Psyllid ID: psy7739

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
MLKTLLEFGPKTSKTCSRNMFTIIDRYYQEQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKTPW
Secondary Structure (PSIPRED)
cHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mlktllefgpktsktcsRNMFTIIDRYYQEQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNqelektpw
Flexible Loop (DISEMBL)
mlktllefgpktsktcsrnMFTIIDRYYQEQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQEeldkkkelkyrqyqeeqrvtqgeidrmtkqdekyrEEKQNKMMKLRQDMEESLKSREQMrqheklqnqelektpw
Low Complexity Region (SEG)
MLKTLLEFGPKTSKTCSRNMFTIIDRYYQEQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEKTPW
Disordered region (IsUnstruct)
**************TCSRNMFTIIDRYYQEQMY*************************************************************************************************************
Disordered Region (DISOPRED)
**KTL**FGPKTSKTCSRNMFTIID*********************************************************************************************************************
Disordered Region (DISEMBL)
MLKTLLEFGPKTSKTCSRNMFTIIDRYYQEQMYSATQR*************RQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTK**********************************************
Disordered Region (DISPRO)
*LKTLLEFGPKTSKTCSRNMFTIIDRYYQEQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVT****DRMTKQDEKYREEKQN****LRQDMEES***********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLKTLLEFGPKTSKTCSRNMFTIIDRYYQEQMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDEKYxxxxxxxxxxxxxxxxxxxxxxxxxxxxEKLQNQELEKTPW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
405970011	6274	Myosin-10 [Crassostrea gigas]	0.718	0.016	0.261	0.0002

>gi|405970011|gb|EKC34950.1| Myosin-10 [Crassostrea gigas]

 Score = 50.8 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 60/111 (54%), Gaps = 9/111 (8%)

Query: 28   YQEQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVT 87
            Y +Q+   T R+  + + K + L ++K +  K  +Q+M EEL+K +         +Q  +
Sbjct: 5628 YAKQLEKDTTREKEQQDRKLEQLNKRKEDMVKEKKQKMNEELEKIR---------QQGAS 5678

Query: 88   QGEIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELE 138
            + E  R+ +Q E+  +   NKM   +  M+ +L+ R + ++ E+L+N++ E
Sbjct: 5679 EDEQKRLIEQHERDLQNILNKMDADKMRMQSNLQERLKKKKDERLKNKQEE 5729

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
UNIPROTKB|P18174	285	IVL "Involucrin" [Canis lupus	0.795	0.396	0.327	1e-10
UNIPROTKB|E2R7A4	285	IVL "Involucrin" [Canis lupus	0.795	0.396	0.319	3e-10
GENEDB_PFALCIPARUM|PF13_0198	3130	PF13_0198 "reticulocyte bindin	0.774	0.035	0.379	1.2e-09
UNIPROTKB|Q8IDX6	3130	PF13_0198 "Reticulocyte-bindin	0.774	0.035	0.379	1.2e-09
DICTYBASE|DDB_G0281095	1097	DDB_G0281095 "SAP DNA-binding	0.781	0.101	0.243	6.7e-09
ZFIN|ZDB-GENE-050208-317	1422	tnks1bp1 "tankyrase 1 binding	0.697	0.069	0.310	1.2e-08
DICTYBASE|DDB_G0295683	1589	DDB_G0295683 "cofilin/tropomyo	0.788	0.070	0.275	1.7e-08
UNIPROTKB|J9P4T1	733	ZNF853 "Uncharacterized protei	0.788	0.152	0.245	1.8e-08
DICTYBASE|DDB_G0270410	2104	DDB_G0270410 "SET domain-conta	0.788	0.053	0.245	1.8e-08
DICTYBASE|DDB_G0276103	1503	enlA "enlazin" [Dictyostelium	0.746	0.070	0.321	3.3e-08

