pred             CceeeeeeEEEEeCcCcccCcccccccCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCC
Q psy7710         273 PAIVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYP  352 (473)
Q Consensus       273 ~~~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (473)
                       ++.|.+||++.+..+.. .....++        ..++|++|+.+|.+++|++....  ..+++....++.    ..+..
T Consensus       249 -~~~~~~g~~~~~~~~~~-~~~~~~~--------~~~~y~~p~~~g~~~~G~t~~~~--~~~~~~~~~~~~----~~~~~  312 (405)
T 3c4n_A          249 -RHGRAYRQFPRLDLLSG-AQTPVLR--------ASGLTLRPQNGGYTLVPAIHHRD--PHGYHPAGGSLT----GVPTG  312 (405)
T ss_dssp             -CCEEEEEECCEECSCCC-TTCCEEE--------ETTEEEEEETTEEEEECCCCSCB--CSSCCCCCCCBT----TBCCS
T ss_pred             -CcccceeEEEEECCCCc-cCCCeEE--------CCcEEEEEcCCCeEEEecccccc--ccCcCccccccc----ccccC
Confidence             68999999988865321 1111111        12579999988889999874211  011110000000    00000


Q ss_pred             cchhccchhhhhchHHHHhhhcchhHHHHHhhcccCCCCCC---------cccCCCeeceEeeCCCCccc-----cccce
Q psy7710         353 GFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGD---------IQRGPSGVRAQALSSSGDLV-----DDFGV  418 (473)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~---------i~~~w~G~rp~~~t~d~~p~-----~g~~~  418 (473)
                                  ...+.     .+.+.+. .++||.+.+.+         +.+.|+|+||+  |+|+.|+     .|+|+
T Consensus       313 ------------~~~~~-----~~~l~~~-~~~~P~l~~~~~~~~r~~~~i~~~w~G~r~~--t~D~~P~ig~~~~gl~~  372 (405)
T 3c4n_A          313 ------------LRREL-----LEDLVGL-MDAVPALAGEGLELGRSSADVPGAWLALPGG--RPDAPPQAEELAPGLHL  372 (405)
T ss_dssp             ------------SCHHH-----HHHHHHH-TTTCGGGGSSCBCCCSSGGGSCEEEEEEGGG--CTTCCCEEEEEETTEEE
T ss_pred             ------------CCHHH-----HHHHHHH-HHhCCCccccCccccccccceeeEEEeecCc--CCCCCCEecccCCCeEE
Confidence                        01111     2233333 48999988765         88999999998  7999997     37899


Q ss_pred             eeeecCCccccchHHHHHHHHHHHHhh
Q psy7710         419 KAIHSPHTGIVDWGLVTRVMGEEFCEL  445 (473)
Q Consensus       419 ~~g~~~~~gi~~~~~~a~~~g~~~~~~  445 (473)
                      ++||+++  +    .++|.+|+.++++
T Consensus       373 a~G~~g~--~----~~ap~~a~~la~~  393 (405)
T 3c4n_A          373 LLGGPLA--D----TLGLAAAHELAQR  393 (405)
T ss_dssp             EECCTTH--H----HHHHHHHHHHHHH
T ss_pred             EEccCcH--H----HHHHHHHHHHHHH
Confidence            9998653  2    3455555555443

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=99.97  E-value=9e-32  Score=261.34  Aligned_cols=309  Identities=17%  Similarity=0.122  Sum_probs=208.6

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCccc-----CCCcceEEeeccCCCchhHHHHHHHhHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQT-----GHNSGVVHAGIYYKPGTLKAKLCVEGMNLAY  130 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s-----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (473)
                      .++||+|||||++|+++|++|+++  |.+|+|||+. .++.++|     ..+.+.+.+............+...+.+.+.
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~~--G~~V~vle~~-~~~~g~s~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILARK--GYSVHILARD-LPEDVSSQTFASPWAGANWTPFMTLTDGPRQAKWEESTFKKWV   81 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESS-CTTCTTCTTSSGGGCCCBCCCCSCTTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC--CCEEEEEecc-CCCCcCCcCcccCcccccccCcccCCCchHHHHHHHHHHHHHH
Confidence            568999999999999999999999  9999999998 5766533     3344444332211123445567777777777


Q ss_pred             HHHHh-cCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHH
Q psy7710         131 EYFDK-RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRV  209 (473)
Q Consensus       131 ~~~~~-~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  209 (473)
                      ++..+ .++  ...+.+.+...+.. .   ..+.+.+.+. .+++++.+++    |  ....+++. .++.++|..++..
T Consensus        82 ~~~~~~~g~--~~~~~~~~~~~~~~-~---~~~~~~~~g~-~~~~l~~~~~----p--~~~~g~~~-~~~~v~p~~~~~~  147 (363)
T 1c0p_A           82 ELVPTGHAM--WLKGTRRFAQNEDG-L---LGHWYKDITP-NYRPLPSSEC----P--PGAIGVTY-DTLSVHAPKYCQY  147 (363)
T ss_dssp             HHTTTTSSE--EEEEEEEEESSGGG-G---GGGTTTTTST-TCEECCGGGS----S--TTCEEEEE-EEEECCHHHHHHH
T ss_pred             HhCcccCCe--EEECCEEEEecCcc-c---hhHHHHHhCC-CcEECCHHHC----C--CceEEEEE-ecceecHHHHHHH
Confidence            77544 333  23334444432211 1   1122234455 5677777654    3  12245555 7788999999999


Q ss_pred             HHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCcCc
Q psy7710         210 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAK  289 (473)
Q Consensus       210 l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~~~  289 (473)
                      |.+.++++|++|+. ++|++|..+      .     + +||.||+|+|.|+..++..    .+.++.|+|||++.++++.
T Consensus       148 l~~~~~~~G~~i~~-~~v~~l~~~------~-----~-~a~~VV~A~G~~s~~l~~~----~~~~~~p~rg~~~~~~~~~  210 (363)
T 1c0p_A          148 LARELQKLGATFER-RTVTSLEQA------F-----D-GADLVVNATGLGAKSIAGI----DDQAAEPIRGQTVLVKSPC  210 (363)
T ss_dssp             HHHHHHHTTCEEEE-CCCSBGGGT------C-----S-SCSEEEECCGGGGGTSBTT----CCTTEEEEEEEEEEEECCC
T ss_pred             HHHHHHHCCCEEEE-EEcccHhhc------C-----c-CCCEEEECCCcchhhccCc----ccCCccccCCeEEEEeCCc
Confidence            99999999999998 999887543      1     2 7899999999999876643    2458999999999987654


Q ss_pred             ccCcccccccCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcchhccchhhhhchHHH
Q psy7710         290 QHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFWRLGLKYTRYGSKEM  369 (473)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (473)
                      .  ...  ++...  . ..+.|++|+.+|++++|++.+..    +++. ..+.+                          
T Consensus       211 ~--~~~--~~~~~--~-~~~~y~~p~~~g~~~iG~t~~~~----~~~~-~~~~~--------------------------  252 (363)
T 1c0p_A          211 K--RCT--MDSSD--P-ASPAYIIPRPGGEVICGGTYGVG----DWDL-SVNPE--------------------------  252 (363)
T ss_dssp             C--CCE--EECSC--T-TCCEEEEEETTTEEEEECCCEET----CCCC-SCCHH--------------------------
T ss_pred             c--cce--Eeecc--C-CCcEEEEEcCCCEEEEEeeeccC----CCCC-CCCHH--------------------------
Confidence            1  111  11111  1 12489999989999999986532    1111 00110                          


Q ss_pred             HhhhcchhHHHHHhhcccCC------CCCCcccCCCeeceEeeCCCCccc------------------------------
Q psy7710         370 IMSWFPSMRVNELKQYIEEI------EAGDIQRGPSGVRAQALSSSGDLV------------------------------  413 (473)
Q Consensus       370 ~~~~~~~~~~~~~~~~~P~l------~~~~i~~~w~G~rp~~~t~d~~p~------------------------------  413 (473)
                          ..+.+++.+.+++|.+      .+.++++.|+|+||+  |+|+.|+                              
T Consensus       253 ----~~~~l~~~~~~~~P~l~~~~~~~~~~i~~~w~G~rp~--t~d~~piig~~~~~~~~~~~~~~d~~~~~g~~p~~~~  326 (363)
T 1c0p_A          253 ----TVQRILKHCLRLDPTISSDGTIEGIEVLRHNVGLRPA--RRGGPRVEAERIVLPLDRTKSPLSLGRGSARAAKEKE  326 (363)
T ss_dssp             ----HHHHHHHHHHHHCGGGSSSSSGGGCEEEEEEEEEEEE--ETTSCEEEEEEEEESCCTTTCTTCSSCTTCCCSCCEE
T ss_pred             ----HHHHHHHHHHHhCccccCCcccccceEeeceEEECCC--CCCCceeEEEecccccccccCcccccccccccccccc
Confidence                1345669999999998      557899999999998  7899886                              


Q ss_pred             cccceeeeecCCccccchHHHHHHHHHHHH
Q psy7710         414 DDFGVKAIHSPHTGIVDWGLVTRVMGEEFC  443 (473)
Q Consensus       414 ~g~~~~~g~~~~~gi~~~~~~a~~~g~~~~  443 (473)
                      .|+|+++||++| |+..++.+|..+++++.
T Consensus       327 ~~~~~a~G~~g~-G~~~a~~~g~~~a~li~  355 (363)
T 1c0p_A          327 VTLVHAYGFSSA-GYQQSWGAAEDVAQLVD  355 (363)
T ss_dssp             EEEEEEECCTTC-HHHHHHHHHHHHHHHHH
T ss_pred             ceEEEecCCCCc-chheeccHHHHHHHHHH
Confidence            357889998876 57555556666665554

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.97  E-value=2.5e-29  Score=256.25  Aligned_cols=309  Identities=16%  Similarity=0.178  Sum_probs=197.4

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK  135 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (473)
                      .++||+|||||++|+++|+.|+++  |++|+|+|++ .+++++|+++.++++.+..|... ....+..........+.+.
T Consensus        17 ~~~DVvVIGgGi~Gl~~A~~La~~--G~~V~LlEk~-d~~~GtS~~ss~lihgG~ryl~~-~~~~l~~e~~~e~~~l~~~   92 (561)
T 3da1_A           17 KQLDLLVIGGGITGAGIALDAQVR--GIQTGLVEMN-DFASGTSSRSTKLVHGGLRYLKQ-FEIKLVAEVGKERAIVYEN   92 (561)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHTT--TCCEEEEESS-STTCSGGGSSCCEECC----------------CHHHHHHHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC--CCcEEEEECC-CCCCCcccCCcCccccchHHHHh-cCHHHHHHHHHHHHHHHHh
Confidence            469999999999999999999999  9999999999 78999999999999988765332 1112222222222222222


Q ss_pred             cCCCCcccCeEEEEeCc-Chh-----hHHHHHHHHHh-CCCCcceeeCHHHHHhhcCCccc---ceeEecCCccceeHHH
Q psy7710         136 RNIPYKKCGKLIVALNE-QLE-----PLHDLYERSIQ-NNVKDVRLVSAEEIKTIEPYCKG---VKAIHSPNTGIVDWGL  205 (473)
Q Consensus       136 ~~~~~~~~g~l~~~~~~-~~~-----~~~~~~~~~~~-~g~~~~~~l~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~  205 (473)
                      ...-......+...... ...     .....+..+.. ......++++..++...+|.+..   .++++.+ ++.+++..
T Consensus        93 ap~l~~~~~~~~p~~~~~~~~~~~~~~g~~~~d~l~~~~~~~~~~~l~~~~~~~~~P~l~~~~~~gg~~~~-dg~vd~~~  171 (561)
T 3da1_A           93 APHVTTPEWMLLPIFKDGTFGKFSTSLGLKVYDYLADVRKDERRYMLNEKQTLEKEPLLRKENLKGGGIYV-EYRTDDAR  171 (561)
T ss_dssp             CTTTCEEEEEEEEECC---------------------------CEEECHHHHHHHCTTSCCTTCCEEEEEE-EEECCHHH
T ss_pred             CchhccccceeEeecCCccHHHHHHHhHHHHHHHhhcccCCCCcEEECHHHHHHhCccCChhhceeEEEec-CceEcHHH
Confidence            21101111111111110 000     00011111110 11225678999999999997753   3455555 56899999


Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeE-EEEcCC---C--cEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeee
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESV-TISTKQ---G--DHLESSYALVCAGLQADEMALKSGCSLEPAIVPFR  279 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v-~v~~~~---g--~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~  279 (473)
                      ++..|.+.+++.|++|+++++|++|..+++++ .|++.+   |  .+++||.||+|+|.|+..+.+++|+....++.|.|
T Consensus       172 l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s~~l~~~~g~~~~~~v~p~k  251 (561)
T 3da1_A          172 LTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVDTLREKDRSKHGKYLKLSK  251 (561)
T ss_dssp             HHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGHHHHHHTTTCCCSSEEEEEE
T ss_pred             HHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcchHHHHHhcCCCCCceEEecc
Confidence            99999999999999999999999999887764 355432   3  47899999999999999999999886556899999


Q ss_pred             eEEEEeCcCcccCcccccccC-CCCCCCccEEEEecCCCCeEEECCCcccc-ccccCcccccchhHHHhhhccCCcchhc
Q psy7710         280 GEYLLLNPAKQHLVRGNIYPV-PDPNFPFLGVHFTPRMDGSVWLGPNAVLA-FKKEGYRWRDFSVRELFSTLRYPGFWRL  357 (473)
Q Consensus       280 g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~g~~~iG~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (473)
                      |+++.++..........+++. ++    ...+|+.|. +|.+++|+|.+.. .+..+..   .+                
T Consensus       252 G~~lvl~~~~~~~~~~~~~~~~~d----gr~v~~iP~-~g~~~iGtT~~~~~~~~~~~~---~t----------------  307 (561)
T 3da1_A          252 GVHLVVDQSRFPLRQAVYFDTESD----GRMIFAIPR-EGKTYIGTTDTFYDKDIASPR---MT----------------  307 (561)
T ss_dssp             EEEEEEEGGGSCCSSEEEECCSSS----CCCEEEEEE-TTEEEECCCCEEECSCTTCCC---CC----------------
T ss_pred             EEEEEECCccCCCceEEEeccCCC----CcEEEEEec-CCCEEEcCCCCccCCCcCCCC---CC----------------
Confidence            999998754221111122232 11    224789998 7899999996531 1111100   01                


Q ss_pred             cchhhhhchHHHHhhhcchhHHHHHhhcccCCC--CCCcccCCCeeceEeeC
Q psy7710         358 GLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIE--AGDIQRGPSGVRAQALS  407 (473)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~--~~~i~~~w~G~rp~~~t  407 (473)
                           .++         ++.+++.+.++||.+.  ..+|+..|+|+||.+.+
T Consensus       308 -----~~~---------i~~ll~~~~~~~P~l~~~~~~v~~~~aGlRPl~~~  345 (561)
T 3da1_A          308 -----VED---------RDYILAAANYMFPSLRLTADDVESSWAGLRPLIHE  345 (561)
T ss_dssp             -----HHH---------HHHHHHHHHHHCTTCCCCTTTEEEEEEEEEEEEEC
T ss_pred             -----HHH---------HHHHHHHHHHhCCCCCCChhhEEEEeEEeccccCC
Confidence                 111         3456799999999987  78999999999998644

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.60  E-value=1.7e-14  Score=141.10  Aligned_cols=165  Identities=16%  Similarity=0.223  Sum_probs=105.3

Q ss_pred             CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcc-eEEeeccCCC--------chhHHHHHHHh
Q psy7710          55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSG-VVHAGIYYKP--------GTLKAKLCVEG  125 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g-~~~~~~~~~~--------~~~~~~~~~~~  125 (473)
                      ..++||+|||||++|+++|+.|+++  |.+|+|+|+.+.+++.......| +........+        ......+....
T Consensus        25 ~~~~dViIIGgG~AGl~aA~~La~~--G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~  102 (417)
T 3v76_A           25 AEKQDVVIIGAGAAGMMCAIEAGKR--GRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYR  102 (417)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcC
Confidence            3568999999999999999999999  99999999997665322100011 1111100001        00111111111


Q ss_pred             HHHHHHHHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHH
Q psy7710         126 MNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGL  205 (473)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  205 (473)
                                                     .......+...|+ ......             .+.++ +   ......
T Consensus       103 -------------------------------~~~~~~~~~~~Gi-~~~~~~-------------~g~~~-~---~~~~~~  133 (417)
T 3v76_A          103 -------------------------------PQDFVALVERHGI-GWHEKT-------------LGQLF-C---DHSAKD  133 (417)
T ss_dssp             -------------------------------HHHHHHHHHHTTC-CEEECS-------------TTEEE-E---SSCHHH
T ss_pred             -------------------------------HHHHHHHHHHcCC-CcEEee-------------CCEEe-e---CCCHHH
Confidence                                           1122223333343 111100             11112 1   234567


Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh----------HHHHHhcCCCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA----------DEMALKSGCSL  271 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s----------~~l~~~~g~~~  271 (473)
                      +.+.|.+.+++.|++|+++++|++|..+++++.|++.+| +++||.||+|+|.+|          ..+++.+|+.+
T Consensus       134 l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~VIlAtG~~S~p~~gs~g~g~~la~~~G~~i  208 (417)
T 3v76_A          134 IIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-TVDAASLVVASGGKSIPKMGATGLAYRIAEQFGLPV  208 (417)
T ss_dssp             HHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-EEEESEEEECCCCSSCGGGTCCCHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-EEEeeEEEECCCCccCCCCCCCcHHHHHHHHCCCCE
Confidence            888999999999999999999999998888899999988 999999999999997          57888888763

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.58  E-value=1.4e-14  Score=143.83  Aligned_cols=178  Identities=20%  Similarity=0.254  Sum_probs=106.1

Q ss_pred             CCCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHH
Q psy7710          54 SPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYF  133 (473)
Q Consensus        54 ~~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (473)
                      ...++||+|||||++|+++|+.|+++  |.+|+|||+.+.+++. +..+++..........  .            .++.
T Consensus        23 ~~~~~dVvIIGgG~aGl~aA~~la~~--G~~V~llEk~~~~g~~-~~~sg~g~~~~~~~~~--~------------~~~~   85 (447)
T 2i0z_A           23 NAMHYDVIVIGGGPSGLMAAIGAAEE--GANVLLLDKGNKLGRK-LAISGGGRCNVTNRLP--L------------DEIV   85 (447)
T ss_dssp             --CCCSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCHH-HHHTGGGTCCCEECSC--H------------HHHH
T ss_pred             ccCCCCEEEECCcHHHHHHHHHHHHC--CCCEEEEECCCCCCce-eEEeCCCceeccCccc--H------------HHHH
Confidence            34568999999999999999999999  8999999998655432 1111110000000000  0            0011


Q ss_pred             HhcCCCCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHH
Q psy7710         134 DKRNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGE  212 (473)
Q Consensus       134 ~~~~~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~  212 (473)
                      ..+...    +.+.  ... ......+..+++...|+ ......             .+.++ |..  .....+.+.|.+
T Consensus        86 ~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~G~-~~~~~~-------------~g~~~-p~~--~~~~~l~~~L~~  142 (447)
T 2i0z_A           86 KHIPGN----GRFL--YSAFSIFNNEDIITFFENLGV-KLKEED-------------HGRMF-PVS--NKAQSVVDALLT  142 (447)
T ss_dssp             HTCTBT----GGGG--HHHHHHSCHHHHHHHHHHTTC-CEEECG-------------GGEEE-ETT--CCHHHHHHHHHH
T ss_pred             HHhccC----hHHH--HHHHHhcCHHHHHHHHHhcCC-ceEEee-------------CCEEE-CCC--CCHHHHHHHHHH
Confidence            111000    0000  000 00001122333444454 221100             11111 111  134778899999


Q ss_pred             HHHHcCcEEEeCceEEEEEEcCCe-EEEEcCCCcEEEcCEEEEcCCcCh----------HHHHHhcCCCC
Q psy7710         213 EFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQA----------DEMALKSGCSL  271 (473)
Q Consensus       213 ~~~~~Gv~i~~~~~V~~i~~~~~~-v~v~~~~g~~i~ad~VV~aaG~~s----------~~l~~~~g~~~  271 (473)
                      .+++.|++|+++++|++|..+++. +.|++.+|.+++||.||+|+|+++          ..+++.+|++.
T Consensus       143 ~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~VVlAtGg~s~~~~g~tG~g~~la~~~G~~~  212 (447)
T 2i0z_A          143 RLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHTI  212 (447)
T ss_dssp             HHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTCCE
T ss_pred             HHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCEEEECCCCCcCCCCCCCcHHHHHHHHCCCCc
Confidence            999999999999999999977766 778888886699999999999998          68889998763

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.57  E-value=5.2e-14  Score=137.57  Aligned_cols=164  Identities=16%  Similarity=0.242  Sum_probs=97.8

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK  135 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (473)
                      ++|||+|||||++|+++|+.|+++  |++|+|+||.+.++..  ...++.+.+.                      ..++
T Consensus         3 e~yDViIVGaGpaGl~~A~~La~~--G~~V~v~Er~~~~~~~--~~~g~~l~~~----------------------~l~~   56 (397)
T 3oz2_A            3 ETYDVLVVGGGPGGSTAARYAAKY--GLKTLMIEKRPEIGSP--VRCGEGLSKG----------------------ILNE   56 (397)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSTTCS--CCSCCEEETH----------------------HHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCCCCCCC--CceecccCHH----------------------HHHH
Confidence            359999999999999999999999  9999999998665432  1222333211                      1122


Q ss_pred             cCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhh-cCCcccceeEecCCccceeHHHHHHHHHHHH
Q psy7710         136 RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTI-EPYCKGVKAIHSPNTGIVDWGLVTRVMGEEF  214 (473)
Q Consensus       136 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  214 (473)
                      +++...... +.....                   ...+......... .+...    ........++...+...|.+.+
T Consensus        57 l~~~~~~~~-~~~~~~-------------------~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~R~~~~~~L~~~a  112 (397)
T 3oz2_A           57 ADIKADRSF-IANEVK-------------------GARIYGPSEKRPIILQSEK----AGNEVGYVLERDKFDKHLAALA  112 (397)
T ss_dssp             TTCCCCTTT-EEEEES-------------------EEEEECTTCSSCEEEECSS----SSCCCEEEECHHHHHHHHHHHH
T ss_pred             cCCCchhhh-hhcccc-------------------eEEEEeCCCceEeeccccc----cCCceeEEEEHHHHHHHHHHHH
Confidence            222111000 000000                   0111111000000 00000    0001112456678888999999


Q ss_pred             HHcCcEEEeCceEEEEEEcCCeEE-EEc-CCC--cEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710         215 CELGGEIRLNQQVESFKENPESVT-IST-KQG--DHLESSYALVCAGLQADEMALKSGCS  270 (473)
Q Consensus       215 ~~~Gv~i~~~~~V~~i~~~~~~v~-v~~-~~g--~~i~ad~VV~aaG~~s~~l~~~~g~~  270 (473)
                      .+.|++++++++|+++..+++.+. +.. .++  .+++||.||.|.|.+| .+.+.+|+.
T Consensus       113 ~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S-~vr~~~g~~  171 (397)
T 3oz2_A          113 AKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADGFES-EFGRWAGLK  171 (397)
T ss_dssp             HHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECCCTTC-HHHHHHTCG
T ss_pred             HhcCcEEeeeeeeeeeeeccceeeeeeecccccceEEEEeEEEeCCcccc-HHHHHcCCC
Confidence            999999999999999988877654 221 222  4689999999999998 467777765

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.55  E-value=2.6e-13  Score=133.91  Aligned_cols=72  Identities=17%  Similarity=0.212  Sum_probs=61.5

Q ss_pred             cceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeE--EEEcCCCc--EEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710         199 GIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESV--TISTKQGD--HLESSYALVCAGLQADEMALKSGCSL  271 (473)
Q Consensus       199 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v--~v~~~~g~--~i~ad~VV~aaG~~s~~l~~~~g~~~  271 (473)
                      ..+++..+...|.+.+++.|++|+++++|+++..+++++  .+++.+|.  +++||.||.|+|.++ .+.+.+|++.
T Consensus       101 ~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s-~l~~~~g~~~  176 (421)
T 3nix_A          101 WQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGYGR-VIPRMFGLDK  176 (421)
T ss_dssp             EECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGGGC-HHHHHTTCEE
T ss_pred             eEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCCch-hhHHhcCCCC
Confidence            357788999999999999999999999999999877654  56778885  699999999999998 6778888764

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.53  E-value=1.3e-13  Score=134.57  Aligned_cols=163  Identities=13%  Similarity=0.196  Sum_probs=105.0

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcc---eEEeecc------CCCchhHHHHHHHhHH
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSG---VVHAGIY------YKPGTLKAKLCVEGMN  127 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g---~~~~~~~------~~~~~~~~~~~~~~~~  127 (473)
                      ++||+|||||++|+++|+.|+++  |.+|+|+|+.+.+|+.......|   ..+.+..      ..+......+...   
T Consensus         4 ~~dViIIGgG~aGl~aA~~la~~--G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~---   78 (401)
T 2gqf_A            4 YSENIIIGAGAAGLFCAAQLAKL--GKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARY---   78 (401)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHS---
T ss_pred             CCCEEEECCcHHHHHHHHHHHhC--CCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhC---
Confidence            58999999999999999999999  99999999986564321100000   1111100      0000000000000   


Q ss_pred             HHHHHHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHH
Q psy7710         128 LAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVT  207 (473)
Q Consensus       128 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  207 (473)
                                                  ......+.+...|+ .....+             .+.++ |..   ++..+.
T Consensus        79 ----------------------------~~~~~~~~~~~~Gi-~~~~~~-------------~g~~~-p~~---~~~~l~  112 (401)
T 2gqf_A           79 ----------------------------TNWDFISLVAEQGI-TYHEKE-------------LGQLF-CDE---GAEQIV  112 (401)
T ss_dssp             ----------------------------CHHHHHHHHHHTTC-CEEECS-------------TTEEE-ETT---CTHHHH
T ss_pred             ----------------------------CHHHHHHHHHhCCC-ceEECc-------------CCEEc-cCC---CHHHHH
Confidence                                        01122334444555 222110             11122 221   567788


Q ss_pred             HHHHHHHHHcCcEEEeCceEEEEEEc----CCeEEEEcCCCcEEEcCEEEEcCCcCh----------HHHHHhcCCCC
Q psy7710         208 RVMGEEFCELGGEIRLNQQVESFKEN----PESVTISTKQGDHLESSYALVCAGLQA----------DEMALKSGCSL  271 (473)
Q Consensus       208 ~~l~~~~~~~Gv~i~~~~~V~~i~~~----~~~v~v~~~~g~~i~ad~VV~aaG~~s----------~~l~~~~g~~~  271 (473)
                      +.|.+.+++.|++++++++|+++..+    ++.+.|++.++ +++||.||+|+|.++          ..+++.+|++.
T Consensus       113 ~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i~ad~VVlAtG~~s~p~~g~~G~g~~la~~~G~~i  189 (401)
T 2gqf_A          113 EMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-QWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGIPV  189 (401)
T ss_dssp             HHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-EEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-EEECCEEEECCCCccCCCCCCChHHHHHHHHCCCCc
Confidence            89999999999999999999999976    56688888887 899999999999997          47888888764

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.53  E-value=3e-13  Score=138.23  Aligned_cols=191  Identities=16%  Similarity=0.095  Sum_probs=111.4

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHH-HHhHH-HHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLC-VEGMN-LAYEYF  133 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~  133 (473)
                      .++||+|||||++|+++|+.|+++  |.+|+||||.+.+ ++.|..+.|.+.....    .....+. ..+.+ .+.++.
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~~--G~~V~vlEk~~~~-gg~s~~s~gg~~~~~~----~~~~~~g~~ds~~~~~~~~~  192 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKKA--GANVILVDKAPFS-GGNSMISAGGMNAVGT----KQQTAHGVEDKVEWFIEDAM  192 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHH--TCCEEEECSSSSS-CTTGGGCCSCEECSSC----HHHHHTTCCCCHHHHHHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC--CCcEEEEeCCCCC-CCcccccCceeEccCC----HHHHHhCCCCCHHHHHHHHH
Confidence            568999999999999999999999  9999999999544 5666666665543211    0000000 00111 111111


Q ss_pred             HhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHH
Q psy7710         134 DKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEE  213 (473)
Q Consensus       134 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~  213 (473)
                      +. +........+.    .-.+.....++++...|+ .+..+.      .... ......+.+.++.+.+..+...|.+.
T Consensus       193 ~~-~~~~~~~~~~~----~~~~~~~~~i~~l~~~Gv-~~~~~~------~~~g-~~~~r~~~~~~~~~~~~~l~~~L~~~  259 (566)
T 1qo8_A          193 KG-GRQQNDIKLVT----ILAEQSADGVQWLESLGA-NLDDLK------RSGG-ARVDRTHRPHGGKSSGPEIIDTLRKA  259 (566)
T ss_dssp             HH-TTTCSCHHHHH----HHHHHHHHHHHHHHHTTC-CCCEEE------CCTT-CSSCCEEECSSSSCHHHHHHHHHHHH
T ss_pred             Hh-cCCCCCHHHHH----HHHhccHHHHHHHHhcCC-cccccc------ccCC-CCCCceeecCCCCCCHHHHHHHHHHH
Confidence            11 10000000000    000112233445555665 332211      0000 01122344555556788899999999


Q ss_pred             HHHcCcEEEeCceEEEEEEcC-CeE---EEEcCCCc--EEEcCEEEEcCCcChH--HHHHh
Q psy7710         214 FCELGGEIRLNQQVESFKENP-ESV---TISTKQGD--HLESSYALVCAGLQAD--EMALK  266 (473)
Q Consensus       214 ~~~~Gv~i~~~~~V~~i~~~~-~~v---~v~~~~g~--~i~ad~VV~aaG~~s~--~l~~~  266 (473)
                      +++.|++|+++++|++|..++ +.+   .+.+.+|.  +++||.||+|+|+++.  ++++.
T Consensus       260 ~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~~~~~~~~  320 (566)
T 1qo8_A          260 AKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGMNKEMIAY  320 (566)
T ss_dssp             HHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTTCHHHHHH
T ss_pred             HHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCcccCHHHHHH
Confidence            999999999999999999877 643   34444664  6899999999999963  44443

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.49  E-value=1.2e-12  Score=128.41  Aligned_cols=69  Identities=14%  Similarity=0.230  Sum_probs=58.1

Q ss_pred             cceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhc-CCC
Q psy7710         199 GIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKS-GCS  270 (473)
Q Consensus       199 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~-g~~  270 (473)
                      ..++...+.+.|.+.+.+  ++|+++++|+++..+++++.|++.+|.+++||.||.|+|.+|. +.+.+ |..
T Consensus       122 ~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~-vr~~l~~~~  191 (407)
T 3rp8_A          122 CPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSA-LRPWVLGFT  191 (407)
T ss_dssp             EEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCCTTCS-SHHHHHSSC
T ss_pred             EEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECCCcChH-HHHHhcCCC
Confidence            356778888999988876  8999999999999999999999999888999999999999974 33444 654

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.48  E-value=1.6e-12  Score=132.18  Aligned_cols=71  Identities=17%  Similarity=0.253  Sum_probs=62.1

Q ss_pred             ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCC----eEEEEcCCC---cEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710         200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPE----SVTISTKQG---DHLESSYALVCAGLQADEMALKSGCSL  271 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~----~v~v~~~~g---~~i~ad~VV~aaG~~s~~l~~~~g~~~  271 (473)
                      .++...+...|.+.+++.|++|+++++|+++..+++    ++.+++.++   .+++||+||.|+|.+| .+.+.+|++.
T Consensus       116 ~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S-~vR~~lgi~~  193 (535)
T 3ihg_A          116 MLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRS-LVRESLGIGR  193 (535)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTC-HHHHHTTCCE
T ss_pred             ccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCCCeEEEEeCEEEECCCCcc-hHHHHcCCCc
Confidence            567788999999999999999999999999998887    888776654   5899999999999998 7888998764

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.47  E-value=3.8e-13  Score=137.02  Aligned_cols=72  Identities=19%  Similarity=0.364  Sum_probs=63.1

Q ss_pred             cceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEc--CCC-cEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710         199 GIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTIST--KQG-DHLESSYALVCAGLQADEMALKSGCSL  271 (473)
Q Consensus       199 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~--~~g-~~i~ad~VV~aaG~~s~~l~~~~g~~~  271 (473)
                      ..++...+.+.|.+.+++.|++|+++++|+++..+++++.|++  .+| .+++||+||.|+|.+| .+.+.+|++.
T Consensus       143 ~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~S-~vR~~lGi~~  217 (570)
T 3fmw_A          143 GLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGGRS-TVRRLAADRF  217 (570)
T ss_dssp             BCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCSSC-HHHHHTTCCC
T ss_pred             EEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCCCc-hHHHHcCCCC
Confidence            3567788999999999999999999999999998888887776  677 6899999999999999 7888888875

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.47  E-value=6.6e-13  Score=131.15  Aligned_cols=60  Identities=13%  Similarity=0.155  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEE-EEcCCCcEEEcCEEEEcCCcCh-HHHH
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQA-DEMA  264 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~~~~g~~i~ad~VV~aaG~~s-~~l~  264 (473)
                      ..+.+.|.+.++++|++|+++++|++|..+++++. |+++ |.+++||.||+|+|.+. ..|+
T Consensus       196 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~~-g~~~~ad~VV~a~~~~~~~~ll  257 (425)
T 3ka7_A          196 KGIIDALETVISANGGKIHTGQEVSKILIENGKAAGIIAD-DRIHDADLVISNLGHAATAVLC  257 (425)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEET-TEEEECSEEEECSCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCEEEECCceeEEEEECCEEEEEEEC-CEEEECCEEEECCCHHHHHHhc
Confidence            67899999999999999999999999998888776 7776 55899999999999984 3444

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.47  E-value=2.2e-12  Score=132.02  Aligned_cols=185  Identities=16%  Similarity=0.113  Sum_probs=105.9

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHH-HHhH-HHHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLC-VEGM-NLAYEYF  133 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~  133 (473)
                      .++||+|||||++|+++|+.|+++  |.+|+||||.+.+ ++.|..+.|.+....    ......+. ..+. ..+.++.
T Consensus       125 ~~~DVvVVGaG~aGl~aA~~la~~--G~~V~vlEk~~~~-gg~s~~a~gg~~~~~----~~~~~~~g~~ds~~~~~~~~~  197 (571)
T 1y0p_A          125 DTVDVVVVGSGGAGFSAAISATDS--GAKVILIEKEPVI-GGNAKLAAGGMNAAW----TDQQKAKKITDSPELMFEDTM  197 (571)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSS-CTTGGGCCSCEECSS----CHHHHHTTCCCCHHHHHHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC--CCcEEEEeCCCCC-CCchhhcCceEEeCC----CHHHHHhCCCCCHHHHHHHHH
Confidence            468999999999999999999999  9999999999544 455555555543221    00000000 0001 1111111


Q ss_pred             HhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHH
Q psy7710         134 DKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEE  213 (473)
Q Consensus       134 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~  213 (473)
                      +........ ..+.    .-.+.....++++...|+ .+..+.      .... ......+.+.++...+..+...|.+.
T Consensus       198 ~~g~~~~~~-~~~~----~~~~~~~~~~~~l~~~Gv-~~~~~~------~~~g-~~~~r~~~~~~g~~~g~~l~~~L~~~  264 (571)
T 1y0p_A          198 KGGQNINDP-ALVK----VLSSHSKDSVDWMTAMGA-DLTDVG------MMGG-ASVNRAHRPTGGAGVGAHVVQVLYDN  264 (571)
T ss_dssp             HHTTTCSCH-HHHH----HHHHHHHHHHHHHHHTTC-CCCEEE------CCTT-CSSCCEEESTTTCCHHHHHHHHHHHH
T ss_pred             HhcCCCCCH-HHHH----HHHHccHHHHHHHHhcCC-CCccCc------ccCC-cCCCeeEecCCCCCCHHHHHHHHHHH
Confidence            110000000 0000    000111233444555555 222110      0000 01222344445556678899999999


Q ss_pred             HHHcCcEEEeCceEEEEEEcC-CeE---EEEcCCCc--EEEcCEEEEcCCcCh
Q psy7710         214 FCELGGEIRLNQQVESFKENP-ESV---TISTKQGD--HLESSYALVCAGLQA  260 (473)
Q Consensus       214 ~~~~Gv~i~~~~~V~~i~~~~-~~v---~v~~~~g~--~i~ad~VV~aaG~~s  260 (473)
                      +++.|++|+++++|++|..++ +.+   .+.+.+|.  +++||.||+|+|+++
T Consensus       265 ~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~  317 (571)
T 1y0p_A          265 AVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFA  317 (571)
T ss_dssp             HHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             HHhcCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCcc
Confidence            999999999999999999876 543   34443564  689999999999986

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.46  E-value=3.4e-13  Score=133.06  Aligned_cols=64  Identities=14%  Similarity=0.136  Sum_probs=53.2

Q ss_pred             eEecCCccceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         192 AIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      +.+.+..|   +..+.+.|.+.++++|++|+++++|++|..+++++ |.++ |.+++||.||+|+|.+.
T Consensus       180 g~~~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~v-V~~~-g~~~~ad~Vv~a~~~~~  243 (421)
T 3nrn_A          180 GPGLIRGG---CKAVIDELERIIMENKGKILTRKEVVEINIEEKKV-YTRD-NEEYSFDVAISNVGVRE  243 (421)
T ss_dssp             SCEEETTC---HHHHHHHHHHHHHTTTCEEESSCCEEEEETTTTEE-EETT-CCEEECSEEEECSCHHH
T ss_pred             CcceecCC---HHHHHHHHHHHHHHCCCEEEcCCeEEEEEEECCEE-EEeC-CcEEEeCEEEECCCHHH
Confidence            34444444   47889999999999999999999999999888888 7654 55899999999999983

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.46  E-value=1.4e-12  Score=131.53  Aligned_cols=201  Identities=18%  Similarity=0.122  Sum_probs=102.9

Q ss_pred             CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHH-HHhHHHHHHHH
Q psy7710          55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLC-VEGMNLAYEYF  133 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  133 (473)
                      +.++||+|||+|++|+++|+.|+++  |.+|+||||.+ ..+++|..+.|.++....   ......+. ..+.+.+.+..
T Consensus        39 ~~~~DVvVVGaG~AGl~AA~~aa~~--G~~V~vlEk~~-~~GG~s~~s~G~~~~~~~---~~~~~~~g~~ds~~~~~~~~  112 (510)
T 4at0_A           39 DYEADVVVAGYGIAGVAASIEAARA--GADVLVLERTS-GWGGATALAGGFIYLGGG---TPLQKACGFDDSPENMKTFM  112 (510)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSS-SSCTTGGGSCCCEECCSS---CHHHHHTTCCCCHHHHHHHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHC--CCcEEEEeCCC-CCCCcchhcCcceecCCC---CHHHHHhCCCCCHHHHHHHH
Confidence            4679999999999999999999999  99999999995 445666667766543210   00000000 00011111111


Q ss_pred             HhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceee--C---------------HHHHHhhcCCc-cc-ceeEe
Q psy7710         134 DKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLV--S---------------AEEIKTIEPYC-KG-VKAIH  194 (473)
Q Consensus       134 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l--~---------------~~~~~~~~p~~-~~-~~~~~  194 (473)
                      ............+.    .-.+...+.++++.+.|+ .+...  .               ..+....++.. .. ..+..
T Consensus       113 ~~~~~~~~~~~~~~----~~~~~~~~~i~~l~~~Gv-~~~~~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~r~~~  187 (510)
T 4at0_A          113 MAALGPGADEEKIT----DYCEGSVEHYNWLVDCGV-PFKESFWGEPGWEPPFDDGLMYSGGENAAPFNEIAAPAPRGHV  187 (510)
T ss_dssp             HHHSCSSCCHHHHH----HHHHTHHHHHHHHHHTTC-CCCSCEECSSSSSCSSSCSEECCSSTTSTTGGGTSCCCCCEEC
T ss_pred             HHHhCCCCCHHHHH----HHHHhhHHHHHHHHHcCC-eecccccCCcccccCCcccccccCcccccccccccCcccceee
Confidence            11000000000000    000111223334444444 11100  0               00000000000 00 00111


Q ss_pred             cCC----ccceeHH-HHHHHHHHHHHHcCcEEEeCceEEEEEEc-CCeE-EEEcC-CC--cEEEcC-EEEEcCCcCh--H
Q psy7710         195 SPN----TGIVDWG-LVTRVMGEEFCELGGEIRLNQQVESFKEN-PESV-TISTK-QG--DHLESS-YALVCAGLQA--D  261 (473)
Q Consensus       195 ~~~----~~~~~~~-~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v-~v~~~-~g--~~i~ad-~VV~aaG~~s--~  261 (473)
                      .+.    .+..... .+...|.+.+++.|++|+++++|++|..+ ++.+ .|.+. ++  .+++|+ .||+|+|+++  .
T Consensus       188 ~~~~~~~~g~~~g~~~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~~n~  267 (510)
T 4at0_A          188 PQMDGKRTGEKGGGYMLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFAYND  267 (510)
T ss_dssp             CCCSSCBTTTBCTTHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCTTCH
T ss_pred             ecccccccccCCCHHHHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChhhCH
Confidence            110    2223333 78999999999999999999999999987 4443 24332 23  258995 9999999995  3


Q ss_pred             HHHHh
Q psy7710         262 EMALK  266 (473)
Q Consensus       262 ~l~~~  266 (473)
                      ++++.
T Consensus       268 ~m~~~  272 (510)
T 4at0_A          268 KMIEA  272 (510)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            45443

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.46  E-value=2.5e-12  Score=129.80  Aligned_cols=57  Identities=21%  Similarity=0.342  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEE-EEcCCCcEEEcCEEEEcCCcCh
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      ..+.+.|.+.++++|++|+++++|++|..+++++. |++.+|++++||.||.+++.+.
T Consensus       221 ~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~~  278 (501)
T 4dgk_A          221 GALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVH  278 (501)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC---
T ss_pred             cchHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHHH
Confidence            67899999999999999999999999999888775 8999999999999999998873

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.45  E-value=1.7e-12  Score=130.51  Aligned_cols=173  Identities=18%  Similarity=0.266  Sum_probs=108.0

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHH--
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYF--  133 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  133 (473)
                      ..+||+|||||++|+++|+.|++.  |++|+|||+++.++...                       + .....|....  
T Consensus       106 ~~~DVVIVGgGpaGL~aA~~La~~--G~kV~VlEr~~~~~~R~-----------------------~-~~~g~w~~~~~~  159 (549)
T 3nlc_A          106 LTERPIVIGFGPCGLFAGLVLAQM--GFNPIIVERGKEVRERT-----------------------K-DTFGFWRKRTLN  159 (549)
T ss_dssp             CCCCCEEECCSHHHHHHHHHHHHT--TCCCEEECSSCCHHHHH-----------------------H-HHHHHHHHCCCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC--CCeEEEEEccCcccccc-----------------------c-chhccccccccc
Confidence            458999999999999999999999  99999999985443110                       0 0000011000  


Q ss_pred             HhcCCCCc-------ccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHH
Q psy7710         134 DKRNIPYK-------KCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLV  206 (473)
Q Consensus       134 ~~~~~~~~-------~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  206 (473)
                      ....+.+.       ..+.+...............+.+..+|. ..+.+..                ..+..+......+
T Consensus       160 ~~~~i~~g~gGag~~sdgkl~~~i~~~~~~~~~v~~~~~~~G~-~~~i~~~----------------~~p~~G~~~~~~l  222 (549)
T 3nlc_A          160 PESNVQFGEGGAGTFSDGKLYSQVKDPNFYGRKVITEFVEAGA-PEEILYV----------------SKPHIGTFKLVTM  222 (549)
T ss_dssp             TTSSSSSSTTGGGTTSCCCCCCCSCCTTCHHHHHHHHHHHTTC-CGGGGTB----------------SSCCCCHHHHHHH
T ss_pred             ccccceeccCCcccccCCceEEEeccccccHHHHHHHHHHcCC-CceEeec----------------cccccccchHHHH
Confidence            00000010       1112211111111112334444555565 2221110                0233344556788


Q ss_pred             HHHHHHHHHHcCcEEEeCceEEEEEEcCCeE-EEEcCCCcEEEcCEEEEcCCcChH---HHHHhcCCCC
Q psy7710         207 TRVMGEEFCELGGEIRLNQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQAD---EMALKSGCSL  271 (473)
Q Consensus       207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v-~v~~~~g~~i~ad~VV~aaG~~s~---~l~~~~g~~~  271 (473)
                      ...|.+.+++.|++|+++++|++|..+++.+ .|++.+|.+++||.||+|+|.++.   .++...|+..
T Consensus       223 ~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~Ad~VVlA~G~~s~~~~~~l~~~Gi~~  291 (549)
T 3nlc_A          223 IEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVGHSARDTFEMLHERGVYM  291 (549)
T ss_dssp             HHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEEECSCEEECCCTTCHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhHHHHHHHcCCCc
Confidence            9999999999999999999999999887654 488888878999999999999985   3566677653

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.45  E-value=2.7e-12  Score=128.99  Aligned_cols=71  Identities=20%  Similarity=0.353  Sum_probs=60.8

Q ss_pred             ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCc---EEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710         200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGD---HLESSYALVCAGLQADEMALKSGCSL  271 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~---~i~ad~VV~aaG~~s~~l~~~~g~~~  271 (473)
                      .++...+.+.|.+.+++.|++|+++++|+++..+++++.|++.++.   +++||+||.|.|.+| .+.+.+|++.
T Consensus       102 ~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S-~VR~~lg~~~  175 (500)
T 2qa1_A          102 TVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRS-SVRKAAGFDF  175 (500)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTC-HHHHHTTCCC
T ss_pred             ecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcch-HHHHHcCCCc
Confidence            4566788899999999999999999999999998888887776553   799999999999998 4778888764

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.45  E-value=6.7e-12  Score=125.56  Aligned_cols=55  Identities=11%  Similarity=0.168  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      ..+.+.|.+.+.+  ++|+++++|++|..+++++.|++.+|.+++||.||+|++.+.
T Consensus       235 ~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vi~a~p~~~  289 (470)
T 3i6d_A          235 QTLVEEIEKQLKL--TKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPHKA  289 (470)
T ss_dssp             HHHHHHHHHTCCS--EEEECSCCEEEEEECSSSEEEEESSSCEEEESEEEECSCHHH
T ss_pred             HHHHHHHHHhcCC--CEEEeCCceEEEEEcCCeEEEEECCCCEEECCEEEECCCHHH
Confidence            3455555554432  799999999999998888999999987899999999999874

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=99.45  E-value=2.1e-12  Score=133.10  Aligned_cols=185  Identities=12%  Similarity=0.133  Sum_probs=102.8

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCC---CchhHH---H---------
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYK---PGTLKA---K---------  120 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~---~~~~~~---~---------  120 (473)
                      .++||+|||||++|+++|++|+++  |.+|+||||....++.++...+|+........   .+....   .         
T Consensus         4 ~~~DVvVIGgG~AGL~AAl~aae~--G~~V~vlEK~~~~~g~s~~a~GGi~a~~~~~~~g~~ds~~~~~~dt~~~g~~~~   81 (660)
T 2bs2_A            4 QYCDSLVIGGGLAGLRAAVATQQK--GLSTIVLSLIPVKRSHSAAAQGGMQASLGNSKMSDGDNEDLHFMDTVKGSDWGC   81 (660)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTT--TCCEEEECSSCGGGSGGGGCCSCEECCCCCSGGGTTCCHHHHHHHHHHHTTTCS
T ss_pred             ccccEEEECchHHHHHHHHHHHHC--CCcEEEEeccCCCCCcccccCCCeEeccCCcccCCCCCHHHHHHHHHHhcCCCC
Confidence            468999999999999999999999  99999999985333344344444443221110   111110   0         


Q ss_pred             -------HHHHhHHHHHHHHHhcCCCCccc--CeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccce
Q psy7710         121 -------LCVEGMNLAYEYFDKRNIPYKKC--GKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVK  191 (473)
Q Consensus       121 -------~~~~~~~~~~~~~~~~~~~~~~~--g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~  191 (473)
                             ++..+.+.+ ++..+.+++|...  |...+..                .+. ..++++++++..... ....+
T Consensus        82 d~~~v~~~~~~s~~~i-~~L~~~Gv~f~~~~~G~~~~~~----------------~g~-~~~~l~~~e~~~~~~-~~~~g  142 (660)
T 2bs2_A           82 DQKVARMFVNTAPKAI-RELAAWGVPWTRIHKGDRMAII----------------NAQ-KTTITEEDFRHGLIH-SRDFG  142 (660)
T ss_dssp             CHHHHHHHHHHHHHHH-HHHHHTTCCCCBCCSEEEECCC----------------SSC-CCEEEECGGGTTSBC-CBCCT
T ss_pred             CHHHHHHHHHHHHHHH-HHHHHcCCCceecCCCcccccc----------------ccc-ccccccchhhhhhhc-ccccc
Confidence                   000011111 1112233333211  1100000                011 233444444433221 11122


Q ss_pred             eEecCCcc---ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeE---EEE-cCCCc--EEEcCEEEEcCCcChH
Q psy7710         192 AIHSPNTG---IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESV---TIS-TKQGD--HLESSYALVCAGLQAD  261 (473)
Q Consensus       192 ~~~~~~~~---~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v---~v~-~~~g~--~i~ad~VV~aaG~~s~  261 (473)
                      +...+...   ...+..++..|.+.+++.|++|++++.|++|..+++.+   .+. +.+|.  .++||.||+|||+++.
T Consensus       143 g~~~~R~~~~~d~tG~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~  221 (660)
T 2bs2_A          143 GTKKWRTCYTADATGHTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGR  221 (660)
T ss_dssp             TCSSCCEECSTTCHHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGG
T ss_pred             ccccceeEeeCCCCHHHHHHHHHHHHHhCCCEEEECcEEEEEEecCCEEEEEEEEECCCCcEEEEEcCEEEEccCcchh
Confidence            22222111   12256789999999999999999999999998766543   232 35664  4899999999999873

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.43  E-value=3.2e-12  Score=128.39  Aligned_cols=71  Identities=18%  Similarity=0.299  Sum_probs=61.2

Q ss_pred             ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCc---EEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710         200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGD---HLESSYALVCAGLQADEMALKSGCSL  271 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~---~i~ad~VV~aaG~~s~~l~~~~g~~~  271 (473)
                      .++...+.+.|.+.+++.|++|+++++|+++..+++++.|++.++.   +++||+||.|.|.+| .+.+.+|++.
T Consensus       103 ~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S-~VR~~lg~~~  176 (499)
T 2qa2_A          103 AVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRS-TVRKAAGFDF  176 (499)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTC-HHHHHTTCCC
T ss_pred             ecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCccc-HHHHHcCCCC
Confidence            4667888999999999999999999999999998888888776653   799999999999998 4778888764

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.43  E-value=1.5e-11  Score=122.35  Aligned_cols=70  Identities=13%  Similarity=-0.015  Sum_probs=56.8

Q ss_pred             ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEE-EE--cC-CCc--EEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710         200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVT-IS--TK-QGD--HLESSYALVCAGLQADEMALKSGCS  270 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~--~~-~g~--~i~ad~VV~aaG~~s~~l~~~~g~~  270 (473)
                      .++...+.+.|.+.+.+.|++++++++|+++..+++.+. |+  +. +|.  +++||.||.|+|.+|. +.+.+|..
T Consensus        96 ~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~-vr~~l~~~  171 (453)
T 3atr_A           96 ELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRS-FRSKLPPE  171 (453)
T ss_dssp             EECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGGCT-TGGGSCTT
T ss_pred             EEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCchh-hHHhcCCC
Confidence            466788999999999999999999999999998777653 43  33 564  7899999999999984 66677764

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.43  E-value=4.5e-12  Score=129.33  Aligned_cols=73  Identities=16%  Similarity=0.247  Sum_probs=60.4

Q ss_pred             CccceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEc-CCeEEEEcC-CC--cEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710         197 NTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKEN-PESVTISTK-QG--DHLESSYALVCAGLQADEMALKSGCS  270 (473)
Q Consensus       197 ~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~v~~~-~g--~~i~ad~VV~aaG~~s~~l~~~~g~~  270 (473)
                      ....++...+...|.+.+++.|++++++++|+++..+ ++.+.|++. +|  .+++||.||.|+|.+| .+.+.+|++
T Consensus       121 ~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S-~lr~~lg~~  197 (591)
T 3i3l_A          121 HAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVIDAGGSGG-PISRKLGVR  197 (591)
T ss_dssp             CEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEEEECCGGGC-HHHHHHTCE
T ss_pred             eeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEEEECCCCcc-hhHHHcCCC
Confidence            3456788899999999999999999999999999875 556777765 55  5799999999999988 466777764

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.41  E-value=4e-12  Score=124.39  Aligned_cols=71  Identities=10%  Similarity=0.111  Sum_probs=62.6

Q ss_pred             ceeHHHHHHHHHHHHHHc-CcEEEeCceEEEEEEcCCeE--EEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710         200 IVDWGLVTRVMGEEFCEL-GGEIRLNQQVESFKENPESV--TISTKQGDHLESSYALVCAGLQADEMALKSGCSL  271 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~v--~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~  271 (473)
                      .++...+.+.|.+.+++. |++|+++++|+++..+++++  .|++.+|.+++||.||.|+|.+|. +.+.+|++.
T Consensus       103 ~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG~~s~-vr~~lg~~~  176 (399)
T 2x3n_A          103 LMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGIASY-VRRRLLDID  176 (399)
T ss_dssp             ECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCCTTCH-HHHHTSCCC
T ss_pred             cccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCCCChH-HHHHhCCCc
Confidence            467788999999999988 99999999999999888878  888888878999999999999985 777888753

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.40  E-value=7e-12  Score=116.51  Aligned_cols=158  Identities=17%  Similarity=0.139  Sum_probs=95.3

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK  135 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (473)
                      .++||+|||||++|+++|+.|+++ +|.+|+|||+.+.+++++. .+.+.+...                          
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~-~G~~V~viEk~~~~gg~~~-~~~~~~~~~--------------------------   89 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKN-PNVQVAIIEQSVSPGGGAW-LGGQLFSAM--------------------------   89 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTS-TTSCEEEEESSSSCCTTTT-CCSTTCCCE--------------------------
T ss_pred             cccCEEEECccHHHHHHHHHHHHc-CCCeEEEEECCCCCCCcee-cCCcchHHH--------------------------
Confidence            468999999999999999999983 2799999999876654432 221111100                          


Q ss_pred             cCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHH
Q psy7710         136 RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC  215 (473)
Q Consensus       136 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  215 (473)
                                 ... ...       .+.+.+.|+ .+...               +..+.    ..+...+...|.+.+.
T Consensus        90 -----------~~~-~~~-------~~~l~~~G~-~~~~~---------------~~~~~----~~~~~~~~~~l~~~~~  130 (284)
T 1rp0_A           90 -----------IVR-KPA-------HLFLDEIGV-AYDEQ---------------DTYVV----VKHAALFTSTIMSKLL  130 (284)
T ss_dssp             -----------EEE-TTT-------HHHHHHHTC-CCEEC---------------SSEEE----ESCHHHHHHHHHHHHH
T ss_pred             -----------HcC-cHH-------HHHHHHcCC-CcccC---------------CCEEE----ecCHHHHHHHHHHHHH
Confidence                       000 000       011112233 11100               00000    1133556777877776


Q ss_pred             H-cCcEEEeCceEEEEEEcCCeE-EEEcC---------CC-----cEEEcCEEEEcCCc------ChHHHHHhcCCCCCC
Q psy7710         216 E-LGGEIRLNQQVESFKENPESV-TISTK---------QG-----DHLESSYALVCAGL------QADEMALKSGCSLEP  273 (473)
Q Consensus       216 ~-~Gv~i~~~~~V~~i~~~~~~v-~v~~~---------~g-----~~i~ad~VV~aaG~------~s~~l~~~~g~~~~~  273 (473)
                      + .|++++++++|+++..+++.+ .|.+.         ++     .+++||.||+|+|.      ++..++..+|+.  .
T Consensus       131 ~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~~~~~~~~g~~--~  208 (284)
T 1rp0_A          131 ARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMI--D  208 (284)
T ss_dssp             TSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHHHHHHHHTTSS--S
T ss_pred             hcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHHHHHhhhccCC--C
Confidence            5 699999999999999877654 33321         21     47999999999995      334555555543  3


Q ss_pred             ceeeeeeEE
Q psy7710         274 AIVPFRGEY  282 (473)
Q Consensus       274 ~~~p~~g~~  282 (473)
                      ++.|.+|..
T Consensus       209 ~v~~~~g~~  217 (284)
T 1rp0_A          209 HVPGMKALD  217 (284)
T ss_dssp             CCCCCEEEC
T ss_pred             CcCCcCCch
Confidence            667777754

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=99.39  E-value=8.8e-12  Score=127.42  Aligned_cols=187  Identities=10%  Similarity=0.026  Sum_probs=100.6

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK  135 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (473)
                      .++||+|||||++|+++|+.|+++  |.+|+||||.+..++.++...+|+.........+....        .+.+..+.
T Consensus         6 ~~~DVvVVGaG~AGl~AA~~la~~--G~~V~vlEK~~~~~g~s~~a~GGi~~~~~~~~~ds~~~--------~~~d~~~~   75 (588)
T 2wdq_A            6 REFDAVVIGAGGAGMRAALQISQS--GQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEW--------HMYDTVKG   75 (588)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSCGGGSGGGGCCSCEECCCCSSSCCCHHH--------HHHHHHHH
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCCCCCcchhhCCccEEcCCCCCCCCHHH--------HHHHHHHh
Confidence            468999999999999999999999  99999999985444333333444433211111111110        01111111


Q ss_pred             cCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHH-hhcCCcc-------cceeEecCCccceeHHHHH
Q psy7710         136 RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIK-TIEPYCK-------GVKAIHSPNTGIVDWGLVT  207 (473)
Q Consensus       136 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~p~~~-------~~~~~~~~~~~~~~~~~~~  207 (473)
                      ....... ..+.    .-.+.....+.++...|+ .+.......+. ..++...       .....+. .  ...+..+.
T Consensus        76 g~~~~d~-~~v~----~~~~~~~~~i~~l~~~Gv-~f~~~~~g~~~~~~~~g~~~~~~~~~~~r~~~~-~--d~~g~~l~  146 (588)
T 2wdq_A           76 SDYIGDQ-DAIE----YMCKTGPEAILELEHMGL-PFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAA-A--DRTGHALL  146 (588)
T ss_dssp             TTTCSCH-HHHH----HHHHHHHHHHHHHHHTTC-CCCBCTTSSBCEECCTTCBSTTTCSBCCCEECS-T--TCHHHHHH
T ss_pred             cCCCCCH-HHHH----HHHHhHHHHHHHHHHcCC-CcccCCCCcEeeeecCCccccccccCcceEEEc-C--CCCHHHHH
Confidence            0000000 0000    000111233445555665 33222111000 0000000       0011111 1  12357788


Q ss_pred             HHHHHHHHHcCcEEEeCceEEEEEEc-CCeE-EEE---cCCCc--EEEcCEEEEcCCcChH
Q psy7710         208 RVMGEEFCELGGEIRLNQQVESFKEN-PESV-TIS---TKQGD--HLESSYALVCAGLQAD  261 (473)
Q Consensus       208 ~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v-~v~---~~~g~--~i~ad~VV~aaG~~s~  261 (473)
                      ..|.+.+++.|++|++++.|++|..+ ++.+ .|.   +.+|.  .++|+.||+|+|+++.
T Consensus       147 ~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~~  207 (588)
T 2wdq_A          147 HTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGR  207 (588)
T ss_dssp             HHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCGG
T ss_pred             HHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCcc
Confidence            99999999999999999999999985 5433 333   24563  5899999999999864

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=99.38  E-value=9.7e-12  Score=127.28  Aligned_cols=186  Identities=11%  Similarity=-0.001  Sum_probs=102.2

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccC-CCchhHHHHHHHhHHHHHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYY-KPGTLKAKLCVEGMNLAYEYFD  134 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  134 (473)
                      .++||+|||||++|+++|+.|+++  |.+|+||||.. +.++.|..+.|.+...... ..+.+.. .       +.+..+
T Consensus        17 ~~~DVvVVG~G~AGl~AAl~aa~~--G~~V~vlEK~~-~~~g~s~~a~GGi~a~~~~~~~ds~~~-~-------~~dtl~   85 (621)
T 2h88_A           17 HEFDAVVVGAGGAGLRAAFGLSEA--GFNTACVTKLF-PTRSHTVAAQGGINAALGNMEDDNWRW-H-------FYDTVK   85 (621)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSC-GGGSGGGGCCSCEECCCCSSSCCCHHH-H-------HHHHHH
T ss_pred             ccCCEEEECccHHHHHHHHHHHHC--CCcEEEEeccC-CCCCCchhhCCCcEecCCCCCCCCHHH-H-------HHHHHH
Confidence            468999999999999999999999  99999999984 5445554444444432211 1222211 1       011111


Q ss_pred             hcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHH-hhcCCccc--------ceeEecCCccceeHHH
Q psy7710         135 KRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIK-TIEPYCKG--------VKAIHSPNTGIVDWGL  205 (473)
Q Consensus       135 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~p~~~~--------~~~~~~~~~~~~~~~~  205 (473)
                      ...  +.....+..   .-.+...+.+.++..+|+ .+.......+. ..++....        ....+..   ...+..
T Consensus        86 ~g~--~l~d~~~v~---~l~~~s~~~i~~L~~~Gv-~f~~~~~g~~~~~~~gg~s~~~g~~~~~~R~~~~~---d~tG~~  156 (621)
T 2h88_A           86 GSD--WLGDQDAIH---YMTEQAPAAVIELENYGM-PFSRTEEGKIYQRAFGGQSLQFGKGGQAHRCCCVA---DRTGHS  156 (621)
T ss_dssp             HTT--TCSCHHHHH---HHHHHHHHHHHHHHHTTC-CCCBCTTSSBCEECCTTCBSTTTTSCBCCCEECST---TCHHHH
T ss_pred             hcC--CCCCHHHHH---HHHHHHHHHHHHHHHcCC-CcccCCCCceeccccCcccccccCCCcceeEEEec---CCCHHH
Confidence            000  000000000   000112233445555665 33222111000 00010000        0111111   113567


Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEE-EE--c-CCCc--EEEcCEEEEcCCcChH
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVT-IS--T-KQGD--HLESSYALVCAGLQAD  261 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~--~-~~g~--~i~ad~VV~aaG~~s~  261 (473)
                      ++..|.+.+.+.|++|++++.|++|..+++.+. |.  . .+|.  .++|+.||+|||+++.
T Consensus       157 l~~~L~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~  218 (621)
T 2h88_A          157 LLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYGR  218 (621)
T ss_dssp             HHHHHHHHHTTSCCEEEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCGG
T ss_pred             HHHHHHHHHHhCCCEEEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcccc
Confidence            889999999999999999999999987766432 33  2 4563  6899999999999874

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.38  E-value=2.2e-11  Score=124.39  Aligned_cols=193  Identities=20%  Similarity=0.168  Sum_probs=105.8

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHH-HHHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMN-LAYEYFD  134 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  134 (473)
                      ..+||+|||+|++|+++|+.|+++  |.+|+|+|+.+.+ ++.+..+.|.+...........  .+ ..+.+ .+.++.+
T Consensus       125 ~~~~v~viG~G~aG~~aa~~~~~~--g~~v~~~e~~~~~-~~~~~~a~gg~~~~~~~~~~~~--g~-~ds~~~~~~~~~~  198 (572)
T 1d4d_A          125 ETTDVVIIGSGGAGLAAAVSARDA--GAKVILLEKEPIP-GGNTKLAAGGMNAAETKPQAKL--GI-EDKKQIMIDDTMK  198 (572)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHSS--SCCEEEECSSSSS-CTTGGGCCSCEECCSSSTTGGG--TC-CCCTHHHHHHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC--CCcEEEEecCCCC-CcchhhhCCeeEccCCHHHHHh--CC-CCCHHHHHHHHHH
Confidence            357999999999999999999999  8999999999655 4555555555543211000000  00 00000 1111111


Q ss_pred             hcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHH
Q psy7710         135 KRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEF  214 (473)
Q Consensus       135 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  214 (473)
                       .+........+.    .-.+.....++++...|+ .+..+.      .... ......+.+.++......+...|.+.+
T Consensus       199 -~g~~~~~~~~v~----~~~~~~~~~i~~l~~~Gv-~~~~~~------~~gg-~~~~r~~~~~~~~~~g~~l~~~L~~~~  265 (572)
T 1d4d_A          199 -GGRNINDPELVK----VLANNSSDSIDWLTSMGA-DMTDVG------RMGG-ASVNRSHRPTGGAGVGAHVAQVLWDNA  265 (572)
T ss_dssp             -HTTTCSCHHHHH----HHHHTHHHHHHHHHHHTC-CCCEEE------CCTT-CSSCCEEESTTTCCHHHHHHHHHHHHH
T ss_pred             -hcCCCCCHHHHH----HHHHccHHHHHHHHhcCC-cccccc------ccCC-CcCCeeEecCCCCCCHHHHHHHHHHHH
Confidence             010000000000    000111223344444455 222110      0000 001122334444455778999999999


Q ss_pred             HHcCcEEEeCceEEEEEEcC-CeE---EEEcCCCc--EEEcCEEEEcCCcCh--HHHHHhc
Q psy7710         215 CELGGEIRLNQQVESFKENP-ESV---TISTKQGD--HLESSYALVCAGLQA--DEMALKS  267 (473)
Q Consensus       215 ~~~Gv~i~~~~~V~~i~~~~-~~v---~v~~~~g~--~i~ad~VV~aaG~~s--~~l~~~~  267 (473)
                      ++.|++|+++++|++|..++ +.+   .+.+.+|.  +++||.||+|+|+++  .++++..
T Consensus       266 ~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~  326 (572)
T 1d4d_A          266 VKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVSKY  326 (572)
T ss_dssp             HHTTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCTTCHHHHHHH
T ss_pred             HHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCccCHHHHHHh
Confidence            99999999999999998766 543   34433563  689999999999986  3455443

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=99.37  E-value=3.8e-11  Score=116.56  Aligned_cols=67  Identities=15%  Similarity=0.222  Sum_probs=56.8

Q ss_pred             cceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCC
Q psy7710         199 GIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGC  269 (473)
Q Consensus       199 ~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~  269 (473)
                      ..++...+...|.+.+.+.|++|+++++|+++.. ++  .|++.+|.+++||.||.|+|.+| .+.+.++.
T Consensus       102 ~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~-~~--~v~~~~g~~~~ad~vV~AdG~~s-~vr~~l~~  168 (379)
T 3alj_A          102 RIMTRSHLHDALVNRARALGVDISVNSEAVAADP-VG--RLTLQTGEVLEADLIVGADGVGS-KVRDSIGF  168 (379)
T ss_dssp             EEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET-TT--EEEETTSCEEECSEEEECCCTTC-HHHHHHCC
T ss_pred             EEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe-CC--EEEECCCCEEEcCEEEECCCccH-HHHHHhcC
Confidence            3567788999999999999999999999999987 33  77777887899999999999998 46666665

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.36  E-value=1.6e-11  Score=124.08  Aligned_cols=70  Identities=13%  Similarity=0.134  Sum_probs=57.5

Q ss_pred             ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCe---EEEEcCCCc--EEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710         200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPES---VTISTKQGD--HLESSYALVCAGLQADEMALKSGCS  270 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~---v~v~~~~g~--~i~ad~VV~aaG~~s~~l~~~~g~~  270 (473)
                      .++...+...|.+.+++.|++|+++++|+++..+++.   +.+.+.+|.  +++||.||.|+|.+| .+.+.+|++
T Consensus       107 ~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S-~vr~~lg~~  181 (512)
T 3e1t_A          107 QVERARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASGNRT-RVSQAVGER  181 (512)
T ss_dssp             BCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEEECCCTTC-SSGGGTCCE
T ss_pred             EecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEEECCCcch-HHHHHcCCC
Confidence            5778889999999999999999999999999988775   445666673  799999999999998 455555643

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=99.35  E-value=2e-11  Score=123.44  Aligned_cols=72  Identities=17%  Similarity=0.183  Sum_probs=59.6

Q ss_pred             ccceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCe--EEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710         198 TGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPES--VTISTKQGDHLESSYALVCAGLQADEMALKSGCS  270 (473)
Q Consensus       198 ~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~--v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~  270 (473)
                      ...+++..+...|.+.+++.|++++++ +|+++..++++  +.|++.+|.+++||.||.|+|.+|..+.+.+|+.
T Consensus       167 ~~~~~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~~~~~~g~~  240 (511)
T 2weu_A          167 AYHFDADEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGLLINQTLGGR  240 (511)
T ss_dssp             EEEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCCCCCCCTCCC
T ss_pred             eEEEcHHHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchHHHHHHhCCC
Confidence            446888999999999999999999999 99999885443  6688888878999999999999986545555654

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.35  E-value=2.8e-11  Score=123.83  Aligned_cols=72  Identities=22%  Similarity=0.252  Sum_probs=56.7

Q ss_pred             ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcC-CeE-EEEcC------CC---------cEEEcCEEEEcCCcChH-
Q psy7710         200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENP-ESV-TISTK------QG---------DHLESSYALVCAGLQAD-  261 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~v-~v~~~------~g---------~~i~ad~VV~aaG~~s~-  261 (473)
                      .++...+.+.|.+.+++.|++|+++++|+++..++ +.+ .|.+.      +|         .+++||.||.|+|.+|. 
T Consensus       140 ~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~v  219 (584)
T 2gmh_A          140 VVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHL  219 (584)
T ss_dssp             ECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHH
T ss_pred             EEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCchH
Confidence            45667899999999999999999999999999875 334 37665      23         57999999999999974 


Q ss_pred             --HHHHhcCCCC
Q psy7710         262 --EMALKSGCSL  271 (473)
Q Consensus       262 --~l~~~~g~~~  271 (473)
                        .+.+.+|+..
T Consensus       220 r~~l~~~~gl~~  231 (584)
T 2gmh_A          220 AKQLYKKFDLRA  231 (584)
T ss_dssp             HHHHHHHTTTTT
T ss_pred             HHHHHHHhCCCC
Confidence              4555567653

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.35  E-value=4.6e-11  Score=119.66  Aligned_cols=57  Identities=16%  Similarity=0.207  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh-HHHH
Q psy7710         205 LVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA-DEMA  264 (473)
Q Consensus       205 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s-~~l~  264 (473)
                      .+.+.|.+.+.+  ++|+++++|++|..++++|.|++.+| +++||.||+|++.+. ..++
T Consensus       237 ~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~~~v~~~~g-~~~ad~vV~a~p~~~~~~ll  294 (475)
T 3lov_A          237 SLIERLEEVLER--SEIRLETPLLAISREDGRYRLKTDHG-PEYADYVLLTIPHPQVVQLL  294 (475)
T ss_dssp             HHHHHHHHHCSS--CEEESSCCCCEEEEETTEEEEECTTC-CEEESEEEECSCHHHHHHHC
T ss_pred             HHHHHHHhhccC--CEEEcCCeeeEEEEeCCEEEEEECCC-eEECCEEEECCCHHHHHHHc
Confidence            455555544433  79999999999999888999999999 899999999999884 4443

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.32  E-value=3.3e-12  Score=128.15  Aligned_cols=56  Identities=13%  Similarity=0.174  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCe-EEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPES-VTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      ..+.+.|.+.+++.|++|+++++|++|..++++ +.|+++++ +++||.||+|++.+.
T Consensus       234 ~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~~~~-~~~ad~vv~a~p~~~  290 (477)
T 3nks_A          234 EMLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLRDS-SLEADHVISAIPASV  290 (477)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEECSSC-EEEESEEEECSCHHH
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEECCe-EEEcCEEEECCCHHH
Confidence            468889999999999999999999999987765 88888665 899999999999873

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.32  E-value=2.8e-11  Score=120.66  Aligned_cols=173  Identities=12%  Similarity=0.051  Sum_probs=98.1

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh-cC
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK-RN  137 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  137 (473)
                      ||+|||||++|+++|+.|+++  |.+|+||||. . .+++|..+.|.+...... .+.. .....       +..+. .+
T Consensus         1 DVvVIG~G~AGl~aA~~la~~--G~~V~viek~-~-~~g~s~~a~Ggi~~~~~~-~d~~-~~~~~-------d~l~~g~~   67 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRA--GKKVTLISKR-I-DGGSTPIAKGGVAASVGS-DDSP-ELHAQ-------DTIRVGDG   67 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT--TCCEEEECSS-T-TCSSGGGCCSCEECCCST-TCCH-HHHHH-------HHHHHHTT
T ss_pred             CEEEECCCHHHHHHHHHHHHC--CCCEEEEeCC-C-CCchHHHHhCCeEEeCCC-CCCH-HHHHH-------HHHHhcCC
Confidence            799999999999999999999  8999999998 3 445555555555433221 1111 11111       11000 00


Q ss_pred             CCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHHHc
Q psy7710         138 IPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCEL  217 (473)
Q Consensus       138 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  217 (473)
                      . .++ ..+.    .-.+.....++++..+|+ .+..   .  ...++.......++.   +...+..+...|.+.+++.
T Consensus        68 ~-~d~-~~v~----~~~~~~~~~i~~l~~~Gv-~~~~---~--~~~~~g~~~~r~~~~---~d~~g~~l~~~L~~~~~~~  132 (472)
T 2e5v_A           68 L-CDV-KTVN----YVTSEAKNVIETFESWGF-EFEE---D--LRLEGGHTKRRVLHR---TDETGREIFNFLLKLAREE  132 (472)
T ss_dssp             C-SCH-HHHH----HHHHHHHHHHHHHHHTTC-CCCS---S--CBCCTTCSSCCEECS---SSCHHHHHHHHHHHHHHHT
T ss_pred             c-CCH-HHHH----HHHHHHHHHHHHHHHcCC-CCCc---c--cccccCcCcCcEEEe---CCCCHHHHHHHHHHHHHhC
Confidence            0 000 0000    000112233455555665 2221   0  000111110111111   2234677889999999888


Q ss_pred             CcEEEeCceEEEEEEcCCeE---EEEcCCCcEEEcCEEEEcCCcChH
Q psy7710         218 GGEIRLNQQVESFKENPESV---TISTKQGDHLESSYALVCAGLQAD  261 (473)
Q Consensus       218 Gv~i~~~~~V~~i~~~~~~v---~v~~~~g~~i~ad~VV~aaG~~s~  261 (473)
                      |++++++++| ++..+++.+   .+.+.+| ++.||.||+|+|+++.
T Consensus       133 gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g-~~~a~~VVlAtGg~~~  177 (472)
T 2e5v_A          133 GIPIIEDRLV-EIRVKDGKVTGFVTEKRGL-VEDVDKLVLATGGYSY  177 (472)
T ss_dssp             TCCEECCCEE-EEEEETTEEEEEEETTTEE-ECCCSEEEECCCCCGG
T ss_pred             CCEEEECcEE-EEEEeCCEEEEEEEEeCCC-eEEeeeEEECCCCCcc
Confidence            9999999999 998776654   2333445 6789999999999974

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.32  E-value=3.1e-11  Score=104.10  Aligned_cols=66  Identities=15%  Similarity=0.221  Sum_probs=56.6

Q ss_pred             eHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710         202 DWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS  270 (473)
Q Consensus       202 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~  270 (473)
                      .+..+.+.+.+.+++.|++++++ +|+++..+++.+.|++++| ++++|.||+|+|..+ .+++.+|++
T Consensus        54 ~~~~~~~~l~~~~~~~gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~-~~~~~~g~~  119 (180)
T 2ywl_A           54 SGEELLRRLEAHARRYGAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDP-TLPSLLGLT  119 (180)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCC-HHHHHHTCC
T ss_pred             CHHHHHHHHHHHHHHcCCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCC-CccccCCCC
Confidence            34567778888999999999999 9999998877788999888 899999999999997 567777764

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=99.31  E-value=5.8e-11  Score=121.64  Aligned_cols=186  Identities=9%  Similarity=-0.028  Sum_probs=100.8

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCC--CeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPK--MKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYF  133 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G--~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (473)
                      .++||+|||||++|+++|+.|+++  |  .+|+||||....++.++...+|+... .. ..+.+.. .       +.+..
T Consensus         4 ~~~DVvIVG~G~AGl~aAl~la~~--G~~~~V~vlEk~~~~~~~s~~a~GGi~~~-~~-~~ds~~~-~-------~~d~~   71 (602)
T 1kf6_A            4 FQADLAIVGAGGAGLRAAIAAAQA--NPNAKIALISKVYPMRSHTVAAEGGSAAV-AQ-DHDSFEY-H-------FHDTV   71 (602)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHH--CTTCCEEEEESSCGGGSGGGGCCSCEECC-CS-TTCCHHH-H-------HHHHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhc--CCCCcEEEEeCCCCCCChHHHhcCccEEe-CC-CCCCHHH-H-------HHHHH
Confidence            358999999999999999999999  7  99999999854444444444444322 11 1111110 0       01111


