Psyllid ID: psy7740

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
Protein Sequence
MSSMTFGQKKFIPTAPDKGSFPLDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCRMEKELMAKEDWEKLEFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLATYDR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccEEEEccccHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHccccccccccccccHHHcccccccccccEEEEEEccHHHHHHHHHHHHHHHHHccccccccEEEEEEEEcccHHHHccHHHcccccEEEcccHHHHHccccccccHHHHHHHHccEEEEEEEcHHHHHHHHcccc
Coil and Loop (DISEMBL)
mssmtfgqkkfiptapdkgsfpldhygdcKAFMTKYMICIKknnsdssacRDEIKDYLGCRMEKELMAKEDWEKLEFNILLCctgsvatiklPELIEQIEQLQYEFNKIMIINLNVVMtkhafhfvpdlphkpnirfysdddewiswekrgdpvlhielskwcdiivlapldantlAKLATYDR
Flexible Loop (DISEMBL)
mssmtfgqkkfiptapdkgsfplDHYGDCKAFMTKYMICIKknnsdssacrDEIKDYLGCRMEKELMAKEDWEKLEFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFvpdlphkpnIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLATYDR
Low Complexity Region (SEG)
MSSMTFGQKKFIPTAPDKGSFPLDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCRMEKELMAKEDWEKLEFNILLCCTGSVATiklpelieqieqlqYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLATYDR
Disordered region (IsUnstruct)
*******************SFPLDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCRMEKELMAKEDWEKLEFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA****
Disordered Region (DISOPRED)
*****************KGSFPLDHYGDCKAFMTK******************************************************IKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLATY**
Disordered Region (DISEMBL)
********KKFIPTAPDKGSFPLDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCRMEKELMAKEDWEKLEFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLATYDR
Disordered Region (DISPRO)
*********KFIPTAPDKGSFPLDHYGDCKAFMTKYMICIKKNNS*S**CRDEIKDYLGCRMEKELMAKEDWEKLEFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLATYDR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSMTFGQKKFIPTAPDKGSFPLDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCRMEKELMAKEDWEKLEFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLATYDR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	184	2.2.26 [Sep-21-2011]
A8E4L1	89	Cytochrome c oxidase asse	yes	N/A	0.434	0.898	0.55	2e-21
Q8K0C8	92	Cytochrome c oxidase asse	yes	N/A	0.434	0.869	0.525	4e-20
Q49B96	90	Cytochrome c oxidase asse	yes	N/A	0.429	0.877	0.544	2e-19
Q8BZB2	204	Phosphopantothenoylcystei	no	N/A	0.543	0.490	0.422	3e-18
Q9SWE5	209	Phosphopantothenoylcystei	yes	N/A	0.565	0.497	0.4	1e-17
P94063	201	Probable phosphopantothen	no	N/A	0.494	0.452	0.451	2e-17
Q96CD2	204	Phosphopantothenoylcystei	no	N/A	0.527	0.475	0.424	2e-17
P0CM86	115	Cytochrome c oxidase asse	no	N/A	0.391	0.626	0.5	3e-15
P0CM87	115	Cytochrome c oxidase asse	N/A	N/A	0.391	0.626	0.5	3e-15
Q5AL10	133	Cytochrome c oxidase asse	N/A	N/A	0.364	0.503	0.5	4e-14

>sp|A8E4L1|COX19_BOVIN Cytochrome c oxidase assembly protein COX19 OS=Bos taurus GN=COX19 PE=2 SV=1

 Score =  102 bits (253), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 61/80 (76%)

Query: 2  SSMTFGQKKFIPTAPDKGSFPLDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCR 61
          ++M FG K F P  PDKGSFPLDH+G+CK+F  K+M C++ NN +++ CR+E K+YL CR
Sbjct: 3  TAMNFGSKSFQPRPPDKGSFPLDHFGECKSFKEKFMKCLRDNNFENALCRNESKEYLECR 62

Query: 62 MEKELMAKEDWEKLEFNILL 81
          ME++LMA+E  EKL F  L+
Sbjct: 63 MERQLMAQEPLEKLGFGDLI 82

May be required for the assembly of mitochondrial cytochrome c oxidase.
Bos taurus (taxid: 9913)

>sp|Q8K0C8|COX19_MOUSE Cytochrome c oxidase assembly protein COX19 OS=Mus musculus GN=Cox19 PE=3 SV=1

 Score = 97.4 bits (241), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 59/80 (73%)

Query: 2  SSMTFGQKKFIPTAPDKGSFPLDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCR 61
          ++M FG K F P  PDKGSFPLDH+G+CK+F  K+M C++  N +++ CR+E K+YL CR
Sbjct: 3  TAMNFGTKSFQPRPPDKGSFPLDHFGECKSFKEKFMRCLRDKNYENALCRNESKEYLMCR 62

Query: 62 MEKELMAKEDWEKLEFNILL 81
          M+++LMA E  EKL F  L+
Sbjct: 63 MQRQLMAPEPLEKLGFRDLM 82

May be required for the assembly of mitochondrial cytochrome c oxidase.

Mus musculus (taxid: 10090)

>sp|Q49B96|COX19_HUMAN Cytochrome c oxidase assembly protein COX19 OS=Homo sapiens GN=COX19 PE=1 SV=1

 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/79 (54%), Positives = 56/79 (70%)

Query: 2  SSMTFGQKKFIPTAPDKGSFPLDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCR 61
          ++M FG K F P  PDKGSFPLDH G+CK+F  K+M C+  NN +++ CR E K+YL CR
Sbjct: 3  TAMNFGTKSFQPRPPDKGSFPLDHLGECKSFKEKFMKCLHNNNFENALCRKESKEYLECR 62

Query: 62 MEKELMAKEDWEKLEFNIL 80
          ME++LM +E  EKL F  L
Sbjct: 63 MERKLMLQEPLEKLGFGDL 81

May be required for the assembly of mitochondrial cytochrome c oxidase.

Homo sapiens (taxid: 9606)

>sp|Q8BZB2|COAC_MOUSE Phosphopantothenoylcysteine decarboxylase OS=Mus musculus GN=Ppcdc PE=2 SV=1

 Score = 91.3 bits (225), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/109 (42%), Positives = 69/109 (63%), Gaps = 9/109 (8%)

Query: 73  EKLEFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHK 132
           E+ +F +L+  TGSVA +KLP L+ ++  +         + + VV T+ A HF    P  
Sbjct: 14  EERKFRVLVGVTGSVAALKLPLLVSKLLDVPG-------LEVTVVTTERAKHFYS--PQD 64

Query: 133 PNIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLAT 181
             +  YSD DEW  W++R DPVLHI+L +W D++++APLDANTL K+A+
Sbjct: 65  VPVTLYSDADEWEMWKRRSDPVLHIDLRRWADLMLVAPLDANTLGKVAS 113

Necessary for the biosynthesis of coenzyme A. Catalyzes the decarboxylation of 4-phosphopantothenoylcysteine to form 4'-phosphopantotheine.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q9SWE5|HAL3A_ARATH Phosphopantothenoylcysteine decarboxylase OS=Arabidopsis thaliana GN=HAL3A PE=1 SV=1

 Score = 89.4 bits (220), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 65/120 (54%), Gaps = 16/120 (13%)

Query: 68  AKEDWEKLEFN-------ILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTK 120
            K D + +E N       +LL  +GSVA IK   L     +            +  V+TK
Sbjct: 4   GKRDRQDMEVNTTPRKPRVLLAASGSVAAIKFGNLCHCFTEWA---------EVRAVVTK 54

Query: 121 HAFHFVPDLPHKPNIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
            + HF+  L     +  Y+D+DEW SW K GDPVLHIEL +W D++V+APL ANTL K+A
Sbjct: 55  SSLHFLDKLSLPQEVTLYTDEDEWSSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKIA 114

Involved in plant growth and salt and osmotic tolerance. Catalyzes the decarboxylation of 4'-phosphopantothenoylcysteine to 4'-phosphopantetheine, a key step in coenzyme A biosynthesis. The enzyme is also able to decarboxylate pantothenoylcysteine to pantothenoylcysteamine.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|P94063|HAL3B_ARATH Probable phosphopantothenoylcysteine decarboxylase OS=Arabidopsis thaliana GN=HAL3B PE=2 SV=2

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/104 (45%), Positives = 63/104 (60%), Gaps = 13/104 (12%)

Query: 79  ILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFV--PDLPHKPNIR 136
           ILL  +GSVA+IK   L     +            +  V +K + +FV  P LP   N+ 
Sbjct: 14  ILLAASGSVASIKFSNLCHCFSEWA---------EVKAVASKSSLNFVDKPSLPQ--NVT 62

Query: 137 FYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
            Y+D+DEW SW K GDPVLHIEL +W D++++APL ANTLAK+A
Sbjct: 63  LYTDEDEWSSWNKIGDPVLHIELRRWADVMIIAPLSANTLAKIA 106

Involved in plant growth and salt and osmotic tolerance. Catalyzes the decarboxylation of 4'-phosphopantothenoylcysteine to 4'-phosphopantetheine, a key step in coenzyme A biosynthesis. The enzyme is also able to decarboxylate pantothenoylcysteine to pantothenoylcysteamine.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q96CD2|COAC_HUMAN Phosphopantothenoylcysteine decarboxylase OS=Homo sapiens GN=PPCDC PE=1 SV=2

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 67/106 (63%), Gaps = 9/106 (8%)

Query: 76  EFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNI 135
           +F++L+  TGSVA +KLP L+ ++  +         + + VV T+ A HF    P    +
Sbjct: 17  KFHVLVGVTGSVAALKLPLLVSKLLDIPG-------LEVAVVTTERAKHFYS--PQDIPV 67

Query: 136 RFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLAT 181
             YSD DEW  W+ R DPVLHI+L +W D++++APLDANTL K+A+
Sbjct: 68  TLYSDADEWEIWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVAS 113

Necessary for the biosynthesis of coenzyme A. Catalyzes the decarboxylation of 4-phosphopantothenoylcysteine to form 4'-phosphopantotheine.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|P0CM86|COX19_CRYNJ Cytochrome c oxidase assembly protein COX19 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=COX19 PE=3 SV=1

 Score = 81.6 bits (200), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 51/76 (67%), Gaps = 4/76 (5%)

Query: 4  MTFGQKKFI----PTAPDKGSFPLDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLG 59
          M+FG+  F     P+ P +GSFPLDH G+CKAFM  Y+ C+K+N +D+  CR   K YL 
Sbjct: 1  MSFGRPGFADVFKPSPPARGSFPLDHDGECKAFMISYLKCMKENANDNGKCRLFSKQYLE 60

Query: 60 CRMEKELMAKEDWEKL 75
          CRM+K LMA++D   L
Sbjct: 61 CRMDKGLMARDDMANL 76

Required for the assembly of mitochondrial cytochrome c oxidase.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CM87|COX19_CRYNB Cytochrome c oxidase assembly protein COX19 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=COX19 PE=3 SV=1

 Score = 81.6 bits (200), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/76 (50%), Positives = 51/76 (67%), Gaps = 4/76 (5%)

Query: 4  MTFGQKKFI----PTAPDKGSFPLDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLG 59
          M+FG+  F     P+ P +GSFPLDH G+CKAFM  Y+ C+K+N +D+  CR   K YL 
Sbjct: 1  MSFGRPGFADVFKPSPPARGSFPLDHDGECKAFMISYLKCMKENANDNGKCRLFSKQYLE 60

Query: 60 CRMEKELMAKEDWEKL 75
          CRM+K LMA++D   L
Sbjct: 61 CRMDKGLMARDDMANL 76

Required for the assembly of mitochondrial cytochrome c oxidase.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|Q5AL10|COX19_CANAL Cytochrome c oxidase assembly protein COX19 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=COX19 PE=3 SV=1

 Score = 77.8 bits (190), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/68 (50%), Positives = 47/68 (69%), Gaps = 1/68 (1%)

Query: 9  KKFIPTAPDKGSFPLDHYGDCKAFMTKYMICIK-KNNSDSSACRDEIKDYLGCRMEKELM 67
          + + PT P++GSFPLDH G+CK +MTKY+ C+K   N ++  CR   K YL CRM+ +LM
Sbjct: 12 RTWTPTPPERGSFPLDHDGECKEYMTKYLTCMKFTENKNAPNCRILAKQYLKCRMDNQLM 71

Query: 68 AKEDWEKL 75
           K DW+ L
Sbjct: 72 EKSDWDSL 79

Required for the assembly of mitochondrial cytochrome c oxidase.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
242002948	268	Phosphopantothenoylcysteine decarboxylas	0.891	0.611	0.486	2e-41
195381333	270	GJ21565 [Drosophila virilis] gi|19414420	0.945	0.644	0.424	4e-35
312374097	192	hypothetical protein AND_16473 [Anophele	0.510	0.489	0.547	4e-24
118792853	191	AGAP011994-PA [Anopheles gambiae str. PE	0.543	0.523	0.550	6e-24
157125990	91	hypothetical protein AaeL_AAEL010363 [Ae	0.418	0.846	0.675	2e-23
91093228	188	PREDICTED: similar to AGAP011994-PA [Tri	0.532	0.521	0.553	2e-23
357616004	79	hypothetical protein KGM_10360 [Danaus p	0.418	0.974	0.688	4e-23
170073301	86	cytochrome c oxidase assembly protein CO	0.423	0.906	0.653	4e-23
322789998	198	hypothetical protein SINV_02925 [Solenop	0.521	0.484	0.519	3e-22
332373874	188	unknown [Dendroctonus ponderosae]	0.543	0.531	0.561	3e-22

>gi|242002948|ref|XP_002422553.1| Phosphopantothenoylcysteine decarboxylase, putative [Pediculus humanus corporis] gi|212505343|gb|EEB09815.1| Phosphopantothenoylcysteine decarboxylase, putative [Pediculus humanus corporis]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 88/181 (48%), Positives = 114/181 (62%), Gaps = 17/181 (9%)

Query: 1   MSSMTFGQKKFIPTAPDKGSFPLDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGC 60
           MSS  F QK F    PDKGSFPLDH G CK  M KYM C+     ++S CR+EIK+YL C
Sbjct: 1   MSSYKFAQKPFNFVPPDKGSFPLDHDGVCKDLMMKYMDCLAAYKRENSKCREEIKNYLDC 60

Query: 61  RMEKELMAKEDWEKLEFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTK 120
           RM  ELM +E W+ L         GSVA +K+P L+ ++ +++        +N+ +V T+
Sbjct: 61  RMNNELMTRESWKNL---------GSVAALKIPLLVNKLLEIKK-------VNIKIVTTR 104

Query: 121 HAFHFVPDLPHKPNIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
           HA HF        N+   +DD+EW SW+ RGDPVLHIEL+KW D+ V+APLDANTL KLA
Sbjct: 105 HALHFFKK-KDVGNVDVLTDDNEWKSWKNRGDPVLHIELTKWADLFVIAPLDANTLGKLA 163

Query: 181 T 181
            
Sbjct: 164 N 164

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195381333|ref|XP_002049407.1| GJ21565 [Drosophila virilis] gi|194144204|gb|EDW60600.1| GJ21565 [Drosophila virilis]

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 81/191 (42%), Positives = 120/191 (62%), Gaps = 17/191 (8%)

Query: 1   MSSMTFGQKKFIPTAPDKGSFPLDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGC 60
           M+S  + QKKF+PTAP+KGSFPLDH   CK     Y  C+++N +D++ CR E ++    
Sbjct: 1   MTSQIYSQKKFVPTAPEKGSFPLDHESLCKKHFLIYASCLRRNENDNAKCRAEAQEMGEI 60

Query: 61  RMEKELMAKEDWE-------KLEFNILLCCTGSVATIKLPELIEQI--EQLQYEFNKIMI 111
            +  +     +         + E N+L+  TGSVATIKL +LI ++  E+L Y+FN    
Sbjct: 61  GLSGKDATNGEAAAAASIKLRPERNVLIAATGSVATIKLVQLISELSNEKLPYKFN---- 116

Query: 112 INLNVVMTKHAFHFVPDLPHKP-NIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAP 170
             + V++T+HA HF  +L   P ++    + DEW++W KRGDPVLHIEL KW  ++++AP
Sbjct: 117 --VKVIITEHAKHFF-ELEQVPEHVPILHNRDEWLAWNKRGDPVLHIELGKWAHMLLIAP 173

Query: 171 LDANTLAKLAT 181
           L AN+LAK+AT
Sbjct: 174 LSANSLAKIAT 184

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312374097|gb|EFR21738.1| hypothetical protein AND_16473 [Anopheles darlingi]

 Score =  116 bits (290), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 58/106 (54%), Positives = 79/106 (74%), Gaps = 12/106 (11%)

Query: 78  NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVP--DLPHKPNI 135
           NIL+ CTGSVATIKLP L+E+++QL  E        + V++TKHA HF    DLP   ++
Sbjct: 7   NILIGCTGSVATIKLPMLVEKLQQLDVE--------IRVIVTKHAQHFFARADLPE--SV 56

Query: 136 RFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLAT 181
             ++D DEW +W++RGDPVLHIEL KW D++V+APLDAN+LAK+A+
Sbjct: 57  LVHTDADEWNNWQQRGDPVLHIELGKWADLLVIAPLDANSLAKMAS 102

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118792853|ref|XP_320537.3| AGAP011994-PA [Anopheles gambiae str. PEST] gi|116117098|gb|EAA00226.3| AGAP011994-PA [Anopheles gambiae str. PEST]

 Score =  115 bits (289), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 60/109 (55%), Positives = 82/109 (75%), Gaps = 9/109 (8%)

Query: 74  KLEFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVP--DLPH 131
           K++ NIL+ CTGSVATIKLP L+E++ QL  EF     + ++V++T+HA HF    DLP 
Sbjct: 2   KVKKNILVGCTGSVATIKLPLLVEKLLQLT-EFE----VEVHVIVTEHARHFFSPQDLPA 56

Query: 132 KPNIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
              +  ++D +EW SW+KRGDPVLHIEL KW D++V+APLDAN+LAK+A
Sbjct: 57  A--VTLHTDAEEWTSWQKRGDPVLHIELGKWADLLVIAPLDANSLAKMA 103

