Psyllid ID: psy7748

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
Protein Sequence
MASGNTGDRTWGSSAWNLAATEVYGRPSTNLNDFIELTQSDLKDDKYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGLPCFLTHSFIGNAKHQLLAALLKLKILSPEEINQALNAKPVPVKVDTSR
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccccEEEEEEcccccEEEEEEcccEEEEEEEcccccccccccccccccHHHHHHHHHHHHHccccccccccccEEEcccccccEEEEEEEEEEccccHHHHHHHccccccccccccccccccccEEcccccccHHHHHHHHHHHcHHHHHHHHHHHcccccHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHccccccHHHHHHHHHcHHHHHHccccccEEEEEEEccccHHHcccccHHHEEEEEEEcccccccccccccccccHHHHHHHHHHHHHccccccccccccccEccccccccEEEEEEEEEccHHHHHHHHHHcccHHHcccEEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHcc
Coil and Loop (DISEMBL)
masgntgdrtwgssawnlaatevygrpstnlndFIELTQsdlkddkyksgyhashCMIFAYNDDKIFATYTARANVLMQMRFdgyigfpgglvdagespLEALNRELNEeinlnpkykvkdsdlvCIHYSQSKKIILHFYALQVEKTDVLEIEKGaltshdygvevlgtvrvplytmgdgfrglpcflthsfiGNAKHQLLAALLKLKILSPEEINqalnakpvpvkvdtsr
Flexible Loop (DISEMBL)
masgntgdrtwgssawNLAATEvygrpstnlnDFIELTQSDLKDDKYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEInlnpkykvkdsDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGaltshdygvevLGTVRVPLYTMGDGFRGLPCFLTHSFIGNAKHQLLAALLKLKILSPEEinqalnakpvpvkvdtsr
Low Complexity Region (SEG)
MASGNTGDRTWGSSAWNLAATEVYGRPSTNLNDFIELTQSDLKDDKYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPlealnrelneeinlnPKYKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGLPCFLTHSFIGNakhqllaallklkilSPEEINQALNAKPVPVKVDTSR
Disordered region (IsUnstruct)
**************************************************YHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGLPCFLTHSFIGNAKHQLLAALLKLKILSPE*******************
Disordered Region (DISOPRED)
**********WGSSAWNLAATEVYGRPSTNLNDFIELTQSDLKDDKYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGLPCFLTHSFIGNAKHQLLAALLKLKILSPEEIN****************
Disordered Region (DISEMBL)
**********WGSSAWNLAATEVYGRPSTNLNDFIELTQSDLKDDKYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGLPCFLTHSFIGNAKHQLLAALLKLKILSPEEINQALNAKPVPVKVDTSR
Disordered Region (DISPRO)
**********WGSSAWNLAATEVYGRPSTNLNDFIELTQSDLKDDKYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGLPCFLTHSFIGNAKHQLLAALLKLKILSPEEINQALNAKPVPV******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASGNTGDRTWGSSAWNLAATEVYGRPSTNLNDFIELTQSDLKDDKYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGLPCFLTHSFIGNAKHQLLAALLKLKILSPEEINQALNAKPVPVKVDTSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	232	2.2.26 [Sep-21-2011]
Q6P3D0	195	U8 snoRNA-decapping enzym	yes	N/A	0.693	0.825	0.472	8e-35
Q96DE0	195	U8 snoRNA-decapping enzym	yes	N/A	0.724	0.861	0.444	1e-34
A1A4Q9	195	U8 snoRNA-decapping enzym	yes	N/A	0.693	0.825	0.441	8e-33
Q2V8X7	195	U8 snoRNA-decapping enzym	N/A	N/A	0.693	0.825	0.441	2e-32
Q9IAY5	314	Protein syndesmos OS=Gall	yes	N/A	0.745	0.550	0.415	1e-29
Q6TEC1	212	U8 snoRNA-decapping enzym	N/A	N/A	0.737	0.806	0.418	4e-27
Q9BRJ7	211	Protein syndesmos OS=Homo	no	N/A	0.719	0.791	0.401	2e-26
Q8VHN8	211	Protein syndesmos OS=Mus	no	N/A	0.715	0.786	0.378	3e-26
B2SFE8	155	RNA pyrophosphohydrolase	yes	N/A	0.258	0.387	0.376	6e-05
C5CXX0	223	RNA pyrophosphohydrolase	yes	N/A	0.331	0.345	0.336	0.0004

>sp|Q6P3D0|NUD16_MOUSE U8 snoRNA-decapping enzyme OS=Mus musculus GN=Nudt16 PE=2 SV=1

 Score =  147 bits (370), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 77/163 (47%), Positives = 103/163 (63%), Gaps = 2/163 (1%)

Query: 52  HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLE-ALNRELNEE 110
           HA H +++A +  K+F     R  VLMQMRFDG +GFPGG VDA +S LE  LNREL EE
Sbjct: 21  HACHALLYAPDPRKLFGRIPMRFAVLMQMRFDGRLGFPGGFVDAQDSCLEDGLNRELREE 80

Query: 111 I-NLNPKYKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGT 169
           +      ++V+ SD    H +   +++ HFYA ++    +  +E  A  + D+G+EVLG 
Sbjct: 81  LGEAMSAFRVERSDYRSSHIAARPRVVAHFYAKRLTLEQLQAVEARAPQAKDHGLEVLGL 140

Query: 170 VRVPLYTMGDGFRGLPCFLTHSFIGNAKHQLLAALLKLKILSP 212
           VRVPLY + DG  GLP FL +SFIG A+ QLL AL  LK+L P
Sbjct: 141 VRVPLYVLRDGEGGLPAFLENSFIGAAREQLLEALQDLKLLDP 183

RNA-decapping enzyme that binds specifically to U8 snoRNA. Part of the U8 snoRNP complex that is required for the accumulation of mature 5.8S and 28S rRNA. Has diphosphatase activity and removes m7G and m227G caps from U8 snoRNA. Has broad substrate specificity with manganese or cobalt as cofactor and can act on various RNA species (in vitro).
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: 6EC: 2

>sp|Q96DE0|NUD16_HUMAN U8 snoRNA-decapping enzyme OS=Homo sapiens GN=NUDT16 PE=1 SV=2

 Score =  146 bits (368), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/171 (44%), Positives = 107/171 (62%), Gaps = 3/171 (1%)

Query: 49  SGY-HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLE-ALNRE 106
           SG+ HA H +++A +   +F     R  +LMQMRFDG +GFPGG VD  +  LE  LNRE
Sbjct: 17  SGWRHACHALLYAPDPGMLFGRIPLRYAILMQMRFDGRLGFPGGFVDTQDRSLEDGLNRE 76

Query: 107 LNEEIN-LNPKYKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVE 165
           L EE+      ++V+ +D    H     +++ HFYA ++   ++L +E GA  + D+G+E
Sbjct: 77  LREELGEAAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLTLEELLAVEAGATRAKDHGLE 136

Query: 166 VLGTVRVPLYTMGDGFRGLPCFLTHSFIGNAKHQLLAALLKLKILSPEEIN 216
           VLG VRVPLYT+ DG  GLP FL +SFIG+A+ QLL AL  L +L    I+
Sbjct: 137 VLGLVRVPLYTLRDGVGGLPTFLENSFIGSAREQLLEALQDLGLLQSGSIS 187

RNA-decapping enzyme that binds specifically to U8 snoRNA. Part of the U8 snoRNP complex that is required for the accumulation of mature 5.8S and 28S rRNA. Has diphosphatase activity and removes m7G and m227G caps from U8 snoRNA. Has broad substrate specificity with manganese or cobalt as cofactor and can act on various RNA species (in vitro).