Q ss_pred             HhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHH-hhcCCcccceeEecCCccceeHHHHHHHHHH
Q psy7710         134 DKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIK-TIEPYCKGVKAIHSPNTGIVDWGLVTRVMGE  212 (473)
Q Consensus       134 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~  212 (473)
                      .......+. ..+.    .-.+.....+.++..+|+ .+.......+. ..++........+. .  ......+...|.+
T Consensus        72 ~~g~~~~d~-~~v~----~~~~~~~~~i~~L~~~Gv-~f~~~~~g~~~~~~~gg~~~~r~~~~-~--d~tg~~l~~~L~~  142 (602)
T 1kf6_A           72 AGGDWLCEQ-DVVD----YFVHHCPTEMTQLELWGC-PWSRRPDGSVNVRRFGGMKIERTWFA-A--DKTGFHMLHTLFQ  142 (602)
T ss_dssp             HHTTTCSCH-HHHH----HHHHHHHHHHHHHHHTTC-CCCBCTTSSBCCBCCTTCSSCCEECS-T--TCHHHHHHHHHHH
T ss_pred             HhcCCCCCH-HHHH----HHHHHHHHHHHHHHHcCC-CcccCCCCcccccccCCccCCeEEEc-C--CCCHHHHHHHHHH
Confidence            100000000 0000    000111233444555665 22211110000 00000000011111 1  1124678889999


Q ss_pred             HHHHcC-cEEEeCceEEEEEEcCCeE---EEE-cCCCc--EEEcCEEEEcCCcChHH
Q psy7710         213 EFCELG-GEIRLNQQVESFKENPESV---TIS-TKQGD--HLESSYALVCAGLQADE  262 (473)
Q Consensus       213 ~~~~~G-v~i~~~~~V~~i~~~~~~v---~v~-~~~g~--~i~ad~VV~aaG~~s~~  262 (473)
                      .+++.| ++|++++.|++|..+++.+   .+. +.+|.  .++|+.||+|+|+++..
T Consensus       143 ~~~~~gnv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~~  199 (602)
T 1kf6_A          143 TSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRV  199 (602)
T ss_dssp             HHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGG
T ss_pred             HHHhCCCcEEEeCCEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCCccc
Confidence            998888 9999999999999877643   233 35674  68999999999999753

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.30  E-value=8e-12  Score=119.56  Aligned_cols=155  Identities=18%  Similarity=0.233  Sum_probs=88.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHh---cCCCCeEEEEeccCcccCcccCCCc----c-eEEeeccCCCchhHHHHHHHhHHHH
Q psy7710          58 YDVVVVGGGIVGVATARELKL---NYPKMKICLVEKEKELGMHQTGHNS----G-VVHAGIYYKPGTLKAKLCVEGMNLA  129 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~---~~~G~~V~viE~~~~~g~~~s~~~~----g-~~~~~~~~~~~~~~~~~~~~~~~~~  129 (473)
                      +||+|||||++|+++|+.|++   .  |.+|+|+||.+.+|+..+....    + .+..+..+                 
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~--G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~-----------------   62 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSG--PLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQY-----------------   62 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-C--CEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCC-----------------
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccC--CceEEEEECCCCCccceeeeecCCCCCceEecCCce-----------------
Confidence            589999999999999999999   7  9999999999777665433211    0 11111000                 


Q ss_pred             HHHHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHH
Q psy7710         130 YEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRV  209 (473)
Q Consensus       130 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  209 (473)
                                       ..........+...++.+...+. ...+.....  ...  .......|....+.   ..+.+.
T Consensus        63 -----------------~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~--~~~--~~~~~~~~~~~~g~---~~l~~~  117 (342)
T 3qj4_A           63 -----------------ITCTPHYAKKHQRFYDELLAYGV-LRPLSSPIE--GMV--MKEGDCNFVAPQGI---SSIIKH  117 (342)
T ss_dssp             -----------------EEECSSHHHHTHHHHHHHHHTTS-CEECCSCEE--TCC--C--CCEEEECTTCT---THHHHH
T ss_pred             -----------------EEcCchHHHHHHHHHHHHHhCCC-eecCchhhc--cee--ccCCccceecCCCH---HHHHHH
Confidence                             00000011122223333333332 111100000  000  00000112222221   334455


Q ss_pred             HHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcC
Q psy7710         210 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ  259 (473)
Q Consensus       210 l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~  259 (473)
                      +.+.   .|++|+++++|++|..++++|.|++.+|..+++|.||+|+...
T Consensus       118 l~~~---~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV~A~p~~  164 (342)
T 3qj4_A          118 YLKE---SGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIVLTMPVP  164 (342)
T ss_dssp             HHHH---HTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEEECSCHH
T ss_pred             HHHh---cCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHH
Confidence            5444   3899999999999999888899999888678999999999853

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=99.30  E-value=1.4e-11  Score=124.86  Aligned_cols=204  Identities=14%  Similarity=0.102  Sum_probs=113.1

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC-c-----------------------------------------
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK-E-----------------------------------------   93 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~-~-----------------------------------------   93 (473)
                      ..||+||||||.+|+++|.+|++. ++.+|+|||+++ .                                         
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~-~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~~~w~~~t~~q~~~~r~~~~~r   96 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTEN-PNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVELATNNQTALIRS   96 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTS-TTCCEEEECSSCCCTTSCHHHHBGGGTTTTTTSTTBCCEECCCCTTTSCCCEECC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhC-CCCcEEEEecCCCCCCCCcceechhhHHhhcCCcccCCccccccCCCCCeeeccC
Confidence            579999999999999999999975 378999999986 1                                         


Q ss_pred             --ccCcccCCCcceEEeeccCCCchhHH-----HHHHHhHHHHHHHHHhcC----------C----C-CcccCeEEEEeC
Q psy7710          94 --LGMHQTGHNSGVVHAGIYYKPGTLKA-----KLCVEGMNLAYEYFDKRN----------I----P-YKKCGKLIVALN  151 (473)
Q Consensus        94 --~g~~~s~~~~g~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~----------~----~-~~~~g~l~~~~~  151 (473)
                        .-||+|..|+.+...+...+.+.+..     .|.+.....+.+-.+.+.          .    . ....|.+.+...
T Consensus        97 Gk~LGGsS~iN~m~y~Rg~~~Dyd~W~~~g~~~gW~~~~~lpyf~k~E~~~~~~~~~~~~~~~~~~~~hG~~Gpl~v~~~  176 (583)
T 3qvp_A           97 GNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPR  176 (583)
T ss_dssp             BCSTTGGGGTSCCBCCCCCHHHHHHHHHTSCCTTCSHHHHHHHHHHHEEECCCCHHHHHHTCCCCGGGSCSSSSEEEBCC
T ss_pred             ceecCCcCcccceEEEeCCHHHHHHHHHhCCCCCCChhHHHHHHHHHHhccCCcchhhcccccCCccccCCCCCEEecCC
Confidence              12455556655544332111111100     122222222222222221          0    1 123466666543


Q ss_pred             ---c-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCC----ccceeHHHHHHHHHHHHHHcCcEEEe
Q psy7710         152 ---E-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPN----TGIVDWGLVTRVMGEEFCELGGEIRL  223 (473)
Q Consensus       152 ---~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~Gv~i~~  223 (473)
                         . .......+.+.+.+.|++...-+..         ....+..+.+.    .+. ........|...+.+.|++|++
T Consensus       177 ~~~~~~~~~~~~~~~a~~~~G~~~~~D~n~---------~~~~G~~~~~~t~~~~g~-R~saa~ayL~p~~~r~NL~V~t  246 (583)
T 3qvp_A          177 DTGDDYSPIVKALMSAVEDRGVPTKKDFGC---------GDPHGVSMFPNTLHEDQV-RSDAAREWLLPNYQRPNLQVLT  246 (583)
T ss_dssp             CCSSCBCTHHHHHHHHHHTTTCCBCCCTTS---------SCCCEEECCCBSBCTTCB-BCCHHHHHTTTTTTCTTEEEEC
T ss_pred             CCcccCCHHHHHHHHHHHHcCCCcCCCCCC---------CCCceecccceeEcCCCc-EecHHHHHHHHhhcCCCcEEEc
Confidence               1 2334456666677777631110000         00112222211    111 0111222333344567999999


Q ss_pred             CceEEEEEEc----CCeE-EEEc--CCC--cEEEcC-EEEEcCCcC-hHHHHHhcCCC
Q psy7710         224 NQQVESFKEN----PESV-TIST--KQG--DHLESS-YALVCAGLQ-ADEMALKSGCS  270 (473)
Q Consensus       224 ~~~V~~i~~~----~~~v-~v~~--~~g--~~i~ad-~VV~aaG~~-s~~l~~~~g~~  270 (473)
                      ++.|++|..+    ++++ .|+.  .+|  .+++|+ .||+|+|++ |++|+..+||.
T Consensus       247 ~a~V~rIl~d~~~~~~ra~GV~~~~~~G~~~~v~A~kEVILsAGa~~SPqLL~lSGIG  304 (583)
T 3qvp_A          247 GQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIG  304 (583)
T ss_dssp             SCEEEEEEEECSSSSCEEEEEEEESSTTCEEEEEEEEEEEECSCTTTHHHHHHHTTBS
T ss_pred             CCEEEEEEeccCCCCCEEEEEEEEecCCcEEEEEECCEEEEeCCccCCHHHHHHcCCC
Confidence            9999999987    4433 3443  455  357786 699999998 89999888875

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.30  E-value=1.7e-11  Score=124.59  Aligned_cols=78  Identities=15%  Similarity=0.244  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHcC--cEEEeCceEEEEEEcC--CeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeee
Q psy7710         204 GLVTRVMGEEFCELG--GEIRLNQQVESFKENP--ESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFR  279 (473)
Q Consensus       204 ~~~~~~l~~~~~~~G--v~i~~~~~V~~i~~~~--~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~  279 (473)
                      ..+.+.+...+++.+  ..++++++|+++..++  +.|.|++.+|.+++||.||+|+|.++.....  .+   +.+.+.+
T Consensus        94 ~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p--~i---~G~~~f~  168 (542)
T 1w4x_A           94 PEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLP--NF---PGLKDFA  168 (542)
T ss_dssp             HHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCCCC--CC---TTGGGCC
T ss_pred             HHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCCCC--CC---CCcccCC
Confidence            445555666666655  6799999999998764  4788999888889999999999998632211  01   1234456


Q ss_pred             eEEEEeC
Q psy7710         280 GEYLLLN  286 (473)
Q Consensus       280 g~~~~~~  286 (473)
                      |+.+...
T Consensus       169 G~~~hs~  175 (542)
T 1w4x_A          169 GNLYHTG  175 (542)
T ss_dssp             SEEEEGG
T ss_pred             CceEECC
Confidence            7666553

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.29  E-value=1.9e-11  Score=117.44  Aligned_cols=59  Identities=7%  Similarity=0.002  Sum_probs=52.4

Q ss_pred             eHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEE-EEcCCCcEEEcCEEEEcCCcChH
Q psy7710         202 DWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQAD  261 (473)
Q Consensus       202 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~~~~g~~i~ad~VV~aaG~~s~  261 (473)
                      ....+...+.+.+++.|++++++++|+++..+++.+. |++.++ ++++|.||+|+|.++.
T Consensus        74 ~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~  133 (357)
T 4a9w_A           74 ARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWGE  133 (357)
T ss_dssp             BHHHHHHHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGGG
T ss_pred             CHHHHHHHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCCC
Confidence            3456778888888899999999999999999999999 999998 9999999999998863

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.29  E-value=7.9e-11  Score=115.06  Aligned_cols=65  Identities=11%  Similarity=0.137  Sum_probs=52.7

Q ss_pred             eeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcC
Q psy7710         201 VDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSG  268 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g  268 (473)
                      .+...+.+.|.+.+  .|++|+++++|+++..+++++.|++.+|.+++||.||.|+|.+| .+.+.++
T Consensus        96 ~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S-~vr~~~~  160 (397)
T 2vou_A           96 TSYDSIYGGLYELF--GPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGAS-VVRKRLL  160 (397)
T ss_dssp             EEHHHHHHHHHHHH--CSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTC-HHHHHHH
T ss_pred             cCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcch-hHHHHhc
Confidence            34455666666654  58999999999999998888999998888899999999999998 3555555

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=99.29  E-value=2.4e-10  Score=112.25  Aligned_cols=66  Identities=14%  Similarity=0.259  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeE-EEEcCCCcEEEcCEEEEcCCcCh-HHHHHhcCCCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQA-DEMALKSGCSL  271 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v-~v~~~~g~~i~ad~VV~aaG~~s-~~l~~~~g~~~  271 (473)
                      +.+.+.+.++++|++++++++|+++..+++++ .|++.+|+++.||.||+|+|... ..+++.+|+..
T Consensus       196 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~  263 (415)
T 3lxd_A          196 LSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALISAGASG  263 (415)
T ss_dssp             HHHHHHHHHHHTTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEESCHHHHHTTCCC
T ss_pred             HHHHHHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccChHHHHhCCCCc
Confidence            45567778888999999999999999877665 68888888999999999999984 46888888765

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.27  E-value=5.3e-11  Score=119.87  Aligned_cols=57  Identities=14%  Similarity=0.176  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHcC-cEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         204 GLVTRVMGEEFCELG-GEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       204 ~~~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      ..+.+.|.+.+.+.| ++|+++++|++|..+++++.|++.+|.+++||+||+|+|...
T Consensus       255 ~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~~  312 (495)
T 2vvm_A          255 SAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLNV  312 (495)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGGG
T ss_pred             HHHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHHH
Confidence            568888999998888 999999999999988888999998887899999999999863

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.27  E-value=4.4e-11  Score=118.21  Aligned_cols=45  Identities=38%  Similarity=0.605  Sum_probs=39.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSG  104 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g  104 (473)
                      +||+|||||++|+++|++|+++  |.+|+|||+++.+|+.+...+.+
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~--G~~V~vlE~~~~~GG~~~t~~~~   46 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNA--GKKVLLLEGGERLGGRAYSRESR   46 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHT--TCCEEEECSSSSSBTTCCEEECS
T ss_pred             CCEEEECCcHHHHHHHHHHHHc--CCeEEEEecCCCccCeecceecc
Confidence            7999999999999999999999  99999999987888877654433

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=99.27  E-value=6e-11  Score=120.10  Aligned_cols=184  Identities=11%  Similarity=0.009  Sum_probs=85.4

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK  135 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (473)
                      .++||+|||||++|+++|+.|++   |.+|+||||.+ ..+++|..+.|.+..... ..++. .       ..+.+....
T Consensus         7 ~~~DVvVVG~G~AGl~aAl~la~---G~~V~vlEk~~-~~~g~s~~a~Ggi~~~~~-~~ds~-~-------~~~~d~l~~   73 (540)
T 1chu_A            7 HSCDVLIIGSGAAGLSLALRLAD---QHQVIVLSKGP-VTEGSTFYAQGGIAAVFD-ETDSI-D-------SHVEDTLIA   73 (540)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTT---TSCEEEECSSC-TTC-------------CC-SHHHH-H-------HHHHHHHHH
T ss_pred             CCCCEEEECccHHHHHHHHHHhc---CCcEEEEECCC-CCCCChhhcCCCEEEecC-CCCCH-H-------HHHHHHHHh
Confidence            46899999999999999999997   58999999984 555666666655543221 11111 0       011111111


Q ss_pred             cCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeC----HHHH-HhhcCCcccceeEecCCccceeHHHHHHHH
Q psy7710         136 RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVS----AEEI-KTIEPYCKGVKAIHSPNTGIVDWGLVTRVM  210 (473)
Q Consensus       136 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~----~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l  210 (473)
                      .....+. ..+.    .-.+...+.++++.+.|+ .+....    ...+ ...++... ...++..  +...+..+...|
T Consensus        74 g~g~~d~-~~v~----~~~~~~~~~i~~l~~~Gv-~f~~~~~~~~~g~~~~~~~gg~~-~~r~~~~--~d~~g~~l~~~L  144 (540)
T 1chu_A           74 GAGICDR-HAVE----FVASNARSCVQWLIDQGV-LFDTHIQPNGEESYHLTREGGHS-HRRILHA--ADATGREVETTL  144 (540)
T ss_dssp             TTTCCCH-HHHH----HHHHHHHHHHHHHHHTTC-C-----------------------------------------CCC
T ss_pred             hcccCCH-HHHH----HHHHhHHHHHHHHHHcCC-CcccCcccCcCCccccccccccc-cCeEEEe--CCCCHHHHHHHH
Confidence            1000000 0000    000112334455556665 332221    0000 00000000 0000110  012345677788


Q ss_pred             HHHHHH-cCcEEEeCceEEEEEE-cCC------eE-EEEc---CCCc--EEEcCEEEEcCCcChH
Q psy7710         211 GEEFCE-LGGEIRLNQQVESFKE-NPE------SV-TIST---KQGD--HLESSYALVCAGLQAD  261 (473)
Q Consensus       211 ~~~~~~-~Gv~i~~~~~V~~i~~-~~~------~v-~v~~---~~g~--~i~ad~VV~aaG~~s~  261 (473)
                      .+.+++ .|++|++++.|++|.. +++      .+ .|.+   .+|+  .++||.||+|+|+++.
T Consensus       145 ~~~~~~~~gv~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~~  209 (540)
T 1chu_A          145 VSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASK  209 (540)
T ss_dssp             HHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGG
T ss_pred             HHHHHcCCCCEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccc
Confidence            888888 7999999999999998 434      33 2333   3563  6899999999999874

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=99.25  E-value=1.2e-11  Score=122.83  Aligned_cols=58  Identities=10%  Similarity=0.148  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEc--CCeE-EEEcCCCcEEEcCEEEEcCCcChHH
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKEN--PESV-TISTKQGDHLESSYALVCAGLQADE  262 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~--~~~v-~v~~~~g~~i~ad~VV~aaG~~s~~  262 (473)
                      ..+.+.|.+.+++.|++|+++++|++|..+  ++++ .|+++ |.+++||.||+|+|.|+..
T Consensus       242 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~~-g~~~~ad~VV~a~~~~~~~  302 (453)
T 2bcg_G          242 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTK-LGTFKAPLVIADPTYFPEK  302 (453)
T ss_dssp             THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEET-TEEEECSCEEECGGGCGGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEEC-CeEEECCEEEECCCccchh
Confidence            578999999999999999999999999987  6664 57775 6689999999999999753

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.25  E-value=7.4e-11  Score=118.30  Aligned_cols=69  Identities=9%  Similarity=0.157  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChH-HH--HHhcCCCC
Q psy7710         203 WGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD-EM--ALKSGCSL  271 (473)
Q Consensus       203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~-~l--~~~~g~~~  271 (473)
                      ...+...+.+.+++.|++++++++|+++..+++++.|++.+|.++.+|.||+|+|.... .+  ++.+|++.
T Consensus       231 ~~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~  302 (484)
T 3o0h_A          231 DYDLRQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKV  302 (484)
T ss_dssp             CHHHHHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCTTCCHHHHTCCB
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcCCCCCChhhcCceE
Confidence            35678888999999999999999999999888788888888888999999999998742 32  56667654

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=99.24  E-value=6.4e-11  Score=115.58  Aligned_cols=68  Identities=16%  Similarity=0.179  Sum_probs=54.1

Q ss_pred             eHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcC-CeEEEEc-CCCc--EEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710         202 DWGLVTRVMGEEFCELGGEIRLNQQVESFKENP-ESVTIST-KQGD--HLESSYALVCAGLQADEMALKSGCS  270 (473)
Q Consensus       202 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~v~v~~-~~g~--~i~ad~VV~aaG~~s~~l~~~~g~~  270 (473)
                      +...+.+.|.+.+.+.|++|+++++|+++..++ +.+.|++ .+|.  +++||.||.|+|.+|. +.+.++.+
T Consensus       101 ~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~~S~-vr~~l~~~  172 (394)
T 1k0i_A          101 GQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGI-SRQSIPAE  172 (394)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTTCS-TGGGSCGG
T ss_pred             chHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECCCCCcH-HHHhcCcc
Confidence            445677888888888899999999999998763 4566665 5775  6999999999999985 66666643

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=99.24  E-value=7.1e-11  Score=110.76  Aligned_cols=42  Identities=33%  Similarity=0.457  Sum_probs=36.2

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMH   97 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~   97 (473)
                      .++||+|||||++|+++|++|+++.+|.+|+|||+.+.++++
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg  119 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGG  119 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTT
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCc
Confidence            358999999999999999999986448999999998666544

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=99.24  E-value=9.4e-11  Score=114.57  Aligned_cols=65  Identities=3%  Similarity=0.066  Sum_probs=51.7

Q ss_pred             eeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcC
Q psy7710         201 VDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSG  268 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g  268 (473)
                      ++...+.+.|.+.+.  +++|+++++|+++..+++++.|++.+|.+++||.||.|+|.+|. +.+.++
T Consensus       125 i~r~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~-vR~~l~  189 (398)
T 2xdo_A          125 INRNDLRAILLNSLE--NDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGMSK-VRKFVT  189 (398)
T ss_dssp             ECHHHHHHHHHHTSC--TTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCTTCS-CCTTTC
T ss_pred             ECHHHHHHHHHhhcC--CCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCcchh-HHhhcc
Confidence            455667777777654  36899999999999988888899888878999999999999973 334443

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.23  E-value=7e-11  Score=112.60  Aligned_cols=118  Identities=17%  Similarity=0.227  Sum_probs=86.9

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK  135 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (473)
                      .++||+|||||++|+++|+.|+++  |.+|+|||+.+.+|+.....                                  
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~~gg~~~~~----------------------------------   47 (335)
T 2zbw_A            4 DHTDVLIVGAGPTGLFAGFYVGMR--GLSFRFVDPLPEPGGQLTAL----------------------------------   47 (335)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSSCHHHHHT----------------------------------
T ss_pred             CcCcEEEECCCHHHHHHHHHHHhC--CCCEEEEeCCCCCCCeeecc----------------------------------
Confidence            468999999999999999999999  89999999985443111000                                  


Q ss_pred             cCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHH
Q psy7710         136 RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC  215 (473)
Q Consensus       136 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  215 (473)
                                                       .+...+.+                  .+.-..+.+..+...+.+.++
T Consensus        48 ---------------------------------~~~~~~~~------------------~~~~~~~~~~~~~~~l~~~~~   76 (335)
T 2zbw_A           48 ---------------------------------YPEKYIYD------------------VAGFPKVYAKDLVKGLVEQVA   76 (335)
T ss_dssp             ---------------------------------CTTSEECC------------------STTCSSEEHHHHHHHHHHHHG
T ss_pred             ---------------------------------CCCceeec------------------cCCCCCCCHHHHHHHHHHHHH
Confidence                                             00000000                  000012345667777888888


Q ss_pred             HcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         216 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       216 ~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      +.+++++++++|+++..+++.+.|.+.+|.++++|.||+|+|..+
T Consensus        77 ~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~  121 (335)
T 2zbw_A           77 PFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGA  121 (335)
T ss_dssp             GGCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSE
T ss_pred             HcCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCC
Confidence            889999999999999987778888888887899999999999863

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=99.23  E-value=1.2e-10  Score=117.73  Aligned_cols=69  Identities=22%  Similarity=0.266  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCe----EEEEcCCCc-EEEcCEEEEcCCcChH-H-HHHhcCCCC
Q psy7710         203 WGLVTRVMGEEFCELGGEIRLNQQVESFKENPES----VTISTKQGD-HLESSYALVCAGLQAD-E-MALKSGCSL  271 (473)
Q Consensus       203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~----v~v~~~~g~-~i~ad~VV~aaG~~s~-~-l~~~~g~~~  271 (473)
                      +..+...+.+.+++.|++++++++|+++..++++    +.|++.+|. +++||.||+|+|.+.+ . +++.+|++.
T Consensus       254 ~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~~gl~~  329 (523)
T 1mo9_A          254 DNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDL  329 (523)
T ss_dssp             SHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCHHHHHHHTCCB
T ss_pred             cHHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCccCHHHcCCcc
Confidence            4667888999999999999999999999976544    678888886 7999999999999843 4 678888764

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.22  E-value=1.5e-11  Score=124.65  Aligned_cols=60  Identities=17%  Similarity=0.138  Sum_probs=50.4

Q ss_pred             ceeHHHHHHHHHHHHHH-cCcEEEeCceEEEEEEcCCeE-EEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         200 IVDWGLVTRVMGEEFCE-LGGEIRLNQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~v-~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      .++...+...+.+.+++ .|++| ++++|++|..+++.+ .|.+.+|.+++||.||+|+|.++
T Consensus       120 ~~Dr~~~~~~L~e~Le~~~GV~I-~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s  181 (651)
T 3ces_A          120 QADRVLYRQAVRTALENQPNLMI-FQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFL  181 (651)
T ss_dssp             EECHHHHHHHHHHHHHTCTTEEE-EECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTT
T ss_pred             hCCHHHHHHHHHHHHHhCCCCEE-EEEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCc
Confidence            46677888899999988 69999 578999998877655 68888887899999999999874

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.22  E-value=1.5e-10  Score=104.05  Aligned_cols=59  Identities=8%  Similarity=-0.056  Sum_probs=49.1

Q ss_pred             eHHHHHHHHHHHHHHc-CcEEEeCceEEEEEEcCCeE-EEEcCCCcEEEcCEEEEcCCcChH
Q psy7710         202 DWGLVTRVMGEEFCEL-GGEIRLNQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQAD  261 (473)
Q Consensus       202 ~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~v-~v~~~~g~~i~ad~VV~aaG~~s~  261 (473)
                      ++..+...+.+.+++. |++++ +++|+++..+++.+ .|.+.+|.+++||.||+|+|.++.
T Consensus        66 ~~~~~~~~l~~~~~~~~gv~i~-~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~  126 (232)
T 2cul_A           66 RVWAFHARAKYLLEGLRPLHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLG  126 (232)
T ss_dssp             CHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSS
T ss_pred             CHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence            4456778888889887 99998 67999998877664 588888878999999999999864

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=99.21  E-value=1.7e-11  Score=120.58  Aligned_cols=56  Identities=16%  Similarity=0.188  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEE-cCCe-EEEEcCCCcEEEcCEEEEcCCcC
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKE-NPES-VTISTKQGDHLESSYALVCAGLQ  259 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~-~~~~-v~v~~~~g~~i~ad~VV~aaG~~  259 (473)
                      ..+.+.|.+.+++.|++|+++++|++|.. ++++ +.|++.+|++++||.||++++.+
T Consensus       256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~  313 (475)
T 3p1w_A          256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV  313 (475)
T ss_dssp             THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence            67899999999999999999999999998 5554 56899888789999999999988

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=99.21  E-value=6e-11  Score=111.46  Aligned_cols=38  Identities=21%  Similarity=0.326  Sum_probs=33.8

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGM   96 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~   96 (473)
                      ++|||+|||||++|++||++|+++  |++|+|||++ .+++
T Consensus         5 ~~yDVvIIGaGpAGlsAA~~lar~--g~~v~lie~~-~~gg   42 (304)
T 4fk1_A            5 KYIDCAVIGAGPAGLNASLVLGRA--RKQIALFDNN-TNRN   42 (304)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHT--TCCEEEEECS-CCGG
T ss_pred             CCcCEEEECCCHHHHHHHHHHHHC--CCCEEEEeCC-CCCC
Confidence            679999999999999999999999  9999999997 4443

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=99.21  E-value=2.8e-11  Score=122.52  Aligned_cols=61  Identities=15%  Similarity=0.163  Sum_probs=44.9

Q ss_pred             HHHHHHHcCcEEEeCceEEEEEEc----C-C---eEEEEcCCC---cEEEc-CEEEEcCCcC-hHHHHHhcCCC
Q psy7710         210 MGEEFCELGGEIRLNQQVESFKEN----P-E---SVTISTKQG---DHLES-SYALVCAGLQ-ADEMALKSGCS  270 (473)
Q Consensus       210 l~~~~~~~Gv~i~~~~~V~~i~~~----~-~---~v~v~~~~g---~~i~a-d~VV~aaG~~-s~~l~~~~g~~  270 (473)
                      |...+.+.+++|++++.|++|..+    + +   +|.+...+|   .+++| +.||+|+|+. |++|+..+||.
T Consensus       214 L~p~~~r~NL~Vlt~a~V~rIl~~~~~~g~~rA~GVe~~~~~g~~~~~v~A~kEVILsAGai~SPqlL~lSGIG  287 (566)
T 3fim_B          214 LRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIG  287 (566)
T ss_dssp             HHHHTTCTTEEEESSCEEEEEECCEEETTEEECCEEEEESSTTSCCEEEEEEEEEEECCHHHHHHHHHHHTTEE
T ss_pred             hhhhccCCCeEEECCCEEEEEEeecCCCCCCEEEEEEEEECCCceEEEEEeeeEEEEecCCcCChHHHHhcCCC
Confidence            434445679999999999999876    3 2   344444433   36788 6799999998 89998887764

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=99.21  E-value=3.7e-11  Score=122.19  Aligned_cols=75  Identities=19%  Similarity=0.180  Sum_probs=61.1

Q ss_pred             cCCccceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCC--eEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710         195 SPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPE--SVTISTKQGDHLESSYALVCAGLQADEMALKSGCS  270 (473)
Q Consensus       195 ~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~--~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~  270 (473)
                      .+....+++..+...|.+.+++.|++++++ +|+++..+++  .+.|++.+|.+++||.||.|+|.+|..+.+.+|+.
T Consensus       156 ~~~~~~i~~~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~~~~~~lg~~  232 (538)
T 2aqj_A          156 MSHAWHFDAHLVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGLLINQALKEP  232 (538)
T ss_dssp             SCCEEEECHHHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCCCCCCCTCCC
T ss_pred             CCccEEEeHHHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchhhHHHHhCCC
Confidence            455667899999999999999999999999 8999988644  35688888878999999999999986545555543

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=99.20  E-value=2e-10  Score=118.36  Aligned_cols=183  Identities=12%  Similarity=0.065  Sum_probs=98.7

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhc----CCCCeEEEEeccCcccCcccCCCcc--eEEeeccCCCchhHHHHHHHhHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLN----YPKMKICLVEKEKELGMHQTGHNSG--VVHAGIYYKPGTLKAKLCVEGMNLA  129 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~----~~G~~V~viE~~~~~g~~~s~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~  129 (473)
                      .++||+|||||++|+++|++|+++    +||.+|+||||. .++.+++ .+.|  .+.....  ......        .+
T Consensus        21 ~~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~-~~~~s~s-~AqG~~gi~a~l~--~ds~e~--------~~   88 (662)
T 3gyx_A           21 HSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKA-SLERSGA-VAQGLSAINTYLG--DNNADD--------YV   88 (662)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSS-CTTTCST-TTTCEEEECCCCT--TSCHHH--------HH
T ss_pred             EEcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEec-CCCCCcc-cccCcchheeecC--CCCHHH--------HH
Confidence            468999999999999999999986    247899999998 4544433 4455  3322211  111100        00


Q ss_pred             HHHHHhcCCCCcccCeEEEEeCcC----hhhHHHHHHHHHhCCCCcceee-------CHHHHHhhcCCcccceeEecCC-
Q psy7710         130 YEYFDKRNIPYKKCGKLIVALNEQ----LEPLHDLYERSIQNNVKDVRLV-------SAEEIKTIEPYCKGVKAIHSPN-  197 (473)
Q Consensus       130 ~~~~~~~~~~~~~~g~l~~~~~~~----~~~~~~~~~~~~~~g~~~~~~l-------~~~~~~~~~p~~~~~~~~~~~~-  197 (473)
                      ....... ...        ...+.    .+.....+.++..+|+ .+...       ...... .++.....++...+. 
T Consensus        89 ~~~~~~~-~gl--------~d~~~v~~l~~~a~~~i~~L~~~Gv-~f~~~~~~G~~~~g~~~~-~fg~~~~~gg~~~~r~  157 (662)
T 3gyx_A           89 RMVRTDL-MGL--------VREDLIYDLGRHVDDSVHLFEEWGL-PVWIKDEHGHNLDGAQAK-AAGKSLRNGDKPVRSG  157 (662)
T ss_dssp             HHHHHHT-TTC--------CCHHHHHHHHHHHHHHHHHHHHHTC-CBCEECSSSCEECHHHHH-HHTCCTTTTCCBCCSS
T ss_pred             HHHHHhc-CCC--------ccHHHHHHHHHHHHHHHHHHHHcCC-CceecCCCCccccchhhh-ccccccccCccccccc
Confidence            0000000 000        00000    1112233344445555 23222       011111 111111111111111 


Q ss_pred             --ccceeHHHHHHHHHHHHHHc--CcEEEeCceEEEEEEcCC---eEE-EE---cCCC--cEEEcCEEEEcCCcChH
Q psy7710         198 --TGIVDWGLVTRVMGEEFCEL--GGEIRLNQQVESFKENPE---SVT-IS---TKQG--DHLESSYALVCAGLQAD  261 (473)
Q Consensus       198 --~~~~~~~~~~~~l~~~~~~~--Gv~i~~~~~V~~i~~~~~---~v~-v~---~~~g--~~i~ad~VV~aaG~~s~  261 (473)
                        ...+.+..+...|.+.+++.  |++|+.++.|.+|..+++   .+. |.   ..+|  ..+.|+.||+|||+++.
T Consensus       158 ~~~~~~~G~~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~g~  234 (662)
T 3gyx_A          158 RWQIMINGESYKVIVAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGGAVN  234 (662)
T ss_dssp             TTCEEEEETSHHHHHHHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCS
T ss_pred             eecccCCHHHHHHHHHHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCcccc
Confidence              11234566888888888887  999999999999988765   442 32   2344  35899999999999874

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=99.20  E-value=2.3e-10  Score=118.38  Aligned_cols=71  Identities=20%  Similarity=0.306  Sum_probs=57.3

Q ss_pred             ceeHHHHHHHHHHHHHHcCc--EEEeCceEEEEEEcCC----eEEEEcC------CC--cEEEcCEEEEcCCcChHHHHH
Q psy7710         200 IVDWGLVTRVMGEEFCELGG--EIRLNQQVESFKENPE----SVTISTK------QG--DHLESSYALVCAGLQADEMAL  265 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~~Gv--~i~~~~~V~~i~~~~~----~v~v~~~------~g--~~i~ad~VV~aaG~~s~~l~~  265 (473)
                      .++...+.+.|.+.+++.|+  +|+++++|+++..+++    ++.|++.      +|  .+++||+||.|+|.+|. +.+
T Consensus       137 ~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S~-vR~  215 (639)
T 2dkh_A          137 ILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDGARSN-VRR  215 (639)
T ss_dssp             ECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGTTCEEEEEEEEEEECCCTTCH-HHH
T ss_pred             eeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCCCCeEEEEeCEEEECCCcchH-HHH
Confidence            45667888999999999987  9999999999998752    4665543      45  47999999999999984 778


Q ss_pred             hcCCCC
Q psy7710         266 KSGCSL  271 (473)
Q Consensus       266 ~~g~~~  271 (473)
                      .+|++.
T Consensus       216 ~lg~~~  221 (639)
T 2dkh_A          216 AIGRQL  221 (639)
T ss_dssp             HTTCCC
T ss_pred             HhCCCC
Confidence            888763

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.20  E-value=1.1e-10  Score=112.36  Aligned_cols=118  Identities=19%  Similarity=0.290  Sum_probs=86.6

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK  135 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (473)
                      ..+||+|||||++|+++|+.|+++  |.+|+|||+.+.+|+.....           .+                     
T Consensus        13 ~~~dvvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~~gg~~~~~-----------~~---------------------   58 (360)
T 3ab1_A           13 DMRDLTIIGGGPTGIFAAFQCGMN--NISCRIIESMPQLGGQLAAL-----------YP---------------------   58 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCHHHHHT-----------CT---------------------
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC--CCCEEEEecCCCCCCccccc-----------CC---------------------
Confidence            468999999999999999999999  89999999985543111000           00                     


Q ss_pred             cCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHH
Q psy7710         136 RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC  215 (473)
Q Consensus       136 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  215 (473)
                                                         .....+                  .+.-..+++..+...+.+.++
T Consensus        59 -----------------------------------~~~~~~------------------~~~~~~~~~~~~~~~l~~~~~   85 (360)
T 3ab1_A           59 -----------------------------------EKHIYD------------------VAGFPEVPAIDLVESLWAQAE   85 (360)
T ss_dssp             -----------------------------------TSEECC------------------STTCSSEEHHHHHHHHHHHHH
T ss_pred             -----------------------------------Cccccc------------------CCCCCCCCHHHHHHHHHHHHH
Confidence                                               000000                  000002345667778888888


Q ss_pred             HcCcEEEeCceEEEEEEcCC-eEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         216 ELGGEIRLNQQVESFKENPE-SVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       216 ~~Gv~i~~~~~V~~i~~~~~-~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      +.|++++++++|+++..+++ .+.|++.+|.++++|.||+|+|..+
T Consensus        86 ~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~  131 (360)
T 3ab1_A           86 RYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGA  131 (360)
T ss_dssp             TTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCS
T ss_pred             HhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCc
Confidence            88999999999999998764 7888888887899999999999864

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.20  E-value=8.5e-11  Score=111.24  Aligned_cols=112  Identities=16%  Similarity=0.227  Sum_probs=83.7

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK  135 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (473)
                      .++||+|||||++|+++|++|+++  |.+|+|||+.  +|+....  .....                            
T Consensus        14 ~~~~vvIIG~G~aGl~aA~~l~~~--g~~v~lie~~--~gg~~~~--~~~~~----------------------------   59 (323)
T 3f8d_A           14 EKFDVIIVGLGPAAYGAALYSARY--MLKTLVIGET--PGGQLTE--AGIVD----------------------------   59 (323)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESS--TTGGGGG--CCEEC----------------------------
T ss_pred             CccCEEEECccHHHHHHHHHHHHC--CCcEEEEecc--CCCeecc--ccccc----------------------------
Confidence            468999999999999999999999  8999999996  4322111  00000                            


Q ss_pred             cCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHH
Q psy7710         136 RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC  215 (473)
Q Consensus       136 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  215 (473)
                                                      .+                          +......+..+...+.+.++
T Consensus        60 --------------------------------~~--------------------------~~~~~~~~~~~~~~~~~~~~   81 (323)
T 3f8d_A           60 --------------------------------DY--------------------------LGLIEIQASDMIKVFNKHIE   81 (323)
T ss_dssp             --------------------------------CS--------------------------TTSTTEEHHHHHHHHHHHHH
T ss_pred             --------------------------------cc--------------------------CCCCCCCHHHHHHHHHHHHH
Confidence                                            00                          00001344567777888888


Q ss_pred             HcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         216 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       216 ~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      +.|+++++ ++|.++..+++.+.+++.++.++.+|.||+|+|...
T Consensus        82 ~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~  125 (323)
T 3f8d_A           82 KYEVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKR  125 (323)
T ss_dssp             TTTCCEEE-SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEE
T ss_pred             HcCCEEEE-EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCC
Confidence            89999998 999999988888889998877999999999999873

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=99.19  E-value=2.8e-10  Score=111.60  Aligned_cols=68  Identities=16%  Similarity=0.238  Sum_probs=53.1

Q ss_pred             ceeHHHHHHHHHHHHHH-cC-cEEEeCceEEEEEEcCCeEEEEcCC---C--cEEEcCEEEEcCCcChHHHHHhcCC
Q psy7710         200 IVDWGLVTRVMGEEFCE-LG-GEIRLNQQVESFKENPESVTISTKQ---G--DHLESSYALVCAGLQADEMALKSGC  269 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~-~G-v~i~~~~~V~~i~~~~~~v~v~~~~---g--~~i~ad~VV~aaG~~s~~l~~~~g~  269 (473)
                      .++...+.+.|.+.+.+ .| ++|+++++|+++.. ++++.|++.+   |  .+++||.||.|+|.+| .+.+.++.
T Consensus       103 ~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~v~v~~~~~~~g~~~~~~ad~vV~AdG~~S-~vR~~l~~  177 (410)
T 3c96_A          103 SIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDGRVLIGARDGHGKPQALGADVLVGADGIHS-AVRAHLHP  177 (410)
T ss_dssp             EEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETTEEEEEEEETTSCEEEEEESEEEECCCTTC-HHHHHHCT
T ss_pred             eeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCccEEEEecCCCCCceEEecCEEEECCCccc-hhHHHhcC
Confidence            46667888889988876 36 58999999999988 6667766543   6  5789999999999998 35555553

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=99.19  E-value=4.4e-10  Score=116.16  Aligned_cols=177  Identities=12%  Similarity=0.104  Sum_probs=97.4

Q ss_pred             CcccEEEEcCChHHHHHHHHHH---h-cCCCCeEEEEeccCcccCcccCCCcceEEeeccCC-------CchhHHHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELK---L-NYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYK-------PGTLKAKLCVE  124 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~---~-~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~-------~~~~~~~~~~~  124 (473)
                      .++||+|||||++|+++|+.|+   + +  |.+|+||||.. .++ ++..+.|.........       .+... .+   
T Consensus        21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~--G~~V~vlEK~~-~~~-s~~~a~G~~~~~~~~~~~~~~g~~ds~~-~~---   92 (643)
T 1jnr_A           21 VETDILIIGGGFSGCGAAYEAAYWAKLG--GLKVTLVEKAA-VER-SGAVAQGLSAINTYIDLTGRSERQNTLE-DY---   92 (643)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTT--TCCEEEECSSC-TTT-CSTTTTCEEEESCCCCSSSSBSCCCCHH-HH---
T ss_pred             ccCCEEEECcCHHHHHHHHHHhhhhhhC--CCeEEEEeCcC-CCC-CcceecccccccchhhHHHhcCCCCCHH-HH---
Confidence            4689999999999999999999   5 7  89999999984 443 3334445443321111       11111 11   


Q ss_pred             hHHHHHHHHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHH
Q psy7710         125 GMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWG  204 (473)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  204 (473)
                          +...... +........+.    .-.+...+.+.++..+|+ .+......   ...+.    +.    ....+++.
T Consensus        93 ----~~~~~~~-g~~l~d~~~v~----~~~~~~~~~i~~l~~~Gv-~f~~~~~g---~~~~~----~~----~~~~~~g~  151 (643)
T 1jnr_A           93 ----VRYVTLD-MMGLAREDLVA----DYARHVDGTVHLFEKWGL-PIWKTPDG---KYVRE----GQ----WQIMIHGE  151 (643)
T ss_dssp             ----HHHHHHH-TTTCCCHHHHH----HHHHHHHHHHHHHHHTTC-CBCBCTTS---CBCBS----SS----SCEEEEET
T ss_pred             ----HHHHHHH-hcCcCcHHHHH----HHHHHHHHHHHHHHHcCC-cceeCCCC---CccCC----Cc----cccCCCcH
Confidence                0111110 00000000000    001122334555666666 22211000   00000    00    00123345


Q ss_pred             HHHHHHHHHHHHc-Cc-EEEeCceEEEEEEcCC---eEE-EE---cCCCc--EEEcCEEEEcCCcChH
Q psy7710         205 LVTRVMGEEFCEL-GG-EIRLNQQVESFKENPE---SVT-IS---TKQGD--HLESSYALVCAGLQAD  261 (473)
Q Consensus       205 ~~~~~l~~~~~~~-Gv-~i~~~~~V~~i~~~~~---~v~-v~---~~~g~--~i~ad~VV~aaG~~s~  261 (473)
                      .+.+.|.+.+++. |+ +|++++.|++|..+++   .+. |.   ..+|.  .++|+.||+|||+++.
T Consensus       152 ~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~~  219 (643)
T 1jnr_A          152 SYKPIIAEAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATL  219 (643)
T ss_dssp             THHHHHHHHHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCS
T ss_pred             HHHHHHHHHHHhcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCcccc
Confidence            5777888888887 99 9999999999998765   542 32   24553  6899999999999974

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=99.19  E-value=4.4e-10  Score=114.33  Aligned_cols=67  Identities=16%  Similarity=0.343  Sum_probs=54.3

Q ss_pred             eeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCC---C--cEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710         201 VDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQ---G--DHLESSYALVCAGLQADEMALKSGCSL  271 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~---g--~~i~ad~VV~aaG~~s~~l~~~~g~~~  271 (473)
                      ++...+.+.|.+.+++.   |+++++|+++..++++|.+++.+   |  .+++||+||.|+|.+|. +.+.+|++.
T Consensus       135 i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~v~v~~~~~~~G~~~~i~a~~vVgADG~~S~-vR~~lg~~~  206 (549)
T 2r0c_A          135 CPQHWLAPLLAEAVGER---LRTRSRLDSFEQRDDHVRATITDLRTGATRAVHARYLVACDGASSP-TRKALGIDA  206 (549)
T ss_dssp             CCHHHHHHHHHHHHGGG---EECSEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEEEECCCTTCH-HHHHHTCCC
T ss_pred             cCHHHHHHHHHHHHHHh---cccCcEEEEEEEeCCEEEEEEEECCCCCEEEEEeCEEEECCCCCcH-HHHHcCCCC
Confidence            45567778888888776   89999999999988887766543   5  47999999999999985 778888764

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=99.18  E-value=1.3e-09  Score=105.79  Aligned_cols=66  Identities=18%  Similarity=0.353  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChH-HHHHhcCCCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD-EMALKSGCSL  271 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~-~l~~~~g~~~  271 (473)
                      +.+.+.+.+++.|++++++++|+++..+++++.|++.+|.++++|.||+|+|..+. .+++.+|++.
T Consensus       189 ~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~~~l~~~~g~~~  255 (384)
T 2v3a_A          189 AAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRTELAFAAGLAV  255 (384)
T ss_dssp             HHHHHHHHHHTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCHHHHHTTCCB
T ss_pred             HHHHHHHHHHHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCcCHHHHHHCCCCC
Confidence            44557777888999999999999999877788888888888999999999999853 5888888764

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.18  E-value=3e-11  Score=121.99  Aligned_cols=59  Identities=15%  Similarity=0.058  Sum_probs=49.8

Q ss_pred             ceeHHHHHHHHHHHHHH-cCcEEEeCceEEEEEEcCCeE-EEEcCCCcEEEcCEEEEcCCcC
Q psy7710         200 IVDWGLVTRVMGEEFCE-LGGEIRLNQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQ  259 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~v-~v~~~~g~~i~ad~VV~aaG~~  259 (473)
                      .++...+...|.+.+++ .|++| ++++|++|..+++.+ .|.+.+|..++||.||+|+|.+
T Consensus       119 ~~Dr~~~~~~L~~~Le~~~GVeI-~~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~  179 (637)
T 2zxi_A          119 QADKKRYREYMKKVCENQENLYI-KQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTF  179 (637)
T ss_dssp             EECHHHHHHHHHHHHHTCTTEEE-EESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTC
T ss_pred             hCCHHHHHHHHHHHHHhCCCCEE-EEeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCC
Confidence            45677888999999988 59999 578999998877665 5888888889999999999975

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.18  E-value=1.3e-10  Score=117.52  Aligned_cols=60  Identities=12%  Similarity=0.177  Sum_probs=51.1

Q ss_pred             eeHHHHHHHHHHHHHHcCc--EEEeCceEEEEEEcCC--eEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         201 VDWGLVTRVMGEEFCELGG--EIRLNQQVESFKENPE--SVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~~Gv--~i~~~~~V~~i~~~~~--~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      .+...+...+.+.+++.|+  .++++++|+++..+++  .|.|++.+|.+++||.||+|+|.++
T Consensus        84 ~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s  147 (540)
T 3gwf_A           84 ITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLS  147 (540)
T ss_dssp             EEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCC
T ss_pred             CCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccc
Confidence            4456677778888888888  8999999999987764  7899999997899999999999875

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=99.17  E-value=1.5e-10  Score=109.13  Aligned_cols=58  Identities=12%  Similarity=0.164  Sum_probs=48.4

Q ss_pred             eHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         202 DWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       202 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      ++..+...+.+.+++.|+++++ ++|.++..+++.+.|.+.+|.++++|.||+|+|.++
T Consensus        57 ~~~~~~~~l~~~~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~  114 (311)
T 2q0l_A           57 SGLDFMQPWQEQCFRFGLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSP  114 (311)
T ss_dssp             CHHHHHHHHHHHHHTTSCEEEC-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEE
T ss_pred             CHHHHHHHHHHHHHHcCCEEEE-EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCC
Confidence            4456677788888888999987 889999988888888777777899999999999764

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=99.16  E-value=7.2e-10  Score=103.39  Aligned_cols=43  Identities=33%  Similarity=0.608  Sum_probs=37.3

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQ   98 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~   98 (473)
                      .++||+|||||++|+++|+.|+++++|.+|+|+|+.+.+|++.
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~  106 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGS  106 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTT
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccc
Confidence            4579999999999999999999986679999999987666543

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=99.16  E-value=5.8e-11  Score=114.74  Aligned_cols=59  Identities=15%  Similarity=0.090  Sum_probs=50.9

Q ss_pred             eeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         201 VDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      +.+..+...+.+.+++.|++++++++|+++..+++.+.|.+.++ ++.+|.||+|+|.++
T Consensus        85 ~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~  143 (369)
T 3d1c_A           85 ISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYN  143 (369)
T ss_dssp             CBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTT
T ss_pred             CCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCC
Confidence            44566777788888889999999999999998877788888887 799999999999985

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.16  E-value=1.3e-10  Score=110.51  Aligned_cols=116  Identities=21%  Similarity=0.308  Sum_probs=85.9

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK  135 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (473)
                      ..+||+|||||++|+++|+.|+++  |.+|+|||+.+.+|+....          . .+                     
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~--g~~v~lie~~~~~gG~~~~----------~-~~---------------------   51 (332)
T 3lzw_A            6 KVYDITIIGGGPVGLFTAFYGGMR--QASVKIIESLPQLGGQLSA----------L-YP---------------------   51 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCHHHHH----------H-CT---------------------
T ss_pred             ccceEEEECCCHHHHHHHHHHHHC--CCCEEEEEcCCCCCceehh----------c-CC---------------------
Confidence            357999999999999999999999  8999999998654311100          0 00                     


Q ss_pred             cCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHH
Q psy7710         136 RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC  215 (473)
Q Consensus       136 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  215 (473)
                                                         .....+                  .+.-..+.+..+...+.+.++
T Consensus        52 -----------------------------------~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~   78 (332)
T 3lzw_A           52 -----------------------------------EKYIYD------------------VAGFPKIRAQELINNLKEQMA   78 (332)
T ss_dssp             -----------------------------------TSEECC------------------STTCSSEEHHHHHHHHHHHHT
T ss_pred             -----------------------------------CceEec------------------cCCCCCCCHHHHHHHHHHHHH
Confidence                                               000000                  000012345677888888888


Q ss_pred             HcCcEEEeCceEEEEEEcCC-eEEEEcCCCcEEEcCEEEEcCCcC
Q psy7710         216 ELGGEIRLNQQVESFKENPE-SVTISTKQGDHLESSYALVCAGLQ  259 (473)
Q Consensus       216 ~~Gv~i~~~~~V~~i~~~~~-~v~v~~~~g~~i~ad~VV~aaG~~  259 (473)
                      +.|++++++++|+++..+++ .+.|++.+| ++.+|.||+|+|..
T Consensus        79 ~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vVlAtG~~  122 (332)
T 3lzw_A           79 KFDQTICLEQAVESVEKQADGVFKLVTNEE-THYSKTVIITAGNG  122 (332)
T ss_dssp             TSCCEEECSCCEEEEEECTTSCEEEEESSE-EEEEEEEEECCTTS
T ss_pred             HhCCcEEccCEEEEEEECCCCcEEEEECCC-EEEeCEEEECCCCC
Confidence            89999999999999998876 788999888 59999999999984

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=99.13  E-value=9.1e-11  Score=119.03  Aligned_cols=199  Identities=14%  Similarity=0.034  Sum_probs=108.0

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc-----------------------------------------
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL-----------------------------------------   94 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~-----------------------------------------   94 (473)
                      ..||+||||||.+|+++|.+|++.+ ..+|+|||+++..                                         
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~-~~~VLllEaG~~~~~~~~~i~~P~~~~~~~~~~~dW~y~t~~~~r~~~~~~~~~   83 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENP-NVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWAYKTTMVRRDDYERIEKP   83 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTST-TSCEEEECSSCSCGGGCHHHHCGGGGGGGTTSTTBCCEEEEEEEETTEEEEEEE
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCC-CCcEEEEecCCCCCCCCceEECchhhhhccCCCcccceEEEECCcccccccccc
Confidence            5699999999999999999999982 3799999998540                                         


Q ss_pred             ------cCcccCCCcceEEeeccCCCchhHHH----HHHHhHHHHHHHHHhc-CCC--------C-cccCeEEEEeCc-C
Q psy7710          95 ------GMHQTGHNSGVVHAGIYYKPGTLKAK----LCVEGMNLAYEYFDKR-NIP--------Y-KKCGKLIVALNE-Q  153 (473)
Q Consensus        95 ------g~~~s~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~--------~-~~~g~l~~~~~~-~  153 (473)
                            -||+|..|+++...+...+.+.+...    |.+.....+.+-.+.+ ...        + ...|.+.+.... .
T Consensus        84 ~~rGkvLGGsS~iN~m~~~rg~~~dyd~W~~~G~~gW~~~~~lpyf~k~e~~~~~~~~~~~~~~~hG~~Gpl~v~~~~~~  163 (577)
T 3q9t_A           84 NTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELI  163 (577)
T ss_dssp             ECCBCSTTGGGGTSCCEECCCCHHHHHTTHHHHCGGGSHHHHHHHHHHTEEEECTTCCSCGGGGGGCCSCSEEEEECCCC
T ss_pred             ccccccccCccccCceEeccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCCccccCCccccCCCCCCEEeeCCCCC
Confidence                  24566677666554432111222110    1122221111111111 100        1 234666666544 2


Q ss_pred             h---hhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecC----CccceeHHHHHHHHHHHHHHcCcEEEeCce
Q psy7710         154 L---EPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSP----NTGIVDWGLVTRVMGEEFCELGGEIRLNQQ  226 (473)
Q Consensus       154 ~---~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~  226 (473)
                      .   .....+.+.+.+.|++...-...       .  ...+..+.+    .........+      ...+.|++|++++.
T Consensus       164 ~~~~~~~~~~~~a~~~~G~~~~~d~n~-------~--~~~G~~~~~~~~~~g~R~s~~~~------l~~r~Nl~v~~~a~  228 (577)
T 3q9t_A          164 DEMAPFRENLTKAWKSMGQPLIENIYD-------G--EMDGLTHCCDTIYRGQRSGSFLF------VKNKPNITIVPEVH  228 (577)
T ss_dssp             GGGHHHHHHHHHHHHHTTCCBCSCCSS-------S--CCCEEEECEESEETTEECCGGGG------SSSCTTEEEECSEE
T ss_pred             cccchHHHHHHHHHHHcCCCcCCCCCC-------C--CcCeEEeecceecCCeEeeHHHH------HhcCCCeEEEcCcE
Confidence            1   23344556666777621110000       0  001111111    1111111111      12456999999999


Q ss_pred             EEEEEEc--CCeE---EEEcCCCc--EEEc-CEEEEcCCcC-hHHHHHhcCCC
Q psy7710         227 VESFKEN--PESV---TISTKQGD--HLES-SYALVCAGLQ-ADEMALKSGCS  270 (473)
Q Consensus       227 V~~i~~~--~~~v---~v~~~~g~--~i~a-d~VV~aaG~~-s~~l~~~~g~~  270 (473)
                      |++|..+  ++.+   .+...+|.  +++| +.||+|+|++ +++|+..+||.
T Consensus       229 v~ri~~~~~~~~a~GV~~~~~~g~~~~v~A~keVILsaGa~~sp~lL~~SGIG  281 (577)
T 3q9t_A          229 SKRLIINEADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLMLSGIG  281 (577)
T ss_dssp             EEEEEEETTTTEEEEEEEEETTSCEEEEEEEEEEEECSHHHHHHHHHHHTTEE
T ss_pred             EEEEEEeCCCCEEEEEEEEeCCCcEEEEEeeeEEEEcccccCChHHHHHcCCC
Confidence            9999987  5433   34444453  5678 5699999998 78888777653

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=99.13  E-value=2.8e-10  Score=107.67  Aligned_cols=113  Identities=17%  Similarity=0.251  Sum_probs=81.5

Q ss_pred             CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHH
Q psy7710          55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFD  134 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (473)
                      ..++||+|||||++|+++|+.|+++  |.+|+|+|+. .+|+.......      .                        
T Consensus        14 ~~~~dvvIIG~G~aGl~aA~~l~~~--g~~v~lie~~-~~gg~~~~~~~------~------------------------   60 (319)
T 3cty_A           14 ERDFDVVIVGAGAAGFSAAVYAARS--GFSVAILDKA-VAGGLTAEAPL------V------------------------   60 (319)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESS-STTGGGGGCSC------B------------------------
T ss_pred             cCCCcEEEECcCHHHHHHHHHHHhC--CCcEEEEeCC-CCCccccccch------h------------------------
Confidence            3568999999999999999999999  8999999996 45432211000      0                        


Q ss_pred             hcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHH
Q psy7710         135 KRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEF  214 (473)
Q Consensus       135 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  214 (473)
                                                      ...+..                          ..++...+...+.+.+
T Consensus        61 --------------------------------~~~~~~--------------------------~~~~~~~~~~~~~~~~   82 (319)
T 3cty_A           61 --------------------------------ENYLGF--------------------------KSIVGSELAKLFADHA   82 (319)
T ss_dssp             --------------------------------CCBTTB--------------------------SSBCHHHHHHHHHHHH
T ss_pred             --------------------------------hhcCCC--------------------------cccCHHHHHHHHHHHH
Confidence                                            000000                          0122345666677788


Q ss_pred             HHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         215 CELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       215 ~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      ++.|++++. .+|.++..+++.+.|.+++ .++++|.||+|+|.++
T Consensus        83 ~~~~v~~~~-~~v~~i~~~~~~~~v~~~~-~~~~~~~li~AtG~~~  126 (319)
T 3cty_A           83 ANYAKIREG-VEVRSIKKTQGGFDIETND-DTYHAKYVIITTGTTH  126 (319)
T ss_dssp             HTTSEEEET-CCEEEEEEETTEEEEEESS-SEEEEEEEEECCCEEE
T ss_pred             HHcCCEEEE-eeEEEEEEeCCEEEEEECC-CEEEeCEEEECCCCCc
Confidence            888999987 7899998877778787744 4899999999999864

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.13  E-value=2.7e-10  Score=115.43  Aligned_cols=60  Identities=20%  Similarity=0.251  Sum_probs=50.3

Q ss_pred             eeHHHHHHHHHHHHHHcCc--EEEeCceEEEEEEcCC--eEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         201 VDWGLVTRVMGEEFCELGG--EIRLNQQVESFKENPE--SVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~~Gv--~i~~~~~V~~i~~~~~--~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      .+...+...+.+.+++.|+  .++++++|+++..+++  .|.|++.+|.+++||.||+|+|.++
T Consensus        96 ~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s  159 (549)
T 4ap3_A           96 ATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLS  159 (549)
T ss_dssp             CBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEE
T ss_pred             CCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCC
Confidence            3445677778888888888  8999999999987664  7899999998899999999999765

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=99.13  E-value=6.7e-11  Score=119.85  Aligned_cols=60  Identities=12%  Similarity=0.128  Sum_probs=49.9

Q ss_pred             ceeHHHHHHHHHHHHHHc-CcEEEeCceEEEEEEcCCeEE-EEcCCCcEEEcCEEEEcCCcCh
Q psy7710         200 IVDWGLVTRVMGEEFCEL-GGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~v~-v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      .++...+...+.+.+++. |++++ +..|+.+..+++.+. |.+.+|..++||.||+|+|.|+
T Consensus       113 ~~Dr~~l~~~L~~~l~~~~GV~I~-~~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s  174 (641)
T 3cp8_A          113 QADKTQYSLYMRRIVEHEPNIDLL-QDTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFL  174 (641)
T ss_dssp             EECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCB
T ss_pred             hcCHHHHHHHHHHHHHhCCCCEEE-eeEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCC
Confidence            467778888899888874 99995 568999988777765 8888888899999999999874

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=99.13  E-value=7.6e-10  Score=110.27  Aligned_cols=68  Identities=13%  Similarity=0.156  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCe-EEEE-cCCCcEEEcCEEEEcCCcChH-HH--HHhcCCCC
Q psy7710         203 WGLVTRVMGEEFCELGGEIRLNQQVESFKENPES-VTIS-TKQGDHLESSYALVCAGLQAD-EM--ALKSGCSL  271 (473)
Q Consensus       203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-v~v~-~~~g~~i~ad~VV~aaG~~s~-~l--~~~~g~~~  271 (473)
                      +..+.+.+.+.+++.|++++++++|+++..++++ +.|+ +.+|+ +.+|.||+|+|...+ .+  ++.+|++.
T Consensus       210 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~  282 (463)
T 4dna_A          210 DQDMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPNTNGLGLEAAGVRT  282 (463)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEESCTTSSTGGGTCCB
T ss_pred             CHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccCCCCCCccccCceE
Confidence            3567888999999999999999999999987544 6788 88885 999999999998743 32  56666654

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.13  E-value=1.3e-10  Score=117.72  Aligned_cols=60  Identities=8%  Similarity=0.096  Sum_probs=49.0

Q ss_pred             eHHHHHHHHHHHHHHcCc--EEEeCceEEEEEEcC--CeEEEEcCCCcEEEcCEEEEcCCcChH
Q psy7710         202 DWGLVTRVMGEEFCELGG--EIRLNQQVESFKENP--ESVTISTKQGDHLESSYALVCAGLQAD  261 (473)
Q Consensus       202 ~~~~~~~~l~~~~~~~Gv--~i~~~~~V~~i~~~~--~~v~v~~~~g~~i~ad~VV~aaG~~s~  261 (473)
                      ....+...+.+.+++.|+  .++++++|+++..++  +.|.|++.+|.+++||.||+|+|.++.
T Consensus        85 ~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~  148 (545)
T 3uox_A           85 SQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSA  148 (545)
T ss_dssp             BHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC
T ss_pred             CHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCC
Confidence            445566677777777787  799999999998654  578999999988999999999998753

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.13  E-value=2.8e-10  Score=114.21  Aligned_cols=60  Identities=12%  Similarity=0.055  Sum_probs=48.7

Q ss_pred             eeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEc---CCeEEEEc--C-CC--cEEEcCEEEEcCCcCh
Q psy7710         201 VDWGLVTRVMGEEFCELGGEIRLNQQVESFKEN---PESVTIST--K-QG--DHLESSYALVCAGLQA  260 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~---~~~v~v~~--~-~g--~~i~ad~VV~aaG~~s  260 (473)
                      ++...+...|.+.+++.|++|+++++|+++..+   ++.+.|++  . +|  .+++||.||+|+|.++
T Consensus       163 ~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S  230 (497)
T 2bry_A          163 ISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKF  230 (497)
T ss_dssp             EEHHHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTC
T ss_pred             CCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCc
Confidence            445678888999999999999999999999864   34566655  4 55  4789999999999997

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=99.13  E-value=3.8e-10  Score=114.89  Aligned_cols=72  Identities=15%  Similarity=0.165  Sum_probs=59.3

Q ss_pred             ccceeHHHHHHHHHHHHHHc-CcEEEeCceEEEEEEcCCe--EEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710         198 TGIVDWGLVTRVMGEEFCEL-GGEIRLNQQVESFKENPES--VTISTKQGDHLESSYALVCAGLQADEMALKSGCS  270 (473)
Q Consensus       198 ~~~~~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~--v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~  270 (473)
                      ...+++..+.+.|.+.+++. |++++++ +|+++..++++  +.|++.+|.+++||.||.|+|.+|..+.+.+|+.
T Consensus       188 ~~~~~~~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~~~~~~lg~~  262 (550)
T 2e4g_A          188 AWHFDAHLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLLINKAMEEP  262 (550)
T ss_dssp             EEEECHHHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCCCCCCCTCCC
T ss_pred             ceEEcHHHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchhhHHHHhCCC
Confidence            34588899999999999998 9999999 99999876443  5688888878999999999999986545556653

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.13  E-value=4.5e-10  Score=111.46  Aligned_cols=60  Identities=15%  Similarity=0.056  Sum_probs=49.5

Q ss_pred             eeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCC---Cc---EEEcCEEEEcCCcCh
Q psy7710         201 VDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQ---GD---HLESSYALVCAGLQA  260 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~---g~---~i~ad~VV~aaG~~s  260 (473)
                      .....+.+.+.+.+++.+..++++++|+++..+++.|.|++.+   |.   ++.+|.||+|+|.++
T Consensus       112 ~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~~~~~d~VVvAtG~~s  177 (447)
T 2gv8_A          112 PHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYE  177 (447)
T ss_dssp             CBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEESEEEECCCSSS
T ss_pred             CCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeEEEEeCEEEECCCCCC
Confidence            3456677778888887788999999999999888888877654   65   689999999999976

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=99.12  E-value=1.1e-09  Score=107.28  Aligned_cols=66  Identities=21%  Similarity=0.393  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh-HHHHHhcCCCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA-DEMALKSGCSL  271 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s-~~l~~~~g~~~  271 (473)
                      +.+.+.+.+++.|+++++++.|+++..++....|++.+|++++||.||+|+|... ..+++.+|++.
T Consensus       187 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~~l~~~~gl~~  253 (410)
T 3ef6_A          187 IGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEPADQLARQAGLAC  253 (410)
T ss_dssp             HHHHHHHHHHHHTCEEECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEEECCHHHHHTTCCB
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCeecHHHHHhCCCcc
Confidence            4555777788899999999999999877655578888888999999999999984 46888888764

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.12  E-value=3.5e-10  Score=105.66  Aligned_cols=58  Identities=9%  Similarity=0.042  Sum_probs=47.4

Q ss_pred             eHHHHHHHHHHHHHHc-CcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         202 DWGLVTRVMGEEFCEL-GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       202 ~~~~~~~~l~~~~~~~-Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      .+..+...+.+.+++. +++++ +++|+++..+++.+.|++.+|.++++|.||+|+|...
T Consensus        54 ~~~~~~~~~~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~  112 (297)
T 3fbs_A           54 APGEIIAEARRQIERYPTIHWV-EGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTD  112 (297)
T ss_dssp             CHHHHHHHHHHHHTTCTTEEEE-ESCEEEEEEETTEEEEEETTSCEEEEEEEEECCCCEE
T ss_pred             CHHHHHHHHHHHHHhcCCeEEE-EeEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCC
Confidence            3455677777888776 67776 4599999988888999998887899999999999864

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.12  E-value=2.3e-10  Score=109.00  Aligned_cols=59  Identities=15%  Similarity=0.218  Sum_probs=49.2

Q ss_pred             eeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcC---CCcEEEcCEEEEcCCcCh
Q psy7710         201 VDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTK---QGDHLESSYALVCAGLQA  260 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~---~g~~i~ad~VV~aaG~~s  260 (473)
                      +.+..+...+.+.+++.|+++++++ |.++..+++.+.+.+.   ++..+.+|.||+|+|...
T Consensus        81 ~~~~~~~~~~~~~~~~~gv~i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~  142 (338)
T 3itj_A           81 LTGSELMDRMREQSTKFGTEIITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASA  142 (338)
T ss_dssp             EEHHHHHHHHHHHHHHTTCEEECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEE
T ss_pred             CCHHHHHHHHHHHHHHcCCEEEEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCc
Confidence            3456677888888999999999988 9999988888888773   556899999999999863

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.11  E-value=1.1e-09  Score=110.83  Aligned_cols=54  Identities=20%  Similarity=0.322  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      ..+.+.|.+.   .|++|+++++|++|..+++++.|++.+|++++||+||+|++.+.
T Consensus       215 ~~l~~~l~~~---lg~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~  268 (520)
T 1s3e_A          215 GQVSERIMDL---LGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTL  268 (520)
T ss_dssp             HHHHHHHHHH---HGGGEESSCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGGG
T ss_pred             HHHHHHHHHH---cCCcEEcCCeeEEEEECCCeEEEEECCCeEEEeCEEEECCCHHH
Confidence            4455555544   37899999999999988888889998888899999999999874

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=99.11  E-value=1.2e-09  Score=109.18  Aligned_cols=69  Identities=12%  Similarity=0.222  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh-HHHHHhcCCCC
Q psy7710         203 WGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA-DEMALKSGCSL  271 (473)
Q Consensus       203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s-~~l~~~~g~~~  271 (473)
                      ...+.+.+.+.+++.|++++++++|+++..+++.+.|.+.+|+++++|.||+|+|... ..+++.+|++.
T Consensus       201 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~gl~~  270 (472)
T 3iwa_A          201 SKSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGVSPNTQLARDAGLEL  270 (472)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEESSCEEECSEEEECSCEEECCHHHHHHTCCB
T ss_pred             CHHHHHHHHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEeCCCEEEcCEEEECCCCCcCHHHHHhCCccC
Confidence            3567888899999999999999999999987777777777887899999999999984 46788888764

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.10  E-value=2.5e-10  Score=115.43  Aligned_cols=54  Identities=9%  Similarity=0.115  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcC
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ  259 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~  259 (473)
                      ..+.+.|.+.+.+.|++|+++++|++|..+++.+  ++.+|.+++||+||.++...
T Consensus       222 ~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~~~~v--~~~~G~~~~ad~vI~t~P~~  275 (513)
T 4gde_A          222 GGIWIAVANTLPKEKTRFGEKGKVTKVNANNKTV--TLQDGTTIGYKKLVSTMAVD  275 (513)
T ss_dssp             HHHHHHHHHTSCGGGEEESGGGCEEEEETTTTEE--EETTSCEEEEEEEEECSCHH
T ss_pred             HHHHHHHHHHHHhcCeeeecceEEEEEEccCCEE--EEcCCCEEECCEEEECCCHH
Confidence            6788889888889999999999999999877654  45678899999999988654

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=99.09  E-value=4.8e-09  Score=108.81  Aligned_cols=71  Identities=15%  Similarity=0.299  Sum_probs=55.7

Q ss_pred             ceeHHHHHHHHHHHHHHcC---cEEEeCceEEEEEEcC--------CeEEEEc---------------------------
Q psy7710         200 IVDWGLVTRVMGEEFCELG---GEIRLNQQVESFKENP--------ESVTIST---------------------------  241 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~~G---v~i~~~~~V~~i~~~~--------~~v~v~~---------------------------  241 (473)
                      .++...+.+.|.+.+++.|   ++|+++++|+++..++        ..|.|+.                           
T Consensus       115 ~l~q~~le~~L~~~~~~~g~~~v~v~~g~~v~~~~~d~~~~~~~~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  194 (665)
T 1pn0_A          115 VLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTPLQFGHKTENGLFRSNLQ  194 (665)
T ss_dssp             ECCHHHHHHHHHHHHHHHHTTSSCEECSEEEEEEEECGGGTTCTTCCCEEEEEEECCGGGSCCCTTCCCCCSSSCCCHHH
T ss_pred             EeeHHHHHHHHHHHHHhcCCCceEEEeCCEEEEEEecCcccccCCCCCEEEEEEeccccccccccccccccccccccccc
Confidence            3566778888999998887   8999999999998764        3565532                           


Q ss_pred             ---------------CCC--cEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710         242 ---------------KQG--DHLESSYALVCAGLQADEMALKSGCSL  271 (473)
Q Consensus       242 ---------------~~g--~~i~ad~VV~aaG~~s~~l~~~~g~~~  271 (473)
                                     .+|  .+++||+||-|.|.+| .+.+.+|++.
T Consensus       195 ~~~~~d~~~~~~~~~~~G~~~~i~A~~VVGADG~~S-~VR~~lg~~~  240 (665)
T 1pn0_A          195 TQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHS-WVRRTLGFEM  240 (665)
T ss_dssp             HHHHHHTSCCCSTTCCTTCEEEEEEEEEEECCCTTC-HHHHHHTCCC
T ss_pred             ccccccccccccccCCCCceEEEEeCEEEeccCCCC-HHHHhcCCCC
Confidence                           234  4789999999999998 4777888764

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=99.08  E-value=3.3e-09  Score=103.70  Aligned_cols=66  Identities=14%  Similarity=0.248  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeE-EEEcCCCcEEEcCEEEEcCCcC-hHHHHHhcCCCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQ-ADEMALKSGCSL  271 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v-~v~~~~g~~i~ad~VV~aaG~~-s~~l~~~~g~~~  271 (473)
                      +.+.+.+.+++.|++++++++|+++..+++.+ .|++.+|+++.||.||+|+|.. ...+++.+|+..
T Consensus       186 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~  253 (404)
T 3fg2_P          186 ISSYFHDRHSGAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAAAAGLPT  253 (404)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCB
T ss_pred             HHHHHHHHHHhCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCCccCHHHHHhCCCCC
Confidence            55567788888999999999999999876665 5888888899999999999998 446888888765

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=99.08  E-value=1.9e-09  Score=105.61  Aligned_cols=64  Identities=11%  Similarity=0.155  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcC-CeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENP-ESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSL  271 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~  271 (473)
                      ..+.+.|.+.   .+.+|+++++|++++..+ +++.|++.+|.+++||.||-|.|.+| .+.+.++...
T Consensus       112 ~~L~~~L~~~---~~~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S-~vR~~l~~~~  176 (412)
T 4hb9_A          112 TELKEILNKG---LANTIQWNKTFVRYEHIENGGIKIFFADGSHENVDVLVGADGSNS-KVRKQYLPFI  176 (412)
T ss_dssp             HHHHHHHHTT---CTTTEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECCCTTC-HHHHHHSTTC
T ss_pred             HHHHHHHHhh---ccceEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEEEECCCCCc-chHHHhCCCc
Confidence            4444444433   356789999999998754 56889999999999999999999998 4566665543

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.08  E-value=8.5e-10  Score=110.51  Aligned_cols=58  Identities=10%  Similarity=0.209  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEc---CCCcEEEcCEEEEcCCcCh-HHHH
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTIST---KQGDHLESSYALVCAGLQA-DEMA  264 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~---~~g~~i~ad~VV~aaG~~s-~~l~  264 (473)
                      ..+.+.|.+.+   |++|+++++|++|..+++++.|++   .+|.+++||.||+|++.+. ..|+
T Consensus       238 ~~l~~~l~~~l---g~~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~ad~vV~a~~~~~~~~ll  299 (478)
T 2ivd_A          238 QVLIDALAASL---GDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLL  299 (478)
T ss_dssp             HHHHHHHHHHH---GGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHHHHHHHH
T ss_pred             HHHHHHHHHHh---hhhEEcCCEEEEEEecCCeEEEEEeecCCCceEEcCEEEECCCHHHHHHHh
Confidence            45666676665   679999999999998777788887   6666899999999999884 3444

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.08  E-value=4e-10  Score=106.25  Aligned_cols=119  Identities=18%  Similarity=0.244  Sum_probs=81.2

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK  135 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (473)
                      ..|||+|||||++|+++|++|+++  |++|+|+|+. ..++.+.+   |++...                          
T Consensus         3 ~~yDvvIIG~GpAGl~AA~~la~~--g~~v~liE~~-~~gg~~~~---G~~~~~--------------------------   50 (314)
T 4a5l_A            3 NIHDVVIIGSGPAAHTAAIYLGRS--SLKPVMYEGF-MAGGVAAG---GQLTTT--------------------------   50 (314)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT--TCCCEEECCS-SGGGCCTT---CGGGGS--------------------------
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHC--CCCEEEEecC-CCCCcccC---CCcCCh--------------------------
Confidence            469999999999999999999999  9999999997 44432211   111000                          


Q ss_pred             cCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHH
Q psy7710         136 RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC  215 (473)
Q Consensus       136 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  215 (473)
                                                           ..+.      .+|.+        +  ..+.+..+...+.+.++
T Consensus        51 -------------------------------------~~i~------~~~g~--------~--~~i~~~~l~~~~~~~~~   77 (314)
T 4a5l_A           51 -------------------------------------TIIE------NFPGF--------P--NGIDGNELMMNMRTQSE   77 (314)
T ss_dssp             -------------------------------------SEEC------CSTTC--------T--TCEEHHHHHHHHHHHHH
T ss_pred             -------------------------------------HHhh------hccCC--------c--ccCCHHHHHHHHHHHHh
Confidence                                                 0000      00000        0  02345667777888888