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157125990|ref|XP_001654482.1| hypothetical protein AaeL_AAEL010363 [Aedes aegypti] gi|157125994|ref|XP_001654484.1| hypothetical protein AaeL_AAEL010350 [Aedes aegypti] gi|157131992|ref|XP_001662396.1| hypothetical protein AaeL_AAEL012296 [Aedes aegypti] gi|108871311|gb|EAT35536.1| AAEL012296-PA [Aedes aegypti] gi|108873456|gb|EAT37681.1| AAEL010363-PA [Aedes aegypti] gi|108873458|gb|EAT37683.1| AAEL010350-PA [Aedes aegypti]

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/77 (67%), Positives = 60/77 (77%)

Query: 1  MSSMTFGQKKFIPTAPDKGSFPLDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGC 60
          M+SMTFGQKKFIPTAP+KGSFPLDH G CK  M  YM C++ NN D+SACR E K YL C
Sbjct: 1  MTSMTFGQKKFIPTAPEKGSFPLDHEGQCKKLMLYYMRCLRANNDDNSACRQESKAYLQC 60

Query: 61 RMEKELMAKEDWEKLEF 77
          RM+  LMAKE++ KL F
Sbjct: 61 RMDNNLMAKEEFSKLGF 77

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91093228|ref|XP_967462.1| PREDICTED: similar to AGAP011994-PA [Tribolium castaneum] gi|270016594|gb|EFA13040.1| hypothetical protein TcasGA2_TC010571 [Tribolium castaneum]

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/103 (55%), Positives = 71/103 (68%), Gaps = 5/103 (4%)

Query: 78  NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRF 137
           NIL+ CTGSVATIKLP L+  +  LQ+     + I + +V+T+ A HF       P+   
Sbjct: 3   NILIGCTGSVATIKLPLLVNSLLGLQH-----LQIKIRIVVTERAKHFFDQKDIHPDAEV 57

Query: 138 YSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
           +SD DEW  W KRGDPVLHIELSKW D+ V+APLDANTLAK+A
Sbjct: 58  FSDSDEWAGWTKRGDPVLHIELSKWADVFVIAPLDANTLAKIA 100

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357616004|gb|EHJ69948.1| hypothetical protein KGM_10360 [Danaus plexippus]

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 53/77 (68%), Positives = 59/77 (76%)

Query: 4  MTFGQKKFIPTAPDKGSFPLDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCRME 63
          MTFGQK+FIPTAPDKGSFPLDH G CK  M +YM C+  NNSD+S CR E K+YL CRM+
Sbjct: 1  MTFGQKQFIPTAPDKGSFPLDHDGICKKSMVRYMNCLYGNNSDNSKCRTEAKEYLACRMD 60

Query: 64 KELMAKEDWEKLEFNIL 80
            LMAKEDW KL F  L
Sbjct: 61 HGLMAKEDWSKLGFKEL 77

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170073301|ref|XP_001870349.1| cytochrome c oxidase assembly protein COX19 [Culex quinquefasciatus] gi|167869873|gb|EDS33256.1| cytochrome c oxidase assembly protein COX19 [Culex quinquefasciatus]

 Score =  113 bits (282), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 51/78 (65%), Positives = 61/78 (78%)

Query: 1  MSSMTFGQKKFIPTAPDKGSFPLDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGC 60
          M+SMTFGQKKFIPTAP+KGSFPLDH G CK  M  YM C++ NN D+SACR E + YL C
Sbjct: 1  MTSMTFGQKKFIPTAPEKGSFPLDHEGQCKKLMLYYMRCLRTNNDDNSACRQECRAYLQC 60

Query: 61 RMEKELMAKEDWEKLEFN 78
          RM+  LMAKE++ KL F+
Sbjct: 61 RMDHNLMAKEEFSKLGFS 78

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322789998|gb|EFZ15074.1| hypothetical protein SINV_02925 [Solenopsis invicta]

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 54/104 (51%), Positives = 71/104 (68%), Gaps = 8/104 (7%)

Query: 78  NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRF 137
            IL+ CTGSVATIKLP+L+E + Q   E        + VV+T+ A HF+ D+   P ++ 
Sbjct: 8   RILVGCTGSVATIKLPQLVEMLRQNNLE--------VRVVVTERAKHFLKDVKLPPEVQI 59

Query: 138 YSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLAT 181
            SD  EW +W+ RGDPVLHI+L KW D+ VLAPLDANTL K+A+
Sbjct: 60  LSDTVEWAAWQDRGDPVLHIDLVKWADVFVLAPLDANTLGKIAS 103

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332373874|gb|AEE62078.1| unknown [Dendroctonus ponderosae]

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/105 (56%), Positives = 75/105 (71%), Gaps = 5/105 (4%)

Query: 78  NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMI-INLNVVMTKHAFHFVPDLPHKPNIR 136
           NIL+ CTGSVATIKLP LI++I Q   +F KI   I + VV T+HA HF  D     N+ 
Sbjct: 3   NILIGCTGSVATIKLPHLIQEIYQ---QFEKIHHNIKIRVVTTEHAKHFF-DPKDLGNVD 58

Query: 137 FYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLAT 181
            + D+DEW +W KRGD VLH+EL KW DI+++APLDAN+L K+AT
Sbjct: 59  VFCDEDEWSAWSKRGDEVLHVELGKWADILLIAPLDANSLGKIAT 103

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
UNIPROTKB|A8E4L1	89	COX19 "Cytochrome c oxidase as	0.434	0.898	0.55	7e-22
UNIPROTKB|F1RIX1	89	COX19 "Uncharacterized protein	0.429	0.887	0.556	1.1e-21
ZFIN|ZDB-GENE-070410-29	93	zgc:162175 "zgc:162175" [Danio	0.429	0.849	0.556	3.9e-21
MGI|MGI:1915283	92	Cox19 "cytochrome c oxidase as	0.434	0.869	0.525	1.7e-20
RGD|1305631	92	Cox19 "cytochrome c oxidase as	0.434	0.869	0.512	2.7e-20
UNIPROTKB|Q49B96	90	COX19 "Cytochrome c oxidase as	0.429	0.877	0.544	4.4e-20
UNIPROTKB|E2R2R1	89	COX19 "Uncharacterized protein	0.429	0.887	0.531	9.2e-20
FB|FBgn0050290	191	Ppcdc "Phosphopantothenoylcyst	0.559	0.539	0.440	8.3e-19
UNIPROTKB|E1C8I9	92	COX19 "Uncharacterized protein	0.434	0.869	0.475	4.6e-18
ZFIN|ZDB-GENE-040426-1749	231	ppcdc "phosphopantothenoylcyst	0.521	0.415	0.447	9.5e-18

UNIPROTKB|A8E4L1 COX19 "Cytochrome c oxidase assembly protein COX19" [Bos taurus (taxid:9913)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 44/80 (55%), Positives = 61/80 (76%)

Query:     2 SSMTFGQKKFIPTAPDKGSFPLDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCR 61
             ++M FG K F P  PDKGSFPLDH+G+CK+F  K+M C++ NN +++ CR+E K+YL CR
Sbjct:     3 TAMNFGSKSFQPRPPDKGSFPLDHFGECKSFKEKFMKCLRDNNFENALCRNESKEYLECR 62

Query:    62 MEKELMAKEDWEKLEFNILL 81
             ME++LMA+E  EKL F  L+
Sbjct:    63 MERQLMAQEPLEKLGFGDLI 82

GO:0005829 "cytosol" evidence=IEA

UNIPROTKB|F1RIX1 COX19 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 44/79 (55%), Positives = 60/79 (75%)

Query:     2 SSMTFGQKKFIPTAPDKGSFPLDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCR 61
             ++M FG K F P  PDKGSFPLDH+G+CK+F  K+M C++ NN +++ CR+E K+YL CR
Sbjct:     3 TAMNFGSKSFQPRPPDKGSFPLDHFGECKSFKEKFMKCLRDNNFENALCRNESKEYLECR 62

Query:    62 MEKELMAKEDWEKLEFNIL 80
             ME++LMA+E  EKL F  L
Sbjct:    63 MERQLMAQEPLEKLGFGDL 81

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-070410-29 zgc:162175 "zgc:162175" [Danio rerio (taxid:7955)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 44/79 (55%), Positives = 58/79 (73%)

Query:     2 SSMTFGQKKFIPTAPDKGSFPLDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCR 61
             ++M FG K F P  PDKG+FPLDH+G+CK+F   YM C++ N+ D+S CR E K+YL CR
Sbjct:     3 TAMNFGSKTFRPRPPDKGAFPLDHFGECKSFKEVYMQCLRNNHFDNSRCRIESKEYLECR 62

Query:    62 MEKELMAKEDWEKLEFNIL 80
             M+++LM KE  EKL FN L
Sbjct:    63 MDRQLMTKEPLEKLGFNDL 81

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1915283 Cox19 "cytochrome c oxidase assembly protein 19" [Mus musculus (taxid:10090)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 42/80 (52%), Positives = 59/80 (73%)

Query:     2 SSMTFGQKKFIPTAPDKGSFPLDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCR 61
             ++M FG K F P  PDKGSFPLDH+G+CK+F  K+M C++  N +++ CR+E K+YL CR
Sbjct:     3 TAMNFGTKSFQPRPPDKGSFPLDHFGECKSFKEKFMRCLRDKNYENALCRNESKEYLMCR 62

Query:    62 MEKELMAKEDWEKLEFNILL 81
             M+++LMA E  EKL F  L+
Sbjct:    63 MQRQLMAPEPLEKLGFRDLM 82

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

RGD|1305631 Cox19 "cytochrome c oxidase assembly homolog 19 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 41/80 (51%), Positives = 59/80 (73%)

Query:     2 SSMTFGQKKFIPTAPDKGSFPLDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCR 61
             ++M FG K F P  PDKGSFPLDH+G+CK+F  K+M C++  N +++ CR+E K+YL CR
Sbjct:     3 TAMNFGTKSFQPRPPDKGSFPLDHFGECKSFKEKFMKCLRDKNYENALCRNESKEYLMCR 62

Query:    62 MEKELMAKEDWEKLEFNILL 81
             M+++LMA E  EKL F  ++
Sbjct:    63 MQRQLMAPEPLEKLGFRDIM 82

GO:0005737 "cytoplasm" evidence=IEA;ISO

UNIPROTKB|Q49B96 COX19 "Cytochrome c oxidase assembly protein COX19" [Homo sapiens (taxid:9606)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 43/79 (54%), Positives = 56/79 (70%)

Query:     2 SSMTFGQKKFIPTAPDKGSFPLDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCR 61
             ++M FG K F P  PDKGSFPLDH G+CK+F  K+M C+  NN +++ CR E K+YL CR
Sbjct:     3 TAMNFGTKSFQPRPPDKGSFPLDHLGECKSFKEKFMKCLHNNNFENALCRKESKEYLECR 62

Query:    62 MEKELMAKEDWEKLEFNIL 80
             ME++LM +E  EKL F  L
Sbjct:    63 MERKLMLQEPLEKLGFGDL 81

GO:0005829 "cytosol" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|E2R2R1 COX19 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 42/79 (53%), Positives = 57/79 (72%)

Query:     2 SSMTFGQKKFIPTAPDKGSFPLDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCR 61
             ++M FG K F P  PDKGSFPLDH+G+CK+F  K+M C++ +  +++ CR E K YL CR
Sbjct:     3 TAMNFGSKTFQPRPPDKGSFPLDHFGECKSFKEKFMKCLRDSKFENALCRKESKAYLECR 62

Query:    62 MEKELMAKEDWEKLEFNIL 80
             ME++LMA+E  EKL F  L
Sbjct:    63 MERQLMAQEPLEKLGFGDL 81

GO:0005737 "cytoplasm" evidence=IEA

FB|FBgn0050290 Ppcdc "Phosphopantothenoylcysteine decarboxylase" [Drosophila melanogaster (taxid:7227)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 48/109 (44%), Positives = 66/109 (60%)

Query:    74 KLEFNILLCCTGSVATXXXXXXXXXXXXXXYEFNKIMIINLNVVMTKHAFHFVPDLPHKP 133
             K E N+++  TGSVAT                F      +L V++T+ A HF  +L   P
Sbjct:     2 KPERNVMIAATGSVATIKLAQLIRELSDERLPFK----FHLKVLITEAAKHFF-ELEQIP 56

Query:   134 -NIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLAT 181
              N+  Y + DEWI+W KRGDPVLHI+L KW D++V+APL AN+L+K+AT
Sbjct:    57 ENVPIYHNRDEWITWNKRGDPVLHIDLGKWADLLVIAPLSANSLSKMAT 105

GO:0003824 "catalytic activity" evidence=IEA

GO:0015937 "coenzyme A biosynthetic process" evidence=ISA

GO:0004633 "phosphopantothenoylcysteine decarboxylase activity" evidence=ISA

UNIPROTKB|E1C8I9 COX19 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 38/80 (47%), Positives = 54/80 (67%)

Query:     2 SSMTFGQKKFIPTAPDKGSFPLDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCR 61
             ++M F  K F P  PDKG+FPLDH+G+C AF  ++M C++ +  +S ACR+    YL CR
Sbjct:     3 TAMNFSAKSFKPRPPDKGAFPLDHFGECSAFKERFMQCLRDSGFESGACRERAMAYLQCR 62

Query:    62 MEKELMAKEDWEKLEFNILL 81
             M+++LMA E  EKL F  L+
Sbjct:    63 MDRQLMANEPLEKLGFKDLM 82

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-040426-1749 ppcdc "phosphopantothenoylcysteine decarboxylase" [Danio rerio (taxid:7955)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 47/105 (44%), Positives = 64/105 (60%)

Query:    77 FNILLCCTGSVATXXXXXXXXXXXXXXYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIR 136
             F++L+  TGSVA                +  +I  +++ VV T HA HF  D+   P +R
Sbjct:    49 FHVLVGLTGSVAALKAPLLVK-------QLLEIPEVDVRVVTTDHATHFY-DINEVP-VR 99

Query:   137 FYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLAT 181
              Y+D DEW  W KR DPVLHIEL +W D++V+APLDANTL K+A+
Sbjct:   100 VYTDKDEWEMWTKRSDPVLHIELRRWADLLVIAPLDANTLGKIAS 144

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8K0C8	COX19_MOUSE	No assigned EC number	0.525	0.4347	0.8695	yes	N/A
A8E4L1	COX19_BOVIN	No assigned EC number	0.55	0.4347	0.8988	yes	N/A
Q49B96	COX19_HUMAN	No assigned EC number	0.5443	0.4293	0.8777	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	184
PLN02496	209	PLN02496, PLN02496, probable phosphopantothenoylcy	1e-24
pfam02441	132	pfam02441, Flavoprotein, Flavoprotein	2e-19
PRK05579	399	PRK05579, PRK05579, bifunctional phosphopantotheno	4e-14
TIGR00521	390	TIGR00521, coaBC_dfp, phosphopantothenoylcysteine	4e-13
PRK07313	182	PRK07313, PRK07313, phosphopantothenoylcysteine de	4e-12
COG0452	392	COG0452, Dfp, Phosphopantothenoylcysteine syntheta	4e-12
TIGR02113	177	TIGR02113, coaC_strep, phosphopantothenoylcysteine	3e-10
PRK13982	475	PRK13982, PRK13982, bifunctional SbtC-like/phospho	8e-08
pfam06747	35	pfam06747, CHCH, CHCH domain	4e-06

>gnl|CDD|215274 PLN02496, PLN02496, probable phosphopantothenoylcysteine decarboxylase

 Score = 95.0 bits (236), Expect = 1e-24
 Identities = 43/102 (42%), Positives = 58/102 (56%), Gaps = 9/102 (8%)

Query: 79  ILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRFY 138
           ILL  +GSVA IK   L     +            +  V+TK + HF+       ++  Y
Sbjct: 22  ILLAASGSVAAIKFGNLCHCFSEWA---------EVRAVVTKASLHFIDRASLPKDVTLY 72

Query: 139 SDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
           +D+DEW SW K GD VLHIEL +W D++V+APL ANTL K+A
Sbjct: 73  TDEDEWSSWNKIGDSVLHIELRRWADVMVIAPLSANTLGKIA 114

Length = 209

>gnl|CDD|217035 pfam02441, Flavoprotein, Flavoprotein

 Score = 79.1 bits (196), Expect = 2e-19
 Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 16/106 (15%)

Query: 78  NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLP--HKPNI 135
            ILL  TGS A IK   L+ ++++   E        + V+++K A  F+           
Sbjct: 2   KILLGITGSSAAIKALRLLRELKKEGAE--------VRVILSKAAKKFITPETLEALSGE 53

Query: 136 RFYSDDDEWISWEKRGDPVLHIEL-SKWCDIIVLAPLDANTLAKLA 180
             Y+D     +W    D + HI L S+W D++V+AP  ANTLAK+A
Sbjct: 54  EVYTD-----AWYDEDDIIAHIALGSRWADLMVVAPATANTLAKIA 94

This family contains diverse flavoprotein enzymes. This family includes epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance. dipicolinate synthase catalyzes the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenyl-acrylic acid decarboxylase (EC:4.1.1.-). Length = 132

>gnl|CDD|235513 PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

 Score = 68.6 bits (169), Expect = 4e-14
 Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 18/107 (16%)

Query: 78  NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRF 137
            I+L  +G +A  K  EL+ ++ +   +        + VVMT+ A  FV         + 
Sbjct: 8   RIVLGVSGGIAAYKALELVRRLRKAGAD--------VRVVMTEAAKKFV----TPLTFQA 55

Query: 138 YSD----DDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
            S      D W         + HIEL+KW D++++AP  A+ +AKLA
Sbjct: 56  LSGNPVSTDLWD--PAAEAAMGHIELAKWADLVLIAPATADLIAKLA 100

Length = 399

>gnl|CDD|233006 TIGR00521, coaBC_dfp, phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase

 Score = 66.2 bits (162), Expect = 4e-13
 Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 11/103 (10%)

Query: 78  NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRF 137
            ILL  TG +A  K  EL+ ++ +   E        + V+MT+ A  F+  L  +     
Sbjct: 5   KILLGVTGGIAAYKTVELVRELVRQGAE--------VKVIMTEAAKKFITPLTLEALSGH 56