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 2

>sp|A1A4Q9|NUD16_BOVIN U8 snoRNA-decapping enzyme OS=Bos taurus GN=NUDT16 PE=2 SV=1

 Score =  140 bits (353), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 72/163 (44%), Positives = 99/163 (60%), Gaps = 2/163 (1%)

Query: 52  HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLE-ALNRELNEE 110
           HA H +++A +   +F     R  VLMQMRFDG +GFPGG VD  +  LE  LNREL EE
Sbjct: 21  HACHALLYAPDPGLLFGRIPLRYAVLMQMRFDGRLGFPGGFVDLRDGSLEDGLNRELGEE 80

Query: 111 IN-LNPKYKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGT 169
           +      ++V+ +D    H     +++ HFY   +    +  +E GA  + D+G+EVLG 
Sbjct: 81  LGEAAGAFRVERADYRSSHAGSRPRVVAHFYTKLLTLEQLTAVEMGAPRARDHGLEVLGL 140

Query: 170 VRVPLYTMGDGFRGLPCFLTHSFIGNAKHQLLAALLKLKILSP 212
           VRVPLYT+ DG  GLP FL ++FIGNA+ QLL A+  L +L P
Sbjct: 141 VRVPLYTLRDGVGGLPAFLENTFIGNAREQLLEAVQNLGLLEP 183

RNA-decapping enzyme that binds specifically to U8 snoRNA. Part of the U8 snoRNP complex that is required for the accumulation of mature 5.8S and 28S rRNA. Has diphosphatase activity and removes m7G and m227G caps from U8 snoRNA. Has broad substrate specificity with manganese or cobalt as cofactor and can act on various RNA species (in vitro).

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q2V8X7|NUD16_SHEEP U8 snoRNA-decapping enzyme OS=Ovis aries GN=NUDT16 PE=2 SV=1

 Score =  139 bits (349), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 72/163 (44%), Positives = 98/163 (60%), Gaps = 2/163 (1%)

Query: 52  HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLE-ALNRELNEE 110
           HA H M++A +   +F     R  VLMQMRFDG +GFPGG VD  +  LE  LNREL EE
Sbjct: 21  HACHAMLYAPDPGLLFGRIPLRYAVLMQMRFDGRLGFPGGFVDLRDGSLEDGLNRELGEE 80

Query: 111 IN-LNPKYKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGT 169
           +      ++V+ +D    H     +++ HFY   +    +  +E GA  + D+G+EVLG 
Sbjct: 81  LGEAAAAFRVERADYRSSHAGSRPRVVAHFYTKLLTLEQLTAVEMGAPRARDHGLEVLGL 140

Query: 170 VRVPLYTMGDGFRGLPCFLTHSFIGNAKHQLLAALLKLKILSP 212
           VRVPLYT+ D   GLP FL ++FIGNA+ QLL A+  L +L P
Sbjct: 141 VRVPLYTLRDRVGGLPAFLENTFIGNAREQLLEAVQNLGLLEP 183

RNA-decapping enzyme that binds specifically to U8 snoRNA. Part of the U8 snoRNP complex that is required for the accumulation of mature 5.8S and 28S rRNA. Has diphosphatase activity and removes m7G and m227G caps from U8 snoRNA. Has broad substrate specificity with manganese or cobalt as cofactor and can act on various RNA species (in vitro).

Ovis aries (taxid: 9940)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 2

>sp|Q9IAY5|SDOS_CHICK Protein syndesmos OS=Gallus gallus GN=SDOS PE=1 SV=3

 Score =  130 bits (326), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/178 (41%), Positives = 104/178 (58%), Gaps = 5/178 (2%)

Query: 52  HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLE-ALNRELNEE 110
           H+ H M++A N   +F     R  VLMQMRFDG +GFPGG VD     LE  LNR L   
Sbjct: 48  HSCHAMLYAPNPGMLFGRIPLRYAVLMQMRFDGLLGFPGGFVDRRYWSLEDGLNRVLGLG 107

Query: 111 INLNPKYKVKDSDLVCIHYSQSK-KIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGT 169
           +      ++ ++D +C H +    +++ H YA Q+   ++  IE  A+ S D+G+EV+G 
Sbjct: 108 LGC---VRLTEADYLCSHLTDGPHRVVAHLYARQLTLEELHTIEISAVHSRDHGLEVMGM 164

Query: 170 VRVPLYTMGDGFRGLPCFLTHSFIGNAKHQLLAALLKLKILSPEEINQALNAKPVPVK 227
           VRVPLYT  D   GLP FL +SF+G AK QLL AL  L ++  E++ +A+ A   P K
Sbjct: 165 VRVPLYTQKDRMGGLPNFLANSFVGTAKFQLLFALKILNMVPEEKLAEAVAATQKPKK 222

Probable adapter protein involved in cytoskeletal organization. Overexpression enhances cell spreading, actin stress fiber and focal contact formation.

Gallus gallus (taxid: 9031)

>sp|Q6TEC1|NUD16_XENLA U8 snoRNA-decapping enzyme OS=Xenopus laevis GN=nudt16 PE=1 SV=1

 Score =  121 bits (303), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 75/179 (41%), Positives = 106/179 (59%), Gaps = 8/179 (4%)

Query: 49  SGY-HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLE-ALNRE 106
            GY HA H ++ A +  K+F     R  +LM MRFDG +GFPGG VD  +  LE  L RE
Sbjct: 30  EGYKHACHALLHAPSQAKLFDRVPIRRVLLMMMRFDGRLGFPGGFVDTRDISLEEGLKRE 89

Query: 107 LNEEINLNPKY---KVKDSDLVCIHYSQ-SKKIILHFYALQVEKTDVLEIEKGALTSHDY 162
           L EE  L P     +V + D       +  +K + HFY  +++  ++  IE  A+ + D+
Sbjct: 90  LEEE--LGPALATVEVTEDDYRSSQVREHPQKCVTHFYIKELKLEEIERIEAEAVNAKDH 147

Query: 163 GVEVLGTVRVPLYTMGDGFRGLPCFLTHSFIGNAKHQLLAALLKLKILSPEEINQALNA 221
           G+EV+G +RVPLYT+ D   GLP FL ++FIGN+K QLL AL  LK+L  ++I + L A
Sbjct: 148 GLEVMGLIRVPLYTLRDRVGGLPAFLCNNFIGNSKSQLLYALRSLKLLREDQIQEVLKA 206

RNA-decapping enzyme that binds specifically to U8 snoRNA. Part of the U8 snoRNP complex that is required for the accumulation of mature 5.8S and 28S rRNA. Has diphosphatase activity and removes m7G and m227G caps from U8 snoRNA. Has broad substrate specificity with manganese or cobalt as cofactor and can act on various RNA species (in vitro).

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 6

EC: 2

>sp|Q9BRJ7|SDOS_HUMAN Protein syndesmos OS=Homo sapiens GN=NUDT16L1 PE=1 SV=1

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/172 (40%), Positives = 102/172 (59%), Gaps = 5/172 (2%)

Query: 52  HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLE-ALNRELNEE 110
           H+ H M++A N  ++F     R +VLMQMRFDG +GFPGG VD     LE  LNR L   
Sbjct: 26  HSCHAMLYAANPGQLFGRIPMRFSVLMQMRFDGLLGFPGGFVDRRFWSLEDGLNRVLGLG 85

Query: 111 INLNPKYKVKDSDLVCIHYSQS-KKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGT 169
           +      ++ ++D +  H ++   +++ H YA Q+    +  +E  A+ S D+G+EVLG 
Sbjct: 86  LG---CLRLTEADYLSSHLTEGPHRVVAHLYARQLTLEQLHAVEISAVHSRDHGLEVLGL 142

Query: 170 VRVPLYTMGDGFRGLPCFLTHSFIGNAKHQLLAALLKLKILSPEEINQALNA 221
           VRVPLYT  D   G P FL+++F+  AK QLL AL  L ++  E++ +AL A
Sbjct: 143 VRVPLYTQKDRVGGFPNFLSNAFVSTAKCQLLFALKVLNMMPEEKLVEALAA 194

Probable adapter protein, which may link syndecan-4 (SDC4) and paxilin (TGFB1I1 and PXN) receptors.