Q ss_pred             HcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         216 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       216 ~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      +.+.++.. ..|..+....+...+.+.++.++++|.||+|||+..
T Consensus        78 ~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~  121 (314)
T 4a5l_A           78 KYGTTIIT-ETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATA  121 (314)
T ss_dssp             HTTCEEEC-CCEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEE
T ss_pred             hcCcEEEE-eEEEEeecCCCceEEEECCCeEEEEeEEEEcccccc
Confidence            89998865 456666666666667777777999999999999753

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=99.08  E-value=6.2e-10  Score=105.52  Aligned_cols=114  Identities=15%  Similarity=0.209  Sum_probs=81.2

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK  135 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (473)
                      .++||+|||||++|+++|+.|++.  |.+|+|||+. .+|+.......  +    ...                      
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~--g~~v~lie~~-~~gg~~~~~~~--~----~~~----------------------   55 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRA--QLSTLILEKG-MPGGQIAWSEE--V----ENF----------------------   55 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESS-CTTGGGGGCSC--B----CCS----------------------
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHc--CCcEEEEeCC-CCCcccccccc--c----ccC----------------------
Confidence            468999999999999999999999  8999999998 55432211000  0    000                      


Q ss_pred             cCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHH
Q psy7710         136 RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC  215 (473)
Q Consensus       136 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  215 (473)
                                                     .++ .                           ..+.+..+...+.+.++
T Consensus        56 -------------------------------~~~-~---------------------------~~~~~~~~~~~l~~~~~   76 (325)
T 2q7v_A           56 -------------------------------PGF-P---------------------------EPIAGMELAQRMHQQAE   76 (325)
T ss_dssp             -------------------------------TTC-S---------------------------SCBCHHHHHHHHHHHHH
T ss_pred             -------------------------------CCC-C---------------------------CCCCHHHHHHHHHHHHH
Confidence                                           000 0                           01233456667778888


Q ss_pred             HcCcEEEeCceEEEEEEc--CCe-EEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         216 ELGGEIRLNQQVESFKEN--PES-VTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       216 ~~Gv~i~~~~~V~~i~~~--~~~-v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      +.|++++. .+|.++..+  ++. +.|.+.+|.++++|+||+|+|..+
T Consensus        77 ~~gv~~~~-~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~  123 (325)
T 2q7v_A           77 KFGAKVEM-DEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADP  123 (325)
T ss_dssp             HTTCEEEE-CCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEE
T ss_pred             HcCCEEEe-eeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCc
Confidence            89999987 689999876  443 666666777899999999999864

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=99.06  E-value=3.8e-10  Score=107.41  Aligned_cols=58  Identities=12%  Similarity=0.083  Sum_probs=48.5

Q ss_pred             eeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         201 VDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      +++..+...+.+.+++.|++++.++ |.++..+++.+.|++ ++.++++|.||+|+|.++
T Consensus        67 ~~~~~~~~~l~~~~~~~gv~~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~  124 (333)
T 1vdc_A           67 ILGVELTDKFRKQSERFGTTIFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGAVA  124 (333)
T ss_dssp             EEHHHHHHHHHHHHHHTTCEEECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEE
T ss_pred             CCHHHHHHHHHHHHHHCCCEEEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCc
Confidence            3455677778888888999999887 999988777788888 666899999999999985

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=99.05  E-value=4.7e-10  Score=117.54  Aligned_cols=43  Identities=23%  Similarity=0.342  Sum_probs=38.5

Q ss_pred             cCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcC
Q psy7710         217 LGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ  259 (473)
Q Consensus       217 ~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~  259 (473)
                      .|++|+++++|++|..+++++.|++.+|.+++||+||+|+...
T Consensus       542 ~gl~I~l~t~V~~I~~~~~~v~V~~~~G~~i~Ad~VIvA~P~~  584 (776)
T 4gut_A          542 EGLDIQLKSPVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLA  584 (776)
T ss_dssp             TTSCEESSCCEEEEECSSSSEEEEETTCCEEEESEEEECCCHH
T ss_pred             hCCcEEcCCeeEEEEEcCCEEEEEECCCcEEEcCEEEECCCHH
Confidence            4889999999999999888899999888789999999999643

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=99.05  E-value=8.6e-10  Score=111.83  Aligned_cols=203  Identities=15%  Similarity=0.127  Sum_probs=108.2

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccC--------cc-----cCCC------------cceEEe--
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGM--------HQ-----TGHN------------SGVVHA--  108 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~--------~~-----s~~~------------~g~~~~--  108 (473)
                      ..+|++|||+|.+|+++|++|++. ++.+|+|||++.....        ..     +..+            ..+...  
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~-~~~~v~~~e~g~~~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~rG   90 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSED-PAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDYPIEPQENGNSFMRHARA   90 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTS-TTSCEEEECSSCCCTTCHHHHBGGGGGGGTTSTTBCCEEBCCCSSSCTTCEECCB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhC-CCCCEEEEecCCcCCCCccccChhhHHhhcCCcccccccccccCCCCceEEeecc
Confidence            469999999999999999999986 3789999999843321        00     0000            000000  


Q ss_pred             -----------eccCCCc-hhHHHHH---------HHhHHHHHHHHHhc-C----CCC-cccCeEEEEeCc-ChhhHHHH
Q psy7710         109 -----------GIYYKPG-TLKAKLC---------VEGMNLAYEYFDKR-N----IPY-KKCGKLIVALNE-QLEPLHDL  160 (473)
Q Consensus       109 -----------~~~~~~~-~~~~~~~---------~~~~~~~~~~~~~~-~----~~~-~~~g~l~~~~~~-~~~~~~~~  160 (473)
                                 ..+.... ..+..+.         +.....+.+..++. +    ..+ ...|.+.+.... .....+.+
T Consensus        91 k~lGGsS~in~~~~~R~~~~d~d~w~~~~G~~gW~~~~l~pyf~k~e~~~~~~~~~~~~g~~Gpl~v~~~~~~~~~~~~~  170 (546)
T 2jbv_A           91 KVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKDPTGVAL  170 (546)
T ss_dssp             CSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEETTCBTTBTTSCBSCSEEEEECCSCCHHHHHH
T ss_pred             cccccCccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhccCCCCccccCCCCCCEEEecCCCCCHHHHHH
Confidence                       0000110 0111121         12222222222221 1    112 234667765544 45555666


Q ss_pred             HHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecC-----CccceeHHHHHHHHHHHH-HHcCcEEEeCceEEEEEEcC
Q psy7710         161 YERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSP-----NTGIVDWGLVTRVMGEEF-CELGGEIRLNQQVESFKENP  234 (473)
Q Consensus       161 ~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~-~~~Gv~i~~~~~V~~i~~~~  234 (473)
                      .+.+.+.|++. .  +...     ......+..+++     ......   ....+.+.+ ++.|++|++++.|++|..++
T Consensus       171 ~~a~~~~G~~~-~--d~n~-----~~~~~~g~~~~~~~~~~~g~R~s---~~~a~l~~a~~~~~~~i~~~~~V~~i~~~~  239 (546)
T 2jbv_A          171 LDACEQAGIPR-A--KFNT-----GTTVVNGANFFQINRRADGTRSS---SSVSYIHPIVEQENFTLLTGLRARQLVFDA  239 (546)
T ss_dssp             HHHHHHTTCCB-C--CSSS-----SSCCSSEEEECEECBCTTSBBCC---HHHHHTGGGTTCTTEEEECSCEEEEEEECT
T ss_pred             HHHHHHCCCCc-c--CCCC-----CCcCcceEEeeeeecCCCCeEcC---HHHHHHHHHhcCCCcEEEeCCEEEEEEECC
Confidence            77777788732 2  2111     000011111221     111111   122233333 35799999999999999876


Q ss_pred             -CeE-EEEc-CC--C--cEEEcC-EEEEcCCcC-hHHHHHhcCCC
Q psy7710         235 -ESV-TIST-KQ--G--DHLESS-YALVCAGLQ-ADEMALKSGCS  270 (473)
Q Consensus       235 -~~v-~v~~-~~--g--~~i~ad-~VV~aaG~~-s~~l~~~~g~~  270 (473)
                       +++ .|+. .+  |  .+++|+ .||+|+|++ +++|+..+|+.
T Consensus       240 ~~~~~GV~~~~~~~g~~~~i~A~k~VIlaaG~~~sp~lL~~SGiG  284 (546)
T 2jbv_A          240 DRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIG  284 (546)
T ss_dssp             TSBEEEEEEESSTTSCEEEEEEEEEEEECSHHHHHHHHHHHTTEE
T ss_pred             CCeEEEEEEEECCCCcEEEEEeCccEEEecCccCCchhhhhcCCC
Confidence             433 3443 22  4  368898 899999996 88898877753

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=99.05  E-value=6.4e-10  Score=112.84  Aligned_cols=55  Identities=20%  Similarity=0.325  Sum_probs=43.4

Q ss_pred             HcCcEEEeCceEEEEEEcCCeEE---EEcCCC-cEEEcCEEEEcCCcC-hHHHHHhcCCC
Q psy7710         216 ELGGEIRLNQQVESFKENPESVT---ISTKQG-DHLESSYALVCAGLQ-ADEMALKSGCS  270 (473)
Q Consensus       216 ~~Gv~i~~~~~V~~i~~~~~~v~---v~~~~g-~~i~ad~VV~aaG~~-s~~l~~~~g~~  270 (473)
                      +.+++|++++.|.++..++++++   +...++ ..+.|+.||+|+|+. |++|+..+|+.
T Consensus       223 r~nl~v~~~~~v~~i~~~~~~a~gv~~~~~~~~~~~~a~~VILsAGai~SP~LLl~SGig  282 (526)
T 3t37_A          223 RKNLTILTGSRVRRLKLEGNQVRSLEVVGRQGSAEVFADQIVLCAGALESPALLMRSGIG  282 (526)
T ss_dssp             CTTEEEECSCEEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECSHHHHHHHHHHHTTEE
T ss_pred             CCCeEEEeCCEEEEEEecCCeEEEEEEEecCceEEEeecceEEcccccCCcchhhhccCC
Confidence            46899999999999998886543   333443 467889999999998 89999887654

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=99.05  E-value=1.2e-09  Score=110.64  Aligned_cols=72  Identities=14%  Similarity=0.167  Sum_probs=57.8

Q ss_pred             ccceeHHHHHHHHHHHHHH-cCcEEEeCceEEEEEEcCCe--EEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710         198 TGIVDWGLVTRVMGEEFCE-LGGEIRLNQQVESFKENPES--VTISTKQGDHLESSYALVCAGLQADEMALKSGCS  270 (473)
Q Consensus       198 ~~~~~~~~~~~~l~~~~~~-~Gv~i~~~~~V~~i~~~~~~--v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~  270 (473)
                      ...+++..+.+.|.+.+++ .|++++++ +|+++..++++  +.|++.+|.+++||.||.|+|.+|..+.+.+|++
T Consensus       169 ~~~~~r~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~~~~~~lg~~  243 (526)
T 2pyx_A          169 GYHLNAAKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSLLLGEHLQVP  243 (526)
T ss_dssp             EEEECHHHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCCCCCCCTCCC
T ss_pred             eEEEcHHHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchHHHHHHhCCC
Confidence            3457889999999999998 89999999 59999876433  4677777667999999999999985445556653

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=99.04  E-value=2.7e-09  Score=107.08  Aligned_cols=69  Identities=17%  Similarity=0.344  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCC---C--cEEEcCEEEEcCCcCh-HH-H-HHhcCCCC
Q psy7710         203 WGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQ---G--DHLESSYALVCAGLQA-DE-M-ALKSGCSL  271 (473)
Q Consensus       203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~---g--~~i~ad~VV~aaG~~s-~~-l-~~~~g~~~  271 (473)
                      +..+.+.+.+.+++.|++++++++|+++..+++++.+...+   |  .++.+|.||+|+|... .. | ++.+|+..
T Consensus       238 d~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~  314 (491)
T 3urh_A          238 DGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVL  314 (491)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCB
T ss_pred             CHHHHHHHHHHHHhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceE
Confidence            45678888899999999999999999999887776655431   4  5799999999999873 23 2 56666654

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=99.03  E-value=8.4e-10  Score=108.82  Aligned_cols=57  Identities=16%  Similarity=0.228  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEE-EEcCCCcEEEcCEEEEcCCcChH
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQAD  261 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~~~~g~~i~ad~VV~aaG~~s~  261 (473)
                      ..+.+.|.+.+++.|++|+++++|++|..+++++. |++ +|.+++||.||+|+|.++.
T Consensus       234 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~-~g~~~~ad~VV~a~~~~~~  291 (433)
T 1d5t_A          234 GELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKS-EGEVARCKQLICDPSYVPD  291 (433)
T ss_dssp             THHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEE-TTEEEECSEEEECGGGCGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEE-CCeEEECCEEEECCCCCcc
Confidence            57899999999999999999999999998877765 554 5668999999999999974

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=99.03  E-value=3.2e-09  Score=105.30  Aligned_cols=68  Identities=13%  Similarity=0.228  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCC-eEEEEcCCCcEEEcCEEEEcCCcChH-H-H-HHhcCCCC
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPE-SVTISTKQGDHLESSYALVCAGLQAD-E-M-ALKSGCSL  271 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~v~v~~~~g~~i~ad~VV~aaG~~s~-~-l-~~~~g~~~  271 (473)
                      ..+.+.+.+.+++.|++++++++|+++..+++ .+.|++.+|.++++|.||+|+|.... . | ++.+|++.
T Consensus       208 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~  279 (450)
T 1ges_A          208 PMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKT  279 (450)
T ss_dssp             HHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTTSCHHHHTCCB
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCCCCCCchhcCceE
Confidence            45778888899999999999999999987654 37788888878999999999998743 2 4 56667654

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=99.03  E-value=9.7e-10  Score=104.66  Aligned_cols=113  Identities=19%  Similarity=0.258  Sum_probs=80.1

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK  135 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (473)
                      ..+||+|||||++|+++|+.|++.  |.+|+|+|+. .+|+.....+.      .                         
T Consensus        13 ~~~~vvIIG~G~aGl~aA~~l~~~--g~~v~lie~~-~~gg~~~~~~~------~-------------------------   58 (335)
T 2a87_A           13 PVRDVIVIGSGPAGYTAALYAARA--QLAPLVFEGT-SFGGALMTTTD------V-------------------------   58 (335)
T ss_dssp             CCEEEEEECCHHHHHHHHHHHHHT--TCCCEEECCS-SCSCGGGSCSC------B-------------------------
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC--CCeEEEEecC-CCCCceeccch------h-------------------------
Confidence            568999999999999999999999  9999999986 45432111000      0                         


Q ss_pred             cCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHH
Q psy7710         136 RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC  215 (473)
Q Consensus       136 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  215 (473)
                                                     ...               |.+          ...+....+...+.+.++
T Consensus        59 -------------------------------~~~---------------~~~----------~~~~~~~~~~~~l~~~~~   82 (335)
T 2a87_A           59 -------------------------------ENY---------------PGF----------RNGITGPELMDEMREQAL   82 (335)
T ss_dssp             -------------------------------CCS---------------TTC----------TTCBCHHHHHHHHHHHHH
T ss_pred             -------------------------------hhc---------------CCC----------CCCCCHHHHHHHHHHHHH
Confidence                                           000               000          001233456666777788


Q ss_pred             HcCcEEEeCceEEEEEEcCCeEEE-EcCCCcEEEcCEEEEcCCcCh
Q psy7710         216 ELGGEIRLNQQVESFKENPESVTI-STKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       216 ~~Gv~i~~~~~V~~i~~~~~~v~v-~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      +.|+++++++ |.++.. ++.+.| .+.+|.++++|.||+|+|..+
T Consensus        83 ~~~v~~~~~~-v~~i~~-~~~~~v~~~~~g~~~~~d~lviAtG~~~  126 (335)
T 2a87_A           83 RFGADLRMED-VESVSL-HGPLKSVVTADGQTHRARAVILAMGAAA  126 (335)
T ss_dssp             HTTCEEECCC-EEEEEC-SSSSEEEEETTSCEEEEEEEEECCCEEE
T ss_pred             HcCCEEEEee-EEEEEe-CCcEEEEEeCCCCEEEeCEEEECCCCCc
Confidence            8899999887 888877 555666 777777899999999999864

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.02  E-value=8.3e-10  Score=109.84  Aligned_cols=61  Identities=18%  Similarity=0.263  Sum_probs=48.7

Q ss_pred             ceeHHHHHHHHHHHHHHcCcE--EEeCceEEEEEEcCC--eEEEEcCC---C--cEEEcCEEEEcCCcCh
Q psy7710         200 IVDWGLVTRVMGEEFCELGGE--IRLNQQVESFKENPE--SVTISTKQ---G--DHLESSYALVCAGLQA  260 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~~Gv~--i~~~~~V~~i~~~~~--~v~v~~~~---g--~~i~ad~VV~aaG~~s  260 (473)
                      ......+.+.+.+.+++.|++  ++++++|+++..+++  .|.|++.+   |  .++.+|.||+|+|.++
T Consensus        97 ~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAtG~~s  166 (464)
T 2xve_A           97 YPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFS  166 (464)
T ss_dssp             SCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECCCSSS
T ss_pred             CCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECCCCCC
Confidence            345567788888888888998  999999999997765  67776543   3  4789999999999875

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=99.02  E-value=3.5e-09  Score=105.21  Aligned_cols=43  Identities=26%  Similarity=0.418  Sum_probs=38.5

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG  100 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~  100 (473)
                      .++||+|||||++|+++|++|+++  |.+|+|+|+.+.+|+.+..
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~~--g~~v~v~E~~~~~GG~~~~   46 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRKA--GLSVAVIEARDRVGGRTWT   46 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCTTCCE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC--CCcEEEEECCCCCCCceec
Confidence            357999999999999999999999  9999999999888877543

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=99.01  E-value=9.4e-10  Score=103.96  Aligned_cols=56  Identities=13%  Similarity=0.195  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         203 WGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      +..+...+.+.+++.|+++++++ |+.+..+++.+.+ +.++.++.+|.||+|+|..+
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~-v~~i~~~~~~~~v-~~~~~~~~~~~lv~AtG~~~  116 (320)
T 1trb_A           61 GPLLMERMHEHATKFETEIIFDH-INKVDLQNRPFRL-NGDNGEYTCDALIIATGASA  116 (320)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECCC-EEEEECSSSSEEE-EESSCEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHHHHCCCEEEEee-eeEEEecCCEEEE-EeCCCEEEcCEEEECCCCCc
Confidence            34566667777888899999886 8899877777777 55566899999999999864

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=99.00  E-value=3.6e-09  Score=105.52  Aligned_cols=67  Identities=16%  Similarity=0.210  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChH-H-H-HHhcCCC
Q psy7710         203 WGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD-E-M-ALKSGCS  270 (473)
Q Consensus       203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~-~-l-~~~~g~~  270 (473)
                      +..+.+.+.+.++++|++++++++|+++..+++.+.|+++++ ++++|.||+|+|.+.. . + ++.+|+.
T Consensus       215 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~~-~i~aD~Vv~a~G~~p~~~~l~l~~~gl~  284 (467)
T 1zk7_A          215 DPAIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTTHG-ELRADKLLVATGRTPNTRSLALDAAGVT  284 (467)
T ss_dssp             CHHHHHHHHHHHHHTTCEEETTCCEEEEEEETTEEEEEETTE-EEEESEEEECSCEEESCTTSCGGGGTCC
T ss_pred             CHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEECCc-EEEcCEEEECCCCCcCCCcCCchhcCCc
Confidence            456888899999999999999999999998777777877754 8999999999999853 2 1 3455554

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=99.00  E-value=1.2e-09  Score=109.12  Aligned_cols=69  Identities=16%  Similarity=0.230  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCe-EEEE-----cCCCcEEEcCEEEEcCCcChH-HH--HHhcCCCC
Q psy7710         203 WGLVTRVMGEEFCELGGEIRLNQQVESFKENPES-VTIS-----TKQGDHLESSYALVCAGLQAD-EM--ALKSGCSL  271 (473)
Q Consensus       203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-v~v~-----~~~g~~i~ad~VV~aaG~~s~-~l--~~~~g~~~  271 (473)
                      +..+...+.+.+++.|++++++++|+++..++++ +.++     +.++.++++|.||+|+|...+ .+  ++.+|++.
T Consensus       219 ~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~  296 (474)
T 1zmd_A          219 DMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIEL  296 (474)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCC
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCcc
Confidence            3567788889999999999999999999987655 6665     355668999999999998743 33  56677654

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.00  E-value=2.9e-09  Score=104.91  Aligned_cols=44  Identities=16%  Similarity=0.271  Sum_probs=39.6

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCC-CeEEEEeccCcccCcccCC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPK-MKICLVEKEKELGMHQTGH  101 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G-~~V~viE~~~~~g~~~s~~  101 (473)
                      .++||+|||||++|+++|++|+++  | .+|+|+|+.+.+||.+...
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~--g~~~v~v~E~~~~~GG~~~t~   49 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQA--GFHDYTILERTDHVGGKCHSP   49 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHT--TCCCEEEECSSSCSSTTCCCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhC--CCCcEEEEECCCCCCCccccc
Confidence            568999999999999999999999  8 8999999998898876553

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=99.00  E-value=1.7e-09  Score=101.70  Aligned_cols=58  Identities=14%  Similarity=0.087  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHHcCcEEEeCceEEEEEEcC---CeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         203 WGLVTRVMGEEFCELGGEIRLNQQVESFKENP---ESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~---~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      +..+...+.+.+++.|++++++++|+.+..+.   +.+.|.+.+|.++++|.||+|+|.++
T Consensus        55 ~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~  115 (310)
T 1fl2_A           55 GQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKW  115 (310)
T ss_dssp             HHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCc
Confidence            34566677788888899999999999997653   36788888887899999999999864

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.00  E-value=8.3e-09  Score=105.57  Aligned_cols=66  Identities=14%  Similarity=0.336  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEE-------------------cCCeEEEEcCCCcEEEcCEEEEcCCcCh-HHHHH
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKE-------------------NPESVTISTKQGDHLESSYALVCAGLQA-DEMAL  265 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~-------------------~~~~v~v~~~~g~~i~ad~VV~aaG~~s-~~l~~  265 (473)
                      +...+.+.+++.|+++++++.|+++..                   +++++.+.+.+|.+++||.||+|+|... ..+++
T Consensus       194 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~  273 (565)
T 3ntd_A          194 MAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLAR  273 (565)
T ss_dssp             HHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEECCHHHH
T ss_pred             HHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCccchHHHH
Confidence            344567778889999999999999987                   4567777777887899999999999984 36778


Q ss_pred             hcCCCC
Q psy7710         266 KSGCSL  271 (473)
Q Consensus       266 ~~g~~~  271 (473)
                      .+|+..
T Consensus       274 ~~g~~~  279 (565)
T 3ntd_A          274 DAGLAI  279 (565)
T ss_dssp             HHTCCB
T ss_pred             hCCccc
Confidence            778764

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.99  E-value=4.9e-09  Score=105.09  Aligned_cols=68  Identities=12%  Similarity=0.243  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCC-eEEEEcCCCcEEEcCEEEEcCCcChHH--H-HHhcCCCC
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPE-SVTISTKQGDHLESSYALVCAGLQADE--M-ALKSGCSL  271 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~v~v~~~~g~~i~ad~VV~aaG~~s~~--l-~~~~g~~~  271 (473)
                      ..+...+.+.+++.|++|+++++|+++..+++ .+.|++.+|.++++|.||+|+|...+.  | ++.+|+..
T Consensus       231 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~  302 (490)
T 1fec_A          231 SELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEV  302 (490)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTTSCGGGGTCCB
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCccccCchhcCccC
Confidence            56788889999999999999999999988654 477888888789999999999988432  4 56666654

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=98.97  E-value=4.3e-09  Score=105.70  Aligned_cols=54  Identities=19%  Similarity=0.296  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCC---cEEEcCEEEEcCCcC
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQG---DHLESSYALVCAGLQ  259 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g---~~i~ad~VV~aaG~~  259 (473)
                      ..+.+.|.+.+.+  .+|+++++|++|..++++|.|++.+|   .+++||+||+|++..
T Consensus       239 ~~l~~~l~~~l~~--~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~~~~ad~vI~a~p~~  295 (489)
T 2jae_A          239 DRIYYAFQDRIGT--DNIVFGAEVTSMKNVSEGVTVEYTAGGSKKSITADYAICTIPPH  295 (489)
T ss_dssp             THHHHHHHHHHCG--GGEETTCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCHH
T ss_pred             HHHHHHHHHhcCC--CeEEECCEEEEEEEcCCeEEEEEecCCeEEEEECCEEEECCCHH
Confidence            4566777666532  78999999999999888998887765   579999999999865

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.96  E-value=2.5e-09  Score=106.63  Aligned_cols=56  Identities=9%  Similarity=0.054  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEc---CCe--EEEEcCCCc----EEEcCEEEEcCCcC
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKEN---PES--VTISTKQGD----HLESSYALVCAGLQ  259 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~---~~~--v~v~~~~g~----~i~ad~VV~aaG~~  259 (473)
                      ..+...+...+++.|++++++++|++|..+   ++.  +.|++.+|.    ++++|.||+|+|..
T Consensus       127 ~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG~~  191 (463)
T 3s5w_A          127 MEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGGT  191 (463)
T ss_dssp             HHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCCCE
T ss_pred             HHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCCCC
Confidence            456666777777789999999999999876   443  367666654    79999999999973

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.95  E-value=2.3e-09  Score=100.96  Aligned_cols=111  Identities=23%  Similarity=0.266  Sum_probs=78.8

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEE-EeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICL-VEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFD  134 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~v-iE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (473)
                      .++||+|||||++|+++|+.|+++  |.+|+| +|+. .+|+.......      .                        
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~--g~~v~li~e~~-~~gG~~~~~~~------~------------------------   49 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRG--GLKNVVMFEKG-MPGGQITSSSE------I------------------------   49 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHH--TCSCEEEECSS-STTGGGGGCSC------B------------------------
T ss_pred             CCceEEEECCCHHHHHHHHHHHHC--CCCeEEEEeCC-CCCceeeeece------e------------------------
Confidence            468999999999999999999999  899999 9995 55432211000      0                        


Q ss_pred             hcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHH
Q psy7710         135 KRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEF  214 (473)
Q Consensus       135 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  214 (473)
                                                      ..++..                         ...+.+..+...+.+.+
T Consensus        50 --------------------------------~~~~~~-------------------------~~~~~~~~~~~~~~~~~   72 (315)
T 3r9u_A           50 --------------------------------ENYPGV-------------------------AQVMDGISFMAPWSEQC   72 (315)
T ss_dssp             --------------------------------CCSTTC-------------------------CSCBCHHHHHHHHHHHH
T ss_pred             --------------------------------ccCCCC-------------------------CCCCCHHHHHHHHHHHH
Confidence                                            000000                         00233456777788888


Q ss_pred             HHcCcEEEeCceEEEEEEcC--CeEEE-EcCCCcEEEcCEEEEcCCcC
Q psy7710         215 CELGGEIRLNQQVESFKENP--ESVTI-STKQGDHLESSYALVCAGLQ  259 (473)
Q Consensus       215 ~~~Gv~i~~~~~V~~i~~~~--~~v~v-~~~~g~~i~ad~VV~aaG~~  259 (473)
                      ++.|++++++ +|.++ .++  +.+.+ ...++ ++.+|+||+|+|..
T Consensus        73 ~~~~v~~~~~-~v~~i-~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~~  117 (315)
T 3r9u_A           73 MRFGLKHEMV-GVEQI-LKNSDGSFTIKLEGGK-TELAKAVIVCTGSA  117 (315)
T ss_dssp             TTTCCEEECC-CEEEE-EECTTSCEEEEETTSC-EEEEEEEEECCCEE
T ss_pred             HHcCcEEEEE-EEEEE-ecCCCCcEEEEEecCC-EEEeCEEEEeeCCC
Confidence            8899999988 88899 766  67774 23344 89999999999974

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.94  E-value=2.7e-09  Score=107.82  Aligned_cols=43  Identities=26%  Similarity=0.415  Sum_probs=39.1

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCC-CeEEEEeccCcccCcccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPK-MKICLVEKEKELGMHQTG  100 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G-~~V~viE~~~~~g~~~s~  100 (473)
                      ..+||+|||||++||++|+.|+++  | .+|+|+|+.+++||....
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~--G~~~V~VlEa~~riGGr~~t   50 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQN--GIQDCLVLEARDRVGGRLQT   50 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHT--TCCSEEEECSSSSSBTTCCE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhc--CCCCEEEEeCCCCCCCceee
Confidence            457999999999999999999999  8 999999999899988644

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.94  E-value=4.1e-09  Score=99.24  Aligned_cols=39  Identities=21%  Similarity=0.394  Sum_probs=35.1

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMH   97 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~   97 (473)
                      .+|||+|||||++|+++|++|++.  |++|+|||++ .+|+.
T Consensus         5 ~~yDvvIIG~GpAGl~aA~~l~~~--g~~V~liE~~-~~gG~   43 (312)
T 4gcm_A            5 IDFDIAIIGAGPAGMTAAVYASRA--NLKTVMIERG-IPGGQ   43 (312)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESS-CTTGG
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHC--CCCEEEEecC-CCCCe
Confidence            469999999999999999999999  9999999997 56543

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=98.93  E-value=2.4e-09  Score=108.29  Aligned_cols=60  Identities=15%  Similarity=0.132  Sum_probs=44.0

Q ss_pred             HHHHHHcCcEEEeCceEEEEEEcCC---eE-EEEc--CCCc--EE---EcCEEEEcCCcC-hHHHHHhcCCC
Q psy7710         211 GEEFCELGGEIRLNQQVESFKENPE---SV-TIST--KQGD--HL---ESSYALVCAGLQ-ADEMALKSGCS  270 (473)
Q Consensus       211 ~~~~~~~Gv~i~~~~~V~~i~~~~~---~v-~v~~--~~g~--~i---~ad~VV~aaG~~-s~~l~~~~g~~  270 (473)
                      .+.+++.|++|++++.|++|..+++   .+ .|+.  .+|.  ++   .++.||+|+|++ +++|+..+|+.
T Consensus       201 ~~~~~~~~~~v~~~~~v~~i~~~~~~~~~~~GV~~~~~~g~~~~~~v~a~k~VILaaGa~~sp~lL~~SGig  272 (536)
T 1ju2_A          201 LNKGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVG  272 (536)
T ss_dssp             GGGSCTTTEEEEESCEEEEEEECCSSSCBEEEEEEECTTSCEEEEEEEEEEEEEECCHHHHHHHHHHHTTEE
T ss_pred             hhhhcCCCcEEEeCCEEEEEEECCCCCCEEEEEEEEeCCCceEEEEeccCCEEEEcCcccCCHHHHHHcCCC
Confidence            3345678999999999999998753   33 3443  3453  34   468999999998 88888887763

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.92  E-value=5.6e-09  Score=105.38  Aligned_cols=58  Identities=10%  Similarity=0.102  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHHcCcEEEeCceEEEEEEc---CCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         203 WGLVTRVMGEEFCELGGEIRLNQQVESFKEN---PESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~---~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      +..+...+.+.+++.|++++.+++|+.+..+   ++.+.|++.+|.++++|.||+|+|.+.
T Consensus       266 ~~~l~~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~  326 (521)
T 1hyu_A          266 GQKLAGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKW  326 (521)
T ss_dssp             HHHHHHHHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCc
Confidence            3456677888888899999999999999754   236788888887899999999999864

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.91  E-value=2.3e-08  Score=100.70  Aligned_cols=56  Identities=7%  Similarity=-0.034  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcC
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ  259 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~  259 (473)
                      ..+...+.+.+++.|+++++++.|.++...++.+.|.+.++..+.+|.|++|+|-.
T Consensus       263 ~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~  318 (542)
T 4b1b_A          263 QQCAVKVKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRK  318 (542)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEE
T ss_pred             hhHHHHHHHHHHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEccccc
Confidence            46788899999999999999999999999999999988887789999999999976

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.91  E-value=5.3e-09  Score=104.91  Aligned_cols=68  Identities=16%  Similarity=0.235  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCC-eEEEEcCCCcEEEcCEEEEcCCcChH-H-H-HHhcCCCC
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPE-SVTISTKQGDHLESSYALVCAGLQAD-E-M-ALKSGCSL  271 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~v~v~~~~g~~i~ad~VV~aaG~~s~-~-l-~~~~g~~~  271 (473)
                      ..+...+.+.++++|++++++++|+++..+++ .+.|++.+|.++++|.||+|+|...+ . | ++.+|+..
T Consensus       235 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~  306 (495)
T 2wpf_A          235 ETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKL  306 (495)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECCGGGTGGGTTCCB
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCcccccccchhhcCccC
Confidence            46778888999999999999999999987653 47788888878999999999998742 2 4 56666654

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.90  E-value=5.6e-08  Score=99.82  Aligned_cols=64  Identities=19%  Similarity=0.348  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh-HHHHHhcCCCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA-DEMALKSGCSL  271 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s-~~l~~~~g~~~  271 (473)
                      +...+.+.+++.|++++++++|+++..+++.  |.+.+|.++.+|.||+|+|... ..+++.+|++.
T Consensus       230 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~--v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~g~~~  294 (588)
T 3ics_A          230 MAAYVHEHMKNHDVELVFEDGVDALEENGAV--VRLKSGSVIQTDMLILAIGVQPESSLAKGAGLAL  294 (588)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEGGGTE--EEETTSCEEECSEEEECSCEEECCHHHHHTTCCB
T ss_pred             HHHHHHHHHHHcCCEEEECCeEEEEecCCCE--EEECCCCEEEcCEEEEccCCCCChHHHHhcCceE
Confidence            4455777788899999999999999876554  5556777899999999999883 46788888764

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.90  E-value=6.4e-08  Score=95.98  Aligned_cols=54  Identities=7%  Similarity=0.183  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      +.+.+.+.+++.|++++++++|+++..+++++.|+++++ +++||.||+|+|...
T Consensus       191 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g-~i~aD~Vv~A~G~~p  244 (452)
T 3oc4_A          191 MVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQ-EISCDSGIFALNLHP  244 (452)
T ss_dssp             HHHHHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESSC-EEEESEEEECSCCBC
T ss_pred             HHHHHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECCC-EEEeCEEEECcCCCC
Confidence            455577788889999999999999997777778888887 999999999999873

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.90  E-value=1.3e-08  Score=102.07  Aligned_cols=67  Identities=19%  Similarity=0.149  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcC--CC--cEEEcCEEEEcCCcCh-HHH--HHhcCCCC
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTK--QG--DHLESSYALVCAGLQA-DEM--ALKSGCSL  271 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~--~g--~~i~ad~VV~aaG~~s-~~l--~~~~g~~~  271 (473)
                      ..+.+.+.+.+++. ++++++++|+++..+++++.+++.  +|  .++.+|.||+|+|... ..+  ++.+|++.
T Consensus       215 ~~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~  288 (492)
T 3ic9_A          215 EEMKRYAEKTFNEE-FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIEL  288 (492)
T ss_dssp             HHHHHHHHHHHHTT-SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCB
T ss_pred             HHHHHHHHHHHhhC-cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccCCCCCChhhcCCEE
Confidence            56777888888877 999999999999988777776653  56  5799999999999873 233  45566554

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=98.89  E-value=8.1e-09  Score=105.50  Aligned_cols=58  Identities=16%  Similarity=0.071  Sum_probs=42.7

Q ss_pred             HHHHcCcEEEeCceEEEEEEcC----CeE-EEEc--CCC--cEEEc-CEEEEcCCcC-hHHHHHhcCCC
Q psy7710         213 EFCELGGEIRLNQQVESFKENP----ESV-TIST--KQG--DHLES-SYALVCAGLQ-ADEMALKSGCS  270 (473)
Q Consensus       213 ~~~~~Gv~i~~~~~V~~i~~~~----~~v-~v~~--~~g--~~i~a-d~VV~aaG~~-s~~l~~~~g~~  270 (473)
                      .+++.|++|++++.|++|..++    +.+ .|+.  .+|  .+++| +.||+|+|+. +++|+..+||.
T Consensus       240 ~~~~~nl~i~~~~~v~~l~~~~~~~~~~~~GV~~~~~~g~~~~v~A~k~VILaaG~~~sp~lL~~SGIG  308 (587)
T 1gpe_A          240 NYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIG  308 (587)
T ss_dssp             TTTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTEE
T ss_pred             hhcCCCcEEEcCCEEEEEEECCCCCCCEEEEEEEEeCCCcEEEEEecccEEEccCCCCCHHHHHhCCCC
Confidence            3456799999999999998753    222 2432  345  35788 8899999997 88888887764

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.89  E-value=1.5e-08  Score=101.40  Aligned_cols=69  Identities=19%  Similarity=0.139  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCe--EEEEcCC-------CcEEEcCEEEEcCCcChH-H-H-HHhcCCC
Q psy7710         203 WGLVTRVMGEEFCELGGEIRLNQQVESFKENPES--VTISTKQ-------GDHLESSYALVCAGLQAD-E-M-ALKSGCS  270 (473)
Q Consensus       203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~--v~v~~~~-------g~~i~ad~VV~aaG~~s~-~-l-~~~~g~~  270 (473)
                      ...+.+.+.+.+++.|++++++++|+++..++++  +.+.+.+       |.++.+|.||+|+|...+ . | ++.+|++
T Consensus       227 d~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~  306 (478)
T 3dk9_A          227 DSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQ  306 (478)
T ss_dssp             CHHHHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCC
T ss_pred             CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCe
Confidence            3567788888999999999999999999876544  5666654       257899999999998632 2 3 5666665


Q ss_pred             C
Q psy7710         271 L  271 (473)
Q Consensus       271 ~  271 (473)
                      .
T Consensus       307 ~  307 (478)
T 3dk9_A          307 T  307 (478)
T ss_dssp             B
T ss_pred             e
Confidence            3

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.88  E-value=1.3e-08  Score=101.29  Aligned_cols=40  Identities=35%  Similarity=0.489  Sum_probs=35.4

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMH   97 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~   97 (473)
                      .++||+|||||++|+++|+.|++.  |.+|+|||+.+.+|+.
T Consensus         3 ~~~DVvVIGgG~aGl~aA~~l~~~--G~~V~liEk~~~~GG~   42 (466)
T 3l8k_A            3 LKYDVVVIGAGGAGYHGAFRLAKA--KYNVLMADPKGELGGN   42 (466)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECTTSSSSHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHhC--CCeEEEEECCCCCCCc
Confidence            358999999999999999999999  9999999977666643

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.87  E-value=1.9e-08  Score=100.65  Aligned_cols=38  Identities=34%  Similarity=0.462  Sum_probs=34.4

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      .++||+|||||++|+++|+.|++.  |.+|+|||+.+.+|
T Consensus         4 ~~~dVvIIGgG~aGl~aA~~l~~~--G~~V~liE~~~~~G   41 (478)
T 1v59_A            4 KSHDVVIIGGGPAGYVAAIKAAQL--GFNTACVEKRGKLG   41 (478)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCCcC
Confidence            458999999999999999999999  89999999965554

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=98.87  E-value=1.2e-08  Score=103.67  Aligned_cols=61  Identities=15%  Similarity=0.200  Sum_probs=45.8

Q ss_pred             HHHHHHH-cCcEEEeCceEEEEEEcCCeE-EEEcCC---Cc--EE---EcCEEEEcCCcC-hHHHHHhcCCC
Q psy7710         210 MGEEFCE-LGGEIRLNQQVESFKENPESV-TISTKQ---GD--HL---ESSYALVCAGLQ-ADEMALKSGCS  270 (473)
Q Consensus       210 l~~~~~~-~Gv~i~~~~~V~~i~~~~~~v-~v~~~~---g~--~i---~ad~VV~aaG~~-s~~l~~~~g~~  270 (473)
                      +.+.+.+ .|++|++++.|++|..+++++ .|+..+   |.  ++   .+|.||+|+|++ +++|+..+|+.
T Consensus       201 ~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~sp~lL~~sGig  272 (546)
T 1kdg_A          201 YLQTALARPNFTFKTNVMVSNVVRNGSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIG  272 (546)
T ss_dssp             HHHHHHTCTTEEEECSCCEEEEEEETTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHHHTTBS
T ss_pred             HHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcCHHHHHHcCCC
Confidence            4444444 599999999999999876644 355433   53  33   789999999998 78899888875

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.85  E-value=3.5e-08  Score=98.45  Aligned_cols=40  Identities=33%  Similarity=0.380  Sum_probs=35.8

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMH   97 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~   97 (473)
                      .++||+|||||++|+++|+.|++.  |.+|+|||+.+.+|+.
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~--g~~V~liE~~~~~GG~   44 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQL--GFKTTCIEKRGALGGT   44 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSSSCCS
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCCcccc
Confidence            468999999999999999999999  8999999998666543

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.85  E-value=2.1e-08  Score=100.42  Aligned_cols=38  Identities=45%  Similarity=0.629  Sum_probs=34.4

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      .++||+|||||++|+++|+.|++.  |.+|+|||+.+.+|
T Consensus         5 ~~~dVvIIGaG~aGl~aA~~l~~~--G~~V~liE~~~~~G   42 (482)
T 1ojt_A            5 AEYDVVVLGGGPGGYSAAFAAADE--GLKVAIVERYKTLG   42 (482)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSCSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCCCCC
Confidence            468999999999999999999999  99999999965655

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=98.84  E-value=2e-09  Score=108.26  Aligned_cols=59  Identities=17%  Similarity=0.285  Sum_probs=44.2

Q ss_pred             HHHHHHHcC-cEEEeCceEEEEEEcC-C-e-EEEEc--CCC-----cEEEcCEEEEcCCcC-hHHHHHhcC
Q psy7710         210 MGEEFCELG-GEIRLNQQVESFKENP-E-S-VTIST--KQG-----DHLESSYALVCAGLQ-ADEMALKSG  268 (473)
Q Consensus       210 l~~~~~~~G-v~i~~~~~V~~i~~~~-~-~-v~v~~--~~g-----~~i~ad~VV~aaG~~-s~~l~~~~g  268 (473)
                      +.+.++++| ++|++++.|++|..++ + . +.|+.  .+|     .+++|+.||+|+|++ ++.|+..+|
T Consensus       227 ~l~~a~~~~n~~i~~~~~V~~i~~~~~g~~~~gV~~~~~~g~~~~~~~v~A~~VIlaaG~~~s~~lL~~Sg  297 (504)
T 1n4w_A          227 YLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLVRAR  297 (504)
T ss_dssp             HHHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCccceeEEEeeCEEEEccCCCCCHHHHHhcc
Confidence            334455564 9999999999999874 2 3 33544  355     368899999999998 888888777

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=98.84  E-value=3e-08  Score=99.01  Aligned_cols=56  Identities=23%  Similarity=0.389  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHc--------CcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcC
Q psy7710         204 GLVTRVMGEEFCEL--------GGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ  259 (473)
Q Consensus       204 ~~~~~~l~~~~~~~--------Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~  259 (473)
                      ..+.+.|.+.+.+.        |++|+++++|++|..+++++.|++.+|.+++||+||+|++.+
T Consensus       206 ~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~  269 (472)
T 1b37_A          206 EAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLG  269 (472)
T ss_dssp             THHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCHH
T ss_pred             HHHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCCcEEEEECCCCEEEcCEEEEecCHH
Confidence            35667777666554        789999999999999888899999998889999999999875

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=98.84  E-value=1e-08  Score=102.51  Aligned_cols=43  Identities=21%  Similarity=0.210  Sum_probs=38.9

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCC-CeEEEEeccCcccCcccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPK-MKICLVEKEKELGMHQTG  100 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G-~~V~viE~~~~~g~~~s~  100 (473)
                      ..+||+|||||++|+++|++|+++  | .+|+|+|+.+.+||....
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~--g~~~v~v~E~~~~~GG~~~~   51 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTEL--GYKNWHLYECNDTPGGLSRS   51 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHT--TCCSEEEEESSSSSSGGGCE
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHc--CCCCEEEEeCCCCCCCeeee
Confidence            568999999999999999999999  7 799999999888877655

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.84  E-value=6.3e-08  Score=95.95  Aligned_cols=64  Identities=16%  Similarity=0.304  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcC-hHHHHHhcCCCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ-ADEMALKSGCSL  271 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~-s~~l~~~~g~~~  271 (473)
                      +...+.+.+++. +++++++.|.++..++....+.+ ++.++++|.||+|+|.. ...+++.+|++.
T Consensus       192 ~~~~l~~~l~~~-v~i~~~~~v~~i~~~~~v~~v~~-~g~~i~~D~Vv~a~G~~p~~~l~~~~gl~~  256 (449)
T 3kd9_A          192 VTDILEEKLKKH-VNLRLQEITMKIEGEERVEKVVT-DAGEYKAELVILATGIKPNIELAKQLGVRI  256 (449)
T ss_dssp             HHHHHHHHHTTT-SEEEESCCEEEEECSSSCCEEEE-TTEEEECSEEEECSCEEECCHHHHHTTCCB
T ss_pred             HHHHHHHHHHhC-cEEEeCCeEEEEeccCcEEEEEe-CCCEEECCEEEEeeCCccCHHHHHhCCccC
Confidence            445566777778 99999999999986653223444 44589999999999998 447888888765

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.82  E-value=7.6e-09  Score=102.68  Aligned_cols=48  Identities=10%  Similarity=0.171  Sum_probs=38.8

Q ss_pred             HHHHcCcEEEeCceEEEEEEcCCeEEEE-cCCCcEEEcCEEEEcCCcCh
Q psy7710         213 EFCELGGEIRLNQQVESFKENPESVTIS-TKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       213 ~~~~~Gv~i~~~~~V~~i~~~~~~v~v~-~~~g~~i~ad~VV~aaG~~s  260 (473)
                      .+++.|++++++++|+++..+++.+.++ ..++.++++|.+|+|+|...
T Consensus        67 ~~~~~gi~~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p  115 (452)
T 3oc4_A           67 ELRRQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQ  115 (452)
T ss_dssp             HHHHTTEEEECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCCCB
T ss_pred             HHHHCCCEEEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCccc
Confidence            3456799999999999999888888775 23446799999999999853

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.81  E-value=1.9e-08  Score=100.62  Aligned_cols=39  Identities=31%  Similarity=0.348  Sum_probs=35.0

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGM   96 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~   96 (473)
                      .++||+|||||++|+++|++|++.  |.+|+|||+++.+|+
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~--G~~V~liEk~~~~gG   40 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQL--GLKTALIEKYKGKEG   40 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHH--TCCEEEEECCBCTTS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhC--CCEEEEEeCCCccCC
Confidence            468999999999999999999999  999999999865543

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.81  E-value=6.7e-08  Score=96.34  Aligned_cols=39  Identities=41%  Similarity=0.500  Sum_probs=35.0

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMH   97 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~   97 (473)
                      ++||+|||||++|+++|++|++.  |.+|+|||+.+.+|+.
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~--g~~V~lie~~~~~GG~   40 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQL--GMKTACVEKRGALGGT   40 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSSSHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCCcCCc
Confidence            48999999999999999999999  9999999998666543

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.80  E-value=1e-07  Score=96.17  Aligned_cols=37  Identities=27%  Similarity=0.471  Sum_probs=33.6

Q ss_pred             CCCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          54 SPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        54 ~~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      +..++||+|||||++|+++|..|++.  |.+|+|||+.+
T Consensus        29 ~~~~~DVvVIGgGpaGl~aA~~la~~--G~~V~liEk~~   65 (519)
T 3qfa_A           29 KSYDYDLIIIGGGSGGLAAAKEAAQY--GKKVMVLDFVT   65 (519)
T ss_dssp             SSCSEEEEEECCSHHHHHHHHHHHHT--TCCEEEECCCC
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhC--CCeEEEEeccC
Confidence            34579999999999999999999999  99999999963

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.80  E-value=2.4e-07  Score=92.51  Aligned_cols=55  Identities=18%  Similarity=0.211  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCC--C-cEEEcCEEEEcCCcCh
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQ--G-DHLESSYALVCAGLQA  260 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~--g-~~i~ad~VV~aaG~~s  260 (473)
                      +.+.+.+.+++.|++++++++|+++..+++.+.+...+  | .++.+|.||+|+|...
T Consensus       223 ~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p  280 (476)
T 3lad_A          223 VAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRP  280 (476)
T ss_dssp             HHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcc
Confidence            44557777888999999999999999887776665543  3 5789999999999863

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.78  E-value=5.7e-08  Score=96.74  Aligned_cols=52  Identities=6%  Similarity=-0.017  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCC--cEEEcCEEEEcCCcCh
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQG--DHLESSYALVCAGLQA  260 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g--~~i~ad~VV~aaG~~s  260 (473)
                      +...+.+.+++.|++++.++.+.   .+.+.+.|.+.+|  .++++|.||+|+|..+
T Consensus        93 l~~~l~~~~~~~gv~~~~g~~~~---id~~~v~V~~~~G~~~~~~~d~lViAtG~~~  146 (464)
T 2a8x_A           93 RVAGVHFLMKKNKITEIHGYGTF---ADANTLLVDLNDGGTESVTFDNAIIATGSST  146 (464)
T ss_dssp             HHHHHHHHHHHTTCEEECEEEEE---SSSSEEEEEETTSCCEEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHHHhCCCEEEEeEEEE---ecCCeEEEEeCCCceEEEEcCEEEECCCCCC
Confidence            44556677778899999887653   3556788888777  6899999999999875

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.77  E-value=1.2e-08  Score=98.83  Aligned_cols=46  Identities=11%  Similarity=0.191  Sum_probs=37.8

Q ss_pred             HHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcC
Q psy7710         212 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ  259 (473)
Q Consensus       212 ~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~  259 (473)
                      +.+++.|++++++++|++|+.+++.  |++.+|.++.+|++|+|||..
T Consensus        70 ~~~~~~~i~~~~~~~V~~id~~~~~--v~~~~g~~~~yd~lvlAtG~~  115 (385)
T 3klj_A           70 DWYEKNNIKVITSEFATSIDPNNKL--VTLKSGEKIKYEKLIIASGSI  115 (385)
T ss_dssp             HHHHHTTCEEECSCCEEEEETTTTE--EEETTSCEEECSEEEECCCEE
T ss_pred             HHHHHCCCEEEeCCEEEEEECCCCE--EEECCCCEEECCEEEEecCCC
Confidence            3445679999999999999877654  566777789999999999974

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.77  E-value=1.1e-08  Score=106.93  Aligned_cols=61  Identities=15%  Similarity=0.149  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEE---cCCCcEEEcCEEEEcCCcC-hHHHHHh
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTIS---TKQGDHLESSYALVCAGLQ-ADEMALK  266 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~---~~~g~~i~ad~VV~aaG~~-s~~l~~~  266 (473)
                      ..+...+.+.++++|++|+++++|++|..++  +.++   +.++.++.||.||+|+|.. ...+...
T Consensus       567 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~--~~v~~~~~~~~~~i~aD~VV~A~G~~p~~~l~~~  631 (690)
T 3k30_A          567 TFEVNRIQRRLIENGVARVTDHAVVAVGAGG--VTVRDTYASIERELECDAVVMVTARLPREELYLD  631 (690)
T ss_dssp             GTCHHHHHHHHHHTTCEEEESEEEEEEETTE--EEEEETTTCCEEEEECSEEEEESCEEECCHHHHH
T ss_pred             chhHHHHHHHHHHCCCEEEcCcEEEEEECCe--EEEEEccCCeEEEEECCEEEECCCCCCChHHHHH
Confidence            4456678888899999999999999997543  4443   3455679999999999987 3355543

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.77  E-value=9.9e-08  Score=95.49  Aligned_cols=34  Identities=35%  Similarity=0.608  Sum_probs=31.8

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .++||+|||||++|+++|++|++.  |.+|+|||+.
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~--G~~V~liEk~   41 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLN--GARVACLDFV   41 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHT--TCCEEEECCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC--CCEEEEEEec
Confidence            579999999999999999999999  9999999963

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.76  E-value=9.9e-08  Score=94.05  Aligned_cols=61  Identities=16%  Similarity=0.215  Sum_probs=47.0

Q ss_pred             HHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh-HHHHHhcCCCCC
Q psy7710         208 RVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA-DEMALKSGCSLE  272 (473)
Q Consensus       208 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s-~~l~~~~g~~~~  272 (473)
                      +.+.+.++++|++++++++|+++..  +  .+.+.+|+++++|.||+|+|... ..+++.+|+..+
T Consensus       192 ~~~~~~l~~~gV~i~~~~~v~~~~~--~--~v~~~~g~~~~~D~vl~a~G~~Pn~~~~~~~gl~~~  253 (437)
T 4eqs_A          192 QPILDELDKREIPYRLNEEINAING--N--EITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLD  253 (437)
T ss_dssp             HHHHHHHHHTTCCEEESCCEEEEET--T--EEEETTSCEEECSEEEECCCEEESCGGGTTSSCCCC
T ss_pred             HHHHHHhhccceEEEeccEEEEecC--C--eeeecCCeEEeeeeEEEEeceecCcHHHHhhhhhhc
Confidence            3466778889999999999988753  2  25667788999999999999873 357777777643

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.76  E-value=6.8e-08  Score=95.91  Aligned_cols=38  Identities=42%  Similarity=0.588  Sum_probs=34.2

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGM   96 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~   96 (473)
                      ++||+|||||++|+++|.+|++.  |.+|+|||+++.+|+
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~~~~GG   38 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQL--GMKVGVVEKEKALGG   38 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSSSH
T ss_pred             CCCEEEECCChhHHHHHHHHHHC--CCeEEEEeCCCCCCC
Confidence            37999999999999999999999  899999999865653

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.74  E-value=9.1e-08  Score=94.98  Aligned_cols=52  Identities=12%  Similarity=0.077  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCC-cEEEcCEEEEcCCcCh
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQG-DHLESSYALVCAGLQA  260 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g-~~i~ad~VV~aaG~~s  260 (473)
                      +...+.+.+++.|++++.++.+. +  +.+.+.|++.+| .++++|+||+|+|...
T Consensus        93 l~~~~~~~~~~~gv~~~~g~~~~-i--d~~~v~V~~~~G~~~i~~d~lViATGs~p  145 (455)
T 1ebd_A           93 LTGGVEGLLKGNKVEIVKGEAYF-V--DANTVRVVNGDSAQTYTFKNAIIATGSRP  145 (455)
T ss_dssp             HHHHHHHHHHTTTCEEEESEEEE-E--ETTEEEEEETTEEEEEECSEEEECCCEEE
T ss_pred             HHHHHHHHHHhCCCEEEEEEEEE-c--cCCeEEEEeCCCcEEEEeCEEEEecCCCC
Confidence            44456667778899999888653 3  456788888777 6799999999999864

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.74  E-value=5.5e-08  Score=96.60  Aligned_cols=65  Identities=25%  Similarity=0.305  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChH-HH--HHhcCCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD-EM--ALKSGCS  270 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~-~l--~~~~g~~  270 (473)
                      +.+.+.+.+++.|++++++++|+++..+++++.+++.+|.++++|.||+|+|..+. .+  ++.+|+.
T Consensus       210 ~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~  277 (455)
T 2yqu_A          210 VSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLS  277 (455)
T ss_dssp             HHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCTTCCGGGGTCC
T ss_pred             HHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCCCCCChhhcCCc
Confidence            34446677788899999999999999887788888777778999999999999853 22  4555554

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=98.74  E-value=1e-08  Score=102.99  Aligned_cols=59  Identities=14%  Similarity=0.125  Sum_probs=43.9

Q ss_pred             HHHHHHHc-CcEEEeCceEEEEEEcC-C-e-EEEEc--CCC-----cEEEcCEEEEcCCcC-hHHHHHhcC
Q psy7710         210 MGEEFCEL-GGEIRLNQQVESFKENP-E-S-VTIST--KQG-----DHLESSYALVCAGLQ-ADEMALKSG  268 (473)
Q Consensus       210 l~~~~~~~-Gv~i~~~~~V~~i~~~~-~-~-v~v~~--~~g-----~~i~ad~VV~aaG~~-s~~l~~~~g  268 (473)
                      +...++++ +++|++++.|++|..++ + . +.|+.  .+|     .+++|+.||+|+|++ ++.|+..+|
T Consensus       232 ~l~~a~~~~n~~i~~~~~v~~i~~~~~g~~~~gV~~~~~~g~~~~~~~~~A~~VIlaaGa~~sp~lL~~Sg  302 (507)
T 1coy_A          232 YLAQAAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLLVSMK  302 (507)
T ss_dssp             HHHHHHHTTCEEEECSEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEEEeCCCCcccccEEEEeCEEEEccCccCCHHHHHhcc
Confidence            33444445 59999999999999875 3 2 33544  245     368899999999999 888888877

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=98.74  E-value=2.1e-07  Score=93.52  Aligned_cols=42  Identities=24%  Similarity=0.343  Sum_probs=38.2

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQT   99 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s   99 (473)
                      ..+||+|||||++|+++|+.|+++  |.+|+|+|+.+.+|+...
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~--g~~v~vlE~~~~~gg~~~   73 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGA--GHQVTVLEASERPGGRVR   73 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHH--TCEEEEECSSSSSBTTCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC--CCeEEEEECCCCCCCcee
Confidence            467999999999999999999999  999999999988887653

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.73  E-value=8.7e-09  Score=101.10  Aligned_cols=46  Identities=17%  Similarity=0.245  Sum_probs=36.9

Q ss_pred             HHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcC
Q psy7710         212 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ  259 (473)
Q Consensus       212 ~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~  259 (473)
                      +.+.+.|++++.+++|+.+..++.  .|.+.+|..+.+|.+|+|+|..
T Consensus        73 ~~~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~~d~lvlAtG~~  118 (415)
T 3lxd_A           73 QFWEDKAVEMKLGAEVVSLDPAAH--TVKLGDGSAIEYGKLIWATGGD  118 (415)
T ss_dssp             HHHHHTTEEEEETCCEEEEETTTT--EEEETTSCEEEEEEEEECCCEE
T ss_pred             HHHHHCCcEEEeCCEEEEEECCCC--EEEECCCCEEEeeEEEEccCCc
Confidence            344567999999999999987655  3556677789999999999964

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.73  E-value=1.1e-07  Score=95.45  Aligned_cols=39  Identities=21%  Similarity=0.445  Sum_probs=34.4

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCC-CCeEEEEeccCcccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYP-KMKICLVEKEKELGM   96 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~-G~~V~viE~~~~~g~   96 (473)
                      ++||+|||||++|+++|++|++..| |.+|+|||+++ +|+
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG   41 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGG   41 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCC
Confidence            4799999999999999999999865 78999999985 553

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.71  E-value=8.1e-08  Score=95.97  Aligned_cols=37  Identities=46%  Similarity=0.632  Sum_probs=34.0

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      .++||+|||||++|+++|+.|++.  |.+|+|||++ .+|
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~--g~~V~liE~~-~~G   46 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASY--GAKTLLVEAK-ALG   46 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT--SCCEEEEESS-CTT
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHC--CCcEEEEeCC-CcC
Confidence            468999999999999999999999  9999999997 554

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.70  E-value=6.1e-08  Score=96.06  Aligned_cols=38  Identities=29%  Similarity=0.501  Sum_probs=34.0

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL   94 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~   94 (473)
                      ++||+|||||++|+++|+.|++.+++.+|+|||+.+.+
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~   40 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWV   40 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCcc
Confidence            47899999999999999999998778899999998543

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.69  E-value=2.4e-07  Score=92.85  Aligned_cols=34  Identities=29%  Similarity=0.491  Sum_probs=32.0

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .++||+|||||++|+++|..|++.  |.+|+|||+.
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~--G~~V~liEk~   38 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQL--GKKVAVADYV   38 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC--CCeEEEEEec
Confidence            569999999999999999999999  9999999984

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.68  E-value=2e-08  Score=98.96  Aligned_cols=47  Identities=11%  Similarity=0.220  Sum_probs=37.5

Q ss_pred             HHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         212 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       212 ~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      +.+++.|++++++++|+.+..++.  .|++.+|.++.+|.||+|+|...
T Consensus        68 ~~~~~~gv~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~p  114 (431)
T 1q1r_A           68 DAYAAQNIQLLGGTQVTAINRDRQ--QVILSDGRALDYDRLVLATGGRP  114 (431)
T ss_dssp             HHHHHTTEEEECSCCEEEEETTTT--EEEETTSCEEECSEEEECCCEEE
T ss_pred             HHHHhCCCEEEeCCEEEEEECCCC--EEEECCCCEEECCEEEEcCCCCc
Confidence            344567999999999999987655  35556777899999999999864

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.67  E-value=1.3e-08  Score=98.66  Aligned_cols=51  Identities=12%  Similarity=0.139  Sum_probs=42.1

Q ss_pred             ceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChH
Q psy7710         200 IVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD  261 (473)
Q Consensus       200 ~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~  261 (473)
                      .++...+.+.|.+.+++.|++++++++|+++...           .+++||.||.|+|.+|.
T Consensus        94 ~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-----------~~~~ad~vV~AdG~~S~  144 (381)
T 3c4a_A           94 GVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL-----------PLADYDLVVLANGVNHK  144 (381)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC-----------CGGGCSEEEECCGGGGG
T ss_pred             eecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc-----------ccccCCEEEECCCCCch
Confidence            3566788999999999999999999999887531           13578999999999985

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.67  E-value=3.4e-07  Score=90.97  Aligned_cols=37  Identities=30%  Similarity=0.593  Sum_probs=34.0

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      .++||+|||||++|+++|.+|++.  |.+|+|||++ .+|
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~~--g~~V~liE~~-~~G   39 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAAF--GKRVALIESK-ALG   39 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESS-CTT
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhC--CCcEEEEcCC-CCC
Confidence            468999999999999999999998  9999999998 555

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.67  E-value=2.4e-07  Score=91.22  Aligned_cols=66  Identities=24%  Similarity=0.344  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEE--cCCeE-EEEcCCCcEEEcCEEEEcCCcCh-HHHHHhcCCCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKE--NPESV-TISTKQGDHLESSYALVCAGLQA-DEMALKSGCSL  271 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~--~~~~v-~v~~~~g~~i~ad~VV~aaG~~s-~~l~~~~g~~~  271 (473)
                      +...+.+.+++.|++++++++|+++..  +++.+ .|++.+|.++.+|.||+|+|... ..+++.+|+..
T Consensus       193 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~~l~~~~gl~~  262 (431)
T 1q1r_A          193 VSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQV  262 (431)
T ss_dssp             HHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEEECCHHHHHTTCCB
T ss_pred             HHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCCcCcchhhccCCCC
Confidence            344566777888999999999999987  54544 68888888899999999999873 46888888764

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.66  E-value=4.2e-08  Score=96.89  Aligned_cols=48  Identities=15%  Similarity=0.275  Sum_probs=37.8

Q ss_pred             HHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         210 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       210 l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      +.+.+++.|++++ ..+|+.++.+++  .|++.+|.++.+|+||+|+|...
T Consensus        65 l~~~~~~~gv~~~-~~~v~~id~~~~--~V~~~~g~~i~~d~lviAtG~~~  112 (437)
T 3sx6_A           65 IRHYVERKGIHFI-AQSAEQIDAEAQ--NITLADGNTVHYDYLMIATGPKL  112 (437)
T ss_dssp             CHHHHHTTTCEEE-CSCEEEEETTTT--EEEETTSCEEECSEEEECCCCEE
T ss_pred             HHHHHHHCCCEEE-EeEEEEEEcCCC--EEEECCCCEEECCEEEECCCCCc
Confidence            4555667899997 568999987665  45667777899999999999864

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.66  E-value=1.5e-08  Score=93.39  Aligned_cols=41  Identities=22%  Similarity=0.442  Sum_probs=37.4

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCccc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQT   99 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s   99 (473)
                      ++||+|||||++||++|+.|+++  |++|+||||.+.+|+..+
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~--G~~V~v~Ek~~~~GG~~~   42 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAA--GHQVHLFDKSRGSGGRMS   42 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCGGGC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCCCCCCccc
Confidence            47999999999999999999999  999999999988876654

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.65  E-value=1.5e-07  Score=93.61  Aligned_cols=64  Identities=14%  Similarity=0.237  Sum_probs=51.5

Q ss_pred             HHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCc-EEEcCEEEEcCCcChHH--H-HHhcCCCC
Q psy7710         208 RVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGD-HLESSYALVCAGLQADE--M-ALKSGCSL  271 (473)
Q Consensus       208 ~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~-~i~ad~VV~aaG~~s~~--l-~~~~g~~~  271 (473)
                      ..+.+.+++.|++++++++|+++..+++++.|++.+|. ++.+|.||+|+|...+.  | ++.+|++.
T Consensus       211 ~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~  278 (463)
T 2r9z_A          211 ATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEV  278 (463)
T ss_dssp             HHHHHHHHHTTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESCTTSCHHHHTCCC
T ss_pred             HHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCCCCCCchhcCCcc
Confidence            44667778899999999999999987667888888887 79999999999987432  4 56666654

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.65  E-value=1.9e-07  Score=95.91  Aligned_cols=50  Identities=12%  Similarity=0.214  Sum_probs=39.8

Q ss_pred             HHHHHHHcCcEEEeCceEEEEEEcCCeEEEEc-CCCc--EEEcCEEEEcCCcC
Q psy7710         210 MGEEFCELGGEIRLNQQVESFKENPESVTIST-KQGD--HLESSYALVCAGLQ  259 (473)
Q Consensus       210 l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~-~~g~--~i~ad~VV~aaG~~  259 (473)
                      +...+++.|++++++++|+++..+++.+.+.. .+|.  .+.+|.||+|+|..
T Consensus        99 ~~~~~~~~gi~v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~  151 (588)
T 3ics_A           99 VERMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAK  151 (588)
T ss_dssp             HHHHHHHTTCEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred             HHHHHHhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCC
Confidence            33445567999999999999998888888765 3454  68899999999974

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.63  E-value=2.8e-08  Score=97.27  Aligned_cols=50  Identities=22%  Similarity=0.303  Sum_probs=37.3

Q ss_pred             HHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCC--cEEEcCEEEEcCCcCh
Q psy7710         210 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQG--DHLESSYALVCAGLQA  260 (473)
Q Consensus       210 l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g--~~i~ad~VV~aaG~~s  260 (473)
                      +.+.+++.|++++.+ +|+++..++..+.+...++  .++++|.||+|+|...
T Consensus        62 ~~~~~~~~gv~~~~~-~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~  113 (409)
T 3h8l_A           62 LSEALPEKGIQFQEG-TVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHL  113 (409)
T ss_dssp             HHHHTGGGTCEEEEC-EEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEE
T ss_pred             HHHHHhhCCeEEEEe-eEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCc
Confidence            455566779999877 8999987777666654432  2489999999999853

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.63  E-value=1.1e-07  Score=94.27  Aligned_cols=48  Identities=13%  Similarity=0.218  Sum_probs=37.9

Q ss_pred             HHHHcCcEEEeCceEEEEEEcCCeEEEEc-CCCc--EEEcCEEEEcCCcCh
Q psy7710         213 EFCELGGEIRLNQQVESFKENPESVTIST-KQGD--HLESSYALVCAGLQA  260 (473)
Q Consensus       213 ~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~-~~g~--~i~ad~VV~aaG~~s  260 (473)
                      .+++.|++++.++.|..+..+++.+.+.+ .+|.  ++++|++|+|+|...
T Consensus        65 ~~~~~gv~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p  115 (447)
T 1nhp_A           65 KMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVP  115 (447)
T ss_dssp             HHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred             HHHHCCCEEEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCc
Confidence            34567999999999999987777777765 3453  489999999999763

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.63  E-value=3.3e-07  Score=89.52  Aligned_cols=62  Identities=16%  Similarity=0.303  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh-HHHHHhcCCCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA-DEMALKSGCSL  271 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s-~~l~~~~g~~~  271 (473)
                      +...+.+.+++.|++++++++|+++. ++   .|++.+|.+++||.||+|+|... ..+++.+|++.
T Consensus       189 ~~~~l~~~l~~~GV~i~~~~~v~~i~-~~---~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~gl~~  251 (408)
T 2gqw_A          189 LADFVARYHAAQGVDLRFERSVTGSV-DG---VVLLDDGTRIAADMVVVGIGVLANDALARAAGLAC  251 (408)
T ss_dssp             HHHHHHHHHHHTTCEEEESCCEEEEE-TT---EEEETTSCEEECSEEEECSCEEECCHHHHHHTCCB
T ss_pred             HHHHHHHHHHHcCcEEEeCCEEEEEE-CC---EEEECCCCEEEcCEEEECcCCCccHHHHHhCCCCC
Confidence            44456777888999999999999998 43   56667787899999999999884 46888888764

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.63  E-value=1.3e-07  Score=95.05  Aligned_cols=66  Identities=24%  Similarity=0.306  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChH-HH--HHhcCCCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQAD-EM--ALKSGCSL  271 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~-~l--~~~~g~~~  271 (473)
                      +...+.+.+++.|++|+++++|+++..+++++.|++.+|.++++|.||+|+|...+ .+  ++.+|++.
T Consensus       225 ~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~  293 (499)
T 1xdi_A          225 AALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQL  293 (499)
T ss_dssp             HHHHHHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCSSSCTTTTTCCC
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCCCcCCchhcCceE
Confidence            44557778888999999999999999877778888888878999999999999853 34  45556553

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.62  E-value=9.1e-08  Score=95.62  Aligned_cols=45  Identities=16%  Similarity=0.302  Sum_probs=37.0

Q ss_pred             HcCcEEEeCceEEEEEEcCCeEEEEc-CCCc--EEEcCEEEEcCCcCh
Q psy7710         216 ELGGEIRLNQQVESFKENPESVTIST-KQGD--HLESSYALVCAGLQA  260 (473)
Q Consensus       216 ~~Gv~i~~~~~V~~i~~~~~~v~v~~-~~g~--~i~ad~VV~aaG~~s  260 (473)
                      +.|++++++++|+.+..+++.+.+.+ .+|.  ++++|.||+|+|...
T Consensus       105 ~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p  152 (480)
T 3cgb_A          105 KYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRP  152 (480)
T ss_dssp             TTCCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred             hcCCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcc
Confidence            45999999999999988777787776 4564  689999999999753

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.61  E-value=9.3e-08  Score=94.84  Aligned_cols=49  Identities=14%  Similarity=0.333  Sum_probs=38.2

Q ss_pred             HHHHHcCcEEEeCceEEEEEEcCCeEEEEcC-C--CcEEEcCEEEEcCCcCh
Q psy7710         212 EEFCELGGEIRLNQQVESFKENPESVTISTK-Q--GDHLESSYALVCAGLQA  260 (473)
Q Consensus       212 ~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~-~--g~~i~ad~VV~aaG~~s  260 (473)
                      +.+++.|++++.+++|..+..+++.+.+.+. +  +.++++|.+|+|+|...
T Consensus        66 ~~~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p  117 (452)
T 2cdu_A           66 EELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKP  117 (452)
T ss_dssp             HHHHHTTCEEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred             HHHHHcCCEEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCc
Confidence            3445679999999999999877777777652 2  35799999999999753

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.60  E-value=4.6e-08  Score=94.15  Aligned_cols=32  Identities=31%  Similarity=0.525  Sum_probs=30.2

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .||+|||||++|+++|..|++.  | +|+|||+++
T Consensus         9 ~~vvIIGgG~AGl~aA~~l~~~--g-~V~lie~~~   40 (367)
T 1xhc_A            9 SKVVIVGNGPGGFELAKQLSQT--Y-EVTVIDKEP   40 (367)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTT--S-EEEEECSSS
T ss_pred             CcEEEECCcHHHHHHHHHHhhc--C-CEEEEECCC
Confidence            5899999999999999999998  8 999999984

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.60  E-value=2.2e-07  Score=94.91  Aligned_cols=46  Identities=17%  Similarity=0.247  Sum_probs=37.3

Q ss_pred             HHHcCcEEEeCceEEEEEEcCCeEEEEc-CCC--cEEEcCEEEEcCCcC
Q psy7710         214 FCELGGEIRLNQQVESFKENPESVTIST-KQG--DHLESSYALVCAGLQ  259 (473)
Q Consensus       214 ~~~~Gv~i~~~~~V~~i~~~~~~v~v~~-~~g--~~i~ad~VV~aaG~~  259 (473)
                      .++.|++++++++|+++..+++.+.+.. .+|  .++.+|+||+|+|..
T Consensus        68 ~~~~~i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~  116 (565)
T 3ntd_A           68 KARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAA  116 (565)
T ss_dssp             HHHHCCEEETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred             HHhcCcEEEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCC
Confidence            3446999999999999998888887765 233  378999999999984

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.58  E-value=2.2e-07  Score=92.85  Aligned_cols=66  Identities=12%  Similarity=0.219  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCe--EEEEcCCC-cEEEcCEEEEcCCcChH-HH-HHhcCCCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPES--VTISTKQG-DHLESSYALVCAGLQAD-EM-ALKSGCSL  271 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~--v~v~~~~g-~~i~ad~VV~aaG~~s~-~l-~~~~g~~~  271 (473)
                      +.+.+.+.+++.|++++++++|+++..++++  +.|++.+| .++.+|.||+|+|...+ .| ++.+|++.
T Consensus       228 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~l~l~~~gl~~  298 (479)
T 2hqm_A          228 IQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKL  298 (479)
T ss_dssp             HHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECCCSSGGGGTCCB
T ss_pred             HHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCccccChhhcCceE
Confidence            3445677788889999999999999876544  67888888 78999999999998643 45 56666654

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.58  E-value=1.8e-07  Score=90.43  Aligned_cols=53  Identities=19%  Similarity=0.275  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh-HHHHHhcCCCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA-DEMALKSGCSL  271 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s-~~l~~~~g~~~  271 (473)
                      +...+.+.+++.|+++++++.|+++             |.++.+|.||+|+|... ..+++.+|+..
T Consensus       190 ~~~~~~~~l~~~gV~~~~~~~v~~i-------------g~~~~~D~vv~a~G~~p~~~~~~~~gl~~  243 (385)
T 3klj_A          190 GGLFLKDKLDRLGIKIYTNSNFEEM-------------GDLIRSSCVITAVGVKPNLDFIKDTEIAS  243 (385)
T ss_dssp             HHHHHHHHHHTTTCEEECSCCGGGC-------------HHHHHHSEEEECCCEEECCGGGTTSCCCB
T ss_pred             HHHHHHHHHHhCCCEEEeCCEEEEc-------------CeEEecCeEEECcCcccChhhhhhcCCCc
Confidence            3444667778889999999998776             45788999999999874 36777777653

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.57  E-value=9.8e-08  Score=95.66  Aligned_cols=48  Identities=19%  Similarity=0.262  Sum_probs=38.1

Q ss_pred             HHHHcCcEEEeCceEEEEEEcCCeEEEE-cCCCcEEEcCEEEEcCCcCh
Q psy7710         213 EFCELGGEIRLNQQVESFKENPESVTIS-TKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       213 ~~~~~Gv~i~~~~~V~~i~~~~~~v~v~-~~~g~~i~ad~VV~aaG~~s  260 (473)
                      .+++.|++++.+++|..+..+++.+.+. ..++.++++|+||+|+|...
T Consensus       101 ~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~g~~~~~~~d~lviAtG~~p  149 (490)
T 2bc0_A          101 ELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQP  149 (490)
T ss_dssp             HHHHTTCEEETTCCEEEEETTTTEEEEEETTEEEEEECSEEEECCCEEE
T ss_pred             HHHhCCCEEEeCCEEEEEECCCCEEEEEeCCcEEEEECCEEEECCCCCc
Confidence            3456799999999999998777777776 43345799999999999753

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.57  E-value=3.9e-06  Score=84.85  Aligned_cols=46  Identities=11%  Similarity=0.136  Sum_probs=37.8

Q ss_pred             HHHHHHHcCcEEEe--CceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         210 MGEEFCELGGEIRL--NQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       210 l~~~~~~~Gv~i~~--~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      +.+.+.+.+|+++.  ++.|++|..++    |.+.+| ++++|.||+|||..+
T Consensus       344 y~~al~~~nV~lv~~~~~~I~~it~~g----v~~~dG-~~~~D~IV~ATGf~~  391 (545)
T 3uox_A          344 YYETYNRDNVHLVDIREAPIQEVTPEG----IKTADA-AYDLDVIIYATGFDA  391 (545)
T ss_dssp             HHHHTTSTTEEEEETTTSCEEEEETTE----EEESSC-EEECSEEEECCCCBS
T ss_pred             HHHHhcCCCEEEEecCCCCceEEccCe----EEeCCC-eeecCEEEECCcccc
Confidence            56677778999986  78899886543    678899 999999999999874

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.57  E-value=4.9e-08  Score=96.15  Aligned_cols=34  Identities=44%  Similarity=0.736  Sum_probs=31.3

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      +|+|||||++|+++|.+|++.+++.+|+|||+.+
T Consensus         4 ~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~   37 (430)
T 3hyw_A            4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRP   37 (430)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSS
T ss_pred             cEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCC
Confidence            6999999999999999999986678999999985