Query: 138 YSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
               + W   E      LHI+L+KW D+I++AP  ANT++K+A
Sbjct: 57  KVVTELWGPIEHN---ALHIDLAKWADLILIAPATANTISKIA 96

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A]. Length = 390

>gnl|CDD|235986 PRK07313, PRK07313, phosphopantothenoylcysteine decarboxylase; Validated

 Score = 61.5 bits (150), Expect = 4e-12
 Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 20/109 (18%)

Query: 77  FNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPD-----LPH 131
            NILL  +GS+A  K  +L  Q+ +  Y         + V+MTK A  F+       L  
Sbjct: 2   KNILLAVSGSIAAYKAADLTSQLTKRGY--------QVTVLMTKAATKFITPLTLQVLSK 53

Query: 132 KPNIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
            P    + D  +    E     + HIEL+K  D+ ++AP  ANT+AKLA
Sbjct: 54  NP---VHLDVMD----EHDPKLMNHIELAKRADLFLVAPATANTIAKLA 95

Length = 182

>gnl|CDD|223529 COG0452, Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]

 Score = 63.1 bits (154), Expect = 4e-12
 Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 15/105 (14%)

Query: 78  NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRF 137
            ILL  TGS+A  K  EL+  + +   E        + VVMT+ A  F+         + 
Sbjct: 6   RILLGVTGSIAAYKSVELVRLLRRSGAE--------VRVVMTESARKFI----TPLTFQA 53

Query: 138 YSDDD--EWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
            S +     +  E  G  V HIEL++W D++++AP  ANT+AKLA
Sbjct: 54  LSGNPVYTLLDEELTG-SVEHIELARWADLLLVAPATANTIAKLA 97

Length = 392

>gnl|CDD|131168 TIGR02113, coaC_strep, phosphopantothenoylcysteine decarboxylase, streptococcal

 Score = 56.0 bits (135), Expect = 3e-10
 Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 14/105 (13%)

Query: 78  NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRF 137
            ILL  TGS+A  K  +L  Q+ +L Y        ++ V+MT+ A  F+  L     ++ 
Sbjct: 2   KILLAVTGSIAAYKAADLTSQLTKLGY--------DVTVLMTQAATQFITPL----TLQV 49

Query: 138 YSDDDEWISWEKRGDP--VLHIELSKWCDIIVLAPLDANTLAKLA 180
            S +   +      DP  + HIEL+K  D+ ++AP  ANT+A LA
Sbjct: 50  LSKNPVHLDVMDEHDPKVINHIELAKKADLFLVAPASANTIAHLA 94

In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A]. Length = 177

>gnl|CDD|172484 PRK13982, PRK13982, bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional

 Score = 50.9 bits (122), Expect = 8e-08
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 14/106 (13%)

Query: 78  NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKP--NI 135
            + L   G +A  K  +LI ++++            +  V+TK A  FV  L        
Sbjct: 72  RVTLIIGGGIAAYKALDLIRRLKERGAH--------VRCVLTKAAQQFVTPLTASALSGQ 123

Query: 136 RFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLAT 181
           R Y+D       E   D   HI L++ CD+IV+AP  A+ +AK+A 
Sbjct: 124 RVYTD---LFDPESEFD-AGHIRLARDCDLIVVAPATADLMAKMAN 165

Length = 475

>gnl|CDD|148383 pfam06747, CHCH, CHCH domain

 Score = 41.5 bits (98), Expect = 4e-06
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 29 CKAFMTKYMICIKKNNSDSSACRDEIKDYLGCRME 63
          C      ++ C+K+N+ + S CR E   +  C  +
Sbjct: 1  CGEEFKAFLKCLKENSDELSKCRKEFDAFRQCVKK 35

we have identified a conserved motif in the LOC118487 protein that we have called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterized proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11-kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit. The CHCH domain was previously called DUF657. Length = 35

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	184
KOG3477|consensus	97		100.0
PLN02496	209	probable phosphopantothenoylcysteine decarboxylase	99.93
KOG0672|consensus	218		99.92
PRK07313	182	phosphopantothenoylcysteine decarboxylase; Validat	99.91
TIGR02113	177	coaC_strep phosphopantothenoylcysteine decarboxyla	99.89
PRK08305	196	spoVFB dipicolinate synthase subunit B; Reviewed	99.86
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	99.86
PRK13982	475	bifunctional SbtC-like/phosphopantothenoylcysteine	99.86
PRK05920	204	aromatic acid decarboxylase; Validated	99.86
PF02441	129	Flavoprotein: Flavoprotein; InterPro: IPR003382 Th	99.86
PRK06029	185	3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Prov	99.84
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	99.83
TIGR00421	181	ubiX_pad polyprenyl P-hydroxybenzoate and phenylac	99.82
TIGR02700	234	flavo_MJ0208 archaeoflavoprotein, MJ0208 family. T	99.8
COG0452	392	Dfp Phosphopantothenoylcysteine synthetase/decarbo	99.79
TIGR02852	187	spore_dpaB dipicolinic acid synthetase, B subunit.	99.77
TIGR02699	174	archaeo_AfpA archaeoflavoprotein AfpA. The prototy	99.63
COG0163	191	UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase	99.51
COG1036	187	Archaeal flavoproteins [Energy production and conv	99.22
PF06747	35	CHCH: CHCH domain; InterPro: IPR010625 A conserved	98.72
KOG4695|consensus	122		94.92
PF05676	66	NDUF_B7: NADH-ubiquinone oxidoreductase B18 subuni	93.5
PF08991	67	DUF1903: Domain of unknown function (DUF1903); Int	87.04
PF08583	69	Cmc1: Cytochrome c oxidase biogenesis protein Cmc1	81.43

>KOG3477|consensus

Probab=100.00  E-value=4.9e-36  Score=217.07  Aligned_cols=86  Identities=41%  Similarity=0.742  Sum_probs=78.9

Q ss_pred             CCC-cCCCCCCcccCCCCCCCCCCCCCCccHHHHHHHHHHHhhcCCCChhhHHHhhhhhhccchhhhhhhhhhhhhhhhh
Q psy7740           1 MSS-MTFGQKKFIPTAPDKGSFPLDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCRMEKELMAKEDWEKLEFNI   79 (184)
Q Consensus         1 ~~~-~~~~~~~~~~~~p~~g~fpldh~~~c~~~~~~y~~cl~~~~~~~~~cr~~~k~yl~crm~~~Lm~k~~~~~LGf~i   79 (184)
                      ||+ ..-+.+..+|+|||||||||||+|||+.+|..||.||+....+++.||.+||.||+|||+++||.+++|++|||..
T Consensus         1 MS~~g~~~~r~lrp~pPekGsFPLDH~geC~~em~eYl~Cl~~k~e~~~eCR~laK~YlqCRMdh~Lmdkdd~~~LG~~~   80 (97)
T KOG3477|consen    1 MSTGGAGGNRGLRPIPPEKGSFPLDHLGECTAEMKEYLGCLKSKAENSEECRLLAKKYLQCRMDHGLMDKDDMAELGFSG   80 (97)
T ss_pred             CCCCCCCCcccccCCCcccCCcCCCcccccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhcccccHHHHHHcCCCc
Confidence            777 4466899999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhcCCCc
Q psy7740          80 LLCCTGS   86 (184)
Q Consensus        80 llg~tGS   86 (184)
                      +-.++++
T Consensus        81 ~k~ls~~   87 (97)
T KOG3477|consen   81 VKELSST   87 (97)
T ss_pred             cccCcCC
Confidence            5555544

>PLN02496 probable phosphopantothenoylcysteine decarboxylase

Probab=99.93  E-value=2.7e-26  Score=191.55  Aligned_cols=100  Identities=43%  Similarity=0.744  Sum_probs=89.2

Q ss_pred             hhhhhhhhcCCCchHHhHHHHHHHHHHhccccccccccceEEEEcCchHHHhcCcCCCCCCCeeeeCCccchhcccCCCC
Q psy7740          74 KLEFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRFYSDDDEWISWEKRGDP  153 (184)
Q Consensus        74 ~LGf~illg~tGSiaa~k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~~~l~~~~~V~~d~de~~~~~~~~~~  153 (184)
                      ..+++|++|+|||+|++|++++++.|++ |  +      +|+|++|++|++|+++++++...+||+|.++|..|...+.+
T Consensus        17 ~~~k~IllgVtGSIAAyk~~~lvr~L~~-g--~------~V~VvmT~~A~~FI~p~~l~~~~~v~td~~~~~~~~~~~~~   87 (209)
T PLN02496         17 PRKPRILLAASGSVAAIKFGNLCHCFSE-W--A------EVRAVVTKASLHFIDRASLPKDVTLYTDEDEWSSWNKIGDS   87 (209)
T ss_pred             CCCCEEEEEEeCHHHHHHHHHHHHHhcC-C--C------eEEEEEChhHhhhcCHHHcCCCCcEEeCcccccccccCCCC
Confidence            3467899999999999999999999985 6  7      99999999999999999886445799998888666555678


Q ss_pred             cccccccccccEEEEcccccHHHHHHhcC
Q psy7740         154 VLHIELSKWCDIIVLAPLDANTLAKLATY  182 (184)
Q Consensus       154 ~~Hi~l~~~aD~~VVaPaSaNTlAKiA~~  182 (184)
                      +.||+|++|+|+|||||||||||||+|+|
T Consensus        88 ~~HI~La~wAD~~vVaPaTaNtlaKiA~G  116 (209)
T PLN02496         88 VLHIELRRWADVMVIAPLSANTLGKIAGG  116 (209)
T ss_pred             cchhHhhhhhCEEEEEeCCHHHHHHHHcc
Confidence            99999999999999999999999999997

>KOG0672|consensus

Probab=99.92  E-value=3.6e-26  Score=187.34  Aligned_cols=105  Identities=50%  Similarity=0.881  Sum_probs=96.0

Q ss_pred             hhhhhhhhcCCCchHHhHHHHHHHHHHhccccccccccceEEEEcCchHHHhcCcCCCCCCCeeeeCCccchhcccCCCC
Q psy7740          74 KLEFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRFYSDDDEWISWEKRGDP  153 (184)
Q Consensus        74 ~LGf~illg~tGSiaa~k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~~~l~~~~~V~~d~de~~~~~~~~~~  153 (184)
                      ..+|++|+|+|||+|++|++.+|+.|.+.. +.|+|   .|+||+|++|.+|+..+.+.....+|+|.|+|..|++.++|
T Consensus        18 d~K~hvL~gaTGSvA~iK~~~li~kL~ei~-G~dki---~iqvvvT~~a~~f~~~~~l~~~v~~~~d~DeW~~W~~r~dp   93 (218)
T KOG0672|consen   18 DGKFHVLLGATGSVAVIKLPLLIKKLEEIY-GRDKI---SIQVVVTKSATHFLEKLKLNKHVQLYTDEDEWKMWKSRSDP   93 (218)
T ss_pred             CCceeEEEEeccccceeehHHHHHHHHHhc-CCcce---eEEEEEechHHHHHhhcccccceeeecChHHhhhhhhcCCc
Confidence            457899999999999999999999999963 24443   79999999999999988877678999999999999999999


Q ss_pred             cccccccccccEEEEcccccHHHHHHhcC
Q psy7740         154 VLHIELSKWCDIIVLAPLDANTLAKLATY  182 (184)
Q Consensus       154 ~~Hi~l~~~aD~~VVaPaSaNTlAKiA~~  182 (184)
                      +.||+|+||||++||||.|||||||||+|
T Consensus        94 VLHIeLRrWADilliAPLsANTlaKiA~G  122 (218)
T KOG0672|consen   94 VLHIELRRWADILLIAPLSANTLAKIANG  122 (218)
T ss_pred             eeeehHhhhhhhheecccCcchHHHHHhh
Confidence            99999999999999999999999999997

>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated

Probab=99.91  E-value=4.2e-25  Score=180.66  Aligned_cols=95  Identities=35%  Similarity=0.431  Sum_probs=84.4

Q ss_pred             hhhhhhcCCCchHHhHHHHHHHHHHhccccccccccceEEEEcCchHHHhcCcCCCC--CCCeeeeCCccchhcccCCCC
Q psy7740          76 EFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHK--PNIRFYSDDDEWISWEKRGDP  153 (184)
Q Consensus        76 Gf~illg~tGSiaa~k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~~~l~--~~~~V~~d~de~~~~~~~~~~  153 (184)
                      ++||++|+|||++++|++++++.|++.|  +      +|+|++|++|++|++++.++  ++++|++|.+.+    ...++
T Consensus         1 ~k~Ill~vtGsiaa~~~~~li~~L~~~g--~------~V~vv~T~~A~~fi~~~~l~~l~~~~v~~~~~~~----~~~~~   68 (182)
T PRK07313          1 MKNILLAVSGSIAAYKAADLTSQLTKRG--Y------QVTVLMTKAATKFITPLTLQVLSKNPVHLDVMDE----HDPKL   68 (182)
T ss_pred             CCEEEEEEeChHHHHHHHHHHHHHHHCC--C------EEEEEEChhHHHHcCHHHHHHHhCCceEeccccc----cccCC
Confidence            3689999999999999999999999988  7      99999999999999988776  578999986432    12346


Q ss_pred             cccccccccccEEEEcccccHHHHHHhcC
Q psy7740         154 VLHIELSKWCDIIVLAPLDANTLAKLATY  182 (184)
Q Consensus       154 ~~Hi~l~~~aD~~VVaPaSaNTlAKiA~~  182 (184)
                      .+||++++|+|+|||+|||+|||||||+|
T Consensus        69 ~~hi~l~~~aD~~vIaPaTantlakiA~G   97 (182)
T PRK07313         69 MNHIELAKRADLFLVAPATANTIAKLAHG   97 (182)
T ss_pred             ccccccccccCEEEEeeCCHhHHHHHHcc
Confidence            78999999999999999999999999997

>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal

Probab=99.89  E-value=5.5e-24  Score=173.48  Aligned_cols=94  Identities=34%  Similarity=0.451  Sum_probs=82.2

Q ss_pred             hhhhhcCCCchHHhHHHHHHHHHHhccccccccccceEEEEcCchHHHhcCcCCCC--CCCeeeeCCccchhcccCCCCc
Q psy7740          77 FNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHK--PNIRFYSDDDEWISWEKRGDPV  154 (184)
Q Consensus        77 f~illg~tGSiaa~k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~~~l~--~~~~V~~d~de~~~~~~~~~~~  154 (184)
                      +||++|+|||++++|++++++.|++.|  +      +|+||+|++|++|++++.++  ++++|+++.  |..  ..+..+
T Consensus         1 k~I~lgvtGs~~a~~~~~ll~~L~~~g--~------~V~vi~T~~A~~fi~~~~l~~l~~~~v~~~~--~~~--~~~~~~   68 (177)
T TIGR02113         1 KKILLAVTGSIAAYKAADLTSQLTKLG--Y------DVTVLMTQAATQFITPLTLQVLSKNPVHLDV--MDE--HDPKVI   68 (177)
T ss_pred             CEEEEEEcCHHHHHHHHHHHHHHHHCC--C------EEEEEEChHHHhhccHhhHHHHhCCCeEeec--ccc--ccCCCc
Confidence            378999999999999999999999988  7      99999999999999998876  678898874  211  122457


Q ss_pred             ccccccccccEEEEcccccHHHHHHhcC
Q psy7740         155 LHIELSKWCDIIVLAPLDANTLAKLATY  182 (184)
Q Consensus       155 ~Hi~l~~~aD~~VVaPaSaNTlAKiA~~  182 (184)
                      .|+++++|+|+|||+|||||||||||+|
T Consensus        69 ~hi~l~~~aD~~vVaPaSanTlakiA~G   96 (177)
T TIGR02113        69 NHIELAKKADLFLVAPASANTIAHLAHG   96 (177)
T ss_pred             ccceechhhCEEEEEeCCHHHHHHHHcC
Confidence            8999999999999999999999999997

In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.