UNIPROTKB|P18174 IVL "Involucrin" [Canis lupus familiaris (taxid:9615)]

 Score = 153 (58.9 bits), Expect = 1.0e-10, P = 1.0e-10
 Identities = 39/119 (32%), Positives = 68/119 (57%)

Query:    28 YQEQMYSATQR----QMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEE 83
             +QEQ  S  Q+    Q LE + ++Q  Q QK+   + LEQQ +++  ++KEL   Q Q++
Sbjct:   103 HQEQQESQDQKLYPEQCLEQQQEQQESQDQKLYPEQCLEQQQEQQESQEKELHLEQEQQK 162

Query:    84 QRVTQGEIDRMTKQDEKYREEKQNKMMKLRQ-DMEESLKSREQMRQHEKLQNQELEKTP 141
             + + Q E  +  +Q EK++E K N   +L Q   +   + +EQ+ Q +KL +Q L++ P
Sbjct:   163 EELQQQEQQQGKEQCEKHQEAK-NLEQQLEQIGAQRKQQQKEQLEQEKKLVDQHLDQEP 220

GO:0005737 "cytoplasm" evidence=IEA

GO:0031424 "keratinization" evidence=IEA

GO:0001533 "cornified envelope" evidence=IEA

UNIPROTKB|E2R7A4 IVL "Involucrin" [Canis lupus familiaris (taxid:9615)]

 Score = 149 (57.5 bits), Expect = 3.0e-10, P = 3.0e-10
 Identities = 38/119 (31%), Positives = 68/119 (57%)

Query:    28 YQEQMYSATQR----QMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEE 83
             +QEQ  S  Q+    + LE + ++Q  Q QK+   + LEQQ +++  ++KEL   Q Q++
Sbjct:   103 HQEQQESQDQKLYPEKCLEQQQEQQESQDQKLYPEQCLEQQQEQQESQEKELHLEQEQQK 162

Query:    84 QRVTQGEIDRMTKQDEKYREEKQNKMMKLRQ-DMEESLKSREQMRQHEKLQNQELEKTP 141
             + + Q E  +  +Q EK++E K N   +L Q   +   + +EQ+ Q +KL +Q L++ P
Sbjct:   163 EELQQQEQQQGKEQCEKHQEAK-NLEQQLEQIGAQRKQQQKEQLEQEKKLVDQHLDQEP 220

GO:0005737 "cytoplasm" evidence=IEA

GO:0031424 "keratinization" evidence=IEA

GO:0001533 "cornified envelope" evidence=IEA

GENEDB_PFALCIPARUM|PF13_0198 PF13_0198 "reticulocyte binding protein 2 homolog a" [Plasmodium falciparum (taxid:5833)]

 Score = 158 (60.7 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 47/124 (37%), Positives = 75/124 (60%)

Query:    25 DRYYQEQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQE-- 82
             +R  Q+Q   A +RQ  E   KE+ L+RQ+ E    LE++ QE+L K++ELK RQ QE  
Sbjct:  2728 ERQEQQQKEEALKRQEQERLQKEEELKRQEQE---RLEREKQEQLQKEEELK-RQEQERL 2783

Query:    83 --EQRVTQGEIDRMTKQDEKYREEKQNKMMKLRQDM---EESLKSREQMR--QHEKLQNQ 135
               E+ + + E +R+ K++E  R+E Q ++ + +Q+    EE LK +EQ R  + E L+ Q
Sbjct:  2784 QKEEALKRQEQERLQKEEELKRQE-QERLEREKQEQLQKEEELKRQEQERLQKEEALKRQ 2842

Query:   136 ELEK 139
             E E+
Sbjct:  2843 EQER 2846

GO:0030260 "entry into host cell" evidence=ISS

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q8IDX6 PF13_0198 "Reticulocyte-binding protein 2 homolog a" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 158 (60.7 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 47/124 (37%), Positives = 75/124 (60%)