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.56  E-value=4.8e-07  Score=89.92  Aligned_cols=66  Identities=14%  Similarity=0.285  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcC-C--Cc--EEEcCEEEEcCCcChH-HH--HHhcCCCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTK-Q--GD--HLESSYALVCAGLQAD-EM--ALKSGCSL  271 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~-~--g~--~i~ad~VV~aaG~~s~-~l--~~~~g~~~  271 (473)
                      +.+.+.+.+++.|++++++++|+++..+++++.|++. +  |.  ++.+|.||+|+|.... .+  ++.+|+..
T Consensus       212 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~  285 (464)
T 2eq6_A          212 TAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKV  285 (464)
T ss_dssp             HHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCB
T ss_pred             HHHHHHHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCcee
Confidence            3444677788899999999999999987777776654 5  65  7999999999998742 22  45666553

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.56  E-value=2.4e-07  Score=92.61  Aligned_cols=66  Identities=17%  Similarity=0.197  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCC----CcEEEcCEEEEcCCcCh-HHH--HHhcCCCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQ----GDHLESSYALVCAGLQA-DEM--ALKSGCSL  271 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~----g~~i~ad~VV~aaG~~s-~~l--~~~~g~~~  271 (473)
                      +.+.+.+.+++.|++++++++|+++..+++++.|++.+    |.++.+|.||+|+|... ..+  ++.+|++.
T Consensus       228 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~  300 (482)
T 1ojt_A          228 LVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAV  300 (482)
T ss_dssp             HHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEECGGGTTGGGTTCCC
T ss_pred             HHHHHHHHHHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCCCCCChhhcCcee
Confidence            34456777888999999999999999877776666654    66789999999999874 334  56677654

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.56  E-value=3.7e-07  Score=91.45  Aligned_cols=67  Identities=21%  Similarity=0.282  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh-HHHHHhcCCCCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA-DEMALKSGCSLE  272 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s-~~l~~~~g~~~~  272 (473)
                      +...+.+.++++|++++++++|+++..+++.+.|++.+|.++.||.||+|+|... ..+++.+|++.+
T Consensus       228 ~~~~~~~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~  295 (493)
T 1m6i_A          228 LSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEID  295 (493)
T ss_dssp             HHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCTTHHHHTCCBC
T ss_pred             HHHHHHHHHHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCccHHHHHHcCCccc
Confidence            4445677788899999999999999877777788888888999999999999984 457788887643

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.56  E-value=1e-07  Score=93.24  Aligned_cols=44  Identities=18%  Similarity=0.302  Sum_probs=36.2

Q ss_pred             HHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcC
Q psy7710         214 FCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ  259 (473)
Q Consensus       214 ~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~  259 (473)
                      +++.|++++++++|+.+..+..  .|.+.+|.++.+|++|+|+|..
T Consensus        67 ~~~~~i~~~~~~~v~~id~~~~--~v~~~~g~~~~~d~lvlAtG~~  110 (410)
T 3ef6_A           67 YGEARIDMLTGPEVTALDVQTR--TISLDDGTTLSADAIVIATGSR  110 (410)
T ss_dssp             HHHTTCEEEESCCEEEEETTTT--EEEETTSCEEECSEEEECCCEE
T ss_pred             HHHCCCEEEeCCEEEEEECCCC--EEEECCCCEEECCEEEEccCCc
Confidence            3467999999999999987655  4556677789999999999975

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.56  E-value=2e-07  Score=93.11  Aligned_cols=65  Identities=25%  Similarity=0.282  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEE--cCCeEEEEcC-----CCcEEEcCEEEEcCCcChH-H--HHHhcCCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKE--NPESVTISTK-----QGDHLESSYALVCAGLQAD-E--MALKSGCS  270 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~--~~~~v~v~~~-----~g~~i~ad~VV~aaG~~s~-~--l~~~~g~~  270 (473)
                      +...+.+.+++.|++++++++|+++..  +++.+.|++.     ++.++.+|.||+|+|...+ .  +++.+|+.
T Consensus       226 ~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~  300 (478)
T 1v59_A          226 VAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLE  300 (478)
T ss_dssp             HHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTTTTCC
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchhcCce
Confidence            444567778889999999999999987  5666666543     3457999999999998743 2  45555554

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.55  E-value=3.9e-07  Score=91.48  Aligned_cols=36  Identities=47%  Similarity=0.822  Sum_probs=33.0

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      ++||+|||||++|+++|..|++.  |.+|+|||++ .+|
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~--g~~V~liE~~-~~G   37 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARH--NAKVALVEKS-RLG   37 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT--TCCEEEEESS-STT
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC--CCcEEEEeCC-CcC
Confidence            48999999999999999999999  9999999998 444

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.55  E-value=1.6e-07  Score=91.68  Aligned_cols=45  Identities=13%  Similarity=0.187  Sum_probs=35.7

Q ss_pred             HHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcC
Q psy7710         212 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ  259 (473)
Q Consensus       212 ~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~  259 (473)
                      +.+.+.|++++. ++|+++..++..  |.+.+|..+.+|.+|+|+|..
T Consensus        65 ~~~~~~~i~~~~-~~v~~id~~~~~--v~~~~g~~~~~d~lvlAtG~~  109 (404)
T 3fg2_P           65 KFFQDQAIELIS-DRMVSIDREGRK--LLLASGTAIEYGHLVLATGAR  109 (404)
T ss_dssp             HHHHHTTEEEEC-CCEEEEETTTTE--EEESSSCEEECSEEEECCCEE
T ss_pred             HHHHhCCCEEEE-EEEEEEECCCCE--EEECCCCEEECCEEEEeeCCC
Confidence            334567999998 999999876654  556677789999999999974

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.55  E-value=2.4e-07  Score=92.01  Aligned_cols=65  Identities=17%  Similarity=0.334  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcC---CCcEEEcCEEEEcCCcChH-HH--HHhcCCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTK---QGDHLESSYALVCAGLQAD-EM--ALKSGCS  270 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~---~g~~i~ad~VV~aaG~~s~-~l--~~~~g~~  270 (473)
                      +...+.+.+++.|++++++++|+++..+++++.+++.   ++.++++|.||+|+|...+ .+  ++.+|+.
T Consensus       213 ~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~  283 (455)
T 1ebd_A          213 MAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIK  283 (455)
T ss_dssp             HHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEESCSSSSTTTTTCC
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCcccCcCChhhcCCc
Confidence            3444667778899999999999999987766666543   4457999999999998742 33  3444543

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.54  E-value=7.9e-07  Score=88.38  Aligned_cols=36  Identities=31%  Similarity=0.455  Sum_probs=33.2

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      ++||+|||||++|+++|..|++.  |.+|+|||+++ +|
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~--g~~V~lie~~~-~G   41 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQL--GLKVLAVEAGE-VG   41 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSC-TT
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCC-CC
Confidence            58999999999999999999999  89999999984 54

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.54  E-value=1.1e-06  Score=87.11  Aligned_cols=38  Identities=26%  Similarity=0.335  Sum_probs=34.1

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGM   96 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~   96 (473)
                      .++||+|||||++|+++|.+|++.  |.+|+|||++ .+|+
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~--g~~V~lie~~-~~GG   41 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQL--GIPTVLVEGQ-ALGG   41 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHH--TCCEEEECSS-CTTH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC--CCEEEEEccC-CCCC
Confidence            468999999999999999999999  8999999995 5653

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.54  E-value=3.1e-07  Score=91.77  Aligned_cols=65  Identities=20%  Similarity=0.272  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh-HHHHHhcCCCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA-DEMALKSGCSL  271 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s-~~l~~~~g~~~  271 (473)
                      +.+.+.+.+++.|++++++++|+++..+++...+.++++ ++++|.||+|+|... ..+++.+|++.
T Consensus       229 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~v~~v~~~~~-~i~~D~vi~a~G~~p~~~~l~~~g~~~  294 (480)
T 3cgb_A          229 MAEYIYKEADKHHIEILTNENVKAFKGNERVEAVETDKG-TYKADLVLVSVGVKPNTDFLEGTNIRT  294 (480)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEESSBEEEEEETTE-EEECSEEEECSCEEESCGGGTTSCCCB
T ss_pred             HHHHHHHHHHHcCcEEEcCCEEEEEEcCCcEEEEEECCC-EEEcCEEEECcCCCcChHHHHhCCccc
Confidence            444577778889999999999999987654445666655 899999999999884 35666666553

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.52  E-value=2.4e-07  Score=89.73  Aligned_cols=36  Identities=19%  Similarity=0.351  Sum_probs=31.0

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .++||+|||||++|+++|..|++.++..+|+|+|++
T Consensus         3 ~~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~   38 (384)
T 2v3a_A            3 ERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITAD   38 (384)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSS
T ss_pred             CCCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECC
Confidence            358999999999999999999999433679999987

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.52  E-value=8.7e-07  Score=86.35  Aligned_cols=59  Identities=14%  Similarity=0.094  Sum_probs=50.6

Q ss_pred             HHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710         212 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCS  270 (473)
Q Consensus       212 ~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~  270 (473)
                      +.+++.|+++++++++..+..+++...+++.+|+++++|.||+|+|...+.+++.+|+.
T Consensus       210 ~~l~~~gi~v~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vi~~~g~~~~~~~~~~gl~  268 (401)
T 3vrd_B          210 FGTENALIEWHPGPDAAVVKTDTEAMTVETSFGETFKAAVINLIPPQRAGKIAQSASLT  268 (401)
T ss_dssp             TTSTTCSEEEECTTTTCEEEEETTTTEEEETTSCEEECSEEEECCCEEECHHHHHTTCC
T ss_pred             HHHHhcCcEEEeCceEEEEEecccceEEEcCCCcEEEeeEEEEecCcCCchhHhhcccc
Confidence            34467899999999999998887777788999989999999999998877888888764

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.52  E-value=4.2e-07  Score=93.34  Aligned_cols=55  Identities=15%  Similarity=0.129  Sum_probs=41.8

Q ss_pred             cCcEEEeCceEEEEEEcCC--e---EEEEc-CCC--cEEEcCEEEEcCCcC-hHHHHHhcCCCC
Q psy7710         217 LGGEIRLNQQVESFKENPE--S---VTIST-KQG--DHLESSYALVCAGLQ-ADEMALKSGCSL  271 (473)
Q Consensus       217 ~Gv~i~~~~~V~~i~~~~~--~---v~v~~-~~g--~~i~ad~VV~aaG~~-s~~l~~~~g~~~  271 (473)
                      .|++|++++.|++|..+++  .   |.+.. .+|  .+++||.||+|+|.. +.+++...|+..
T Consensus       273 ~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~~sgiG~  336 (623)
T 3pl8_A          273 ERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQ  336 (623)
T ss_dssp             EEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHHTTTSSC
T ss_pred             CCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHHhcCCCc
Confidence            4899999999999998642  2   33332 345  367899999999998 778888887753

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.51  E-value=5.3e-07  Score=89.79  Aligned_cols=66  Identities=17%  Similarity=0.136  Sum_probs=49.1

Q ss_pred             HHHHHHHHH-HHcCcEEEeCceEEEEEEcCCeEEEEcC--CC--cEEEcCEEEEcCCcCh-HHH--HHhcCCCC
Q psy7710         206 VTRVMGEEF-CELGGEIRLNQQVESFKENPESVTISTK--QG--DHLESSYALVCAGLQA-DEM--ALKSGCSL  271 (473)
Q Consensus       206 ~~~~l~~~~-~~~Gv~i~~~~~V~~i~~~~~~v~v~~~--~g--~~i~ad~VV~aaG~~s-~~l--~~~~g~~~  271 (473)
                      +.+.+.+.+ ++.|++++++++|+++..+++++.+++.  +|  .++++|.||+|+|... ..+  ++.+|++.
T Consensus       217 ~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~  290 (468)
T 2qae_A          217 VTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAK  290 (468)
T ss_dssp             HHHHHHHHHHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEECCTTSCHHHHTCCB
T ss_pred             HHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccCCCCCCchhcCCcc
Confidence            344577778 8899999999999999987766666543  55  5799999999999884 344  56667654

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.50  E-value=2.1e-07  Score=93.25  Aligned_cols=54  Identities=9%  Similarity=0.127  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEc-CCCc--EEEcCEEEEcCCcCh
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTIST-KQGD--HLESSYALVCAGLQA  260 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~-~~g~--~i~ad~VV~aaG~~s  260 (473)
                      +...+.+.+ +.|+++++++.|.++..+++.+.+.+ .++.  .+.+|++|+|+|...
T Consensus       163 ~~~~l~~~l-~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~  219 (493)
T 1y56_A          163 VVEELVGKL-NENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAID  219 (493)
T ss_dssp             HHHHHHHTC-CTTEEEETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEE
T ss_pred             HHHHHHHHH-hcCCEEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCc
Confidence            334444444 56899999999999988777665543 3442  689999999999753

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.50  E-value=5.6e-07  Score=90.34  Aligned_cols=65  Identities=17%  Similarity=0.202  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcC-CeEEEEcCCCcE-EEcCEEEEcCCcChHH--H-HHhcCCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENP-ESVTISTKQGDH-LESSYALVCAGLQADE--M-ALKSGCS  270 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~v~v~~~~g~~-i~ad~VV~aaG~~s~~--l-~~~~g~~  270 (473)
                      +...+.+.++++|++++++++|+++..++ +.+.|++.+|.+ +.+|.||+|+|...+.  | ++.+|++
T Consensus       219 ~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~  288 (500)
T 1onf_A          219 VINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVE  288 (500)
T ss_dssp             HHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTTTTSSCTTTTCC
T ss_pred             hHHHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCCCCCCchhcCcc
Confidence            34457777888999999999999998765 347788888866 9999999999987432  4 4555554

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.49  E-value=5.7e-07  Score=89.46  Aligned_cols=66  Identities=27%  Similarity=0.401  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcC-CC--cEEEcCEEEEcCCcCh-HHH--HHhcCCCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTK-QG--DHLESSYALVCAGLQA-DEM--ALKSGCSL  271 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~-~g--~~i~ad~VV~aaG~~s-~~l--~~~~g~~~  271 (473)
                      +...+.+.++++|++++++++|+++..+++++.+++. +|  .++.+|.||+|+|... ..+  ++.+|+..
T Consensus       214 ~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~  285 (464)
T 2a8x_A          214 VSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVAL  285 (464)
T ss_dssp             HHHHHHHHHHHHTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCB
T ss_pred             HHHHHHHHHHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCccCCCCCchhcCCcc
Confidence            3344667778889999999999999887766666643 45  5799999999999874 233  56666653

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.48  E-value=1.5e-07  Score=94.19  Aligned_cols=40  Identities=25%  Similarity=0.517  Sum_probs=35.2

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      ..+||+|||||++|+++|..|++++++.+|+|||+.+.++
T Consensus        10 ~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~   49 (493)
T 1m6i_A           10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP   49 (493)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCC
T ss_pred             CcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            5689999999999999999998876789999999986443

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.46  E-value=5e-07  Score=83.99  Aligned_cols=57  Identities=11%  Similarity=0.188  Sum_probs=43.9

Q ss_pred             HHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcC-hHHHHHhcCCC
Q psy7710         210 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ-ADEMALKSGCS  270 (473)
Q Consensus       210 l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~-s~~l~~~~g~~  270 (473)
                      +.+.+++.|++++. ++|+++..++   .|.+.+|.++.+|.||+|+|.. ...+++.+|++
T Consensus       180 ~~~~l~~~gv~i~~-~~v~~i~~~~---~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~g~~  237 (297)
T 3fbs_A          180 QHALLAARGVRVET-TRIREIAGHA---DVVLADGRSIALAGLFTQPKLRITVDWIEKLGCA  237 (297)
T ss_dssp             HHHHHHHTTCEEEC-SCEEEEETTE---EEEETTSCEEEESEEEECCEEECCCSCHHHHTCC
T ss_pred             HHHHHHHCCcEEEc-ceeeeeecCC---eEEeCCCCEEEEEEEEEccCcccCchhHHhcCCc
Confidence            45566788999985 8999887543   5677788889999999999986 34567777654

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.45  E-value=2.7e-07  Score=90.16  Aligned_cols=44  Identities=18%  Similarity=0.212  Sum_probs=35.4

Q ss_pred             HHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         215 CELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       215 ~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      ++.|++++++++|+.+..++.  .|++.+|.++++|++|+|+|...
T Consensus        70 ~~~~v~~~~~~~v~~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~  113 (408)
T 2gqw_A           70 RAPEVEWLLGVTAQSFDPQAH--TVALSDGRTLPYGTLVLATGAAP  113 (408)
T ss_dssp             TSCSCEEEETCCEEEEETTTT--EEEETTSCEEECSEEEECCCEEE
T ss_pred             HHCCCEEEcCCEEEEEECCCC--EEEECCCCEEECCEEEECCCCCC
Confidence            456899999999999986654  35556677899999999999854

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.43  E-value=9e-08  Score=94.60  Aligned_cols=38  Identities=26%  Similarity=0.459  Sum_probs=34.2

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      ..+||+|||||++|+++|+.|+++  |.+|+|+|+.+.+|
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~--G~~V~v~e~~~~~G  158 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAK--GYEVHVYDRYDRMG  158 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHH--TCCEEEECSSSSCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCCCC
Confidence            457999999999999999999999  89999999986544

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.43  E-value=8.9e-07  Score=85.10  Aligned_cols=61  Identities=20%  Similarity=0.300  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh-HHHHHhcCCCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA-DEMALKSGCSL  271 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s-~~l~~~~g~~~  271 (473)
                      +.+.+.+.++++|++++++++|+++.  .+  .|++.+|. +++|.||+|+|... ..+++.+|++.
T Consensus       185 ~~~~l~~~l~~~gV~i~~~~~v~~i~--~~--~v~~~~g~-i~~D~vi~a~G~~p~~~ll~~~gl~~  246 (367)
T 1xhc_A          185 LSNMIKDMLEETGVKFFLNSELLEAN--EE--GVLTNSGF-IEGKVKICAIGIVPNVDLARRSGIHT  246 (367)
T ss_dssp             HHHHHHHHHHHTTEEEECSCCEEEEC--SS--EEEETTEE-EECSCEEEECCEEECCHHHHHTTCCB
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEEEE--ee--EEEECCCE-EEcCEEEECcCCCcCHHHHHhCCCCC
Confidence            34456777888999999999999987  22  35667775 99999999999874 35888888764

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.42  E-value=1.2e-06  Score=86.60  Aligned_cols=54  Identities=19%  Similarity=0.307  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      +.+.+.+.+++.|++++++++|+++..++..+.+.+++ .++++|.||+|+|...
T Consensus       193 ~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~v~~v~~~~-~~i~~d~vi~a~G~~p  246 (447)
T 1nhp_A          193 FTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDK-NAYDADLVVVAVGVRP  246 (447)
T ss_dssp             HHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEEESS-CEEECSEEEECSCEEE
T ss_pred             HHHHHHHHHHhCCCEEEcCCEEEEEEccCcEEEEEECC-CEEECCEEEECcCCCC
Confidence            44557777888999999999999998764333466644 5899999999999874

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.42  E-value=1.1e-06  Score=82.15  Aligned_cols=61  Identities=10%  Similarity=0.246  Sum_probs=44.4

Q ss_pred             HHHHHHHcCcEEEeCceEEEEEEcCCeE-EEEcCCCcEEEcCEEEEcCCcC-hHHHHHhcCCCC
Q psy7710         210 MGEEFCELGGEIRLNQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQ-ADEMALKSGCSL  271 (473)
Q Consensus       210 l~~~~~~~Gv~i~~~~~V~~i~~~~~~v-~v~~~~g~~i~ad~VV~aaG~~-s~~l~~~~g~~~  271 (473)
                      +.+.+++.|+.++.++ +..+..+++.+ .|++.+|.++.+|.+|+++|.. ...++..+|++.
T Consensus       186 ~~~~l~~~g~~~~~~~-v~~~~~~~~~~~~v~~~~g~~i~~~~~vi~~g~~~~~~~~~~~g~~~  248 (304)
T 4fk1_A          186 IMDELSNKNIPVITES-IRTLQGEGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCEL  248 (304)
T ss_dssp             HHHHHHTTTCCEECSC-EEEEESGGGCCCEEEETTSCEECCCEEEECCEEECSSCHHHHTTCCC
T ss_pred             hhhhhhccceeEeeee-EEEeecCCCeeeeeeccccceeeecceeeeeccccCChhhhhcCeEE
Confidence            4455667788888664 66676555443 4888888889999999988876 446778888765

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.40  E-value=4.9e-07  Score=90.14  Aligned_cols=65  Identities=18%  Similarity=0.269  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcC---CC--cEEEcCEEEEcCCcChH-HH--HHhcCCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTK---QG--DHLESSYALVCAGLQAD-EM--ALKSGCS  270 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~---~g--~~i~ad~VV~aaG~~s~-~l--~~~~g~~  270 (473)
                      +.+.+.+.+++.|++++++++|+++..+++++.+++.   +|  .++.+|.||+|+|...+ .+  ++.+|+.
T Consensus       220 ~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~  292 (470)
T 1dxl_A          220 IRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVE  292 (470)
T ss_dssp             HHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCC
T ss_pred             HHHHHHHHHHHcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCc
Confidence            3445677788899999999999999877655655532   33  57999999999998743 33  4445544

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.39  E-value=2.9e-06  Score=84.04  Aligned_cols=59  Identities=20%  Similarity=0.489  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEE-EEcCCCcEEEcCEEEEcCCcCh-HHHHH
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQA-DEMAL  265 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~~~~g~~i~ad~VV~aaG~~s-~~l~~  265 (473)
                      +...+.+.+++.|++++++++|+++..+++++. +.+ +|.++++|.||+|+|... ..+++
T Consensus       193 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~-~g~~i~~D~vv~a~G~~p~~~ll~  253 (452)
T 2cdu_A          193 FTDILAKDYEAHGVNLVLGSKVAAFEEVDDEIITKTL-DGKEIKSDIAILCIGFRPNTELLK  253 (452)
T ss_dssp             HHHHHHHHHHHTTCEEEESSCEEEEEEETTEEEEEET-TSCEEEESEEEECCCEEECCGGGT
T ss_pred             HHHHHHHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEe-CCCEEECCEEEECcCCCCCHHHHH
Confidence            445577778889999999999999987566664 555 566899999999999873 23443

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.38  E-value=1e-06  Score=95.15  Aligned_cols=37  Identities=38%  Similarity=0.592  Sum_probs=34.1

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      .+||+|||||++|+++|..|++.  |.+|+|||+++.+|
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~--G~~V~lie~~~~~G  164 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRS--GARVMLLDERAEAG  164 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhC--CCcEEEEeCCCCCC
Confidence            47999999999999999999999  89999999986665

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.38  E-value=1.2e-06  Score=86.94  Aligned_cols=62  Identities=21%  Similarity=0.243  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCC--cEEEcCEEEEcCCcChH-HH--HHhcCCC
Q psy7710         207 TRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQG--DHLESSYALVCAGLQAD-EM--ALKSGCS  270 (473)
Q Consensus       207 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g--~~i~ad~VV~aaG~~s~-~l--~~~~g~~  270 (473)
                      ...+.+.+++.|++++++++|+++.. ++ +.+++.+|  .++.+|.||+|+|...+ .+  ++.+|+.
T Consensus       215 ~~~l~~~l~~~gv~i~~~~~v~~i~~-~~-v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~  281 (458)
T 1lvl_A          215 TAPVAESLKKLGIALHLGHSVEGYEN-GC-LLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLK  281 (458)
T ss_dssp             HHHHHHHHHHHTCEEETTCEEEEEET-TE-EEEECSSSCCCEECCSCEEECCCEEECCSSSSGGGSCCC
T ss_pred             HHHHHHHHHHCCCEEEECCEEEEEEe-CC-EEEEECCCceEEEECCEEEECcCCCcCCCCCCcHhcCCc
Confidence            34466677888999999999999986 43 66665455  58999999999998743 22  3555543

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.37  E-value=2.6e-07  Score=87.34  Aligned_cols=43  Identities=33%  Similarity=0.608  Sum_probs=37.0

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQ   98 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~   98 (473)
                      .++||+|||||++|+++|++|+++..|++|+|||+++.+|+..
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~  106 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGS  106 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceE
Confidence            4689999999999999999998644489999999987777654

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.36  E-value=2.1e-06  Score=84.52  Aligned_cols=47  Identities=9%  Similarity=0.154  Sum_probs=37.0

Q ss_pred             HHHcCcEEEeCceEEEEEEcCCeEEEEcC---CCcEEEcCEEEEcCCcCh
Q psy7710         214 FCELGGEIRLNQQVESFKENPESVTISTK---QGDHLESSYALVCAGLQA  260 (473)
Q Consensus       214 ~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~---~g~~i~ad~VV~aaG~~s  260 (473)
                      +++.|++++.+++|+.|+.+...+.+...   ++.++.+|++|+|||...
T Consensus        67 ~~~~~i~~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p  116 (437)
T 4eqs_A           67 YDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASA  116 (437)
T ss_dssp             HHHHCCEEEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEE
T ss_pred             HHhcCCEEEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCcc
Confidence            34579999999999999888777766543   234688999999999864

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.34  E-value=7.8e-07  Score=89.18  Aligned_cols=55  Identities=7%  Similarity=0.010  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcC--------CeEEEEcCCC-----cEEEcCEEEEcCCc
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENP--------ESVTISTKQG-----DHLESSYALVCAGL  258 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--------~~v~v~~~~g-----~~i~ad~VV~aaG~  258 (473)
                      ..+.+.|...+++.+..|+++++|+++...+        +.|.|++.++     .++.|+.||+|+|.
T Consensus       145 ~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~  212 (501)
T 4b63_A          145 LEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGG  212 (501)
T ss_dssp             HHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred             HHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCC
Confidence            4566666666777777899999999998643        2477776443     36889999999995

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.31  E-value=3.4e-06  Score=84.45  Aligned_cols=54  Identities=17%  Similarity=0.324  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      +.+.+.+.+++.|++++++++|+++..++....|.+ +|.++++|.||+|+|...
T Consensus       238 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~v~~v~~-~g~~i~~D~Vi~a~G~~p  291 (490)
T 2bc0_A          238 LTDLMAKNMEEHGIQLAFGETVKEVAGNGKVEKIIT-DKNEYDVDMVILAVGFRP  291 (490)
T ss_dssp             HHHHHHHHHHTTTCEEEETCCEEEEECSSSCCEEEE-SSCEEECSEEEECCCEEE
T ss_pred             HHHHHHHHHHhCCeEEEeCCEEEEEEcCCcEEEEEE-CCcEEECCEEEECCCCCc
Confidence            444577778889999999999999986433223555 456899999999999873

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.27  E-value=1.3e-05  Score=82.34  Aligned_cols=34  Identities=29%  Similarity=0.482  Sum_probs=32.0

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ..+||+|||||++|+++|..|++.  |.+|+|+|+.
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~~--g~~v~liE~~  139 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAKY--GAKTAVLDYV  139 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHHT--TCCEEEECCC
T ss_pred             ccccEEEECCCccHHHHHHHHHhC--CCeEEEEecc
Confidence            568999999999999999999999  9999999984

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.26  E-value=1.1e-05  Score=75.52  Aligned_cols=33  Identities=24%  Similarity=0.363  Sum_probs=30.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .+|+|||+|.+|+-+|..|++.  |.+|+|+++..
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~--G~~Vt~v~~~~  185 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKY--GSKVIILHRRD  185 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTT--SSEEEEECSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHh--CCeeeeecccc
Confidence            4799999999999999999999  99999999863

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.26  E-value=9.9e-07  Score=88.30  Aligned_cols=35  Identities=11%  Similarity=0.339  Sum_probs=32.1

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .+.+|||||||.+|+++|..|++.  +.+|+|||+++
T Consensus        41 ~KprVVIIGgG~AGl~~A~~L~~~--~~~VtLId~~~   75 (502)
T 4g6h_A           41 DKPNVLILGSGWGAISFLKHIDTK--KYNVSIISPRS   75 (502)
T ss_dssp             SSCEEEEECSSHHHHHHHHHSCTT--TCEEEEEESSS
T ss_pred             CCCCEEEECCcHHHHHHHHHhhhC--CCcEEEECCCC
Confidence            456899999999999999999988  89999999974

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.20  E-value=7e-06  Score=77.68  Aligned_cols=61  Identities=13%  Similarity=-0.011  Sum_probs=44.8

Q ss_pred             HHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcC---CC--cEEEcCEEEEcCCcChH-HHHHhcCCC
Q psy7710         210 MGEEFCELGGEIRLNQQVESFKENPESVTISTK---QG--DHLESSYALVCAGLQAD-EMALKSGCS  270 (473)
Q Consensus       210 l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~---~g--~~i~ad~VV~aaG~~s~-~l~~~~g~~  270 (473)
                      +.+.+++.|+++++++.|.++..+++...|++.   +|  .++.+|.||+|+|.... .+++.+|++
T Consensus       197 l~~~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~  263 (335)
T 2zbw_A          197 LMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGLA  263 (335)
T ss_dssp             HHHHHHTTSSEEETTEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEEEECGGGGGSCCC
T ss_pred             HHhccccCCeEEecCCcceeEccCCCeeEEEEEECCCCceEEEecCEEEEeecCCCCchHhhhccee
Confidence            556677789999999999999886543234432   55  57899999999998743 466666654

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.19  E-value=1.3e-06  Score=83.44  Aligned_cols=42  Identities=19%  Similarity=0.376  Sum_probs=38.2

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc-CcccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE-KELGMHQT   99 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~-~~~g~~~s   99 (473)
                      ..+||+|||||++|+++|+.|+++  |.+|+|+|+. +.+||...
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~--G~~V~VlE~~~~~vGGr~~   85 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRA--GHDVTILEANANRVGGRIK   85 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHT--SCEEEEECSCSSCCBTTCC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHC--CCcEEEEeccccccCCcee
Confidence            568999999999999999999999  8999999998 88887654

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.18  E-value=2.7e-05  Score=77.29  Aligned_cols=45  Identities=11%  Similarity=0.213  Sum_probs=37.5

Q ss_pred             cCcEEEeCceEEEEEEcCCeEEEEcC---CCc--EEEcCEEEEcCCcChH
Q psy7710         217 LGGEIRLNQQVESFKENPESVTISTK---QGD--HLESSYALVCAGLQAD  261 (473)
Q Consensus       217 ~Gv~i~~~~~V~~i~~~~~~v~v~~~---~g~--~i~ad~VV~aaG~~s~  261 (473)
                      .|+++++++.|+++..+++++.|++.   +|+  ++.+|.||+|+|....
T Consensus       329 ~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~  378 (463)
T 3s5w_A          329 PRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYERQ  378 (463)
T ss_dssp             CCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCEECC
T ss_pred             CCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCCCCC
Confidence            69999999999999988888776654   553  4899999999998743

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=98.17  E-value=1.5e-06  Score=83.66  Aligned_cols=43  Identities=21%  Similarity=0.436  Sum_probs=39.1

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG  100 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~  100 (473)
                      ..+||+|||||++|+++|++|+++  |.+|+|+|+.+.+||.+..
T Consensus        28 ~~~dv~IIGaG~aGl~aA~~l~~~--g~~v~v~E~~~~~GG~~~~   70 (397)
T 3hdq_A           28 KGFDYLIVGAGFAGSVLAERLASS--GQRVLIVDRRPHIGGNAYD   70 (397)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSSGGGCC
T ss_pred             CCCCEEEECccHHHHHHHHHHHHC--CCceEEEeccCCCCCccce
Confidence            578999999999999999999999  9999999999888877654

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.15  E-value=1e-05  Score=80.82  Aligned_cols=66  Identities=11%  Similarity=0.073  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCC-eEEEEcCCC-----cEEEcCEEEEcCCcCh-HHHH--HhcCCCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPE-SVTISTKQG-----DHLESSYALVCAGLQA-DEMA--LKSGCSL  271 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~v~v~~~~g-----~~i~ad~VV~aaG~~s-~~l~--~~~g~~~  271 (473)
                      +.+.+.+.+++.|++++++++|.++..+++ .+.|++.++     .++.+|.||+|+|... ..++  +.+|+..
T Consensus       229 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~  303 (483)
T 3dgh_A          229 MAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTV  303 (483)
T ss_dssp             HHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCC
T ss_pred             HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccc
Confidence            445577778889999999999999987543 455554433     2789999999999863 2333  5556553

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.14  E-value=1.9e-05  Score=74.06  Aligned_cols=52  Identities=12%  Similarity=0.148  Sum_probs=39.4

Q ss_pred             HHHHHHHHcCcEEEeCceEEEEEEcCCeE-EEEcCC----C--cEEEcCEEEEcCCcCh
Q psy7710         209 VMGEEFCELGGEIRLNQQVESFKENPESV-TISTKQ----G--DHLESSYALVCAGLQA  260 (473)
Q Consensus       209 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v-~v~~~~----g--~~i~ad~VV~aaG~~s  260 (473)
                      .+.+.+++.|++++++++|+++..+++++ .|++.+    |  .++++|.||+|+|...
T Consensus       189 ~l~~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p  247 (320)
T 1trb_A          189 RLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSP  247 (320)
T ss_dssp             HHHHHHHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCEEE
T ss_pred             HHHHhcccCCeEEEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCCCC
Confidence            45666778899999999999998876443 243322    3  5799999999999874

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=98.10  E-value=1.9e-06  Score=82.72  Aligned_cols=42  Identities=33%  Similarity=0.607  Sum_probs=37.7

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG  100 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~  100 (473)
                      ++||+|||||++|+++|++|+++  |.+|+|+|+++.+||.+..
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~--g~~v~v~E~~~~~GG~~~~   42 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKL--NKKVLVIEKRNHIGGNAYT   42 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGG--TCCEEEECSSSSSSGGGCE
T ss_pred             CCCEEEECcCHHHHHHHHHHHhC--CCcEEEEecCCCCCcceEe
Confidence            36899999999999999999999  8999999998888877544

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.10  E-value=1.3e-05  Score=76.81  Aligned_cols=61  Identities=13%  Similarity=0.177  Sum_probs=44.5

Q ss_pred             HHHHHHHcCcEEEeCceEEEEEEcCCeE---EEEcCCC--cEEEcCEEEEcCCcChH-HHHHhcCCC
Q psy7710         210 MGEEFCELGGEIRLNQQVESFKENPESV---TISTKQG--DHLESSYALVCAGLQAD-EMALKSGCS  270 (473)
Q Consensus       210 l~~~~~~~Gv~i~~~~~V~~i~~~~~~v---~v~~~~g--~~i~ad~VV~aaG~~s~-~l~~~~g~~  270 (473)
                      +.+.+++.|++++++++|+++..+++++   .+.+.+|  ..+++|.||+|+|...+ .+++.+|++
T Consensus       208 l~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~  274 (360)
T 3ab1_A          208 VERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLE  274 (360)
T ss_dssp             SHHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEETTCCEEEEECSEEEECCCBCCSCGGGGGSSCC
T ss_pred             HHHHhhcCceEEEcCcCHHHhccCCCceEEEEEEecCCCeEEEeCCEEEECCCCCCCHHHHHhhccc
Confidence            4445667899999999999999876543   3433466  57899999999997743 466666554

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=98.10  E-value=2.4e-06  Score=83.10  Aligned_cols=44  Identities=23%  Similarity=0.491  Sum_probs=38.9

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG  100 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~  100 (473)
                      .++||+|||||++|+++|++|+++. |.+|+|+|+++.+||.+..
T Consensus         6 ~~~~v~IiGaG~~Gl~aA~~L~~~~-g~~v~v~E~~~~~GG~~~~   49 (399)
T 1v0j_A            6 ARFDLFVVGSGFFGLTIAERVATQL-DKRVLVLERRPHIGGNAYS   49 (399)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHHS-CCCEEEECSSSSSSGGGCE
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHhC-CCCEEEEeCCCCCCCeeee
Confidence            4689999999999999999999872 6899999999889887654

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.10  E-value=1.6e-05  Score=76.24  Aligned_cols=60  Identities=15%  Similarity=0.223  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHcC-cEEEeCceEEEEEEcCCeEEEEcCCCcEEE-cCEEEEcCCcChHH-HHH
Q psy7710         206 VTRVMGEEFCELG-GEIRLNQQVESFKENPESVTISTKQGDHLE-SSYALVCAGLQADE-MAL  265 (473)
Q Consensus       206 ~~~~l~~~~~~~G-v~i~~~~~V~~i~~~~~~v~v~~~~g~~i~-ad~VV~aaG~~s~~-l~~  265 (473)
                      +.+.+.+.+++.| ++++++++|.++..+++.+.|++.+|..+. +|.||+|+|..... ++.
T Consensus       216 ~~~~l~~~l~~~g~v~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~~~~~~~~  278 (369)
T 3d1c_A          216 TRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIV  278 (369)
T ss_dssp             HHHHHHHHHHTTCCEEEECSCCEEEEEEETTEEEEEESSSCCEEESSCCEECCCBCGGGSHHH
T ss_pred             HHHHHHHHHhhCCcEEEecCcEEEEEEecCCceEEEecCCeEeccCCceEEeeccCCccchhh
Confidence            4455667777887 999999999999876777778888886665 59999999987433 443

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.08  E-value=1.2e-05  Score=80.54  Aligned_cols=57  Identities=11%  Similarity=0.137  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCC----cEEEcCEEEEcCCcChH
Q psy7710         205 LVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQG----DHLESSYALVCAGLQAD  261 (473)
Q Consensus       205 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g----~~i~ad~VV~aaG~~s~  261 (473)
                      .+.+.+.+.++++||+|+++++|++++.++....+.+.+|    +++.||.||+|+|...+
T Consensus       273 ~~~~~~~~~L~~~GV~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~  333 (502)
T 4g6h_A          273 KLSSYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKAR  333 (502)
T ss_dssp             HHHHHHHHHHHHTTCEEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCEECC
T ss_pred             HHHHHHHHHHHhcceeeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCCcCC
Confidence            3556677888999999999999999864433334555665    36899999999997643

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.06  E-value=2.2e-05  Score=73.64  Aligned_cols=56  Identities=18%  Similarity=0.275  Sum_probs=43.4

Q ss_pred             HcCcEEEeCceEEEEEEcCCeEEEEcCC---Cc--EEEcCEEEEcCCcCh-HHHHHhcCCCC
Q psy7710         216 ELGGEIRLNQQVESFKENPESVTISTKQ---GD--HLESSYALVCAGLQA-DEMALKSGCSL  271 (473)
Q Consensus       216 ~~Gv~i~~~~~V~~i~~~~~~v~v~~~~---g~--~i~ad~VV~aaG~~s-~~l~~~~g~~~  271 (473)
                      +.|++++++++|+++..+++...|++.+   |+  ++.+|.||+|+|... ..+++.+|+..
T Consensus       202 ~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~g~~~  263 (323)
T 3f8d_A          202 KPNVEFVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIET  263 (323)
T ss_dssp             CTTEEEECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEECCHHHHHHTTCCB
T ss_pred             CCCcEEEeCCEEEEEeccCceeEEEEEECCCCceEEEEcCEEEEEECCCCChhHHhhcCeee
Confidence            4599999999999999876544454433   54  789999999999884 47888887654

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=98.06  E-value=2.9e-06  Score=85.34  Aligned_cols=43  Identities=28%  Similarity=0.487  Sum_probs=38.2

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG  100 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~  100 (473)
                      ..+||+|||||++||++|+.|+++  |.+|+|+|+.+.+||....
T Consensus        12 ~~~~v~iiG~G~~Gl~aA~~l~~~--g~~v~v~E~~~~~GG~~~~   54 (504)
T 1sez_A           12 SAKRVAVIGAGVSGLAAAYKLKIH--GLNVTVFEAEGKAGGKLRS   54 (504)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHTT--SCEEEEECSSSSSCSSCCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC--CCcEEEEEeCCCCCCceee
Confidence            458999999999999999999999  9999999999888876543

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.05  E-value=1.2e-05  Score=75.53  Aligned_cols=59  Identities=19%  Similarity=0.254  Sum_probs=41.6

Q ss_pred             HHHHHcCcEEEeCceEEEEEEcCC---eEEEEc-CCCc--EEEcCEEEEcCCcCh-HHHHHhcCCC
Q psy7710         212 EEFCELGGEIRLNQQVESFKENPE---SVTIST-KQGD--HLESSYALVCAGLQA-DEMALKSGCS  270 (473)
Q Consensus       212 ~~~~~~Gv~i~~~~~V~~i~~~~~---~v~v~~-~~g~--~i~ad~VV~aaG~~s-~~l~~~~g~~  270 (473)
                      +.+++.|++++++++|+++..+++   ++.+.. .+|.  ++.+|.||+|+|... ..+++.+|+.
T Consensus       198 ~~l~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~gl~  263 (319)
T 3cty_A          198 QEIKKRNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVK  263 (319)
T ss_dssp             HHHHHTTCCEECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEECCCEEECCGGGTTSCCC
T ss_pred             HHHhcCCcEEEcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEeeCCccChHHHhhcccc
Confidence            344568999999999999988765   233332 2553  689999999999874 3566555543

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=98.05  E-value=1.4e-06  Score=94.80  Aligned_cols=37  Identities=22%  Similarity=0.326  Sum_probs=33.3

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEeccCccc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKEKELG   95 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~~~~g   95 (473)
                      .+||+|||||++|+++|++|+++  |. +|+|+|+.+.+|
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~--G~~~Vtv~E~~~~~G  224 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARL--GYSDITIFEKQEYVG  224 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHT--TCCCEEEEESSSSCS
T ss_pred             CCEEEEECccHHHHHHHHHHHhc--CCCcEEEEeCCCCCC
Confidence            57999999999999999999999  88 799999985554

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.02  E-value=3.7e-05  Score=76.82  Aligned_cols=66  Identities=14%  Similarity=0.111  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEc-CCeEEEEcC---CCc--EEEcCEEEEcCCcCh-HHH--HHhcCCCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKEN-PESVTISTK---QGD--HLESSYALVCAGLQA-DEM--ALKSGCSL  271 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~v~~~---~g~--~i~ad~VV~aaG~~s-~~l--~~~~g~~~  271 (473)
                      +.+.+.+.+++.|+++++++.|.++... ++.+.|+..   +|+  ++.+|.||+|+|... ..+  +..+|+..
T Consensus       227 ~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~  301 (488)
T 3dgz_A          227 MSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGIST  301 (488)
T ss_dssp             HHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCB
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEe
Confidence            4455777788899999999999999874 444555432   253  478999999999863 233  44556543

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.99  E-value=1.7e-05  Score=78.70  Aligned_cols=53  Identities=19%  Similarity=0.248  Sum_probs=41.3

Q ss_pred             cEEEeCceEEEEEEcC-CeEEEEcC--CCc--EEEcCEEEEcCCcChH-HH-HHhcCCCC
Q psy7710         219 GEIRLNQQVESFKENP-ESVTISTK--QGD--HLESSYALVCAGLQAD-EM-ALKSGCSL  271 (473)
Q Consensus       219 v~i~~~~~V~~i~~~~-~~v~v~~~--~g~--~i~ad~VV~aaG~~s~-~l-~~~~g~~~  271 (473)
                      ++++++++|+++..++ +++.|.+.  +|.  ++++|.||+|+|...+ .| ++.+|++.
T Consensus       226 v~i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~l~~~gl~~  285 (466)
T 3l8k_A          226 LNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSI  285 (466)
T ss_dssp             CCEECSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEECCCEEECCCTTTGGGTCCB
T ss_pred             EEEEECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEECcCCCcccccchhhcCcee
Confidence            9999999999998876 77777766  564  7999999999998732 24 56666654

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.95  E-value=6.3e-06  Score=79.60  Aligned_cols=42  Identities=17%  Similarity=0.429  Sum_probs=37.7

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG  100 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~  100 (473)
                      ++||+|||||++|+++|+.|+++  |.+|+|+|+++.+||.+..
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~--g~~v~v~E~~~~~GG~~~~   44 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEK--GHQVHIIDQRDHIGGNSYD   44 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT--TCEEEEEESSSSSSGGGCE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC--CCcEEEEEecCCcCCcccc
Confidence            47999999999999999999999  8999999999888876543

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.95  E-value=0.0002  Score=74.38  Aligned_cols=49  Identities=12%  Similarity=0.279  Sum_probs=38.6

Q ss_pred             HHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCC--cEEEcCEEEEcCCcCh
Q psy7710         209 VMGEEFCELGGEIRLNQQVESFKENPESVTISTKQG--DHLESSYALVCAGLQA  260 (473)
Q Consensus       209 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g--~~i~ad~VV~aaG~~s  260 (473)
                      .+.+.+++.|++++++++|+++.  ++++.++ .+|  .++.+|.||+|+|...
T Consensus       578 ~~~~~l~~~GV~v~~~~~v~~i~--~~~v~~~-~~G~~~~i~~D~Vi~a~G~~p  628 (671)
T 1ps9_A          578 IHRTTLLSRGVKMIPGVSYQKID--DDGLHVV-INGETQVLAVDNVVICAGQEP  628 (671)
T ss_dssp             HHHHHHHHTTCEEECSCEEEEEE--TTEEEEE-ETTEEEEECCSEEEECCCEEE
T ss_pred             HHHHHHHhcCCEEEeCcEEEEEe--CCeEEEe-cCCeEEEEeCCEEEECCCccc
Confidence            35667788999999999999987  3455554 455  5789999999999874

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.90  E-value=4.1e-05  Score=72.33  Aligned_cols=33  Identities=21%  Similarity=0.322  Sum_probs=30.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ..|+|||+|.+|+.+|..|++.  |.+|+++++.+
T Consensus       174 ~~v~vvG~G~~g~e~a~~l~~~--g~~v~~v~~~~  206 (338)
T 3itj_A          174 KPLAVIGGGDSACEEAQFLTKY--GSKVFMLVRKD  206 (338)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTT--SSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhc--CCEEEEEEcCC
Confidence            4699999999999999999999  89999999874

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.86  E-value=7.9e-05  Score=70.05  Aligned_cols=32  Identities=25%  Similarity=0.385  Sum_probs=29.9

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      +|+|||+|.+|+.+|..|++.  |.+|+++++.+
T Consensus       154 ~v~VvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~  185 (325)
T 2q7v_A          154 KVVVIGGGDAAVEEGMFLTKF--ADEVTVIHRRD  185 (325)
T ss_dssp             EEEEECCSHHHHHHHHHHTTT--CSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhc--CCEEEEEeCCC
Confidence            699999999999999999999  89999999874

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.86  E-value=0.00013  Score=73.48  Aligned_cols=55  Identities=13%  Similarity=0.108  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcC----CeEEE--EcCCC---cEEEcCEEEEcCCcCh
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENP----ESVTI--STKQG---DHLESSYALVCAGLQA  260 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~----~~v~v--~~~~g---~~i~ad~VV~aaG~~s  260 (473)
                      +.+.+.+.+++.|+++++++.++++...+    +.+.+  ...+|   .++.+|.||+|+|...
T Consensus       252 ~~~~~~~~l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p  315 (519)
T 3qfa_A          252 MANKIGEHMEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDA  315 (519)
T ss_dssp             HHHHHHHHHHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEE
T ss_pred             HHHHHHHHHHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcc
Confidence            44456777888999999999988887532    34443  33444   2568999999999863

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.85  E-value=8e-05  Score=69.48  Aligned_cols=33  Identities=30%  Similarity=0.374  Sum_probs=30.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ..|+|||+|.+|+.+|..|++.  |.+|+++++.+
T Consensus       144 ~~v~VvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~  176 (311)
T 2q0l_A          144 KEVAVLGGGDTAVEEAIYLANI--CKKVYLIHRRD  176 (311)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTT--SSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhc--CCEEEEEeeCC
Confidence            4799999999999999999999  89999999874

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=97.85  E-value=2.8e-05  Score=73.25  Aligned_cols=57  Identities=9%  Similarity=-0.036  Sum_probs=41.9

Q ss_pred             HHHcCcEEEeCceEEEEEEcCCeEEEEcCC-----CcEEEcCEEEEcCCcCh-HHHHHhcCCC
Q psy7710         214 FCELGGEIRLNQQVESFKENPESVTISTKQ-----GDHLESSYALVCAGLQA-DEMALKSGCS  270 (473)
Q Consensus       214 ~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~-----g~~i~ad~VV~aaG~~s-~~l~~~~g~~  270 (473)
                      +++.|++++++++|.++..+++...|.+.+     +.++.+|.||+|+|... ..+++.+|+.
T Consensus       199 l~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~  261 (332)
T 3lzw_A          199 LHASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLD  261 (332)
T ss_dssp             HHHSSCEEETTEEEEEEECSSSCCEEEEEETTSCCEEEEECSEEEECCCEECCCGGGGGSSCC
T ss_pred             HhcCCeEEEeCceeeEEecCCceEEEEEEecCCCceEEEECCEEEEeeccCCCchHHhhcCcc
Confidence            567899999999999998766543343322     35789999999999874 4566666554

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=97.83  E-value=9.3e-06  Score=79.77  Aligned_cols=35  Identities=17%  Similarity=0.299  Sum_probs=31.6

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .++||+|||||++|+++|+.|+++  |.+|+|||+.+
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~--G~~V~viE~~~   55 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQH--DVDVTVYTDRK   55 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHT--TCEEEEEESCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHC--CCeEEEEcCCC
Confidence            347999999999999999999999  99999999974

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=97.83  E-value=4e-05  Score=71.66  Aligned_cols=34  Identities=26%  Similarity=0.357  Sum_probs=31.2

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKE   93 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~   93 (473)
                      .+|+|||||.+|+-+|..|++.  |.+|+|+|+.+.
T Consensus       146 k~vvViGgG~ig~E~A~~l~~~--g~~Vtlv~~~~~  179 (312)
T 4gcm_A          146 KRLFVIGGGDSAVEEGTFLTKF--ADKVTIVHRRDE  179 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTT--CSEEEEECSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhc--CCEEEEEecccc
Confidence            3799999999999999999999  999999999854

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.82  E-value=7.3e-05  Score=69.72  Aligned_cols=33  Identities=33%  Similarity=0.388  Sum_probs=30.2

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .+|+|||+|.+|+.+|..|++.  +.+|+++++.+
T Consensus       145 ~~v~VvG~G~~g~e~A~~l~~~--g~~Vtlv~~~~  177 (310)
T 1fl2_A          145 KRVAVIGGGNSGVEAAIDLAGI--VEHVTLLEFAP  177 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT--BSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHh--CCEEEEEEeCc
Confidence            3699999999999999999998  89999999874

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.79  E-value=0.00049  Score=69.35  Aligned_cols=52  Identities=13%  Similarity=0.095  Sum_probs=39.2

Q ss_pred             HHHHHHHcCcEEEe--CceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHH-HHH
Q psy7710         210 MGEEFCELGGEIRL--NQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADE-MAL  265 (473)
Q Consensus       210 l~~~~~~~Gv~i~~--~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~-l~~  265 (473)
                      +.+.+.+.+|+++.  .+.|++|..++    |.+.+|+.+++|.||+|||..+.. .+.
T Consensus       336 y~~~l~~~nV~lv~~~~~~I~~it~~g----v~~~dG~~~~~DvIV~ATGf~~~~~~~~  390 (540)
T 3gwf_A          336 YYEVYNRPNVEAVAIKENPIREVTAKG----VVTEDGVLHELDVLVFATGFDAVDGNYR  390 (540)
T ss_dssp             TGGGGGSTTEEEEETTTSCEEEECSSE----EEETTCCEEECSEEEECCCBSCSSHHHH
T ss_pred             HHHHhcCCCEEEEeCCCCCccEEecCe----EEcCCCCEEECCEEEECCccCccccCcC
Confidence            34455677899985  78888886543    778889789999999999988543 443

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=97.75  E-value=0.00026  Score=72.54  Aligned_cols=63  Identities=11%  Similarity=0.109  Sum_probs=42.3

Q ss_pred             HHHHHHHHHcCcEEEeCceEEEEEEc------C---CeEEE--EcCCCcEEE--cCEEEEcCCcCh-HHH--HHhcCCC
Q psy7710         208 RVMGEEFCELGGEIRLNQQVESFKEN------P---ESVTI--STKQGDHLE--SSYALVCAGLQA-DEM--ALKSGCS  270 (473)
Q Consensus       208 ~~l~~~~~~~Gv~i~~~~~V~~i~~~------~---~~v~v--~~~~g~~i~--ad~VV~aaG~~s-~~l--~~~~g~~  270 (473)
                      ..+.+.+++.|+++++++.++++...      +   +.+.+  ...+|.++.  +|.||+|+|... ..+  ++.+|++
T Consensus       330 ~~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~  408 (598)
T 2x8g_A          330 EKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVK  408 (598)
T ss_dssp             HHHHHHHHHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECGGGTBCGGGCCC
T ss_pred             HHHHHHHHhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccccCccCchhcCce
Confidence            34566777889999999988888642      2   44444  345665554  999999999873 233  3455554

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.71  E-value=0.00036  Score=68.49  Aligned_cols=62  Identities=13%  Similarity=0.198  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEc--CC-----CcEEEcCEEEEcCCcCh-HHHHHhcCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTIST--KQ-----GDHLESSYALVCAGLQA-DEMALKSGC  269 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~--~~-----g~~i~ad~VV~aaG~~s-~~l~~~~g~  269 (473)
                      ....+.+.++++|++++++++|+++..  +.+.+..  .+     +.++.+|.||+|+|... ..+....|+
T Consensus       210 ~~~~~~~~l~~~gI~~~~~~~v~~v~~--~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~~~gl  279 (437)
T 3sx6_A          210 SKGILTKGLKEEGIEAYTNCKVTKVED--NKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGL  279 (437)
T ss_dssp             HHHHHHHHHHHTTCEEECSEEEEEEET--TEEEEEEECTTSCEEEEEEEECSEEEEECCEECCHHHHTSTTT
T ss_pred             HHHHHHHHHHHCCCEEEcCCEEEEEEC--CeEEEEecccCCccccceEEEEeEEEEcCCCcCchhhhccccc
Confidence            455677888899999999999999864  3444432  33     45789999999998653 344433343

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=97.70  E-value=0.0002  Score=66.77  Aligned_cols=46  Identities=17%  Similarity=0.190  Sum_probs=36.4

Q ss_pred             HHcCcEEEeCceEEEEEEcCCe---EEEEcCCCc--EEEcCEEEEcCCcCh
Q psy7710         215 CELGGEIRLNQQVESFKENPES---VTISTKQGD--HLESSYALVCAGLQA  260 (473)
Q Consensus       215 ~~~Gv~i~~~~~V~~i~~~~~~---v~v~~~~g~--~i~ad~VV~aaG~~s  260 (473)
                      ++.|++++++++|.++..++++   +.+.+.+|.  ++.+|.||+|+|...
T Consensus       194 ~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p  244 (315)
T 3r9u_A          194 KNEKIELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNV  244 (315)
T ss_dssp             HCTTEEEECSCEEEEEEEETTEEEEEEEECTTSCEEEECCSCEEECSCEEE
T ss_pred             hcCCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeecCeEEEEEcCCC
Confidence            5679999999999999887744   334444674  789999999999863

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.69  E-value=0.00017  Score=67.86  Aligned_cols=33  Identities=21%  Similarity=0.357  Sum_probs=30.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .+|+|||+|.+|+.+|..|++.  |.+|+++++.+
T Consensus       160 ~~v~VvG~G~~g~e~A~~l~~~--g~~V~lv~~~~  192 (333)
T 1vdc_A          160 KPLAVIGGGDSAMEEANFLTKY--GSKVYIIHRRD  192 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTT--SSEEEEECSSS
T ss_pred             CeEEEECCChHHHHHHHHHHhc--CCeEEEEecCC
Confidence            3799999999999999999998  89999999874

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.63  E-value=4.5e-05  Score=72.06  Aligned_cols=35  Identities=29%  Similarity=0.298  Sum_probs=32.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL   94 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~   94 (473)
                      +||+|||||++|+.+|+.|+++  |.+|+|+|+.+..
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~--G~~V~liE~~~~~   36 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRL--GVPVRLFEMRPKR   36 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT--TCCEEEECCTTTS
T ss_pred             CCEEEECchHHHHHHHHHHHHC--CCcEEEEeccCCc
Confidence            6899999999999999999999  9999999997543

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.59  E-value=0.00058  Score=68.96  Aligned_cols=34  Identities=15%  Similarity=0.281  Sum_probs=31.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKE   93 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~   93 (473)
                      .+|+|||+|.+|+-+|..|++.  +.+|+++++.+.
T Consensus       192 krV~VIG~G~sgve~a~~l~~~--~~~Vtv~~r~~~  225 (549)
T 4ap3_A          192 KRVGVIGTGSSGIQSIPIIAEQ--AEQLFVFQRSAN  225 (549)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--BSEEEEEESSCC
T ss_pred             CEEEEECCCchHHHHHHHHHhh--CCEEEEEECCCC
Confidence            4699999999999999999999  899999999853

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.59  E-value=0.00022  Score=67.25  Aligned_cols=33  Identities=27%  Similarity=0.393  Sum_probs=30.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .+|+|||+|.+|+.+|..|++.  |.+|+++++.+
T Consensus       156 ~~v~ViG~G~~g~e~a~~l~~~--g~~V~l~~~~~  188 (335)
T 2a87_A          156 QDIAVIGGGDSAMEEATFLTRF--ARSVTLVHRRD  188 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTT--CSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHh--CCeEEEEEcCC
Confidence            4799999999999999999998  89999999874

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.56  E-value=6e-05  Score=78.14  Aligned_cols=41  Identities=29%  Similarity=0.524  Sum_probs=37.3

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQ   98 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~   98 (473)
                      ..+||+|||||++|+++|+.|+++  |.+|+|+|+.+.+||..
T Consensus       106 ~~~~v~viG~G~~gl~~a~~l~~~--g~~v~~~e~~~~~gg~~  146 (662)
T 2z3y_A          106 KTGKVIIIGSGVSGLAAARQLQSF--GMDVTLLEARDRVGGRV  146 (662)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHT--TCEEEEECSSSSSBTTC
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHC--CCeEEEEecCCCCCCcc
Confidence            467999999999999999999999  99999999988888753

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.55  E-value=6.4e-05  Score=79.46  Aligned_cols=40  Identities=30%  Similarity=0.549  Sum_probs=36.9

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMH   97 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~   97 (473)
                      ...||+|||||++||++|+.|+++  |.+|+|+|+.+.+||.
T Consensus       277 ~~~~v~viG~G~aGl~~A~~l~~~--g~~v~v~E~~~~~GG~  316 (852)
T 2xag_A          277 KTGKVIIIGSGVSGLAAARQLQSF--GMDVTLLEARDRVGGR  316 (852)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSSCTT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC--CCcEEEEEecCcCCCc
Confidence            457999999999999999999999  9999999999888875

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.50  E-value=8.7e-05  Score=77.80  Aligned_cols=40  Identities=28%  Similarity=0.425  Sum_probs=35.9

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMH   97 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~   97 (473)
                      ..+||+|||||++|+++|+.|+++  |.+|+|||+.+.+|+.
T Consensus       388 ~~~~VvIIGgGpAGl~aA~~L~~~--G~~Vtlie~~~~~GG~  427 (729)
T 1o94_A          388 NKDSVLIVGAGPSGSEAARVLMES--GYTVHLTDTAEKIGGH  427 (729)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSTTTT
T ss_pred             CCceEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCCCcCCe
Confidence            457999999999999999999999  8999999998766654

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.45  E-value=0.00085  Score=66.21  Aligned_cols=46  Identities=15%  Similarity=0.236  Sum_probs=33.5

Q ss_pred             cCcEEEeCceEEEEEEcC-C-eE-EEEcC---------------CC--cEEEcCEEEEcCCcChHH
Q psy7710         217 LGGEIRLNQQVESFKENP-E-SV-TISTK---------------QG--DHLESSYALVCAGLQADE  262 (473)
Q Consensus       217 ~Gv~i~~~~~V~~i~~~~-~-~v-~v~~~---------------~g--~~i~ad~VV~aaG~~s~~  262 (473)
                      +|+++++++.+.+|..++ + .+ .|++.               +|  .++.||.||+|+|.....
T Consensus       270 ~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~  335 (460)
T 1cjc_A          270 RAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRP  335 (460)
T ss_dssp             EEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCEECCC
T ss_pred             ceEEEECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCceEEEEcCEEEECCCCCCCC
Confidence            899999999999998763 3 22 22221               23  478999999999987543

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=97.43  E-value=0.00012  Score=76.22  Aligned_cols=38  Identities=26%  Similarity=0.407  Sum_probs=34.4

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      ..+||+|||||++|+++|..|+++  |.+|+|||+.+.+|
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~~--g~~V~lie~~~~~g  409 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAAR--GHQVTLFDAHSEIG  409 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTT--TCEEEEEESSSSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCCCCC
Confidence            357999999999999999999999  89999999986554

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.42  E-value=0.00044  Score=69.50  Aligned_cols=33  Identities=33%  Similarity=0.388  Sum_probs=30.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .+|+|||+|.+|+-+|..|++.  +.+|+++++.+
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~~--g~~Vtlv~~~~  388 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAGI--VEHVTLLEFAP  388 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHH--BSEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhh--CCEEEEEEeCc
Confidence            3799999999999999999999  89999999874

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.34  E-value=0.0001  Score=75.81  Aligned_cols=37  Identities=27%  Similarity=0.486  Sum_probs=34.1

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCC--------CeEEEEeccC-cc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPK--------MKICLVEKEK-EL   94 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G--------~~V~viE~~~-~~   94 (473)
                      ...+|+|||||++||++|+.|+++  |        .+|+|+|+.+ ++
T Consensus        55 ~~~~v~IiGaGiaGL~aA~~L~~~--g~~~~~~~~~~V~v~E~~~~r~  100 (721)
T 3ayj_A           55 GNYRIAIVGGGAGGIAALYELGRL--AATLPAGSGIDVQIYEADPDSF  100 (721)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHH--HTTSCTTCEEEEEEECCCTTBG
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHc--CcccccCCCceEEEEeccCccc
Confidence            357899999999999999999998  7        8999999997 78

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.34  E-value=0.00057  Score=73.86  Aligned_cols=56  Identities=13%  Similarity=0.207  Sum_probs=40.0

Q ss_pred             HHHHcCcEEEeCceEEEEEEc--CC--eEEEEc--C---CC--cEEEcCEEEEcCCcC-hHHHHHhcC
Q psy7710         213 EFCELGGEIRLNQQVESFKEN--PE--SVTIST--K---QG--DHLESSYALVCAGLQ-ADEMALKSG  268 (473)
Q Consensus       213 ~~~~~Gv~i~~~~~V~~i~~~--~~--~v~v~~--~---~g--~~i~ad~VV~aaG~~-s~~l~~~~g  268 (473)
                      .+++.|++|++++.|+++..+  +.  .+.+..  .   +|  .++.+|.||+|+|.. ...++...+
T Consensus       325 ~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~~~  392 (965)
T 2gag_A          325 QAVADGVQVISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQRQ  392 (965)
T ss_dssp             HHHHTTCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHHTT
T ss_pred             HHHhCCeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHhCC
Confidence            356789999999999999873  33  233433  1   24  579999999999986 346666554

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.30  E-value=0.00078  Score=66.41  Aligned_cols=56  Identities=11%  Similarity=0.129  Sum_probs=39.2

Q ss_pred             HHHHHHHHHH------cCcEEEeCceEEEEEEcCC--eEEEEc--------------CCC--cEEEcCEEEEcCCcChHH
Q psy7710         207 TRVMGEEFCE------LGGEIRLNQQVESFKENPE--SVTIST--------------KQG--DHLESSYALVCAGLQADE  262 (473)
Q Consensus       207 ~~~l~~~~~~------~Gv~i~~~~~V~~i~~~~~--~v~v~~--------------~~g--~~i~ad~VV~aaG~~s~~  262 (473)
                      .+.|.+.+++      +|+++++++.+.+|..++.  ++.+..              .+|  .++.||.||+|+|..+..
T Consensus       249 ~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~  328 (456)
T 1lqt_A          249 IKVLRGYADREPRPGHRRMVFRFLTSPIEIKGKRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVP  328 (456)
T ss_dssp             HHHHHHHHTCC-CTTSEEEEEECSEEEEEEECSSSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEECCC
T ss_pred             HHHHHHHhhcCCCCCCceEEEEeCCCCeEEecCCcEeEEEEEEEEecCCCcccccccCCCceEEEEcCEEEEccccccCC
Confidence            4455666655      7999999999999986543  233321              133  468999999999987543

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.28  E-value=0.00014  Score=71.84  Aligned_cols=39  Identities=21%  Similarity=0.185  Sum_probs=33.8

Q ss_pred             cccEEEEcCChHHHHHHHHHHh-cCC----CCeEEEEeccCccc
Q psy7710          57 LYDVVVVGGGIVGVATARELKL-NYP----KMKICLVEKEKELG   95 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~-~~~----G~~V~viE~~~~~g   95 (473)
                      .+||+|||||++|+++|..|++ ..+    |.+|+|||+.+.++
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~g   46 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPW   46 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCC
Confidence            5799999999999999999998 643    68999999986554

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.27  E-value=0.00021  Score=70.61  Aligned_cols=40  Identities=25%  Similarity=0.243  Sum_probs=33.9

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      ..+||+|||||++|+++|..|++.+++.+|+|||+.+.++
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~g   44 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPF   44 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSC
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCC
Confidence            4579999999999999999999993339999999986553

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.24  E-value=0.00027  Score=71.81  Aligned_cols=55  Identities=13%  Similarity=0.207  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcC--CeE-EEEcCCCcEEEcCEEEEcCCc
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENP--ESV-TISTKQGDHLESSYALVCAGL  258 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~~v-~v~~~~g~~i~ad~VV~aaG~  258 (473)
                      ..+.++|.+.++..|++|+++++|.+|..++  +++ .|.+.+|++++||.||.....
T Consensus       378 g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~  435 (650)
T 1vg0_A          378 GELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSY  435 (650)
T ss_dssp             THHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGG
T ss_pred             hHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhh
Confidence            6788999999999999999999999998776  544 466677889999999885543

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.23  E-value=0.00057  Score=71.63  Aligned_cols=32  Identities=16%  Similarity=0.202  Sum_probs=29.9

Q ss_pred             cEEEEc--CChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          59 DVVVVG--GGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        59 dVvIIG--aGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      +|+|||  +|.+|+.+|..|++.  |.+|+++++.+
T Consensus       530 ~VvVIG~GgG~~g~e~A~~l~~~--G~~Vtlv~~~~  563 (729)
T 1o94_A          530 RVVILNADTYFMAPSLAEKLATA--GHEVTIVSGVH  563 (729)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHT--TCEEEEEESSC
T ss_pred             eEEEEcCCCCchHHHHHHHHHHc--CCEEEEEeccc
Confidence            799999  999999999999999  89999999873

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.16  E-value=0.0032  Score=68.49  Aligned_cols=32  Identities=22%  Similarity=0.269  Sum_probs=29.4

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCC-eEEEEeccC
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKM-KICLVEKEK   92 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~~   92 (473)
                      +|+|||||.+|+-+|..|++.  |. +|+++++.+
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~--G~~~Vtvv~r~~  366 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRC--GARRVFLVFRKG  366 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHT--TCSEEEEECSSC
T ss_pred             cEEEECCChHHHHHHHHHHHc--CCCEEEEEEecC
Confidence            799999999999999999999  75 899999873

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.14  E-value=0.0017  Score=63.09  Aligned_cols=58  Identities=12%  Similarity=0.285  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhc
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKS  267 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~  267 (473)
                      +.+.+.+.+++.|++++++++|+++..+  .  |.+.+|+++++|.||+|+|...+.++..+
T Consensus       220 ~~~~~~~~l~~~gV~~~~~~~v~~i~~~--~--v~~~~g~~~~~D~vi~a~G~~~~~~l~~~  277 (409)
T 3h8l_A          220 SRKAVASIYNQLGIKLVHNFKIKEIREH--E--IVDEKGNTIPADITILLPPYTGNPALKNS  277 (409)
T ss_dssp             HHHHHHHHHHHHTCEEECSCCEEEECSS--E--EEETTSCEEECSEEEEECCEECCHHHHTS
T ss_pred             HHHHHHHHHHHCCCEEEcCCceEEECCC--e--EEECCCCEEeeeEEEECCCCCccHHHHhc
Confidence            4455677778889999999999998643  2  56677879999999999999876777765

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.12  E-value=0.00073  Score=66.56  Aligned_cols=33  Identities=21%  Similarity=0.277  Sum_probs=29.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKM-KICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~~   92 (473)
                      .+|+|||||.+|+-+|..+.+.  |. +|+++++.+
T Consensus       265 k~VvVIGgG~~a~d~A~~~~r~--Ga~~Vtiv~r~~  298 (456)
T 2vdc_G          265 KHVVVLGGGDTAMDCVRTAIRQ--GATSVKCLYRRD  298 (456)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHT--TCSEEEEECSSC
T ss_pred             CEEEEECCChhHHHHHHHHHHc--CCCEEEEEEeCC
Confidence            4699999999999999999998  76 599999874

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.00  E-value=0.0025  Score=63.53  Aligned_cols=35  Identities=26%  Similarity=0.429  Sum_probs=31.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL   94 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~   94 (473)
                      .+|+|||+|.+|+.+|..|++.  |.+|+++++.+.+
T Consensus       199 ~~vvViGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~  233 (491)
T 3urh_A          199 ASMIVVGGGVIGLELGSVWARL--GAKVTVVEFLDTI  233 (491)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHH--TCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHc--CCEEEEEeccccc
Confidence            4689999999999999999999  8999999998644

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=96.85  E-value=0.018  Score=58.02  Aligned_cols=33  Identities=15%  Similarity=0.345  Sum_probs=30.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ..|+|||+|.+|+-+|..|++.  +.+|+++++.+
T Consensus       187 k~V~VIG~G~sg~e~a~~l~~~--~~~vtv~~r~~  219 (542)
T 1w4x_A          187 QRVGVIGTGSSGIQVSPQIAKQ--AAELFVFQRTP  219 (542)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--BSEEEEEESSC
T ss_pred             CEEEEECCCccHHHHHHHHhhc--CceEEEEEcCC
Confidence            4699999999999999999999  89999999874

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=96.69  E-value=0.0048  Score=61.30  Aligned_cols=35  Identities=29%  Similarity=0.456  Sum_probs=31.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL   94 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~   94 (473)
                      .+++|||+|.+|+.+|..|++.  |.+|+++++.+.+
T Consensus       192 ~~v~ViGgG~~g~e~A~~l~~~--g~~Vtli~~~~~~  226 (484)
T 3o0h_A          192 KSIVIVGGGYIGVEFANIFHGL--GVKTTLLHRGDLI  226 (484)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHc--CCeEEEEECCCcc
Confidence            4799999999999999999999  8999999998543

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=96.66  E-value=0.0013  Score=62.20  Aligned_cols=31  Identities=19%  Similarity=0.380  Sum_probs=28.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .+|+|||+|.+|+.+|..|++.  + +|+++.+.
T Consensus       164 ~~v~VvG~G~~g~e~a~~l~~~--~-~v~~v~~~  194 (357)
T 4a9w_A          164 MRVAIIGGGNSGAQILAEVSTV--A-ETTWITQH  194 (357)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTT--S-EEEEECSS
T ss_pred             CEEEEECCCcCHHHHHHHHHhh--C-CEEEEECC
Confidence            4799999999999999999998  6 69999886

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=96.64  E-value=0.0059  Score=60.55  Aligned_cols=35  Identities=26%  Similarity=0.309  Sum_probs=31.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL   94 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~   94 (473)
                      .+|+|||+|.+|+.+|..|++.  |.+|+++++.+.+
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~  222 (478)
T 3dk9_A          188 GRSVIVGAGYIAVEMAGILSAL--GSKTSLMIRHDKV  222 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSS
T ss_pred             ccEEEECCCHHHHHHHHHHHHc--CCeEEEEEeCCcc
Confidence            4799999999999999999999  8999999997543

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=96.53  E-value=0.006  Score=60.25  Aligned_cols=34  Identities=12%  Similarity=-0.021  Sum_probs=31.0

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ..+|+|||+|.+|+-+|..|++.  |.+|+++++.+
T Consensus       197 ~k~VvVVG~G~sg~eiA~~l~~~--g~~V~li~~~~  230 (464)
T 2xve_A          197 DKTVLLVGSSYSAEDIGSQCYKY--GAKKLISCYRT  230 (464)
T ss_dssp             TSEEEEECCSTTHHHHHHHHHHT--TCSEEEEECSS
T ss_pred             CCEEEEEcCCCCHHHHHHHHHHh--CCeEEEEEECC
Confidence            35799999999999999999999  89999999874

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=96.45  E-value=0.0035  Score=61.63  Aligned_cols=33  Identities=24%  Similarity=0.155  Sum_probs=30.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCe-EEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMK-ICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~-V~viE~~~   92 (473)
                      .+|+|||+|.+|+-+|..|++.  +.+ |+++++.+
T Consensus       213 k~VvVvG~G~sg~e~A~~l~~~--~~~~V~l~~r~~  246 (447)
T 2gv8_A          213 ESVLVVGGASSANDLVRHLTPV--AKHPIYQSLLGG  246 (447)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTT--SCSSEEEECTTC
T ss_pred             CEEEEEccCcCHHHHHHHHHHH--hCCcEEEEeCCC
Confidence            4699999999999999999999  888 99999873

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=96.16  E-value=0.0069  Score=60.28  Aligned_cols=59  Identities=10%  Similarity=0.095  Sum_probs=49.6

Q ss_pred             HHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh-HHHHHhcCCC
Q psy7710         212 EEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA-DEMALKSGCS  270 (473)
Q Consensus       212 ~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s-~~l~~~~g~~  270 (473)
                      +.++++|++|++++.|+++..+++...|.+.+|.++++|.||+|+|.+. ..|++.+|++
T Consensus       265 ~~l~~~GV~v~~~~~v~~i~~~~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~g~~  324 (493)
T 1y56_A          265 QELERWGIDYVHIPNVKRVEGNEKVERVIDMNNHEYKVDALIFADGRRPDINPITQAGGK  324 (493)
T ss_dssp             HHHHHHTCEEEECSSEEEEECSSSCCEEEETTCCEEECSEEEECCCEEECCHHHHHTTCC
T ss_pred             HHHHhCCcEEEeCCeeEEEecCCceEEEEeCCCeEEEeCEEEECCCcCcCchHHHhcCCC
Confidence            6778889999999999999876554557777787899999999999984 4688988875

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.60  E-value=0.018  Score=46.34  Aligned_cols=34  Identities=21%  Similarity=0.377  Sum_probs=31.2

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      +-.|+|||.|-.|..+|..|.+.  |.+|+++|+++
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~--g~~v~vid~~~   40 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLAS--DIPLVVIETSR   40 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHT--TCCEEEEESCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCH
Confidence            45799999999999999999999  89999999974

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.43  E-value=0.016  Score=46.38  Aligned_cols=32  Identities=25%  Similarity=0.426  Sum_probs=30.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .+|+|||+|..|..+|..|.+.  |.+|+++|+.
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~--g~~v~~~d~~   36 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEK--GHDIVLIDID   36 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCeEEEEECC
Confidence            5799999999999999999999  8999999986

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=95.39  E-value=0.065  Score=55.65  Aligned_cols=34  Identities=21%  Similarity=0.222  Sum_probs=30.8

Q ss_pred             cEEEEc--CChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710          59 DVVVVG--GGIVGVATARELKLNYPKMKICLVEKEKEL   94 (473)
Q Consensus        59 dVvIIG--aGi~Gl~~A~~L~~~~~G~~V~viE~~~~~   94 (473)
                      +|+|||  +|.+|+.+|..|++.  |.+|+++++.+.+
T Consensus       525 ~VvViG~ggG~~g~e~A~~L~~~--g~~Vtlv~~~~~l  560 (690)
T 3k30_A          525 KVVVYDDDHYYLGGVVAELLAQK--GYEVSIVTPGAQV  560 (690)
T ss_dssp             EEEEEECSCSSHHHHHHHHHHHT--TCEEEEEESSSST
T ss_pred             EEEEEcCCCCccHHHHHHHHHhC--CCeeEEEeccccc
Confidence            599999  999999999999999  8999999987543

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.18  E-value=0.024  Score=46.46  Aligned_cols=34  Identities=21%  Similarity=0.283  Sum_probs=31.0

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ...|+|||+|..|..+|..|.+.  |.+|+++++.+
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~~--g~~V~vid~~~   52 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASSS--GHSVVVVDKNE   52 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCG
T ss_pred             CCcEEEECCCHHHHHHHHHHHhC--CCeEEEEECCH
Confidence            45799999999999999999999  89999999874

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=95.11  E-value=0.023  Score=45.68  Aligned_cols=33  Identities=36%  Similarity=0.591  Sum_probs=30.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ..|+|+|+|..|..+|..|.++  |.+|+++|+++
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~--g~~V~~id~~~   39 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAA--GKKVLAVDKSK   39 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT--TCCEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCeEEEEECCH
Confidence            4699999999999999999999  89999999873