>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed

Probab=99.86  E-value=1.2e-22  Score=168.21  Aligned_cols=90  Identities=21%  Similarity=0.143  Sum_probs=77.8

Q ss_pred             hhhhhhhcCCCchHHhH-HHHHHHHHHhccccccccccceEEEEcCchHHHhcCcC--------CCC--CCCeeeeCCcc
Q psy7740          75 LEFNILLCCTGSVATIK-LPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDL--------PHK--PNIRFYSDDDE  143 (184)
Q Consensus        75 LGf~illg~tGSiaa~k-~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~~--------~l~--~~~~V~~d~de  143 (184)
                      .|++|++|+|||+|++| ++++++.|++.|  +      +|+|++|++|++|+.+.        .++  ++++|+++..+
T Consensus         4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G--~------~V~vv~T~aA~~~~~~~~~~~~~~~~l~~ls~~~v~~~~~~   75 (196)
T PRK08305          4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEG--A------EVTPIVSYTVQTTDTRFGKAEEWIKKIEEITGNKVINTIVE   75 (196)
T ss_pred             CCCEEEEEEcCHHHHHHHHHHHHHHHHhCc--C------EEEEEECHhHHHHhhhcCChHHHHHHHHHHHCCCcEEecCC
Confidence            47799999999999999 799999999998  8      99999999999997642        133  57888877311


Q ss_pred             chhcccCCCCcccccccccccEEEEcccccHHHHHHhcC
Q psy7740         144 WISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLATY  182 (184)
Q Consensus       144 ~~~~~~~~~~~~Hi~l~~~aD~~VVaPaSaNTlAKiA~~  182 (184)
                                ..|+++++|+|+|||||||||||||||+|
T Consensus        76 ----------~~~isls~~aD~mvIAPaSanTLAKiA~G  104 (196)
T PRK08305         76 ----------AEPLGPKKLLDCMVIAPCTGNTMAKLANA  104 (196)
T ss_pred             ----------CccCccccccCEEEEEeCCHhHHHHHHcc
Confidence                      45889999999999999999999999997

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=99.86  E-value=1.1e-22  Score=183.77  Aligned_cols=96  Identities=32%  Similarity=0.489  Sum_probs=85.0

Q ss_pred             hhhhhhhcCCCchHHhHHHHHHHHHHhccccccccccceEEEEcCchHHHhcCcCCCC--CCCeeeeCCccchhcccCCC
Q psy7740          75 LEFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHK--PNIRFYSDDDEWISWEKRGD  152 (184)
Q Consensus        75 LGf~illg~tGSiaa~k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~~~l~--~~~~V~~d~de~~~~~~~~~  152 (184)
                      .|++|++|+|||+++++++++++.|++.|  +      +|+|++|++|++|++++.++  ++++||++.  |..  ..+.
T Consensus         5 ~~k~IllgvTGsiaa~k~~~lv~~L~~~g--~------~V~vv~T~~A~~fi~~~~l~~l~~~~V~~~~--~~~--~~~~   72 (399)
T PRK05579          5 AGKRIVLGVSGGIAAYKALELVRRLRKAG--A------DVRVVMTEAAKKFVTPLTFQALSGNPVSTDL--WDP--AAEA   72 (399)
T ss_pred             CCCeEEEEEeCHHHHHHHHHHHHHHHhCC--C------EEEEEECHhHHHHHhHHHHHHhhCCceEccc--ccc--ccCC
Confidence            36789999999999999999999999998  8      99999999999999999887  688999873  421  1234


Q ss_pred             CcccccccccccEEEEcccccHHHHHHhcC
Q psy7740         153 PVLHIELSKWCDIIVLAPLDANTLAKLATY  182 (184)
Q Consensus       153 ~~~Hi~l~~~aD~~VVaPaSaNTlAKiA~~  182 (184)
                      +++||++.+|+|+|||||||||||||||+|
T Consensus        73 ~~~hi~l~~~aD~~vVaPaTaNtlaKiA~G  102 (399)
T PRK05579         73 AMGHIELAKWADLVLIAPATADLIAKLAHG  102 (399)
T ss_pred             CcchhhcccccCEEEEeeCCHHHHHHHHcc
Confidence            578999999999999999999999999997

>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional

Probab=99.86  E-value=1.7e-22  Score=186.03  Aligned_cols=96  Identities=30%  Similarity=0.418  Sum_probs=85.1

Q ss_pred             hhhhhhhcCCCchHHhHHHHHHHHHHhccccccccccceEEEEcCchHHHhcCcCCCC--CCCeeeeCCccchhcccCCC
Q psy7740          75 LEFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHK--PNIRFYSDDDEWISWEKRGD  152 (184)
Q Consensus        75 LGf~illg~tGSiaa~k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~~~l~--~~~~V~~d~de~~~~~~~~~  152 (184)
                      .|++|++|+||||++||++++++.|++.|  +      +|+|+||++|++|++++.++  ++++||+|.  |..  ..+.
T Consensus        69 ~~k~IllgVtGsIAayka~~lvr~L~k~G--~------~V~VvmT~sA~~fv~p~~~~~ls~~~V~~d~--~~~--~~~~  136 (475)
T PRK13982         69 ASKRVTLIIGGGIAAYKALDLIRRLKERG--A------HVRCVLTKAAQQFVTPLTASALSGQRVYTDL--FDP--ESEF  136 (475)
T ss_pred             CCCEEEEEEccHHHHHHHHHHHHHHHhCc--C------EEEEEECcCHHHHhhHHHHHHhcCCceEecC--CCc--cccc
Confidence            46899999999999999999999999998  8      99999999999999998876  689999874  321  1123


Q ss_pred             CcccccccccccEEEEcccccHHHHHHhcC
Q psy7740         153 PVLHIELSKWCDIIVLAPLDANTLAKLATY  182 (184)
Q Consensus       153 ~~~Hi~l~~~aD~~VVaPaSaNTlAKiA~~  182 (184)
                      .++|+++++|+|+|||||||||||||||+|
T Consensus       137 ~~~Hi~la~~aD~~vVAPATANTIAKiA~G  166 (475)
T PRK13982        137 DAGHIRLARDCDLIVVAPATADLMAKMANG  166 (475)
T ss_pred             CccchhhhhhcCEEEEeeCCHHHHHHHHcc
Confidence            578999999999999999999999999997

>PRK05920 aromatic acid decarboxylase; Validated

Probab=99.86  E-value=2.3e-22  Score=167.46  Aligned_cols=97  Identities=21%  Similarity=0.207  Sum_probs=80.6

Q ss_pred             hhhhhhhcCCCchHHhHHHHHHHHHHhccccccccccceEEEEcCchHHHhcCcCCCC--CCCeeeeCCccchhcccCCC
Q psy7740          75 LEFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHK--PNIRFYSDDDEWISWEKRGD  152 (184)
Q Consensus        75 LGf~illg~tGSiaa~k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~~~l~--~~~~V~~d~de~~~~~~~~~  152 (184)
                      .++||++|||||+|++|++++++.|++.|  +      +|+|++|++|++|++++...  .+++++++. .|..+  .+.
T Consensus         2 ~~krIllgITGsiaa~ka~~lvr~L~~~g--~------~V~vi~T~~A~~fv~~~~~~~l~~~~v~~~~-~~~~~--~~~   70 (204)
T PRK05920          2 KMKRIVLAITGASGAIYGVRLLECLLAAD--Y------EVHLVISKAAQKVLATETGLKLPAVPDLAEA-FLREQ--LGA   70 (204)
T ss_pred             CCCEEEEEEeCHHHHHHHHHHHHHHHHCC--C------EEEEEEChhHHHHHHHHhCCCCCCCeeecch-hhhhc--ccc
Confidence            35789999999999999999999999998  7      99999999999999987665  467888774 23222  123


Q ss_pred             Cccccccc-------------ccccEEEEcccccHHHHHHhcC
Q psy7740         153 PVLHIELS-------------KWCDIIVLAPLDANTLAKLATY  182 (184)
Q Consensus       153 ~~~Hi~l~-------------~~aD~~VVaPaSaNTlAKiA~~  182 (184)
                      ..+|+++.             +|+|+|||||||+|||||||+|
T Consensus        71 ~~~hi~l~~~~d~~a~~~sgs~~aD~~vVaPaTantlakiA~G  113 (204)
T PRK05920         71 AAGQLRVHGKDDWGAPIASGSFRTDGMVIAPCSMGTLAAIAHG  113 (204)
T ss_pred             ccCceeEcccccccCccccCccccCEEEEeeCCHhHHHHHHcc
Confidence            45677664             7999999999999999999997

>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []

Probab=99.86  E-value=1.7e-22  Score=155.61  Aligned_cols=93  Identities=43%  Similarity=0.729  Sum_probs=80.3

Q ss_pred             hhhhhcCCCchHHhHHHHHHHHHHhccccccccccceEEEEcCchHHHhcCcCCCCCCCeeeeCCccchhcccCCCCccc
Q psy7740          77 FNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRFYSDDDEWISWEKRGDPVLH  156 (184)
Q Consensus        77 f~illg~tGSiaa~k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~~~l~~~~~V~~d~de~~~~~~~~~~~~H  156 (184)
                      +||++++|||++++++++++++|++.|  +      +|+|++|++|++|++++. ..+++|+.+   |..| ..+...+|
T Consensus         1 k~i~l~vtGs~~~~~~~~~l~~L~~~g--~------~v~vv~S~~A~~~~~~~~-~~~~~v~~~---~~~~-~~~~~~~~   67 (129)
T PF02441_consen    1 KRILLGVTGSIAAYKAPDLLRRLKRAG--W------EVRVVLSPSAERFVTPEG-LTGEPVYTD---WDTW-DRGDPAEH   67 (129)
T ss_dssp             -EEEEEE-SSGGGGGHHHHHHHHHTTT--S------EEEEEESHHHHHHSHHHG-HCCSCEECT---HCTC-STTTTTCH
T ss_pred             CEEEEEEECHHHHHHHHHHHHHHhhCC--C------EEEEEECCcHHHHhhhhc-cccchhhhc---cccC-CCCCCcCc
Confidence            479999999999999999999999998  7      999999999999999988 446788887   2111 23456899


Q ss_pred             ccccccccEEEEcccccHHHHHHhcC
Q psy7740         157 IELSKWCDIIVLAPLDANTLAKLATY  182 (184)
Q Consensus       157 i~l~~~aD~~VVaPaSaNTlAKiA~~  182 (184)
                      +++++|+|+|||+|||+||+||+|+|
T Consensus        68 ~~~~~~~D~~vVaPaT~NtlaKiA~G   93 (129)
T PF02441_consen   68 IELSRWADAMVVAPATANTLAKIANG   93 (129)
T ss_dssp             HHHHHTESEEEEEEEEHHHHHHHHTT
T ss_pred             ccccccCCEEEEcccCHHHHHHHHhC
Confidence            99999999999999999999999998

This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....

>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional

Probab=99.84  E-value=8.1e-22  Score=162.00  Aligned_cols=88  Identities=18%  Similarity=0.130  Sum_probs=71.5

Q ss_pred             hhhhhcCCCchHHhHHHHHHHHHHh-ccccccccccceEEEEcCchHHHhcCcCC------CC-CCCeeeeCCccchhcc
Q psy7740          77 FNILLCCTGSVATIKLPELIEQIEQ-LQYEFNKIMIINLNVVMTKHAFHFVPDLP------HK-PNIRFYSDDDEWISWE  148 (184)
Q Consensus        77 f~illg~tGSiaa~k~~~li~~L~~-~g~~~~~~~~~~V~VilT~sA~~fv~~~~------l~-~~~~V~~d~de~~~~~  148 (184)
                      +||++|+|||+|++|++++++.|++ .|  +      +|+|++|++|++|++++.      +. ...+++.+.+.     
T Consensus         2 k~IllgVTGsiaa~ka~~l~~~L~k~~g--~------~V~vv~T~~A~~fv~~~~~~~~~~~~~l~~~v~~~~~~-----   68 (185)
T PRK06029          2 KRLIVGISGASGAIYGVRLLQVLRDVGE--I------ETHLVISQAARQTLAHETDFSLRDVQALADVVHDVRDI-----   68 (185)
T ss_pred             CEEEEEEECHHHHHHHHHHHHHHHhhcC--C------eEEEEECHHHHHHHHHHHCCChhhHHHhcCcccChhhc-----
Confidence            4799999999999999999999999 46  7      999999999999999872      11 12345543221     


Q ss_pred             cCCCCccccccc-ccccEEEEcccccHHHHHHhcC
Q psy7740         149 KRGDPVLHIELS-KWCDIIVLAPLDANTLAKLATY  182 (184)
Q Consensus       149 ~~~~~~~Hi~l~-~~aD~~VVaPaSaNTlAKiA~~  182 (184)
                           ..||+++ +|+|+|||||||||||||||+|
T Consensus        69 -----~~~i~~~s~~aD~~vIaPaTaNtlAKiA~G   98 (185)
T PRK06029         69 -----GASIASGSFGTDGMVIAPCSMKTLAKIAHG   98 (185)
T ss_pred             -----ccChhhcCchhCEEEEeeCCHhHHHHHHcc
Confidence                 2366663 6999999999999999999997

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=99.83  E-value=2.2e-21  Score=175.01  Aligned_cols=95  Identities=33%  Similarity=0.524  Sum_probs=81.9

Q ss_pred             hhhhhhhcCCCchHHhHHHHHHHHHHhccccccccccceEEEEcCchHHHhcCcCCCC--CCCeeeeCCccchhcccCCC
Q psy7740          75 LEFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHK--PNIRFYSDDDEWISWEKRGD  152 (184)
Q Consensus        75 LGf~illg~tGSiaa~k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~~~l~--~~~~V~~d~de~~~~~~~~~  152 (184)
                      .|++|++|+|||+++++++++++.|++.|  +      +|+|++|++|++|++++.++  ++++|+++.  |..   ...
T Consensus         2 ~~k~IllgiTGSiaa~~~~~ll~~L~~~g--~------~V~vv~T~~A~~fv~~~~l~~~~~~~v~~~~--~~~---~~~   68 (390)
T TIGR00521         2 ENKKILLGVTGGIAAYKTVELVRELVRQG--A------EVKVIMTEAAKKFITPLTLEALSGHKVVTEL--WGP---IEH   68 (390)
T ss_pred             CCCEEEEEEeCHHHHHHHHHHHHHHHhCC--C------EEEEEECHhHHHHHHHHHHHHhhCCceeehh--ccc---ccc
Confidence            36799999999999999999999999988  7      99999999999999999876  577888773  321   111


Q ss_pred             CcccccccccccEEEEcccccHHHHHHhcC
Q psy7740         153 PVLHIELSKWCDIIVLAPLDANTLAKLATY  182 (184)
Q Consensus       153 ~~~Hi~l~~~aD~~VVaPaSaNTlAKiA~~  182 (184)
                      ...||++++|+|+|||||||+|||||||+|
T Consensus        69 ~~~hi~l~~~aD~~vVaPaTanTlaKiA~G   98 (390)
T TIGR00521        69 NALHIDLAKWADLILIAPATANTISKIAHG   98 (390)
T ss_pred             ccchhhcccccCEEEEecCCHHHHHHHHcc
Confidence            122999999999999999999999999997

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases

Probab=99.82  E-value=2.9e-21  Score=158.01  Aligned_cols=87  Identities=21%  Similarity=0.243  Sum_probs=69.7

Q ss_pred             hhhhcCCCchHHhHHHHHHHHHHhccccccccccceEEEEcCchHHHhcCcCC------CCC-CCeeeeCCccchhcccC
Q psy7740          78 NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLP------HKP-NIRFYSDDDEWISWEKR  150 (184)
Q Consensus        78 ~illg~tGSiaa~k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~~~------l~~-~~~V~~d~de~~~~~~~  150 (184)
                      ||++|+|||||++|++++++.|++.|  +      +|+|++|++|++|++++.      ++. ...++.+          
T Consensus         1 ~illgvtGsiaa~ka~~lir~L~~~g--~------~V~vv~T~~A~~fv~~e~~~~~~~l~~~~~~~~~~----------   62 (181)
T TIGR00421         1 RIVVAMTGASGVIYGIRLLEVLKEAG--V------EVHLVISDWAKETIKYETDIDPGEVEELATKYYDA----------   62 (181)
T ss_pred             CEEEEEECHHHHHHHHHHHHHHHHCC--C------EEEEEECccHHHHHHHHHCCCHHHHHHHhhhhCCC----------
Confidence            58899999999999999999999998  7      999999999999998643      111 1112211          


Q ss_pred             CCCcccccc-cccccEEEEcccccHHHHHHhcC
Q psy7740         151 GDPVLHIEL-SKWCDIIVLAPLDANTLAKLATY  182 (184)
Q Consensus       151 ~~~~~Hi~l-~~~aD~~VVaPaSaNTlAKiA~~  182 (184)
                      .+...|+++ ++|+|+|||||||||||||||+|
T Consensus        63 ~~~~~~i~~~s~~aD~~vIaPATantiAkiA~G   95 (181)
T TIGR00421        63 DDFAAPIASGSFPFDGMVVVPCSMKTLSAIANG   95 (181)
T ss_pred             cccccccccCCchhCEEEEecCCHhHHHHHHcc
Confidence            112357764 78999999999999999999997

In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.

>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family

Probab=99.80  E-value=5.1e-20  Score=155.43  Aligned_cols=94  Identities=17%  Similarity=0.262  Sum_probs=75.4

Q ss_pred             hhhhcCCCchHH-hHHHHHHHHHHhc--cccccccccceEEEEcCchHHHhcCcCC----CC--CCCeeeeCCccchhcc
Q psy7740          78 NILLCCTGSVAT-IKLPELIEQIEQL--QYEFNKIMIINLNVVMTKHAFHFVPDLP----HK--PNIRFYSDDDEWISWE  148 (184)
Q Consensus        78 ~illg~tGSiaa-~k~~~li~~L~~~--g~~~~~~~~~~V~VilT~sA~~fv~~~~----l~--~~~~V~~d~de~~~~~  148 (184)
                      ||++|||||+.+ ++++++++.|++.  |  +      +|+|+||++|++|++++.    ++  ++++|+++.  |..-.
T Consensus         1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g--~------~V~vv~T~~a~~~i~~~~~~~~~~~~~~~~v~~~~--~~~~~   70 (234)
T TIGR02700         1 RIGWGITGAGHLLVESFQVMKELKREIEE--L------RVSTFVSRAGEEVVRMYGLWDDLREISPGGYYEEV--FTESE   70 (234)
T ss_pred             CeEEEEeCccHhHHHHHHHHHHHHhhcCC--C------eEEEEEChhHHhHHhhhhhHHHHHHHhCCCcchhc--ccccc
Confidence            588999996555 7999999999998  7  7      999999999999999984    33  478888773  21000


Q ss_pred             cC--CCCcccccccccccEEEEcccccHHHHHHhcC
Q psy7740         149 KR--GDPVLHIELSKWCDIIVLAPLDANTLAKLATY  182 (184)
Q Consensus       149 ~~--~~~~~Hi~l~~~aD~~VVaPaSaNTlAKiA~~  182 (184)
                      +.  +-..+|+++++ +|+|||||||||||||||+|
T Consensus        71 ~~~~~~~~~~i~~~~-~D~~vIaPaTantlakiA~G  105 (234)
T TIGR02700        71 EGASSPIIGRFALGK-YDLLIVSPATANTVAKIAHG  105 (234)
T ss_pred             ccccCCccceeeccc-cCEEEEecCChhHHHHHHcc
Confidence            00  11367999887 89999999999999999997

This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.