Homo sapiens (taxid: 9606)

>sp|Q8VHN8|SDOS_MOUSE Protein syndesmos OS=Mus musculus GN=Nudt16l1 PE=1 SV=2

 Score =  118 bits (296), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 98/169 (57%), Gaps = 3/169 (1%)

Query: 52  HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEI 111
           H+ H M++A N  ++F     R +VLMQMRFDG +GFPGG VD     LE  +       
Sbjct: 26  HSCHAMLYAANPGQLFGRIPMRFSVLMQMRFDGLLGFPGGFVDRRFWSLE--DGLNRVLG 83

Query: 112 NLNPKYKVKDSDLVCIHYSQSK-KIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTV 170
                 ++ ++D +  H ++   +++ H YA Q+    +  +E  A+ S D+G+EVLG V
Sbjct: 84  LGLGGLRLTEADYLSSHLTEGPHRVVAHLYARQLTLEQLHAVEISAVHSRDHGLEVLGLV 143

Query: 171 RVPLYTMGDGFRGLPCFLTHSFIGNAKHQLLAALLKLKILSPEEINQAL 219
           RVPLYT  D   G P FL+++F+  AK+QLL AL  L ++  E++ +AL
Sbjct: 144 RVPLYTQKDRVGGFPNFLSNAFVSTAKYQLLFALKVLNMMPSEKLAEAL 192

Probable adapter protein, which may link syndecan-4 (SDC4) and paxilin (TGFB1I1 and PXN) receptors.

Mus musculus (taxid: 10090)

>sp|B2SFE8|RPPH_FRATM RNA pyrophosphohydrolase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=rppH PE=3 SV=1

 Score = 47.8 bits (112), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 9/69 (13%)

Query: 48  KSGYHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEALNREL 107
           KSGY A+  ++     +++F           Q R      FP G VD GE+PL+A+ REL
Sbjct: 4   KSGYRANVAIVLLNKQNRVFWG---------QRRNRTSWQFPQGGVDTGETPLQAMYREL 54

Query: 108 NEEINLNPK 116
           +EEI L P+
Sbjct: 55  HEEIGLRPQ 63

Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage.

Francisella tularensis subsp. mediasiatica (strain FSC147) (taxid: 441952)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|C5CXX0|RPPH_VARPS RNA pyrophosphohydrolase OS=Variovorax paradoxus (strain S110) GN=rppH PE=3 SV=1

 Score = 45.1 bits (105), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 24/101 (23%)

Query: 88  FPGGLVDAGESPLEALNRELNEEINLNP-------------KYKVKDSDL---VCIHYSQ 131
           FP G +D GESP +A+ REL+EE+ L+P             +Y+V D  +      HY  
Sbjct: 35  FPQGGIDRGESPEQAMFRELHEEVGLHPEHVRIVARTRDWLRYEVPDRFIRRDARGHYKG 94

Query: 132 SKKI------ILHFYALQVEKTDVLEIEKGALTSHDYGVEV 166
            K+I      I H + L +  TD  E +  A   HDY V +
Sbjct: 95  QKQIWYLLQLIGHDWDLNLRATDHPEFD--AWRWHDYWVPL 133

Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage.

Variovorax paradoxus (strain S110) (taxid: 543728)

EC: 3

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
328715060	452	PREDICTED: hypothetical protein LOC10016	0.913	0.469	0.532	1e-61
239790368	220	ACYPI007678 [Acyrthosiphon pisum]	0.918	0.968	0.529	1e-61
405977108	223	U8 snoRNA-decapping enzyme [Crassostrea	0.905	0.941	0.483	7e-50
242004576	211	Nucleoside diphosphate-linked moiety X m	0.806	0.886	0.484	7e-45
340368437	208	PREDICTED: u8 snoRNA-decapping enzyme-li	0.745	0.831	0.457	5e-35
443707650	167	hypothetical protein CAPTEDRAFT_112241,	0.607	0.844	0.506	3e-34
403265863	195	PREDICTED: U8 snoRNA-decapping enzyme-li	0.711	0.846	0.455	1e-33
291399629	223	PREDICTED: nudix-type motif 16 [Oryctola	0.685	0.713	0.465	1e-33
291399631	195	PREDICTED: syndesmos-like [Oryctolagus c	0.685	0.815	0.465	1e-33
443711243	146	hypothetical protein CAPTEDRAFT_51452, p	0.599	0.952	0.507	1e-33

>gi|328715060|ref|XP_001951778.2| PREDICTED: hypothetical protein LOC100166838 [Acyrthosiphon pisum]

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 116/218 (53%), Positives = 158/218 (72%), Gaps = 6/218 (2%)

Query: 5   NTGDRTWGSSAWNLAATEVYGRPSTNLNDFIELTQSDLKDDKYKSGYHASHCMIFAYNDD 64
           +TGDRTWG   W L +TE +GRP    N+FI + +S++  +KY    HA+HC I+A N++
Sbjct: 235 STGDRTWG---W-LGSTEEFGRPPEP-NEFIVIPKSEIHCEKYAGSNHAAHCFIYAENNE 289

Query: 65  KIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSD 123
           ++F  Y  RA++LMQ+R+DGY GFPGGL+DAGE  + A+NRE+ EEINLN   + V   D
Sbjct: 290 RVFDIYNPRASILMQLRYDGYFGFPGGLIDAGEDFVSAVNREMVEEINLNTTIHSVNHDD 349

Query: 124 LVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRG 183
            +  H+S+ K ++LHFY L+V  TD++EIE+ A  + DYG EVLGT+RVPLYT+GD +RG
Sbjct: 350 HIISHWSEKKNLVLHFYKLKVNMTDLIEIERQASLARDYGTEVLGTIRVPLYTLGDHYRG 409

Query: 184 LPCFLTHSFIGNAKHQLLAALLKLKILSPEEINQALNA 221
            P FL H+FIG ++ QL+AAL  L IL+PEEI  ALNA
Sbjct: 410 FPVFLNHNFIGCSRDQLIAALTSLNILTPEEIQLALNA 447

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239790368|dbj|BAH71749.1| ACYPI007678 [Acyrthosiphon pisum]

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 116/219 (52%), Positives = 158/219 (72%), Gaps = 6/219 (2%)

Query: 5   NTGDRTWGSSAWNLAATEVYGRPSTNLNDFIELTQSDLKDDKYKSGYHASHCMIFAYNDD 64
           +TGDRTWG   W L +TE +GRP    N+FI + +S++  +KY    HA+HC I+A N++
Sbjct: 3   STGDRTWG---W-LGSTEEFGRPPEP-NEFIVIPKSEIHCEKYAGSNHAAHCFIYAENNE 57

Query: 65  KIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSD 123
           ++F  Y  RA++LMQ+R+DGY GFPGGL+DAGE  + A+NRE+ EEINLN   + V   D
Sbjct: 58  RVFDIYNPRASILMQLRYDGYFGFPGGLIDAGEDFVSAVNREMVEEINLNTTIHSVNHDD 117

Query: 124 LVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRG 183
            +  H+S+ K ++LHFY L+V  TD++EIE+ A  + DYG EVLGT+RVPLYT+GD +RG
Sbjct: 118 HIISHWSEKKNLVLHFYKLKVNMTDLIEIERQASLARDYGTEVLGTIRVPLYTLGDHYRG 177

Query: 184 LPCFLTHSFIGNAKHQLLAALLKLKILSPEEINQALNAK 222
            P FL H+FIG ++ QL+AAL  L IL+PEEI  ALNA 
Sbjct: 178 FPVFLNHNFIGCSRDQLIAALTSLNILTPEEIQLALNAN 216

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405977108|gb|EKC41574.1| U8 snoRNA-decapping enzyme [Crassostrea gigas]

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 104/215 (48%), Positives = 134/215 (62%), Gaps = 5/215 (2%)

Query: 8   DRTWGSSAWNLAATEVYGRPSTNLNDFIELTQSDLKDDKYKSGYHASHCMIFAYNDDKIF 67
           D  WG     L A E YGR      DF  ++  +   DKY S  HASH M+FA ND  ++
Sbjct: 3   DIGWG----QLQAYEAYGRAGDKKEDFNIISYEEALSDKYSSSKHASHSMLFARNDAILW 58

Query: 68  ATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVC 126
             Y  R  VLMQMRFDG +GFPGGLVD GE PLE+ NRE+ EEI L+    K+ DSD V 
Sbjct: 59  DLYNTRGTVLMQMRFDGLLGFPGGLVDPGEHPLESANREMVEEIGLDLNILKLSDSDHVV 118

Query: 127 IHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGLPC 186
              +  K ++LHFY  ++  +   EIE G L + DYG E LG +R PL+TMGDG+RGLP 
Sbjct: 119 SFVNSDKNLVLHFYGKEITLSQFQEIELGNLKAPDYGSETLGVIRPPLFTMGDGYRGLPA 178