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=95.09  E-value=0.026  Score=43.51  Aligned_cols=33  Identities=24%  Similarity=0.494  Sum_probs=30.2

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCC-CeEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPK-MKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G-~~V~viE~~   91 (473)
                      ...|+|+|+|..|..++..|.+.  | .+|+++++.
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~--g~~~v~~~~r~   38 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTS--SNYSVTVADHD   38 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHC--SSEEEEEEESC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhC--CCceEEEEeCC
Confidence            35799999999999999999999  7 899999986

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=94.88  E-value=0.018  Score=57.80  Aligned_cols=38  Identities=34%  Similarity=0.545  Sum_probs=31.9

Q ss_pred             CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccc
Q psy7710           7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE   45 (473)
Q Consensus         7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~   45 (473)
                      ...|||+|||+|++|+++|.+|+ ..++.+++++|+.+.
T Consensus        15 ~~~yD~IIVGsG~aG~v~A~rLs-e~~~~~VLvLEaG~~   52 (526)
T 3t37_A           15 APNCDIVIVGGGSAGSLLAARLS-EDPDSRVLLIEAGEE   52 (526)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHT-TSTTSCEEEECSSBC
T ss_pred             CCCeeEEEECccHHHHHHHHHHH-hCCCCeEEEEcCCCC
Confidence            45799999999999999999999 457889999997754

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=94.79  E-value=0.019  Score=58.03  Aligned_cols=37  Identities=27%  Similarity=0.579  Sum_probs=32.8

Q ss_pred             CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710           7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK   44 (473)
Q Consensus         7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~   44 (473)
                      ...|||+|||+|++|+++|.+|+ ..|+.++.++|+.+
T Consensus        17 ~~~yDyIIVGgG~AG~vlA~RLs-e~~~~~VLlLEaG~   53 (583)
T 3qvp_A           17 GRTVDYIIAGGGLTGLTTAARLT-ENPNISVLVIESGS   53 (583)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHT-TSTTCCEEEECSSC
T ss_pred             CCCccEEEECCcHHHHHHHHHHH-hCCCCcEEEEecCC
Confidence            46799999999999999999998 45788999998776

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=94.69  E-value=0.023  Score=57.49  Aligned_cols=38  Identities=32%  Similarity=0.554  Sum_probs=33.0

Q ss_pred             CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccc
Q psy7710           7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE   45 (473)
Q Consensus         7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~   45 (473)
                      ...|||+|||+|.+|+++|.+|+ ..++.++.++|+.+.
T Consensus         4 ~~~yDyIVVGgG~AG~v~A~rLs-e~~~~~VLllEaG~~   41 (577)
T 3q9t_A            4 GSHFDFVIVGGGTAGNTVAGRLA-ENPNVTVLIVEAGIG   41 (577)
T ss_dssp             TCEEEEEEESCSHHHHHHHHHHT-TSTTSCEEEECSSCS
T ss_pred             CCcccEEEECCcHHHHHHHHHHH-hCCCCcEEEEecCCC
Confidence            46799999999999999999999 457789999987765

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=94.67  E-value=0.031  Score=52.14  Aligned_cols=37  Identities=27%  Similarity=0.623  Sum_probs=30.2

Q ss_pred             CCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710           8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK   44 (473)
Q Consensus         8 ~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~   44 (473)
                      ..+|.+|||+|.+|.++|..++....+.++.++++.+
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~  100 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV  100 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            4579999999999999999998655677888776543

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=94.60  E-value=0.041  Score=44.90  Aligned_cols=32  Identities=16%  Similarity=0.293  Sum_probs=30.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ..|+|+|+|..|...|..|.+.  |.+|+++|+.
T Consensus         4 ~~vlI~G~G~vG~~la~~L~~~--g~~V~vid~~   35 (153)
T 1id1_A            4 DHFIVCGHSILAINTILQLNQR--GQNVTVISNL   35 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCCEEEEECC
Confidence            4699999999999999999999  8999999986

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=94.59  E-value=0.07  Score=54.26  Aligned_cols=43  Identities=21%  Similarity=0.335  Sum_probs=39.1

Q ss_pred             CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCccc
Q psy7710          55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQT   99 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s   99 (473)
                      +.+|||+|||+|+.|...|..|++.  |.+|++|||++.+|+...
T Consensus         6 ~~~~D~~i~GtGl~~~~~a~~~~~~--g~~vl~id~~~~~gg~~~   48 (650)
T 1vg0_A            6 PSDFDVIVIGTGLPESIIAAACSRS--GQRVLHVDSRSYYGGNWA   48 (650)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCGGGC
T ss_pred             CCcCCEEEECCcHHHHHHHHHHHhC--CCEEEEEcCCCcccCccc
Confidence            4579999999999999999999999  999999999988887653

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=94.43  E-value=0.033  Score=51.49  Aligned_cols=33  Identities=30%  Similarity=0.421  Sum_probs=30.3

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ...|.|||+|..|...|..++.+  |++|+++|..
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~--G~~V~l~D~~   38 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASG--GFRVKLYDIE   38 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHT--TCCEEEECSC
T ss_pred             CCeEEEECCcHHHHHHHHHHHhC--CCeEEEEECC
Confidence            35799999999999999999999  9999999986

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=94.21  E-value=0.052  Score=50.70  Aligned_cols=35  Identities=20%  Similarity=0.357  Sum_probs=31.0

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEeccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKEK   92 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~~   92 (473)
                      ...+|+|||+|..|.++|..|+..  |. +|+++|...
T Consensus         8 ~~~kI~VIGaG~vG~~lA~~la~~--g~~~V~L~D~~~   43 (331)
T 1pzg_A            8 RRKKVAMIGSGMIGGTMGYLCALR--ELADVVLYDVVK   43 (331)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC--CCCeEEEEECCh
Confidence            346899999999999999999998  77 999999873

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=94.13  E-value=0.043  Score=53.80  Aligned_cols=35  Identities=29%  Similarity=0.249  Sum_probs=31.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL   94 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~   94 (473)
                      .+++|||+|.+|+.+|..|++.  |.+|+|+|+.+.+
T Consensus       168 ~~vvViGgG~~g~e~A~~l~~~--g~~Vtlv~~~~~~  202 (450)
T 1ges_A          168 ERVAVVGAGYIGVELGGVINGL--GAKTHLFEMFDAP  202 (450)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhc--CCEEEEEEeCCch
Confidence            4799999999999999999999  9999999998543

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=93.83  E-value=0.13  Score=48.93  Aligned_cols=34  Identities=12%  Similarity=0.248  Sum_probs=30.9

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ...|+|||+|.+|+.+|..|...  |.+|+++|+.+
T Consensus       190 ~~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~  223 (405)
T 4dio_A          190 AAKIFVMGAGVAGLQAIATARRL--GAVVSATDVRP  223 (405)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC--CCEEEEEcCCH
Confidence            35799999999999999999998  89999999873

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=93.81  E-value=0.087  Score=51.27  Aligned_cols=34  Identities=29%  Similarity=0.503  Sum_probs=31.3

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ...|.|||+|..|...|..|+++  |.+|+++|+.+
T Consensus        54 i~kVaVIGaG~MG~~IA~~la~a--G~~V~l~D~~~   87 (460)
T 3k6j_A           54 VNSVAIIGGGTMGKAMAICFGLA--GIETFLVVRNE   87 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEECcH
Confidence            35799999999999999999999  99999999874

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=93.80  E-value=0.051  Score=43.48  Aligned_cols=32  Identities=22%  Similarity=0.278  Sum_probs=29.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ..|+|+|+|..|..+|..|.+.  |.+|+++++.
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~--g~~v~~~d~~   38 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRM--GHEVLAVDIN   38 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT--TCCCEEEESC
T ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCEEEEEeCC
Confidence            3599999999999999999999  8999999986

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=93.73  E-value=0.069  Score=49.20  Aligned_cols=32  Identities=28%  Similarity=0.532  Sum_probs=30.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ..|.|||+|..|...|..|+++  |.+|+++|+.
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~--G~~V~~~d~~   47 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAAT--GHTVVLVDQT   47 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCeEEEEECC
Confidence            4699999999999999999999  8999999986

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=93.54  E-value=0.16  Score=47.99  Aligned_cols=34  Identities=18%  Similarity=0.154  Sum_probs=30.9

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ...|+|||+|.+|+.+|..|...  |.+|+++|+.+
T Consensus       184 ~~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~  217 (381)
T 3p2y_A          184 PASALVLGVGVAGLQALATAKRL--GAKTTGYDVRP  217 (381)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHH--TCEEEEECSSG
T ss_pred             CCEEEEECchHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence            35799999999999999999999  89999999873

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=93.50  E-value=0.056  Score=47.11  Aligned_cols=32  Identities=22%  Similarity=0.496  Sum_probs=29.9

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      +|+|||+|..|..+|..|.++  |.+|+++|+++
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~--g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSR--KYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHT--TCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHhC--CCeEEEEECCH
Confidence            599999999999999999999  89999999874

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=93.48  E-value=0.066  Score=52.86  Aligned_cols=35  Identities=23%  Similarity=0.325  Sum_probs=31.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL   94 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~   94 (473)
                      .+|+|||+|.+|+.+|..|++.  |.+|+++|+.+.+
T Consensus       179 ~~vvViGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~  213 (474)
T 1zmd_A          179 EKMVVIGAGVIGVELGSVWQRL--GADVTAVEFLGHV  213 (474)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHc--CCEEEEEeccCcc
Confidence            4699999999999999999999  8999999998654

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=93.42  E-value=0.084  Score=48.12  Aligned_cols=32  Identities=19%  Similarity=0.366  Sum_probs=30.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ..|.|||+|..|...|..|+++  |.+|+++|+.
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~--G~~V~l~d~~   36 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFH--GFAVTAYDIN   36 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCeEEEEeCC
Confidence            4699999999999999999999  9999999987

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=93.39  E-value=0.038  Score=55.75  Aligned_cols=37  Identities=30%  Similarity=0.364  Sum_probs=32.3

Q ss_pred             CCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccccc
Q psy7710           9 LYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEF   46 (473)
Q Consensus         9 ~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~   46 (473)
                      +|||+|||+|++|+++|.+|+. .++.++.++|+.+..
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse-~~~~~VlllEaG~~~   38 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTE-DPDVSVLVLEAGVSD   38 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTT-STTCCEEEECSSBCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHh-CcCCcEEEEecCCcc
Confidence            5999999999999999999994 578899999877543

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=93.34  E-value=0.072  Score=52.87  Aligned_cols=35  Identities=17%  Similarity=0.333  Sum_probs=32.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL   94 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~   94 (473)
                      .+|+|||+|.+|+.+|..|++.  |.+|+++++.+.+
T Consensus       175 k~vvViGgG~ig~E~A~~l~~~--g~~Vtlv~~~~~~  209 (492)
T 3ic9_A          175 KSVAVFGPGVIGLELGQALSRL--GVIVKVFGRSGSV  209 (492)
T ss_dssp             SEEEEESSCHHHHHHHHHHHHT--TCEEEEECCTTCC
T ss_pred             CeEEEECCCHHHHHHHHHHHHc--CCeEEEEEECCcc
Confidence            4799999999999999999999  9999999998654

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=93.20  E-value=0.079  Score=49.26  Aligned_cols=33  Identities=18%  Similarity=0.358  Sum_probs=30.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .+|.|||+|..|.+.|..|++.  |.+|++++|.+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~--g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKT--GHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHT--TCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCh
Confidence            4699999999999999999999  89999999873

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=93.08  E-value=0.075  Score=47.83  Aligned_cols=33  Identities=27%  Similarity=0.454  Sum_probs=30.7

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ...|+|||+|-+|+..|..|.+.  |.+|+|++..
T Consensus        13 ~k~VLVVGgG~va~rka~~Ll~~--Ga~VtViap~   45 (274)
T 1kyq_A           13 DKRILLIGGGEVGLTRLYKLMPT--GCKLTLVSPD   45 (274)
T ss_dssp             TCEEEEEEESHHHHHHHHHHGGG--TCEEEEEEEE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhC--CCEEEEEcCC
Confidence            45799999999999999999999  9999999986

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=93.06  E-value=0.097  Score=51.65  Aligned_cols=34  Identities=29%  Similarity=0.499  Sum_probs=30.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .+|.|||.|..|+..|..|+++++|.+|+++|+.
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~   43 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMN   43 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            5799999999999999999998556899999986

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=92.94  E-value=0.07  Score=51.94  Aligned_cols=64  Identities=17%  Similarity=0.315  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCC--cEEEcCEEEEcCCcChHHHHHhcCCC
Q psy7710         205 LVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQG--DHLESSYALVCAGLQADEMALKSGCS  270 (473)
Q Consensus       205 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g--~~i~ad~VV~aaG~~s~~l~~~~g~~  270 (473)
                      ...+.+.+.++++|+++++++.|++++  ++++.++..+|  +++.+|.||+|+|...+.++..++..
T Consensus       201 ~~~~~l~~~l~~~GV~~~~~~~v~~v~--~~~~~~~~~~g~~~~i~~d~vi~~~G~~~~~~~~~~~~~  266 (430)
T 3hyw_A          201 ASKRLVEDLFAERNIDWIANVAVKAIE--PDKVIYEDLNGNTHEVPAKFTMFMPSFQGPEVVASAGDK  266 (430)
T ss_dssp             THHHHHHHHHHHTTCEEECSCEEEEEC--SSEEEEECTTSCEEEEECSEEEEECEEECCHHHHTTCTT
T ss_pred             HHHHHHHHHHHhCCeEEEeCceEEEEe--CCceEEEeeCCCceEeecceEEEeccCCCchHHHhcccc
Confidence            345567778889999999999999885  45566666554  57999999999998876777766543

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=92.87  E-value=0.11  Score=45.20  Aligned_cols=34  Identities=24%  Similarity=0.335  Sum_probs=30.9

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ....|+|||||-+|...|..|.+.  |.+|+|++..
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~--GA~VtVvap~   63 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQE--GAAITVVAPT   63 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGG--CCCEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEECCC
Confidence            345799999999999999999999  9999999875

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=92.77  E-value=0.083  Score=48.91  Aligned_cols=32  Identities=16%  Similarity=0.345  Sum_probs=29.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .+|.|||+|..|.+.|..|++.  |.+|++++|+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~--g~~V~~~~r~   34 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRS--GEDVHFLLRR   34 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHT--SCCEEEECST
T ss_pred             CEEEEECcCHHHHHHHHHHHHC--CCeEEEEEcC
Confidence            4699999999999999999999  8999999986

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=92.72  E-value=0.099  Score=52.39  Aligned_cols=33  Identities=15%  Similarity=0.160  Sum_probs=30.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .+++|||||.+|+-.|..+++.  |.+|+|+++..
T Consensus       224 ~~lvIIGgG~IGlE~A~~~~~l--G~~VTii~~~~  256 (542)
T 4b1b_A          224 GKTLVVGASYVALECSGFLNSL--GYDVTVAVRSI  256 (542)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHH--TCCEEEEESSC
T ss_pred             ceEEEECCCHHHHHHHHHHHhc--CCeEEEecccc
Confidence            4799999999999999999999  99999999863

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=92.71  E-value=0.11  Score=48.07  Aligned_cols=34  Identities=18%  Similarity=0.346  Sum_probs=30.6

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~~   92 (473)
                      ..+|.|||+|..|.+.|..|++.  |. +|+++|+..
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~--g~~~V~l~D~~~   38 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKD--NLADVVLFDIAE   38 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCceEEEEeCCc
Confidence            35799999999999999999999  77 999999863

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=92.64  E-value=0.12  Score=46.18  Aligned_cols=34  Identities=24%  Similarity=0.482  Sum_probs=28.8

Q ss_pred             CCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710           9 LYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK   44 (473)
Q Consensus         9 ~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~   44 (473)
                      ++|.+|||+|++|.++|..|+..  +.++.++++.+
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~--G~~V~v~Ek~~   35 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAA--GHQVHLFDKSR   35 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCC
Confidence            57999999999999999999854  67788887654

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=92.64  E-value=0.1  Score=51.40  Aligned_cols=33  Identities=18%  Similarity=0.327  Sum_probs=30.9

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      +++|.|||+|..|+.+|..|++.  |.+|+++|+.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~--G~~V~~~d~~   40 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADI--GHDVFCLDVD   40 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSC
T ss_pred             CceEEEECcCHHHHHHHHHHHhC--CCEEEEEECC
Confidence            46799999999999999999999  8999999986

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=92.55  E-value=0.11  Score=51.22  Aligned_cols=35  Identities=14%  Similarity=0.291  Sum_probs=31.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL   94 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~   94 (473)
                      .+|+|||+|.+|+.+|..|++.  |.+|+++++.+.+
T Consensus       177 ~~vvViGgG~~g~E~A~~l~~~--g~~Vtlv~~~~~~  211 (467)
T 1zk7_A          177 ERLAVIGSSVVALELAQAFARL--GSKVTVLARNTLF  211 (467)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHc--CCEEEEEEECCcc
Confidence            4699999999999999999999  8999999997543

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=92.53  E-value=0.11  Score=48.12  Aligned_cols=33  Identities=24%  Similarity=0.320  Sum_probs=30.2

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCC--eEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKM--KICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~--~V~viE~~   91 (473)
                      ..+|+|||+|..|.+.|..|++.  |.  +|+++|+.
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~--g~~~~V~l~d~~   41 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQR--GIAREIVLEDIA   41 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCCSEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEeCC
Confidence            35799999999999999999998  77  99999986

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=92.46  E-value=0.13  Score=50.35  Aligned_cols=33  Identities=24%  Similarity=0.171  Sum_probs=30.8

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ...|.|||.|.+|+++|..|+++  |.+|++.|+.
T Consensus         9 ~k~v~viG~G~sG~s~A~~l~~~--G~~V~~~D~~   41 (451)
T 3lk7_A            9 NKKVLVLGLARSGEAAARLLAKL--GAIVTVNDGK   41 (451)
T ss_dssp             TCEEEEECCTTTHHHHHHHHHHT--TCEEEEEESS
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhC--CCEEEEEeCC
Confidence            45799999999999999999999  9999999986

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=92.42  E-value=0.14  Score=44.26  Aligned_cols=34  Identities=12%  Similarity=0.307  Sum_probs=30.6

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ...|.|||+|..|.+.|..|++.  |.+|+++++.+
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~--g~~V~~~~~~~   52 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIA--GHEVTYYGSKD   52 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHT--TCEEEEECTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCH
Confidence            45799999999999999999999  89999999874

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=92.32  E-value=0.13  Score=48.56  Aligned_cols=33  Identities=27%  Similarity=0.261  Sum_probs=30.8

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ..+|.|||+|..|.+.|..|+++  |.+|+++++.
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~--G~~V~l~~r~   61 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARK--GQKVRLWSYE   61 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTT--TCCEEEECSC
T ss_pred             CCeEEEECccHHHHHHHHHHHHC--CCeEEEEeCC
Confidence            46799999999999999999999  8999999986

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=92.27  E-value=0.14  Score=47.75  Aligned_cols=32  Identities=16%  Similarity=0.355  Sum_probs=29.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      .+|.|||+|..|.++|+.|+..  |. +|+++|..
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~--g~~~V~L~Di~   47 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQK--DLGDVYMFDII   47 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCCeEEEEECC
Confidence            5799999999999999999999  77 99999986

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=92.17  E-value=0.14  Score=46.78  Aligned_cols=33  Identities=24%  Similarity=0.460  Sum_probs=30.4

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      +..|.|||+|..|...|..|+ +  |.+|+++|+.+
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-a--G~~V~v~d~~~   44 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-S--KHEVVLQDVSE   44 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-T--TSEEEEECSCH
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-c--CCEEEEEECCH
Confidence            567999999999999999999 8  99999999873

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=92.11  E-value=0.086  Score=51.68  Aligned_cols=34  Identities=26%  Similarity=0.460  Sum_probs=31.4

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .++|+|+|+|-.|.++|..|.+.  |.+|+|||+++
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~--~~~v~vId~d~   36 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGE--NNDITIVDKDG   36 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCST--TEEEEEEESCH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHC--CCCEEEEECCH
Confidence            46799999999999999999998  89999999874

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=92.11  E-value=0.13  Score=47.42  Aligned_cols=32  Identities=16%  Similarity=0.327  Sum_probs=29.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .+|.|||+|..|...|..|++.  |.+|+++++.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~r~   35 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQG--GNDVTLIDQW   35 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhC--CCcEEEEECC
Confidence            4699999999999999999999  8999999986

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=92.10  E-value=0.19  Score=46.35  Aligned_cols=35  Identities=23%  Similarity=0.364  Sum_probs=31.5

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ...+|.|||.|..|...|..|++.  |.+|+++++.+
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~--G~~V~~~dr~~   42 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQ--GKRVAIWNRSP   42 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence            346799999999999999999999  89999999863

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=92.09  E-value=0.098  Score=47.94  Aligned_cols=32  Identities=28%  Similarity=0.463  Sum_probs=30.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .+|.|||+|..|.+.|..|++.  |.+|++++|.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~--g~~V~~~~r~   34 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQS--LPHTTLIGRH   34 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHH--CTTCEEEESS
T ss_pred             cEEEEECCCHHHHHHHHHHHHC--CCeEEEEEec
Confidence            4699999999999999999999  8899999987

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=92.09  E-value=0.14  Score=47.94  Aligned_cols=32  Identities=25%  Similarity=0.369  Sum_probs=29.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .+|.|||+|..|.+.|..|++.  |.+|+++++.
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~--g~~V~~~~r~   35 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALA--GEAINVLARG   35 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHT--TCCEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHC--CCEEEEEECh
Confidence            4799999999999999999999  8999999985

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=92.02  E-value=0.082  Score=50.40  Aligned_cols=36  Identities=39%  Similarity=0.525  Sum_probs=30.3

Q ss_pred             CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710           7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK   44 (473)
Q Consensus         7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~   44 (473)
                      |..||.+|||+|++|.++|..|+..  +.++.++++.+
T Consensus         2 Me~yDViIVGaGpaGl~~A~~La~~--G~~V~v~Er~~   37 (397)
T 3oz2_A            2 METYDVLVVGGGPGGSTAARYAAKY--GLKTLMIEKRP   37 (397)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCC
Confidence            4569999999999999999999854  67888888754

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=91.98  E-value=0.14  Score=46.57  Aligned_cols=32  Identities=16%  Similarity=0.103  Sum_probs=29.7

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      +|.|||+|..|...|..|++.  |.+|+++++.+
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~r~~   33 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQ--GHEVQGWLRVP   33 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCEEEEECSSC
T ss_pred             eEEEECcCHHHHHHHHHHHhC--CCCEEEEEcCc
Confidence            589999999999999999999  89999999874

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=91.91  E-value=0.19  Score=46.42  Aligned_cols=33  Identities=30%  Similarity=0.444  Sum_probs=30.3

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      ..+|.|||+|..|.++|+.|+..  |. +|+++|..
T Consensus         8 ~~kv~ViGaG~vG~~ia~~l~~~--g~~~v~l~D~~   41 (315)
T 3tl2_A            8 RKKVSVIGAGFTGATTAFLLAQK--ELADVVLVDIP   41 (315)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCCEEEEECCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCCeEEEEecc
Confidence            45799999999999999999998  78 99999986

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=91.76  E-value=0.15  Score=45.31  Aligned_cols=33  Identities=24%  Similarity=0.343  Sum_probs=30.2

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      ...|+|||+|-.|..+|..|++.  |. +++|+|++
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~--Gv~~i~lvD~d   64 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASA--GVGNLTLLDFD   64 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHH--TCSEEEEECCC
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHc--CCCeEEEEcCC
Confidence            35799999999999999999999  75 89999987

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=91.75  E-value=0.16  Score=46.78  Aligned_cols=31  Identities=39%  Similarity=0.576  Sum_probs=28.9

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCC--eEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKM--KICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~--~V~viE~~   91 (473)
                      +|+|||+|..|.++|+.|+..  |.  +|+++|..
T Consensus         2 kI~VIGaG~vG~~la~~la~~--g~~~eV~L~D~~   34 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLR--GSCSELVLVDRD   34 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhC--CCCCEEEEEeCC
Confidence            599999999999999999998  77  99999986

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=91.65  E-value=0.19  Score=46.67  Aligned_cols=33  Identities=21%  Similarity=0.401  Sum_probs=29.8

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      ..+|.|||+|..|..+|..|+..  |. +|+++|..
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~--g~~~v~L~Di~   37 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQK--NLGDVVLFDIV   37 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCCeEEEEeCC
Confidence            35799999999999999999998  76 89999976

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=91.64  E-value=0.2  Score=46.28  Aligned_cols=35  Identities=26%  Similarity=0.367  Sum_probs=31.7

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ...+|.|||.|..|...|..|++.  |.+|+++++.+
T Consensus        20 ~m~~I~iIG~G~mG~~~A~~l~~~--G~~V~~~dr~~   54 (310)
T 3doj_A           20 HMMEVGFLGLGIMGKAMSMNLLKN--GFKVTVWNRTL   54 (310)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSG
T ss_pred             cCCEEEEECccHHHHHHHHHHHHC--CCeEEEEeCCH
Confidence            346799999999999999999999  89999999873

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=91.54  E-value=0.2  Score=48.38  Aligned_cols=34  Identities=24%  Similarity=0.292  Sum_probs=31.4

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .+..|.|||.|..|+.+|..|+++  |.+|+.+|-+
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~--G~~V~g~Did   53 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALL--GHRVVGYDVN   53 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHH--TCEEEEECSC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhC--CCcEEEEECC
Confidence            456899999999999999999999  9999999976

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=91.53  E-value=0.16  Score=49.56  Aligned_cols=33  Identities=24%  Similarity=0.413  Sum_probs=30.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ++|.|||+|..|+.+|..|+++  |.+|+++|+.+
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~--G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAEL--GANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhc--CCEEEEEECCH
Confidence            4799999999999999999999  89999999873

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=91.53  E-value=0.17  Score=46.62  Aligned_cols=31  Identities=26%  Similarity=0.447  Sum_probs=29.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ++|+|||+|..|...|..|+ .  |.+|++++|.
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~--g~~V~~~~r~   33 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-L--YHDVTVVTRR   33 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-T--TSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHh-c--CCceEEEECC
Confidence            57999999999999999999 8  8999999987

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=91.34  E-value=0.18  Score=47.52  Aligned_cols=32  Identities=25%  Similarity=0.171  Sum_probs=29.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .+|.|||+|..|...|..|++.  |.+|+++++.
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~--g~~V~~~~r~   36 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDID   36 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhC--CCEEEEEeCC
Confidence            5799999999999999999999  8999999986

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=91.29  E-value=0.19  Score=49.31  Aligned_cols=34  Identities=21%  Similarity=0.462  Sum_probs=30.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .+|.|||.|..|+..|..|++.++|.+|+++++.
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~   39 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVN   39 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            5799999999999999999998556899999986

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=91.22  E-value=0.2  Score=47.15  Aligned_cols=34  Identities=32%  Similarity=0.482  Sum_probs=31.3

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      .+.+|+|+|||.+|+.+|..|...  |. +|+++|+.
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~--Ga~~I~v~D~~  221 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAA--GATKVTVVDKF  221 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHH--TCCEEEEEETT
T ss_pred             CccEEEEECCCHHHHHHHHHHHHc--CCCeEEEEECC
Confidence            457899999999999999999999  88 99999997

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=90.97  E-value=0.22  Score=48.38  Aligned_cols=34  Identities=18%  Similarity=0.326  Sum_probs=31.5

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      +..+.|||.|..|+.+|..|+++  |.+|+++++++
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~--G~~V~~~D~~~   41 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDF--GHEVVCVDKDA   41 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCS
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence            46799999999999999999999  99999999874

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=90.94  E-value=0.24  Score=45.74  Aligned_cols=34  Identities=26%  Similarity=0.388  Sum_probs=29.7

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      +|+|||+|..|.++|..|++.+.+.+|+++|+..
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            5999999999999999999853368999999873

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=90.92  E-value=0.22  Score=46.59  Aligned_cols=33  Identities=24%  Similarity=0.285  Sum_probs=30.7

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .++|.|||+|..|...|..|+++  |.+|+++++.
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~--G~~V~~~~r~   46 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHEN--GEEVILWARR   46 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHhC--CCeEEEEeCC
Confidence            46899999999999999999999  8999999986

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=90.91  E-value=0.22  Score=46.17  Aligned_cols=35  Identities=17%  Similarity=0.256  Sum_probs=31.6

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ...+|.|||.|..|...|..|++.  |.+|+++++.+
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~--G~~V~~~dr~~   64 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEA--GYALQVWNRTP   64 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHT--TCEEEEECSCH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhC--CCeEEEEcCCH
Confidence            346899999999999999999999  89999999873

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=90.90  E-value=0.19  Score=49.30  Aligned_cols=32  Identities=25%  Similarity=0.302  Sum_probs=30.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ..|.|||+|..|...|..|+++  |.+|+++|+.
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~--G~~V~l~D~~   69 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARV--GISVVAVESD   69 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT--TCEEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhC--CCeEEEEECC
Confidence            4699999999999999999999  8999999986

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=90.90  E-value=0.24  Score=43.90  Aligned_cols=35  Identities=20%  Similarity=0.261  Sum_probs=31.2

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ....|.|||+|..|.+.|..|++.  |.+|+++++.+
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~--G~~V~~~~r~~   52 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADL--GHEVTIGTRDP   52 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCh
Confidence            346799999999999999999999  89999999873

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=90.77  E-value=0.21  Score=49.85  Aligned_cols=35  Identities=23%  Similarity=0.297  Sum_probs=31.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL   94 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~   94 (473)
                      .+++|||+|.+|+.+|..|++.  |.+|+++++.+.+
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~--G~~Vtlv~~~~~~  249 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNAT--GRRTVMLVRTEPL  249 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHHc--CCeEEEEEecCcc
Confidence            5799999999999999999999  8999999998543

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=90.69  E-value=0.23  Score=46.06  Aligned_cols=33  Identities=21%  Similarity=0.296  Sum_probs=28.8

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ...+|.|||+|..|...|..|++.  |.+|+++ +.
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~--G~~V~l~-~~   50 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARA--GHEVILI-AR   50 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHT--TCEEEEE-CC
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHC--CCeEEEE-Ec
Confidence            346799999999999999999999  8999999 65

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=90.68  E-value=0.11  Score=41.81  Aligned_cols=32  Identities=16%  Similarity=0.395  Sum_probs=29.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ..|+|||+|..|...|..|++.  |.+|+++++.
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~--g~~v~v~~r~   53 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYP--QYKVTVAGRN   53 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTT--TCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCC
Confidence            4599999999999999999987  8889999986

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=90.64  E-value=0.2  Score=45.94  Aligned_cols=34  Identities=12%  Similarity=0.095  Sum_probs=31.2

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ..+|.|||.|..|...|..|++.  |.+|+++++.+
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~--G~~V~~~dr~~   48 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEW--PGGVTVYDIRI   48 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTS--TTCEEEECSST
T ss_pred             CCeEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCH
Confidence            35799999999999999999999  89999999874

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=90.64  E-value=0.25  Score=42.77  Aligned_cols=33  Identities=18%  Similarity=0.203  Sum_probs=29.7

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ...|.|||+|..|...|..|++.  |.+|+++++.
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~--g~~V~~~~r~   60 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGS--GFKVVVGSRN   60 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred             CCEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCC
Confidence            35799999999999999999998  8899999986

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=90.58  E-value=0.25  Score=45.43  Aligned_cols=33  Identities=21%  Similarity=0.250  Sum_probs=30.7

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ..+|.|||.|..|...|..|++.  |.+|+++++.
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~--G~~V~~~dr~   39 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRA--GLSTWGADLN   39 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC--CCeEEEEECC
Confidence            35799999999999999999999  8999999986

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=90.56  E-value=0.2  Score=48.68  Aligned_cols=31  Identities=23%  Similarity=0.275  Sum_probs=29.3

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      +|.|||+|..|+..|..|++.  |.+|+++++.
T Consensus         2 kI~VIG~G~vG~~~A~~la~~--G~~V~~~d~~   32 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSAR--GHEVIGVDVS   32 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT--TCEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHHC--CCEEEEEECC
Confidence            589999999999999999999  8999999986

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=90.52  E-value=0.26  Score=46.40  Aligned_cols=34  Identities=24%  Similarity=0.239  Sum_probs=31.0

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      .+..|+|+|||.+|..+|..|...  |. +|+++|+.
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~--G~~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDL--GVKNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHH--TCCEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhC--CCCeEEEEECC
Confidence            457899999999999999999999  77 89999997

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=90.47  E-value=0.26  Score=44.87  Aligned_cols=33  Identities=21%  Similarity=0.311  Sum_probs=30.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .+|.|||.|..|...|..|++.  |.+|+++++.+
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~--G~~V~~~dr~~   34 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKA--GCSVTIWNRSP   34 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSG
T ss_pred             CEEEEEeecHHHHHHHHHHHHC--CCeEEEEcCCH
Confidence            3699999999999999999999  89999999874

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=90.37  E-value=0.27  Score=48.73  Aligned_cols=37  Identities=27%  Similarity=0.391  Sum_probs=31.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCC-CCeEEEEeccCcc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYP-KMKICLVEKEKEL   94 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~-G~~V~viE~~~~~   94 (473)
                      ..++|||+|.+|+.+|..|++..+ |.+|+++++.+.+
T Consensus       192 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~  229 (495)
T 2wpf_A          192 RRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLI  229 (495)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCcc
Confidence            469999999999999999988733 6899999998543

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=90.24  E-value=0.26  Score=47.42  Aligned_cols=34  Identities=24%  Similarity=0.350  Sum_probs=31.1

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ...|+|||.|-.|..+|..|.+.  |.+|++||+++
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~--g~~vvvId~d~   37 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSS--GVKMVVLDHDP   37 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT--TCCEEEEECCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC--CCCEEEEECCH
Confidence            35699999999999999999999  99999999874

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=90.20  E-value=0.29  Score=45.29  Aligned_cols=34  Identities=29%  Similarity=0.422  Sum_probs=30.0

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCC--eEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKM--KICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~--~V~viE~~   91 (473)
                      ...+|+|||+|.+|.++|+.|+..  +.  +++++|..
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~--~~~~el~l~D~~   43 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQ--GIAQEIGIVDIF   43 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC--CCCCeEEEEeCC
Confidence            346799999999999999999998  65  89999975

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=90.20  E-value=0.25  Score=46.09  Aligned_cols=30  Identities=23%  Similarity=0.265  Sum_probs=28.6

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEec
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEK   90 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~   90 (473)
                      +|.|||+|..|...|..|++.  |.+|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~--g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDN--GNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHH--CCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhC--CCeEEEEEc
Confidence            589999999999999999999  899999998

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=90.07  E-value=0.26  Score=45.65  Aligned_cols=31  Identities=29%  Similarity=0.490  Sum_probs=28.8

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCC--eEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKM--KICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~--~V~viE~~   91 (473)
                      +|.|||+|..|.+.|..|++.  |.  +|+++|+.
T Consensus         2 kI~VIGaG~~G~~la~~l~~~--g~~~~V~l~D~~   34 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMK--GFAREMVLIDVD   34 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhC--CCCCeEEEEeCC
Confidence            589999999999999999999  77  99999986

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=90.03  E-value=0.31  Score=45.15  Aligned_cols=33  Identities=24%  Similarity=0.481  Sum_probs=29.9

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCC--eEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKM--KICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~--~V~viE~~   91 (473)
                      ..+|+|||+|..|.++|+.|+..  +.  +|+++|..
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~--~~~~ev~L~Di~   41 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALR--QTANELVLIDVF   41 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHT--TCSSEEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEeCC
Confidence            46899999999999999999998  65  89999976

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=90.03  E-value=0.32  Score=45.09  Aligned_cols=33  Identities=21%  Similarity=0.437  Sum_probs=29.6

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCC--eEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKM--KICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~--~V~viE~~   91 (473)
                      ..+|.|||+|..|.++|+.|+..  |.  +|+++|..
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~--~~~~~l~l~D~~   39 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQ--GITDELVVIDVN   39 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCCceEEEEecc
Confidence            45799999999999999999998  65  89999975

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=89.97  E-value=0.18  Score=50.62  Aligned_cols=35  Identities=37%  Similarity=0.543  Sum_probs=30.5

Q ss_pred             CCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccc
Q psy7710           8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE   45 (473)
Q Consensus         8 ~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~   45 (473)
                      ..||++|||+|++|+++|.+|+.   +.++.++|+.+.
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse---g~~VlvLEaG~~   59 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE---KYKVLVLERGSL   59 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT---TSCEEEECSSBC
T ss_pred             CcccEEEECccHHHHHHHHHHhc---CCcEEEEecCCC
Confidence            45999999999999999999995   578988988754

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=89.91  E-value=0.36  Score=44.65  Aligned_cols=35  Identities=29%  Similarity=0.317  Sum_probs=29.4

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ..+|+|||+|..|.+.|+.|+..+...+|+++|..
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~   40 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            45899999999999999999988322389999986

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=89.82  E-value=0.27  Score=48.42  Aligned_cols=33  Identities=21%  Similarity=0.324  Sum_probs=30.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ..|.|||+|..|...|..|+++  |.+|+++|+.+
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~a--G~~V~l~D~~~   38 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASH--GHQVLLYDISA   38 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT--TCCEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHHC--CCeEEEEECCH
Confidence            4699999999999999999999  89999999873

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=89.80  E-value=0.33  Score=47.34  Aligned_cols=37  Identities=27%  Similarity=0.470  Sum_probs=28.6

Q ss_pred             CCCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710           6 SPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK   44 (473)
Q Consensus         6 ~~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~   44 (473)
                      ..+.||.+|||+|++|.++|..++..  +.++.++++.+
T Consensus        23 ~~~~~dVvIIGgG~aGl~aA~~la~~--G~~V~llEk~~   59 (447)
T 2i0z_A           23 NAMHYDVIVIGGGPSGLMAAIGAAEE--GANVLLLDKGN   59 (447)
T ss_dssp             --CCCSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred             ccCCCCEEEECCcHHHHHHHHHHHHC--CCCEEEEECCC
Confidence            34569999999999999999998854  56777777553

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=89.71  E-value=0.34  Score=41.75  Aligned_cols=31  Identities=23%  Similarity=0.287  Sum_probs=28.8

Q ss_pred             cEEEEc-CChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          59 DVVVVG-GGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        59 dVvIIG-aGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      +|+||| +|..|...|..|++.  |.+|+++++.
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~--g~~V~~~~r~   33 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATL--GHEIVVGSRR   33 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTT--TCEEEEEESS
T ss_pred             eEEEEcCCCHHHHHHHHHHHHC--CCEEEEEeCC
Confidence            589999 999999999999998  8999999986

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=89.63  E-value=0.31  Score=44.50  Aligned_cols=31  Identities=35%  Similarity=0.397  Sum_probs=28.6

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCC--eEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKM--KICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~--~V~viE~~   91 (473)
                      +|.|||+|..|.++|+.|++.  +.  +|+++|..
T Consensus         2 kI~ViGaG~vG~~la~~l~~~--~~~~~v~L~D~~   34 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLN--LDVDEIALVDIA   34 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH--SCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhC--CCCCeEEEEECC
Confidence            599999999999999999998  66  89999986

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=89.62  E-value=0.2  Score=48.74  Aligned_cols=33  Identities=15%  Similarity=0.300  Sum_probs=30.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ..|.|||.|.+|+++|..|+++  |.+|++.|...
T Consensus         6 ~~v~viG~G~~G~~~a~~l~~~--G~~v~~~D~~~   38 (439)
T 2x5o_A            6 KNVVIIGLGLTGLSCVDFFLAR--GVTPRVMDTRM   38 (439)
T ss_dssp             CCEEEECCHHHHHHHHHHHHTT--TCCCEEEESSS
T ss_pred             CEEEEEeecHHHHHHHHHHHhC--CCEEEEEECCC
Confidence            4699999999999999999999  99999999874

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=89.57  E-value=0.34  Score=49.90  Aligned_cols=42  Identities=17%  Similarity=0.169  Sum_probs=36.0

Q ss_pred             CcEEEeCceEEEEEEcCCeEEEEcCC------CcEEEcCEEEEcCCcC
Q psy7710         218 GGEIRLNQQVESFKENPESVTISTKQ------GDHLESSYALVCAGLQ  259 (473)
Q Consensus       218 Gv~i~~~~~V~~i~~~~~~v~v~~~~------g~~i~ad~VV~aaG~~  259 (473)
                      +++|+++++|++|..+++++.|++.+      +.+++||+||+|+...
T Consensus       410 ~l~I~l~~~V~~I~~~~~~v~V~~~~~~~~~~~~~~~Ad~VI~tvP~~  457 (662)
T 2z3y_A          410 GLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLG  457 (662)
T ss_dssp             TCEEETTEEEEEEEEETTEEEEEEEESSCTTCEEEEEESEEEECCCHH
T ss_pred             cCceecCCeEEEEEECCCcEEEEEeecccCCCCeEEEeCEEEECCCHH
Confidence            67999999999999998888887654      4579999999999744

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=89.55  E-value=0.34  Score=40.62  Aligned_cols=35  Identities=23%  Similarity=0.321  Sum_probs=29.6

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ...|+|||+|..|..+|..|.+.. |.+|+++|+++
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~-g~~V~vid~~~   73 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARY-GKISLGIEIRE   73 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHH-CSCEEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcc-CCeEEEEECCH
Confidence            347999999999999999998751 47999999873

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=89.52  E-value=0.34  Score=44.61  Aligned_cols=32  Identities=28%  Similarity=0.505  Sum_probs=29.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      .+|.|||+|..|..+|+.|+..  |. +|+++|..
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~--g~~~v~L~Di~   35 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAK--ELGDIVLLDIV   35 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCCeEEEEeCC
Confidence            4699999999999999999998  65 89999976

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=89.50  E-value=0.37  Score=44.65  Aligned_cols=34  Identities=18%  Similarity=0.423  Sum_probs=30.4

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~~   92 (473)
                      ..+|.|||+|..|.++|+.|+..  +. +|+++|...
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~~--~~~~v~L~Di~~   41 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGLK--ELGDVVLFDIAE   41 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCCeEEEEeCCc
Confidence            45799999999999999999998  67 999999863

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=89.47  E-value=0.34  Score=45.63  Aligned_cols=34  Identities=15%  Similarity=0.250  Sum_probs=31.2

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ..+|.|||.|..|...|..|++.  |.+|+++++.+
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~--G~~V~v~dr~~   55 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKG--GHECVVYDLNV   55 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCH
T ss_pred             CCEEEEECchHHHHHHHHHHHhC--CCEEEEEeCCH
Confidence            46799999999999999999999  89999999863

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=89.43  E-value=0.29  Score=44.56  Aligned_cols=32  Identities=19%  Similarity=0.253  Sum_probs=29.9

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      +|.|||.|..|...|..|++.  |.+|+++++.+
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~--G~~V~~~dr~~   34 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRA--GFDVTVWNRNP   34 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHH--TCCEEEECSSG
T ss_pred             eEEEEccCHHHHHHHHHHHHC--CCeEEEEcCCH
Confidence            599999999999999999999  89999999874

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=89.34  E-value=0.25  Score=46.83  Aligned_cols=40  Identities=28%  Similarity=0.439  Sum_probs=32.4

Q ss_pred             CCCCCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccccc
Q psy7710           4 SQSPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEF   46 (473)
Q Consensus         4 ~~~~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~   46 (473)
                      ....+++|++|||+|++|+++|..|+ .  +.++.++++.+..
T Consensus         4 ~~~~~~~dv~IIGaGi~Gls~A~~La-~--G~~V~vlE~~~~~   43 (381)
T 3nyc_A            4 HHHPIEADYLVIGAGIAGASTGYWLS-A--HGRVVVLEREAQP   43 (381)
T ss_dssp             CEEEEECSEEEECCSHHHHHHHHHHT-T--TSCEEEECSSSST
T ss_pred             cCCCCcCCEEEECCcHHHHHHHHHHh-C--CCCEEEEECCCCc
Confidence            34456799999999999999999998 4  6788888876433

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=89.34  E-value=0.38  Score=43.33  Aligned_cols=32  Identities=9%  Similarity=0.197  Sum_probs=29.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ..++|+|+|-+|.++|..|++.  |.+|++++|.
T Consensus       120 k~vlViGaGg~g~a~a~~L~~~--G~~V~v~~R~  151 (271)
T 1nyt_A          120 LRILLIGAGGASRGVLLPLLSL--DCAVTITNRT  151 (271)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSS
T ss_pred             CEEEEECCcHHHHHHHHHHHHc--CCEEEEEECC
Confidence            4699999999999999999999  8999999886

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=89.32  E-value=0.34  Score=44.65  Aligned_cols=32  Identities=22%  Similarity=0.322  Sum_probs=29.2

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCC--CeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPK--MKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G--~~V~viE~~   91 (473)
                      .+|.|||+|..|.++|..|+++  |  .+|+++|+.
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~--g~~~~V~l~d~~   35 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQ--GVADDYVFIDAN   35 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEcCC
Confidence            3699999999999999999999  7  699999986

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=89.27  E-value=0.45  Score=43.95  Aligned_cols=34  Identities=12%  Similarity=0.157  Sum_probs=30.7

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ...|.|||+|..|...|..|++.  |.+|+++++.+
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~--g~~V~~~~~~~   63 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKM--GHTVTVWNRTA   63 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHT--TCCEEEECSSG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhC--CCEEEEEeCCH
Confidence            35799999999999999999998  88999999863

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=89.23  E-value=0.45  Score=43.95  Aligned_cols=33  Identities=27%  Similarity=0.441  Sum_probs=30.2

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCC--eEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKM--KICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~--~V~viE~~   91 (473)
                      ...|.|||.|..|.+.|..|++.  |.  +|+++++.
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~--G~~~~V~~~dr~   67 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRS--GFKGKIYGYDIN   67 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHT--TCCSEEEEECSC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhC--CCCCEEEEEECC
Confidence            35799999999999999999999  77  99999986

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=89.19  E-value=0.34  Score=46.46  Aligned_cols=34  Identities=18%  Similarity=0.266  Sum_probs=30.4

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ...|+|||+|.+|+.+|..|...  |.+|+++|+.+
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~--Ga~V~v~D~~~  205 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSL--GAIVRAFDTRP  205 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCH
Confidence            35799999999999999999988  89999999863

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=89.18  E-value=0.35  Score=45.65  Aligned_cols=32  Identities=25%  Similarity=0.411  Sum_probs=29.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ..|+|+|+|.+|+.++..|+..  |.+|+++++.
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~--Ga~V~v~dr~  199 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGL--GAQVQIFDIN  199 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCC
Confidence            5799999999999999999999  8899999986

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=89.17  E-value=0.52  Score=43.59  Aligned_cols=33  Identities=27%  Similarity=0.455  Sum_probs=29.8

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCC--eEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKM--KICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~--~V~viE~~   91 (473)
                      ..+|.|||+|..|.++|+.|+..  |.  +|+++|..
T Consensus        21 ~~kV~ViGaG~vG~~~a~~la~~--g~~~ev~L~Di~   55 (330)
T 3ldh_A           21 YNKITVVGCDAVGMADAISVLMK--DLADEVALVDVM   55 (330)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHHH--CCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCCCeEEEEECC
Confidence            46899999999999999999998  66  89999975

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=89.17  E-value=0.41  Score=44.42  Aligned_cols=36  Identities=28%  Similarity=0.312  Sum_probs=29.8

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .+.+|+|||+|-+|.++|+.|+..+-...++++|..
T Consensus         8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~   43 (326)
T 2zqz_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            457899999999999999999988222389999975

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=89.13  E-value=0.14  Score=44.85  Aligned_cols=33  Identities=15%  Similarity=0.119  Sum_probs=30.2

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ..+|.|||.|..|.+.|..|+++  |.+|+.+++.
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~--G~~V~~~~~~   38 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSV--GHYVTVLHAP   38 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHT--TCEEEECSSG
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHC--CCEEEEecCH
Confidence            45799999999999999999999  8999999874

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=89.12  E-value=0.38  Score=47.57  Aligned_cols=37  Identities=16%  Similarity=0.226  Sum_probs=31.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCC-CCeEEEEeccCcc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYP-KMKICLVEKEKEL   94 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~-G~~V~viE~~~~~   94 (473)
                      .+++|||+|.+|+.+|..|++..+ |.+|+++++.+.+
T Consensus       188 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~  225 (490)
T 1fec_A          188 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI  225 (490)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCc
Confidence            479999999999999999988632 6899999998643

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=89.09  E-value=0.39  Score=44.60  Aligned_cols=34  Identities=12%  Similarity=0.088  Sum_probs=29.9

Q ss_pred             cccEEEEcCChHHHH-HHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVA-TARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~-~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ...|.|||.|.+|++ +|..|.++  |.+|++.|+..
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~--G~~V~~~D~~~   38 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEA--GFEVSGCDAKM   38 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHT--TCEEEEEESSC
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhC--CCEEEEEcCCC
Confidence            346999999999997 78889999  99999999863

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=89.09  E-value=0.4  Score=43.36  Aligned_cols=33  Identities=15%  Similarity=0.176  Sum_probs=30.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ..|+|.|+|..|..++..|.++  |.+|+++.|.+
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~--g~~V~~~~r~~   38 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQ--GWRIIGTSRNP   38 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGG--TCEEEEEESCG
T ss_pred             CcEEEECCcHHHHHHHHHHHHC--CCEEEEEEcCh
Confidence            5799999999999999999999  89999999863

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=89.08  E-value=0.35  Score=44.24  Aligned_cols=33  Identities=15%  Similarity=0.176  Sum_probs=30.1

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ..+|.|||+|..|...|..|++.  |.+|+++++.
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~~~   36 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKE--GVTVYAFDLM   36 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHT--TCEEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHC--CCeEEEEeCC
Confidence            35799999999999999999998  8999999986

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=89.07  E-value=0.39  Score=44.45  Aligned_cols=33  Identities=12%  Similarity=0.106  Sum_probs=30.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCC-CeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPK-MKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G-~~V~viE~~~   92 (473)
                      ..|.|||.|..|...|..|++.  | .+|+++++.+
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~--G~~~V~~~dr~~   58 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGR--NAARLAAYDLRF   58 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT--TCSEEEEECGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHc--CCCeEEEEeCCC
Confidence            5699999999999999999999  8 9999999873

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=89.00  E-value=0.34  Score=44.73  Aligned_cols=33  Identities=15%  Similarity=0.158  Sum_probs=30.1

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      ...|.|||.|..|...|..|++.  |. +|+++++.
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~--G~~~V~~~dr~   57 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQA--GAIDMAAYDAA   57 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHH--SCCEEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHC--CCCeEEEEcCC
Confidence            46799999999999999999999  88 99999985

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=88.99  E-value=0.38  Score=44.14  Aligned_cols=34  Identities=24%  Similarity=0.559  Sum_probs=29.9

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCC--eEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKM--KICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~--~V~viE~~~   92 (473)
                      ..+|.|||+|..|..+|+.|+.+  |.  +|+++|...
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~--g~~~ev~L~Di~~   49 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAK--GIADRLVLLDLSE   49 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc--CCCCEEEEEcCCc
Confidence            35799999999999999999998  66  999999873

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=88.94  E-value=0.4  Score=42.99  Aligned_cols=34  Identities=21%  Similarity=0.383  Sum_probs=30.8

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ...++|||+|-+|.++|+.|++.  |.+|+|+.|..
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~--G~~v~V~nRt~  151 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQ--GLQVSVLNRSS  151 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence            45799999999999999999999  89999999873

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=88.76  E-value=0.52  Score=43.89  Aligned_cols=37  Identities=30%  Similarity=0.469  Sum_probs=30.9

Q ss_pred             CCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710           8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK   44 (473)
Q Consensus         8 ~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~   44 (473)
                      ..||.+|||+|.+|.++|..++...++.++.+++...
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~  114 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGV  114 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSS
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            3589999999999999999998655677888887664

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=88.75  E-value=0.4  Score=47.02  Aligned_cols=35  Identities=26%  Similarity=0.415  Sum_probs=31.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKEL   94 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~   94 (473)
                      .+++|||+|.+|+.+|..|++.  |.+|+++++.+.+
T Consensus       171 ~~v~ViGgG~~g~e~A~~l~~~--g~~Vt~v~~~~~~  205 (463)
T 4dna_A          171 ESILIAGGGYIAVEFANIFHGL--GVKTTLIYRGKEI  205 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHc--CCeEEEEEcCCcc
Confidence            4799999999999999999999  8999999998543

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=88.73  E-value=0.49  Score=44.53  Aligned_cols=35  Identities=23%  Similarity=0.439  Sum_probs=29.3

Q ss_pred             CCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710           8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK   44 (473)
Q Consensus         8 ~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~   44 (473)
                      +++|.+|||+|++|+++|..++..  +.++.++++..
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~~--G~~V~vle~~~   39 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILARK--GYSVHILARDL   39 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhC--CCEEEEEeccC
Confidence            468999999999999999999854  56787887654

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=88.66  E-value=0.4  Score=42.88  Aligned_cols=31  Identities=26%  Similarity=0.432  Sum_probs=28.9

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCC-CeEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPK-MKICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G-~~V~viE~~   91 (473)
                      .|.|||+|..|...|..|++.  | .+|+++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~--g~~~v~~~~r~   33 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQ--GGYRIYIANRG   33 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH--CSCEEEEECSS
T ss_pred             EEEEECchHHHHHHHHHHHHC--CCCeEEEECCC
Confidence            589999999999999999999  8 899999986

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=88.56  E-value=0.35  Score=46.46  Aligned_cols=36  Identities=36%  Similarity=0.484  Sum_probs=31.2

Q ss_pred             CCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710           9 LYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK   44 (473)
Q Consensus         9 ~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~   44 (473)
                      ++|.+|||+|++|+++|..|+...|+.++.++++..
T Consensus        36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~   71 (405)
T 3c4n_A           36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGG   71 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSC
T ss_pred             cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            489999999999999999999776778888887653

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=88.56  E-value=0.27  Score=46.49  Aligned_cols=31  Identities=29%  Similarity=0.432  Sum_probs=29.4

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      +|.|||+|..|.+.|..|++.  |.+|+++++.
T Consensus        17 kI~iIG~G~mG~~la~~L~~~--G~~V~~~~r~   47 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKK--CREVCVWHMN   47 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTT--EEEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHhC--CCEEEEEECC
Confidence            799999999999999999998  8999999986

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=88.54  E-value=0.48  Score=46.48  Aligned_cols=40  Identities=30%  Similarity=0.545  Sum_probs=33.2

Q ss_pred             CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccccc
Q psy7710           7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEF   46 (473)
Q Consensus         7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~   46 (473)
                      ++++|.+|||+|++|.++|..|....|+.++.++++.+..
T Consensus         2 m~~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~   41 (475)
T 3lov_A            2 MSSKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERL   41 (475)
T ss_dssp             CCSCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSS
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence            3578999999999999999999977655788888876543

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=88.48  E-value=0.43  Score=43.08  Aligned_cols=31  Identities=26%  Similarity=0.410  Sum_probs=28.8

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .|.|||+|..|.+.|..|++.  |.+|+++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~~~   32 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQ   32 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCEEEEECSC
T ss_pred             EEEEEcCcHHHHHHHHHHHHC--CCEEEEEECC
Confidence            589999999999999999998  8899999886

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=88.48  E-value=0.48  Score=43.85  Aligned_cols=34  Identities=18%  Similarity=0.351  Sum_probs=30.1

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~~   92 (473)
                      ..+|.|||+|..|.++|+.|+..  +. +|+++|..+
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~--~~~~v~l~Di~~   39 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIK--QLGDVVLFDIAQ   39 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCceEEEEeCCh
Confidence            35799999999999999999998  66 999999863

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=88.38  E-value=0.42  Score=44.01  Aligned_cols=32  Identities=25%  Similarity=0.486  Sum_probs=28.8

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCC--eEEEEeccC
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKM--KICLVEKEK   92 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~--~V~viE~~~   92 (473)
                      +|.|||+|..|.++|+.|+..  +.  +|+++|..+
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~--~~~~el~l~D~~~   35 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQ--DVAKEVVMVDIKD   35 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH--TCSSEEEEECSST
T ss_pred             EEEEECCCHHHHHHHHHHHhC--CCCCEEEEEeCch
Confidence            599999999999999999998  65  899999863

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=88.37  E-value=0.48  Score=43.77  Aligned_cols=35  Identities=23%  Similarity=0.295  Sum_probs=29.3

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ..+|+|||+|-+|.++|+.|+..+....|.++|..
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~   40 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD   40 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            46899999999999999999988211489999875

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=88.35  E-value=0.56  Score=43.49  Aligned_cols=34  Identities=29%  Similarity=0.475  Sum_probs=30.1

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCC--eEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKM--KICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~--~V~viE~~   91 (473)
                      ...+|.|||+|..|.++|+.|+.+  |.  +++++|..
T Consensus        18 ~~~kV~ViGaG~vG~~~a~~l~~~--~~~~el~L~Di~   53 (331)
T 4aj2_A           18 PQNKITVVGVGAVGMACAISILMK--DLADELALVDVI   53 (331)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHT--TCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC--CCCceEEEEeCC
Confidence            456899999999999999999998  65  89999975

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=88.31  E-value=0.44  Score=45.17  Aligned_cols=32  Identities=25%  Similarity=0.426  Sum_probs=29.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ..|+|+|+|.+|..+|..|+..  |.+|+++++.
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~--Ga~V~~~d~~  198 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGM--GAQVTILDVN  198 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCEEEEEECC
Confidence            5799999999999999999999  8999999986

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=88.26  E-value=0.42  Score=45.52  Aligned_cols=34  Identities=18%  Similarity=0.194  Sum_probs=30.4

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ...|+|||+|.+|+.+|..+...  |.+|+++|+.+
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~--Ga~V~~~d~~~  205 (384)
T 1l7d_A          172 PARVLVFGVGVAGLQAIATAKRL--GAVVMATDVRA  205 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence            45799999999999999999988  88999999863

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=88.26  E-value=0.28  Score=42.71  Aligned_cols=32  Identities=16%  Similarity=0.356  Sum_probs=29.2

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEE-Eecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICL-VEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~v-iE~~   91 (473)
                      .+|.|||+|..|.+.|..|++.  |.+|++ +++.
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~--g~~V~~v~~r~   56 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAA--QIPAIIANSRG   56 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHT--TCCEEEECTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCEEEEEECCC
Confidence            5799999999999999999999  889998 7776

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=88.18  E-value=0.61  Score=42.31  Aligned_cols=32  Identities=19%  Similarity=0.391  Sum_probs=29.9

Q ss_pred             ccEEEEcC-ChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGG-GIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGa-Gi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ..|.|||+ |..|...|..|++.  |.+|+++++.
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~--g~~V~~~~r~   44 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDS--AHHLAAIEIA   44 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHS--SSEEEEECCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC--CCEEEEEECC
Confidence            47999999 99999999999999  8999999986

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=88.17  E-value=0.56  Score=45.43  Aligned_cols=37  Identities=19%  Similarity=0.296  Sum_probs=30.1

Q ss_pred             CCCCcEEEEccChHHHHHHHHHhhhCCCC-cEEEEecccc
Q psy7710           7 PTLYDMVVVGGGIVGVATARELKLKYPKM-KTCLVEKEKE   45 (473)
Q Consensus         7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~-~~~~~~~~~~   45 (473)
                      .+.+|.+|||+|++|+++|..|+..  +. ++.++++...
T Consensus         4 ~~~~dVvIIGgG~aGlsaA~~La~~--G~~~V~vlE~~~~   41 (438)
T 3dje_A            4 TKSSSLLIVGAGTWGTSTALHLARR--GYTNVTVLDPYPV   41 (438)
T ss_dssp             CTTSCEEEECCSHHHHHHHHHHHHT--TCCCEEEEESSCS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHc--CCCcEEEEeCCCC
Confidence            3568999999999999999999865  45 6778877654

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=88.00  E-value=0.53  Score=40.69  Aligned_cols=31  Identities=23%  Similarity=0.394  Sum_probs=29.0

Q ss_pred             cEEEEcC-ChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          59 DVVVVGG-GIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        59 dVvIIGa-Gi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .|+|.|| |..|..++..|+++  |.+|+++.|.
T Consensus         2 kilVtGatG~iG~~l~~~L~~~--g~~V~~~~R~   33 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRR--GHEVLAVVRD   33 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT--TCEEEEEESC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHC--CCEEEEEEec
Confidence            4999998 99999999999999  8999999986

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=87.99  E-value=0.45  Score=43.22  Aligned_cols=35  Identities=31%  Similarity=0.312  Sum_probs=30.7

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ....|+|||+|-.|..+|..|+..+- -+++|+|.+
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGV-G~i~lvD~D   69 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGI-GKLLLFDYD   69 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECCC
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCC-CEEEEECCC
Confidence            35689999999999999999999942 489999987

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=87.91  E-value=0.53  Score=43.51  Aligned_cols=36  Identities=25%  Similarity=0.266  Sum_probs=29.8

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ++.+|+|||+|-+|.++|+.|+..+....++++|..
T Consensus         4 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~   39 (318)
T 1ez4_A            4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (318)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            446899999999999999999988222389999975

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=87.90  E-value=0.54  Score=43.84  Aligned_cols=34  Identities=18%  Similarity=0.332  Sum_probs=30.8

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ...|.|||.|..|.+.|..|++.  |.+|+++++.+
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~--G~~V~~~dr~~   41 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAA--NHSVFGYNRSR   41 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHT--TCCEEEECSCH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence            35699999999999999999999  89999999863

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=87.89  E-value=0.52  Score=43.09  Aligned_cols=33  Identities=15%  Similarity=0.131  Sum_probs=29.9

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      ...++|||+|.+|.++|+.|++.  |. +|+|+.|.
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~--G~~~V~v~nR~  174 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLST--AAERIDMANRT  174 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTT--TCSEEEEECSS
T ss_pred             CCEEEEECcHHHHHHHHHHHHHC--CCCEEEEEeCC
Confidence            35699999999999999999999  86 99999986

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=87.83  E-value=0.55  Score=40.41  Aligned_cols=31  Identities=16%  Similarity=0.318  Sum_probs=28.8

Q ss_pred             cEEEEcC-ChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          59 DVVVVGG-GIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        59 dVvIIGa-Gi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .|+|+|| |..|..++..|+++  |.+|+++.|.
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~--g~~V~~~~R~   33 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNR--GHEVTAIVRN   33 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT--TCEEEEEESC
T ss_pred             eEEEEcCCchhHHHHHHHHHhC--CCEEEEEEcC
Confidence            4999996 99999999999999  8999999987

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=87.80  E-value=0.46  Score=44.05  Aligned_cols=33  Identities=21%  Similarity=0.261  Sum_probs=29.8

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCC----CeEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPK----MKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G----~~V~viE~~   91 (473)
                      ..+|.|||+|..|.+.|..|++.  |    .+|+++++.
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~--G~~~~~~V~v~~r~   58 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAA--GVLAAHKIMASSPD   58 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHT--TSSCGGGEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC--CCCCcceEEEECCC
Confidence            35799999999999999999998  7    789999986

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=87.77  E-value=0.55  Score=42.46  Aligned_cols=33  Identities=18%  Similarity=0.363  Sum_probs=30.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ..|+|.|+|..|..++..|.++  |.+|+++.|..
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~--g~~V~~~~r~~   36 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQ--GHEVTGLRRSA   36 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT--TCCEEEEECTT
T ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCc
Confidence            4699999999999999999999  89999999873

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=87.74  E-value=0.33  Score=48.19  Aligned_cols=39  Identities=21%  Similarity=0.271  Sum_probs=31.4

Q ss_pred             CCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccccc
Q psy7710           8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFF   47 (473)
Q Consensus         8 ~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~~   47 (473)
                      +.+|++|||+|++|.++|..|+.. .+..+.++|..+...
T Consensus         9 ~~~DVvIIGaGisGLsaA~~L~k~-~G~~V~VlE~~~~~G   47 (513)
T 4gde_A            9 ISVDVLVIGAGPTGLGAAKRLNQI-DGPSWMIVDSNETPG   47 (513)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHH-CCSCEEEEESSSSCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhh-CCCCEEEEECCCCCc
Confidence            458999999999999999999853 356788888776654

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=87.67  E-value=0.44  Score=45.95  Aligned_cols=33  Identities=21%  Similarity=0.321  Sum_probs=30.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .+..|||.|..|+.+|..|+++  |.+|+++|+++
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~--G~~V~~~D~~~   44 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKH--GVDVLGVDINQ   44 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCH
T ss_pred             CccEEEeeCHHHHHHHHHHHHC--CCEEEEEECCH
Confidence            4689999999999999999999  99999999874

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=87.64  E-value=0.53  Score=46.11  Aligned_cols=36  Identities=22%  Similarity=0.349  Sum_probs=31.3

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEeccCc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKEKE   93 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~~~   93 (473)
                      ..+|.|||+|..|+.+|..|+++ +|. +|+++|+.+.
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~-~G~~~V~~~D~~~~   54 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADA-PCFEKVLGFQRNSK   54 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHS-TTCCEEEEECCCCT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHh-CCCCeEEEEECChh
Confidence            35799999999999999999987 357 9999998753

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=87.63  E-value=0.52  Score=41.91  Aligned_cols=33  Identities=21%  Similarity=0.303  Sum_probs=29.8

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      ...|+|||+|-.|..+|..|+..  |. +++|+|.+
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~--Gvg~i~lvD~d   61 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGA--GVGTLVLADDD   61 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHT--TCSEEEEECCC
T ss_pred             cCcEEEEccCHHHHHHHHHHHHc--CCCeEEEEeCC
Confidence            46799999999999999999999  64 89999987

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=87.55  E-value=0.43  Score=43.04  Aligned_cols=33  Identities=18%  Similarity=0.222  Sum_probs=30.2

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ...++|+|+|-+|.++|+.|++.  |.+|+|+.|.
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~--G~~v~v~~R~  151 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQA--QQNIVLANRT  151 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHT--TCEEEEEESS
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC--CCEEEEEECC
Confidence            35699999999999999999999  8999999986

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=87.50  E-value=0.54  Score=44.07  Aligned_cols=35  Identities=34%  Similarity=0.511  Sum_probs=29.7

Q ss_pred             CCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710           8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK   44 (473)
Q Consensus         8 ~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~   44 (473)
                      ++||.+|||+|++|+++|..++..  +.++.++++.+
T Consensus         3 ~~~dvvIIG~G~~Gl~~A~~La~~--G~~V~vlE~~~   37 (369)
T 3dme_A            3 TDIDCIVIGAGVVGLAIARALAAG--GHEVLVAEAAE   37 (369)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCC
Confidence            358999999999999999999853  67888888764

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=87.49  E-value=0.4  Score=46.03  Aligned_cols=30  Identities=17%  Similarity=0.220  Sum_probs=27.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHh-cCCCCeEEEEe
Q psy7710          58 YDVVVVGGGIVGVATARELKL-NYPKMKICLVE   89 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~-~~~G~~V~viE   89 (473)
                      ++|.|||+|..|.+.|..|++ .  |.+|++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~--G~~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRD--GVEVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTST--TEEEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCC--CCEEEEEe
Confidence            469999999999999999987 6  88999999

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=87.48  E-value=0.53  Score=44.73  Aligned_cols=33  Identities=27%  Similarity=0.364  Sum_probs=30.2

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ...|+|||+|.+|..+|..++..  |.+|+++++.
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~--Ga~V~~~d~~  200 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGM--GATVTVLDIN  200 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCC
Confidence            45799999999999999999988  8999999986

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=87.46  E-value=0.43  Score=49.54  Aligned_cols=33  Identities=30%  Similarity=0.557  Sum_probs=30.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ..|.|||+|..|...|..|+++  |.+|+++|+.+
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~a--G~~V~l~D~~~  345 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILS--NYPVILKEVNE  345 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTT--TCCEEEECSSH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhC--CCEEEEEECCH
Confidence            4699999999999999999999  99999999873

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=87.40  E-value=0.68  Score=40.49  Aligned_cols=34  Identities=29%  Similarity=0.487  Sum_probs=27.7

Q ss_pred             CCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecc
Q psy7710           8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKE   43 (473)
Q Consensus         8 ~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~   43 (473)
                      +.||.+|||+|.+|+.+|..++..  +.++.++++.
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~--g~~v~lie~~   35 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQK--GVRVGLLTQS   35 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHT--TCCEEEEESC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC--CCCEEEEecC
Confidence            468999999999999999999854  5567677655

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=87.39  E-value=0.55  Score=44.98  Aligned_cols=36  Identities=28%  Similarity=0.372  Sum_probs=29.2

Q ss_pred             CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710           7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK   44 (473)
Q Consensus         7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~   44 (473)
                      .+.||.+|||+|++|.++|..|+..  +.++.++++.+
T Consensus        21 ~~~~dV~IVGaG~aGl~~A~~La~~--G~~V~v~E~~~   56 (407)
T 3rp8_A           21 QGHMKAIVIGAGIGGLSAAVALKQS--GIDCDVYEAVK   56 (407)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhC--CCCEEEEeCCC
Confidence            5669999999999999999999854  56787887764

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=87.30  E-value=0.51  Score=46.42  Aligned_cols=33  Identities=15%  Similarity=0.274  Sum_probs=30.6

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      +.+|.|||.|..|...|..|+++  |.+|+++++.
T Consensus        15 ~~~IgvIGlG~MG~~lA~~La~~--G~~V~v~~r~   47 (480)
T 2zyd_A           15 KQQIGVVGMAVMGRNLALNIESR--GYTVSIFNRS   47 (480)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHTT--TCCEEEECSS
T ss_pred             CCeEEEEccHHHHHHHHHHHHhC--CCeEEEEeCC
Confidence            45799999999999999999999  8999999986

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=87.29  E-value=0.56  Score=45.99  Aligned_cols=34  Identities=12%  Similarity=0.322  Sum_probs=31.3

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ..+|.|||.|..|...|..|++.  |.+|+++++.+
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~--G~~V~v~dr~~   37 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDH--GFVVCAFNRTV   37 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT--TCCEEEECSST
T ss_pred             CCEEEEEChhHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence            46799999999999999999999  89999999874

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=87.24  E-value=0.64  Score=40.64  Aligned_cols=34  Identities=26%  Similarity=0.235  Sum_probs=30.7

Q ss_pred             cccEEEEcC-ChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGG-GIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGa-Gi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ...|+|.|| |..|..++.+|+++  |.+|+++.|..
T Consensus        21 ~~~ilVtGatG~iG~~l~~~L~~~--G~~V~~~~R~~   55 (236)
T 3e8x_A           21 GMRVLVVGANGKVARYLLSELKNK--GHEPVAMVRNE   55 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSG
T ss_pred             CCeEEEECCCChHHHHHHHHHHhC--CCeEEEEECCh
Confidence            457999998 99999999999999  89999999873

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=87.24  E-value=0.57  Score=46.23  Aligned_cols=34  Identities=12%  Similarity=0.241  Sum_probs=31.2

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ...|.|||.|..|...|..|+++  |.+|+++++.+
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~--G~~V~v~dr~~   43 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADH--GFTVCAYNRTQ   43 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence            45799999999999999999999  89999999864

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=87.22  E-value=0.65  Score=42.20  Aligned_cols=34  Identities=24%  Similarity=0.403  Sum_probs=29.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ..|.|||+|..|.+.|..|++.+++.+|+++++.
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~   40 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRS   40 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSS
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCC
Confidence            4699999999999999999988545799999876

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=87.22  E-value=0.6  Score=42.20  Aligned_cols=31  Identities=29%  Similarity=0.458  Sum_probs=28.5

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCC--eEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKM--KICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~--~V~viE~~   91 (473)
                      .|.|||+|..|.+.|..|++.  |.  +|+++++.
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~--g~~~~V~~~d~~   35 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRS--GFKGKIYGYDIN   35 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT--TCCSEEEEECSC
T ss_pred             EEEEEecCHHHHHHHHHHHhc--CCCcEEEEEeCC
Confidence            599999999999999999998  77  89999886

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=87.21  E-value=0.63  Score=44.04  Aligned_cols=34  Identities=41%  Similarity=0.674  Sum_probs=28.8

Q ss_pred             CCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecc
Q psy7710           8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKE   43 (473)
Q Consensus         8 ~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~   43 (473)
                      .++|.+|||+|++|+++|..++..  +.++.++++.
T Consensus         4 ~~~dVvIIGgGi~Gl~~A~~La~~--G~~V~lle~~   37 (382)
T 1y56_B            4 EKSEIVVIGGGIVGVTIAHELAKR--GEEVTVIEKR   37 (382)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHT--TCCEEEECSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeCC
Confidence            468999999999999999999864  5678788765

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=87.21  E-value=0.58  Score=43.62  Aligned_cols=35  Identities=20%  Similarity=0.381  Sum_probs=29.2

Q ss_pred             cccEEEEcC-ChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          57 LYDVVVVGG-GIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGa-Gi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ..+|+|||+ |..|.++|+.++.++...+|+++|..
T Consensus         8 ~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~   43 (343)
T 3fi9_A            8 EEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF   43 (343)
T ss_dssp             SSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            457999997 99999999999998212489999975

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=87.15  E-value=0.38  Score=45.23  Aligned_cols=33  Identities=27%  Similarity=0.291  Sum_probs=30.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCC-------CeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPK-------MKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G-------~~V~viE~~~   92 (473)
                      .+|.|||+|..|.+.|..|++.  |       .+|+++++.+
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~--g~~~~~~~~~V~~~~r~~   48 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGN--AAQLAQFDPRVTMWVFEE   48 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHH--HHHCTTEEEEEEEECCCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhc--CCcccCCCCeEEEEEcCh
Confidence            4799999999999999999998  8       8999999874

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=87.12  E-value=0.53  Score=43.09  Aligned_cols=33  Identities=30%  Similarity=0.478  Sum_probs=30.1

Q ss_pred             ccEEEEc-CChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVG-GGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIG-aGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ..|.||| .|..|.+.|..|++.  |.+|+++++.+
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~--G~~V~~~~~~~   55 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRAS--GYPISILDRED   55 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTT--TCCEEEECTTC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhC--CCeEEEEECCc
Confidence            4699999 999999999999999  88999999863

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=87.09  E-value=0.62  Score=43.16  Aligned_cols=34  Identities=26%  Similarity=0.334  Sum_probs=30.0

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ...|+|||+|-.|..+|..|+..|- -+++|+|.+
T Consensus        34 ~~~VlIvGaGGlGs~va~~La~aGV-g~ItlvD~D   67 (340)
T 3rui_A           34 NTKVLLLGAGTLGCYVSRALIAWGV-RKITFVDNG   67 (340)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-CEEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-CEEEEecCC
Confidence            5679999999999999999999942 489999987

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=87.08  E-value=0.37  Score=47.13  Aligned_cols=39  Identities=28%  Similarity=0.432  Sum_probs=31.1

Q ss_pred             CCCcEEEEccChHHHHHHHHHhhhC----CCCcEEEEeccccc
Q psy7710           8 TLYDMVVVGGGIVGVATARELKLKY----PKMKTCLVEKEKEF   46 (473)
Q Consensus         8 ~~~~~~vvg~g~ag~~~a~~l~~~~----~~~~~~~~~~~~~~   46 (473)
                      +++|.+|||+|++|.++|..|....    |+.++.++++.+..
T Consensus         4 ~~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~   46 (470)
T 3i6d_A            4 GKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRV   46 (470)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCC
Confidence            4689999999999999999998654    44778888876543

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=87.07  E-value=0.43  Score=45.34  Aligned_cols=33  Identities=12%  Similarity=0.261  Sum_probs=30.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCC-------CeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPK-------MKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G-------~~V~viE~~~   92 (473)
                      .+|.|||+|..|.+.|..|++.  |       .+|+++++.+
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~--G~~~~~~~~~V~~~~r~~   61 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTN--AKNNYLFENEVRMWIRDE   61 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHH--HHHCTTBCSCEEEECCSC
T ss_pred             CEEEEECcCHHHHHHHHHHHHc--CCccCCCCCeEEEEECCh
Confidence            4699999999999999999998  7       8999999864

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=87.01  E-value=0.61  Score=49.29  Aligned_cols=42  Identities=17%  Similarity=0.169  Sum_probs=35.6

Q ss_pred             CcEEEeCceEEEEEEcCCeEEEEcCC------CcEEEcCEEEEcCCcC
Q psy7710         218 GGEIRLNQQVESFKENPESVTISTKQ------GDHLESSYALVCAGLQ  259 (473)
Q Consensus       218 Gv~i~~~~~V~~i~~~~~~v~v~~~~------g~~i~ad~VV~aaG~~  259 (473)
                      +++|+++++|++|..++++|.|++.+      +.+++||+||+|....
T Consensus       581 ~l~I~Lnt~V~~I~~~~~gV~V~~~~~~~~~~g~~i~AD~VIvTvPl~  628 (852)
T 2xag_A          581 GLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLG  628 (852)
T ss_dssp             TCCEECSEEEEEEEEETTEEEEEEEESSSTTCEEEEEESEEEECCCHH
T ss_pred             CCCEEeCCeEEEEEEcCCcEEEEEeecccCCCCeEEECCEEEECCCHH
Confidence            56899999999999998888887654      4579999999999654