>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]

Probab=99.79  E-value=7.9e-20  Score=165.02  Aligned_cols=94  Identities=37%  Similarity=0.505  Sum_probs=84.2

Q ss_pred             hhhhhhcCCCchHHhHHHHHHHHHHhccccccccccceEEEEcCchHHHhcCcCCCC--CCCeeeeCCccchhcccCCCC
Q psy7740          76 EFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHK--PNIRFYSDDDEWISWEKRGDP  153 (184)
Q Consensus        76 Gf~illg~tGSiaa~k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~~~l~--~~~~V~~d~de~~~~~~~~~~  153 (184)
                      |++|+++||||||+||.+++++.|++.|  +      +|+|++|++|.+|+++++++  ++++|++ .  |.  ......
T Consensus         4 ~k~ill~v~gsiaayk~~~l~r~L~~~g--a------~v~vvmt~~a~~fv~p~~~~~~s~~~v~t-~--~~--~~~~~~   70 (392)
T COG0452           4 GKRILLGVTGSIAAYKSVELVRLLRRSG--A------EVRVVMTESARKFITPLTFQALSGNPVYT-L--LD--EELTGS   70 (392)
T ss_pred             CceEEEEecCchhhhhHHHHHHHHhhCC--C------eeEEEcchhhhhhcCcccHHHhhCCCccc-c--cc--cccccc
Confidence            4589999999999999999999999999  8      99999999999999999987  6889998 2  21  123456


Q ss_pred             cccccccccccEEEEcccccHHHHHHhcC
Q psy7740         154 VLHIELSKWCDIIVLAPLDANTLAKLATY  182 (184)
Q Consensus       154 ~~Hi~l~~~aD~~VVaPaSaNTlAKiA~~  182 (184)
                      ++||+|++|+|++||+|||+|||+|+|+|
T Consensus        71 ~~HI~l~~~adl~lvaPaTan~i~Kla~g   99 (392)
T COG0452          71 VEHIELARWADLLLVAPATANTIAKLAVG   99 (392)
T ss_pred             ccHhhhhhccCEEEecCCChhHHHHHHHh
Confidence            89999999999999999999999999986

>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit

Probab=99.77  E-value=1.2e-19  Score=149.47  Aligned_cols=88  Identities=18%  Similarity=0.112  Sum_probs=71.6

Q ss_pred             hhhhhcCCCchHHhHHH-HHHHHHHhccccccccccceEEEEcCchHHHhcCcC--------CCC--CCCeeeeCCccch
Q psy7740          77 FNILLCCTGSVATIKLP-ELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDL--------PHK--PNIRFYSDDDEWI  145 (184)
Q Consensus        77 f~illg~tGSiaa~k~~-~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~~--------~l~--~~~~V~~d~de~~  145 (184)
                      +||++|+|||+|+++++ ++++.|++.|  +      +|+||+|++|+++.+..        .++  ++++++++.+++ 
T Consensus         1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g--~------~V~vI~S~~A~~~~~~~g~~~~~i~~l~~~tg~~v~~~~~~~-   71 (187)
T TIGR02852         1 KRIGFGLTGSHCTLEAVMPQLEKLVDEG--A------EVTPIVSETVQTTDTRFGKGADWIKKIEEITGRPAINTIVEA-   71 (187)
T ss_pred             CEEEEEEecHHHHHHHHHHHHHHHHhCc--C------EEEEEEchhHHHHHHHcCChHHHHHHHHHHHCCCCEEECCCC-
Confidence            36899999999999997 9999999998  8      99999999999665532        122  577888774322 


Q ss_pred             hcccCCCCcccccccccccEEEEcccccHHHHHHhcC
Q psy7740         146 SWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLATY  182 (184)
Q Consensus       146 ~~~~~~~~~~Hi~l~~~aD~~VVaPaSaNTlAKiA~~  182 (184)
                               ..++.++|+|+|||||||+|||||||+|
T Consensus        72 ---------~~~~~s~~~D~mVIaPcTanTLAKiA~G   99 (187)
T TIGR02852        72 ---------EPFGPKVPLDCMVIAPLTGNSMSKLANA   99 (187)
T ss_pred             ---------cccCCchhhCEEEEEeCCHhHHHHHHcc
Confidence                     1134578999999999999999999997

Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.

>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA

Probab=99.63  E-value=2.4e-16  Score=128.52  Aligned_cols=91  Identities=21%  Similarity=0.215  Sum_probs=66.4

Q ss_pred             hhhhcCCCchHHh-HHHHHHHHHHhc-cccccccccceEEEEcCchHHHhcCcCCC-C--CCC--eeeeCCccchhcccC
Q psy7740          78 NILLCCTGSVATI-KLPELIEQIEQL-QYEFNKIMIINLNVVMTKHAFHFVPDLPH-K--PNI--RFYSDDDEWISWEKR  150 (184)
Q Consensus        78 ~illg~tGSiaa~-k~~~li~~L~~~-g~~~~~~~~~~V~VilT~sA~~fv~~~~l-~--~~~--~V~~d~de~~~~~~~  150 (184)
                      ||+||+|||+... ..+++++.|++. |  +      +|+|++|++|++|++.+.+ +  .+.  .++.+. +.   . .
T Consensus         1 ~i~~gitGsg~~l~e~v~~l~~L~~~~g--~------eV~vv~S~~A~~vi~~~~~~~~l~~~~~~~~~~~-~~---~-~   67 (174)
T TIGR02699         1 RIAWGITGSGDKLPETYSIMKDVKNRYG--D------EIDVFLSKAGEQVVKWYKLWDKLENDFPNFRVEI-NA---N-S   67 (174)
T ss_pred             CEEEEEEccHHHHHHHHHHHHHHHHhcC--C------EEEEEECHhHHHHHHHHHhHHHHhccCCcccccC-CC---C-C
Confidence            5889999995554 488888888754 5  7      9999999999999987754 2  111  123221 11   1 1


Q ss_pred             CCCcccccccccccEEEEcccccHHHHHHhcC
Q psy7740         151 GDPVLHIELSKWCDIIVLAPLDANTLAKLATY  182 (184)
Q Consensus       151 ~~~~~Hi~l~~~aD~~VVaPaSaNTlAKiA~~  182 (184)
                      +...+|+.+.+ +|+|||||||+|||||||+|
T Consensus        68 p~~sg~~~l~~-~D~~vVaPaTaNtlakiA~G   98 (174)
T TIGR02699        68 PFLAGQLQMGK-YDFLLIAPATANTVAKIAYG   98 (174)
T ss_pred             ccccCcccccc-cCEEEEEeCCHHHHHHHHcc
Confidence            12357888764 89999999999999999997

The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.

>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]

Probab=99.51  E-value=7.9e-15  Score=120.24  Aligned_cols=89  Identities=20%  Similarity=0.223  Sum_probs=72.6

Q ss_pred             hhhhhcCCCchHHhHHHHHHHHHHhccccccccccceEEEEcCchHHHhcCcCC--CCC-------CCeeeeCCccchhc
Q psy7740          77 FNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLP--HKP-------NIRFYSDDDEWISW  147 (184)
Q Consensus        77 f~illg~tGSiaa~k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~~~--l~~-------~~~V~~d~de~~~~  147 (184)
                      .++++|+||+++++++.++++.|++.+  +      ++++++|++|++.+..|.  ...       ...+|.+.      
T Consensus         3 ~riivgisGASG~iygvrlLe~L~~~~--~------e~hlviS~~a~~~~~~E~~~~~~~~~~~~~a~~~~~~~------   68 (191)
T COG0163           3 KRIIVGISGASGAIYGVRLLEVLRELG--V------ETHLVISKAAKKTLKYETGNDESLGEVLALADVVHDEK------   68 (191)
T ss_pred             cEEEEEEeccccHHHHHHHHHHHHhcC--c------eEEEEEcHHHHHHHHHHhCcchhhHHHhhhcceecCHH------
Confidence            478999999999999999999999998  7      999999999999887776  221       22344332      


Q ss_pred             ccCCCCcccccccccccEEEEcccccHHHHHHhcC
Q psy7740         148 EKRGDPVLHIELSKWCDIIVLAPLDANTLAKLATY  182 (184)
Q Consensus       148 ~~~~~~~~Hi~l~~~aD~~VVaPaSaNTlAKiA~~  182 (184)
                       +.++++++.+  ...|.|+|+|||+.|||+||+|
T Consensus        69 -D~~A~iASGS--~~~~gMiI~PCSmkTla~IA~G  100 (191)
T COG0163          69 -DIGAPIASGS--FRTDGMIIAPCSMKTLAAIAHG  100 (191)
T ss_pred             -HccCcccCCC--CCcCcEEEEeCcHHHHHHHHhc
Confidence             2356777664  5789999999999999999997

>COG1036 Archaeal flavoproteins [Energy production and conversion]

Probab=99.22  E-value=6.6e-12  Score=101.56  Aligned_cols=96  Identities=20%  Similarity=0.197  Sum_probs=67.1

Q ss_pred             hhhhhhhhhcCCCchHHhH-HHHHHHHHHhccccccccccceEEEEcCchHHHhcCcCCCC-----CCCeeeeCCccchh
Q psy7740          73 EKLEFNILLCCTGSVATIK-LPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHK-----PNIRFYSDDDEWIS  146 (184)
Q Consensus        73 ~~LGf~illg~tGSiaa~k-~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~~~l~-----~~~~V~~d~de~~~  146 (184)
                      ++++.||.||+|||.--+- ..+++..+++..+.+      +|.+.+|++|++++..+.|.     ....++.+.+    
T Consensus         5 ~~~~~rIaWgITGaG~~L~Et~~imk~lk~~~~~~------~v~v~lSkageeVvk~YgL~~~l~~~~~~~~~e~~----   74 (187)
T COG1036           5 EKKKKRIAWGITGAGHLLPETYQIMKELKKEYGDV------EVDVFLSKAGEEVVKMYGLWDKLEKIFGGLEVEIG----   74 (187)
T ss_pred             ccccceEEEEEeccccccHHHHHHHHHHHhhcCCc------eEEEeehhhHHHHHHHHHHHHHHHHHcCCeEeecC----
Confidence            3567789999999954332 444555555553234      89999999999999887643     1112333321    


Q ss_pred             cccCCCC--cccccccccccEEEEcccccHHHHHHhcC
Q psy7740         147 WEKRGDP--VLHIELSKWCDIIVLAPLDANTLAKLATY  182 (184)
Q Consensus       147 ~~~~~~~--~~Hi~l~~~aD~~VVaPaSaNTlAKiA~~  182 (184)
                         .+.|  ++.+++.+ +|+++|+|||+||+||||+|
T Consensus        75 ---ansPfi~GrlqlGk-YD~llvaPaTsNTvAKIa~G  108 (187)
T COG1036          75 ---ANSPFIAGRLQLGK-YDFLLVAPATSNTVAKIAYG  108 (187)
T ss_pred             ---CCCCceecceeccc-ccEEEEcccccchHHHHHhh
Confidence               1223  56778877 99999999999999999986

>PF06747 CHCH: CHCH domain; InterPro: IPR010625 A conserved motif was identified in the LOC118487 protein was called the CHCH motif

Probab=98.72  E-value=7e-09  Score=63.04  Aligned_cols=35  Identities=49%  Similarity=0.937  Sum_probs=32.8

Q ss_pred             cHHHHHHHHHHHhhcCCCChhhHHHhhhhhhccch
Q psy7740          29 CKAFMTKYMICIKKNNSDSSACRDEIKDYLGCRME   63 (184)
Q Consensus        29 c~~~~~~y~~cl~~~~~~~~~cr~~~k~yl~crm~   63 (184)
                      |..+|..||.||++|+++.++||.++++|++|||+
T Consensus         1 C~~e~~~~~~Cl~~n~~~~~~C~~~~~~~~~C~~~   35 (35)
T PF06747_consen    1 CAEEMKAYLACLKENNFDWSKCRKEFKAYKECRMK   35 (35)
T ss_dssp             THHHHHHHHHHHHCH-SSTCCCHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHHCCCcHHhhHHHHHHHHHHhhC
Confidence            88999999999999999999999999999999985

Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11 kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation []. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit []. The CHCH domain was previously called DUF657 []. ; PDB: 2ZXT_A 3A3C_A 2L0Y_A 2K3J_A.

>KOG4695|consensus

Probab=94.92  E-value=0.026  Score=43.26  Aligned_cols=36  Identities=33%  Similarity=0.722  Sum_probs=34.3

Q ss_pred             CCccHHHHHHHHHHHhhcCCCChhhHHHhhhhhhcc
Q psy7740          26 YGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCR   61 (184)
Q Consensus        26 ~~~c~~~~~~y~~cl~~~~~~~~~cr~~~k~yl~cr   61 (184)
                      +-.|..+|.-.+.|||.|++.+..||.+..-|+.|-
T Consensus        45 ~~tC~qEm~vlfaClK~nEF~d~~C~Kei~~f~dC~   80 (122)
T KOG4695|consen   45 EATCIQEMSVLFACLKQNEFRDDACRKEIQGFLDCA   80 (122)
T ss_pred             chHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence            678999999999999999999999999999999984

>PF05676 NDUF_B7: NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7); InterPro: IPR008698 NADH:ubiquinone oxidoreductase (complex I) (1

Probab=93.50  E-value=0.054  Score=37.85  Aligned_cols=49  Identities=20%  Similarity=0.427  Sum_probs=43.7

Q ss_pred             CCCCCCCCccHHHHHHHHHHHhhcCCCChhhHHHhhhhhhccchhhhhh
Q psy7740          20 SFPLDHYGDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCRMEKELMA   68 (184)
Q Consensus        20 ~fpldh~~~c~~~~~~y~~cl~~~~~~~~~cr~~~k~yl~crm~~~Lm~   68 (184)
                      --||..-.-|-+..+.|.+|++++....-+|..+--+|..|.-+.-++.
T Consensus        13 ~lPl~~RDyCAh~Li~l~kCrr~~~p~~~~C~~erH~y~~C~y~dy~~R   61 (66)
T PF05676_consen   13 KLPLQYRDYCAHLLIPLNKCRRDNFPFPWKCEHERHEYEKCQYDDYVMR   61 (66)
T ss_pred             CCChhhhhhHHHHHHHHHHHHHhCCCCcccCCcchhhHHHccHHHHHHH
Confidence            3588889999999999999999998888999999999999998776643

6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of several NADH-ubiquinone oxidoreductase B18 subunit proteins from different eukaryotic organisms. Oxidative phosphorylation is the well-characterised process in which ATP, the principal carrier of chemical energy of individual cells, is produced due to a mitochondrial proton gradient formed by the transfer of electrons from NADH and FADH2 to molecular oxygen. The oxidative phosphorylation (OXPHOS) system is located in the mitochondrial inner membrane and consists of five multi-subunit enzyme complexes and two small electron carriers: coenzyme Q10 and cytochrome C. At least 70 structural proteins involved in the formation of the whole OXPHOS system are encoded by nuclear genes, whereas 13 structural proteins are encoded by the mitochondrial genome. Deficiency of NADH ubiquinone oxidoreductase, the first enzyme complex of the mitochondrial respiratory chain, is one of the most frequent causes of Homo sapiens mitochondrial encephalomyopathies [].; GO: 0003954 NADH dehydrogenase activity, 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion

>PF08991 DUF1903: Domain of unknown function (DUF1903); InterPro: IPR009069 The mature-T-cell-proliferation (MTCP1) putative oncogene was identified for its involvement in t(X:14)(q28;q11)-associated T-cell leukaemia []

Probab=87.04  E-value=0.83  Score=31.93  Aligned_cols=36  Identities=28%  Similarity=0.565  Sum_probs=31.7

Q ss_pred             ccHHHHHHHHHHHhhcCCCChhhHHHhhhhhhccch
Q psy7740          28 DCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCRME   63 (184)
Q Consensus        28 ~c~~~~~~y~~cl~~~~~~~~~cr~~~k~yl~crm~   63 (184)
                      -|+.+--.-..||..|+++.+.|.+...+|-.|.-.
T Consensus         3 PC~~~Ac~iq~CL~~N~Yd~~kC~~~i~~l~~Cck~   38 (67)
T PF08991_consen    3 PCQKEACAIQKCLQRNNYDESKCQDYIDALYECCKK   38 (67)
T ss_dssp             TTHHHHHHHHHHHHHTTT-CCCTHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            488888889999999999999999999999999754

MTCP1 is alternatively spliced to produce two completely distinct proteins: the small mitochondrial protein, p8MTCP1, and the protein p13MTCP1, which shows strong homology to another oncogene product, p14TCL1. While p13MTCP1 expression appears to be restricted to mature T-cell proliferation with t(X,14) translocations, the mitochondrial p8MTCP1 is expressed at low levels in most human tissues, and is over-expressed in the proliferating T-cells. The biological function of p8MTCP1 is still unknown, but it appears to play a role in oncogenesis. The structure of p8MTCP1 reveals a disulphide-rich, irregular array of three helices [].; PDB: 2HP8_A 1EI0_A 1HP8_A.