Query: 187 FLTHSFIGNAKHQLLAALLKLKILSPEEINQALNA 221
           FL++SF GNA+ +LL  L   K+LS +EI +A+ +
Sbjct: 179 FLSNSFAGNARQELLIGLQHFKLLSEDEIQEAVKS 213

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|242004576|ref|XP_002423158.1| Nucleoside diphosphate-linked moiety X motif, putative [Pediculus humanus corporis] gi|212506115|gb|EEB10420.1| Nucleoside diphosphate-linked moiety X motif, putative [Pediculus humanus corporis]

 Score =  186 bits (472), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 94/194 (48%), Positives = 125/194 (64%), Gaps = 7/194 (3%)

Query: 30  NLNDFIELTQSDLKDDKYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFP 89
           ++N      + D  D+ YK+  H SH MI+A    K    Y  +A +LMQMRFDG +GFP
Sbjct: 15  DINKLYAFKKIDKNDNIYKNYTHCSHAMIYATTSTKSLQIYDRKAIILMQMRFDGLLGFP 74

Query: 90  GGLVDAGESPLEALNRELNEEI----NLNPKYKVKDSDLVCIHYSQSKKIILHFYALQVE 145
           GG VD GESP EA+NREL EE+    ++ P   V DS     H  +  K++LHFYA++V 
Sbjct: 75  GGGVDDGESPTEAVNRELREEVGWIEDVGP---VMDSHYQFTHVDEYNKLVLHFYAIEVS 131

Query: 146 KTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGLPCFLTHSFIGNAKHQLLAALL 205
           +T + +IEK +  + D+G EVLG  RVPLYTM D +RGLP FL +SF+GNAK QL+ +L+
Sbjct: 132 ETKIFDIEKNSYRAKDFGEEVLGNFRVPLYTMSDSYRGLPAFLKNSFVGNAKTQLIESLI 191

Query: 206 KLKILSPEEINQAL 219
            LKIL  E + QAL
Sbjct: 192 NLKILPAENVFQAL 205

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340368437|ref|XP_003382758.1| PREDICTED: u8 snoRNA-decapping enzyme-like [Amphimedon queenslandica]

 Score =  153 bits (386), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 80/175 (45%), Positives = 107/175 (61%), Gaps = 2/175 (1%)

Query: 48  KSGYHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEALNREL 107
           K   H +H MI+A   +K+F  Y  R  +LMQMRFDG +GF GG+VD GE+  EA  RE 
Sbjct: 20  KQCRHCAHAMIYAKLPEKLFGRYDKRYAILMQMRFDGTLGFSGGMVDEGETVEEACTREC 79

Query: 108 NEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEV 166
           +EE+ ++P    +   D V  HYS      LHF+A +V      EIEK A +S D+G EV
Sbjct: 80  SEELGVSPADLTITQDDHVTTHYSDKTHFCLHFFAKEVSLELFHEIEKKATSSKDWGDEV 139

Query: 167 LGTVRVPLYTMGDGFRGLPCFLTHSFIGNAKHQLLAALLKLKILSPEEINQALNA 221
           LG VR PL+T+ +G  G P FL HSFIGN+K QLL ++ +  +L+ EE+  AL  
Sbjct: 140 LGIVRCPLHTLPNGL-GFPAFLRHSFIGNSKVQLLTSIRERGLLTEEEVQTALKT 193

Source: Amphimedon queenslandica

Species: Amphimedon queenslandica

Genus: Amphimedon

Family: Niphatidae

Order: Haplosclerida

Class: Demospongiae

Phylum: Porifera

Superkingdom: Eukaryota

>gi|443707650|gb|ELU03163.1| hypothetical protein CAPTEDRAFT_112241, partial [Capitella teleta]

 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 73/144 (50%), Positives = 99/144 (68%), Gaps = 3/144 (2%)

Query: 78  MQMRFDGYIGFPGGLVDAG--ESPLEALNRELNEEINLN-PKYKVKDSDLVCIHYSQSKK 134
           MQ RFDG +GFPGGL+D G  E+P+EALNREL EEINL+  ++  +  D++  H + SKK
Sbjct: 5   MQSRFDGNMGFPGGLMDKGPQETPVEALNRELVEEINLDLSRFACQQEDILLTHVNHSKK 64

Query: 135 IILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGLPCFLTHSFIG 194
           ++ +FYA +V   +  EIEK  L S ++G E  G +RVPL+TM DG+RG P FL + F G
Sbjct: 65  LVTYFYAKEVNLVEFSEIEKAVLDSEEWGTETFGVLRVPLFTMSDGYRGFPVFLANKFAG 124

Query: 195 NAKHQLLAALLKLKILSPEEINQA 218
           NA+ QLL A+    ILS +E+N A
Sbjct: 125 NARIQLLKAITAKNILSEDEVNTA 148

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|403265863|ref|XP_003925131.1| PREDICTED: U8 snoRNA-decapping enzyme-like [Saimiri boliviensis boliviensis]

 Score =  149 bits (376), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 76/167 (45%), Positives = 105/167 (62%), Gaps = 2/167 (1%)

Query: 52  HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLE-ALNRELNEE 110
           HA H +++A +   +F     R  VLMQMRFDG +GFPGG VD  ++ LE  LNREL EE
Sbjct: 21  HACHALLYAPDPGMLFGRIPLRYAVLMQMRFDGRLGFPGGFVDKQDNSLEEGLNRELREE 80

Query: 111 IN-LNPKYKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGT 169
           +      ++V+ +D    H     +++ HFYA ++    +L +E GA  + D+G+EVLG 
Sbjct: 81  LGEAAAAFRVERTDYRSSHAGSGPRVVAHFYAKRLTLEQLLAVEAGATRAKDHGLEVLGL 140

Query: 170 VRVPLYTMGDGFRGLPCFLTHSFIGNAKHQLLAALLKLKILSPEEIN 216
           VRVPLYT+ DG  GLP FL +SFIG+A+ QLL AL  L +L P  I+
Sbjct: 141 VRVPLYTLRDGVGGLPTFLENSFIGSAREQLLEALQDLGLLQPGSIS 187

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291399629|ref|XP_002716216.1| PREDICTED: nudix-type motif 16 [Oryctolagus cuniculus]

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 75/161 (46%), Positives = 104/161 (64%), Gaps = 2/161 (1%)

Query: 52  HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLE-ALNRELNEE 110
           HA H M++A +  K+F     R  VLMQMRFDG +GFPGG VD+ +  LE  LNREL EE
Sbjct: 21  HACHAMLYAPDPGKLFGRIPLRYAVLMQMRFDGRLGFPGGFVDSQDGCLEDGLNRELREE 80

Query: 111 IN-LNPKYKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGT 169
           +      ++V+ +D    H +  ++++ HFYA ++E   ++ +E GA  + D+G+EVLG 
Sbjct: 81  LGEAASAFRVERADYRSSHAAAGQRVVAHFYAKRLELEQLVAVEAGAPQAKDHGLEVLGL 140

Query: 170 VRVPLYTMGDGFRGLPCFLTHSFIGNAKHQLLAALLKLKIL 210
           VRVPLYT+ DG  GLP FL +SFIG A+ QL  AL  L +L
Sbjct: 141 VRVPLYTLRDGVGGLPAFLKNSFIGTAREQLQEALQDLGLL 181

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291399631|ref|XP_002716217.1| PREDICTED: syndesmos-like [Oryctolagus cuniculus]

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 75/161 (46%), Positives = 104/161 (64%), Gaps = 2/161 (1%)

Query: 52  HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLE-ALNRELNEE 110
           HA H M++A +  K+F     R  VLMQMRFDG +GFPGG VD+ +  LE  LNREL EE
Sbjct: 21  HACHAMLYAPDPGKLFGRIPLRYAVLMQMRFDGRLGFPGGFVDSRDGCLEDGLNRELREE 80

Query: 111 IN-LNPKYKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGT 169
           +      ++V+ +D    H +  ++++ HFYA ++E   ++ +E GA  + D+G+EVLG 
Sbjct: 81  LGEAASAFRVERADYRSSHAAAGQRVVAHFYAKRLELEQLVAVEAGAPQAKDHGLEVLGL 140

Query: 170 VRVPLYTMGDGFRGLPCFLTHSFIGNAKHQLLAALLKLKIL 210
           VRVPLYT+ DG  GLP FL +SFIG A+ QL  AL  L +L
Sbjct: 141 VRVPLYTLRDGVGGLPAFLKNSFIGTAREQLQEALQDLGLL 181