Query:    25 DRYYQEQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQE-- 82
             +R  Q+Q   A +RQ  E   KE+ L+RQ+ E    LE++ QE+L K++ELK RQ QE  
Sbjct:  2728 ERQEQQQKEEALKRQEQERLQKEEELKRQEQE---RLEREKQEQLQKEEELK-RQEQERL 2783

Query:    83 --EQRVTQGEIDRMTKQDEKYREEKQNKMMKLRQDM---EESLKSREQMR--QHEKLQNQ 135
               E+ + + E +R+ K++E  R+E Q ++ + +Q+    EE LK +EQ R  + E L+ Q
Sbjct:  2784 QKEEALKRQEQERLQKEEELKRQE-QERLEREKQEQLQKEEELKRQEQERLQKEEALKRQ 2842

Query:   136 ELEK 139
             E E+
Sbjct:  2843 EQER 2846

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=ISS

GO:0016337 "cell-cell adhesion" evidence=ISS

GO:0030260 "entry into host cell" evidence=ISS

DICTYBASE|DDB_G0281095 DDB_G0281095 "SAP DNA-binding domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 146 (56.5 bits), Expect = 6.7e-09, P = 6.7e-09
 Identities = 27/111 (24%), Positives = 66/111 (59%)

Query:    29 QEQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQ 88
             Q+Q     Q+Q  + + +EQ  Q+Q+ E ++  +QQ Q++  +++E + +Q Q++Q   Q
Sbjct:   344 QQQQQQQQQQQQEQQKQQEQKQQQQEQEQQQQQQQQQQQQQQQQQEQQQQQEQQQQEQQQ 403

Query:    89 GEIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEK 139
              +  +  +Q E+ ++E+Q +  + +Q  E+  + ++Q +Q ++ Q Q+ ++
Sbjct:   404 EQEQQQQQQQEEQQQEQQQQQQQQQQQQEQQEQEQQQQQQQQQQQQQQQQQ 454

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003677 "DNA binding" evidence=IEA

ZFIN|ZDB-GENE-050208-317 tnks1bp1 "tankyrase 1 binding protein 1" [Danio rerio (taxid:7955)]

 Score = 145 (56.1 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 32/103 (31%), Positives = 67/103 (65%)

Query:    37 QRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTK 96
             +R++ E   K Q ++RQ+ E R+  E++ +E L K++E++ R+  EE+R+ Q E  R+ +
Sbjct:   443 ERELEEKRRKIQEMERQRKEERQRQEREKEERLKKEREMEERKRIEEERLRQEE--RLRQ 500

Query:    97 QDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEK 139
             + EK R +K+ +M + RQ ++E  + +E+ R+ +  + +E+E+
Sbjct:   501 EREKERVKKEKEMEEERQRVQELERQKEEERRRK--EEEEMER 541

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0295683 DDB_G0295683 "cofilin/tropomyosin type actin binding domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 144 (55.7 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 33/120 (27%), Positives = 73/120 (60%)

Query:    25 DRYYQEQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQ 84
             +R  +++     Q+Q+ + E KE+  + +K+E  + L  Q+++E++K+++LK +Q ++EQ
Sbjct:   667 EREREKEEKKRKQQQLAQLE-KEERERNEKLEKDRQL--QLEQEIEKERKLKQQQKEKEQ 723

Query:    85 RVT-----QGEIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEK 139
             +       Q E +   ++D+K +EEK+ + +K +Q  ++  K +E+  + EK + +E EK
Sbjct:   724 KEQKEKREQREKEEKEEKDKKDKEEKEKQELKKKQQQQQQQKEKEKQERKEKEEREEREK 783

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|J9P4T1 ZNF853 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 140 (54.3 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 29/118 (24%), Positives = 72/118 (61%)