>PF08583 Cmc1: Cytochrome c oxidase biogenesis protein Cmc1 like; InterPro: IPR013892 Cmc1 is a metallo-chaperone like protein which is known to localise to the inner mitochondrial membrane in Saccharomyces cerevisiae

Probab=81.43  E-value=1.1  Score=30.24  Aligned_cols=39  Identities=23%  Similarity=0.435  Sum_probs=32.9

Q ss_pred             CccHHHHHHHHHHHhhcC-CCChhhHHHhhhhhhccchhh
Q psy7740          27 GDCKAFMTKYMICIKKNN-SDSSACRDEIKDYLGCRMEKE   65 (184)
Q Consensus        27 ~~c~~~~~~y~~cl~~~~-~~~~~cr~~~k~yl~crm~~~   65 (184)
                      -.|..++..|..|.+... ..-+.||++.++.-.|--...
T Consensus        11 ~~C~~~i~~~~~C~~~~~~~~~~~C~~~~~~m~~Cl~~~~   50 (69)
T PF08583_consen   11 KKCADEIEAFAECHKDRTFKFVGKCREEKKAMNECLKEER   50 (69)
T ss_pred             HHhHHHHHHHHHHHhcchHHHHHhhhHHHHHHHHHHHHHH
Confidence            579999999999999944 456899999999999976543

It is essential for full expression of cytochrome c oxidase and respiration []. Cmc1 contains two Cx9C motifs and is able to bind copper(I). Cmc1 is thought to play a role in mitochondrial copper trafficking and transfer to cytochrome c oxidase.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	184
1mvl_A	209	Ppc Decarboxylase Mutant C175s Length = 209		1e-16
1e20_A	209	The Fmn Binding Protein Athal3 Length = 209		2e-16
1qzu_A	206	Crystal Structure Of Human Phosphopantothenoylcyste		5e-15

>pdb|1MVL|A Chain A, Ppc Decarboxylase Mutant C175s Length = 209

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 47/67 (70%)
Query: 114 LNVVMTKHAFHFVPDLPHKPNIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDA 173
           +  V+TK + HF+  L     +  Y+D+DEW SW K GDPVLHIEL +W D++V+APL A
Sbjct: 48  VRAVVTKSSLHFLDKLSLPQEVTLYTDEDEWSSWNKIGDPVLHIELRRWADVLVIAPLSA 107
Query: 174 NTLAKLA 180
           NTL K+A
Sbjct: 108 NTLGKIA 114

>pdb|1E20|A Chain A, The Fmn Binding Protein Athal3 Length = 209

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 47/67 (70%)
Query: 114 LNVVMTKHAFHFVPDLPHKPNIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDA 173
           +  V+TK + HF+  L     +  Y+D+DEW SW K GDPVLHIEL +W D++V+APL A
Sbjct: 48  VRAVVTKSSLHFLDKLSLPQEVTLYTDEDEWSSWNKIGDPVLHIELRRWADVLVIAPLSA 107
Query: 174 NTLAKLA 180
           NTL K+A
Sbjct: 108 NTLGKIA 114

>pdb|1QZU|A Chain A, Crystal Structure Of Human Phosphopantothenoylcysteine Decarboxylase Length = 206

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 60/106 (56%), Gaps = 9/106 (8%)
Query: 76  EFNILLCCTGSVATXXXXXXXXXXXXXXYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNI 135
           +F++L+  TGSVA                +   I  + + VV T+ A HF    P    +
Sbjct: 19  KFHVLVGVTGSVAALKLPLLVS-------KLLDIPGLEVAVVTTERAKHFYS--PQDIPV 69
Query: 136 RFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLAT 181
             YSD DEW  W+ R DPVLHI+L +W D++++APLDANTL K+A+
Sbjct: 70  TLYSDADEWEMWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVAS 115

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	184
1mvl_A	209	PPC decarboxylase athal3A; flavoprotein, active si	3e-31
1qzu_A	206	Hypothetical protein MDS018; alpha-beta sandwich,	3e-28
1g63_A	181	Epidermin modifying enzyme EPID; alpha, beta prote	2e-16
1p3y_1	194	MRSD protein; flavoprotein, FMN, rossmann fold, HF	5e-16
3qjg_A	175	Epidermin biosynthesis protein EPID; structural ge	6e-16
3lqk_A	201	Dipicolinate synthase subunit B; flavoprotein, PSI	3e-14
3mcu_A	207	Dipicolinate synthase, B chain; NESG, structural g	5e-14

>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A* Length = 209

 Score =  111 bits (280), Expect = 3e-31
 Identities = 44/103 (42%), Positives = 59/103 (57%), Gaps = 9/103 (8%)

Query: 78  NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRF 137
            +LL  +GSVA IK   L     +            +  V+TK + HF+  L     +  
Sbjct: 21  RVLLAASGSVAAIKFGNLCHCFTEW---------AEVRAVVTKSSLHFLDKLSLPQEVTL 71

Query: 138 YSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
           Y+D+DEW SW K GDPVLHIEL +W D++V+APL ANTL K+A
Sbjct: 72  YTDEDEWSSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKIA 114

>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1 Length = 206

 Score =  103 bits (259), Expect = 3e-28
 Identities = 45/104 (43%), Positives = 65/104 (62%), Gaps = 9/104 (8%)

Query: 77  FNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIR 136
           F++L+  TGSVA +KLP L+ ++  +         + + VV T+ A HF    P    + 
Sbjct: 20  FHVLVGVTGSVAALKLPLLVSKLLDIP-------GLEVAVVTTERAKHFYS--PQDIPVT 70

Query: 137 FYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
            YSD DEW  W+ R DPVLHI+L +W D++++APLDANTL K+A
Sbjct: 71  LYSDADEWEMWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVA 114

>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A* Length = 181

 Score = 72.2 bits (178), Expect = 2e-16
 Identities = 22/105 (20%), Positives = 48/105 (45%), Gaps = 19/105 (18%)

Query: 78  NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRF 137
            +L+C T S+  I +   I +++Q   E        +N++ +  + +F+        ++ 
Sbjct: 4   KLLICATASINVININHYIVELKQHFDE--------VNILFSPSSKNFINTD----VLKL 51

Query: 138 YSDD--DEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
           + D+  DE          + HI + +  + I++ P  ANT+ K+A
Sbjct: 52  FCDNLYDEIKDPL-----LNHINIVENHEYILVLPASANTINKIA 91

>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1 Length = 194

 Score = 71.5 bits (176), Expect = 5e-16
 Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 23/108 (21%)

Query: 78  NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVP-----DLPHK 132
            +L+   GS++++ +   +   +    E        + VVMTK A   +P          
Sbjct: 10  KLLIGICGSISSVGISSYLLYFKSFFKE--------IRVVMTKTAEDLIPAHTVSYFCDH 61

Query: 133 PNIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
                YS+  E       G    H+E+ +W DI  + P  AN L + A
Sbjct: 62  V----YSEHGE------NGKRHSHVEIGRWADIYCIIPATANILGQTA 99

>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} Length = 175

 Score = 70.7 bits (174), Expect = 6e-16
 Identities = 21/112 (18%), Positives = 48/112 (42%), Gaps = 33/112 (29%)

Query: 78  NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFV-P--------D 128
           N+L+C  GSV +I +   I +++    E        +NV+ + +   F+          +
Sbjct: 7   NVLICLCGSVNSINISHYIIELKSKFDE--------VNVIASTNGRKFINGEILKQFCDN 58

Query: 129 LPHKPNIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
                   +   +D +++         H++++   D I++ P  +NT+ K+A
Sbjct: 59  Y-------YDEFEDPFLN---------HVDIANKHDKIIILPATSNTINKIA 94

>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans} Length = 201

 Score = 66.7 bits (163), Expect = 3e-14
 Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 17/108 (15%)

Query: 78  NILLCCTGSVATI-KLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFV----PDLPHK 132
           ++    TGS  T  ++   +E++ +L  +        +   +T                 
Sbjct: 9   HVGFGLTGSHCTYHEVLPQMERLVELGAK--------VTPFVTHTVQTTDTKFGESSEWI 60

Query: 133 PNIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
             I+  +++    S  K              D +V+AP+  N+ +K A
Sbjct: 61  NKIKQITEEPIVDSMVK----AEPFGPKTPLDCMVIAPMTGNSTSKFA 104

>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus} Length = 207

 Score = 66.3 bits (162), Expect = 5e-14
 Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 15/107 (14%)

Query: 78  NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLP----HKP 133
            I    TGS  T +  E++  +E+L  E        +  V++                  
Sbjct: 7   RIGFGFTGSHCTYE--EVMPHLEKLIAEG-----AEVRPVVSYTVQSTNTRFGEGAEWIK 59

Query: 134 NIRFYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLA 180
            I   +      S          +      D +V+APL  N+++K A
Sbjct: 60  KIEEITGFKAINSIVG----AEPLGPKIPLDCMVIAPLTGNSMSKFA 102

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	184
1mvl_A	209	PPC decarboxylase athal3A; flavoprotein, active si	99.93
1qzu_A	206	Hypothetical protein MDS018; alpha-beta sandwich,	99.92
1g63_A	181	Epidermin modifying enzyme EPID; alpha, beta prote	99.9
3qjg_A	175	Epidermin biosynthesis protein EPID; structural ge	99.9
1p3y_1	194	MRSD protein; flavoprotein, FMN, rossmann fold, HF	99.9
3zqu_A	209	Probable aromatic acid decarboxylase; lyase; HET:	99.89
3lqk_A	201	Dipicolinate synthase subunit B; flavoprotein, PSI	99.88
3mcu_A	207	Dipicolinate synthase, B chain; NESG, structural g	99.87
2ejb_A	189	Probable aromatic acid decarboxylase; phenylacryli	99.86
1sbz_A	197	Probable aromatic acid decarboxylase; FMN binding,	99.83
1ei0_A	38	P8MTCP1; helix-turn-helix, disulfide bridges, cell	94.11
1hp8_A	68	HU-P8; leukemia, cysteine motif; NMR {Homo sapiens	92.72
2lql_A	113	Coiled-coil-helix-coiled-coil-helix domain-contai	92.63
2lql_A	113	Coiled-coil-helix-coiled-coil-helix domain-contai	82.89
2lqt_A	85	Coiled-coil-helix-coiled-coil-helix domain-contai	80.39

>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*

Probab=99.93  E-value=7e-27  Score=193.89  Aligned_cols=99  Identities=44%  Similarity=0.803  Sum_probs=91.2

Q ss_pred             hhhhhhhcCCCchHHhHHHHHHHHHHhccccccccccceEEEEcCchHHHhcCcCCCCCCCeeeeCCccchhcccCCCCc
Q psy7740          75 LEFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRFYSDDDEWISWEKRGDPV  154 (184)
Q Consensus        75 LGf~illg~tGSiaa~k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~~~l~~~~~V~~d~de~~~~~~~~~~~  154 (184)
                      .+++|++|+|||++++|++++++.|++.|         +|+||+|++|++|++++.++++.+||++.++|..|.+.++++
T Consensus        18 ~~k~IllgvTGsiaa~k~~~ll~~L~~~g---------~V~vv~T~~A~~fv~~~~~~~~~~v~~d~~~~~~~~~~~~~i   88 (209)
T 1mvl_A           18 RKPRVLLAASGSVAAIKFGNLCHCFTEWA---------EVRAVVTKSSLHFLDKLSLPQEVTLYTDEDEWSSWNKIGDPV   88 (209)
T ss_dssp             -CCEEEEEECSSGGGGGHHHHHHHHHTTS---------EEEEEECTGGGGTCCGGGSCTTCEEECTTHHHHHCSSTTSCC
T ss_pred             CCCEEEEEEeCcHHHHHHHHHHHHHhcCC---------CEEEEEcchHHHhcCHHHhhcCCeEEeCccccccccccCCCc
Confidence            36799999999999999999999999976         999999999999999999887889999987787776667789


Q ss_pred             ccccccccccEEEEcccccHHHHHHhcC
Q psy7740         155 LHIELSKWCDIIVLAPLDANTLAKLATY  182 (184)
Q Consensus       155 ~Hi~l~~~aD~~VVaPaSaNTlAKiA~~  182 (184)
                      .|+++.+|+|+|||||||||||||||+|
T Consensus        89 ~hi~l~~~aD~mvIaPaTanTlAKiA~G  116 (209)
T 1mvl_A           89 LHIELRRWADVLVIAPLSANTLGKIAGG  116 (209)
T ss_dssp             HHHHHHHHCSEEEEEEECHHHHHHHHHT
T ss_pred             cchhhcccCCEEEEecCCHHHHHHHHcc
Confidence            9999999999999999999999999997

>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1

Probab=99.92  E-value=1.9e-26  Score=190.81  Aligned_cols=99  Identities=44%  Similarity=0.799  Sum_probs=88.0

Q ss_pred             hhhhhhhhcCCCchHHhHHHHHHHHHHh-ccccccccccceEEEEcCchHHHhcCcCCCCCCCeeeeCCccchhcccCCC
Q psy7740          74 KLEFNILLCCTGSVATIKLPELIEQIEQ-LQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRFYSDDDEWISWEKRGD  152 (184)
Q Consensus        74 ~LGf~illg~tGSiaa~k~~~li~~L~~-~g~~~~~~~~~~V~VilT~sA~~fv~~~~l~~~~~V~~d~de~~~~~~~~~  152 (184)
                      ..+++|++|+|||++++|++++++.|++ .|  +      +|+||+|++|++|++++.++  .+||+|.|+|..|.+.+.
T Consensus        17 l~~k~IllgvTGsiaa~k~~~lv~~L~~~~g--~------~V~vv~T~~A~~fi~~~~~~--~~v~~d~d~~~~~~~~~~   86 (206)
T 1qzu_A           17 ERKFHVLVGVTGSVAALKLPLLVSKLLDIPG--L------EVAVVTTERAKHFYSPQDIP--VTLYSDADEWEMWKSRSD   86 (206)
T ss_dssp             CSSEEEEEEECSSGGGGTHHHHHHHHC---C--E------EEEEEECTGGGGSSCGGGSC--SCEECHHHHHHTCSSTTS
T ss_pred             cCCCEEEEEEeChHHHHHHHHHHHHHhcccC--C------EEEEEECHhHHHHhCHHHcC--ceEEecCcccccccCCCC
Confidence            3467999999999999999999999998 77  7      99999999999999999875  589998888877765556


Q ss_pred             CcccccccccccEEEEcccccHHHHHHhcC
Q psy7740         153 PVLHIELSKWCDIIVLAPLDANTLAKLATY  182 (184)
Q Consensus       153 ~~~Hi~l~~~aD~~VVaPaSaNTlAKiA~~  182 (184)
                      ++.||+|++|+|+|||||||||||||||+|
T Consensus        87 ~~~Hi~l~~~aD~~vIaPaTanTlAKiA~G  116 (206)
T 1qzu_A           87 PVLHIDLRRWADLLLVAPLDANTLGKVASG  116 (206)
T ss_dssp             CCHHHHHHTTCSEEEEEEECHHHHHHHHTT
T ss_pred             ccchhhcccccCEEEEecCCHHHHHHHHcc
Confidence            789999999999999999999999999997

>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*

Probab=99.90  E-value=1.1e-24  Score=176.88  Aligned_cols=89  Identities=24%  Similarity=0.310  Sum_probs=79.4

Q ss_pred             hhhhhcCCCchHHhHHHHHHHHHHhccccccccccceEEEEcCchHHHhcCcCCCC--CCCeeeeCCccchhcccCCCCc
Q psy7740          77 FNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHK--PNIRFYSDDDEWISWEKRGDPV  154 (184)
Q Consensus        77 f~illg~tGSiaa~k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~~~l~--~~~~V~~d~de~~~~~~~~~~~  154 (184)
                      +||++|+|||++++|++++++.|++.|  +      +|+||+|++|++|++++.++  +++  ++|  .|..|     ++
T Consensus         3 k~IllgvTGs~aa~k~~~l~~~L~~~g--~------~V~vv~T~~A~~fi~~~~l~~l~~~--~~d--~~~~~-----~~   65 (181)
T 1g63_A            3 GKLLICATASINVININHYIVELKQHF--D------EVNILFSPSSKNFINTDVLKLFCDN--LYD--EIKDP-----LL   65 (181)
T ss_dssp             CCEEEEECSCGGGGGHHHHHHHHTTTS--S------CEEEEECGGGGGTSCGGGGGGTSSC--EEC--TTTCT-----TC
T ss_pred             CEEEEEEECHHHHHHHHHHHHHHHHCC--C------EEEEEEchhHHHHHHHHHHHHHhCC--ccc--ccCCC-----CC
Confidence            589999999999999999999999988  7      99999999999999999887  455  555  34322     58


Q ss_pred             ccccccccccEEEEcccccHHHHHHhcC
Q psy7740         155 LHIELSKWCDIIVLAPLDANTLAKLATY  182 (184)
Q Consensus       155 ~Hi~l~~~aD~~VVaPaSaNTlAKiA~~  182 (184)
                      +|+++++|+|+|||||||+|||||||+|
T Consensus        66 ~hi~l~~~aD~~vIaPaTantlAKiA~G   93 (181)
T 1g63_A           66 NHINIVENHEYILVLPASANTINKIANG   93 (181)
T ss_dssp             CHHHHHHTCSEEEEEEECHHHHHHHHTT
T ss_pred             ccccccccCCEEEEecCCHHHHHHHHcc
Confidence            9999999999999999999999999997

>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0

Probab=99.90  E-value=6.4e-25  Score=177.64  Aligned_cols=90  Identities=23%  Similarity=0.404  Sum_probs=81.3

Q ss_pred             hhhhhhcCCCchHHhHHHHHHHHHHhccccccccccceEEEEcCchHHHhcCcCCCC--CCCeeeeCCccchhcccCCCC
Q psy7740          76 EFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHK--PNIRFYSDDDEWISWEKRGDP  153 (184)
Q Consensus        76 Gf~illg~tGSiaa~k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~~~l~--~~~~V~~d~de~~~~~~~~~~  153 (184)
                      ++||++|+|||++++|++++++.|++.|  +      +|+|++|++|++|++++.++  ++ +||+|.+        +..
T Consensus         5 ~k~IllgvTGs~aa~k~~~ll~~L~~~g--~------~V~vv~T~~A~~fi~~~~l~~l~~-~v~~~~~--------~~~   67 (175)
T 3qjg_A            5 GENVLICLCGSVNSINISHYIIELKSKF--D------EVNVIASTNGRKFINGEILKQFCD-NYYDEFE--------DPF   67 (175)
T ss_dssp             CCEEEEEECSSGGGGGHHHHHHHHTTTC--S------EEEEEECTGGGGGSCHHHHHHHCS-CEECTTT--------CTT
T ss_pred             CCEEEEEEeCHHHHHHHHHHHHHHHHCC--C------EEEEEECcCHHHHhhHHHHHHhcC-CEEecCC--------CCc
Confidence            4689999999999999999999999988  8      99999999999999999876  56 8988742        123


Q ss_pred             cccccccccccEEEEcccccHHHHHHhcC
Q psy7740         154 VLHIELSKWCDIIVLAPLDANTLAKLATY  182 (184)
Q Consensus       154 ~~Hi~l~~~aD~~VVaPaSaNTlAKiA~~  182 (184)
                      ++|+++++|+|+|||||||+|||||||+|
T Consensus        68 ~~hi~l~~~aD~~vVaPaTanTlakiA~G   96 (175)
T 3qjg_A           68 LNHVDIANKHDKIIILPATSNTINKIANG   96 (175)
T ss_dssp             CCHHHHHHTCSEEEEEEECHHHHHHHHTT
T ss_pred             cccccccchhCEEEEeeCCHHHHHHHHcc
Confidence            78999999999999999999999999997

>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1

Probab=99.90  E-value=5.8e-25  Score=180.35  Aligned_cols=92  Identities=24%  Similarity=0.384  Sum_probs=82.1