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|443711243|gb|ELU05085.1| hypothetical protein CAPTEDRAFT_51452, partial [Capitella teleta]

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/142 (50%), Positives = 98/142 (69%), Gaps = 3/142 (2%)

Query: 78  MQMRFDGYIGFPGGLVDAG--ESPLEALNRELNEEINLN-PKYKVKDSDLVCIHYSQSKK 134
           MQ RFDG +GFPGGL+D G  E+P+EALNREL EEINL+  ++  +  D++  H + SKK
Sbjct: 5   MQSRFDGNMGFPGGLMDKGPQETPVEALNRELVEEINLDLSRFACQQEDILLTHVNHSKK 64

Query: 135 IILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGLPCFLTHSFIG 194
           ++ +FYA +V   +  EIEK  L S ++G E  G +RVPL+TM DG+RG P FL + F G
Sbjct: 65  LVTYFYAKEVNLVEFSEIEKAVLDSEEWGTETYGVLRVPLFTMSDGYRGFPVFLANKFAG 124

Query: 195 NAKHQLLAALLKLKILSPEEIN 216
           NA+ QLL A+    ILS +E+N
Sbjct: 125 NARIQLLKAITAKNILSEDEVN 146

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
UNIPROTKB|Q96DE0	195	NUDT16 "U8 snoRNA-decapping en	0.633	0.753	0.386	2e-24
MGI|MGI:1922936	195	Nudt16 "nudix (nucleoside diph	0.616	0.733	0.4	3.8e-23
UNIPROTKB|A1A4Q9	195	NUDT16 "U8 snoRNA-decapping en	0.620	0.738	0.383	6.1e-23
RGD|1311387	195	Nudt16 "nudix (nucleoside diph	0.616	0.733	0.4	1.3e-22
UNIPROTKB|Q2V8X7	195	NUDT16 "U8 snoRNA-decapping en	0.620	0.738	0.383	1.6e-22
UNIPROTKB|Q9IAY5	314	SDOS "Protein syndesmos" [Gall	0.75	0.554	0.338	3.4e-22
ZFIN|ZDB-GENE-041010-100	208	zgc:103759 "zgc:103759" [Danio	0.732	0.817	0.36	9e-22
UNIPROTKB|Q3MHX9	211	NUDT16L1 "Uncharacterized prot	0.724	0.796	0.327	3.5e-20
UNIPROTKB|F1Q0M6	149	NUDT16 "Uncharacterized protei	0.504	0.785	0.428	3.5e-20
UNIPROTKB|F1RK69	211	NUDT16L1 "Uncharacterized prot	0.724	0.796	0.327	3.5e-20

UNIPROTKB|Q96DE0 NUDT16 "U8 snoRNA-decapping enzyme" [Homo sapiens (taxid:9606)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 58/150 (38%), Positives = 85/150 (56%)

Query:    49 SGY-HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPXXXXXXXX 107
             SG+ HA H +++A +   +F     R  +LMQMRFDG +GFPGG VD  +          
Sbjct:    17 SGWRHACHALLYAPDPGMLFGRIPLRYAILMQMRFDGRLGFPGGFVDTQDRSLEDGLNRE 76

Query:   108 XXXXX--XXPKYKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVE 165
                        ++V+ +D    H     +++ HFYA ++   ++L +E GA  + D+G+E
Sbjct:    77 LREELGEAAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLTLEELLAVEAGATRAKDHGLE 136

Query:   166 VLGTVRVPLYTMGDGFRGLPCFLTHSFIGN 195
             VLG VRVPLYT+ DG  GLP FL +SFIG+
Sbjct:   137 VLGLVRVPLYTLRDGVGGLPTFLENSFIGS 166

GO:0005654 "nucleoplasm" evidence=IEA

GO:0050072 "m7G(5')pppN diphosphatase activity" evidence=IDA

GO:0008235 "metalloexopeptidase activity" evidence=IDA

GO:0030515 "snoRNA binding" evidence=IDA

GO:0003729 "mRNA binding" evidence=IDA

GO:0030145 "manganese ion binding" evidence=IDA

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006402 "mRNA catabolic process" evidence=IDA

GO:0046709 "IDP catabolic process" evidence=IDA

GO:0016077 "snoRNA catabolic process" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0005525 "GTP binding" evidence=IDA

GO:0019204 "nucleotide phosphatase activity" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0006382 "adenosine to inosine editing" evidence=IMP

GO:2000781 "positive regulation of double-strand break repair" evidence=IMP

GO:0090068 "positive regulation of cell cycle process" evidence=IMP

GO:0008284 "positive regulation of cell proliferation" evidence=IMP

GO:0050897 "cobalt ion binding" evidence=IDA

GO:2000233 "negative regulation of rRNA processing" evidence=ISS

GO:1901641 "ITP binding" evidence=IDA

GO:1901640 "XTP binding" evidence=IDA

GO:1901639 "XDP catabolic process" evidence=IDA

GO:0035863 "dITP catabolic process" evidence=ISS

GO:0035870 "dITP diphosphatase activity" evidence=ISS

MGI|MGI:1922936 Nudt16 "nudix (nucleoside diphosphate linked moiety X)-type motif 16" [Mus musculus (taxid:10090)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 58/145 (40%), Positives = 81/145 (55%)

Query:    52 HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGES--PXXXXXXXXXX 109
             HA H +++A +  K+F     R  VLMQMRFDG +GFPGG VDA +S             
Sbjct:    21 HACHALLYAPDPRKLFGRIPMRFAVLMQMRFDGRLGFPGGFVDAQDSCLEDGLNRELREE 80

Query:   110 XXXXXPKYKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGT 169
                    ++V+ SD    H +   +++ HFYA ++    +  +E  A  + D+G+EVLG 
Sbjct:    81 LGEAMSAFRVERSDYRSSHIAARPRVVAHFYAKRLTLEQLQAVEARAPQAKDHGLEVLGL 140

Query:   170 VRVPLYTMGDGFRGLPCFLTHSFIG 194
             VRVPLY + DG  GLP FL +SFIG
Sbjct:   141 VRVPLYVLRDGEGGLPAFLENSFIG 165

GO:0000287 "magnesium ion binding" evidence=ISO

GO:0003723 "RNA binding" evidence=IEA

GO:0003729 "mRNA binding" evidence=ISO

GO:0005525 "GTP binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006382 "adenosine to inosine editing" evidence=ISO

GO:0006402 "mRNA catabolic process" evidence=ISO;IMP

GO:0008235 "metalloexopeptidase activity" evidence=ISO

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0016077 "snoRNA catabolic process" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016791 "phosphatase activity" evidence=IDA

GO:0019204 "nucleotide phosphatase activity" evidence=ISO

GO:0030145 "manganese ion binding" evidence=ISO

GO:0030515 "snoRNA binding" evidence=ISO

GO:0035863 "dITP catabolic process" evidence=IGI

GO:0035870 "dITP diphosphatase activity" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0046709 "IDP catabolic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0050072 "m7G(5')pppN diphosphatase activity" evidence=ISO

GO:0050897 "cobalt ion binding" evidence=ISO

GO:0051276 "chromosome organization" evidence=IGI

GO:0090068 "positive regulation of cell cycle process" evidence=ISO

GO:1901639 "XDP catabolic process" evidence=ISO

GO:1901640 "XTP binding" evidence=ISO

GO:1901641 "ITP binding" evidence=ISO

GO:2000781 "positive regulation of double-strand break repair" evidence=ISO

UNIPROTKB|A1A4Q9 NUDT16 "U8 snoRNA-decapping enzyme" [Bos taurus (taxid:9913)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 56/146 (38%), Positives = 78/146 (53%)

Query:    52 HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDA--GESPXXXXXXXXXX 109
             HA H +++A +   +F     R  VLMQMRFDG +GFPGG VD   G             
Sbjct:    21 HACHALLYAPDPGLLFGRIPLRYAVLMQMRFDGRLGFPGGFVDLRDGSLEDGLNRELGEE 80

Query:   110 XXXXXPKYKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGT 169
                    ++V+ +D    H     +++ HFY   +    +  +E GA  + D+G+EVLG 
Sbjct:    81 LGEAAGAFRVERADYRSSHAGSRPRVVAHFYTKLLTLEQLTAVEMGAPRARDHGLEVLGL 140