Query:    28 YQEQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKK-----KELKYRQYQE 82
             +Q+Q     Q+  L+ + +E+ LQ+Q++  ++ L+QQ Q+E +++     ++ ++ Q Q+
Sbjct:   152 WQQQKEQLQQQDQLQQQQEEEQLQQQQLLQQQQLQQQQQQEEEEQLQQQQQQQQHLQQQQ 211

Query:    83 EQRVTQGEIDRMTKQDE-KYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEK 139
             E+   Q +  +  K+++ + +++++ K ++L+Q  EE    ++Q  Q ++LQ Q+ E+
Sbjct:   212 EEEQLQQQHHQQQKEEQLQLQQQQEEKQLQLQQQQEEKQLQQQQHMQQDQLQQQQQEE 269

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

DICTYBASE|DDB_G0270410 DDB_G0270410 "SET domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 145 (56.1 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 28/114 (24%), Positives = 71/114 (62%)

Query:    27 YYQEQMYSATQRQMLEAESKEQALQRQKVEYR-KALEQQMQEELDKKKELKYRQYQEEQR 85
             ++    +S  +++  + + +EQ  ++++ + + + L+QQ Q+E DK+++ + ++++E+++
Sbjct:   423 HHHHHHHSEKEKEREQQKDREQQKEKEREQQKDRELQQQQQKEKDKEQKEREKEFKEKEK 482

Query:    86 VTQGEIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEK 139
               + +     K+ EK +E+++ K  K ++ +E+ LK +E+  Q EK Q Q+ EK
Sbjct:   483 EKEQKEKEKEKEKEKEKEKEKEKEQKEKEKLEKELKEKEK-EQKEKEQQQQKEK 535

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

DICTYBASE|DDB_G0276103 enlA "enlazin" [Dictyostelium discoideum (taxid:44689)]

 Score = 141 (54.7 bits), Expect = 3.3e-08, P = 3.3e-08
 Identities = 36/112 (32%), Positives = 68/112 (60%)

Query:    29 QEQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQ 88
             Q+Q + A Q+Q LE E K++ LQ Q  E R+  E  +Q E+D+++ +K ++ QE Q   +
Sbjct:   460 QQQEFIAKQQQ-LELE-KQRQLQDQLEEDRRLEELMLQMEMDQEERIKVKEEQERQEQEK 517

Query:    89 GEI-DRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQH-EKLQNQELE 138
              E+  +M +++EK +EE++   ++L Q+  E  +  E+ R   E+++ + LE
Sbjct:   518 LELAKKMQEEEEKLKEEQER--IRLEQERVEKERQEEEKRMELERIEEERLE 567

GO:0031589 "cell-substrate adhesion" evidence=IMP

GO:0005938 "cell cortex" evidence=IDA

GO:0000916 "actomyosin contractile ring contraction" evidence=IGI

GO:0000910 "cytokinesis" evidence=IGI

GO:0051015 "actin filament binding" evidence=ISS

GO:0005543 "phospholipid binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	142
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.001
TIGR01069	771	TIGR01069, mutS2, MutS2 family protein	0.003

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 7/101 (6%)

Query: 42  EAES-KEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGE--IDRMTKQD 98
           EAE+ K++AL   K E  K   +  +E  +++ EL+    + E+R+ Q E  +DR  +  
Sbjct: 50  EAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQ----KLEKRLLQKEENLDRKLELL 105

Query: 99  EKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEK 139
           EK  EE + K  +L Q  +E  K  E++ +  + Q QELE+
Sbjct: 106 EKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELER 146

Length = 520

>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein

 Score = 36.3 bits (84), Expect = 0.003
 Identities = 21/110 (19%), Positives = 51/110 (46%), Gaps = 9/110 (8%)

Query: 30  EQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQG 89
           E++ +  +    + E  E+ L+ Q+    K LEQ+M+E  ++++  K    +E Q   + 
Sbjct: 518 EKLSALEKELEQKNEHLEKLLKEQEKLK-KELEQEMEELKERERNKKLELEKEAQEALKA 576