Q ss_pred             hhhhhhcCCCchHHhHHHHHHHHHHhccccccccccceEEEEcCchHHHhcCcCCCC--CCCeeeeCCccchhcccCCCC
Q psy7740          76 EFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHK--PNIRFYSDDDEWISWEKRGDP  153 (184)
Q Consensus        76 Gf~illg~tGSiaa~k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~~~l~--~~~~V~~d~de~~~~~~~~~~  153 (184)
                      |++|++|+|||++++|++++++.|++.|  +      +|+||+|++|++|++++.++  +++ ||+|  .|..+    .+
T Consensus         8 ~k~IllgvTGs~aa~k~~~l~~~L~~~g--~------~V~vv~T~~A~~fi~~~~~~~l~~~-v~~~--~~~~~----~~   72 (194)
T 1p3y_1            8 DKKLLIGICGSISSVGISSYLLYFKSFF--K------EIRVVMTKTAEDLIPAHTVSYFCDH-VYSE--HGENG----KR   72 (194)
T ss_dssp             GCEEEEEECSCGGGGGTHHHHHHHTTTS--S------EEEEEECHHHHHHSCHHHHGGGSSE-EECT--TCSSS----CC
T ss_pred             CCEEEEEEECHHHHHHHHHHHHHHHHCC--C------EEEEEEchhHHHHHHHHHHHHhcCC-Eecc--ccccC----CC
Confidence            6799999999999999999999999987  7      99999999999999999876  455 8877  34321    26


Q ss_pred             cccccccccccEEEEcccccHHHHHHhcC
Q psy7740         154 VLHIELSKWCDIIVLAPLDANTLAKLATY  182 (184)
Q Consensus       154 ~~Hi~l~~~aD~~VVaPaSaNTlAKiA~~  182 (184)
                      ++|+++.+|+|+|||||||||||||||+|
T Consensus        73 ~~hi~l~~~aD~~vIaPaTanTlAKiA~G  101 (194)
T 1p3y_1           73 HSHVEIGRWADIYCIIPATANILGQTANG  101 (194)
T ss_dssp             CCHHHHHHHCSEEEEEEECHHHHHHHHTT
T ss_pred             cCcccccccCCEEEEeCCCHHHHHHHHhh
Confidence            89999999999999999999999999997

>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0

Probab=99.89  E-value=1.2e-24  Score=180.44  Aligned_cols=99  Identities=16%  Similarity=0.076  Sum_probs=83.5

Q ss_pred             hhhhhhcCCCchHHhHHHHHHHHHHhccccccccccceEEEEcCchHHHhcCcCCCC--CCCee-----eeCCccch---
Q psy7740          76 EFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHK--PNIRF-----YSDDDEWI---  145 (184)
Q Consensus        76 Gf~illg~tGSiaa~k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~~~l~--~~~~V-----~~d~de~~---  145 (184)
                      +++|++|+|||+|++|++++++.|++.|  +      +|+||+|++|++|++++.+.  +++++     ++|..++.   
T Consensus         4 ~k~IllgvTGaiaa~k~~~ll~~L~~~g--~------eV~vv~T~~A~~fi~~et~~~ls~~~v~~~~~~~~~~~~~~~~   75 (209)
T 3zqu_A            4 PERITLAMTGASGAQYGLRLLDCLVQEE--R------EVHFLISKAAQLVMATETDVALPAKPQAMQAFLTEYCGAAAGQ   75 (209)
T ss_dssp             CSEEEEEECSSSCHHHHHHHHHHHHHTT--C------EEEEEECHHHHHHHHHHCSCCCCSSHHHHHHHHHHHHTCCTTT
T ss_pred             CCEEEEEEECHHHHHHHHHHHHHHHHCC--C------EEEEEECccHHHHHHHHhCCcccCCccchhhhhhhhhhccccc
Confidence            3689999999999999999999999998  8      99999999999999999876  57777     55432210   


Q ss_pred             -hcccCCCCccccccccc-ccEEEEcccccHHHHHHhcC
Q psy7740         146 -SWEKRGDPVLHIELSKW-CDIIVLAPLDANTLAKLATY  182 (184)
Q Consensus       146 -~~~~~~~~~~Hi~l~~~-aD~~VVaPaSaNTlAKiA~~  182 (184)
                       .|...++..+||++++| +|+|||||||||||||||+|
T Consensus        76 ~~~~~~~d~~~hI~~~~~~aD~mvIaPaSanTlakiA~G  114 (209)
T 3zqu_A           76 IRVFGQNDWMAPPASGSSAPNAMVICPCSTGTLSAVATG  114 (209)
T ss_dssp             EEECCTTCTTSGGGCTTSCCCEEEEEEECHHHHHHHHHT
T ss_pred             ceecccccccCCccccCcccCEEEEeeCCHhHHHHHHcc
Confidence             12233456889999999 99999999999999999997

>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}

Probab=99.88  E-value=6.4e-24  Score=175.07  Aligned_cols=90  Identities=17%  Similarity=0.119  Sum_probs=79.8

Q ss_pred             hhhhhhhcCCCchHHh-HHHHHHHHHHhccccccccccceEEEEcCchHHHhcCcC--------CCC--CCCeeeeCCcc
Q psy7740          75 LEFNILLCCTGSVATI-KLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDL--------PHK--PNIRFYSDDDE  143 (184)
Q Consensus        75 LGf~illg~tGSiaa~-k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~~--------~l~--~~~~V~~d~de  143 (184)
                      .|+||++|+|||++++ |++++++.|++.|  +      +|+||+|++|++|++++        .++  ++++|+++.  
T Consensus         6 ~~k~I~lgiTGs~aa~~k~~~ll~~L~~~g--~------eV~vv~T~~A~~~i~~~~~~~~~~~~l~~l~g~~v~~~~--   75 (201)
T 3lqk_A            6 AGKHVGFGLTGSHCTYHEVLPQMERLVELG--A------KVTPFVTHTVQTTDTKFGESSEWINKIKQITEEPIVDSM--   75 (201)
T ss_dssp             TTCEEEEECCSCGGGGGGTHHHHHHHHHTT--C------EEEEECSSCSCCTTCCTTCSCHHHHHHHHHCCSCCBCSH--
T ss_pred             CCCEEEEEEEChHHHHHHHHHHHHHHhhCC--C------EEEEEEChhHHHHHHHhhchhHHHHHHHHHhCCCeEeec--
Confidence            4679999999999999 9999999999998  8      99999999999999998        443  567777662  


Q ss_pred             chhcccCCCCcccccccccccEEEEcccccHHHHHHhcC
Q psy7740         144 WISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLATY  182 (184)
Q Consensus       144 ~~~~~~~~~~~~Hi~l~~~aD~~VVaPaSaNTlAKiA~~  182 (184)
                      |        ..+||++++|+|+|||||||||||||||+|
T Consensus        76 ~--------~~~hi~~s~~aD~mvIaP~TanTlAkiA~G  106 (201)
T 3lqk_A           76 V--------KAEPFGPKTPLDCMVIAPMTGNSTSKFANA  106 (201)
T ss_dssp             H--------HHGGGTTTSCCSEEEEEEECHHHHHHHHTT
T ss_pred             C--------cccccccccccCEEEEccCCHHHHHHHHCc
Confidence            2        257999999999999999999999999997

>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}

Probab=99.87  E-value=2e-23  Score=172.94  Aligned_cols=90  Identities=18%  Similarity=0.118  Sum_probs=71.8

Q ss_pred             hhhhhhhcCCCchHHhH-HHHHHHHHHhccccccccccceEEEEcCchHH----HhcCc----CCCC--CCCeeeeCCcc
Q psy7740          75 LEFNILLCCTGSVATIK-LPELIEQIEQLQYEFNKIMIINLNVVMTKHAF----HFVPD----LPHK--PNIRFYSDDDE  143 (184)
Q Consensus        75 LGf~illg~tGSiaa~k-~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~----~fv~~----~~l~--~~~~V~~d~de  143 (184)
                      .|++|++|+|||+++|| ++++++.|++.|  +      +|+||+|++|+    +|+++    ..++  ++.+|++|.  
T Consensus         4 ~~k~IllgiTGsiaayk~~~~ll~~L~~~g--~------eV~vv~T~~A~~vl~~f~~~~~~~~~l~~ltg~~v~~~~--   73 (207)
T 3mcu_A            4 KGKRIGFGFTGSHCTYEEVMPHLEKLIAEG--A------EVRPVVSYTVQSTNTRFGEGAEWIKKIEEITGFKAINSI--   73 (207)
T ss_dssp             TTCEEEEEECSCGGGGTTSHHHHHHHHHTT--C------EEEEEECC------------CHHHHHHHHHSSSCCBCSH--
T ss_pred             CCCEEEEEEEChHHHHHHHHHHHHHHHhCC--C------EEEEEEehHHHHHHHHhcCchhHHHHHHHHhCCceEeec--
Confidence            35799999999999998 999999999998  8      99999999999    77777    3444  678888662  


Q ss_pred             chhcccCCCCcccccccccccEEEEcccccHHHHHHhcC
Q psy7740         144 WISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLATY  182 (184)
Q Consensus       144 ~~~~~~~~~~~~Hi~l~~~aD~~VVaPaSaNTlAKiA~~  182 (184)
                      |        ..+|+++++|+|+|||||||||||||||+|
T Consensus        74 ~--------~~~hi~ls~~aD~mvIaPaTanTlAKiA~G  104 (207)
T 3mcu_A           74 V--------GAEPLGPKIPLDCMVIAPLTGNSMSKFANA  104 (207)
T ss_dssp             H--------HHGGGTTTSCCSEEEEEEECHHHHHHHHTT
T ss_pred             C--------cccccccchhcCEEEEecCCHHHHHHHHcc
Confidence            2        146999999999999999999999999997

>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}

Probab=99.86  E-value=1.4e-22  Score=165.49  Aligned_cols=88  Identities=23%  Similarity=0.349  Sum_probs=74.8

Q ss_pred             hhhhhcCCCchHHhHHHHHHHHHHhccccccccccceEEEEcCchHHHhcCcCC---CC------CCCeeeeCCccchhc
Q psy7740          77 FNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLP---HK------PNIRFYSDDDEWISW  147 (184)
Q Consensus        77 f~illg~tGSiaa~k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~~~---l~------~~~~V~~d~de~~~~  147 (184)
                      +||++|+|||+|++|++++++.|++.|  +      +|+||+|++|++|++++.   ++      ++.+||++.      
T Consensus         2 k~IllgvTGs~aa~k~~~l~~~L~~~g--~------~V~vv~T~~A~~~i~~e~~~~~~~l~~~l~~~~v~~~~------   67 (189)
T 2ejb_A            2 QKIALCITGASGVIYGIKLLQVLEELD--F------SVDLVISRNAKVVLKEEHSLTFEEVLKGLKNVRIHEEN------   67 (189)
T ss_dssp             CEEEEEECSSTTHHHHHHHHHHHHHTT--C------EEEEEECHHHHHHHHHC-------CCCCCSSEEEEETT------
T ss_pred             CEEEEEEECHHHHHHHHHHHHHHHHCC--C------EEEEEEChhHHHHhhHHhCCCHHHHHHHhCCCeEecCC------
Confidence            479999999999999999999999988  7      999999999999999952   22      134555442      


Q ss_pred             ccCCCCccccccc---ccccEEEEcccccHHHHHHhcC
Q psy7740         148 EKRGDPVLHIELS---KWCDIIVLAPLDANTLAKLATY  182 (184)
Q Consensus       148 ~~~~~~~~Hi~l~---~~aD~~VVaPaSaNTlAKiA~~  182 (184)
                          +..+||+++   +|+|+|||||||||||||||+|
T Consensus        68 ----~~~~hi~~~s~~~~aD~mvIaPaTanTlAkiA~G  101 (189)
T 2ejb_A           68 ----DFTSPLASGSRLVHYRGVYVVPCSTNTLSCIANG  101 (189)
T ss_dssp             ----CTTSGGGCHHHHTTEEEEEEEEECHHHHHHHHHT
T ss_pred             ----CCcCCccccccccccCEEEEecCCHHHHHHHHcC
Confidence                346899998   9999999999999999999997

>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1

Probab=99.83  E-value=9e-22  Score=161.88  Aligned_cols=88  Identities=14%  Similarity=0.092  Sum_probs=71.8

Q ss_pred             hhhhcCCCchHHhHHHHHHHHHHhc-cccccccccceEEEEcCchHHHhcCcCC------CC-CCCeeeeCCccchhccc
Q psy7740          78 NILLCCTGSVATIKLPELIEQIEQL-QYEFNKIMIINLNVVMTKHAFHFVPDLP------HK-PNIRFYSDDDEWISWEK  149 (184)
Q Consensus        78 ~illg~tGSiaa~k~~~li~~L~~~-g~~~~~~~~~~V~VilT~sA~~fv~~~~------l~-~~~~V~~d~de~~~~~~  149 (184)
                      ||++|+|||+|++|++++++.|++. |  +      +|+||+|++|++|++++.      +. ....++... +|     
T Consensus         2 ~IllgvTGsiaa~k~~~ll~~L~~~~g--~------~V~vv~T~~A~~fi~~~tg~~v~~~~~l~~~~~~~~-~l-----   67 (197)
T 1sbz_A            2 KLIVGMTGATGAPLGVALLQALREMPN--V------ETHLVMSKWAKTTIELETPYSARDVAALADFSHNPA-DQ-----   67 (197)
T ss_dssp             EEEEEECSSSCHHHHHHHHHHHHTCTT--C------EEEEEECHHHHHHHHHHSSCCHHHHHHTSSEEECTT-CT-----
T ss_pred             EEEEEEeChHHHHHHHHHHHHHHhccC--C------EEEEEECchHHHHhHHHHCCCHHHHHHhcCcccCch-hh-----
Confidence            7899999999999999999999998 7  7      999999999999999874      11 112233222 22     


Q ss_pred             CCCCcccccccccccEEEEcccccHHHHHHhcC
Q psy7740         150 RGDPVLHIELSKWCDIIVLAPLDANTLAKLATY  182 (184)
Q Consensus       150 ~~~~~~Hi~l~~~aD~~VVaPaSaNTlAKiA~~  182 (184)
                       ++++.|++  +|+|+|||||||||||||||+|
T Consensus        68 -~api~sgs--~~aD~mvIaPaTanTlAkiA~G   97 (197)
T 1sbz_A           68 -AATISSGS--FRTDGMIVIPCSMKTLAGIRAG   97 (197)
T ss_dssp             -TSGGGSTT--SCCSEEEEEEECHHHHHHHHHT
T ss_pred             -cccccCCC--cccCEEEEecCCHhHHHHHHcc
Confidence             45666664  7999999999999999999997

>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1

Probab=94.11  E-value=0.058  Score=32.77  Aligned_cols=34  Identities=21%  Similarity=0.486  Sum_probs=31.1

Q ss_pred             ccHHHHHHHHHHHhhcCCCChhhHHHhhhhhhcc
Q psy7740          28 DCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCR   61 (184)
Q Consensus        28 ~c~~~~~~y~~cl~~~~~~~~~cr~~~k~yl~cr   61 (184)
                      -|+.....+..||.+|+++.++|......|=+|-
T Consensus         2 pC~~~a~a~q~CL~~n~~d~skCq~~id~l~~Cc   35 (38)
T 1ei0_A            2 PCQKQAAEIQKCLQANSYLESKCQAVIQELKKCA   35 (38)
T ss_dssp             CSHHHHHHHHHHHHHTTTCGGGTHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence            4899999999999999999999999999988773

>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A

Probab=92.72  E-value=0.086  Score=36.08  Aligned_cols=37  Identities=19%  Similarity=0.441  Sum_probs=34.4

Q ss_pred             CccHHHHHHHHHHHhhcCCCChhhHHHhhhhhhccch
Q psy7740          27 GDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCRME   63 (184)
Q Consensus        27 ~~c~~~~~~y~~cl~~~~~~~~~cr~~~k~yl~crm~   63 (184)
                      .-|+.+.-.+..||.+|+++.++|.....+|=+|+-.
T Consensus         5 dPC~~~AcaiQ~CL~~N~yd~skCq~~id~L~eCc~~   41 (68)
T 1hp8_A            5 DPCQKQACEIQKCLQANSYMESKCQAVIQELRKCCAQ   41 (68)
T ss_dssp             CTTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred             CchHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999999999999863

>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}

Probab=92.63  E-value=0.055  Score=40.30  Aligned_cols=36  Identities=17%  Similarity=0.614  Sum_probs=33.3

Q ss_pred             CccHHHHHHHHHHHhhcCCCChhhHHHhhhhhhccc
Q psy7740          27 GDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCRM   62 (184)
Q Consensus        27 ~~c~~~~~~y~~cl~~~~~~~~~cr~~~k~yl~crm   62 (184)
                      ..|.+.+..|-.||+.|+.+-..||.+-+++..|-=
T Consensus        59 ~~C~~ef~~y~~CL~~n~~~~~~Cr~~~~~f~~Cae   94 (113)
T 2lql_A           59 QACAQPFEAFEECLRQNEAAVGNCAEHMRRFLQCAE   94 (113)
T ss_dssp             HHTHHHHHHHHHHHHHCTTCTTTCCSHHHHHHHHHT
T ss_pred             HHhHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHH
Confidence            469999999999999999988999999999999973

>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}

Probab=82.89  E-value=0.33  Score=36.03  Aligned_cols=42  Identities=14%  Similarity=0.279  Sum_probs=31.1

Q ss_pred             CCCCCCc-cHHHHHHHHHHHhhcCC-CChhhHHHhhhhhhccch
Q psy7740          22 PLDHYGD-CKAFMTKYMICIKKNNS-DSSACRDEIKDYLGCRME   63 (184)
Q Consensus        22 pldh~~~-c~~~~~~y~~cl~~~~~-~~~~cr~~~k~yl~crm~   63 (184)
                      -++|-+- |...+..||.|..+|+. +..+|..+.++--.|-.+
T Consensus         7 a~~~vak~C~~~~~~f~~C~~~~~~~dp~~Cl~eg~~vt~Ca~~   50 (113)
T 2lql_A            7 ALEVTARYCGRELEQYGQCVAAKPESWQRDCHYLKMSIAQCTSS   50 (113)
T ss_dssp             -------CCHHHHHHHHHHHHHCTTHHHHTCSHHHHHHHHHHHT
T ss_pred             HHHHHHHHccHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhc
Confidence            3567774 99999999999998875 578999999999999755

>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}

Probab=80.39  E-value=1.6  Score=30.92  Aligned_cols=37  Identities=24%  Similarity=0.445  Sum_probs=33.9