Query:   170 VRVPLYTMGDGFRGLPCFLTHSFIGN 195
             VRVPLYT+ DG  GLP FL ++FIGN
Sbjct:   141 VRVPLYTLRDGVGGLPAFLENTFIGN 166

GO:0050897 "cobalt ion binding" evidence=ISS

GO:0030145 "manganese ion binding" evidence=ISS

GO:0000287 "magnesium ion binding" evidence=ISS

GO:0019204 "nucleotide phosphatase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:2000781 "positive regulation of double-strand break repair" evidence=ISS

GO:0090068 "positive regulation of cell cycle process" evidence=ISS

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

GO:0006382 "adenosine to inosine editing" evidence=ISS

GO:0050072 "m7G(5')pppN diphosphatase activity" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0030515 "snoRNA binding" evidence=ISS

GO:0016077 "snoRNA catabolic process" evidence=ISS

GO:0006402 "mRNA catabolic process" evidence=ISS

GO:0046709 "IDP catabolic process" evidence=ISS

GO:0035870 "dITP diphosphatase activity" evidence=ISS

GO:0035863 "dITP catabolic process" evidence=ISS

GO:1901641 "ITP binding" evidence=ISS

GO:1901640 "XTP binding" evidence=ISS

GO:1901639 "XDP catabolic process" evidence=ISS

GO:2000233 "negative regulation of rRNA processing" evidence=ISS

GO:0008235 "metalloexopeptidase activity" evidence=ISS

GO:0003729 "mRNA binding" evidence=ISS

GO:0005654 "nucleoplasm" evidence=IEA

RGD|1311387 Nudt16 "nudix (nucleoside diphosphate linked moiety X)-type motif 16" [Rattus norvegicus (taxid:10116)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 58/145 (40%), Positives = 80/145 (55%)

Query:    52 HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGES--PXXXXXXXXXX 109
             HA H +++A +  K+F     R  VLMQMRFDG +GFPGG VDA +S             
Sbjct:    21 HACHALLYAPDPRKLFGRIPMRFAVLMQMRFDGRLGFPGGFVDAQDSCLEDGLNRELREE 80

Query:   110 XXXXXPKYKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGT 169
                    ++V+ SD      +   +++ HFYA ++    +  +E  A  + D+G+EVLG 
Sbjct:    81 LGDAVSAFRVERSDYQSSRIAARPRVVAHFYAKRLTLEQLQAVEARAPLAKDHGLEVLGL 140

Query:   170 VRVPLYTMGDGFRGLPCFLTHSFIG 194
             VRVPLY M DG  GLP FL +SFIG
Sbjct:   141 VRVPLYIMRDGEGGLPAFLENSFIG 165

GO:0000287 "magnesium ion binding" evidence=ISO

GO:0003729 "mRNA binding" evidence=ISO

GO:0005525 "GTP binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006382 "adenosine to inosine editing" evidence=ISO

GO:0006402 "mRNA catabolic process" evidence=ISO

GO:0008235 "metalloexopeptidase activity" evidence=ISO

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0016077 "snoRNA catabolic process" evidence=ISO

GO:0016791 "phosphatase activity" evidence=ISO

GO:0019204 "nucleotide phosphatase activity" evidence=ISO

GO:0030145 "manganese ion binding" evidence=ISO

GO:0030515 "snoRNA binding" evidence=ISO

GO:0035863 "dITP catabolic process" evidence=IEA;ISO

GO:0035870 "dITP diphosphatase activity" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0046709 "IDP catabolic process" evidence=ISO

GO:0050072 "m7G(5')pppN diphosphatase activity" evidence=ISO

GO:0050897 "cobalt ion binding" evidence=ISO

GO:0051276 "chromosome organization" evidence=IEA;ISO

GO:0090068 "positive regulation of cell cycle process" evidence=ISO

GO:1901639 "XDP catabolic process" evidence=ISO

GO:1901640 "XTP binding" evidence=ISO

GO:1901641 "ITP binding" evidence=ISO

GO:2000781 "positive regulation of double-strand break repair" evidence=ISO

UNIPROTKB|Q2V8X7 NUDT16 "U8 snoRNA-decapping enzyme" [Ovis aries (taxid:9940)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 56/146 (38%), Positives = 77/146 (52%)

Query:    52 HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDA--GESPXXXXXXXXXX 109
             HA H M++A +   +F     R  VLMQMRFDG +GFPGG VD   G             
Sbjct:    21 HACHAMLYAPDPGLLFGRIPLRYAVLMQMRFDGRLGFPGGFVDLRDGSLEDGLNRELGEE 80

Query:   110 XXXXXPKYKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGT 169
                    ++V+ +D    H     +++ HFY   +    +  +E GA  + D+G+EVLG 
Sbjct:    81 LGEAAAAFRVERADYRSSHAGSRPRVVAHFYTKLLTLEQLTAVEMGAPRARDHGLEVLGL 140

Query:   170 VRVPLYTMGDGFRGLPCFLTHSFIGN 195
             VRVPLYT+ D   GLP FL ++FIGN
Sbjct:   141 VRVPLYTLRDRVGGLPAFLENTFIGN 166

GO:0000287 "magnesium ion binding" evidence=ISS

GO:0003729 "mRNA binding" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006382 "adenosine to inosine editing" evidence=ISS

GO:0006402 "mRNA catabolic process" evidence=ISS

GO:0008235 "metalloexopeptidase activity" evidence=ISS

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

GO:0016077 "snoRNA catabolic process" evidence=ISS

GO:0019204 "nucleotide phosphatase activity" evidence=ISS

GO:0030145 "manganese ion binding" evidence=ISS

GO:0030515 "snoRNA binding" evidence=ISS

GO:0035863 "dITP catabolic process" evidence=ISS

GO:0035870 "dITP diphosphatase activity" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0046709 "IDP catabolic process" evidence=ISS

GO:0050072 "m7G(5')pppN diphosphatase activity" evidence=ISS

GO:0050897 "cobalt ion binding" evidence=ISS

GO:0090068 "positive regulation of cell cycle process" evidence=ISS

GO:1901639 "XDP catabolic process" evidence=ISS

GO:1901640 "XTP binding" evidence=ISS

GO:1901641 "ITP binding" evidence=ISS

GO:2000233 "negative regulation of rRNA processing" evidence=ISS

GO:2000781 "positive regulation of double-strand break repair" evidence=ISS

UNIPROTKB|Q9IAY5 SDOS "Protein syndesmos" [Gallus gallus (taxid:9031)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 60/177 (33%), Positives = 87/177 (49%)

Query:    52 HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPXXXXXXXXXXXX 111
             H+ H M++A N   +F     R  VLMQMRFDG +GFPGG VD                 
Sbjct:    48 HSCHAMLYAPNPGMLFGRIPLRYAVLMQMRFDGLLGFPGGFVD--RRYWSLEDGLNRVLG 105

Query:   112 XXXPKYKVKDSDLVCIHYSQSK-KIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTV 170
                   ++ ++D +C H +    +++ H YA Q+   ++  IE  A+ S D+G+EV+G V
Sbjct:   106 LGLGCVRLTEADYLCSHLTDGPHRVVAHLYARQLTLEELHTIEISAVHSRDHGLEVMGMV 165

Query:   171 RVPLYTMGDGFRGLPCFLTHSFIGNXXXXXXXXXXXXXXXSPEEINQALNAKPVPVK 227
             RVPLYT  D   GLP FL +SF+G                  E++ +A+ A   P K
Sbjct:   166 RVPLYTQKDRMGGLPNFLANSFVGTAKFQLLFALKILNMVPEEKLAEAVAATQKPKK 222

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0030515 "snoRNA binding" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0050072 "m7G(5')pppN diphosphatase activity" evidence=ISS

ZFIN|ZDB-GENE-041010-100 zgc:103759 "zgc:103759" [Danio rerio (taxid:7955)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 63/175 (36%), Positives = 89/175 (50%)

Query:    48 KSGY-HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPXXXXXXX 106
             + GY HA H M++  +  K+F     +  VLMQMRFDG +GFPGGLV+  E         
Sbjct:    14 RQGYRHACHVMLYGDSSAKLFGKIPIKHIVLMQMRFDGLLGFPGGLVNPSEETLEAGLSR 73