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=86.95  E-value=0.54  Score=42.90  Aligned_cols=32  Identities=19%  Similarity=0.371  Sum_probs=29.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .+|.|||+|..|...|..|++.  |.+|+++++.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~~~   37 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKA--GYSLVVSDRN   37 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSC
T ss_pred             ceEEEECchHHHHHHHHHHHhC--CCEEEEEeCC
Confidence            4799999999999999999998  8999999986

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=86.90  E-value=0.7  Score=42.05  Aligned_cols=33  Identities=30%  Similarity=0.525  Sum_probs=29.8

Q ss_pred             ccEEEEcC-ChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGG-GIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGa-Gi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ++|+|.|| |.+|..++.+|.++  |.+|+++-|.+
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~--G~~V~~l~R~~   34 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNAR--GHEVTLVSRKP   34 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCC
Confidence            35999998 99999999999999  99999998864

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=86.89  E-value=0.64  Score=43.81  Aligned_cols=33  Identities=33%  Similarity=0.471  Sum_probs=30.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ..|+|||||..|..+|+.+.+.  |++|+++|.++
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~--G~~vv~vd~~~   34 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKA--GMKVVLVDKNP   34 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCT
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCC
Confidence            3599999999999999999999  99999999864

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=86.85  E-value=0.58  Score=45.71  Aligned_cols=33  Identities=27%  Similarity=0.288  Sum_probs=30.4

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ...|+|||+|-+|...|..|.+.  |.+|+|+++.
T Consensus        12 ~~~vlVvGgG~va~~k~~~L~~~--ga~V~vi~~~   44 (457)
T 1pjq_A           12 DRDCLIVGGGDVAERKARLLLEA--GARLTVNALT   44 (457)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT--TBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--cCEEEEEcCC
Confidence            35699999999999999999999  9999999975

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=86.84  E-value=0.54  Score=40.75  Aligned_cols=33  Identities=24%  Similarity=0.389  Sum_probs=30.0

Q ss_pred             ccEEEEcC-ChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGG-GIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGa-Gi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ..|+|.|| |..|..++..|.++  |.+|+++.|.+
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~--g~~V~~~~r~~   38 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNR--GFEVTAVVRHP   38 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTT--TCEEEEECSCG
T ss_pred             CEEEEEcCCchHHHHHHHHHHHC--CCEEEEEEcCc
Confidence            56999995 99999999999999  89999999973

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=86.82  E-value=0.58  Score=42.22  Aligned_cols=32  Identities=22%  Similarity=0.269  Sum_probs=29.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ..|+|||+|.+|.++|..|.+.  |.+|+++++.
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~--g~~V~v~~r~  161 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKE--GAKVFLWNRT  161 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHH--TCEEEEECSS
T ss_pred             CEEEEECchHHHHHHHHHHHHc--CCEEEEEECC
Confidence            5699999999999999999999  7899999986

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=86.81  E-value=0.56  Score=46.47  Aligned_cols=35  Identities=26%  Similarity=0.508  Sum_probs=29.3

Q ss_pred             CCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710           8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK   44 (473)
Q Consensus         8 ~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~   44 (473)
                      ++||.+|||+|++|+++|..++..  +.++.++++..
T Consensus         2 ~~~DVvIIGgGi~G~~~A~~La~~--G~~V~llE~~~   36 (501)
T 2qcu_A            2 ETKDLIVIGGGINGAGIAADAAGR--GLSVLMLEAQD   36 (501)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhC--CCCEEEEECCC
Confidence            468999999999999999999864  57788888764

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=86.73  E-value=0.58  Score=41.76  Aligned_cols=33  Identities=18%  Similarity=0.194  Sum_probs=29.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCC----CeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPK----MKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G----~~V~viE~~~   92 (473)
                      .+|.|||+|..|.+.|..|++.  |    .+|+++++.+
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~~--g~~~~~~v~~~~~~~   41 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIANA--NIIKKENLFYYGPSK   41 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHH--TSSCGGGEEEECSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHHC--CCCCCCeEEEEeCCc
Confidence            4699999999999999999998  7    6899999874

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=86.71  E-value=0.66  Score=41.26  Aligned_cols=31  Identities=32%  Similarity=0.338  Sum_probs=29.1

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      .++|||+|-+|.++++.|.+.  |. +|+|++|.
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~--G~~~I~v~nR~  141 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQM--GVKDIWVVNRT  141 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT--TCCCEEEEESC
T ss_pred             eEEEECcHHHHHHHHHHHHHc--CCCEEEEEeCC
Confidence            799999999999999999999  77 89999986

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=86.71  E-value=0.78  Score=44.77  Aligned_cols=38  Identities=26%  Similarity=0.449  Sum_probs=30.5

Q ss_pred             CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccccc
Q psy7710           7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEF   46 (473)
Q Consensus         7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~   46 (473)
                      ...||.+|||+|++|.++|..|+..  +.++.++++.+..
T Consensus         9 ~~~~dvvVIGaG~~GL~aA~~La~~--G~~V~vlE~~~~~   46 (453)
T 2bcg_G            9 DTDYDVIVLGTGITECILSGLLSVD--GKKVLHIDKQDHY   46 (453)
T ss_dssp             CCBCSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSS
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCCCC
Confidence            3569999999999999999999854  5678788766543

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=86.68  E-value=0.55  Score=42.77  Aligned_cols=32  Identities=19%  Similarity=0.210  Sum_probs=29.4

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      +|.|||+|..|...|..|++.  |.+|+++++.+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~--g~~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKH--GYPLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHT--TCCEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHC--CCEEEEEeCCH
Confidence            589999999999999999998  88999999863

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=86.66  E-value=0.6  Score=45.91  Aligned_cols=32  Identities=28%  Similarity=0.461  Sum_probs=29.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ++|.|||+|..|...|..|+++  |.+|+++++.
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~--G~~V~v~dr~   33 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEK--GFKVAVFNRT   33 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT--TCCEEEECSS
T ss_pred             CEEEEEChHHHHHHHHHHHHHC--CCEEEEEeCC
Confidence            3699999999999999999999  8999999986

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=86.62  E-value=0.58  Score=42.98  Aligned_cols=34  Identities=21%  Similarity=0.179  Sum_probs=30.2

Q ss_pred             CcccEEEEcCC-hHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          56 ALYDVVVVGGG-IVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaG-i~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ....++|||+| +.|..+|..|...  |.+|+++++.
T Consensus       176 ~gk~vvVIG~G~iVG~~~A~~L~~~--gAtVtv~nR~  210 (320)
T 1edz_A          176 YGKKCIVINRSEIVGRPLAALLAND--GATVYSVDVN  210 (320)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTT--SCEEEEECSS
T ss_pred             CCCEEEEECCCcchHHHHHHHHHHC--CCEEEEEeCc
Confidence            34689999999 6799999999999  8999999886

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=86.62  E-value=0.68  Score=40.94  Aligned_cols=32  Identities=16%  Similarity=0.256  Sum_probs=29.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCC----eEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKM----KICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~----~V~viE~~   91 (473)
                      ..|.|||+|..|.+.|..|.+.  |.    +|+++++.
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~--g~~~~~~V~~~~r~   38 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINK--NIVSSNQIICSDLN   38 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT--TSSCGGGEEEECSC
T ss_pred             CeEEEECccHHHHHHHHHHHhC--CCCCCCeEEEEeCC
Confidence            4699999999999999999999  87    99999986

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=86.58  E-value=0.74  Score=42.34  Aligned_cols=33  Identities=15%  Similarity=0.286  Sum_probs=29.9

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      ...++|+|+|-+|.++|+.|++.  |. +|+|+.|.
T Consensus       154 gk~~lVlGaGG~g~aia~~L~~~--Ga~~V~i~nR~  187 (315)
T 3tnl_A          154 GKKMTICGAGGAATAICIQAALD--GVKEISIFNRK  187 (315)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHT--TCSEEEEEECS
T ss_pred             CCEEEEECCChHHHHHHHHHHHC--CCCEEEEEECC
Confidence            45799999999999999999999  87 89999886

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=86.41  E-value=0.6  Score=42.33  Aligned_cols=37  Identities=30%  Similarity=0.539  Sum_probs=30.1

Q ss_pred             CCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccc
Q psy7710           8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE   45 (473)
Q Consensus         8 ~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~   45 (473)
                      .+||.+|||+|.+|.++|..++. .++.++.++++.+.
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~-~~G~~V~viEk~~~   74 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISK-NPNVQVAIIEQSVS   74 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHT-STTSCEEEEESSSS
T ss_pred             cccCEEEECccHHHHHHHHHHHH-cCCCeEEEEECCCC
Confidence            45899999999999999999984 34678888887643

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=86.37  E-value=0.36  Score=42.38  Aligned_cols=33  Identities=27%  Similarity=0.331  Sum_probs=29.4

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ...|+|+|+|-.|..+|..|.+.  |. |+++|+++
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~--g~-v~vid~~~   41 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGS--EV-FVLAEDEN   41 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTS--EE-EEEESCGG
T ss_pred             CCEEEEECCChHHHHHHHHHHhC--Ce-EEEEECCH
Confidence            45699999999999999999998  88 99999874

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=86.34  E-value=0.52  Score=45.51  Aligned_cols=46  Identities=22%  Similarity=0.377  Sum_probs=39.7

Q ss_pred             HHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcC
Q psy7710         213 EFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ  259 (473)
Q Consensus       213 ~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~  259 (473)
                      .+++.| +|+++++|++|..+++++.|++.+|.+++||+||+|+|..
T Consensus       213 ~~~~~g-~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vi~a~~~~  258 (431)
T 3k7m_X          213 MSQEIP-EIRLQTVVTGIDQSGDVVNVTVKDGHAFQAHSVIVATPMN  258 (431)
T ss_dssp             HHTTCS-CEESSCCEEEEECSSSSEEEEETTSCCEEEEEEEECSCGG
T ss_pred             HHhhCC-ceEeCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCcc
Confidence            344567 9999999999998888899999888679999999999954

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=86.29  E-value=0.54  Score=42.43  Aligned_cols=34  Identities=15%  Similarity=0.149  Sum_probs=30.3

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~~   92 (473)
                      ...++|||+|-+|.++|+.|++.  |. +|+|+.|..
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~~--G~~~v~v~~R~~  151 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYKI--VRPTLTVANRTM  151 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHTT--CCSCCEEECSCG
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC--CCCEEEEEeCCH
Confidence            35799999999999999999999  87 899999873

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=86.28  E-value=0.78  Score=41.53  Aligned_cols=33  Identities=36%  Similarity=0.424  Sum_probs=29.7

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      ...++|+|+|-+|.++|+.|++.  |. +|+|+.|.
T Consensus       127 ~k~vlVlGaGG~g~aia~~L~~~--G~~~v~i~~R~  160 (283)
T 3jyo_A          127 LDSVVQVGAGGVGNAVAYALVTH--GVQKLQVADLD  160 (283)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC--CCCEEEEEECC
Confidence            45799999999999999999999  87 79999886

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=86.25  E-value=0.64  Score=45.76  Aligned_cols=33  Identities=12%  Similarity=0.348  Sum_probs=30.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .+|.|||.|..|...|..|++.  |.+|+++++.+
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~--G~~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDH--GFVVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT--TCCEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHC--CCeEEEEeCCH
Confidence            4699999999999999999999  89999999863

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=86.25  E-value=0.88  Score=40.61  Aligned_cols=33  Identities=24%  Similarity=0.282  Sum_probs=29.3

Q ss_pred             cccEEEEcC-C-hHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          57 LYDVVVVGG-G-IVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGa-G-i~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ...++|.|| | -.|..+|.+|+++  |.+|+++++.
T Consensus        22 ~k~vlITGasg~GIG~~~a~~l~~~--G~~V~~~~r~   56 (266)
T 3o38_A           22 GKVVLVTAAAGTGIGSTTARRALLE--GADVVISDYH   56 (266)
T ss_dssp             TCEEEESSCSSSSHHHHHHHHHHHT--TCEEEEEESC
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHC--CCEEEEecCC
Confidence            346999998 7 5999999999999  9999999986

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=86.23  E-value=0.66  Score=41.34  Aligned_cols=32  Identities=16%  Similarity=0.278  Sum_probs=29.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .+|.|||+|..|...|..|++.  |.+|.++++.
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~--g~~v~~~~~~   35 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQT--PHELIISGSS   35 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTS--SCEEEEECSS
T ss_pred             cEEEEECCCHHHHHHHHHHHhC--CCeEEEECCC
Confidence            4799999999999999999998  7899999986

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=86.16  E-value=0.67  Score=45.16  Aligned_cols=33  Identities=30%  Similarity=0.277  Sum_probs=30.2

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ...++|+|+|.+|..+|..|+..  |.+|+++|+.
T Consensus       265 GKtVvVtGaGgIG~aiA~~Laa~--GA~Viv~D~~  297 (488)
T 3ond_A          265 GKVAVVAGYGDVGKGCAAALKQA--GARVIVTEID  297 (488)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCC
Confidence            35699999999999999999999  9999999986

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=86.14  E-value=0.64  Score=42.23  Aligned_cols=31  Identities=26%  Similarity=0.391  Sum_probs=28.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ..++|+|+|.+|.++|+.|++.  | +|++++|.
T Consensus       129 k~vlV~GaGgiG~aia~~L~~~--G-~V~v~~r~  159 (287)
T 1nvt_A          129 KNIVIYGAGGAARAVAFELAKD--N-NIIIANRT  159 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSS--S-EEEEECSS
T ss_pred             CEEEEECchHHHHHHHHHHHHC--C-CEEEEECC
Confidence            4699999999999999999999  8 99999886

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=86.13  E-value=0.73  Score=44.42  Aligned_cols=35  Identities=20%  Similarity=0.413  Sum_probs=27.7

Q ss_pred             CCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710           8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK   44 (473)
Q Consensus         8 ~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~   44 (473)
                      .+||.+|||+|++|.++|..++..  +.++.++++.+
T Consensus        26 ~~~dViIIGgG~AGl~aA~~La~~--G~~V~llEk~~   60 (417)
T 3v76_A           26 EKQDVVIIGAGAAGMMCAIEAGKR--GRRVLVIDHAR   60 (417)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCC
Confidence            458999999999999999998854  56777777654

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=86.07  E-value=0.68  Score=43.30  Aligned_cols=35  Identities=23%  Similarity=0.464  Sum_probs=29.2

Q ss_pred             CcEEEEccChHHHHHHHHHhhhC----CCCcEEEEeccc
Q psy7710          10 YDMVVVGGGIVGVATARELKLKY----PKMKTCLVEKEK   44 (473)
Q Consensus        10 ~~~~vvg~g~ag~~~a~~l~~~~----~~~~~~~~~~~~   44 (473)
                      +|++|||+|++|+++|..|+...    |+.++.++++..
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            48999999999999999998664    557888888764

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=86.05  E-value=0.77  Score=41.49  Aligned_cols=33  Identities=30%  Similarity=0.242  Sum_probs=29.9

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      ...++|+|+|-+|.++|+.|++.  |. +|+|+.|.
T Consensus       122 ~k~vlvlGaGGaaraia~~L~~~--G~~~v~v~nRt  155 (282)
T 3fbt_A          122 NNICVVLGSGGAARAVLQYLKDN--FAKDIYVVTRN  155 (282)
T ss_dssp             TSEEEEECSSTTHHHHHHHHHHT--TCSEEEEEESC
T ss_pred             CCEEEEECCcHHHHHHHHHHHHc--CCCEEEEEeCC
Confidence            45799999999999999999999  77 89999886

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=86.03  E-value=0.86  Score=45.75  Aligned_cols=37  Identities=22%  Similarity=0.351  Sum_probs=30.7

Q ss_pred             CCCcEEEEccChHHHHHHHHHhhhC-CCCcEEEEeccc
Q psy7710           8 TLYDMVVVGGGIVGVATARELKLKY-PKMKTCLVEKEK   44 (473)
Q Consensus         8 ~~~~~~vvg~g~ag~~~a~~l~~~~-~~~~~~~~~~~~   44 (473)
                      ..+|++|||+|++|.++|..|+... .+.++.+++++.
T Consensus        24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   61 (550)
T 2e4g_A           24 KIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD   61 (550)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence            4689999999999999999998644 577888888653

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=86.02  E-value=0.59  Score=44.24  Aligned_cols=36  Identities=39%  Similarity=0.577  Sum_probs=29.7

Q ss_pred             CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710           7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK   44 (473)
Q Consensus         7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~   44 (473)
                      ..++|.+|||+|++|+++|..++..  +.++.++++..
T Consensus        15 ~~~~dvvIIGgG~~Gl~~A~~La~~--G~~V~llE~~~   50 (382)
T 1ryi_A           15 KRHYEAVVIGGGIIGSAIAYYLAKE--NKNTALFESGT   50 (382)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhC--CCcEEEEeCCC
Confidence            4569999999999999999999854  56787887653

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=86.02  E-value=0.75  Score=41.84  Aligned_cols=33  Identities=33%  Similarity=0.370  Sum_probs=28.0

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      +|.|||+|-.|.++|+.|..++.--+++++|..
T Consensus         2 KV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~   34 (294)
T 2x0j_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA   34 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            699999999999999999887322479999976

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=86.00  E-value=0.81  Score=41.86  Aligned_cols=34  Identities=21%  Similarity=0.219  Sum_probs=30.8

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ....|.|||+|.+|..+|..|...  |.+|+++++.
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~--G~~V~~~d~~  189 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAAL--GANVKVGARS  189 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHT--TCEEEEEESS
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHC--CCEEEEEECC
Confidence            345799999999999999999988  8999999986

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=85.95  E-value=1  Score=38.78  Aligned_cols=31  Identities=19%  Similarity=0.377  Sum_probs=28.2

Q ss_pred             cEEEEcC-ChHHHHHHHHHH-hcCCCCeEEEEecc
Q psy7710          59 DVVVVGG-GIVGVATARELK-LNYPKMKICLVEKE   91 (473)
Q Consensus        59 dVvIIGa-Gi~Gl~~A~~L~-~~~~G~~V~viE~~   91 (473)
                      .|+|.|| |..|..+|..|+ +.  |.+|+++.|.
T Consensus         7 ~vlVtGasg~iG~~~~~~l~~~~--g~~V~~~~r~   39 (221)
T 3r6d_A            7 YITILGAAGQIAQXLTATLLTYT--DMHITLYGRQ   39 (221)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHC--CCEEEEEESS
T ss_pred             EEEEEeCCcHHHHHHHHHHHhcC--CceEEEEecC
Confidence            3999995 999999999999 78  8999999986

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=85.89  E-value=0.78  Score=46.17  Aligned_cols=36  Identities=33%  Similarity=0.614  Sum_probs=30.5

Q ss_pred             CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710           7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK   44 (473)
Q Consensus         7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~   44 (473)
                      ...||.+|||+|++|+++|..++..  +.++.++++.+
T Consensus        16 ~~~~DVvVIGgGi~Gl~~A~~La~~--G~~V~LlEk~d   51 (561)
T 3da1_A           16 EKQLDLLVIGGGITGAGIALDAQVR--GIQTGLVEMND   51 (561)
T ss_dssp             TSCEEEEEECCSHHHHHHHHHHHTT--TCCEEEEESSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhC--CCcEEEEECCC
Confidence            3569999999999999999999854  67888888773

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=85.88  E-value=0.76  Score=44.29  Aligned_cols=34  Identities=12%  Similarity=0.329  Sum_probs=29.6

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ...+|.|||.|..|+..|..|++   |.+|+++|+.+
T Consensus        35 ~~mkIaVIGlG~mG~~lA~~La~---G~~V~~~D~~~   68 (432)
T 3pid_A           35 EFMKITISGTGYVGLSNGVLIAQ---NHEVVALDIVQ   68 (432)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHT---TSEEEEECSCH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHc---CCeEEEEecCH
Confidence            34689999999999999999885   68999999873

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=85.86  E-value=0.61  Score=43.30  Aligned_cols=33  Identities=24%  Similarity=0.321  Sum_probs=28.8

Q ss_pred             cccEEEEcC-ChHHHHHHHHHHhcCCCC-------eEEEEecc
Q psy7710          57 LYDVVVVGG-GIVGVATARELKLNYPKM-------KICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGa-Gi~Gl~~A~~L~~~~~G~-------~V~viE~~   91 (473)
                      ..+|+|+|| |..|.+++..|.++  |.       +|+++|+.
T Consensus         4 ~mkVlVtGaaGfIG~~l~~~L~~~--g~~~~~~~~ev~l~D~~   44 (327)
T 1y7t_A            4 PVRVAVTGAAGQIGYSLLFRIAAG--EMLGKDQPVILQLLEIP   44 (327)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTT--TTTCTTCCEEEEEECCG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhC--CCCCCCCCCEEEEEeCC
Confidence            357999997 99999999999988  64       89999875

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=85.75  E-value=0.82  Score=41.34  Aligned_cols=33  Identities=21%  Similarity=0.456  Sum_probs=29.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCC---eEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKM---KICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~---~V~viE~~~   92 (473)
                      ..|.|||+|..|.+.|..|++.  |.   +|+++++.+
T Consensus         4 ~~I~iIG~G~mG~aia~~l~~~--g~~~~~V~v~dr~~   39 (280)
T 3tri_A            4 SNITFIGGGNMARNIVVGLIAN--GYDPNRICVTNRSL   39 (280)
T ss_dssp             SCEEEESCSHHHHHHHHHHHHT--TCCGGGEEEECSSS
T ss_pred             CEEEEEcccHHHHHHHHHHHHC--CCCCCeEEEEeCCH
Confidence            5699999999999999999998  77   899999873

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=85.71  E-value=0.86  Score=41.52  Aligned_cols=34  Identities=29%  Similarity=0.343  Sum_probs=30.7

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ....|.|||+|.+|..+|..|...  |.+|+++++.
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~~--G~~V~~~dr~  187 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAAL--GAKVKVGARE  187 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESS
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhC--CCEEEEEECC
Confidence            345799999999999999999988  8999999986

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=85.67  E-value=0.72  Score=41.28  Aligned_cols=32  Identities=16%  Similarity=0.349  Sum_probs=29.2

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCe-EEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMK-ICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~-V~viE~~   91 (473)
                      ..|.|||+|..|...|..|++.  |.+ |.++++.
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~--g~~~v~~~~~~   43 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRK--GFRIVQVYSRT   43 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHH--TCCEEEEECSS
T ss_pred             CeEEEEcCCHHHHHHHHHHHHC--CCeEEEEEeCC
Confidence            5799999999999999999999  888 8899886

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=85.61  E-value=0.52  Score=48.88  Aligned_cols=34  Identities=21%  Similarity=0.305  Sum_probs=30.9

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ...|.|||+|..|...|..|+++  |.+|+++|+.+
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~a--G~~V~l~D~~~  347 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASK--GTPILMKDINE  347 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHT--TCCEEEECSSH
T ss_pred             CCEEEEECCChhhHHHHHHHHhC--CCEEEEEECCH
Confidence            34699999999999999999999  99999999873

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=85.60  E-value=0.89  Score=44.99  Aligned_cols=40  Identities=28%  Similarity=0.416  Sum_probs=32.1

Q ss_pred             CCCCCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccc
Q psy7710           4 SQSPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE   45 (473)
Q Consensus         4 ~~~~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~   45 (473)
                      +...+++|.+|||+|++|.++|..|+..  +.++.++++.+.
T Consensus         6 ~~~~~~~dVlIVGaGpaGl~~A~~La~~--G~~v~vlE~~~~   45 (500)
T 2qa1_A            6 HHHRSDAAVIVVGAGPAGMMLAGELRLA--GVEVVVLERLVE   45 (500)
T ss_dssp             --CCSBCSEEEECCSHHHHHHHHHHHHT--TCCEEEEESCCC
T ss_pred             CCccCCCCEEEECcCHHHHHHHHHHHHC--CCCEEEEeCCCC
Confidence            4457889999999999999999999854  677888887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	473
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	3e-20
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	3e-18
d1kifa1	246	c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N	2e-15
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	5e-14
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	4e-11
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	1e-06
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	5e-06
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	1e-05
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	4e-04
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	2e-05
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	0.002
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	2e-05
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	0.002
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	4e-05
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	8e-05
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	2e-04
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	0.002
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	2e-04
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	2e-04
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	2e-04
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	2e-04
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	2e-04
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	3e-04
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	3e-04
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	4e-04
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	4e-04
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	0.002
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	4e-04
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	5e-04
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	6e-04
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	7e-04
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	0.004
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	8e-04
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	0.001
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	0.001
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	0.002
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	0.001
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	0.001
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	0.002
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	0.002
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	0.002
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	0.003
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	0.004
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	0.004

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 89.0 bits (219), Expect = 3e-20
 Identities = 39/216 (18%), Positives = 73/216 (33%), Gaps = 8/216 (3%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEK-EKELGMHQTGHNSGVVHAGIYYKPGT 116
             +V++G GIVG   A EL        I ++++    +    T H  G+V       P  
Sbjct: 2   PRIVIIGAGIVGTNLADELVTRGWN-NITVLDQGPLNMPGGSTSHAPGLVF---QTNPSK 57

Query: 117 LKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVS 176
             A      +       +     + + G L VA  E                  + RL+S
Sbjct: 58  TMASFAKYTVEKLLSLTEDGVSCFNQVGGLEVATTETRLADLKRKLGYAAAWGIEGRLLS 117

Query: 177 AEEIKTIEPYCKG---VKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKEN 233
             E + + P   G   +  +H P+ G+       +++ +     G   R +  V   +++
Sbjct: 118 PAECQELYPLLDGENILGGLHVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQS 177

Query: 234 PESVTISTKQGDHLESSYALVCAGLQADEMALKSGC 269
              VT        + +   + CAG    ++    G 
Sbjct: 178 GGRVTGVQTADGVIPADIVVSCAGFWGAKIGAMIGM 213

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 82.5 bits (202), Expect = 3e-18
 Identities = 46/228 (20%), Positives = 86/228 (37%), Gaps = 8/228 (3%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
           Y+ VV+GGGI+G A A  L          L E    +G   T   +G++ A    +    
Sbjct: 5   YEAVVIGGGIIGSAIAYYLAKE--NKNTALFESG-TMGGRTTSAAAGMLGAHAECEERDA 61

Query: 118 KAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQL-EPLHDLYERSIQNNVKDVRLVS 176
                +    L     ++         +       +L     D+ +    +++  V   S
Sbjct: 62  FFDFAMHSQRLYKGLGEELYALSGVDIRQHNGGMFKLAFSEEDVLQLRQMDDLDSVSWYS 121

Query: 177 AEEIKTIEPYCKG--VKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENP 234
            EE+   EPY  G    A    +   V+   V +   +    LG EI  +  V   + + 
Sbjct: 122 KEEVLEKEPYASGDIFGASFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDG 181

Query: 235 ESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEY 282
           E++ I T  GD + +++ +V +G+ +     + G +      P+ G +
Sbjct: 182 EALFIKTPSGD-VWANHVVVASGVWSGMFFKQLGLN-NADGKPYIGRH 227

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 73.7 bits (180), Expect = 2e-15
 Identities = 36/235 (15%), Positives = 76/235 (32%), Gaps = 25/235 (10%)

Query: 60  VVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKA 119
           VVV+G G++G++TA  +   Y    +      K      T   +  V AG++    +  +
Sbjct: 3   VVVIGAGVIGLSTALCIHERYH--SVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTSEPS 60

Query: 120 KLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYE-RSIQNNVKDVRLVSAE 178
                  N     +   +I       + +          +       ++ V   R ++  
Sbjct: 61  NPQEANWNQQTFNYLLSHIGSPNAANMGLTPVSGYNLFREAVPDPYWKDMVLGFRKLTPR 120

Query: 179 EIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVT 238
           E+     Y    +      + I++     + + E   E G +    ++VESF+E      
Sbjct: 121 ELDMFPDY----RYGWFNTSLILEGRKYLQWLTERLTERGVKFF-LRKVESFEEVAR--- 172

Query: 239 ISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNPAKQHLV 293
                     +   + C G+ A  +        +P  V    E L    +   ++
Sbjct: 173 --------GGADVIINCTGVWAGVLQ------PDPLQVRLEREQLRFGSSNTEVI 213

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 70.1 bits (170), Expect = 5e-14
 Identities = 41/213 (19%), Positives = 78/213 (36%), Gaps = 5/213 (2%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
           +DV+VVG G +G+A   +L      +K  LV+       + + H    +    Y +    
Sbjct: 4   FDVIVVGAGSMGMAAGYQLAKQ--GVKTLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREY 61

Query: 118 KAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSA 177
                           +  +  + K G L+     +   + +  E + ++++    L   
Sbjct: 62  VPLALRSQELWYELEKETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSLTVDLLEGD 121

Query: 178 EEIKTIEPYC--KGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPE 235
           E  K        +   AI  PN+G++      R   E     G ++  + +VE F  +P+
Sbjct: 122 EINKRWPGITVPENYNAIFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPD 181

Query: 236 SVTISTKQGDHLESSYALVCAGLQADEMALKSG 268
           SV I T  G    +   +V  G    ++  K  
Sbjct: 182 SVKIETANGS-YTADKLIVSMGAWNSKLLSKLN 213

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 61.2 bits (147), Expect = 4e-11
 Identities = 32/268 (11%), Positives = 74/268 (27%), Gaps = 40/268 (14%)

Query: 49  MSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHA 108
           M  SQ      VVV+G G++G+++A  L        + ++ ++       +   +     
Sbjct: 2   MMHSQ----KRVVVLGSGVIGLSSALILARKGY--SVHILARD-LPEDVSSQTFASPWAG 54

Query: 109 GIYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNN 168
             +    TL           +          +KK  +L+   +         + ++    
Sbjct: 55  ANWTPFMTLTDGPRQAKWEEST---------FKKWVELVPTGHAMWLKGTRRFAQNEDGL 105

Query: 169 VKDVRLVSAEEIKTIEPY-CKGVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQV 227
           +           + +    C       + +T  V      + +  E  +LG         
Sbjct: 106 LGHWYKDITPNYRPLPSSECPPGAIGVTYDTLSVHAPKYCQYLARELQKLGATFERR--- 162

Query: 228 ESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNP 287
                     T+++ +     +   +   GL A  +        + A    R E   +  
Sbjct: 163 ----------TVTSLEQAFDGADLVVNATGLGAKSI----AGIDDQARGGPRVEAERIVL 208

Query: 288 AKQH------LVRGNIYPVPDPNFPFLG 309
                     L RG+     +     + 
Sbjct: 209 PLDRTKSPLSLGRGSARAAKEKEVTLVH 236

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 47.6 bits (112), Expect = 1e-06
 Identities = 35/174 (20%), Positives = 65/174 (37%), Gaps = 16/174 (9%)

Query: 31  KYPKMKTCLVEKEKEFFSMSSSQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEK 90
            +  +K  +V +E     M+   + A  DVVVVG G  G++ A E+  N P +++ ++E+
Sbjct: 7   TFDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKN-PNVQVAIIEQ 65

Query: 91  EKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVAL 150
               G        G    G           + V     A+ + D+  + Y +    +V  
Sbjct: 66  SVSPG--------GGAWLGGQLFS-----AMIVRKP--AHLFLDEIGVAYDEQDTYVVVK 110

Query: 151 NEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWG 204
           +  L     + +   + NVK    V+AE++        GV    +         
Sbjct: 111 HAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQ 164

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 45.6 bits (107), Expect = 5e-06
 Identities = 17/147 (11%), Positives = 44/147 (29%), Gaps = 12/147 (8%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG---------MHQTGHNSGVVHA 108
            + +++G G  G+  A +L        + + +  K++G              +       
Sbjct: 5   SENIIIGAGAAGLFCAAQLAKL--GKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAH 62

Query: 109 GIYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYK-KCGKLIVALNEQLEPLHDLYERSIQN 167
            +   P  +K+ L             ++ I Y  K    +       + +  L     + 
Sbjct: 63  YLSQNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKY 122

Query: 168 NVKDVRLVSAEEIKTIEPYCKGVKAIH 194
             K +      +++ I+   K    + 
Sbjct: 123 GAKILLRSEVSQVERIQNDEKVRFVLQ 149

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 1e-05
 Identities = 11/46 (23%), Positives = 24/46 (52%)

Query: 54 SPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQT 99
          +P+    +++GGG    A AR ++   P  ++ +V ++ EL   + 
Sbjct: 1  APSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRP 46

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 4e-04
 Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 4/96 (4%)

Query: 6   SPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSSQSPALYDVVVVGG 65
           +P+    +++GGG    A AR ++ + P  +  +V ++ E         P L   +    
Sbjct: 1   APSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL----PYMRPPLSKELWFSD 56

Query: 66  GIVGVATARELKLNYPKMKICLVEKEKELGMHQTGH 101
                 T R  + N  +  I        +      H
Sbjct: 57  DPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPH 92

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSG 104
           YDV+V+GGG  G+  A           + L++K  +LG        G
Sbjct: 3   YDVIVIGGGPSGLMAAIGAAEE--GANVLLLDKGNKLGRKLAISGGG 47

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEF 46
          YD++V+GGG  G+  A     +       L++K  + 
Sbjct: 3  YDVIVIGGGPSGLMAAIGAAEE--GANVLLLDKGNKL 37

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 8/75 (10%)

Query: 31 KYPKMKT----CLVEKEKEFFSMSSSQSPALYDVVVVGGGIVGVATARELK----LNYPK 82
          K P++ T       +++K +  ++  +     DVV+VG G  G++ A  LK     +   
Sbjct: 2  KVPRITTHYTIYPRDQDKRWEGVNMERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKD 61

Query: 83 MKICLVEKEKELGMH 97
          +++CLVEK   +G H
Sbjct: 62 LRVCLVEKAAHIGAH 76

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 4/40 (10%)

Query: 10 YDMVVVGGGIVGVATARELK----LKYPKMKTCLVEKEKE 45
           D+V+VG G  G++ A  LK         ++ CLVEK   
Sbjct: 33 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH 72

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 43.1 bits (100), Expect = 4e-05
 Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 3/103 (2%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
            DVVVVG G  G + A     +    K+ L+EKE  +G +     +G ++A    +    
Sbjct: 17  VDVVVVGSGGAGFSAAISATDS--GAKVILIEKEPVIGGN-AKLAAGGMNAAWTDQQKAK 73

Query: 118 KAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDL 160
           K     E M        +          L     + ++ +  +
Sbjct: 74  KITDSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAM 116

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.5 bits (98), Expect = 8e-05
 Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 8/59 (13%)

Query: 58  YDVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPG 115
           YDV+V+G G+     +  +        K+  +++    G    G +S +      YK  
Sbjct: 7   YDVIVLGTGLTECILSGIMSVNGK---KVLHMDRNPYYG----GESSSITPLEELYKRF 58

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 5/53 (9%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGI 110
            D+ +VG G  G+  A       P  KI L+ K     ++    ++     G 
Sbjct: 6   ADLAIVGAGGAGLRAAIAAAQANPNAKIALISK-----VYPMRSHTVAAEGGS 53

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 10/33 (30%), Positives = 14/33 (42%)

Query: 10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEK 42
           D+ +VG G  G+  A       P  K  L+ K
Sbjct: 6  ADLAIVGAGGAGLRAAIAAAQANPNAKIALISK 38

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYY 112
             V+VVG G  G   +   K       + LV+K    G + +  ++G ++A    
Sbjct: 20  TQVLVVGAGSAGFNASLAAKKA--GANVILVDKAPFSGGN-SMISAGGMNAVGTK 71

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVH 107
            DVV++G G  G+A A   +      K+ L+EKE   G + T   +G ++
Sbjct: 24  TDVVIIGSGGAGLAAAVSARDA--GAKVILLEKEPIPGGN-TKLAAGGMN 70

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
          +YD ++VG G+ G   A ELK      K+ ++EK   +G
Sbjct: 1  MYDYIIVGSGLFGAVCANELKKL--NKKVLVIEKRNHIG 37

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 11/46 (23%), Positives = 17/46 (36%)

Query: 60  VVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGV 105
           V+V+G    G     EL   +P  +I   EK   +     G    +
Sbjct: 3   VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYL 48

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (94), Expect = 2e-04
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMH 97
           DV++VG G  G++ A  +  N P +K+C++E     G  
Sbjct: 51 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGG 90

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 40.1 bits (92), Expect = 3e-04
 Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 12/91 (13%)

Query: 59  DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLK 118
           D+++ G GI G++ A  L       K+ L+E   E+           +  GI  +P  ++
Sbjct: 3   DILIAGAGIGGLSCALALH-QAGIGKVTLLESSSEI---------RPLGVGINIQPAAVE 52

Query: 119 A--KLCVEGMNLAYEYFDKRNIPYKKCGKLI 147
           A  +L +     A            + G  +
Sbjct: 53  ALAELGLGPALAATAIPTHELRYIDQSGATV 83

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 39.4 bits (90), Expect = 3e-04
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 60 VVVVGGGIVGVATARELKLNYPKMKICLVEKE 91
          VVVVGGG  G   A+ +KL  P +++ L+E  
Sbjct: 5  VVVVGGGTGGATAAKYIKLADPSIEVTLIEPN 36

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 40.5 bits (93), Expect = 4e-04
 Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 14/117 (11%)

Query: 31  KYPKMKTCLVEKE-KEFFSMSSSQSPAL---YDVVVVGGGIVGVATAREL-KLNYPKMKI 85
           + P +  C  E + +EF  ++ +   A      VV+VG G+ G++ A  L    +   ++
Sbjct: 1   RNP-LAECFQENDYEEFLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGAGH---QV 56

Query: 86  CLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKRNIPYKK 142
            ++E  +  G                     L      E   +  EY  K ++   +
Sbjct: 57  TVLEASERPGGR-----VRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRLNE 108

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 40.1 bits (92), Expect = 4e-04
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 51 SSQSPALYDVVVVGGGIVGVATARELKLNYPKM---KICLVEKEKEL 94
          +  S +  DV++VG G  G+  AR L     +    K+ +++K    
Sbjct: 1  TKYSESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK 47

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 3  SSQSPTLYDMVVVGGGIVGVATAREL---KLKYPKMKTCLVEKEKEF 46
          +  S +  D+++VG G  G+  AR L     + P +K  +++K    
Sbjct: 1  TKYSESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK 47

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 39.9 bits (92), Expect = 4e-04
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHA 108
            DV+++G G  G++ A  L     + ++ ++ K        T +  G + A
Sbjct: 8   CDVLIIGSGAAGLSLALRLA---DQHQVIVLSKGPVTEGS-TFYAQGGIAA 54

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.5 bits (91), Expect = 5e-04
 Identities = 21/155 (13%), Positives = 46/155 (29%), Gaps = 8/155 (5%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYY----- 112
             V ++G G  G+   + L      +   ++E++    +        +    +       
Sbjct: 3   TQVAIIGAGPSGLLLGQLLHKA--GIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAG 60

Query: 113 -KPGTLKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKD 171
                 +  L  EG+ +A+    +R    +  G   V +  Q E   DL E         
Sbjct: 61  VDRRMARDGLVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATT 120

Query: 172 VRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLV 206
           V   +   +  ++     V          +D   +
Sbjct: 121 VYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYI 155

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 39.7 bits (91), Expect = 6e-04
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 59  DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPG 115
           +V VVGGGI G+A A  L+         L+E    LG    G       AG   + G
Sbjct: 2   NVAVVGGGISGLAVAHHLRSR--GTDAVLLESSARLG----GAVGTHALAGYLVEQG 52

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
          DVVVVGGGI G+A A+ L  +   + + ++E    +G
Sbjct: 1  DVVVVGGGISGMAAAKLLHDS--GLNVVVLEARDRVG 35

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 52/338 (15%), Positives = 101/338 (29%), Gaps = 29/338 (8%)

Query: 11  DMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMSSSQSPALYDVVVVGGGIVGV 70
           D+VVVGGGI G+A A+ L      +   ++E        + +        V +GG  VG 
Sbjct: 1   DVVVVGGGISGMAAAKLLHDS--GLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGP 58

Query: 71  ATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAY 130
              R L+L   ++ +   +  +   +            G +         L         
Sbjct: 59  TQNRILRL-AKELGLETYKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTM 117

Query: 131 EYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCK-- 188
           +   +           +    + +     L +     + K +  +      T E +    
Sbjct: 118 DDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSA 177

Query: 189 --------------GVKAIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENP 234
                          + +  +        G   +V       LG  ++L + V    +  
Sbjct: 178 LWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSERIMDLLGDRVKLERPVIYIDQTR 237

Query: 235 ESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYL-LLNPAKQHLV 293
           E+V + T   +  E+ Y +           L       P +   R + +  + P      
Sbjct: 238 ENVLVETLNHEMYEAKYVISAIPP-----TLGMKIHFNPPLPMMRNQMITRVFPPGILTQ 292

Query: 294 RGNIYPVPDPNFPFLG----VHFTPRMDGSVWLGPNAV 327
            G +   P     F G     H++  M+G+V  G  A 
Sbjct: 293 YGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAA 330

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 39.2 bits (89), Expect = 8e-04
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 59  DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG--MHQTGHNSGVVHAG 109
            V+VVG G+ G++ A+ L        + ++E    +G  MH+T      V  G
Sbjct: 2   RVIVVGAGMSGISAAKRLSEAGIT-DLLILEATDHIGGRMHKTNFAGINVELG 53

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 10/41 (24%), Positives = 19/41 (46%)

Query: 55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
          P +  + ++G G  G+ TA+ L       ++ L E+    G
Sbjct: 2  PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPG 42

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 54 SPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKE 93
          SP    + VVGG I G+  A  L+     + + + E+  +
Sbjct: 1  SPTTDRIAVVGGSISGLTAALMLRDA--GVDVDVYERSPQ 38

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 6  SPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFS 48
          SPT   + VVGG I G+  A  L+     +   + E+  +  S
Sbjct: 1  SPTTDRIAVVGGSISGLTAALMLRDA--GVDVDVYERSPQPLS 41

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG 95
          YDVVV+GGG  G + A         +K+ +VE+ K LG
Sbjct: 7  YDVVVLGGGPGGYSAAFAAADE--GLKVAIVERYKTLG 42

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 15/108 (13%), Positives = 34/108 (31%), Gaps = 4/108 (3%)

Query: 58  YDVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGT 116
           YDV+V+G GI     +  L        K+  ++K+   G          ++      P +
Sbjct: 6   YDVIVLGTGITECILSGLLSVDGK---KVLHIDKQDHYGGEAASVTLSQLYEKFKQNPIS 62

Query: 117 LKAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERS 164
            + +    G +  +                 + ++  +    D  + S
Sbjct: 63  KEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVS 110

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 38.4 bits (88), Expect = 0.002
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 2/55 (3%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPK--MKICLVEKEKELGMHQTGHNSGVVHAGI 110
            D++++GGG  G   A E         +K+ LVEK               ++  I
Sbjct: 22  TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYI 76

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 18/146 (12%), Positives = 45/146 (30%), Gaps = 6/146 (4%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
           YD + +GGG  G   +  L+      +  +V++   LG   +  ++  V   ++      
Sbjct: 43  YDAIFIGGGAAGRFGSAYLRAM--GGRQLIVDRWPFLGG--SCPHNACVPHHLFSDCAAE 98

Query: 118 KAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSA 177
                       +    ++ +  K+   L  A       + +   +S +    +  L   
Sbjct: 99  LMLARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNF--QSKEQLNLEYILNCP 156

Query: 178 EEIKTIEPYCKGVKAIHSPNTGIVDW 203
            ++          K   + N  +   
Sbjct: 157 AKVIDNHTVEAAGKVFKAKNLILAVG 182

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 24/165 (14%), Positives = 43/165 (26%), Gaps = 5/165 (3%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
           YD+VV+G G  G+         + K ++ +++ +K  G        G            +
Sbjct: 4   YDLVVIGAGSGGLEAGWNAASLHKK-RVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLM 62

Query: 118 KAKLCVEGMNLAYEYFDKRNIPYKKC---GKLIVALNEQLEPLHDLYERS-IQNNVKDVR 173
                          F               LI A N+ +  ++D YE            
Sbjct: 63  VTGANYMDTIRESAGFGWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFH 122

Query: 174 LVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCELG 218
                         +     +S     +D   +    G     LG
Sbjct: 123 QGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLG 167

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 7/53 (13%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGI 110
            D +V+GGG+ G+  A  +      +   ++       +     +S     G+
Sbjct: 6   CDSLVIGGGLAGLRAA--VATQQKGLSTIVLSL-----IPVKRSHSAAAQGGM 51

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 36.4 bits (83), Expect = 0.004
 Identities = 26/132 (19%), Positives = 45/132 (34%), Gaps = 9/132 (6%)

Query: 58  YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTL 117
           YD + +GGG  G+A+     +     K  L+E ++  G       + V    +  K    
Sbjct: 3   YDYIAIGGGSGGIASINRAAMY--GQKCALIEAKELGG-------TCVNVGCVPKKVMWH 53

Query: 118 KAKLCVEGMNLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSA 177
            A++         +Y     I       LI +    ++ +H  YE  +  N  DV    A
Sbjct: 54  AAQIREAIHMYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFA 113

Query: 178 EEIKTIEPYCKG 189
             +        G
Sbjct: 114 RFVDAKTLEVNG 125

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 36.3 bits (83), Expect = 0.004
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 4/39 (10%)

Query: 58 YDVVVVGGGIVGVATAREL-KLNYPKMKICLVEKEKELG 95
           DVV++GGG  G   A +  +L     K   +EK   LG
Sbjct: 4  NDVVIIGGGPGGYVAAIKAAQLG---FKTTCIEKRGALG 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	473
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.97
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.97
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.96
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.67
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.64
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.6
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.59
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.58
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	99.57
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	99.53
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.53
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.49
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.46
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.46
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.35
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.35
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.33
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.32
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.31
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.25
d1ryia2	88	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.25
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.24
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.23
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.22
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	99.2
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	99.2
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.19
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	99.18
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.17
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.16
d1kifa2	93	D-aminoacid oxidase {Pig (Sus scrofa) [TaxId: 9823	99.15
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.14
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.14
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.13
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.13
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	99.13
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	99.12
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.11
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.07
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.06
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	99.05
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.04
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.04
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.04
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	99.03
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.02
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.02
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	99.02
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	99.01
d1c0pa2	95	D-aminoacid oxidase {Rhodotorula gracilis [TaxId:	99.01
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	99.01
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	98.99
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.96
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.94
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.93
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.91
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.9
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	98.9
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.89
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.84
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.77
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	98.69
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	98.68
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.67
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.67
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.66
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.61
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.58
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.58
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.54
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.53
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.52
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.49
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.47
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.45
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.43
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.4
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.31
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.26
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.26
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.24
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.21
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.2
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.15
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.15
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.08
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	98.05
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.04
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	97.93
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.93
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	97.65
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.53
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.46
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	97.36
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.22
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.79
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.78
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	96.75
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.74
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.37
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.37
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	96.34
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.29
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.11
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.05
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.05
d1pj5a3	119	N,N-dimethylglycine oxidase {Arthrobacter globifor	95.93
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	95.86
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	95.81
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	95.8
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.77
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	95.68
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	95.64
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	95.62
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.25
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.14
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	95.12
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	95.1
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	94.99
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	94.92
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	94.82
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	94.53
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	94.48
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	94.48
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	94.26
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	94.25
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	94.2
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	94.15
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	94.14
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	94.1
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	93.93
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	93.38
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	93.33
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	93.32
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	93.31
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	93.17
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.11
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	93.1
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	93.07
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	93.0
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	92.93
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	92.89
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	92.87
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	92.78
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	92.73
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	92.68
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	92.59
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	92.55
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	92.53
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	92.47
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	92.42
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	92.42
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	92.33
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	92.28
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	92.27
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	91.94
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	91.71
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	91.7
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	91.7
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	91.63
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	91.56
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	91.43
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	90.97
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	90.91
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	90.74
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	90.72
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	90.68
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	90.56
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	90.46
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	90.28
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	90.14
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	90.0
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	89.95
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	89.78
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	89.69
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	89.6
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	89.58
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	89.16
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	89.03
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	88.91
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	88.71
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	88.59
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	88.55
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	88.43
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	88.2
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	88.14
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	88.12
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	88.09
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	87.87
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	87.81
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	87.81
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	87.68
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	87.65
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	87.63
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	87.53
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	87.43
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	87.25
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	87.14
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	86.97
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	86.96
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	86.71
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	86.7
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	86.65
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	86.54
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	86.38
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	86.36
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	86.34
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	86.24
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	86.09
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	85.78
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	85.71
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	85.6
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	85.52
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	85.48
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	85.41
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	85.39
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	85.0
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	84.87
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	84.71
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	84.53
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	84.33
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	84.23
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	83.15
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	83.05
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	82.96
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	82.8
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	82.79
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	82.76
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	82.73
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	82.44
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	82.39
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	82.23
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	81.41
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	80.96
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	80.83
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	80.8
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	80.55

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.97  E-value=1.8e-32  Score=257.46  Aligned_cols=215  Identities=20%  Similarity=0.282  Sum_probs=178.9

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEeccC-cccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKM-KICLVEKEK-ELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK  135 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~~-~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (473)
                      .||+|||||++|+++|++|+++  |. +|+||||+. ..++++|+++.|+++..   .+......+...+...+.++.+.
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~--G~~~V~liE~~~~~~~~gas~~~~G~i~~~---~~~~~~~~l~~~~~~~~~~~~~~   76 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTR--GWNNITVLDQGPLNMPGGSTSHAPGLVFQT---NPSKTMASFAKYTVEKLLSLTED   76 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT--TCCCEEEECSSCTTCCCSGGGTCCCEECCC---CSCHHHHHHHHHHHHHHHHCEET
T ss_pred             CCEEEECcCHHHHHHHHHHHHc--CCCcEEEEeCCCCCCCccccccccceeccC---CCCHHHHHHHHHHHHHHHhhhhc
Confidence            5899999999999999999999  75 799999983 23467888999988753   34444566777788888777655


Q ss_pred             cCCCCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCccc---ceeEecCCccceeHHHHHHHHH
Q psy7710         136 RNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG---VKAIHSPNTGIVDWGLVTRVMG  211 (473)
Q Consensus       136 ~~~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~l~  211 (473)
                      ....+.+.|.+....+. ..+......+..+..+. +.++++.+++.+.+|....   .++++.+.+++++|..++..+.
T Consensus        77 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~l~~~l~  155 (305)
T d1pj5a2          77 GVSCFNQVGGLEVATTETRLADLKRKLGYAAAWGI-EGRLLSPAECQELYPLLDGENILGGLHVPSDGLASAARAVQLLI  155 (305)
T ss_dssp             TEESEECCCEEEEESSHHHHHHHHHHHHHHHHHTC-CCEEECHHHHHHHCTTSCGGGCCEEEEETTCEEECHHHHHHHHH
T ss_pred             ccccccccccccccchhhhHHHHHHHHHHHHhhcc-cccccchHHhhhhcccccccccccceecccccccchhhhhhhHH
Confidence            55567888999888877 66777777777777787 7899999999998886543   6789999999999999999999


Q ss_pred             HHHHHcCcEEEeCceEEEEEEcCCeEE-EEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeE
Q psy7710         212 EEFCELGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGE  281 (473)
Q Consensus       212 ~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~  281 (473)
                      +.++++|++|+++++|++|..+++++. |+|++| +++||.||+|+|+|+.+|++++|+.+  |+.+...+
T Consensus       156 ~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g-~i~a~~VV~aaG~~s~~l~~~~g~~l--P~~~~~~~  223 (305)
T d1pj5a2         156 KRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAGFWGAKIGAMIGMAV--PPDGGPLL  223 (305)
T ss_dssp             HHHHHTTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCGGGHHHHHHTTTCCC--CTTSCCEE
T ss_pred             hhhhcccccccCCceEEEEEEeCCEEEEEeccce-eEECCEEEEecchhHHHHHHHcCCcc--cccccccc
Confidence            999999999999999999999888764 999998 89999999999999999999999865  44554433

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.97  E-value=3.1e-30  Score=238.47  Aligned_cols=216  Identities=22%  Similarity=0.269  Sum_probs=179.0

Q ss_pred             CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHH
Q psy7710          55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFD  134 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (473)
                      ..++||+|||||++|+++|++|+++  |.+|+||||+ .+++++|++|.|+++....+.......++...+.+.|.++..
T Consensus         2 ~~~~DvvIIGaGi~Gls~A~~La~~--G~~V~vlE~~-~~~~gaS~~~~G~l~~~~~~~~~~~~~~l~~~s~~~~~~l~~   78 (276)
T d1ryia1           2 KRHYEAVVIGGGIIGSAIAYYLAKE--NKNTALFESG-TMGGRTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGE   78 (276)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSS-STTTTHHHHCCCBCCGGGSCSSCSHHHHHHHHHHHHTTTHHH
T ss_pred             CccCCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCC-CCCCCcccccccccccccccccccccchhhhhhhhhcccccc
Confidence            3579999999999999999999999  9999999998 799999999999998887666666667777777777766544


Q ss_pred             h------cCCCCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCccc--ceeEecCCccceeHHH
Q psy7710         135 K------RNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG--VKAIHSPNTGIVDWGL  205 (473)
Q Consensus       135 ~------~~~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~  205 (473)
                      +      ..+.+...|.+.+..++ +...++      ...+....++++..++.+..|....  .++++.+.++.++|..
T Consensus        79 ~~~~~~g~~~~~~~~g~l~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~g~i~~~~  152 (276)
T d1ryia1          79 ELYALSGVDIRQHNGGMFKLAFSEEDVLQLR------QMDDLDSVSWYSKEEVLEKEPYASGDIFGASFIQDDVHVEPYF  152 (276)
T ss_dssp             HHHHHHCCCCCCBCCCEEEEESSHHHHHHHH------TTTTSTTEEEEEHHHHHHHCTTSCTTCCEEEEETTCCBCCHHH
T ss_pred             ccccccccccccccccceeeeeecccccccc------cccccccccccccccccccCcccccceeEEEEeccceeeeccc
Confidence            3      23457888999888765 333221      1223335678999999999987764  7889999999999999


Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeE
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGE  281 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~  281 (473)
                      ++..|.+.++++|++|+++++|++|..+++.+.|+|++| +++||.||+|+|+||..|++++|++. +...|..++
T Consensus       153 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g-~i~a~~vV~AaG~~s~~l~~~~G~~~-~~~~p~~~~  226 (276)
T d1ryia1         153 VCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWSGMFFKQLGLNN-ADGKPYIGR  226 (276)
T ss_dssp             HHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGTHHHHHHTTCCC-CSSCCEEEE
T ss_pred             chhHHHHHHHHcCCEEecceEEEeEEeecceEEEecCCe-EEEcCEEEECCCccHHHHHhhcCCCc-ccccceecc
Confidence            999999999999999999999999999888899999998 89999999999999999999999874 334554443

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.96  E-value=5.4e-28  Score=223.87  Aligned_cols=210  Identities=22%  Similarity=0.317  Sum_probs=175.7

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC-CCcceEEeeccCCCchhHHHHHHHhHHHHHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG-HNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFD  134 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (473)
                      .+|||+|||||++|+++|++|+++  |.+|+||||.+..++++++ .+.+++...  +........+...+.+.|.++.+
T Consensus         2 ~~yDvvIIGaGi~Gls~A~~La~~--G~~V~viE~~~~~~~~~s~~~~~~~~~~~--~~~~~~~~~l~~~s~~~~~~l~~   77 (281)
T d2gf3a1           2 THFDVIVVGAGSMGMAAGYQLAKQ--GVKTLLVDAFDPPHTNGSHHGDTRIIRHA--YGEGREYVPLALRSQELWYELEK   77 (281)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSCSSCSSSSSCSSEEEECSS--CTTCGGGHHHHHHHHHHHHHHHH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCCCCCcccccCCCcceeecc--cCCcchhhhhcccccceeecchh
Confidence            479999999999999999999999  9999999998544433333 333333332  23344456788889999999999


Q ss_pred             hcCCC-CcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCccc---ceeEecCCccceeHHHHHHHH
Q psy7710         135 KRNIP-YKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKG---VKAIHSPNTGIVDWGLVTRVM  210 (473)
Q Consensus       135 ~~~~~-~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~l  210 (473)
                      +.+.+ +...|.+......+...+.+..+..+..+. ..++++.+++.+.+|.+..   .++++.+.+++++|..++..|
T Consensus        78 e~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~-~~~~l~~~e~~~~~p~~~~~~~~~~~~~~~~g~~~p~~~~~~l  156 (281)
T d2gf3a1          78 ETHHKIFTKTGVLVFGPKGESAFVAETMEAAKEHSL-TVDLLEGDEINKRWPGITVPENYNAIFEPNSGVLFSENCIRAY  156 (281)
T ss_dssp             HCSSCCEECCCEEEEEETTCCHHHHHHHHHHHHTTC-CCEEEETHHHHHHSTTCCCCTTEEEEEETTCEEEEHHHHHHHH
T ss_pred             hhhhccccccceeeeeecchhhhhhhhhhhhccccc-hhhhhhhHhhhhhhhcccccccceeeecccccccccccccccc
Confidence            98876 567787777766666667777888888888 7899999999999998653   678999999999999999999


Q ss_pred             HHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710         211 GEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSL  271 (473)
Q Consensus       211 ~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~  271 (473)
                      .+.++++|++++++++|++|..++++|.|+|++| +++||.||+|+|+|+..|++++|+..
T Consensus       157 ~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~~g-~i~a~~VViAaG~~s~~l~~~lg~~~  216 (281)
T d2gf3a1         157 RELAEARGAKVLTHTRVEDFDISPDSVKIETANG-SYTADKLIVSMGAWNSKLLSKLNLDI  216 (281)
T ss_dssp             HHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE-EEEEEEEEECCGGGHHHHGGGGTEEC
T ss_pred             ccccccccccccCCcEEEEEEEECCEEEEEECCc-EEEcCEEEECCCCcchhhHHhcCCcc
Confidence            9999999999999999999999999999999998 89999999999999999999988653

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.67  E-value=3.3e-16  Score=141.15  Aligned_cols=175  Identities=19%  Similarity=0.215  Sum_probs=101.3

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHhc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDKR  136 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (473)
                      +|||+|||||++|+++|+.|+++  |.+|+||||++.+++.......+............+.. .............   
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~~--G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---   75 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAEE--GANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVK-HIPGNGRFLYSAF---   75 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHH-TCTBTGGGGHHHH---
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCCCCCcceeccCCcceecccccccchhhc-ccccchhhhhhhh---
Confidence            69999999999999999999999  99999999987665432211111111000000000000 0000000000000   


Q ss_pred             CCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHHH
Q psy7710         137 NIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFCE  216 (473)
Q Consensus       137 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  216 (473)
                                      ...........+...++ .....              ..+...+.  ......+.+.|.+.+++
T Consensus        76 ----------------~~~~~~~~~~~~~~~g~-~~~~~--------------~~~~~~~~--~~~~~~i~~~L~~~~~~  122 (251)
T d2i0za1          76 ----------------SIFNNEDIITFFENLGV-KLKEE--------------DHGRMFPV--SNKAQSVVDALLTRLKD  122 (251)
T ss_dssp             ----------------HHSCHHHHHHHHHHTTC-CEEEC--------------GGGEEEET--TCCHHHHHHHHHHHHHH
T ss_pred             ----------------hhhhhHHHHHHHHhcCC-ccccc--------------cccceecc--cccHHHHHHHHHHHHHH
Confidence                            00001112222333343 11100              00011111  11235678889999999


Q ss_pred             cCcEEEeCceEEEEEEcCCeEE-EEcCCCcEEEcCEEEEcCCcChH----------HHHHhcCCC
Q psy7710         217 LGGEIRLNQQVESFKENPESVT-ISTKQGDHLESSYALVCAGLQAD----------EMALKSGCS  270 (473)
Q Consensus       217 ~Gv~i~~~~~V~~i~~~~~~v~-v~~~~g~~i~ad~VV~aaG~~s~----------~l~~~~g~~  270 (473)
                      .|++|+++++|++|..+++.+. |.+.+|+.++||.||+|+|+.|-          .+++.+|++
T Consensus       123 ~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~vI~AtGg~S~p~~Gs~g~g~~~a~~~~~~  187 (251)
T d2i0za1         123 LGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVGGKSVPQTGSTGDGYAWAEKAGHT  187 (251)
T ss_dssp             TTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCCCSSSGGGSCSSHHHHHHHHTTCC
T ss_pred             cCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecCeEEEccCCccccccCCCcccchhcccceee
Confidence            9999999999999998877654 78888889999999999998751          467777654

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.64  E-value=1e-15  Score=142.25  Aligned_cols=187  Identities=20%  Similarity=0.142  Sum_probs=107.6

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK  135 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (473)
                      .++||+|||+|++|+++|++|+++  |.+|+||||.+ ..+++|..+.|.+.....  . .........+.+.+.+....
T Consensus        15 e~~DVlVIG~G~aGl~aA~~la~~--G~~V~lvEK~~-~~gG~s~~s~G~~~~~~~--~-~~~~~~~~d~~~~~~~d~~~   88 (308)
T d1y0pa2          15 DTVDVVVVGSGGAGFSAAISATDS--GAKVILIEKEP-VIGGNAKLAAGGMNAAWT--D-QQKAKKITDSPELMFEDTMK   88 (308)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSS-SSCTTGGGCCSCEECSSC--H-HHHHTTCCCCHHHHHHHHHH
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC--CCcEEEEecCC-CCCCcceecCCCCccccc--h-hhhhhhccchHHHHHHHHHh
Confidence            579999999999999999999999  99999999994 566777777666543211  0 00000000011111111111


Q ss_pred             cCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHHH
Q psy7710         136 RNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEFC  215 (473)
Q Consensus       136 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  215 (473)
                      .+.... ...+..   .-.+...+.++++.++|+ ++.....       .........+.+......+..+...+.+.++
T Consensus        89 ~~~~~~-d~~lv~---~~~~~~~~~i~~L~~~Gv-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~  156 (308)
T d1y0pa2          89 GGQNIN-DPALVK---VLSSHSKDSVDWMTAMGA-DLTDVGM-------MGGASVNRAHRPTGGAGVGAHVVQVLYDNAV  156 (308)
T ss_dssp             HTTTCS-CHHHHH---HHHHHHHHHHHHHHHTTC-CCCEEEC-------CTTCSSCCEEESTTTCCHHHHHHHHHHHHHH
T ss_pred             hhhhcc-chHHHH---HHHHhhhHHHHHHHHcCC-Ccccccc-------ccccccccccccccccchHHHHHHHHHHHHH
Confidence            000000 000000   001222344555666665 2221110       0000122334444445556778899999999


Q ss_pred             HcCcEEEeCceEEEEEEcCC-eE---EEEcCCC--cEEEcCEEEEcCCcCh
Q psy7710         216 ELGGEIRLNQQVESFKENPE-SV---TISTKQG--DHLESSYALVCAGLQA  260 (473)
Q Consensus       216 ~~Gv~i~~~~~V~~i~~~~~-~v---~v~~~~g--~~i~ad~VV~aaG~~s  260 (473)
                      +.|++|+++++|+++..+++ .+   .+...++  ..++||.||+|||+++
T Consensus       157 ~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~  207 (308)
T d1y0pa2         157 KRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFA  207 (308)
T ss_dssp             HTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             hccceEEEeeccchhhhhcccccccccccccccceeEeecCeEEEccCccc
Confidence            99999999999999987653 33   2333333  3689999999999995

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.60  E-value=6.1e-15  Score=132.80  Aligned_cols=66  Identities=14%  Similarity=0.225  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCe----EEEEcCCCcEEEcCEEEEcCCcCh----------HHHHHhcCC
Q psy7710         204 GLVTRVMGEEFCELGGEIRLNQQVESFKENPES----VTISTKQGDHLESSYALVCAGLQA----------DEMALKSGC  269 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~----v~v~~~~g~~i~ad~VV~aaG~~s----------~~l~~~~g~  269 (473)
                      ..+.+.|.+.+++.|++|+++++|+++...++.    +.+.+++ .+++||.||+|+|+.|          -.+++.+|+
T Consensus       109 ~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~-~~~~a~~VIiAtGG~S~p~~G~~g~g~~~a~~~~~  187 (253)
T d2gqfa1         109 EQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNS-TQWQCKNLIVATGGLSMPGLGATPFGYQIAEQFGI  187 (253)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETT-EEEEESEEEECCCCSSCGGGTCCSHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCC-EEEEeCEEEEcCCcccccccCCCchHHHHHHhccc
Confidence            567788999999999999999999999876542    3455555 4899999999999764          257777776


Q ss_pred             C
Q psy7710         270 S  270 (473)
Q Consensus       270 ~  270 (473)
                      +
T Consensus       188 ~  188 (253)
T d2gqfa1         188 P  188 (253)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.59  E-value=3.8e-15  Score=138.84  Aligned_cols=191  Identities=18%  Similarity=0.127  Sum_probs=109.0

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHH-HHHHHH
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNL-AYEYFD  134 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  134 (473)
                      +++||+|||+|++|+++|++|+++  |.+|+||||. ...+++|..+.|.+.....  . .........+.+. +.++..
T Consensus        18 e~~DVvVIGaG~aGl~AA~~aa~~--G~~V~vlEK~-~~~gG~S~~a~Ggi~a~~~--~-~~~~~g~~d~~~~~~~d~~~   91 (317)
T d1qo8a2          18 ETTQVLVVGAGSAGFNASLAAKKA--GANVILVDKA-PFSGGNSMISAGGMNAVGT--K-QQTAHGVEDKVEWFIEDAMK   91 (317)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHH--TCCEEEECSS-SSSCTTGGGCCSCEECSSC--H-HHHHTTCCCCHHHHHHHHHH
T ss_pred             CccCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCC-CCCCCchhhcCCCcccccc--h-hhhhcccCCcHHHHHHHHHH
Confidence            579999999999999999999999  9999999999 4666777777766653210  0 0000000001111 111111


Q ss_pred             hcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHHH
Q psy7710         135 KRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEEF  214 (473)
Q Consensus       135 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  214 (473)
                      ......+  ..+.   ..-.+...+.++++.+.|+ .+.....       .........+.+..+......+...|.+.+
T Consensus        92 ~~~~~~d--~~lv---~~~~~~a~~~i~~l~~~Gv-~~~~~~~-------~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~  158 (317)
T d1qo8a2          92 GGRQQND--IKLV---TILAEQSADGVQWLESLGA-NLDDLKR-------SGGARVDRTHRPHGGKSSGPEIIDTLRKAA  158 (317)
T ss_dssp             HTTTCSC--HHHH---HHHHHHHHHHHHHHHHTTC-CCCEEEC-------CTTCSSCCEEECSSSSCHHHHHHHHHHHHH
T ss_pred             hhccccc--hhHH---HHHHhhhhhhhhhHHHhhh-ccccccc-------ccCcccccccccccccccchhhhHHHHHHh
Confidence            1000000  0000   0001112234455556665 2211100       000011223344455555677999999999


Q ss_pred             HHcCcEEEeCceEEEEEEc-CCeE---EEEcCCC--cEEEcCEEEEcCCcCh--HHHHH
Q psy7710         215 CELGGEIRLNQQVESFKEN-PESV---TISTKQG--DHLESSYALVCAGLQA--DEMAL  265 (473)
Q Consensus       215 ~~~Gv~i~~~~~V~~i~~~-~~~v---~v~~~~g--~~i~ad~VV~aaG~~s--~~l~~  265 (473)
                      ++.|++++++++|+++..+ ++.+   .+...++  ..+.||.||+|||+|+  .++.+
T Consensus       159 ~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~~n~~~~~  217 (317)
T d1qo8a2         159 KEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGMNKEMIA  217 (317)
T ss_dssp             HHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTTCHHHHH
T ss_pred             hhccceeeeccchhheeecccccceeeEeecccceEEEEeccceEEeccccccCHHHHH
Confidence            9999999999999999764 4443   3444455  3578999999999985  34444

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.58  E-value=7.1e-15  Score=137.36  Aligned_cols=187  Identities=21%  Similarity=0.180  Sum_probs=106.6

Q ss_pred             CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHH-HHHhHHHHHHHH
Q psy7710          55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKL-CVEGMNLAYEYF  133 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  133 (473)
                      ...+||+|||+|++|+++|+.|+++  |++|+||||.+ ..+++|..+.|.+.....    .....+ ..++.+.+.+..
T Consensus        21 ~et~DVvVIG~G~aGl~aA~~la~~--G~~V~llEk~~-~~gG~s~~s~Ggi~~~~~----~~~~~~~~~d~~~~~~~d~   93 (322)
T d1d4ca2          21 KETTDVVIIGSGGAGLAAAVSARDA--GAKVILLEKEP-IPGGNTKLAAGGMNAAET----KPQAKLGIEDKKQIMIDDT   93 (322)
T ss_dssp             CEECSEEEECSSHHHHHHHHHHHTT--TCCEEEECSSS-SSCTTGGGCCSCEECSSC----HHHHHTTCCCCHHHHHHHH
T ss_pred             CCcceEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCC-CCCCcccccCCcccccCc----hhhhhcccCCCHHHHHHHH
Confidence            3568999999999999999999999  99999999995 555666666665543210    000000 000111111111


Q ss_pred             HhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHHHHHH
Q psy7710         134 DKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRVMGEE  213 (473)
Q Consensus       134 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~~  213 (473)
                      ...+........+.    .-.+...+.++++.++|+ ++..+..      .+.. .....+.+..+......+.+.|.+.
T Consensus        94 ~~~~~~~~d~~~~~----~~~~~~~~~i~~l~~~Gv-~~~~~~~------~~g~-~~~~~~~~~~~~~~~~~~~~~l~~~  161 (322)
T d1d4ca2          94 MKGGRNINDPELVK----VLANNSSDSIDWLTSMGA-DMTDVGR------MGGA-SVNRSHRPTGGAGVGAHVAQVLWDN  161 (322)
T ss_dssp             HHHTTTCSCHHHHH----HHHHTHHHHHHHHHHTTC-CCCEEEC------CTTC-SSCCEEESTTTCCSHHHHHHHHHHH
T ss_pred             HhccccccCHHHhh----hhhhhhhhhhhhhhhhcc-ccccccc------cccc-ccccccccccccchhHHHHHHHHHH
Confidence            11110000000000    001222344555666665 2221110      0000 1122334444445567788999999


Q ss_pred             HHHcCcEEEeCceEEEEEEcC-Ce---EEEEcCCC--cEEEcCEEEEcCCcCh
Q psy7710         214 FCELGGEIRLNQQVESFKENP-ES---VTISTKQG--DHLESSYALVCAGLQA  260 (473)
Q Consensus       214 ~~~~Gv~i~~~~~V~~i~~~~-~~---v~v~~~~g--~~i~ad~VV~aaG~~s  260 (473)
                      +.++|++|+++++|+++..++ +.   +.+...++  ..++||.||+|||+++
T Consensus       162 a~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~~  214 (322)
T d1d4ca2         162 AVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFA  214 (322)
T ss_dssp             HHHTTCEEETTEEEEEEECCSSSCCCEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             HHhcCceEEEeeecccccccccccccceEEEeecccEEEEeCCeEEEcCCCcc
Confidence            999999999999999998754 32   33444333  3589999999999995

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.57  E-value=7.5e-16  Score=138.10  Aligned_cols=197  Identities=18%  Similarity=0.159  Sum_probs=116.0

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC-----cccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHH
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK-----ELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYF  133 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~-----~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (473)
                      +|+|||||++||++|++|+++  |.+|+++|+..     ..+..+|..+++++.+............+.......+....
T Consensus         2 kV~VIGaGi~GlstA~~L~~~--G~~v~v~e~~~i~~~~~~~~~ts~~a~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~   79 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHER--YHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTSEPSNPQEANWNQQTFNYLLSHI   79 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH--HTTTSSSCEEEEEESCCTTSSSGGGSCCBCCCCSSCCSSTHHHHHHHHHHHHHHTTT
T ss_pred             EEEEECchHHHHHHHHHHHHC--CCCceEEeeeeecccCCCCCChhHhhhceecccccccccHHHHHHHHHHHHHhhhhh
Confidence            599999999999999999999  76655555532     33444555555655543222222222222222222222211


Q ss_pred             Hhc---CCCCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHH
Q psy7710         134 DKR---NIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRV  209 (473)
Q Consensus       134 ~~~---~~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  209 (473)
                      ...   ...+...+.+....+. .......        ..+..+.+.......    .....+.+.+..+.+||..++.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~id~~~~~~~  147 (246)
T d1kifa1          80 GSPNAANMGLTPVSGYNLFREAVPDPYWKD--------MVLGFRKLTPRELDM----FPDYRYGWFNTSLILEGRKYLQW  147 (246)
T ss_dssp             TSTTTTTTTEEEEEEEEEESSCCCCCTTTT--------TSEEEEECCHHHHTT----STTCCEEEEEEEEEECHHHHHHH
T ss_pred             ccccCCceeEEEcccEEEecCchhhhhHHh--------hccchhhhccccccC----CcccceEEEccceEEcHHHHHHH
Confidence            111   1223444444454443 2221111        111334444433221    12345667788889999999999


Q ss_pred             HHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEeCc
Q psy7710         210 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLLNP  287 (473)
Q Consensus       210 l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~~~  287 (473)
                      |.+.++++|++|+.. +|+++...           ....+|.||+|+|.|+..+..      +.+.+|.++|.+....
T Consensus       148 L~~~~~~~G~~~~~~-~v~~l~~~-----------~~~~~d~vVnctG~~a~~l~~------d~~~~~~r~~~lr~~~  207 (246)
T d1kifa1         148 LTERLTERGVKFFLR-KVESFEEV-----------ARGGADVIINCTGVWAGVLQP------DPLQVRLEREQLRFGS  207 (246)
T ss_dssp             HHHHHHHTTCEEEEC-CCCCHHHH-----------HHTTCSEEEECCGGGHHHHSC------CTTSCEEEEEEEESSS
T ss_pred             HHHHHHHCCCEEEEe-EeCCHHHh-----------ccCCCCEEEECCcccccccCC------CCCeeccceEEEeeCC
Confidence            999999999998754 45443210           123478999999999987753      5678899999887753

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=99.53  E-value=7.8e-15  Score=132.84  Aligned_cols=198  Identities=15%  Similarity=0.031  Sum_probs=114.7

Q ss_pred             CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCch--hHHHHHHHhHHHHHHH
Q psy7710          55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGT--LKAKLCVEGMNLAYEY  132 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  132 (473)
                      ..+.+|+|||||++|+++|++|+++  |.+|+||||+ .+++++|..+.+.+.++.......  ............+..+
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~--G~~V~vier~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARK--GYSVHILARD-LPEDVSSQTFASPWAGANWTPFMTLTDGPRQAKWEESTFKKW   80 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESS-CTTCTTCTTSSGGGCCCBCCCCSCTTTCHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHC--CCCEEEEeCC-CCCCCcchhhhhhhcccccccccccchhhhhhhhhHHHHHHH
Confidence            3556899999999999999999999  8999999998 688888888888776554321111  1111222222223333


Q ss_pred             HHhcC--CCCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHHhhcCCcccceeEecCCccceeHHHHHHH
Q psy7710         133 FDKRN--IPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIKTIEPYCKGVKAIHSPNTGIVDWGLVTRV  209 (473)
Q Consensus       133 ~~~~~--~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  209 (473)
                      .+...  ..+...+.+.+.... .....     ....... ....++.....       .....+......+|+..++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~l~~~~~~-------~~~~~~~~~~~~~d~~~~~~~  147 (268)
T d1c0pa1          81 VELVPTGHAMWLKGTRRFAQNEDGLLGH-----WYKDITP-NYRPLPSSECP-------PGAIGVTYDTLSVHAPKYCQY  147 (268)
T ss_dssp             HHHTTTTSSEEEEEEEEEESSGGGGGGG-----TTTTTST-TCEECCGGGSS-------TTCEEEEEEEEECCHHHHHHH
T ss_pred             HHHHhhhhhheeccEEEEEecchhhhhH-----HHHhhcc-ccccCchhhcc-------cccccccccceecCHHHHHHH
Confidence            33222  223344444444433 11100     0001111 22223322211       111223344567899999999