Query: 90  EIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEK 139
               +     + +E+K +K         + +KS E + + ++ + +  +K
Sbjct: 577 LKKEVESIIRELKEKKIHK--------AKEIKSIEDLVKLKETKQKIPQK 618

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function [DNA metabolism, Other]. Length = 771

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	142
PF13868	350	Trichoplein: Tumour suppressor, Mitostatin	94.64

>PF13868 Trichoplein: Tumour suppressor, Mitostatin

Probab=94.64  E-value=1.6  Score=33.79  Aligned_cols=112  Identities=27%  Similarity=0.438  Sum_probs=80.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhHHHHHHHHhhhhhhhhhhhhhhhHHhHHH
Q psy7739          25 DRYYQEQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQGEIDRMTKQDEKYREE  104 (142)
Q Consensus        25 dryyqeqmysatqrqmleaeskeqalqrqkveyrkaleqqmqeeldkkkelkyrqyqeeqrvtqgeidrmtkqdekyree  104 (142)
                      ++.|...|-..-..-.-+.+.++.........++.+|..||.+ ....+...+.....|...-...+-+....+..-...
T Consensus        40 e~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~L~~Qi~e-~~~~r~~e~e~~~~E~~~~~~~~~~~~~Ee~~~~~~  118 (350)
T PF13868_consen   40 ERRYDEQMEEEREKAEEEEEEKEEERKEKRQEQRQALQEQIEE-RERRRQEEKEEKEREAEQLKEQIKQIQEEEEAEEEE  118 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555444444444445555556778899999999944 455555666677777777677777777778888888


Q ss_pred             HHHHHHHhhHHHHHhHHhHHHHHHHHHhhhhhh
Q psy7739         105 KQNKMMKLRQDMEESLKSREQMRQHEKLQNQEL  137 (142)
Q Consensus       105 kqnkmmklrqdmeeslksreqmrqheklqnqel  137 (142)
                      +..+...+++++..+...+..++..++....+.
T Consensus       119 k~~k~~~~~~e~~~~~~~~~~~k~~e~~~e~ee  151 (350)
T PF13868_consen  119 KREKQKELRQELDEFNEERKERKAREKEREKEE  151 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999888888877665543

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	142
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	9e-04

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 17/126 (13%), Positives = 47/126 (37%), Gaps = 15/126 (11%)

Query: 29   QEQMYSATQRQMLEAESKEQALQRQKVEY---RKALEQQMQEELDK---------KKELK 76
             ++++   + ++++ + K     ++          LE     E +K           E +
Sbjct: 919  YKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEE 978

Query: 77   YRQYQEEQRVTQGEIDRMTKQDEKYREEK---QNKMMKLRQDMEESLKSREQMRQHEKLQ 133
             +         Q EI ++ K+  + + EK   +    K + + E+ +   ++     K +
Sbjct: 979  AKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTE 1038

Query: 134  NQELEK 139
             +EL +
Sbjct: 1039 KEELNR 1044

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 37.1 bits (86), Expect = 9e-04
 Identities = 24/110 (21%), Positives = 52/110 (47%), Gaps = 3/110 (2%)

Query: 30   EQMYSATQRQMLEAESKEQALQRQKVEYRKALEQQMQEELDKKKELKYRQYQEEQRVTQG 89
            +Q     + Q+ E E+  Q LQ +KV     + ++M++++   ++ +  +  +E+++ + 
Sbjct: 954  QQQMLDLEEQLEEEEAARQKLQLEKVTADGKI-KKMEDDILIMED-QNNKLTKERKLLEE 1011

Query: 90   EIDRMTKQDEKYREEKQNKMMKLRQDMEESLKSREQMRQHEKLQNQELEK 139
             +      +    EEK   + KL+   E  +   E   + E+   QELEK
Sbjct: 1012 RV-SDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEK 1060

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00