Query:   107 XXXXXXXXP-KYKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSH-DYGV 164
                       +  V D    C+  S   ++I H Y  ++ + ++ EIE+ A+ S  D+G+
Sbjct:    74 ELHEEVGVAVRVGVDDHMSSCVS-SSCPRLITHSYIKKMTEAELKEIERAAVASATDHGL 132

Query:   165 EVLGTVRVPLYTMGDGFRGLPCFLTHSFIGNXXXXXXXXXXXXXXXSPEEINQAL 219
             EVLG VRVPLY +  G  GLP FL+HSFI N               S  E+ +A+
Sbjct:   133 EVLGMVRVPLYFLKKG-GGLPYFLSHSFISNSRAQLLSALRHCRLLSQGELKEAV 186

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q3MHX9 NUDT16L1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 56/171 (32%), Positives = 85/171 (49%)

Query:    52 HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPXXXXXXXXXXXX 111
             H+ H M++A N  ++F     R +VLMQMRFDG +GFPGG VD                 
Sbjct:    26 HSCHAMLYAANPGQLFGRIPMRFSVLMQMRFDGLLGFPGGFVD--RRFWSLEDGLNRVLG 83

Query:   112 XXXPKYKVKDSDLVCIHYSQSK-KIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTV 170
                   ++ ++D +  H ++   +++ H YA Q+    +  +E  A+ S D+G+EVLG V
Sbjct:    84 LGLGCLRLTEADYLSSHLTEGPHRVVAHLYARQLTLEQLHAVEISAVHSRDHGLEVLGLV 143

Query:   171 RVPLYTMGDGFRGLPCFLTHSFIGNXXXXXXXXXXXXXXXSPEEINQALNA 221
             RVPLYT  D   G P FL+++FI                   E++ +AL A
Sbjct:   144 RVPLYTQKDRVGGFPNFLSNAFISTAKYQLLFALKVLNMMPEEKLAEALAA 194

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|F1Q0M6 NUDT16 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 51/119 (42%), Positives = 68/119 (57%)

Query:    78 MQMRFDGYIGFPGGLVDA--GESPXXXXXXXXXXXXXXXPKYKVKDSDLVCIHYSQSKKI 135
             MQMRFDG +GFPGGLV+   G                      ++ +D    H +   ++
Sbjct:     1 MQMRFDGRLGFPGGLVNLQDGSLEAGLRRELSEELGEAAAHVPLERADYRSSHAAPGPRV 60

Query:   136 ILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGLPCFLTHSFIG 194
             + HFYA Q+    +L +EKGA  + D+G+EVLG VRVPLYT+ DG  GLP FL +SFIG
Sbjct:    61 VAHFYAKQLTLEQLLAVEKGAPRAKDHGLEVLGLVRVPLYTLRDGVGGLPAFLENSFIG 119

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|F1RK69 NUDT16L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 56/171 (32%), Positives = 85/171 (49%)

Query:    52 HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPXXXXXXXXXXXX 111
             H+ H M++A N  ++F     R +VLMQMRFDG +GFPGG VD                 
Sbjct:    26 HSCHAMLYAANPGQLFGRIPMRFSVLMQMRFDGLLGFPGGFVD--RRFWSLEDGLNRVLG 83

Query:   112 XXXPKYKVKDSDLVCIHYSQSK-KIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTV 170
                   ++ ++D +  H ++   +++ H YA Q+    +  +E  A+ S D+G+EVLG V
Sbjct:    84 LGLGCLRLTEADYLSSHLTEGPHRVVAHLYARQLTLEQLHAVEISAVHSRDHGLEVLGLV 143

Query:   171 RVPLYTMGDGFRGLPCFLTHSFIGNXXXXXXXXXXXXXXXSPEEINQALNA 221
             RVPLYT  D   G P FL+++FI                   E++ +AL A
Sbjct:   144 RVPLYTQKDRVGGFPNFLSNAFISTAKYQLLFALKVLNMMPEEKLAEALAA 194

GO:0016787 "hydrolase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96DE0	NUD16_HUMAN	3, ., 6, ., 1, ., 6, 2	0.4444	0.7241	0.8615	yes	N/A
A1A4Q9	NUD16_BOVIN	3, ., 6, ., 1, ., -	0.4417	0.6939	0.8256	yes	N/A
Q6P3D0	NUD16_MOUSE	3, ., 6, ., 1, ., 6, 2	0.4723	0.6939	0.8256	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	232
pfam00293	133	pfam00293, NUDIX, NUDIX domain	3e-11
cd02883	123	cd02883, Nudix_Hydrolase, Nudix hydrolase is a sup	4e-09
cd03425	124	cd03425, MutT_pyrophosphohydrolase, The MutT pyrop	1e-08
cd04682	122	cd04682, Nudix_Hydrolase_23, Members of the Nudix	1e-08
cd03424	137	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase	1e-08
PRK11762	185	PRK11762, nudE, adenosine nucleotide hydrolase Nud	5e-08
PRK00714	156	PRK00714, PRK00714, RNA pyrophosphohydrolase; Revi	2e-07
COG1051	145	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucl	3e-07
cd04690	118	cd04690, Nudix_Hydrolase_31, Members of the Nudix	3e-07
cd03671	147	cd03671, Ap4A_hydrolase_plant_like, Diadenosine te	3e-07
COG0494	161	COG0494, MutT, NTP pyrophosphohydrolases including	6e-07
cd03427	137	cd03427, MTH1, MutT homolog-1 (MTH1) is a member o	2e-06
PRK10776	129	PRK10776, PRK10776, nucleoside triphosphate pyroph	2e-06
cd04691	117	cd04691, Nudix_Hydrolase_32, Members of the Nudix	8e-06
PRK08999	312	PRK08999, PRK08999, hypothetical protein; Provisio	8e-06
cd04677	132	cd04677, Nudix_Hydrolase_18, Members of the Nudix	2e-05
cd04686	131	cd04686, Nudix_Hydrolase_27, Members of the Nudix	2e-05
PRK10546	135	PRK10546, PRK10546, pyrimidine (deoxy)nucleoside t	2e-05
cd04676	129	cd04676, Nudix_Hydrolase_17, Members of the Nudix	4e-05
cd04673	122	cd04673, Nudix_Hydrolase_15, Members of the Nudix	5e-05
cd04667	112	cd04667, Nudix_Hydrolase_10, Members of the Nudix	9e-05
cd03428	130	cd03428, Ap4A_hydrolase_human_like, Diadenosine te	1e-04
cd04681	130	cd04681, Nudix_Hydrolase_22, Members of the Nudix	1e-04
cd03426	157	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse)	1e-04
cd04664	129	cd04664, Nudix_Hydrolase_7, Members of the Nudix h	3e-04
TIGR00586	128	TIGR00586, mutt, mutator mutT protein	3e-04
cd04665	118	cd04665, Nudix_Hydrolase_8, Members of the Nudix h	4e-04
cd04684	128	cd04684, Nudix_Hydrolase_25, Contains a crystal st	5e-04
cd04669	121	cd04669, Nudix_Hydrolase_11, Members of the Nudix	5e-04
cd04683	120	cd04683, Nudix_Hydrolase_24, Members of the Nudix	6e-04
TIGR02705	156	TIGR02705, nudix_YtkD, nucleoside triphosphatase Y	7e-04
cd04692	144	cd04692, Nudix_Hydrolase_33, Members of the Nudix	0.001
cd04685	133	cd04685, Nudix_Hydrolase_26, Members of the Nudix	0.001
cd04680	120	cd04680, Nudix_Hydrolase_21, Members of the Nudix	0.002
cd04696	125	cd04696, Nudix_Hydrolase_37, Members of the Nudix	0.003

>gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain

 Score = 59.0 bits (143), Expect = 3e-11
 Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 5/91 (5%)

Query: 70  YTARANVLMQMRFD-----GYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDL 124
                 VL+  R       G    PGG V+ GESP EA  REL EE  L     +    L
Sbjct: 10  LNEDGEVLLVRRSRPPVFPGLWELPGGKVEPGESPEEAAVRELEEETGLRVLLLLLLGVL 69