Q ss_pred             HHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCCCCceeeeeeEEEEe
Q psy7710         210 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSLEPAIVPFRGEYLLL  285 (473)
Q Consensus       210 l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~~~~~~p~~g~~~~~  285 (473)
                      +.+.+++.|++|+.. +|+++            +.....++.||+|+|.++..+....+    ..+.|.+++...+
T Consensus       148 l~~~~~~~Gv~i~~~-~v~~~------------~~~~~~~~~vv~a~G~~a~~l~~~~~----~~~~~~~~~~~~~  206 (268)
T d1c0pa1         148 LARELQKLGATFERR-TVTSL------------EQAFDGADLVVNATGLGAKSIAGIDD----QARGGPRVEAERI  206 (268)
T ss_dssp             HHHHHHHTTCEEEEC-CCSBG------------GGTCSSCSEEEECCGGGGGTSBTTCC----TTTTSCEEEEEEE
T ss_pred             HHHHHHHCCCEEEEe-Eecch------------HHccccceEEEECCchhhhhhhhhcC----ccccccccceEEE
Confidence            999999999998643 33322            11245689999999999876655433    2345555555544

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=3.4e-14  Score=128.49  Aligned_cols=45  Identities=24%  Similarity=0.395  Sum_probs=40.7

Q ss_pred             CCCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC
Q psy7710          54 SPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG  100 (473)
Q Consensus        54 ~~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~  100 (473)
                      |+.+|||||||||++|++||+.|+++  |.+|+|||+++.+||.++.
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~--G~~V~vlE~~~~~GG~~~t   46 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVD--GKKVLHIDKQDHYGGEAAS   46 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCGGGCE
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHC--CCCEEEEcCCCCCCcceEE
Confidence            34789999999999999999999999  9999999999888877643

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.46  E-value=1.3e-12  Score=122.50  Aligned_cols=60  Identities=12%  Similarity=0.066  Sum_probs=48.5

Q ss_pred             eHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEE---EE-cCCC--cEEEcCEEEEcCCcChH
Q psy7710         202 DWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVT---IS-TKQG--DHLESSYALVCAGLQAD  261 (473)
Q Consensus       202 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~---v~-~~~g--~~i~ad~VV~aaG~~s~  261 (473)
                      .+..+...|.+.+++.|++|+.++.+.++..+++++.   +. ..+|  ..+.|+.||+|||++..
T Consensus       156 ~G~~i~~~l~~~~~~~gv~i~~~~~~~~li~~~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~  221 (336)
T d2bs2a2         156 TGHTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGR  221 (336)
T ss_dssp             HHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGG
T ss_pred             CHHHHHHHHHHHHHhccccccceeeeeecccccccccceeEEeccCCcEEEEecCeEEEecccccc
Confidence            3567888899999999999999999999998887553   22 3455  35789999999999863

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=1e-12  Score=121.61  Aligned_cols=185  Identities=10%  Similarity=-0.034  Sum_probs=94.3

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCCCchhHHHHHHHhHHHHHHHHHh
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYKPGTLKAKLCVEGMNLAYEYFDK  135 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (473)
                      .++||+|||+|++||++|++++++++|.+|+|+||.. +.++.|..+.|.+..... ..++.. ..       +.+....
T Consensus         4 ~~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~-~~~g~s~~A~GGi~a~~~-~~Ds~e-~~-------~~dt~~~   73 (311)
T d1kf6a2           4 FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVY-PMRSHTVAAEGGSAAVAQ-DHDSFE-YH-------FHDTVAG   73 (311)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSC-GGGSGGGGCCSCEECCCS-TTCCHH-HH-------HHHHHHH
T ss_pred             eecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCC-CCCCcHHHHhhhHhhhcC-CCCCHH-HH-------HHHHHhh
Confidence            4689999999999999999999987788999999984 544445444443332221 111111 00       0011000


Q ss_pred             cCCCCcccCeEEEEeCc-ChhhHHHHHHHHHhCCCCcceeeCHHHHH-hhcCCcccceeEecCCccceeHHHHHHHHHH-
Q psy7710         136 RNIPYKKCGKLIVALNE-QLEPLHDLYERSIQNNVKDVRLVSAEEIK-TIEPYCKGVKAIHSPNTGIVDWGLVTRVMGE-  212 (473)
Q Consensus       136 ~~~~~~~~g~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~l~~-  212 (473)
                      -. .... ..+    -. -.+.....+.++.+++. .+......... ..+.... ....+...  ..........+.+ 
T Consensus        74 g~-~~~d-~~~----v~~~~~~~~~~i~~L~~~g~-~f~~~~~~~~~~~~~~~~~-~~r~~~~~--~~~g~~~~~~~l~~  143 (311)
T d1kf6a2          74 GD-WLCE-QDV----VDYFVHHCPTEMTQLELWGC-PWSRRPDGSVNVRRFGGMK-IERTWFAA--DKTGFHMLHTLFQT  143 (311)
T ss_dssp             TT-TCSC-HHH----HHHHHHHHHHHHHHHHHTTC-CCCBCTTSSBCCBCCTTCS-SCCEECST--TCHHHHHHHHHHHH
T ss_pred             cc-CccH-HHH----HHHHHHhhhHhHHhhhhccc-ccccccccccccccccccc-cccccccc--cchhhHHHHhHHHH
Confidence            00 0000 000    00 01122233444555554 21111100000 0000000 00111111  1112334444444 


Q ss_pred             HHHHcCcEEEeCceEEEEEEcCCeEE----EEcCCCc--EEEcCEEEEcCCcCh
Q psy7710         213 EFCELGGEIRLNQQVESFKENPESVT----ISTKQGD--HLESSYALVCAGLQA  260 (473)
Q Consensus       213 ~~~~~Gv~i~~~~~V~~i~~~~~~v~----v~~~~g~--~i~ad~VV~aaG~~s  260 (473)
                      ..+..+++++.+++|++|..+++.+.    +...+|+  .+.|+.||+|||+++
T Consensus       144 ~~~~~~v~i~~~~~v~~Ll~d~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g  197 (311)
T d1kf6a2         144 SLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAG  197 (311)
T ss_dssp             HTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCG
T ss_pred             HHccCcceeEeeeEeeeeEecCCcceeEEEEEcCCCcEEEEECCEEEEcCCCcc
Confidence            44456899999999999998887653    2345663  468999999999986

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.35  E-value=1.4e-12  Score=119.29  Aligned_cols=57  Identities=16%  Similarity=0.243  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHcCc--EEEeCceEEEEEEc--CCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         204 GLVTRVMGEEFCELGG--EIRLNQQVESFKEN--PESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       204 ~~~~~~l~~~~~~~Gv--~i~~~~~V~~i~~~--~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      ..+.+.|.+.+++.++  .|+++++|+++..+  .+.|.|++.++.++++|.||+|+|..+
T Consensus        85 ~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls  145 (298)
T d1w4xa1          85 PEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLS  145 (298)
T ss_dssp             HHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCC
T ss_pred             chHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccc
Confidence            4566778888888887  59999999999854  367999999888999999999999875

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=5.2e-12  Score=119.42  Aligned_cols=46  Identities=20%  Similarity=0.303  Sum_probs=41.4

Q ss_pred             HHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcC
Q psy7710         214 FCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ  259 (473)
Q Consensus       214 ~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~  259 (473)
                      +++.|++|+++++|++|..+++++.|++.+|.+++||+||+|++..
T Consensus       217 ~~~~g~~i~~~~~v~~I~~~~~~v~v~~~~g~~~~ad~vI~a~p~~  262 (383)
T d2v5za1         217 MDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPT  262 (383)
T ss_dssp             HHHHGGGEEESCCEEEEECSSSSEEEEETTSCEEEESEEEECSCGG
T ss_pred             HHHcCCeEEecCcceEEEecCCeEEEEECCCCEEECCEEEECCCHH
Confidence            4567999999999999999999999999999899999999998754

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=8.4e-12  Score=96.86  Aligned_cols=52  Identities=15%  Similarity=0.247  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCC-eEEEEcCCCcEEEcCEEEEcCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPE-SVTISTKQGDHLESSYALVCAG  257 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~-~v~v~~~~g~~i~ad~VV~aaG  257 (473)
                      +.+.+.+.++++|+++++++.|+++..+++ .+.+++++|+++++|.||+|+|
T Consensus        64 ~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          64 ISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             HHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             hHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence            556688888999999999999999987754 5789999998999999999998

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=1.7e-11  Score=114.36  Aligned_cols=179  Identities=10%  Similarity=0.015  Sum_probs=99.3

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEEeeccCC-CchhHHHHHHHhH--------
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVHAGIYYK-PGTLKAKLCVEGM--------  126 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~~~~~~~-~~~~~~~~~~~~~--------  126 (473)
                      +++||+|||+|++||++|++++++  |.+|+|+||.+ +.++.|..+.|.+....... .++.. ....+..        
T Consensus         6 ~~~DVlVVG~G~AGl~AAl~aa~~--G~~V~lleK~~-~~gg~s~~A~GGi~a~~~~~~~Ds~e-~~~~Dtl~aG~~l~d   81 (330)
T d1neka2           6 REFDAVVIGAGGAGMRAALQISQS--GQTCALLSKVF-PTRSHTVSAQGGITVALGNTHEDNWE-WHMYDTVKGSDYIGD   81 (330)
T ss_dssp             EEESCEEECCSHHHHHHHHHHHHT--TCCCEEECSSC-GGGSGGGGCCSCEECCCCSSSCCCHH-HHHHHHHHHHTSCSC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHc--CCeEEEEeCCC-CCCCcHHHHhhhHheEcCCCCCCCHH-HHHHHHHHhhhhccC
Confidence            579999999999999999999999  99999999985 44444444444443322111 12211 1111110        


Q ss_pred             -HHHHHHHHhcCCCCcccCeEEEEeCcChhhHHHHHHHHHhCCCCcceeeCHHHHHhh-cCCccc-ce---eEecCCccc
Q psy7710         127 -NLAYEYFDKRNIPYKKCGKLIVALNEQLEPLHDLYERSIQNNVKDVRLVSAEEIKTI-EPYCKG-VK---AIHSPNTGI  200 (473)
Q Consensus       127 -~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~-~p~~~~-~~---~~~~~~~~~  200 (473)
                       +..+.+                     .+...+.+.++..+|+ .+........... ...... ..   .......+.
T Consensus        82 ~~~v~~l---------------------~~~~~~~i~~L~~~Gv-~f~~~~~g~~~~~~~g~~s~~~~~~~~~~~~~~~d  139 (330)
T d1neka2          82 QDAIEYM---------------------CKTGPEAILELEHMGL-PFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAAD  139 (330)
T ss_dssp             HHHHHHH---------------------HHHHHHHHHHHHHTTC-CCCBCSCBTTBCCCSSBCEEECTTSSSEEEECCTT
T ss_pred             HHHHHHH---------------------HHHhHHHHHHHhhccc-cccccCCCceehhccCcccccccCcccccccccCC
Confidence             001111                     1122334455566665 2221111110000 000000 00   000011112


Q ss_pred             eeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcC-CeE----EEEcCCC--cEEEcCEEEEcCCcCh
Q psy7710         201 VDWGLVTRVMGEEFCELGGEIRLNQQVESFKENP-ESV----TISTKQG--DHLESSYALVCAGLQA  260 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~v----~v~~~~g--~~i~ad~VV~aaG~~s  260 (473)
                      .....+...|.+++++.+++++.++.+.++..++ +.+    .....+|  ..+.|+.||+|+|++.
T Consensus       140 ~~G~~i~~~L~~~~~~~~v~~~~~~~~~~l~~~~~~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG~~  206 (330)
T d1neka2         140 RTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAG  206 (330)
T ss_dssp             CHHHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEEEEETTTCCEEEEEESCEEECCCCCG
T ss_pred             ccHHHHHHHHHHHHHhcCCeEEEEEEEEEeeeeccccceeeeeEEccCCcEEEEeccEEEEcCCCcc
Confidence            2246788889999999999999999999987743 322    2444555  3578999999999986

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.31  E-value=4.6e-13  Score=124.16  Aligned_cols=41  Identities=37%  Similarity=0.525  Sum_probs=37.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG  100 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~  100 (473)
                      +||+|||||++||++|++|+++  |.+|+|+|+++.+||.+.+
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~--G~~V~vlE~~~~~GG~~~t   41 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSR--GTDAVLLESSARLGGAVGT   41 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTT--TCCEEEECSSSSSBTTCCE
T ss_pred             CeEEEECCCHHHHHHHHHHHhC--CCCEEEEecCCCCCceEEE
Confidence            4899999999999999999999  9999999999999987643

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.25  E-value=4.2e-11  Score=93.24  Aligned_cols=52  Identities=17%  Similarity=0.187  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCC---cEEEcCEEEEcCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQG---DHLESSYALVCAG  257 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g---~~i~ad~VV~aaG  257 (473)
                      +...+.+.++++|++++++++|+++..+++++.++..++   +++.||.||+|+|
T Consensus        65 i~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          65 VAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             HHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             hHHHHHHHHHhcCceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence            556688888999999999999999999888877665433   5789999999998

>d1ryia2 d.16.1.3 (A:219-306) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.25  E-value=2e-12  Score=95.06  Aligned_cols=87  Identities=17%  Similarity=0.258  Sum_probs=62.4

Q ss_pred             eeeeeeEEEEeCcCcccCcccccccCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcc
Q psy7710         275 IVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGF  354 (473)
Q Consensus       275 ~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (473)
                      ++|+|||++.++.+... ....++        ..++|+.|+.+|.+++|+|.+..    +++.. .+++           
T Consensus         1 l~PvKGq~l~v~~~~~~-~~~~i~--------~~~~yiip~~~g~~~iG~T~e~~----~~d~~-~~~~-----------   55 (88)
T d1ryia2           1 FLPVKGECLSVWNDDIP-LTKTLY--------HDHCYIVPRKSGRLVVGATMKPG----DWSET-PDLG-----------   55 (88)
T ss_dssp             CEEEEEEEEEEECCSSC-CCSEEE--------ETTEEEEECTTSEEEEECCCEET----CCCCS-CCHH-----------
T ss_pred             CCCCCcEEEEEECCCCc-cCCEEe--------CCCEEEEECCCCCEEEccEEEEC----CCCCC-CCHH-----------
Confidence            58999999999765321 122211        12579999999999999998753    22221 1111           


Q ss_pred             hhccchhhhhchHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceEe
Q psy7710         355 WRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQA  405 (473)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~~  405 (473)
                                +         .+.+++++.+++|.|.+.+|++.|+|+||+|
T Consensus        56 ----------~---------~~~l~~~a~~~~P~l~~~~v~~~waGlRP~t   87 (88)
T d1ryia2          56 ----------G---------LESVMKKAKTMLPAIQNMKVDRFWAGLRPGT   87 (88)
T ss_dssp             ----------H---------HHHHHHHHHHHCGGGGGSEEEEEEEEEEEEC
T ss_pred             ----------H---------HHHHHHHHHHHCCCcCCCcEeEEEEeeCCCC
Confidence                      1         3456799999999999999999999999983

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=5.3e-11  Score=95.27  Aligned_cols=53  Identities=21%  Similarity=0.249  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCc
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGL  258 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~  258 (473)
                      +...+.+.++++|+++++++.|+++..+++.+.+++++|+++.||.||+|+|.
T Consensus        85 ~~~~~~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2          85 LSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGL  137 (137)
T ss_dssp             HHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCE
T ss_pred             HHHHHHHHHHhCCcEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeecC
Confidence            55567888899999999999999999989999999999989999999999994

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.23  E-value=2.4e-11  Score=113.55  Aligned_cols=58  Identities=14%  Similarity=0.021  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCC------cEEEcCEEEEcCCcCh
Q psy7710         203 WGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQG------DHLESSYALVCAGLQA  260 (473)
Q Consensus       203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g------~~i~ad~VV~aaG~~s  260 (473)
                      ...+.+.|...++..+..|+++++|++|+.++++|.|++.++      ....+|+||+|+|.++
T Consensus       112 ~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~~~~~d~VI~AtG~~s  175 (335)
T d2gv8a1         112 RHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYE  175 (335)
T ss_dssp             HHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEEEEESEEEECCCSSS
T ss_pred             hHHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEecCCCCeEEEEEeeEEEEcccccc
Confidence            356677777788888889999999999999999988775432      1456999999999986

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.22  E-value=7e-11  Score=93.86  Aligned_cols=52  Identities=23%  Similarity=0.342  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcC--CeE-EEEcCCCcEEEcCEEEEcCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENP--ESV-TISTKQGDHLESSYALVCAG  257 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~~v-~v~~~~g~~i~ad~VV~aaG  257 (473)
                      +.+.+.+.++++|+++++++.|+++....  ..+ .+.+++|.+++||.||+|+|
T Consensus        79 ~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          79 VSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             HHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             hhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            44556777889999999999999998754  333 48889998999999999998

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=99.20  E-value=6.9e-11  Score=108.83  Aligned_cols=48  Identities=21%  Similarity=0.297  Sum_probs=33.4

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccCCCcceEE
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTGHNSGVVH  107 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~~~~g~~~  107 (473)
                      .++||||||+|++||++|+.+++.  | +|+||||.+ +.+++|..+.|.+.
T Consensus         6 ~~~DVvVVG~G~AGl~AA~~a~~~--g-~V~llEK~~-~~gG~s~~a~Ggi~   53 (305)
T d1chua2           6 HSCDVLIIGSGAAGLSLALRLADQ--H-QVIVLSKGP-VTEGSTFYAQGGIA   53 (305)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTTT--S-CEEEECSSC-TTC-----------
T ss_pred             ccCCEEEECccHHHHHHHHHhhcC--C-CEEEEECCC-CCCCchHHhCcceE
Confidence            579999999999999999999887  7 999999994 55666666655444

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=99.20  E-value=3e-11  Score=108.80  Aligned_cols=47  Identities=11%  Similarity=0.133  Sum_probs=42.5

Q ss_pred             HcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHH
Q psy7710         216 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADE  262 (473)
Q Consensus       216 ~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~  262 (473)
                      ..++.++++++|+++..+++++.+++.+|.++++|.+|.|.|.++..
T Consensus       108 ~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~s~~  154 (265)
T d2voua1         108 FGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASVV  154 (265)
T ss_dssp             HCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCHH
T ss_pred             cccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEeccccccccc
Confidence            35788999999999999999999999999999999999999999743

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.19  E-value=1.1e-10  Score=90.96  Aligned_cols=48  Identities=13%  Similarity=0.291  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAG  257 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG  257 (473)
                      +.+.+.+.++++|+++++++.|+++..  +  .|.+.+|.++.||.||+|+|
T Consensus        74 ~~~~~~~~l~~~GV~i~~~~~v~~~~~--~--~v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          74 LADFVARYHAAQGVDLRFERSVTGSVD--G--VVLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             HHHHHHHHHHTTTCEEEESCCEEEEET--T--EEEETTSCEEECSEEEECSC
T ss_pred             HHHHHHHHHHHCCcEEEeCCEEEEEeC--C--EEEECCCCEEECCEEEEeeC
Confidence            455677888999999999999988753  2  35667888999999999998

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=99.18  E-value=6.9e-11  Score=112.49  Aligned_cols=62  Identities=16%  Similarity=0.184  Sum_probs=46.5

Q ss_pred             HHHHHHHcCcEEEeCceEEEEEEcCC----e---EEEEcCCC--cEEEcCE-EEEcCCcC-hHHHHHhcCCCC
Q psy7710         210 MGEEFCELGGEIRLNQQVESFKENPE----S---VTISTKQG--DHLESSY-ALVCAGLQ-ADEMALKSGCSL  271 (473)
Q Consensus       210 l~~~~~~~Gv~i~~~~~V~~i~~~~~----~---v~v~~~~g--~~i~ad~-VV~aaG~~-s~~l~~~~g~~~  271 (473)
                      +...+++.+++|++++.|++|..+++    +   |.+.+.+|  .+++|+. ||+|+|+. |+.|+..+||..
T Consensus       231 ~~p~~~~~nl~i~t~~~V~rI~~~~~~~~~ra~GV~~~~~~g~~~~v~A~keVILsAGAi~SP~LLl~SGIGp  303 (385)
T d1cf3a1         231 LLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGM  303 (385)
T ss_dssp             TGGGTTCTTEEEEESCEEEEEEEECSSSSCEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTBSC
T ss_pred             cCchhcCCcccccCCceEEEEEEcCCCceeEEEEEEEEcCCCCEEEEEeCCEEEEcCchhhCHHHHHhcCCCc
Confidence            44445567899999999999986653    2   33445566  3577876 99999997 899999999863

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.17  E-value=6.3e-11  Score=101.96  Aligned_cols=33  Identities=30%  Similarity=0.521  Sum_probs=31.7

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .|||+|||||++|+++|+++++.  |++|+||+++
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~--G~ktllit~~   34 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQK--GVRVGLLTQS   34 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT--TCCEEEEESC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHC--CCcEEEEEec
Confidence            59999999999999999999999  9999999986

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.16  E-value=8.5e-11  Score=110.07  Aligned_cols=42  Identities=24%  Similarity=0.343  Sum_probs=38.1

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQT   99 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s   99 (473)
                      ...+|+|||||++||++|++|+++  |++|+|+|+.+.+||.+.
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~--G~~V~vlE~~~~~GG~~~   70 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGA--GHQVTVLEASERPGGRVR   70 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHH--TCEEEEECSSSSSBTTCC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC--CCCEEEEeCCCCCCCeeE
Confidence            446899999999999999999999  999999999988988654

>d1kifa2 d.16.1.3 (A:195-287) D-aminoacid oxidase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: D-aminoacid oxidase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.15  E-value=1.3e-11  Score=91.71  Aligned_cols=91  Identities=12%  Similarity=0.082  Sum_probs=60.1

Q ss_pred             eeeeeeEEEEeCcCcccCcccccccCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcc
Q psy7710         275 IVPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGF  354 (473)
Q Consensus       275 ~~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  354 (473)
                      +.|+|||++.++.+...   +.+.............|+.|+.++ +++|+|.+..    +++. ..+++           
T Consensus         1 i~PvrGQil~v~~P~~~---~~~~~~~~~~~~~~~~yivpr~~~-~viG~T~e~~----~~d~-~~~~~-----------   60 (93)
T d1kifa2           1 LQPGRGQIIKVDAPWLK---NFIITHDLERGIYNSPYIIPGLQA-VTLGGTFQVG----NWNE-INNIQ-----------   60 (93)
T ss_dssp             CEEEEEEEEEEECTTCC---SEEEEECTTTCTTCSCEEEECSSS-EEEECCCEET----CCCC-SCCHH-----------
T ss_pred             CccccceEEEEcCCCCc---cceeeccccccCCCceEEEECCCC-EEEEEEeecC----CCCC-CCCHH-----------
Confidence            57999999999765311   111111111112335799999765 8899998753    2221 11111           


Q ss_pred             hhccchhhhhchHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceE
Q psy7710         355 WRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQ  404 (473)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~  404 (473)
                                .         ++.+++++.+++|.|.+++|++.|+|+||+
T Consensus        61 ----------~---------~~~i~~~a~~~~P~l~~~~i~~~~~GlRP~   91 (93)
T d1kifa2          61 ----------D---------HNTIWEGCCRLEPTLKDAKIVGEYTGFRPV   91 (93)
T ss_dssp             ----------H---------HHHHHHHHHHHSGGGGGCEEEEEEEEEEEE
T ss_pred             ----------H---------HHHHHHHHHHHHhhhcCCCeeeEEEeecCC
Confidence                      1         356679999999999999999999999997

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.14  E-value=3e-10  Score=88.15  Aligned_cols=52  Identities=12%  Similarity=0.257  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcC-CeEEEEcCCCcEEEcCEEEEcCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENP-ESVTISTKQGDHLESSYALVCAG  257 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~v~v~~~~g~~i~ad~VV~aaG  257 (473)
                      +...+.+.++++|+++++++.|++|..++ +...+.+++|.++.||.||+|+|
T Consensus        64 ~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          64 LRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             HHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             hhHHHHHHHhhCcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence            55668888999999999999999998765 45568889998999999999998

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.14  E-value=7e-11  Score=91.45  Aligned_cols=50  Identities=26%  Similarity=0.414  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCC--cEEEcCEEEEcCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQG--DHLESSYALVCAG  257 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g--~~i~ad~VV~aaG  257 (473)
                      +.+.+.+.++++|++++++++|+++.  ++...+...++  .+++||.||+|+|
T Consensus        64 ~~~~l~~~l~~~gV~i~~~~~V~~i~--~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          64 LTAPVAESLKKLGIALHLGHSVEGYE--NGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             HHHHHHHHHHHHTCEEETTCEEEEEE--TTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             hHHHHHHHHHhhcceEEcCcEEEEEc--CCeEEEEEcCCCeEEEEcCEEEEecC
Confidence            45567888889999999999999985  33333333332  5799999999998

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.13  E-value=3.7e-10  Score=87.25  Aligned_cols=52  Identities=17%  Similarity=0.213  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHcCcEEEeCceEEEEEEcC-CeEEEEcCCCcEEE-cCEEEEcC
Q psy7710         205 LVTRVMGEEFCELGGEIRLNQQVESFKENP-ESVTISTKQGDHLE-SSYALVCA  256 (473)
Q Consensus       205 ~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~v~v~~~~g~~i~-ad~VV~aa  256 (473)
                      .+.+.+.+.++++|++++++++|+++...+ +.+.+++++|+.++ +|.||+|.
T Consensus        64 ~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          64 SVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred             HHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence            355668888899999999999999998664 56789999997775 69999983

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.13  E-value=3.1e-10  Score=88.09  Aligned_cols=50  Identities=20%  Similarity=0.408  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcC-CC--cEEEcCEEEEc
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTK-QG--DHLESSYALVC  255 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~-~g--~~i~ad~VV~a  255 (473)
                      +.+.+.+.++++|+++++++.|+++..+++++.+... +|  ++++||.||++
T Consensus        65 ~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          65 MAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             HHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred             hHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence            5556788889999999999999999988877765543 33  57899999974

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=99.13  E-value=5.9e-11  Score=113.11  Aligned_cols=61  Identities=18%  Similarity=0.113  Sum_probs=44.2

Q ss_pred             HHHHHHHcCcEEEeCceEEEEEEcC--C-----eEEEEcCCCc--EEEcCE-EEEcCCcC-hHHHHHhcCCC
Q psy7710         210 MGEEFCELGGEIRLNQQVESFKENP--E-----SVTISTKQGD--HLESSY-ALVCAGLQ-ADEMALKSGCS  270 (473)
Q Consensus       210 l~~~~~~~Gv~i~~~~~V~~i~~~~--~-----~v~v~~~~g~--~i~ad~-VV~aaG~~-s~~l~~~~g~~  270 (473)
                      +...+.+.+++|++++.|++|..++  +     +|.+.+.++.  +++|++ ||+|+|+. |++|+..+||.
T Consensus       237 ~~p~~~r~nl~i~t~a~V~rIl~~~~~~g~ra~GV~~~~~~g~~~~v~A~keVILaAGai~SP~LLl~SGIG  308 (391)
T d1gpea1         237 LLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIG  308 (391)
T ss_dssp             TTTTTTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTEE
T ss_pred             cCccccchhhhhhccceeeEEeeeCCCCCceEEeeEEecCCCeEEEEEeCCEEEEecchhcchHHHHhcCCC
Confidence            3334456789999999999996542  1     2333444553  577876 99999997 89999999876

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=99.12  E-value=5.7e-11  Score=111.99  Aligned_cols=63  Identities=13%  Similarity=0.198  Sum_probs=45.7

Q ss_pred             HHHHHHHHcCcEEEeCceEEEEEEcCCeEE-EEcCC-----Cc--EEEcC-EEEEcCCcC-hHHHHHhcCCCC
Q psy7710         209 VMGEEFCELGGEIRLNQQVESFKENPESVT-ISTKQ-----GD--HLESS-YALVCAGLQ-ADEMALKSGCSL  271 (473)
Q Consensus       209 ~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~-v~~~~-----g~--~i~ad-~VV~aaG~~-s~~l~~~~g~~~  271 (473)
                      .|...+.+.+++|++++.|++|..+++++. |+..+     +.  ++.|+ .||+|+|+. |++|+..+||..
T Consensus       196 yl~~a~~r~nl~i~t~~~V~rI~~d~~ra~GV~~~~~~~~~~~~~~v~a~~eVILsAGai~SP~LLl~SGIGp  268 (360)
T d1kdga1         196 YLQTALARPNFTFKTNVMVSNVVRNGSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGP  268 (360)
T ss_dssp             HHHHHHTCTTEEEECSCCEEEEEEETTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHHHTTBSC
T ss_pred             hhhhhhcccccccccCcEEEEEEEeCCEEEEEEEEecccCcceEEEEEECCEEEEechhHhChHHHHhcCCCc
Confidence            344444445689999999999998887654 65432     22  34554 499999987 899999999874

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.11  E-value=2.6e-10  Score=89.22  Aligned_cols=52  Identities=15%  Similarity=0.162  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEc--CCC--cEEEcCEEEEcCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTIST--KQG--DHLESSYALVCAG  257 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~--~~g--~~i~ad~VV~aaG  257 (473)
                      +.+.+.+.++++|++++++++|++++.+++++.|++  .+|  ++++||.|++|+|
T Consensus        69 ~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          69 LVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             HHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred             HHHHHHHHHHHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence            556688889999999999999999998887766554  333  4799999999998

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=3.6e-10  Score=93.97  Aligned_cols=39  Identities=26%  Similarity=0.367  Sum_probs=35.5

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGM   96 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~   96 (473)
                      ...+|+|||||++||++|+.|+++  |++|+|+|+.+.+|+
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~--G~~Vtl~E~~~~~GG   80 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAAR--GHQVTLFDAHSEIGG   80 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTT--TCEEEEEESSSSSCT
T ss_pred             CCcEEEEECccHHHHHHHHHHHhh--ccceEEEeccCccCc
Confidence            457899999999999999999999  999999999977663

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.06  E-value=1.1e-09  Score=85.49  Aligned_cols=50  Identities=18%  Similarity=0.249  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCA  256 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aa  256 (473)
                      +...+.+.++++|+++++++.|+++..++....+.+ +|.+++||.||+|.
T Consensus        74 ~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~v~~-dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          74 FTDVLTEEMEANNITIATGETVERYEGDGRVQKVVT-DKNAYDADLVVVAV  123 (123)
T ss_dssp             HHHHHHHHHHTTTEEEEESCCEEEEECSSBCCEEEE-SSCEEECSEEEECS
T ss_pred             hHHHHHHHhhcCCeEEEeCceEEEEEcCCCEEEEEe-CCCEEECCEEEEEC
Confidence            555677888899999999999999987654334544 55699999999983

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.05  E-value=6.4e-10  Score=101.43  Aligned_cols=59  Identities=19%  Similarity=0.237  Sum_probs=43.0

Q ss_pred             eHHHHHHHHHHHHHHcCcEEEeCceEEEEEE-cCCeEEEEc-CCC--cEEEcCEEEEcCCcCh
Q psy7710         202 DWGLVTRVMGEEFCELGGEIRLNQQVESFKE-NPESVTIST-KQG--DHLESSYALVCAGLQA  260 (473)
Q Consensus       202 ~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~-~~~~v~v~~-~~g--~~i~ad~VV~aaG~~s  260 (473)
                      ....+.+.|.+.+++.+..+..++.+..... +++.+.|+. .+|  .+++||+||.|.|.+|
T Consensus       101 ~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~i~a~~vVgADG~~S  163 (292)
T d1k0ia1         101 GQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHG  163 (292)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTTC
T ss_pred             cHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEecCCcEEEEEeCEEEECCCCCC
Confidence            3456778888888888888888877666554 445555543 344  3578999999999997

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.04  E-value=1.4e-09  Score=85.00  Aligned_cols=52  Identities=17%  Similarity=0.286  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCe-EE----EEcCCCcEEEcCEEEEcCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPES-VT----ISTKQGDHLESSYALVCAG  257 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~-v~----v~~~~g~~i~ad~VV~aaG  257 (473)
                      +.+.+.+.++++|++++++++|++++.++++ +.    ...+++++++||.||+|+|
T Consensus        65 ~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          65 TRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             HHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             hhhhhhhhhhccccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            4455777888999999999999999987643 21    2334556899999999998

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.04  E-value=1.2e-09  Score=84.58  Aligned_cols=51  Identities=10%  Similarity=0.209  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcC-CeEEEEcCCCcEEEcCEEEEcC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENP-ESVTISTKQGDHLESSYALVCA  256 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~-~~v~v~~~~g~~i~ad~VV~aa  256 (473)
                      +.+.+.+.++++|++++++++|++++..+ +.+.|++++|++++||.||+|.
T Consensus        66 ~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          66 LREELTKQLTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             HHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             HHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence            55668888999999999999999998654 5678999999899999999983

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.04  E-value=7.9e-10  Score=86.19  Aligned_cols=50  Identities=26%  Similarity=0.349  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCe--EEEEcCC-----CcEEEcCEEEEc
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPES--VTISTKQ-----GDHLESSYALVC  255 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~--v~v~~~~-----g~~i~ad~VV~a  255 (473)
                      +...+.+.++++|++|+++++|+++..++++  +.++..+     +++++||.|++|
T Consensus        66 i~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          66 VAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             HHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             hHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            5566888899999999999999999876543  3444322     247899999986

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.03  E-value=2.7e-09  Score=100.15  Aligned_cols=46  Identities=26%  Similarity=0.383  Sum_probs=35.9

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhc--CCCCeEEEEeccCcccCcccCCC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLN--YPKMKICLVEKEKELGMHQTGHN  102 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~--~~G~~V~viE~~~~~g~~~s~~~  102 (473)
                      .++||+|||+|++||++|++|++.  .+|++|+||||.+ ++++.|..+
T Consensus        20 ~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~-~~gg~s~~~   67 (356)
T d1jnra2          20 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA-VERSGAVAQ   67 (356)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC-TTTCSTTTT
T ss_pred             EecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCC-CCCChhHHH
Confidence            468999999999999999999752  1289999999984 554444433

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.02  E-value=7.9e-10  Score=86.35  Aligned_cols=51  Identities=18%  Similarity=0.335  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEE--EEcCC-C--cEEEcCEEEEcC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVT--ISTKQ-G--DHLESSYALVCA  256 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~--v~~~~-g--~~i~ad~VV~aa  256 (473)
                      +...+.+.+++.|++|++++.|.+++.+++++.  ++..+ |  ++++||.|++|+
T Consensus        68 ~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          68 IRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             HHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             chhhhhhhhhcccceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            555688889999999999999999998776654  44433 3  458999999986

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=2.5e-09  Score=83.75  Aligned_cols=52  Identities=21%  Similarity=0.211  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEE---cCCC------cEEEcCEEEEcCC
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTIS---TKQG------DHLESSYALVCAG  257 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~---~~~g------~~i~ad~VV~aaG  257 (473)
                      +.+.+.+.++++|++++++++|++|..+++++.+.   ...|      ..++||.||+|+|
T Consensus        65 ~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          65 ISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             HHHHHHHHHHHTTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            55667888899999999999999999888776533   2333      2468999999998

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=99.02  E-value=3.4e-10  Score=106.03  Aligned_cols=59  Identities=19%  Similarity=0.199  Sum_probs=43.0

Q ss_pred             HHHHHcCcEEEeCceEEEEEEcCC---e---EEEEcCCCc----EEEcC-EEEEcCCcC-hHHHHHhcCCC
Q psy7710         212 EEFCELGGEIRLNQQVESFKENPE---S---VTISTKQGD----HLESS-YALVCAGLQ-ADEMALKSGCS  270 (473)
Q Consensus       212 ~~~~~~Gv~i~~~~~V~~i~~~~~---~---v~v~~~~g~----~i~ad-~VV~aaG~~-s~~l~~~~g~~  270 (473)
                      ..+.+.+++|++++.|++|..++.   +   |.+...++.    .++|+ .||+|+|+. ++.|+..+||.
T Consensus       202 ~~a~~~nl~i~~~~~V~rv~~~~~~g~~a~gV~~~~~~g~~~~~~v~a~~eVILsAGaI~TP~LLl~SGIG  272 (351)
T d1ju2a1         202 NKGNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVG  272 (351)
T ss_dssp             GGSCTTTEEEEESCEEEEEEECCSSSCBEEEEEEECTTSCEEEEEEEEEEEEEECCHHHHHHHHHHHTTEE
T ss_pred             ccchhhhhhhhccchhhceeeeccccceeeEEEEEeCCCceEEEEeecCcEEEEeCccccCHHHHHHcCCC
Confidence            334567999999999999987642   2   334445542    25565 499999998 89999999875

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=99.01  E-value=9e-10  Score=104.01  Aligned_cols=33  Identities=21%  Similarity=0.267  Sum_probs=31.2

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .||||||+|.+|+.+|++|+++  |++|+|||++.
T Consensus         3 v~VIVVGsG~aG~v~A~rLaea--G~~VlvLEaG~   35 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEA--GVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHC--cCeEEEEecCC
Confidence            5899999999999999999999  99999999974

>d1c0pa2 d.16.1.3 (A:1194-1288) D-aminoacid oxidase {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: D-aminoacid oxidase-like
domain: D-aminoacid oxidase
species: Rhodotorula gracilis [TaxId: 5286]

Probab=99.01  E-value=1.1e-10  Score=86.87  Aligned_cols=87  Identities=16%  Similarity=0.192  Sum_probs=59.3

Q ss_pred             eeeeeEEEEeCcCcccCcccccccCCCCCCCccEEEEecCCCCeEEECCCccccccccCcccccchhHHHhhhccCCcch
Q psy7710         276 VPFRGEYLLLNPAKQHLVRGNIYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAFKKEGYRWRDFSVRELFSTLRYPGFW  355 (473)
Q Consensus       276 ~p~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (473)
                      .|+|||++.++.+...   ..+...    .+....|+.|+.+|.+++|+|.+..    +++.. .+++            
T Consensus         2 ~PvRGQ~~~v~~p~~~---~~~~~~----~~~~~~Yiipr~~g~vviG~T~e~~----~~d~~-~~~~------------   57 (95)
T d1c0pa2           2 EPIRGQTVLVKSPCKR---CTMDSS----DPASPAYIIPRPGGEVICGGTYGVG----DWDLS-VNPE------------   57 (95)
T ss_dssp             EEEEEEEEEEECCCCC---CEEECS----CTTCCEEEEEETTTEEEEECCCEET----CCCCS-CCHH------------
T ss_pred             CCcceEEEEEeCCCCc---ccEEEe----cCCCeEEEEECCCCEEEEEEEEEEC----CCcCC-CCHH------------
Confidence            5999999999765321   111111    1123479999999999999998753    22211 1111            


Q ss_pred             hccchhhhhchHHHHhhhcchhHHHHHhhcccCCC------CCCcccCCCeeceE
Q psy7710         356 RLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIE------AGDIQRGPSGVRAQ  404 (473)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~------~~~i~~~w~G~rp~  404 (473)
                               .         ++.+++++.+++|.|.      +.+|++.|+|+||.
T Consensus        58 ---------~---------~~~il~~a~~~~P~L~~~~~~~~~~v~~~~~GlRP~   94 (95)
T d1c0pa2          58 ---------T---------VQRILKHCLRLDPTISSDGTIEGIEVLRHNVGLRPA   94 (95)
T ss_dssp             ---------H---------HHHHHHHHHHHCGGGSSSSSGGGCEEEEEEEEEEEE
T ss_pred             ---------H---------HHHHHHHHHHhCccccccccccCccEEEeEEEeCCC
Confidence                     1         3566799999999984      67899999999995

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=99.01  E-value=1.8e-10  Score=109.15  Aligned_cols=35  Identities=23%  Similarity=0.306  Sum_probs=33.0

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .++||||||+|.+|+.+|++|+++  |++|+|||++.
T Consensus         6 ~~~dvIVVGsG~aG~v~A~rLaea--G~~VlvLEaG~   40 (370)
T d3coxa1           6 DRVPALVIGSGYGGAVAALRLTQA--GIPTQIVEMGR   40 (370)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence            679999999999999999999999  99999999973

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.99  E-value=1.1e-09  Score=85.35  Aligned_cols=48  Identities=17%  Similarity=0.315  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCc
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGL  258 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~  258 (473)
                      +.+.+.+.++++|+++++++.|+++..+  +  +.++ +..+++|.||+|+|.
T Consensus        74 ~~~~~~~~l~~~GV~~~~~~~v~~~~~~--~--v~~~-~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          74 LSNMIKDMLEETGVKFFLNSELLEANEE--G--VLTN-SGFIEGKVKICAIGI  121 (122)
T ss_dssp             HHHHHHHHHHHTTEEEECSCCEEEECSS--E--EEET-TEEEECSCEEEECCE
T ss_pred             HHHHHHHHHHHCCcEEEeCCEEEEEeCC--E--EEeC-CCEEECCEEEEEEEe
Confidence            4445777888899999999999888543  2  3344 448999999999995

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.96  E-value=1.1e-09  Score=95.51  Aligned_cols=40  Identities=33%  Similarity=0.380  Sum_probs=36.3

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMH   97 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~   97 (473)
                      .+|||+|||||++|+++|+.+++.  |.+|+|||+.+.+|+.
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~--G~kV~vie~~~~~GG~   41 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQL--GFKTTCIEKRGALGGT   41 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSSSCCS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC--CCcEEEEEecCCCCCe
Confidence            569999999999999999999999  9999999998666654

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=4.2e-09  Score=91.38  Aligned_cols=39  Identities=33%  Similarity=0.563  Sum_probs=35.2

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMH   97 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~   97 (473)
                      ++|||+|||||++|+++|.++++.  |++|+|||++ .+||.
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~--G~kV~iiE~~-~~GGt   39 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMY--GQKCALIEAK-ELGGT   39 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTT--TCCEEEEESS-CTTHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC--CCEEEEEecc-CcCCe
Confidence            469999999999999999999999  9999999997 56643

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.93  E-value=8.5e-09  Score=93.19  Aligned_cols=46  Identities=20%  Similarity=0.265  Sum_probs=38.8

Q ss_pred             HcCcEEEeCceEEEEEEcCCeEEEEcCCC----cEEEcCEEEEcCCcChH
Q psy7710         216 ELGGEIRLNQQVESFKENPESVTISTKQG----DHLESSYALVCAGLQAD  261 (473)
Q Consensus       216 ~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g----~~i~ad~VV~aaG~~s~  261 (473)
                      ..++.+.++++|+.+..+++++.|.+.++    +++++|.||.|.|.+|.
T Consensus       118 ~~~~~~~~~~~v~~~~~~~~~v~v~~~~g~~~~~~~~ad~vi~ADG~~S~  167 (288)
T d3c96a1         118 LGQQAVRTGLGVERIEERDGRVLIGARDGHGKPQALGADVLVGADGIHSA  167 (288)
T ss_dssp             HCTTSEEESEEEEEEEEETTEEEEEEEETTSCEEEEEESEEEECCCTTCH
T ss_pred             ccCeeeecCcEEEEeeecCCcEEEEEEcCCCCeEEEeeceeeccCCccce
Confidence            45889999999999999888888776544    47899999999999984

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=2.9e-09  Score=90.38  Aligned_cols=56  Identities=14%  Similarity=0.236  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         203 WGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       203 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      +..+...+.+++.+.++++... .|+.+...++.+.+++..+ .+.++.||+++|...
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~~~~~~~v~~~~~-~~~~~~viva~G~~~  116 (190)
T d1trba1          61 GPLLMERMHEHATKFETEIIFD-HINKVDLQNRPFRLNGDNG-EYTCDALIIATGASA  116 (190)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECC-CEEEEECSSSSEEEEESSC-EEEEEEEEECCCEEE
T ss_pred             hHHHHHHHHHHHHhcCcEEecc-eeEEEecCCCcEEEEEeee-eEeeeeeeeecceee
Confidence            3456666777888889988754 6888888888788888776 899999999999753

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.90  E-value=3.7e-09  Score=89.80  Aligned_cols=57  Identities=11%  Similarity=0.057  Sum_probs=46.6

Q ss_pred             eeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcC
Q psy7710         201 VDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQ  259 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~  259 (473)
                      ..+..+...+.+++++.|+++..+ .|.++...++.+.+.+..+ .+.+|.+++++|..
T Consensus        64 ~~~~el~~~~~~q~~~~g~~i~~~-~V~~~~~~~~~~~v~~~~~-~~~~~~~~~a~g~~  120 (192)
T d1vdca1          64 ILGVELTDKFRKQSERFGTTIFTE-TVTKVDFSSKPFKLFTDSK-AILADAVILAIGAV  120 (192)
T ss_dssp             EEHHHHHHHHHHHHHHTTCEEECC-CCCEEECSSSSEEEECSSE-EEEEEEEEECCCEE
T ss_pred             ccchHHHHHHHHHHHhhcceeeee-eEEecccccCcEEecccce-eeeeeeEEEEeeee
Confidence            345667788888899999999755 6888888777788888776 88999999999975

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.90  E-value=1.1e-08  Score=79.46  Aligned_cols=32  Identities=19%  Similarity=0.212  Sum_probs=30.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ..++|||||++|+.+|..|++.  |.+|+|+++.
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~l--G~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGI--GLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhc--CCeEEEEEec
Confidence            4699999999999999999999  9999999975

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.89  E-value=8e-09  Score=93.25  Aligned_cols=42  Identities=31%  Similarity=0.438  Sum_probs=36.9

Q ss_pred             CcccEEEEcCChHHHHHHHHHHh-cCCCCeEEEEeccCcccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKL-NYPKMKICLVEKEKELGMHQT   99 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~-~~~G~~V~viE~~~~~g~~~s   99 (473)
                      .++||+|||||++||++|++|++ .  |++|+|||+++.+|+.+.
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~--G~~V~vlE~~~~~GG~~~   74 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNP--NVQVAIIEQSVSPGGGAW   74 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTST--TSCEEEEESSSSCCTTTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcc--CCeEEEEecCCCCCCcee
Confidence            46899999999999999999986 5  899999999977876543

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.84  E-value=1.4e-08  Score=90.56  Aligned_cols=36  Identities=47%  Similarity=0.773  Sum_probs=33.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGM   96 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~   96 (473)
                      ||++|||||++|+++|.++++.  |++|+|+|++ .+||
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~--G~~V~liE~~-~~GG   37 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARH--NAKVALVEKS-RLGG   37 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT--TCCEEEEESS-STTH
T ss_pred             ceEEEECCCHHHHHHHHHHHHC--CCeEEEEecC-CCCC
Confidence            8999999999999999999999  9999999997 5654

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.77  E-value=3.7e-08  Score=86.32  Aligned_cols=35  Identities=26%  Similarity=0.478  Sum_probs=32.9

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKE   93 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~   93 (473)
                      +|||+|||||++|+++|.++++.  |++|+|||+.+.
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~--G~kV~viE~~~~   37 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKF--DKKVMVLDFVTP   37 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGG--CCCEEEECCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCC
Confidence            69999999999999999999999  999999999843

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.69  E-value=2.7e-08  Score=84.79  Aligned_cols=49  Identities=14%  Similarity=0.217  Sum_probs=39.8

Q ss_pred             HHHHHcCcEEEeCceEEEEEEcCCeEEEEc-CCC--cEEEcCEEEEcCCcCh
Q psy7710         212 EEFCELGGEIRLNQQVESFKENPESVTIST-KQG--DHLESSYALVCAGLQA  260 (473)
Q Consensus       212 ~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~-~~g--~~i~ad~VV~aaG~~s  260 (473)
                      +.++++|++++++++|++|+.+++.+.++. .+|  .++.+|.+|+|+|...
T Consensus        64 ~~l~~~gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~  115 (198)
T d1nhpa1          64 EKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVP  115 (198)
T ss_dssp             HHHHHTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred             HHHHHCCcEEEEeeceeeEeeccccceeeecccccccccccceeeEeeccee
Confidence            456678999999999999998888887663 444  3578999999999764

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=2.5e-09  Score=92.44  Aligned_cols=56  Identities=14%  Similarity=0.204  Sum_probs=44.0

Q ss_pred             HHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh--HHHHHhcCCC
Q psy7710         213 EFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA--DEMALKSGCS  270 (473)
Q Consensus       213 ~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s--~~l~~~~g~~  270 (473)
                      .+++.|++++++++|++|+.+++.  |++++|.++.+|.||+|+|+..  ..+....|++
T Consensus        92 ~~~~~gI~~~~g~~V~~id~~~~~--V~l~dG~~i~~d~lViAtG~~~~~~~l~~~~gl~  149 (213)
T d1m6ia1          92 HIENGGVAVLTGKKVVQLDVRDNM--VKLNDGSQITYEKCLIATGGTEPNVELAKTGGLE  149 (213)
T ss_dssp             TSTTCEEEEEETCCEEEEEGGGTE--EEETTSCEEEEEEEEECCCEEEECCTTHHHHTCC
T ss_pred             HHHHCCeEEEeCCEEEEeeccCce--eeeccceeeccceEEEeeeeecchhhhhhccchh
Confidence            456789999999999999766654  6678888999999999999653  3556666654

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.67  E-value=9.7e-08  Score=82.74  Aligned_cols=39  Identities=31%  Similarity=0.308  Sum_probs=35.1

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMH   97 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~   97 (473)
                      .++||+|||||++|+++|.++++.  |++|+|||++ .+|+.
T Consensus         2 ~~~DviVIG~GpaGl~aA~~aar~--G~kV~vIEk~-~~GG~   40 (223)
T d1ebda1           2 IETETLVVGAGPGGYVAAIRAAQL--GQKVTIVEKG-NLGGV   40 (223)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHT--TCCEEEEESS-CTTHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHC--CCEEEEEecC-CCCcc
Confidence            368999999999999999999999  9999999998 56643

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=6e-09  Score=95.00  Aligned_cols=42  Identities=33%  Similarity=0.607  Sum_probs=38.8

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG  100 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~  100 (473)
                      ++||+|||||++||++|++|+++  |.+|+|+|+.+.+||.+..
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~--g~~V~iiEk~~~iGG~~~t   42 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKL--NKKVLVIEKRNHIGGNAYT   42 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGG--TCCEEEECSSSSSSGGGCE
T ss_pred             CccEEEECCcHHHHHHHHHHHhC--CCcEEEEECCCCcccceEE
Confidence            47999999999999999999999  9999999999999988644

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=7.8e-09  Score=97.03  Aligned_cols=43  Identities=28%  Similarity=0.495  Sum_probs=39.6

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCcccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQTG  100 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s~  100 (473)
                      ++.+|+|||||++||+||++|+++  |++|+|+|+++++||++..
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~--G~~V~VlEa~~r~GGr~~t   46 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSF--GMDVTLLEARDRVGGRVAT   46 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHT--TCEEEEECSSSSSBTTCCE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhC--CCCEEEEeCCCCCcccEEE
Confidence            567899999999999999999999  9999999999999987654

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.61  E-value=1.4e-07  Score=81.67  Aligned_cols=39  Identities=26%  Similarity=0.327  Sum_probs=35.4

Q ss_pred             CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccC
Q psy7710          55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGM   96 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~   96 (473)
                      ..++|++|||||++|+++|..+++.  |.+|+|||++ .+||
T Consensus         3 ~~~~DlvVIG~GpaGl~aA~~aa~~--G~~V~liE~~-~~GG   41 (220)
T d1lvla1           3 TIQTTLLIIGGGPGGYVAAIRAGQL--GIPTVLVEGQ-ALGG   41 (220)
T ss_dssp             CEECSEEEECCSHHHHHHHHHHHHH--TCCEEEECSS-CTTH
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHC--CCcEEEEecC-CCCC
Confidence            3579999999999999999999999  9999999998 5664

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.58  E-value=1.5e-08  Score=91.34  Aligned_cols=43  Identities=28%  Similarity=0.459  Sum_probs=38.1

Q ss_pred             HcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCc
Q psy7710         216 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGL  258 (473)
Q Consensus       216 ~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~  258 (473)
                      ..+..+..++.|..+...+..+.|++.+|+.+++|+++.+...
T Consensus       222 ~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~~~~~~~~  264 (347)
T d1b5qa1         222 IVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASL  264 (347)
T ss_dssp             BCCTTEESSCCEEEEEECSSCEEEEETTSCEEEESEEEECSCH
T ss_pred             hcccccccccccccccccCccEEEEECCCCEEEcCEEEeecCH
Confidence            4567899999999999999999999999989999999998854

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=2e-07  Score=78.15  Aligned_cols=33  Identities=30%  Similarity=0.457  Sum_probs=31.2

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .|||+|||||++|+++|.++++.  |++|+|||++
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar~--G~~v~iie~~   33 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSARK--GIRTGLMGER   33 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTT--TCCEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHc--CCeEEEEEEe
Confidence            38999999999999999999999  9999999985

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.54  E-value=7.3e-08  Score=79.50  Aligned_cols=56  Identities=18%  Similarity=0.263  Sum_probs=42.3

Q ss_pred             HHHHcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcChHHHHHhcCCCC
Q psy7710         213 EFCELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQADEMALKSGCSL  271 (473)
Q Consensus       213 ~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s~~l~~~~g~~~  271 (473)
                      ..++.++++++++.|+.+.....  .+.. ++.++.+|.+|+|+|.....+.+..|++.
T Consensus        61 ~~~~~~v~~~~~~~v~~i~~~~~--~~~~-~~~~i~~D~li~a~G~~~~~~~~~~gl~~  116 (167)
T d1xhca1          61 WYRKRGIEIRLAEEAKLIDRGRK--VVIT-EKGEVPYDTLVLATGAPNVDLARRSGIHT  116 (167)
T ss_dssp             HHHHHTEEEECSCCEEEEETTTT--EEEE-SSCEEECSEEEECCCEECCHHHHHTTCCB
T ss_pred             HHHhccceeeeeccccccccccc--cccc-cccccccceeEEEEEecCCchhhhcCcee
Confidence            44567999999999998865433  2333 34489999999999988777888888764

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.53  E-value=2.8e-08  Score=93.50  Aligned_cols=39  Identities=41%  Similarity=0.742  Sum_probs=35.4

Q ss_pred             CcccEEEEcCChHHHHHHHHHHh------cCCCCeEEEEeccCcccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKL------NYPKMKICLVEKEKELGM   96 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~------~~~G~~V~viE~~~~~g~   96 (473)
                      .++||+|||||++|+++|+.|++      +  |++|+||||+..+|.
T Consensus        31 ~e~DViIVGgGPAGlsaA~~LA~l~~~~~~--Gl~VlllEK~~~pG~   75 (380)
T d2gmha1          31 EEADVVIVGAGPAGLSAATRLKQLAAQHEK--DLRVCLVEKAAHIGA   75 (380)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHTTC--CCCEEEECSSSSTTT
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhhhhhhcC--CCEEEEEcCCCCCCC
Confidence            46999999999999999999997      6  999999999977764

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.52  E-value=6.1e-07  Score=78.20  Aligned_cols=39  Identities=18%  Similarity=0.357  Sum_probs=32.2

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcC-CCCeEEEEeccCcccCc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNY-PKMKICLVEKEKELGMH   97 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~-~G~~V~viE~~~~~g~~   97 (473)
                      .+|+|||||++|+++|.++++.+ .+++|+|+|++ .+||.
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~-~~GG~   41 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCD-GIGGA   41 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS-CTTHH
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecC-CCCce
Confidence            57999999999999999988762 14789999997 67643

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.49  E-value=2.3e-08  Score=87.49  Aligned_cols=41  Identities=32%  Similarity=0.390  Sum_probs=36.7

Q ss_pred             CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCc
Q psy7710          55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMH   97 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~   97 (473)
                      .++|||+|||||++|+++|.+|++.  |.+|+|||+.+.+|+.
T Consensus         3 ~~~yDviVIG~GpAGl~aA~~aa~~--G~kV~lie~~~~~GG~   43 (233)
T d1v59a1           3 NKSHDVVIIGGGPAGYVAAIKAAQL--GFNTACVEKRGKLGGT   43 (233)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSSSHH
T ss_pred             CcccCEEEECCCHHHHHHHHHHHHC--CCcEEEEEecCCcceE
Confidence            3689999999999999999999999  9999999997666643

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.47  E-value=5.4e-08  Score=89.12  Aligned_cols=41  Identities=17%  Similarity=0.438  Sum_probs=37.6

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCccc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQT   99 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s   99 (473)
                      +.+|+|||||++||++|+.|+++  |.+|+|+|+++.+||.+.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~--G~~V~viEk~~~iGG~~~   42 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEK--GHQVHIIDQRDHIGGNSY   42 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT--TCEEEEEESSSSSSGGGC
T ss_pred             CCEEEEECCcHHHHHHHHHHHhC--CCCEEEEECCCCCcCeee
Confidence            35799999999999999999999  999999999999998763

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.45  E-value=5.6e-08  Score=89.27  Aligned_cols=40  Identities=30%  Similarity=0.521  Sum_probs=36.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCccc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQT   99 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s   99 (473)
                      .+|+|||||++||+||++|+++  |++|+|+|+++.+||.+.
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~--G~~V~vlE~~~~~GG~~~   41 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIH--GLNVTVFEAEGKAGGKLR   41 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT--SCEEEEECSSSSSCSSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhC--CCCEEEEeCCCCCcCceE
Confidence            3599999999999999999999  999999999989988654

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.43  E-value=8.9e-08  Score=83.26  Aligned_cols=35  Identities=34%  Similarity=0.456  Sum_probs=33.3

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ++|||+|||||++|+++|.+|++.  |++|+|||+..
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~--G~~V~viE~~~   36 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQL--GLKTALIEKYK   36 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHH--TCCEEEEECCB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC--CCeEEEEeccc
Confidence            679999999999999999999999  99999999974

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.40  E-value=7.3e-08  Score=84.07  Aligned_cols=39  Identities=44%  Similarity=0.583  Sum_probs=35.5

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGM   96 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~   96 (473)
                      .+|||+|||||++|+++|.+|++.  |++|+|||+.+.+|+
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~~--G~~V~viE~~~~~GG   43 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAADE--GLKVAIVERYKTLGG   43 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSCSSH
T ss_pred             CccCEEEECcCHHHHHHHHHHHHC--CCeEEEEeccCCCCC
Confidence            579999999999999999999999  999999999865654

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.31  E-value=2.6e-07  Score=86.73  Aligned_cols=39  Identities=33%  Similarity=0.454  Sum_probs=35.2

Q ss_pred             CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      +.+|||||||+|++|+++|.+|+++  |+||+|||++....
T Consensus         2 d~~yDviIVGsG~aG~v~A~~La~~--G~kVlvLEaG~~~~   40 (379)
T d2f5va1           2 DIKYDVVIVGSGPIGCTYARELVGA--GYKVAMFDIGEIDS   40 (379)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCCS
T ss_pred             CCcccEEEECcCHHHHHHHHHHhhC--CCeEEEEecCCCCC
Confidence            4689999999999999999999999  99999999985443

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.26  E-value=3.6e-07  Score=79.56  Aligned_cols=39  Identities=26%  Similarity=0.232  Sum_probs=34.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGM   96 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~   96 (473)
                      ++|+|||||++||+||.+|++++.|.+|+|+|+.+.+|+
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG   40 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFG   40 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCT
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCc
Confidence            479999999999999999988765789999999977663

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.26  E-value=2.5e-07  Score=81.00  Aligned_cols=40  Identities=20%  Similarity=0.136  Sum_probs=34.0

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcC-----CCCeEEEEeccCcccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNY-----PKMKICLVEKEKELGM   96 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~-----~G~~V~viE~~~~~g~   96 (473)
                      .++|+|||||++||+||++|++++     .+.+|+|+|+.+.+||
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG   46 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWG   46 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCST
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCC
Confidence            368999999999999999999982     1268999999987764

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.4e-07  Score=80.11  Aligned_cols=37  Identities=38%  Similarity=0.567  Sum_probs=34.0

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGM   96 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~   96 (473)
                      +|||+|||||++|+++|.++++.  |++|+|||++ .+|+
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~--G~kV~vIEk~-~~GG   39 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAEL--GARAAVVESH-KLGG   39 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT--TCCEEEEESS-CTTH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHC--CCEEEEEecc-CCCC
Confidence            69999999999999999999999  9999999997 5553

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.21  E-value=5e-07  Score=82.53  Aligned_cols=44  Identities=32%  Similarity=0.568  Sum_probs=38.3

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQT   99 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s   99 (473)
                      .++||+|||||++|+++|++|+++.+|.+|+|+|+++.+|+...
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW   92 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeE
Confidence            46899999999999999999997655899999999987876543

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.20  E-value=5.8e-07  Score=75.94  Aligned_cols=37  Identities=22%  Similarity=0.326  Sum_probs=33.1

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEeccCccc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKEKELG   95 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~~~~g   95 (473)
                      ..+|+|||||++||++|++|+++  |+ +|+|+||.+.++
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~--G~~~V~v~E~~~~~g   41 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARL--GYSDITIFEKQEYVG   41 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHT--TCCCEEEEESSSSCS
T ss_pred             CCEEEEECChHHHHHHHHHHHHC--CCCeEEEEEecCccc
Confidence            45799999999999999999999  88 599999997655

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.15  E-value=1.1e-06  Score=76.49  Aligned_cols=39  Identities=26%  Similarity=0.385  Sum_probs=35.6

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGM   96 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~   96 (473)
                      ...+|+|||||++|+++|..|+++  |.+|+|+|+.+.+|+
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~--G~~v~l~E~~~~~GG   86 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMES--GYTVHLTDTAEKIGG   86 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSSTTT
T ss_pred             CCceEEEEcccHHHHHHHHHHHHh--ccceeeEeeccccCC
Confidence            567999999999999999999999  999999999877763

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.15  E-value=4.9e-07  Score=75.63  Aligned_cols=53  Identities=19%  Similarity=0.276  Sum_probs=40.0

Q ss_pred             HcCcEEEeCceEEEEEEcCCeEEEEcCCCcEEEcCEEEEcCCcCh------HHHHHhcCCC
Q psy7710         216 ELGGEIRLNQQVESFKENPESVTISTKQGDHLESSYALVCAGLQA------DEMALKSGCS  270 (473)
Q Consensus       216 ~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~ad~VV~aaG~~s------~~l~~~~g~~  270 (473)
                      ..+++++++++|+++..+...  +.+.+|+++.+|.||+|+|...      ..+....|+.
T Consensus        67 ~~~i~~~~~~~v~~i~~~~~~--~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~  125 (183)
T d1d7ya1          67 APEVEWLLGVTAQSFDPQAHT--VALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLA  125 (183)
T ss_dssp             STTCEEEETCCEEEEETTTTE--EEETTSCEEECSEEEECCCEEECCEEECCHHHHHTTCC
T ss_pred             cCCeEEEEeccccccccccce--eEecCCcEeeeeeEEEEEEEEcccccccccccceeeEe
Confidence            458999999999998766543  5567888999999999999652      2455555554

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.08  E-value=1.4e-06  Score=77.22  Aligned_cols=41  Identities=27%  Similarity=0.399  Sum_probs=37.2

Q ss_pred             CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCc
Q psy7710          55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMH   97 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~   97 (473)
                      +++||++|||||++|+.+|..+++.  |.+|+++|+.+.+|+.
T Consensus        40 ~k~yDvvVIGgG~aG~~aA~~~a~~--G~kv~vve~~~~lGG~   80 (261)
T d1mo9a1          40 PREYDAIFIGGGAAGRFGSAYLRAM--GGRQLIVDRWPFLGGS   80 (261)
T ss_dssp             CSCBSEEEECCSHHHHHHHHHHHHT--TCCEEEEESSSSSSCH
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCccccc
Confidence            4789999999999999999999999  9999999998777654

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.05  E-value=8.3e-06  Score=65.85  Aligned_cols=33  Identities=15%  Similarity=0.172  Sum_probs=29.1

Q ss_pred             ccEEEE--cCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVV--GGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvII--GaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ..++|+  |||..|+.+|..|+++  |.+|+|+++.+
T Consensus        40 ~~vvi~d~ggg~ig~e~A~~la~~--G~~Vtlv~~~~   74 (156)
T d1djqa2          40 KRVVILNADTYFMAPSLAEKLATA--GHEVTIVSGVH   74 (156)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHT--TCEEEEEESSC
T ss_pred             CceEEEecCCChHHHHHHHHHHHc--CCeEEEEecCC
Confidence            345665  9999999999999999  99999999974

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.04  E-value=1.5e-06  Score=80.63  Aligned_cols=38  Identities=29%  Similarity=0.495  Sum_probs=33.2

Q ss_pred             CcccEEEEcCChHHHHHHHHHHh-----cCCCCeEEEEeccCccc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKL-----NYPKMKICLVEKEKELG   95 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~-----~~~G~~V~viE~~~~~g   95 (473)
                      ..|||+|||||++|+++|..|++     +  |++|+||||.+.+.
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~--G~~v~vlEr~~~~~   48 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKP--DLKVRIIDKRSTKV   48 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHST--TCCEEEECSSSSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccC--CCcEEEEcCCCCCC
Confidence            46999999999999999999974     5  89999999986543

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.93  E-value=3.9e-06  Score=73.23  Aligned_cols=35  Identities=23%  Similarity=0.468  Sum_probs=31.7

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEeccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKEK   92 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~~   92 (473)
                      ++|||+|||+|++|+++|.++++.  |. +|+|+|+..
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~--g~k~V~vie~~~   37 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASL--HKKRVAVIDLQK   37 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHH--HCCCEEEEESCS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHc--CCCEEEEEEEec
Confidence            679999999999999999999998  64 699999874

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.93  E-value=5.5e-06  Score=72.01  Aligned_cols=34  Identities=21%  Similarity=0.469  Sum_probs=30.8

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCC-CeEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPK-MKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G-~~V~viE~~   91 (473)
                      +.|||+|||||++|+++|.++++.  | .+|+|+|+.
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~--g~k~V~iie~~   36 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATL--YKKRVAVIDVQ   36 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHT--SCCCEEEEESC
T ss_pred             CccCEEEECCCHHHHHHHHHHHHc--CCCEEEEEEee
Confidence            679999999999999999999998  5 468999986

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=8.5e-05  Score=60.03  Aligned_cols=46  Identities=11%  Similarity=0.223  Sum_probs=34.7

Q ss_pred             HHHHHHHcCcEEEeCceEEEEEEcCCeEEEEcCCC-cEEEcCEEEEcCC
Q psy7710         210 MGEEFCELGGEIRLNQQVESFKENPESVTISTKQG-DHLESSYALVCAG  257 (473)
Q Consensus       210 l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g-~~i~ad~VV~aaG  257 (473)
                      +...++..|+++++++.|.++.  ++++.+...+. ..+.||.||+|+|
T Consensus       114 ~~~~~~~~gv~~~~~~~v~~i~--~~gv~~~~~g~e~~i~aD~Vv~A~G  160 (162)
T d1ps9a2         114 HRTTLLSRGVKMIPGVSYQKID--DDGLHVVINGETQVLAVDNVVICAG  160 (162)
T ss_dssp             HHHHHHHTTCEEECSCEEEEEE--TTEEEEEETTEEEEECCSEEEECCC
T ss_pred             HHHHHhhCCeEEEeeeEEEEEc--CCCCEEecCCeEEEEECCEEEECCC
Confidence            5666788999999999999886  34444443322 4689999999998

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=0.00099  Score=50.85  Aligned_cols=35  Identities=26%  Similarity=0.326  Sum_probs=31.6

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      +..+|+|||+|-+.+-.|..|++.  ..+|+++-|++
T Consensus        26 ~~k~V~VvGgGdsA~e~A~~L~~~--a~~V~li~r~~   60 (126)
T d1trba2          26 RNQKVAVIGGGNTAVEEALYLSNI--ASEVHLIHRRD   60 (126)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTT--SSEEEEECSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhc--CCcEEEEeecc
Confidence            346899999999999999999998  88999998874

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.46  E-value=4.9e-05  Score=62.63  Aligned_cols=35  Identities=40%  Similarity=0.714  Sum_probs=31.5

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEKE   93 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~   93 (473)
                      +|+|||||.+|+.+|..|++.++..+|+|+|+.+.
T Consensus         4 rivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             cEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            69999999999999999999866679999999853

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.36  E-value=0.0014  Score=51.82  Aligned_cols=34  Identities=21%  Similarity=0.193  Sum_probs=28.9

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~~   92 (473)
                      .-+|+|||||-+|+-+|..|.+.  |. +|+++.+.+
T Consensus        45 ~~kVvVIGGGdtA~D~A~~a~r~--GA~~V~vi~rr~   79 (153)
T d1gtea3          45 RGAVIVLGAGDTAFDCATSALRC--GARRVFLVFRKG   79 (153)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHT--TCSEEEEECSSC
T ss_pred             CCEEEEECCChhHHHHHHHHHHc--CCcceeEEEeCC
Confidence            34799999999999999999998  64 588998863

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=0.0012  Score=50.38  Aligned_cols=35  Identities=31%  Similarity=0.321  Sum_probs=31.4

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ...+|+|||+|-+.+-.|..|++.  ..+|+++-|++
T Consensus        29 ~gk~V~VvGgG~sA~~~A~~L~~~--a~~V~li~r~~   63 (126)
T d1fl2a2          29 KGKRVAVIGGGNSGVEAAIDLAGI--VEHVTLLEFAP   63 (126)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHTT--BSEEEEECSSS
T ss_pred             CCceEEEEeCCHHHHHHHHhhhcc--CCceEEEeccc
Confidence            346899999999999999999998  78999998874

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.79  E-value=0.00051  Score=56.13  Aligned_cols=33  Identities=21%  Similarity=0.293  Sum_probs=30.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ..|+|||+|.+|..+|.+|+++  |.+|+|+||..
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~--g~~V~v~dr~~   35 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDS--GIKVTVACRTL   35 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTT--TCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCEEEEEECCh
Confidence            4699999999999999999999  89999999974

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.78  E-value=0.00042  Score=56.92  Aligned_cols=34  Identities=26%  Similarity=0.279  Sum_probs=29.7

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .-+|+|||||.+|+.+|..|++.  |.+|+|++..+
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~--g~~v~v~~~~~   36 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRAS--GWEGNIRLVGD   36 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHT--TCCSEEEEECS
T ss_pred             CCCEEEECCcHHHHHHHHHHHHc--CCceEEEEecC
Confidence            35799999999999999999999  78888877764

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.75  E-value=0.00013  Score=62.89  Aligned_cols=36  Identities=17%  Similarity=0.251  Sum_probs=32.2

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCccc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELG   95 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g   95 (473)
                      ..|+|||||.+|+-+|..|++.  |.+|+++++.+.+.
T Consensus       181 ~~vvViGgG~~g~e~A~~l~~~--g~~Vtli~r~~~~~  216 (233)
T d1djqa3         181 APRLIADATFTGHRVAREIEEA--NPQIAIPYKRETIA  216 (233)
T ss_dssp             SCCCHHHHHHHHHHHHHTTTSS--CTTSCCCCCCCCCC
T ss_pred             CceeEecCchHHHHHHHHHHhc--CCceEEEEeccccc
Confidence            4689999999999999999999  89999999986554

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.0014  Score=47.04  Aligned_cols=35  Identities=14%  Similarity=0.241  Sum_probs=31.4

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKE   93 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~   93 (473)
                      ...|+|+|.|.+|+++|..|.++  |.+|++.|....
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~--g~~v~~~D~~~~   39 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLAR--GVTPRVMDTRMT   39 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHT--TCCCEEEESSSS
T ss_pred             CCEEEEEeECHHHHHHHHHHHHC--CCEEEEeeCCcC
Confidence            34699999999999999999999  999999998643

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.37  E-value=0.0015  Score=53.42  Aligned_cols=32  Identities=25%  Similarity=0.171  Sum_probs=30.2

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ..|+|||+|..|+.+|..|+++  |.+|.++++.
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~--G~~V~~~~r~   33 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDID   33 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSC
T ss_pred             CEEEEECccHHHHHHHHHHHHC--CCEEEEEECC
Confidence            4699999999999999999999  9999999997

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.37  E-value=0.0016  Score=52.25  Aligned_cols=33  Identities=15%  Similarity=0.098  Sum_probs=30.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ++|+|||+|..|...|..|++.  |.+|++++|.+
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~--G~~V~~~~r~~   33 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQ--GHEVQGWLRVP   33 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHHC--CCceEEEEcCH
Confidence            3699999999999999999999  99999999974

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.34  E-value=0.029  Score=42.48  Aligned_cols=35  Identities=20%  Similarity=0.303  Sum_probs=31.7

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      +..+|+|||+|-+.+-.|..|++.  -.+|+++-|.+
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~~~--a~~V~li~r~~   67 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLTKY--GSKVYIIHRRD   67 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTT--SSEEEEECSSS
T ss_pred             CCCEEEEEcCchHHHHHHHHHhCC--CCcEEEEEecc
Confidence            456899999999999999999998  78999998874

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.29  E-value=0.0051  Score=49.35  Aligned_cols=34  Identities=18%  Similarity=0.194  Sum_probs=31.2

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ..+|+|||+|++|+.+|..+...  |.+|+++|.+.
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~l--GA~V~v~D~~~   62 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRL--GAVVMATDVRA   62 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCS
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHc--CCEEEEEeccH
Confidence            46899999999999999999999  99999999873

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.11  E-value=0.0032  Score=49.83  Aligned_cols=34  Identities=24%  Similarity=0.360  Sum_probs=31.6

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ...+|+|||+|++|+.++..+...  |.+|+++|.+
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~l--GA~V~~~D~~   64 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGL--GAQVQIFDIN   64 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhC--CCEEEEEeCc
Confidence            457899999999999999999999  9999999987

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0027  Score=52.34  Aligned_cols=33  Identities=27%  Similarity=0.528  Sum_probs=30.6

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ..|.|||+|..|...|+.++.+  |++|+++|+.+
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~--G~~V~l~D~~~   37 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAAT--GHTVVLVDQTE   37 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCH
T ss_pred             EEEEEECcCHHHHHHHHHHHhC--CCcEEEEECCh
Confidence            4699999999999999999999  99999999873

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.05  E-value=0.0031  Score=48.39  Aligned_cols=32  Identities=28%  Similarity=0.461  Sum_probs=30.2

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .|+|+|+|-.|..+|..|.+.  |.+|+++|+++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~--g~~v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEK--GHDIVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHC--CCCcceecCCh
Confidence            599999999999999999999  99999999974

>d1pj5a3 d.16.1.5 (A:220-338) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=95.93  E-value=0.0044  Score=46.38  Aligned_cols=113  Identities=11%  Similarity=0.136  Sum_probs=58.8

Q ss_pred             eeeeeeEEEEeCcCcccCcccc---cccCCCCCCCccEEEEecCCCCeEEECCCccccc--cccCcccccchhHHHhhhc
Q psy7710         275 IVPFRGEYLLLNPAKQHLVRGN---IYPVPDPNFPFLGVHFTPRMDGSVWLGPNAVLAF--KKEGYRWRDFSVRELFSTL  349 (473)
Q Consensus       275 ~~p~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~g~~~iG~~~~~~~--~~~~~~~~~~~~~~~~~~~  349 (473)
                      +.|++.|++++++.+.......   -...|-.+.+...+|+|+. .|.+.+|+......  +.++..  ...+.+.....
T Consensus         1 lvPveHqY~vTepip~l~~~~~~~~~~~~P~vRD~d~~~Y~R~e-~~gll~G~yE~~~~~~~~~~~~--~~~~~~~~~~~   77 (119)
T d1pj5a3           1 LLPLAHQYVKTTPVPAQQGRNDQPNGARLPILRHQDQDLYYREH-GDRYGIGSYAHRPMPVDVDTLG--AYAPETVSEHH   77 (119)
T ss_dssp             CEEEEEEEEEESCCGGGTTTSCTTTCCCSCEEEEGGGTEEEEEE-TTEEEEEECCSCCCBCCGGGSC--CCCGGGCBTTB
T ss_pred             CccccceEEeecCchHhhhcccccCCCCCCEEEeCCCCEEEEEe-CCeEEEeecCCCCccccccccc--ccCccCCCccc
Confidence            4799999999988653211100   0012222222346899987 56688998743210  000000  00000000000


Q ss_pred             cCCcchhccchhhhhchHHHHhhhcchhHHHHHhhcccCCCCCCcccCCCeeceE
Q psy7710         350 RYPGFWRLGLKYTRYGSKEMIMSWFPSMRVNELKQYIEEIEAGDIQRGPSGVRAQ  404 (473)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~i~~~w~G~rp~  404 (473)
                      .     .   ..+....+.      .+..++.+.+++|.|.++.|.+.+.|..++
T Consensus        78 ~-----~---~~~~~d~d~------~~~~~e~a~~r~P~l~~~gi~~~~NGp~sf  118 (119)
T d1pj5a3          78 M-----P---SRLDFTLED------FLPAWEATKQLLPALADSEIEDGFNGIFSF  118 (119)
T ss_dssp             S-----T---TEECCCHHH------HHHHHHHHHHHCGGGGGSCEEEEEEEEEEE
T ss_pred             c-----h---hhCCCcHHH------HHHHHHHHHHhcCCcccccccceeecCccc
Confidence            0     0   001111111      245679999999999999999999997654

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=95.86  E-value=0.005  Score=48.01  Aligned_cols=37  Identities=27%  Similarity=0.327  Sum_probs=31.6