Q ss_pred             CccHHHHHHHHHHHhhcCCCChhhHHHhhhhhhccch
Q psy7740          27 GDCKAFMTKYMICIKKNNSDSSACRDEIKDYLGCRME   63 (184)
Q Consensus        27 ~~c~~~~~~y~~cl~~~~~~~~~cr~~~k~yl~crm~   63 (184)
                      .-|.+.-..-++||.+|+.+-++|-+.=.+|=.|+=.
T Consensus        14 nPC~~e~~~S~kCL~~n~yDr~~C~~yF~~Yk~CKk~   50 (85)
T 2lqt_A           14 NPCLSESDASTRCLDENNYDRERCSTYFLRYKNCRRF   50 (85)
T ss_dssp             CCCHHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH
Confidence            4599999999999999999999999999999999643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	184
d1mvla_	182	c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decar	9e-19
d1qzua_	181	c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decar	5e-17
d1p3y1_	183	c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [Ta	7e-15
d1sbza_	186	c.34.1.1 (A:) Probable aromatic acid decarboxylase	2e-12
d1g5qa_	174	c.34.1.1 (A:) Epidermin modifying enzyme (peptidyl	2e-11

>d1mvla_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 182

class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 77.1 bits (189), Expect = 9e-19
 Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 9/101 (8%)

Query: 79  ILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRFY 138
           +LL  +GSVA IK   L     +            +  V+TK + HF+  L     +  Y
Sbjct: 4   VLLAASGSVAAIKFGNLCHCFTEW---------AEVRAVVTKSSLHFLDKLSLPQEVTLY 54

Query: 139 SDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKL 179
           +D+DEW SW K GDPVLHIEL +W D++V+APL ANTL K+
Sbjct: 55  TDEDEWSSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKI 95

>d1qzua_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) {Human (Homo sapiens) [TaxId: 9606]} Length = 181

class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (178), Expect = 5e-17
 Identities = 45/106 (42%), Positives = 66/106 (62%), Gaps = 9/106 (8%)

Query: 77  FNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIR 136
           F++L+  TGSVA +KLP L+ ++  +         + + VV T+ A HF    P    + 
Sbjct: 5   FHVLVGVTGSVAALKLPLLVSKLLDIPG-------LEVAVVTTERAKHFYS--PQDIPVT 55

Query: 137 FYSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLATY 182
            YSD DEW  W+ R DPVLHI+L +W D++++APLDANTL K+A+ 
Sbjct: 56  LYSDADEWEMWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASG 101

>d1p3y1_ c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]} Length = 183

class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: MrsD
species: Bacillus sp. hil-y85/54728 [TaxId: 69002]

 Score = 66.7 bits (162), Expect = 7e-15
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 13/105 (12%)

Query: 78  NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRF 137
            +L+   GS++++ +   +   +    E          VVMTK A   +P          
Sbjct: 8   KLLIGICGSISSVGISSYLLYFKSFFKEI--------RVVMTKTAEDLIPAHTVS----- 54

Query: 138 YSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLATY 182
           Y  D  +    + G    H+E+ +W DI  + P  AN L + A  
Sbjct: 55  YFCDHVYSEHGENGKRHSHVEIGRWADIYCIIPATANILGQTANG 99

>d1sbza_ c.34.1.1 (A:) Probable aromatic acid decarboxylase Pad1 {Escherichia coli O157:H7 [TaxId: 83334]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: Probable aromatic acid decarboxylase Pad1
species: Escherichia coli O157:H7 [TaxId: 83334]

 Score = 60.4 bits (146), Expect = 2e-12
 Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 9/103 (8%)

Query: 79  ILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRFY 138
           +++  TG+        L++ + ++         +  ++VM+K A   +            
Sbjct: 3   LIVGMTGATGAPLGVALLQALREMPN-------VETHLVMSKWAKTTIELETPYSARDVA 55

Query: 139 SDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLAT 181
           +  D   +   +         S   D +++ P    TLA +  
Sbjct: 56  ALADFSHNPADQAAT--ISSGSFRTDGMIVIPCSMKTLAGIRA 96

>d1g5qa_ c.34.1.1 (A:) Epidermin modifying enzyme (peptidyl-cysteine decarboxylase) EpiD {Staphylococcus epidermidis [TaxId: 1282]} Length = 174

class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: Epidermin modifying enzyme (peptidyl-cysteine decarboxylase) EpiD
species: Staphylococcus epidermidis [TaxId: 1282]

 Score = 57.8 bits (139), Expect = 2e-11
 Identities = 19/105 (18%), Positives = 43/105 (40%), Gaps = 15/105 (14%)

Query: 78  NILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRF 137
            +L+C T S+  I +   I ++        K     +N++ +  + +F+     K     
Sbjct: 4   KLLICATASINVININHYIVEL--------KQHFDEVNILFSPSSKNFINTDVLKLFCDN 55

Query: 138 YSDDDEWISWEKRGDPVLHIELSKWCDIIVLAPLDANTLAKLATY 182
             D+ +          + +I + +  + I++ P  ANT+ K+A  
Sbjct: 56  LYDEIKD-------PLLNNINIVENHEYILVLPASANTINKIANG 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	184
d1mvla_	182	4'-phosphopantothenoylcysteine decarboxylase (PPC	99.93
d1qzua_	181	4'-phosphopantothenoylcysteine decarboxylase (PPC	99.92
d1g5qa_	174	Epidermin modifying enzyme (peptidyl-cysteine deca	99.91
d1p3y1_	183	MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]}	99.9
d1sbza_	186	Probable aromatic acid decarboxylase Pad1 {Escheri	99.85

>d1mvla_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=3e-27  Score=190.56  Aligned_cols=97  Identities=45%  Similarity=0.809  Sum_probs=86.7

Q ss_pred             hhhhhcCCCchHHhHHHHHHHHHHhccccccccccceEEEEcCchHHHhcCcCCCCCCCeeeeCCccchhcccCCCCccc
Q psy7740          77 FNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHKPNIRFYSDDDEWISWEKRGDPVLH  156 (184)
Q Consensus        77 f~illg~tGSiaa~k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~~~l~~~~~V~~d~de~~~~~~~~~~~~H  156 (184)
                      .||++|+|||+|++|+++|++.|++ |  +      +|+||+|++|++|+++.+++.....+.+.++|..|.+.++++.|
T Consensus         2 ~kIllgvtGsiAayk~~~L~r~L~~-~--~------~V~vv~T~~A~~fi~~~~l~~~~~~~~~~~~~~~~~~~~~~~~H   72 (182)
T d1mvla_           2 PRVLLAASGSVAAIKFGNLCHCFTE-W--A------EVRAVVTKSSLHFLDKLSLPQEVTLYTDEDEWSSWNKIGDPVLH   72 (182)
T ss_dssp             CEEEEEECSSGGGGGHHHHHHHHHT-T--S------EEEEEECTGGGGTCCGGGSCTTCEEECTTHHHHHCSSTTSCCHH
T ss_pred             CEEEEEEecHHHHHHHHHHHHHHhc-C--C------eEEEEEchhHHHhhhhhhhceeeeeeecccccccccccCCchhh
Confidence            5899999999999999999999976 6  6      99999999999999999998555666666678777666677899


Q ss_pred             ccccccccEEEEcccccHHHHHHhcC
Q psy7740         157 IELSKWCDIIVLAPLDANTLAKLATY  182 (184)
Q Consensus       157 i~l~~~aD~~VVaPaSaNTlAKiA~~  182 (184)
                      |+|++|+|+|||||||||||||+|+|
T Consensus        73 i~la~~aD~~iVaPATANtiaK~A~G   98 (182)
T d1mvla_          73 IELRRWADVLVIAPLSANTLGKIAGG   98 (182)
T ss_dssp             HHHHHHCSEEEEEEECHHHHHHHHHT
T ss_pred             hhhhccccEEEEEeccHHHHHHHHcC
Confidence            99999999999999999999999997

>d1qzua_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.6e-26  Score=186.15  Aligned_cols=95  Identities=41%  Similarity=0.702  Sum_probs=79.9

Q ss_pred             hhhhhhcCCCchHHhHHHHHHHHHHh-ccccccccccceEEEEcCchHHHhcCcCCCC--CCCeeeeCCccchhcccCCC
Q psy7740          76 EFNILLCCTGSVATIKLPELIEQIEQ-LQYEFNKIMIINLNVVMTKHAFHFVPDLPHK--PNIRFYSDDDEWISWEKRGD  152 (184)
Q Consensus        76 Gf~illg~tGSiaa~k~~~li~~L~~-~g~~~~~~~~~~V~VilT~sA~~fv~~~~l~--~~~~V~~d~de~~~~~~~~~  152 (184)
                      ++||++|+|||||+||+++++++|++ .|  +      +|+|++|++|++|++++.++  ++++++.    |..|.+.+.
T Consensus         4 k~~Ill~vtGSIAayk~~~lv~~L~~~~g--~------~V~vi~T~~A~~Fv~p~~~~~~~~~~~~~----~~~~~~~~~   71 (181)
T d1qzua_           4 KFHVLVGVTGSVAALKLPLLVSKLLDIPG--L------EVAVVTTERAKHFYSPQDIPVTLYSDADE----WEMWKSRSD   71 (181)
T ss_dssp             SEEEEEEECSSGGGGTHHHHHHHHC---C--E------EEEEEECTGGGGSSCGGGSCSCEECHHHH----HHTCSSTTS
T ss_pred             CCEEEEEEecHHHHHHHHHHHHHHHHHcC--C------EEEEEEChHHHhhcCcccceeeccCCccc----ccccccccc
Confidence            35899999999999999999999977 46  7      99999999999999999886  3444433    223444456


Q ss_pred             CcccccccccccEEEEcccccHHHHHHhcC
Q psy7740         153 PVLHIELSKWCDIIVLAPLDANTLAKLATY  182 (184)
Q Consensus       153 ~~~Hi~l~~~aD~~VVaPaSaNTlAKiA~~  182 (184)
                      ++.||+|++|+|+|||||||||||||+|+|
T Consensus        72 ~~~Hi~La~~aDl~lVaPATANtiaK~A~G  101 (181)
T d1qzua_          72 PVLHIDLRRWADLLLVAPLDANTLGKVASG  101 (181)
T ss_dssp             CCHHHHHHTTCSEEEEEEECHHHHHHHHTT
T ss_pred             ccceEEecccccEEEEEeCcHHHHHHHhcc
Confidence            789999999999999999999999999997

>d1g5qa_ c.34.1.1 (A:) Epidermin modifying enzyme (peptidyl-cysteine decarboxylase) EpiD {Staphylococcus epidermidis [TaxId: 1282]}

class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: Epidermin modifying enzyme (peptidyl-cysteine decarboxylase) EpiD
species: Staphylococcus epidermidis [TaxId: 1282]

Probab=99.91  E-value=1.3e-25  Score=179.67  Aligned_cols=90  Identities=21%  Similarity=0.320  Sum_probs=79.0

Q ss_pred             hhhhhcCCCchHHhHHHHHHHHHHhccccccccccceEEEEcCchHHHhcCcCCCC-CCCeeeeCCccchhcccCCCCcc
Q psy7740          77 FNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHK-PNIRFYSDDDEWISWEKRGDPVL  155 (184)
Q Consensus        77 f~illg~tGSiaa~k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~~~l~-~~~~V~~d~de~~~~~~~~~~~~  155 (184)
                      .||++|+|||+|++|+++++++|++.|  +      +|+|++|++|++|++++.++ ....+|++..+        ...+
T Consensus         3 ~kIll~vtGsiaa~k~~~li~~L~~~g--~------~V~vv~T~sA~~fv~~~~l~~~~~~~~~~~~~--------~~~~   66 (174)
T d1g5qa_           3 GKLLICATASINVININHYIVELKQHF--D------EVNILFSPSSKNFINTDVLKLFCDNLYDEIKD--------PLLN   66 (174)
T ss_dssp             SCEEEEECSCGGGGGHHHHHHHHTTTB--S------CEEEEECGGGGGTSCGGGGGGTSSCEECTTTC--------TTCC
T ss_pred             CeEEEEEECHHHHHHHHHHHHHHHHCC--C------eEEEEEehhhhhhccHhHHhHhhCcccccccc--------cccc
Confidence            369999999999999999999999998  7      99999999999999999987 23346655322        2368


Q ss_pred             cccccccccEEEEcccccHHHHHHhcC
Q psy7740         156 HIELSKWCDIIVLAPLDANTLAKLATY  182 (184)
Q Consensus       156 Hi~l~~~aD~~VVaPaSaNTlAKiA~~  182 (184)
                      ||++++|+|+|||||||||||||+|+|
T Consensus        67 hi~l~~~aD~~lVaPaTaNtlaKiA~G   93 (174)
T d1g5qa_          67 NINIVENHEYILVLPASANTINKIANG   93 (174)
T ss_dssp             HHHHHHTCSEEEEEEECHHHHHHHHTT
T ss_pred             ceeeccccceEEEEecCHHHHHHHHHh
Confidence            999999999999999999999999998

>d1p3y1_ c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]}

class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: MrsD
species: Bacillus sp. hil-y85/54728 [TaxId: 69002]

Probab=99.90  E-value=2e-25  Score=179.83  Aligned_cols=93  Identities=26%  Similarity=0.433  Sum_probs=82.1

Q ss_pred             hhhhhhcCCCchHHhHHHHHHHHHHhccccccccccceEEEEcCchHHHhcCcCCCC-CCCeeeeCCccchhcccCCCCc
Q psy7740          76 EFNILLCCTGSVATIKLPELIEQIEQLQYEFNKIMIINLNVVMTKHAFHFVPDLPHK-PNIRFYSDDDEWISWEKRGDPV  154 (184)
Q Consensus        76 Gf~illg~tGSiaa~k~~~li~~L~~~g~~~~~~~~~~V~VilT~sA~~fv~~~~l~-~~~~V~~d~de~~~~~~~~~~~  154 (184)
                      |+||++|||||+|+++++++++.|++.|  +      +|+||+|++|++|++++.++ ...++|+|.++      .+...
T Consensus         6 ~KkIllgvTGsiaa~k~~~l~~~L~~~g--~------eV~vv~T~~A~~fi~~~~~~~l~~~~~~~~~~------~~~~~   71 (183)
T d1p3y1_           6 DKKLLIGICGSISSVGISSYLLYFKSFF--K------EIRVVMTKTAEDLIPAHTVSYFCDHVYSEHGE------NGKRH   71 (183)
T ss_dssp             GCEEEEEECSCGGGGGTHHHHHHHTTTS--S------EEEEEECHHHHHHSCHHHHGGGSSEEECTTCS------SSCCC
T ss_pred             CCEEEEEEeCHHHHHHHHHHHHHHHHCC--C------eEEEEEEcchhhhccHhHHHHhccceeecccc------ccccc
Confidence            7899999999999999999999999988  7      99999999999999998876 23467776322      23457


Q ss_pred             ccccccccccEEEEcccccHHHHHHhcC
Q psy7740         155 LHIELSKWCDIIVLAPLDANTLAKLATY  182 (184)
Q Consensus       155 ~Hi~l~~~aD~~VVaPaSaNTlAKiA~~  182 (184)
                      .|+++++|+|+|||||||+|||||+|+|
T Consensus        72 ~Hi~l~~~aD~~vIaPaTaNtlaKiA~G   99 (183)
T d1p3y1_          72 SHVEIGRWADIYCIIPATANILGQTANG   99 (183)
T ss_dssp             CHHHHHHHCSEEEEEEECHHHHHHHHTT
T ss_pred             CceeccccccEEEEEecCHHHHHHHHhh
Confidence            8999999999999999999999999998

>d1sbza_ c.34.1.1 (A:) Probable aromatic acid decarboxylase Pad1 {Escherichia coli O157:H7 [TaxId: 83334]}

class: Alpha and beta proteins (a/b)
fold: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
superfamily: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
family: Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
domain: Probable aromatic acid decarboxylase Pad1
species: Escherichia coli O157:H7 [TaxId: 83334]

Probab=99.85  E-value=6.6e-23  Score=164.57  Aligned_cols=93  Identities=15%  Similarity=0.100  Sum_probs=75.5

Q ss_pred             hhhhcCCCchHHhHHHHHHHHHHhc-cccccccccceEEEEcCchHHHhcCcCCCC--CCCeeeeCCccchhcccCCCCc
Q psy7740          78 NILLCCTGSVATIKLPELIEQIEQL-QYEFNKIMIINLNVVMTKHAFHFVPDLPHK--PNIRFYSDDDEWISWEKRGDPV  154 (184)
Q Consensus        78 ~illg~tGSiaa~k~~~li~~L~~~-g~~~~~~~~~~V~VilT~sA~~fv~~~~l~--~~~~V~~d~de~~~~~~~~~~~  154 (184)
                      ||++|+|||++++++.++++.|++. |  +      +|+|++|++|++|++++.+.  .+.+++.+.  |..+  .....
T Consensus         2 rIllgITGas~a~~a~~ll~~L~~~~g--~------~V~vv~T~~A~~~i~~~~~~~~~~~~~~~~~--~~~~--~~~~~   69 (186)
T d1sbza_           2 KLIVGMTGATGAPLGVALLQALREMPN--V------ETHLVMSKWAKTTIELETPYSARDVAALADF--SHNP--ADQAA   69 (186)
T ss_dssp             EEEEEECSSSCHHHHHHHHHHHHTCTT--C------EEEEEECHHHHHHHHHHSSCCHHHHHHTSSE--EECT--TCTTS
T ss_pred             EEEEEEccHHHHHHHHHHHHHHHHhcC--C------EEEEEECchHHhhhhHhhhhhhhcCceeeec--ccCc--cccCC
Confidence            6899999999999999999999985 5  7      99999999999999998875  233333331  1111  12246


Q ss_pred             ccccccccccEEEEcccccHHHHHHhcC
Q psy7740         155 LHIELSKWCDIIVLAPLDANTLAKLATY  182 (184)
Q Consensus       155 ~Hi~l~~~aD~~VVaPaSaNTlAKiA~~  182 (184)
                      .|+++++|+|+|||||||||||||||||
T Consensus        70 ~~~sls~~aD~~vIaPaTanTlAKiA~G   97 (186)
T d1sbza_          70 TISSGSFRTDGMIVIPCSMKTLAGIRAG   97 (186)
T ss_dssp             GGGSTTSCCSEEEEEEECHHHHHHHHHT
T ss_pred             ccccccccccEEEEccccHhHHHHHHcC
Confidence            7999999999999999999999999997