Q ss_pred             CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      +.+.+|.|||+|-.|.++|+.|+.++-..+++++|..
T Consensus         3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~   39 (146)
T d1ez4a1           3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (146)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecc
Confidence            3567899999999999999999998322589999976

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=95.81  E-value=0.0031  Score=58.42  Aligned_cols=38  Identities=34%  Similarity=0.651  Sum_probs=32.9

Q ss_pred             CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccc
Q psy7710           7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE   45 (473)
Q Consensus         7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~   45 (473)
                      .++|||+|||+|++|++.|.+|+ ..++.+++++|+.+.
T Consensus        22 ~~tyD~IIVGsG~aG~vlA~rLa-e~~~~~VLlLEaG~~   59 (391)
T d1gpea1          22 GKTYDYIIAGGGLTGLTVAAKLT-ENPKIKVLVIEKGFY   59 (391)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHH-TSTTCCEEEEESSCC
T ss_pred             CCeeeEEEECcCHHHHHHHHHHH-HCCCCeEEEEcCCCC
Confidence            46799999999999999999999 457789999998853

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=95.80  E-value=0.053  Score=45.43  Aligned_cols=34  Identities=15%  Similarity=0.308  Sum_probs=30.0

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ...+|+|||+|-+|.-+|+.|++.  +.+++++=+.
T Consensus        31 ~gK~V~VvG~G~Sa~dia~~~~~~--~~~~~~~~~~   64 (235)
T d1w4xa2          31 SGQRVGVIGTGSSGIQVSPQIAKQ--AAELFVFQRT   64 (235)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHH--BSEEEEEESS
T ss_pred             CCCEEEEECCCccHHHHHHHHHhh--hccccccccc
Confidence            446899999999999999999999  8888888765

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.77  E-value=0.0031  Score=51.62  Aligned_cols=32  Identities=22%  Similarity=0.293  Sum_probs=30.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ..|.|||+|..|...|..++.+  |++|+++|+.
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~--G~~V~l~D~~   36 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASK--GTPILMKDIN   36 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHT--TCCEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhC--CCeEEEEECC
Confidence            4599999999999999999999  9999999987

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.68  E-value=0.0043  Score=51.56  Aligned_cols=31  Identities=23%  Similarity=0.275  Sum_probs=29.5

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      +|.|||.|..|+.+|..|+++  |.+|+.+|.+
T Consensus         2 kI~ViGlG~vGl~~a~~la~~--g~~V~g~D~n   32 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSAR--GHEVIGVDVS   32 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT--TCEEEEECSC
T ss_pred             EEEEECCCHhHHHHHHHHHhC--CCcEEEEeCC
Confidence            599999999999999999999  8999999986

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=95.64  E-value=0.0037  Score=57.77  Aligned_cols=37  Identities=27%  Similarity=0.579  Sum_probs=32.3

Q ss_pred             CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710           7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK   44 (473)
Q Consensus         7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~   44 (473)
                      .++|||+|||+|++|++.|.+|+ ..|+.+++++|+.+
T Consensus        15 ~~tyD~IIVGsG~aG~vlA~rLs-e~~~~~VLvLEaG~   51 (385)
T d1cf3a1          15 GRTVDYIIAGGGLTGLTTAARLT-ENPNISVLVIESGS   51 (385)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHT-TSTTCCEEEEESSC
T ss_pred             CCeEEEEEECcCHHHHHHHHHHH-HCCCCeEEEECCCC
Confidence            46799999999999999999998 45678999998775

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.62  E-value=0.0061  Score=57.15  Aligned_cols=44  Identities=20%  Similarity=0.311  Sum_probs=38.9

Q ss_pred             CCCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccCcccCccc
Q psy7710          54 SPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEKELGMHQT   99 (473)
Q Consensus        54 ~~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~~~g~~~s   99 (473)
                      .+.++||||+|-|+.=+.+|..|++.  |.||+-+|+++..|+...
T Consensus         3 lP~e~DVII~GTGL~ESILAaAlSr~--GkkVLHiD~N~yYGg~~a   46 (491)
T d1vg0a1           3 LPSDFDVIVIGTGLPESIIAAACSRS--GQRVLHVDSRSYYGGNWA   46 (491)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSSSCGGGC
T ss_pred             CCCccCEEEECCChHHHHHHHHHHhc--CCEEEEecCCCcCCCccc
Confidence            35789999999999999999999999  999999999987775533

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.25  E-value=0.007  Score=49.53  Aligned_cols=34  Identities=29%  Similarity=0.398  Sum_probs=30.9

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .+.+|+|||+|..|.+.|..|++.  |.+|+++.++
T Consensus         6 ~m~KI~ViGaG~wGtAlA~~La~~--g~~V~l~~r~   39 (189)
T d1n1ea2           6 YLNKAVVFGSGAFGTALAMVLSKK--CREVCVWHMN   39 (189)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTT--EEEEEEECSC
T ss_pred             eeceEEEECCCHHHHHHHHHHHHc--CCeEEEEEec
Confidence            345799999999999999999999  8999999986

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.14  E-value=0.008  Score=46.05  Aligned_cols=32  Identities=22%  Similarity=0.312  Sum_probs=30.0

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .++|||.|-.|..+|..|.+.  |.+|+++|+++
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~--g~~vvvid~d~   33 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRM--GHEVLAVDINE   33 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT--TCCCEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHC--CCeEEEecCcH
Confidence            489999999999999999999  99999999874

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.12  E-value=0.0091  Score=48.43  Aligned_cols=32  Identities=25%  Similarity=0.284  Sum_probs=29.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ++|.|||+|..|.+.|..|+++  |.+|.++.|.
T Consensus         1 MkI~ViGaG~~GtalA~~la~~--g~~V~l~~r~   32 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDN--GNEVRIWGTE   32 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHH--CCEEEEECCG
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCEEEEEEec
Confidence            3699999999999999999999  8999999774

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=95.10  E-value=0.014  Score=45.82  Aligned_cols=36  Identities=19%  Similarity=0.314  Sum_probs=31.0

Q ss_pred             CCcccEEEEcCChHHHHHHHHHHhcCCC-CeEEEEeccC
Q psy7710          55 PALYDVVVVGGGIVGVATARELKLNYPK-MKICLVEKEK   92 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G-~~V~viE~~~   92 (473)
                      .++.+|.|||+|-.|.++|+.|+..  + .+++++|...
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~--~~~el~L~D~~~   41 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALR--ELADVVLYDVVK   41 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSS
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhC--CCceEEEEEecc
Confidence            3678999999999999999999988  5 4899999763

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=94.99  E-value=0.011  Score=47.04  Aligned_cols=31  Identities=26%  Similarity=0.410  Sum_probs=29.3

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      +|.|||.|..|.+.|..|+++  |.+|+++|+.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~   32 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQ   32 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCEEEEECSC
T ss_pred             EEEEEeecHHHHHHHHHHHHC--CCEEEEEECC
Confidence            589999999999999999999  9999999986

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.92  E-value=0.018  Score=44.82  Aligned_cols=36  Identities=28%  Similarity=0.313  Sum_probs=30.6

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ...+|.|||+|-.|.++|+.|+.++...+++++|..
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~   40 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeec
Confidence            456899999999999999999998433479999976

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.82  E-value=0.01  Score=52.57  Aligned_cols=36  Identities=36%  Similarity=0.669  Sum_probs=30.4

Q ss_pred             CCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccccc
Q psy7710           9 LYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEF   46 (473)
Q Consensus         9 ~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~   46 (473)
                      |||++|||+|++|+++|..|+..  +..+.+++..+..
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~--g~~V~iiEk~~~i   36 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKL--NKKVLVIEKRNHI   36 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGG--TCCEEEECSSSSS
T ss_pred             CccEEEECCcHHHHHHHHHHHhC--CCcEEEEECCCCc
Confidence            79999999999999999999854  5678888876544

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.53  E-value=0.015  Score=45.48  Aligned_cols=34  Identities=26%  Similarity=0.437  Sum_probs=30.6

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ....|+|||||..|+.-|..|.+.  |.+|+|+...
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~--GA~VtVvap~   45 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPT--GCKLTLVSPD   45 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGG--TCEEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCC
Confidence            346799999999999999999999  9999999754

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.48  E-value=0.019  Score=48.82  Aligned_cols=61  Identities=10%  Similarity=0.116  Sum_probs=45.9

Q ss_pred             eEecCCccceeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcC--CeEEEEcCCCcEEEcCEEEEc
Q psy7710         192 AIHSPNTGIVDWGLVTRVMGEEFCELGGEIRLNQQVESFKENP--ESVTISTKQGDHLESSYALVC  255 (473)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~~v~v~~~~g~~i~ad~VV~a  255 (473)
                      +++.+..|.   ..+.+.|.+.++++|++|+++++|++|..++  +.+.+.+.+|++++||+||..
T Consensus       227 ~~~~~~gG~---~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~~  289 (297)
T d2bcgg1         227 PYLYPMYGL---GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIAD  289 (297)
T ss_dssp             SEEEETTCT---THHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEETTEEEECSCEEEC
T ss_pred             cceeccCcH---HHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEcCCEEEECCEEEEC
Confidence            344444443   5688899999999999999999999997653  456544456679999998764

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.26  E-value=0.025  Score=41.68  Aligned_cols=33  Identities=27%  Similarity=0.288  Sum_probs=30.4

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ...|+|||+|-+|..-|..|.+.  |.+|+++...
T Consensus        12 ~k~vlVvG~G~va~~ka~~ll~~--ga~v~v~~~~   44 (113)
T d1pjqa1          12 DRDCLIVGGGDVAERKARLLLEA--GARLTVNALT   44 (113)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT--TBEEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEecc
Confidence            45799999999999999999999  9999999865

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=94.25  E-value=0.016  Score=52.65  Aligned_cols=35  Identities=34%  Similarity=0.498  Sum_probs=30.2

Q ss_pred             CCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710           8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK   44 (473)
Q Consensus         8 ~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~   44 (473)
                      +.|||+|||+|.+|+++|.+|+..  +.+++++|+..
T Consensus         1 t~YD~IIVGsG~aG~v~A~rLae~--g~~VlvLEaG~   35 (360)
T d1kdga1           1 TPYDYIIVGAGPGGIIAADRLSEA--GKKVLLLERGG   35 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSC
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhC--CCeEEEEEccC
Confidence            469999999999999999999953  56899998774

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=94.20  E-value=0.04  Score=43.27  Aligned_cols=36  Identities=28%  Similarity=0.257  Sum_probs=30.5

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .+.+|.|||+|-.|.++|+.|+.++---+++++|..
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            356899999999999999999998322389999976

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=94.15  E-value=0.03  Score=43.69  Aligned_cols=35  Identities=29%  Similarity=0.474  Sum_probs=31.5

Q ss_pred             CcccEEEEc-CChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          56 ALYDVVVVG-GGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        56 ~~~dVvIIG-aGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ....|.||| .|..|.+.|..|.++  |++|.++|+..
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~--G~~V~~~d~~~   43 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRAS--GYPISILDRED   43 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTT--TCCEEEECTTC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHc--CCCcEeccccc
Confidence            445799999 699999999999999  99999999873

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.14  E-value=0.041  Score=43.16  Aligned_cols=36  Identities=31%  Similarity=0.384  Sum_probs=30.5

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .+.+|.|||+|-.|.++|+.|...+...+++++|..
T Consensus        18 ~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~   53 (159)
T d2ldxa1          18 SRCKITVVGVGDVGMACAISILLKGLADELALVDAD   53 (159)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            346799999999999999999998433489999976

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=94.10  E-value=0.024  Score=49.30  Aligned_cols=36  Identities=36%  Similarity=0.561  Sum_probs=30.7

Q ss_pred             CCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccc
Q psy7710           8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE   45 (473)
Q Consensus         8 ~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~   45 (473)
                      +.||++|||+|++|+++|..|+..  +.++.++++...
T Consensus         2 ~~yDvvIIGaGi~Gls~A~~La~~--G~~V~viE~~~~   37 (281)
T d2gf3a1           2 THFDVIVVGAGSMGMAAGYQLAKQ--GVKTLLVDAFDP   37 (281)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSCS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCCC
Confidence            579999999999999999999964  678888887543

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.93  E-value=0.025  Score=46.15  Aligned_cols=31  Identities=23%  Similarity=0.287  Sum_probs=28.7

Q ss_pred             cEEEE-cCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          59 DVVVV-GGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        59 dVvII-GaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      +|.|| |+|-.|.++|..|+++  |.+|++..|+
T Consensus         2 ki~vigGaG~iG~alA~~la~~--G~~V~l~~R~   33 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATL--GHEIVVGSRR   33 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTT--TCEEEEEESS
T ss_pred             EEEEEeCCcHHHHHHHHHHHHC--CCEEEEEECC
Confidence            58999 6799999999999999  9999999986

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=93.38  E-value=0.047  Score=41.99  Aligned_cols=34  Identities=26%  Similarity=0.388  Sum_probs=29.1

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      +|.|||+|-.|.++|+.|+..+...+++++|...
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            6999999999999999999983335899999763

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=93.33  E-value=0.045  Score=42.32  Aligned_cols=34  Identities=21%  Similarity=0.254  Sum_probs=28.5

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .+|.|||+|-.|.++|+.|+.++--.+++++|..
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   35 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecc
Confidence            3699999999999999999988322489999976

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=93.32  E-value=0.052  Score=41.74  Aligned_cols=34  Identities=24%  Similarity=0.234  Sum_probs=29.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .+|.|||+|-.|.++|+.|+.++-..+++++|..
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~   35 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   35 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            3699999999999999999998433489999976

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=93.31  E-value=0.053  Score=41.68  Aligned_cols=35  Identities=26%  Similarity=0.456  Sum_probs=29.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .+|.|||+|-.|.++|+.|+.++-.-+++++|...
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~   36 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   36 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence            36999999999999999999984334899999764

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=93.17  E-value=0.044  Score=42.19  Aligned_cols=33  Identities=27%  Similarity=0.366  Sum_probs=28.2

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .+|.|||+|-.|.++|+.|+.++ -.+++++|..
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~-l~dl~l~D~~   34 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKE-LGDIVLLDIV   34 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCC-cceEEEEeec
Confidence            36999999999999999999883 2489999975

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.11  E-value=0.035  Score=40.37  Aligned_cols=34  Identities=21%  Similarity=0.069  Sum_probs=29.0

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ...+|+|||+|.+|.-.|..|++.  ..+|+++-+.
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~~--ak~v~~~~~r   64 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTPV--AKHPIYQSLL   64 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTT--SCSSEEEECT
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHh--cCEEEEEEec
Confidence            346899999999999999999988  6777777665

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=93.10  E-value=0.024  Score=51.31  Aligned_cols=34  Identities=38%  Similarity=0.569  Sum_probs=29.0

Q ss_pred             CCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccc
Q psy7710           9 LYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE   45 (473)
Q Consensus         9 ~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~   45 (473)
                      +|||+|||+|.+|+++|.+|+.   +.++.++|+.+.
T Consensus        26 ~YD~IIVGsG~aG~vlA~rLae---~~kVLvLEaG~~   59 (351)
T d1ju2a1          26 SYDYVIVGGGTSGCPLAATLSE---KYKVLVLERGSL   59 (351)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTT---TSCEEEECSSBC
T ss_pred             CccEEEECccHHHHHHHHHhcC---CCCEEEEecCCC
Confidence            4999999999999999999984   367888887753

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.07  E-value=0.091  Score=38.28  Aligned_cols=36  Identities=25%  Similarity=0.366  Sum_probs=32.4

Q ss_pred             CCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          55 PALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      +..+.|.|+|||--|...|....+.  |++|.++|.++
T Consensus         9 ~~~~kigIlGgGQL~rMla~aA~~l--G~~v~v~d~~~   44 (111)
T d1kjqa2           9 PAATRVMLLGSGELGKEVAIECQRL--GVEVIAVDRYA   44 (111)
T ss_dssp             TTCCEEEEESCSHHHHHHHHHHHTT--TCEEEEEESST
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHC--CCEEEEEcCCC
Confidence            3556899999999999999999999  99999999874

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.00  E-value=0.056  Score=42.97  Aligned_cols=33  Identities=30%  Similarity=0.344  Sum_probs=28.6

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .|.|||.|..|.+.|..|.+.++..+|..+|++
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~   35 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   35 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECC
Confidence            499999999999999999998444578888886

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=92.93  E-value=0.054  Score=45.99  Aligned_cols=35  Identities=29%  Similarity=0.486  Sum_probs=29.0

Q ss_pred             CCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710           8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK   44 (473)
Q Consensus         8 ~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~   44 (473)
                      +.||.+|||+|++|..+|..++..  +.++.++++.+
T Consensus         1 M~yDViIIGaG~aGl~aA~~la~~--G~~V~liEk~~   35 (251)
T d2i0za1           1 MHYDVIVIGGGPSGLMAAIGAAEE--GANVLLLDKGN   35 (251)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCC
Confidence            369999999999999999999854  56787887654

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=92.89  E-value=0.055  Score=43.05  Aligned_cols=34  Identities=9%  Similarity=0.145  Sum_probs=30.6

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ...+|+|+|+|-++-++++.|.+.  |.+|+|+.|.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~--g~~i~I~nRt   50 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSL--DCAVTITNRT   50 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHhccc--ceEEEeccch
Confidence            345799999999999999999999  8899999886

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.87  E-value=0.059  Score=41.29  Aligned_cols=33  Identities=27%  Similarity=0.356  Sum_probs=28.5

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      +|.|||+|-.|.++|+.|+.++-..+++++|..
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~   34 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD   34 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecc
Confidence            699999999999999999988433589999975

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=92.78  E-value=0.056  Score=43.28  Aligned_cols=34  Identities=12%  Similarity=0.322  Sum_probs=31.2

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      +.+|-|||-|..|...|..|.++  |++|.++++.+
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~--G~~V~v~dr~~   35 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDH--GFVVCAFNRTV   35 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT--TCCEEEECSST
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHC--CCeEEEEcCCH
Confidence            35799999999999999999999  99999999873

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.73  E-value=0.063  Score=41.22  Aligned_cols=34  Identities=32%  Similarity=0.357  Sum_probs=28.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ++|.|||+|-.|.++|+.|+.++---+++++|..
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   34 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA   34 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecc
Confidence            3699999999999999999988322479999976

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.68  E-value=0.06  Score=41.46  Aligned_cols=33  Identities=33%  Similarity=0.418  Sum_probs=27.8

Q ss_pred             cEEEEcC-ChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          59 DVVVVGG-GIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        59 dVvIIGa-Gi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      +|.|||| |-.|.++|+.|+.++--.++.++|..
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~   35 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGRE   35 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccch
Confidence            6999996 99999999999988211489999976

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.59  E-value=0.049  Score=44.53  Aligned_cols=30  Identities=23%  Similarity=0.397  Sum_probs=26.9

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      +|.|||.|..|+.+|..++ +  |.+|+.+|-+
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~--g~~V~g~Din   31 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-L--QNEVTIVDIL   31 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-T--TSEEEEECSC
T ss_pred             EEEEECCChhHHHHHHHHH-C--CCcEEEEECC
Confidence            5999999999999998776 5  7899999986

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=92.55  E-value=0.12  Score=41.31  Aligned_cols=80  Identities=20%  Similarity=0.241  Sum_probs=54.5

Q ss_pred             CCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccccccc------------------------------------cC
Q psy7710           8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSM------------------------------------SS   51 (473)
Q Consensus         8 ~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~~~~------------------------------------~~   51 (473)
                      +..+.+|||+|.+|.++|..++..  +..+.++++.+.....                                    .+
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~--G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt  119 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAAR--GHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVT  119 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTT--TCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCC
T ss_pred             CCcEEEEECccHHHHHHHHHHHhh--ccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEEc
Confidence            446899999999999999999854  5677777765433110                                    01


Q ss_pred             CCCCCcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          52 SQSPALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        52 ~~~~~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ......+|.+|+..|.............  |.+|.++.-.
T Consensus       120 ~~~~~~~d~vilAtG~~~~~~~~pg~~~--g~~v~viggg  157 (179)
T d1ps9a3         120 ADQLQAFDETILASGIPNRALAQPLIDS--GKTVHLIGGC  157 (179)
T ss_dssp             SSSSCCSSEEEECCCEECCTTHHHHHTT--TCCEEECGGG
T ss_pred             ccccccceeEEEeecCCCcccccchhcc--CCEEEEECCc
Confidence            1223468899999987665555555555  6788877544

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.53  E-value=0.056  Score=42.58  Aligned_cols=32  Identities=19%  Similarity=0.367  Sum_probs=29.8

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      +|.|||-|..|...|..|+++  |++|.++++.+
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~--G~~V~~~d~~~   33 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKA--GYSLVVSDRNP   33 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT--TCEEEEECSCH
T ss_pred             EEEEEehhHHHHHHHHHHHHC--CCeEEEEeCCc
Confidence            589999999999999999999  99999999873

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=92.47  E-value=0.042  Score=49.83  Aligned_cols=55  Identities=16%  Similarity=0.238  Sum_probs=41.8

Q ss_pred             HcCcEEEeCceEEEEEEcC--CeE-EEE---cCCCc--EEEcCEEEEcCCcC-hHHHHHhcCCC
Q psy7710         216 ELGGEIRLNQQVESFKENP--ESV-TIS---TKQGD--HLESSYALVCAGLQ-ADEMALKSGCS  270 (473)
Q Consensus       216 ~~Gv~i~~~~~V~~i~~~~--~~v-~v~---~~~g~--~i~ad~VV~aaG~~-s~~l~~~~g~~  270 (473)
                      +.|++|++++.|++|..++  +++ .|+   ..+|+  .++|+.||+|+|+. +..|+...|+.
T Consensus       230 ~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~~vilaaGa~~tp~lL~~Sg~~  293 (379)
T d2f5va1         230 EERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFG  293 (379)
T ss_dssp             EEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEEEEEEEEECSCHHHHHHHHHHTTSS
T ss_pred             CCCCEEecCCEEEEEEEeCCCCEEEEEEEEECCCCEEEEEeceEEEeccCccCCHHHHhhcccc
Confidence            4578999999999999864  223 233   34453  57899999999998 88888888765

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=92.42  E-value=0.11  Score=43.19  Aligned_cols=44  Identities=9%  Similarity=0.028  Sum_probs=35.0

Q ss_pred             cCcEEEeCceEEEEEEcCCeE-EEEcCCCcEEEcCEEEEcCCcChH
Q psy7710         217 LGGEIRLNQQVESFKENPESV-TISTKQGDHLESSYALVCAGLQAD  261 (473)
Q Consensus       217 ~Gv~i~~~~~V~~i~~~~~~v-~v~~~~g~~i~ad~VV~aaG~~s~  261 (473)
                      .++.|+ ...|+++..+++.+ .|+|.+|.+++|+.||+|||.+..
T Consensus        81 ~nL~i~-q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTFL~  125 (230)
T d2cula1          81 RPLHLF-QATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLG  125 (230)
T ss_dssp             TTEEEE-ECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSS
T ss_pred             cCHHHH-hccceeeEecccceeeEEeccccEEEEeEEEEccCccee
Confidence            467776 55677887777655 599999989999999999998853

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=92.42  E-value=0.065  Score=42.55  Aligned_cols=31  Identities=19%  Similarity=0.352  Sum_probs=28.1

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .|+|+|+|..|+.++..+...  |.+|+++|+.
T Consensus        29 ~vlV~G~G~vG~~~~~~ak~~--Ga~vi~v~~~   59 (170)
T d1e3ja2          29 TVLVIGAGPIGLVSVLAAKAY--GAFVVCTARS   59 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCEEEEEESC
T ss_pred             EEEEEcccccchhhHhhHhhh--cccccccchH
Confidence            599999999999999888777  8999999987

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.33  E-value=0.064  Score=42.28  Aligned_cols=31  Identities=16%  Similarity=0.246  Sum_probs=29.6

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .|.|||-|..|...|.+|+++  |++|.++|+.
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~--g~~v~~~d~~   33 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKA--GYLLNVFDLV   33 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT--TCEEEEECSS
T ss_pred             EEEEEEEHHHHHHHHHHHHHC--CCeEEEEECc
Confidence            599999999999999999999  9999999987

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=92.28  E-value=0.073  Score=44.61  Aligned_cols=36  Identities=22%  Similarity=0.460  Sum_probs=27.1

Q ss_pred             CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecc
Q psy7710           7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKE   43 (473)
Q Consensus         7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~   43 (473)
                      +++||.+|||+|.+|.++|..++.. ...++.+.+..
T Consensus         1 ~~~YDviIIG~GpaGl~aA~~aa~~-g~k~V~iie~~   36 (238)
T d1aoga1           1 SKIFDLVVIGAGSGGLEAAWNAATL-YKKRVAVIDVQ   36 (238)
T ss_dssp             CCSBSEEEECCSHHHHHHHHHHHHT-SCCCEEEEESC
T ss_pred             CCccCEEEECCCHHHHHHHHHHHHc-CCCEEEEEEee
Confidence            4789999999999999999988843 23345555543

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=92.27  E-value=0.068  Score=42.80  Aligned_cols=32  Identities=28%  Similarity=0.461  Sum_probs=30.0

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ++|-|||-|..|...|.+|.++  |.+|.++++.
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~--G~~V~~~dr~   33 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEK--GFKVAVFNRT   33 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT--TCCEEEECSS
T ss_pred             CEEEEEeehHHHHHHHHHHHHC--CCeEEEEECC
Confidence            4699999999999999999999  9999999986

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.94  E-value=0.096  Score=43.45  Aligned_cols=34  Identities=32%  Similarity=0.462  Sum_probs=28.1

Q ss_pred             CCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecc
Q psy7710           8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKE   43 (473)
Q Consensus         8 ~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~   43 (473)
                      ..||.+|||+|.+|..+|..++..  +.++.+++..
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~--G~~V~viE~~   35 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQL--GLKTALIEKY   35 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHH--TCCEEEEECC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHC--CCeEEEEecc
Confidence            579999999999999999998855  5677777654

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.71  E-value=0.089  Score=41.78  Aligned_cols=31  Identities=23%  Similarity=0.354  Sum_probs=27.7

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      .|+|+|+|..|+.++..+...  |. +|+++|+.
T Consensus        29 ~VlI~G~G~iG~~~~~~a~~~--G~~~Vi~~d~~   60 (171)
T d1pl8a2          29 KVLVCGAGPIGMVTLLVAKAM--GAAQVVVTDLS   60 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCSEEEEEESC
T ss_pred             EEEEECCCccHHHHHHHHHHc--CCceEEeccCC
Confidence            599999999999999888888  76 79999987

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=91.70  E-value=0.062  Score=44.51  Aligned_cols=33  Identities=30%  Similarity=0.561  Sum_probs=26.6

Q ss_pred             CCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEec
Q psy7710           8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEK   42 (473)
Q Consensus         8 ~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~   42 (473)
                      +.||.+|||+|.+|..+|..++..  +.++.++++
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~--G~kV~iiE~   33 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMY--GQKCALIEA   33 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTT--TCCEEEEES
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC--CCEEEEEec
Confidence            469999999999999999998843  456666654

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.70  E-value=0.088  Score=43.54  Aligned_cols=44  Identities=25%  Similarity=0.522  Sum_probs=35.7

Q ss_pred             CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccccccccc
Q psy7710           7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEFFSMS   50 (473)
Q Consensus         7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~~~~~   50 (473)
                      ++.++++|||+|.+|+.+|..+....+..++.++..++...+++
T Consensus         2 p~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r   45 (213)
T d1m6ia1           2 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMR   45 (213)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCS
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccc
Confidence            56789999999999999999998888888888887776554443

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=91.63  E-value=0.091  Score=41.58  Aligned_cols=34  Identities=21%  Similarity=0.260  Sum_probs=29.9

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      ...+|+|+|+|-++-++++.|.+.  |. +|.|+.|.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~--g~~~I~I~nR~   50 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNS--GFEKLKIYARN   50 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHT--TCCCEEEECSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHC--CCCEEEEeccc
Confidence            346799999999999999999999  64 79999886

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.56  E-value=0.092  Score=47.81  Aligned_cols=59  Identities=24%  Similarity=0.302  Sum_probs=42.7

Q ss_pred             eeHHHHHHHHHHHHHHcCcEEEeCceEEEEEEcCCeE-E-EEc------CCC---------cEEEcCEEEEcCCcC
Q psy7710         201 VDWGLVTRVMGEEFCELGGEIRLNQQVESFKENPESV-T-IST------KQG---------DHLESSYALVCAGLQ  259 (473)
Q Consensus       201 ~~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v-~-v~~------~~g---------~~i~ad~VV~aaG~~  259 (473)
                      +.-..+..++.+.++..|+++.....+.++..++.++ . +.+      .++         ....++..+++.|..
T Consensus       138 ~~~~~~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~~  213 (380)
T d2gmha1         138 VRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCH  213 (380)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTT
T ss_pred             ehhhHHHHHHHHHHhhccceeeeecceeeeeeccCCceeecccccccccccccccccccccccccccEEEEeeeCC
Confidence            3346788899999999999999999999998865432 1 211      111         245688899999875

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.43  E-value=0.1  Score=41.31  Aligned_cols=33  Identities=18%  Similarity=0.164  Sum_probs=28.3

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      -.|+|+|+|..|+.++..+...  |.+|+++++.+
T Consensus        29 ~~vlI~GaG~vG~~a~q~ak~~--G~~vi~~~~~~   61 (168)
T d1piwa2          29 KKVGIVGLGGIGSMGTLISKAM--GAETYVISRSS   61 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSS
T ss_pred             CEEEEECCCCcchhHHHHhhhc--cccccccccch
Confidence            3599999999999988877777  89999999863

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.97  E-value=0.12  Score=40.77  Aligned_cols=31  Identities=13%  Similarity=0.215  Sum_probs=27.5

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .|+|+|+|..|+.++..+...  |.+|+++++.
T Consensus        30 ~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~   60 (166)
T d1llua2          30 WVAISGIGGLGHVAVQYARAM--GLHVAAIDID   60 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCEEEEEESC
T ss_pred             EEEEeeccccHHHHHHHHHHc--CCccceecch
Confidence            599999999999988877777  8999999986

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=90.91  E-value=0.13  Score=39.72  Aligned_cols=35  Identities=23%  Similarity=0.306  Sum_probs=29.0

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      +.+|.|||+|-.|.++|+.|.+.+- .+++++|...
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l-~el~L~Di~~   37 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNL-GDVVLFDIVK   37 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-CeEEEEeccC
Confidence            3579999999999999998888732 4899999763

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=90.74  E-value=0.084  Score=45.42  Aligned_cols=34  Identities=41%  Similarity=0.618  Sum_probs=28.9

Q ss_pred             CCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710           9 LYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK   44 (473)
Q Consensus         9 ~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~   44 (473)
                      .||.+|||+|++|.++|..|+..  +.++.++++..
T Consensus         4 ~~DvvIIGaGi~Gls~A~~La~~--G~~V~vlE~~~   37 (276)
T d1ryia1           4 HYEAVVIGGGIIGSAIAYYLAKE--NKNTALFESGT   37 (276)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCC
Confidence            58999999999999999999965  56787887653

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.72  E-value=0.13  Score=39.52  Aligned_cols=33  Identities=24%  Similarity=0.272  Sum_probs=27.5

Q ss_pred             cEEEEcC-ChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          59 DVVVVGG-GIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        59 dVvIIGa-Gi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      +|+|||| |..|.++|+.|+.++---+++++|..
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~   35 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA   35 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEecc
Confidence            5999996 99999999999988322479999976

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.68  E-value=0.16  Score=41.96  Aligned_cols=34  Identities=32%  Similarity=0.415  Sum_probs=27.4

Q ss_pred             CCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecc
Q psy7710           8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKE   43 (473)
Q Consensus         8 ~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~   43 (473)
                      ..||.+|||+|.+|.++|..++..  +.++.+++..
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~--G~kV~vie~~   35 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQL--GFKTTCIEKR   35 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHH--TCCEEEEECS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHC--CCcEEEEEec
Confidence            469999999999999999988854  4567666644

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=90.56  E-value=0.11  Score=40.20  Aligned_cols=31  Identities=19%  Similarity=0.191  Sum_probs=28.9

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      +|.|||.|..|...|..|+++  |.+|++.++.
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~--g~~v~~~~~~   32 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSR--GVEVVTSLEG   32 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHT--TCEEEECCTT
T ss_pred             EEEEEcHHHHHHHHHHHHHHC--CCeEEEEcCc
Confidence            589999999999999999999  8999999876

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=90.46  E-value=0.14  Score=39.65  Aligned_cols=32  Identities=16%  Similarity=0.316  Sum_probs=29.7

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .++|+|.|-.|..++..|.+.  |.+|+++|..+
T Consensus         5 HiII~G~g~~g~~l~~~L~~~--~~~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQR--GQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT--TCCEEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHc--CCCEEEEeccc
Confidence            599999999999999999999  89999999864

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=90.28  E-value=0.17  Score=44.47  Aligned_cols=38  Identities=26%  Similarity=0.331  Sum_probs=32.1

Q ss_pred             CCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccc
Q psy7710           8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE   45 (473)
Q Consensus         8 ~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~   45 (473)
                      ..+|.||||+|+||..+|..+....++.++.++++...
T Consensus         4 ~~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~   41 (311)
T d1kf6a2           4 FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYP   41 (311)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCG
T ss_pred             eecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCC
Confidence            45899999999999999999887777888888876643

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=90.14  E-value=0.13  Score=44.96  Aligned_cols=37  Identities=35%  Similarity=0.372  Sum_probs=30.7

Q ss_pred             CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccc
Q psy7710           7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE   45 (473)
Q Consensus         7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~   45 (473)
                      ...||.+|||+|++|+++|..++..  +.++.++++.+.
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~~--G~~V~lvEK~~~   50 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATDS--GAKVILIEKEPV   50 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCC
Confidence            4569999999999999999999864  578888876653

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.00  E-value=0.14  Score=42.20  Aligned_cols=33  Identities=36%  Similarity=0.586  Sum_probs=25.9

Q ss_pred             CCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEec
Q psy7710           8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEK   42 (473)
Q Consensus         8 ~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~   42 (473)
                      .+||.+|||+|.+|..+|..++..  +.++.+++.
T Consensus         2 ~~yDviIIG~GpaG~~aA~~aar~--G~kV~vIEk   34 (221)
T d3grsa1           2 ASYDYLVIGGGSGGLASARRAAEL--GARAAVVES   34 (221)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHT--TCCEEEEES
T ss_pred             CccCEEEECCCHHHHHHHHHHHHC--CCEEEEEec
Confidence            479999999999999999988843  445655553

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=89.95  E-value=0.15  Score=40.75  Aligned_cols=31  Identities=16%  Similarity=0.250  Sum_probs=27.3

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      .|+|+|+|..|+.++..+...  |. +|+++|++
T Consensus        31 ~VlV~GaG~iG~~~~~~ak~~--Ga~~Vi~~~~~   62 (182)
T d1vj0a2          31 TVVIQGAGPLGLFGVVIARSL--GAENVIVIAGS   62 (182)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TBSEEEEEESC
T ss_pred             EEEEECCCccchhheeccccc--ccccccccccc
Confidence            599999999999988888877  76 79999986

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.78  E-value=0.11  Score=43.36  Aligned_cols=34  Identities=32%  Similarity=0.437  Sum_probs=27.1

Q ss_pred             CCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecc
Q psy7710           8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKE   43 (473)
Q Consensus         8 ~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~   43 (473)
                      +.||.+|||+|.+|..+|..++..  +.++.+++..
T Consensus         4 ~~yDviVIG~GpAGl~aA~~aa~~--G~kV~lie~~   37 (233)
T d1v59a1           4 KSHDVVIIGGGPAGYVAAIKAAQL--GFNTACVEKR   37 (233)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred             cccCEEEECCCHHHHHHHHHHHHC--CCcEEEEEec
Confidence            469999999999999999998843  5566666543

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=89.69  E-value=0.2  Score=38.16  Aligned_cols=33  Identities=30%  Similarity=0.437  Sum_probs=27.5

Q ss_pred             cEEEEc-CChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          59 DVVVVG-GGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        59 dVvIIG-aGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      +|.||| +|-.|.++|+.|..++.--+++++|..
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~   35 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP   35 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCG
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecC
Confidence            599999 699999999999998433479999853

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=89.60  E-value=0.17  Score=42.84  Aligned_cols=35  Identities=17%  Similarity=0.328  Sum_probs=28.9

Q ss_pred             CCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710           8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK   44 (473)
Q Consensus         8 ~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~   44 (473)
                      +.||.+|||+|++|..+|..++..  +.++.++++.+
T Consensus         3 ~~~DViIIGaG~aGl~aA~~la~~--G~~V~vlEk~~   37 (253)
T d2gqfa1           3 QYSENIIIGAGAAGLFCAAQLAKL--GKSVTVFDNGK   37 (253)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHC--CCcEEEEecCC
Confidence            358999999999999999998854  56787887654

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=89.58  E-value=0.085  Score=47.19  Aligned_cols=40  Identities=30%  Similarity=0.557  Sum_probs=30.9

Q ss_pred             CCCCCcEEEEccChHHHHHHHHHhh---hCCCCcEEEEecccc
Q psy7710           6 SPTLYDMVVVGGGIVGVATARELKL---KYPKMKTCLVEKEKE   45 (473)
Q Consensus         6 ~~~~~~~~vvg~g~ag~~~a~~l~~---~~~~~~~~~~~~~~~   45 (473)
                      +-+.||.+|||||++|.++|..|+.   ...+.++.++++.+.
T Consensus         4 ~~~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~   46 (360)
T d1pn0a1           4 SESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   46 (360)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence            3456999999999999999998864   234677888887653

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=89.16  E-value=0.21  Score=38.23  Aligned_cols=34  Identities=29%  Similarity=0.334  Sum_probs=27.3

Q ss_pred             ccEEEEc-CChHHHHHHHHHHhc-CCCCeEEEEecc
Q psy7710          58 YDVVVVG-GGIVGVATARELKLN-YPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIG-aGi~Gl~~A~~L~~~-~~G~~V~viE~~   91 (473)
                      .+|.||| +|-.|.++|+.|+.+ +-..++.++|..
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~   36 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA   36 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc
Confidence            3699999 599999999998643 225689999975

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=89.03  E-value=0.19  Score=38.91  Aligned_cols=31  Identities=16%  Similarity=0.289  Sum_probs=28.8

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      +|.|||+|..|.+.|..|.+.  +.+|++.++.
T Consensus         2 kIg~IG~G~mG~al~~~l~~~--~~~i~v~~r~   32 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQT--PHELIISGSS   32 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTS--SCEEEEECSS
T ss_pred             EEEEEeccHHHHHHHHHHHhC--CCeEEEEcCh
Confidence            589999999999999999998  8899999886

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.91  E-value=0.22  Score=41.41  Aligned_cols=36  Identities=25%  Similarity=0.426  Sum_probs=29.6

Q ss_pred             CCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccc
Q psy7710           8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE   45 (473)
Q Consensus         8 ~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~   45 (473)
                      ..||.+|||+|.+|.++|..++..  +.++.+++..+.
T Consensus         2 ~dYDviVIG~GpaGl~aA~~aa~~--G~kV~viE~~~~   37 (235)
T d1h6va1           2 YDFDLIIIGGGSGGLAAAKEAAKF--DKKVMVLDFVTP   37 (235)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHGGG--CCCEEEECCCCC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHC--CCeEEEEeccCC
Confidence            469999999999999999998854  677878876543

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=88.71  E-value=0.17  Score=40.39  Aligned_cols=55  Identities=15%  Similarity=0.149  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHcCcEEEeCceEEEEEEcC---CeEEEEcCCCcEEEcCEEEEcCCcCh
Q psy7710         206 VTRVMGEEFCELGGEIRLNQQVESFKENP---ESVTISTKQGDHLESSYALVCAGLQA  260 (473)
Q Consensus       206 ~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~---~~v~v~~~~g~~i~ad~VV~aaG~~s  260 (473)
                      +...+...+++.+.++.....+..+....   ........+..++.++.+++++|...
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  115 (184)
T d1fl2a1          58 LAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKL  115 (184)
T ss_dssp             HHHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEE
T ss_pred             HHHHHHHHhhheeceeeccceeeeecccccccceeeeeeecceeeecccccccccccc
Confidence            34445556666778888888887776543   22334444545889999999999763

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=88.59  E-value=0.23  Score=39.04  Aligned_cols=32  Identities=19%  Similarity=0.109  Sum_probs=27.4

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      -.|+|+|+|..|+.++..+...  |.+|++++..
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~--Ga~~i~~~~~   63 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTS   63 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESS
T ss_pred             CEEEEeccchHHHHHHHHhhcc--cccchhhccc
Confidence            3599999999999888777777  8999999876

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=88.55  E-value=0.21  Score=39.65  Aligned_cols=31  Identities=35%  Similarity=0.413  Sum_probs=27.0

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      .|+|+|+|..|+.++..+...  |. +|+++|+.
T Consensus        30 ~VlI~GaG~vGl~~~q~ak~~--Ga~~Vi~~d~~   61 (174)
T d1jqba2          30 SVVVIGIGAVGLMGIAGAKLR--GAGRIIGVGSR   61 (174)
T ss_dssp             CEEEECCSHHHHHHHHHHHTT--TCSCEEEECCC
T ss_pred             EEEEEcCCcchhhhhhhhhcc--cccccccccch
Confidence            599999999999988888877  75 79999986

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=88.43  E-value=0.32  Score=40.86  Aligned_cols=34  Identities=24%  Similarity=0.437  Sum_probs=27.8

Q ss_pred             CCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710           9 LYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK   44 (473)
Q Consensus         9 ~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~   44 (473)
                      ..+.+|||+|++|.++|..|+..  +.++.+++++.
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~--G~~V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARK--GYSVHILARDL   39 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSC
T ss_pred             CCcEEEECccHHHHHHHHHHHHC--CCCEEEEeCCC
Confidence            34799999999999999999965  44677887654

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=88.20  E-value=0.23  Score=40.90  Aligned_cols=33  Identities=27%  Similarity=0.361  Sum_probs=25.8

Q ss_pred             CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEe
Q psy7710           7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVE   41 (473)
Q Consensus         7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~   41 (473)
                      +..||.+|||+|.+|..+|..++..  +.++.+++
T Consensus         3 ~~~~DlvVIG~GpaGl~aA~~aa~~--G~~V~liE   35 (220)
T d1lvla1           3 TIQTTLLIIGGGPGGYVAAIRAGQL--GIPTVLVE   35 (220)
T ss_dssp             CEECSEEEECCSHHHHHHHHHHHHH--TCCEEEEC
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHC--CCcEEEEe
Confidence            5679999999999999999988854  34554544

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=88.14  E-value=0.2  Score=41.60  Aligned_cols=35  Identities=34%  Similarity=0.486  Sum_probs=28.0

Q ss_pred             CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecc
Q psy7710           7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKE   43 (473)
Q Consensus         7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~   43 (473)
                      ...||.+|||+|.+|.++|..++..  +.++.+++..
T Consensus         4 ~~dyDviIIG~GPaGlsaA~~aa~~--G~~V~viE~~   38 (229)
T d1ojta1           4 DAEYDVVVLGGGPGGYSAAFAAADE--GLKVAIVERY   38 (229)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHC--CCeEEEEecc
Confidence            3569999999999999999998843  5567677644

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=88.12  E-value=0.2  Score=39.66  Aligned_cols=34  Identities=18%  Similarity=0.218  Sum_probs=30.1

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ....|+|+|+|-++-++++.|.+.  +.+|+|+.|.
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~--~~~i~I~nR~   50 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQA--QQNIVLANRT   50 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHT--TCEEEEEESS
T ss_pred             CCCEEEEECCcHHHHHHHHHHccc--Cceeeeccch
Confidence            345799999999999999999986  7899999986

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=88.09  E-value=0.25  Score=38.11  Aligned_cols=32  Identities=25%  Similarity=0.377  Sum_probs=28.5

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      +|.+||+|-.|.+.|..|.+.+ +.+|.+++|.
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~-~~~i~v~~r~   33 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQG-GYRIYIANRG   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHC-SCEEEEECSS
T ss_pred             EEEEEcCcHHHHHHHHHHHHCC-CCcEEEEeCC
Confidence            5899999999999999998884 3899999987

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=87.87  E-value=0.21  Score=43.02  Aligned_cols=36  Identities=31%  Similarity=0.553  Sum_probs=29.9

Q ss_pred             CCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710           8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK   44 (473)
Q Consensus         8 ~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~   44 (473)
                      ..+|.+|||+|.+|.++|..++. ..+.++.+++..+
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~-~~G~~V~vlE~~~   67 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISK-NPNVQVAIIEQSV   67 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHT-STTSCEEEEESSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHH-ccCCeEEEEecCC
Confidence            46899999999999999999873 3578888888664

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=87.81  E-value=0.21  Score=42.19  Aligned_cols=34  Identities=24%  Similarity=0.237  Sum_probs=29.9

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ...|+|||+|-.|..+|..|++.|. .+++|+|.+
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gv-g~i~lvD~D   63 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGV-GNLTLLDFD   63 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTC-SEEEEECCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCC-CeEEEECCc
Confidence            4679999999999999999999942 389999987

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=87.81  E-value=0.21  Score=44.99  Aligned_cols=37  Identities=24%  Similarity=0.309  Sum_probs=31.8

Q ss_pred             CCCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710           6 SPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK   44 (473)
Q Consensus         6 ~~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~   44 (473)
                      ....||.+|||+|.+|+++|.+|+.  .+.+++++|+..
T Consensus         4 ~~~~~dvIVVGsG~aG~v~A~rLae--aG~~VlvLEaG~   40 (370)
T d3coxa1           4 DGDRVPALVIGSGYGGAVAALRLTQ--AGIPTQIVEMGR   40 (370)
T ss_dssp             TTCEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSC
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCC
Confidence            4567999999999999999999985  378999998753

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=87.68  E-value=0.39  Score=32.10  Aligned_cols=32  Identities=19%  Similarity=0.227  Sum_probs=29.7

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .|.|+|+|=-|...+....+.  |.+|.+++..+
T Consensus         3 ~vgIlG~GQLgrMl~~Aa~~L--G~~v~vldp~~   34 (78)
T d3etja2           3 QVCVLGNGQLGRMLRQAGEPL--GIAVWPVGLDA   34 (78)
T ss_dssp             EEEEEBCSHHHHHHHHHHGGG--TEEEEEECTTS
T ss_pred             EEEEEcCCHHHHHHHHHHHHc--CCEEEEEcCCC
Confidence            589999999999999999999  99999999763

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=87.65  E-value=0.25  Score=41.95  Aligned_cols=31  Identities=48%  Similarity=0.786  Sum_probs=25.9

Q ss_pred             CcEEEEccChHHHHHHHHHhhhCCCCcEEEEec
Q psy7710          10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEK   42 (473)
Q Consensus        10 ~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~   42 (473)
                      ||.+|||+|.+|..+|..++..  +.++.+++.
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~--G~~V~liE~   32 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARH--NAKVALVEK   32 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT--TCCEEEEES
T ss_pred             ceEEEECCCHHHHHHHHHHHHC--CCeEEEEec
Confidence            8999999999999999998854  566766653

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=87.63  E-value=0.28  Score=38.83  Aligned_cols=31  Identities=23%  Similarity=0.348  Sum_probs=26.7

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      .|+|+|+|..|+.++..+...  |. +|++.|..
T Consensus        31 ~VlV~G~G~iGl~a~~~ak~~--Ga~~Vi~~d~~   62 (174)
T d1e3ia2          31 TCAVFGLGCVGLSAIIGCKIA--GASRIIAIDIN   62 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCSEEEEECSC
T ss_pred             EEEEECCChHHHHHHHHHHHh--CCceeeeeccc
Confidence            599999999999999999888  76 67777875

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=87.53  E-value=0.29  Score=39.62  Aligned_cols=33  Identities=27%  Similarity=0.300  Sum_probs=26.8

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      -.|+|+|+|..|+.++..+...+ ..+|+++|..
T Consensus        27 ~tVlV~GaG~vGl~a~~~ak~~g-a~~Vi~~d~~   59 (195)
T d1kola2          27 STVYVAGAGPVGLAAAASARLLG-AAVVIVGDLN   59 (195)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESC
T ss_pred             CEEEEECcCHHHHHHHHHHHhhc-ccceeeeccc
Confidence            36999999999999998887772 3488888876

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=87.43  E-value=0.25  Score=43.71  Aligned_cols=36  Identities=25%  Similarity=0.410  Sum_probs=28.4

Q ss_pred             CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710           7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK   44 (473)
Q Consensus         7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~   44 (473)
                      ...||.+|||+|.+|..+|..++..  +.++.++++.+
T Consensus         3 ~~~~DVvVIG~G~AGl~AAl~aa~~--G~~V~liEK~~   38 (336)
T d2bs2a2           3 VQYCDSLVIGGGLAGLRAAVATQQK--GLSTIVLSLIP   38 (336)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHTT--TCCEEEECSSC
T ss_pred             ceecCEEEECcCHHHHHHHHHHHHC--CCCEEEEecCC
Confidence            3458999999999999999988843  56777776553

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=87.25  E-value=0.33  Score=37.80  Aligned_cols=34  Identities=24%  Similarity=0.337  Sum_probs=29.6

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCC-eEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKM-KICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~-~V~viE~~   91 (473)
                      ....|+|||+|-+|..+|.+|...  |. +++|+-|.
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~--g~~~i~v~nRt   57 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDR--GVRAVLVANRT   57 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHH--CCSEEEEECSS
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhc--CCcEEEEEcCc
Confidence            456799999999999999999999  76 68888875

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.14  E-value=0.32  Score=39.92  Aligned_cols=31  Identities=29%  Similarity=0.276  Sum_probs=24.0

Q ss_pred             CCcEEEEccChHHHHHHHHHhhhCCCCcEEEEe
Q psy7710           9 LYDMVVVGGGIVGVATARELKLKYPKMKTCLVE   41 (473)
Q Consensus         9 ~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~   41 (473)
                      .||.+|||+|.+|..+|..++..  +.++.+++
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~--G~kV~vIE   33 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQL--GQKVTIVE   33 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHT--TCCEEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHC--CCEEEEEe
Confidence            59999999999999999888743  34454444

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=86.97  E-value=0.28  Score=42.55  Aligned_cols=33  Identities=18%  Similarity=0.226  Sum_probs=30.0

Q ss_pred             cccEEEEcC-ChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          57 LYDVVVVGG-GIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGa-Gi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      +.+|+|+|| |..|..++.+|.++  |.+|+++.|.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~--G~~V~~~~R~   36 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISL--GHPTYVLFRP   36 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHT--TCCEEEECCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhC--CCEEEEEECC
Confidence            456999996 99999999999999  8999999886

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=86.96  E-value=0.33  Score=38.53  Aligned_cols=32  Identities=28%  Similarity=0.279  Sum_probs=28.3

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCC-CeEEEEeccC
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPK-MKICLVEKEK   92 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G-~~V~viE~~~   92 (473)
                      -|+|+|+|..|+.+...+...  | .+|+++|..+
T Consensus        32 tVlI~G~GgvGl~ai~~ak~~--G~~~Vi~vd~~~   64 (176)
T d1d1ta2          32 TCVVFGLGGVGLSVIMGCKSA--GASRIIGIDLNK   64 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCG
T ss_pred             EEEEECCCchhHHHHHHHHHc--CCceEEEecCcH
Confidence            399999999999999999888  6 6899999873

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=86.71  E-value=0.27  Score=42.89  Aligned_cols=51  Identities=4%  Similarity=0.044  Sum_probs=37.5

Q ss_pred             HHHHHHHcCcEEEeCceEEEEEEcCC-------eE-E--EE-cCCC--cEEEcCEEEEcCCcCh
Q psy7710         210 MGEEFCELGGEIRLNQQVESFKENPE-------SV-T--IS-TKQG--DHLESSYALVCAGLQA  260 (473)
Q Consensus       210 l~~~~~~~Gv~i~~~~~V~~i~~~~~-------~v-~--v~-~~~g--~~i~ad~VV~aaG~~s  260 (473)
                      +.+.+++.+++++.++++.++..+++       ++ .  +. ..++  ..+.++.||+|+|.+.
T Consensus       144 ~~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~  207 (305)
T d1chua2         144 VSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGAS  207 (305)
T ss_dssp             HHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCG
T ss_pred             HHHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccc
Confidence            45556678999999999999997753       22 2  22 2344  3578999999999985

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=86.70  E-value=0.31  Score=38.72  Aligned_cols=33  Identities=24%  Similarity=0.323  Sum_probs=28.7

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      +..+|+|+|+|-++-++++.|.+.  | +|.|+.|.
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~--~-~i~I~nR~   49 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKD--N-NIIIANRT   49 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSS--S-EEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHccc--c-ceeeehhh
Confidence            345799999999999999999876  6 89999886

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.65  E-value=0.31  Score=38.14  Aligned_cols=31  Identities=19%  Similarity=0.182  Sum_probs=27.0

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .|+|+|+|.+|+.++..+...  |.+|++++..
T Consensus        30 ~vlv~G~G~iG~~a~~~a~~~--g~~v~~~~~~   60 (168)
T d1rjwa2          30 WVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIG   60 (168)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT--TCEEEEECSC
T ss_pred             EEEEeecccchhhhhHHHhcC--CCeEeccCCC
Confidence            499999999999988777777  8899999876

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=86.54  E-value=0.28  Score=43.18  Aligned_cols=37  Identities=32%  Similarity=0.393  Sum_probs=30.2

Q ss_pred             CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecccc
Q psy7710           7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKE   45 (473)
Q Consensus         7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~   45 (473)
                      ..++|++|||+|++|+.+|..++..  +.++.++++.+.
T Consensus        21 ~et~DVvVIG~G~aGl~aA~~la~~--G~~V~llEk~~~   57 (322)
T d1d4ca2          21 KETTDVVIIGSGGAGLAAAVSARDA--GAKVILLEKEPI   57 (322)
T ss_dssp             CEECSEEEECSSHHHHHHHHHHHTT--TCCEEEECSSSS
T ss_pred             CCcceEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCCC
Confidence            3458999999999999999999854  678888886653

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.38  E-value=0.42  Score=38.82  Aligned_cols=33  Identities=12%  Similarity=0.334  Sum_probs=29.8

Q ss_pred             ccEEEEcC-ChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGG-GIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGa-Gi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      .+|+|+|| |..|..++.+|.++  |.+|+++.|++
T Consensus         4 kkIlV~GatG~iG~~v~~~Ll~~--g~~V~~~~R~~   37 (205)
T d1hdoa_           4 KKIAIFGATGQTGLTTLAQAVQA--GYEVTVLVRDS   37 (205)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCG
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC--cCEEEEEEcCh
Confidence            46999995 99999999999999  89999999863

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=86.36  E-value=0.3  Score=42.04  Aligned_cols=34  Identities=18%  Similarity=0.248  Sum_probs=30.8

Q ss_pred             cccEEEEcC-ChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGG-GIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGa-Gi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      +.+|+|+|| |..|..++..|.++  |.+|+++.|.+
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~--G~~V~~l~R~~   37 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDL--GHPTFLLVRES   37 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHT--TCCEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHC--CCeEEEEECCC
Confidence            467999997 99999999999999  89999999873

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=86.34  E-value=0.2  Score=44.43  Aligned_cols=37  Identities=24%  Similarity=0.338  Sum_probs=29.5

Q ss_pred             CCCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710           6 SPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK   44 (473)
Q Consensus         6 ~~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~   44 (473)
                      +.+.||.||||+|++|..+|..++..  +.++.++++.+
T Consensus         4 ~~~~~DVlVVG~G~AGl~AAl~aa~~--G~~V~lleK~~   40 (330)
T d1neka2           4 PVREFDAVVIGAGGAGMRAALQISQS--GQTCALLSKVF   40 (330)
T ss_dssp             CEEEESCEEECCSHHHHHHHHHHHHT--TCCCEEECSSC
T ss_pred             CcccCCEEEECcCHHHHHHHHHHHHc--CCeEEEEeCCC
Confidence            35679999999999999999998855  34676776654

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=86.24  E-value=0.61  Score=33.90  Aligned_cols=34  Identities=21%  Similarity=0.312  Sum_probs=29.3

Q ss_pred             cccEEEEcCCh-----------HHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGGGI-----------VGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi-----------~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ...|+|||+|+           ++..++..|.+.  |.+++++..++
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~--g~~~IliN~NP   48 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALRED--GYETIMVNCNP   48 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHT--TCEEEEECCCT
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhc--CCeEEEEecCh
Confidence            45799999995           678888999999  99999999875

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=86.09  E-value=0.42  Score=38.38  Aligned_cols=34  Identities=24%  Similarity=0.265  Sum_probs=30.1

Q ss_pred             CcccEEEEc-CChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          56 ALYDVVVVG-GGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIG-aGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      +...|+|.| +|-+|..+|..|+++  |.+|+++.|.
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~--G~~V~~~~r~   56 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGE--GAEVVLCGRK   56 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhh--ccchhhcccc
Confidence            345688998 589999999999999  9999999997

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=85.78  E-value=0.24  Score=41.45  Aligned_cols=36  Identities=22%  Similarity=0.425  Sum_probs=26.1

Q ss_pred             CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecc
Q psy7710           7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKE   43 (473)
Q Consensus         7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~   43 (473)
                      ++.||.+|||+|.+|..+|..++... ..++.+.+..
T Consensus         1 ~k~YDvvVIG~GpAG~~aAi~aa~~g-~k~V~vie~~   36 (240)
T d1feca1           1 SRAYDLVVIGAGSGGLEAGWNAASLH-KKRVAVIDLQ   36 (240)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHHH-CCCEEEEESC
T ss_pred             CCccCEEEECCCHHHHHHHHHHHHcC-CCEEEEEEEe
Confidence            36899999999999999998777432 2245555544

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=85.71  E-value=0.49  Score=37.62  Aligned_cols=36  Identities=17%  Similarity=0.161  Sum_probs=30.1

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ...+|+|+|+|-++-++++.|.+.+ ..+++|+.|..
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g-~~~i~i~nR~~   52 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEG-LKEIKLFNRRD   52 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcC-CceEeeeccch
Confidence            3467999999999999999999984 24888998863

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=85.60  E-value=0.29  Score=42.98  Aligned_cols=38  Identities=24%  Similarity=0.260  Sum_probs=31.0

Q ss_pred             CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccccc
Q psy7710           7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEF   46 (473)
Q Consensus         7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~   46 (473)
                      ..++|.+|||+|++|+++|..++..  +.++.++++.+..
T Consensus        17 ~e~~DVvVIGaG~aGl~AA~~aa~~--G~~V~vlEK~~~~   54 (317)
T d1qo8a2          17 SETTQVLVVGAGSAGFNASLAAKKA--GANVILVDKAPFS   54 (317)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHH--TCCEEEECSSSSS
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCCCC
Confidence            4568999999999999999998865  5678888776543

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=85.52  E-value=0.35  Score=41.64  Aligned_cols=52  Identities=13%  Similarity=0.238  Sum_probs=38.0

Q ss_pred             HHHcCcEEEeCceEEEEEEcCCeEEEEcC-CC--cEEEcCEEEEcCCcC-hHHHHH
Q psy7710         214 FCELGGEIRLNQQVESFKENPESVTISTK-QG--DHLESSYALVCAGLQ-ADEMAL  265 (473)
Q Consensus       214 ~~~~Gv~i~~~~~V~~i~~~~~~v~v~~~-~g--~~i~ad~VV~aaG~~-s~~l~~  265 (473)
                      +++.|++|+++++|++|..+++++.|++. ++  .+++||.||+|++++ +..|++
T Consensus       229 ~~~~g~~i~~~~~V~~I~~~~~~~~v~~~~~~~~~~~~ad~VV~a~p~~~~~~Ll~  284 (347)
T d2ivda1         229 AASLGDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQVVLAAPAHATAKLLR  284 (347)
T ss_dssp             HHHHGGGEESSEEEEEEECC--CCEEEEEETTEEEEEECSEEEECSCHHHHHHHHT
T ss_pred             HHHhhcccccCCEEEEEEEeCCeEEEEEEcCCeEEEEECCEEEECCCHHHHHHhcc
Confidence            34458999999999999988776665432 22  468999999999987 556654

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=85.48  E-value=0.3  Score=41.68  Aligned_cols=32  Identities=16%  Similarity=0.415  Sum_probs=29.7

Q ss_pred             ccEEEEcC-ChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          58 YDVVVVGG-GIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        58 ~dVvIIGa-Gi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      ++|+|.|| |..|..++.+|.++  |.+|+.+++.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~--g~~Vi~~~r~   34 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGK--NVEVIPTDVQ   34 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTS--SEEEEEECTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC--CCEEEEeech
Confidence            56999997 99999999999999  9999999986

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=85.41  E-value=0.48  Score=40.10  Aligned_cols=36  Identities=25%  Similarity=0.458  Sum_probs=27.8

Q ss_pred             CCCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecc
Q psy7710           6 SPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKE   43 (473)
Q Consensus         6 ~~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~   43 (473)
                      .++.||.+|||+|.+|..+|..++..  +.++.+++..
T Consensus        39 ~~k~yDvvVIGgG~aG~~aA~~~a~~--G~kv~vve~~   74 (261)
T d1mo9a1          39 DPREYDAIFIGGGAAGRFGSAYLRAM--GGRQLIVDRW   74 (261)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHHC--CCeEEEEecc
Confidence            35789999999999999999888854  4456566543

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.39  E-value=0.43  Score=41.02  Aligned_cols=34  Identities=15%  Similarity=0.366  Sum_probs=28.6

Q ss_pred             CCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710           9 LYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK   44 (473)
Q Consensus         9 ~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~   44 (473)
                      .+|++|||+|++|.++|..|+..  +..+.++++.+
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~--G~~v~vlE~~~   35 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKA--GIDNVILERQT   35 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHH--TCCEEEECSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC--CCCEEEEeCCC
Confidence            45899999999999999999865  56787887765

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.00  E-value=0.45  Score=36.91  Aligned_cols=33  Identities=27%  Similarity=0.285  Sum_probs=30.7

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ..|+|||-|-.|-.+|..|+..  |.+|++.|..+
T Consensus        25 k~v~V~GyG~iG~g~A~~~rg~--G~~V~v~e~dp   57 (163)
T d1li4a1          25 KVAVVAGYGDVGKGCAQALRGF--GARVIITEIDP   57 (163)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCH
T ss_pred             CEEEEeccccccHHHHHHHHhC--CCeeEeeeccc
Confidence            4699999999999999999999  99999999874

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.87  E-value=0.45  Score=42.25  Aligned_cols=37  Identities=35%  Similarity=0.545  Sum_probs=28.8

Q ss_pred             CCCcEEEEccChHHHHHHHHHhh--hCCCCcEEEEeccc
Q psy7710           8 TLYDMVVVGGGIVGVATARELKL--KYPKMKTCLVEKEK   44 (473)
Q Consensus         8 ~~~~~~vvg~g~ag~~~a~~l~~--~~~~~~~~~~~~~~   44 (473)
                      ..+|.||||+|++|.++|..++.  ..++.++.++++..
T Consensus        20 ~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~   58 (356)
T d1jnra2          20 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA   58 (356)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred             EecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCC
Confidence            45899999999999999887763  33567787777653

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=84.71  E-value=0.23  Score=37.01  Aligned_cols=36  Identities=17%  Similarity=0.281  Sum_probs=26.3

Q ss_pred             CcccEEEEcCChHHHHHHHHHHhcCCCCeE-EEEeccC
Q psy7710          56 ALYDVVVVGGGIVGVATARELKLNYPKMKI-CLVEKEK   92 (473)
Q Consensus        56 ~~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V-~viE~~~   92 (473)
                      +++.|+|+|||-+|.+++.++.... ++++ ..+|-++
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~-~~~iv~fiDdd~   38 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDP   38 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCT
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcC-CcEEEEEEeCch
Confidence            4578999999999999988775442 5554 4566553

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=84.53  E-value=0.46  Score=41.29  Aligned_cols=38  Identities=26%  Similarity=0.402  Sum_probs=29.4

Q ss_pred             CCCCCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEecc
Q psy7710           4 SQSPTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKE   43 (473)
Q Consensus         4 ~~~~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~   43 (473)
                      ++.+..+|.+|||+|.+|.++|..|...  +..+.++++.
T Consensus         2 ~~p~~~~dV~IIGAG~sGl~~a~~L~~~--G~~v~i~Ek~   39 (298)
T d1w4xa1           2 RQPPEEVDVLVVGAGFSGLYALYRLREL--GRSVHVIETA   39 (298)
T ss_dssp             CCCCSEEEEEEECCSHHHHHHHHHHHHT--TCCEEEECSS
T ss_pred             CCCCCCCCEEEECccHHHHHHHHHHHhC--CCCEEEEEcC
Confidence            4556778999999999999999999854  4456566554

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=84.33  E-value=0.56  Score=39.44  Aligned_cols=36  Identities=31%  Similarity=0.429  Sum_probs=29.6

Q ss_pred             CCCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710           7 PTLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK   44 (473)
Q Consensus         7 ~~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~   44 (473)
                      ++.-+.+|||+|++|.++|..|+..  +..+.++++.+
T Consensus         2 ~~~~kV~IiGaG~aGl~~A~~L~~~--G~~v~v~Er~~   37 (265)
T d2voua1           2 PTTDRIAVVGGSISGLTAALMLRDA--GVDVDVYERSP   37 (265)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHC--CCCEEEEeCCC
Confidence            4566899999999999999999854  67888887654

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.23  E-value=0.45  Score=41.54  Aligned_cols=37  Identities=27%  Similarity=0.623  Sum_probs=31.7

Q ss_pred             CCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710           8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK   44 (473)
Q Consensus         8 ~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~   44 (473)
                      +.+|.+|||+|.+|.++|..++...++.++.++++.+
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~   85 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV   85 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            4589999999999999999999767788888887654

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=83.15  E-value=0.65  Score=36.46  Aligned_cols=32  Identities=25%  Similarity=0.254  Sum_probs=27.0

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      .|+|+|+|..|+.++..++..+ +.+|+++++.
T Consensus        31 ~VlI~G~Gg~g~~~~~~~~~~g-~~~Vi~~~~~   62 (175)
T d1cdoa2          31 TCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLN   62 (175)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT-CSEEEEECSC
T ss_pred             EEEEEecCCccchHHHHHHHHh-hchheeecch
Confidence            3899999999999999998884 4578888876

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=83.05  E-value=0.75  Score=32.12  Aligned_cols=35  Identities=17%  Similarity=0.152  Sum_probs=30.5

Q ss_pred             CCcccEEEEcCChHHHHH-HHHHHhcCCCCeEEEEecc
Q psy7710          55 PALYDVVVVGGGIVGVAT-ARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        55 ~~~~dVvIIGaGi~Gl~~-A~~L~~~~~G~~V~viE~~   91 (473)
                      .....|-+||-|-+|+++ |..|.++  |.+|+--|..
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~--G~~VsGSD~~   41 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNE--GYQISGSDIA   41 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHH--TCEEEEEESC
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhC--CCEEEEEeCC
Confidence            355679999999999888 9999999  9999999876

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.96  E-value=0.58  Score=41.15  Aligned_cols=37  Identities=27%  Similarity=0.504  Sum_probs=30.3

Q ss_pred             CCCcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccccc
Q psy7710           8 TLYDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEF   46 (473)
Q Consensus         8 ~~~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~   46 (473)
                      +..+.+|||+|++|.++|..|...  +.++.++|+.+..
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~--G~~V~VlEa~~r~   40 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSF--GMDVTLLEARDRV   40 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHT--TCEEEEECSSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhC--CCCEEEEeCCCCC
Confidence            456799999999999999999854  5678888876554

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.80  E-value=0.65  Score=41.36  Aligned_cols=34  Identities=21%  Similarity=0.336  Sum_probs=30.6

Q ss_pred             CcccEEEEc-CChHHHHHHHHHHhcCCCCeEEEEecc
Q psy7710          56 ALYDVVVVG-GGIVGVATARELKLNYPKMKICLVEKE   91 (473)
Q Consensus        56 ~~~dVvIIG-aGi~Gl~~A~~L~~~~~G~~V~viE~~   91 (473)
                      +.++|+|.| +|..|..++.+|.++  |.+|+++++.
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~--g~~V~~~d~~   48 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHE--GHYVIASDWK   48 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC--cCEEEEEeCC
Confidence            456799999 699999999999999  8999999875

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=82.79  E-value=0.51  Score=37.18  Aligned_cols=32  Identities=25%  Similarity=0.279  Sum_probs=25.1

Q ss_pred             ccEEEEcCChHHHHHHHHHHhcCCCCeE-EEEecc
Q psy7710          58 YDVVVVGGGIVGVATARELKLNYPKMKI-CLVEKE   91 (473)
Q Consensus        58 ~dVvIIGaGi~Gl~~A~~L~~~~~G~~V-~viE~~   91 (473)
                      -.|+|+|+|..|+.++..+...  |.++ ++.+..
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~--g~~~v~~~~~~   62 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVC--GASIIIAVDIV   62 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHH--TCSEEEEEESC
T ss_pred             CEEEEeCCCHHHhhhhhccccc--ccceeeeeccH
Confidence            4599999999999999888877  6655 555654

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.76  E-value=0.55  Score=41.41  Aligned_cols=34  Identities=38%  Similarity=0.630  Sum_probs=28.5

Q ss_pred             cEEEEccChHHHHHHHHHhhhCCCCcEEEEeccccc
Q psy7710          11 DMVVVGGGIVGVATARELKLKYPKMKTCLVEKEKEF   46 (473)
Q Consensus        11 ~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~~~   46 (473)
                      |.+|||+|++|.++|..|...  +.++.++++....
T Consensus         1 DViVIGaG~aGL~aA~~L~~~--G~~V~VlE~~~~~   34 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDS--GLNVVVLEARDRV   34 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHT--TCCEEEEESSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhC--CCCEEEEecCCCC
Confidence            789999999999999999854  5678888876544

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=82.73  E-value=0.66  Score=40.06  Aligned_cols=34  Identities=26%  Similarity=0.399  Sum_probs=26.7

Q ss_pred             CcEEEEccChHHHHHHHHHhhhCCCCcEEEEeccc
Q psy7710          10 YDMVVVGGGIVGVATARELKLKYPKMKTCLVEKEK   44 (473)
Q Consensus        10 ~~~~vvg~g~ag~~~a~~l~~~~~~~~~~~~~~~~   44 (473)
                      .|.+|||+|++|+++|..|+... ..++.++++..
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G-~~~V~liE~~~   35 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRG-WNNITVLDQGP   35 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTT-CCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHcC-CCcEEEEeCCC
Confidence            48999999999999999998542 23577777653

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=82.44  E-value=0.64  Score=36.60  Aligned_cols=31  Identities=26%  Similarity=0.197  Sum_probs=27.1

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCC-CeEEEEecc
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPK-MKICLVEKE   91 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G-~~V~viE~~   91 (473)
                      .|+|+|+|..|+.++..+...  | .+|+++|..
T Consensus        30 ~VlV~GaGgvGl~a~~~ak~~--G~~~Vi~~d~~   61 (174)
T d1p0fa2          30 TCAVFGLGGVGFSAIVGCKAA--GASRIIGVGTH   61 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH--TCSEEEEECSC
T ss_pred             EEEEECCCchhHHHHHHHHHc--CCceeeccCCh
Confidence            499999999999999999888  6 478888876

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.39  E-value=0.63  Score=39.41  Aligned_cols=34  Identities=32%  Similarity=0.542  Sum_probs=26.8

Q ss_pred             CcEEEEccChHHHHHHHHHhhhCCCC-cEEEEecccc
Q psy7710          10 YDMVVVGGGIVGVATARELKLKYPKM-KTCLVEKEKE   45 (473)
Q Consensus        10 ~~~~vvg~g~ag~~~a~~l~~~~~~~-~~~~~~~~~~   45 (473)
                      +|.+|||+|++|.++|..|+..  +. .+.++++.+.
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~--Gi~~V~V~Er~~~   36 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQA--GIGKVTLLESSSE   36 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCSEEEEEESSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhC--CCCeEEEEeCCCC
Confidence            5899999999999999999854  43 5667776543

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=82.23  E-value=0.63  Score=35.88  Aligned_cols=34  Identities=26%  Similarity=0.239  Sum_probs=31.5

Q ss_pred             cccEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          57 LYDVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        57 ~~dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      -..++|+|=|-.|-.+|.+|+..  |.+|+|.|.+|
T Consensus        23 Gk~vvV~GYG~vGrG~A~~~rg~--Ga~V~V~E~DP   56 (163)
T d1v8ba1          23 GKIVVICGYGDVGKGCASSMKGL--GARVYITEIDP   56 (163)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHH--TCEEEEECSCH
T ss_pred             CCEEEEecccccchhHHHHHHhC--CCEEEEEecCc
Confidence            35799999999999999999999  99999999984

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=81.41  E-value=0.83  Score=35.88  Aligned_cols=33  Identities=27%  Similarity=0.223  Sum_probs=27.9

Q ss_pred             cEEEEcCChHHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          59 DVVVVGGGIVGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        59 dVvIIGaGi~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      -|+|+|+|..|++++..++..+ +.+|++++.++
T Consensus        31 tVlV~GaGG~G~~~~~~~~~~g-~~~Vi~~~~~~   63 (176)
T d2jhfa2          31 TCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINK   63 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCG
T ss_pred             EEEEECCCCcHHHHHHHHHHcC-CceEEeecCcH
Confidence            3999999999999999999883 36888888763

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=80.96  E-value=1.3  Score=32.54  Aligned_cols=35  Identities=14%  Similarity=0.392  Sum_probs=29.8

Q ss_pred             CcccEEEEcCCh-----------HHHHHHHHHHhcCCCCeEEEEeccC
Q psy7710          56 ALYDVVVVGGGI-----------VGVATARELKLNYPKMKICLVEKEK   92 (473)
Q Consensus        56 ~~~dVvIIGaGi-----------~Gl~~A~~L~~~~~G~~V~viE~~~   92 (473)
                      ...+|+|||+|+           ++..++..|.+.  |.+++++..++
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~--g~~~iliN~NP   51 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREE--GYRVINVNSNP   51 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHH--TCEEEEECSCT
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHc--CCeEEEecCch
Confidence            346799999986           578888999999  99999999875

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=80.83  E-value=0.68  Score=41.28  Aligned_cols=57  Identities=18%  Similarity=0.335  Sum_probs=41.0

Q ss_pred             HHHHHHcC-cEEEeCceEEEEEEcCCe---EEEE--cCCC-----cEEEcCEEEEcCCcC-hHHHHHhc
Q psy7710         211 GEEFCELG-GEIRLNQQVESFKENPES---VTIS--TKQG-----DHLESSYALVCAGLQ-ADEMALKS  267 (473)
Q Consensus       211 ~~~~~~~G-v~i~~~~~V~~i~~~~~~---v~v~--~~~g-----~~i~ad~VV~aaG~~-s~~l~~~~  267 (473)
                      ...+++.| ++|+.++.|++|..++++   +.|+  ..++     ++++||.||+|+|+. |+.|+..+
T Consensus       225 l~~a~~~gn~~i~~~t~V~~I~~~~~g~~~v~v~~~~~~~~~~~~~~i~Ak~VVLaAGai~Tp~LLl~S  293 (367)
T d1n4wa1         225 LAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLVRA  293 (367)
T ss_dssp             HHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHHHHHHHHH
T ss_pred             hHHHHhCCCeEEECCCEEEEEEEcCCCCEEEEEEEECCCCcceeEEEEecCEEEEecchhcCHHHHHhC
Confidence            34455555 899999999999987542   3333  2222     358899999999997 88887655

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.80  E-value=0.48  Score=36.54  Aligned_cols=35  Identities=14%  Similarity=0.201  Sum_probs=25.5

Q ss_pred             cccEEEEcC-ChHHHHHHHHHHhcCC-----CCeEEEEecc
Q psy7710          57 LYDVVVVGG-GIVGVATARELKLNYP-----KMKICLVEKE   91 (473)
Q Consensus        57 ~~dVvIIGa-Gi~Gl~~A~~L~~~~~-----G~~V~viE~~   91 (473)
                      ..+|.|||| |..|.++|+.|+....     -....++|..
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~   43 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDIT   43 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCG
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCc
Confidence            468999996 9999999999986410     1246666654

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=80.55  E-value=0.48  Score=36.54  Aligned_cols=24  Identities=25%  Similarity=0.326  Sum_probs=21.1

Q ss_pred             CcccEEEEcC-ChHHHHHHHHHHhc
Q psy7710          56 ALYDVVVVGG-GIVGVATARELKLN   79 (473)
Q Consensus        56 ~~~dVvIIGa-Gi~Gl~~A~~L~~~   79 (473)
                      ...+|.|||| |..|.++|+.|+..
T Consensus         3 ~p~KV~IiGA~G~VG~~~a~~l~~~   27 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYSLLFRIAAG   27 (154)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhc
Confidence            3458999997 99999999999976