Query: 125 VCIHYSQSKKIILHFYALQVEKTDVLEIEKG 155
                 +     +H +  ++   +       
Sbjct: 70  EYPAPGRDGGEHVHVFLAELLGGEPEPQPNE 100

Length = 133

>gnl|CDD|239217 cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 52.9 bits (127), Expect = 4e-09
 Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 3/81 (3%)

Query: 76  VLMQMR---FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQS 132
           VL+  R     G    PGG V+ GE+  EA  RE+ EE  L+                + 
Sbjct: 14  VLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYEVESPDEG 73

Query: 133 KKIILHFYALQVEKTDVLEIE 153
           +  ++  +  ++   +   + 
Sbjct: 74  EHAVVFVFLARLVGGEPTLLP 94

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase. Length = 123

>gnl|CDD|239517 cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

 Score = 51.7 bits (125), Expect = 1e-08
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 6/55 (10%)

Query: 88  FPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLV-CIHYS-QSKKIILHFY 140
           FPGG V+ GE+P +AL REL EE+ +     V+  +L+  + +    K++ LH +
Sbjct: 32  FPGGKVEPGETPEQALVRELREELGIE----VEVGELLATVEHDYPDKRVTLHVF 82

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides. Length = 124

>gnl|CDD|240038 cd04682, Nudix_Hydrolase_23, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 7/49 (14%)

Query: 75  NVLMQMR-------FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK 116
            +L+Q+R       + G+   PGG  + GE+PLE + REL EEI L   
Sbjct: 13  RLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLP 61

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|239516 cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

 Score = 51.3 bits (124), Expect = 1e-08
 Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 32/127 (25%)

Query: 57  MIFAYNDDKIFATYTARANVLM--QMRF--DGY-IGFPGGLVDAGESPLEALNRELNEEI 111
            +  Y+DD           V++  Q R    G+ +  P GL+D GE P EA  REL EE 
Sbjct: 6   AVLPYDDDG---------KVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEET 56

Query: 112 NLNPKYKVKDSDLVCIHYSQ----SKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVL 167
                Y+  D + +   Y       ++I L F A  +   +   +++G         E +
Sbjct: 57  G----YEAGDLEKLGSFYPSPGFSDERIHL-FLAEDLSPGEEGLLDEG---------EDI 102

Query: 168 GTVRVPL 174
             V VPL
Sbjct: 103 EVVLVPL 109

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer. Length = 137

>gnl|CDD|183303 PRK11762, nudE, adenosine nucleotide hydrolase NudE; Provisional

 Score = 51.0 bits (123), Expect = 5e-08
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 86  IGFPGGLVDAGESPLEALNRELNEEI 111
           +GFP GL+D GE+PLEA NREL EE+
Sbjct: 76  LGFPKGLIDPGETPLEAANRELKEEV 101

Length = 185

>gnl|CDD|234820 PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed

 Score = 48.6 bits (117), Expect = 2e-07
 Identities = 15/29 (51%), Positives = 21/29 (72%)

Query: 88  FPGGLVDAGESPLEALNRELNEEINLNPK 116
           FP G +D GE+P +A+ REL EE+ L P+
Sbjct: 36  FPQGGIDPGETPEQAMYRELYEEVGLRPE 64

Length = 156

>gnl|CDD|223979 COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 16/36 (44%), Positives = 19/36 (52%)

Query: 82  FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKY 117
             GY   PGG V+ GE+  EA  REL EE  L  + 
Sbjct: 33  GAGYWALPGGFVEIGETLEEAARRELKEETGLRVRV 68

Length = 145

>gnl|CDD|240046 cd04690, Nudix_Hydrolase_31, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 16/27 (59%), Positives = 23/27 (85%)

Query: 88  FPGGLVDAGESPLEALNRELNEEINLN 114
            PGG ++AGE+PL+AL REL+EE+ L+
Sbjct: 27  LPGGKIEAGETPLQALIRELSEELGLD 53

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|239643 cd03671, Ap4A_hydrolase_plant_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%)

Query: 50  GYHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNE 109
            Y  +  ++    D K+F     R     ++   G   FP G +D GE P +A  REL E
Sbjct: 1   PYRPNVGVVLFNEDGKVFV---GR-----RIDTPGAWQFPQGGIDEGEDPEQAALRELEE 52

Query: 110 EINLNPK 116
           E  L+P 
Sbjct: 53  ETGLDPD 59

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variations. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 147

>gnl|CDD|223568 COG0494, MutT, NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

 Score = 47.5 bits (112), Expect = 6e-07
 Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 76  VLMQMRFD--GYIGFPGGLVDAGESPL-EALNRELNEEINLNPKY 117
           VL+  R D  G    PGG V+ GE    EA  REL EE  L  K 
Sbjct: 26  VLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVKD 70

Length = 161

>gnl|CDD|239519 cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

 Score = 45.6 bits (109), Expect = 2e-06
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 9/52 (17%)

Query: 75  NVLMQMR-----FDGYIGFPGGLVDAGESPLEALNRELNEEINL---NPKYK 118
            VL+  R     + G+ G PGG V+ GE+P E   REL EE  L   N K  
Sbjct: 13  KVLLLNRKKGPGWGGWNG-PGGKVEPGETPEECAIRELKEETGLTIDNLKLV 63

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a much deeper and narrower substrate binding pocket. Mechanistically, MTH1 contains dual specificity for nucleotides that contain 2-OH-adenine bases and those that contain 8-oxo-guanine bases. Length = 137

>gnl|CDD|182721 PRK10776, PRK10776, nucleoside triphosphate pyrophosphohydrolase; Provisional

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 11/79 (13%)

Query: 64  DKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSD 123
           ++IF T  A A+  M     G   FPGG ++AGE+P +AL REL EE+ +     V+ + 
Sbjct: 16  NEIFITRRA-ADAHMA----GKWEFPGGKIEAGETPEQALIRELQEEVGIT----VQHAT 66

Query: 124 LV-CIHYSQSKKII-LHFY 140
           L   + Y    + I L F+
Sbjct: 67  LFEKLEYEFPDRHITLWFW 85

Length = 129

>gnl|CDD|240047 cd04691, Nudix_Hydrolase_32, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 43.6 bits (103), Expect = 8e-06
 Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 20/94 (21%)

Query: 55  HCMIFA-YNDDKIFATYTARANVLMQMR------FDGYIGFPGGLVDAGESPLEALNREL 107
           H ++   ++DDK          VL++ R        G +  PGG ++AGES  EAL RE+
Sbjct: 1   HGVVGVLFSDDK----------VLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREV 50

Query: 108 NEEINLNPKYKVKDSDLVCIHYSQSKKIILHFYA 141
            EE+ ++P   +  + L  +++  S+  +LH+Y 
Sbjct: 51  QEELGVDP---LSYTYLCSLYHPTSELQLLHYYV 81

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 117

>gnl|CDD|236361 PRK08999, PRK08999, hypothetical protein; Provisional

 Score = 45.2 bits (108), Expect = 8e-06
 Identities = 15/28 (53%), Positives = 19/28 (67%)

Query: 84  GYIGFPGGLVDAGESPLEALNRELNEEI 111
           G   FPGG V+ GE+  +AL REL EE+
Sbjct: 32  GLWEFPGGKVEPGETVEQALARELQEEL 59

Length = 312

>gnl|CDD|240033 cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 76  VLMQMRFDGYI-GFPGGLVDAGESPLEALNRELNEEINL 113
           VL+Q R D    G PGG ++ GES  E   REL EE  L
Sbjct: 21  VLLQKRSDTGDWGLPGGAMELGESLEETARRELKEETGL 59

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 132

>gnl|CDD|240042 cd04686, Nudix_Hydrolase_27, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 9/49 (18%)

Query: 63  DDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEI 111
            DKI   YT R           Y  FPGG V+ GE  +E L REL EE 
Sbjct: 10  GDKILLLYTKRYG--------DY-KFPGGGVEKGEDHIEGLIRELQEET 49

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 131

>gnl|CDD|182536 PRK10546, PRK10546, pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 10/73 (13%)

Query: 88  FPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQSKKIILHFYALQVEKT 147
           F GG V+ GES  +AL REL EE+ +    +    + V  H  +     +H +A  V   
Sbjct: 34  FAGGKVEPGESQPQALIRELREELGI----EATVGEYVASHQREVSGRRIHLHAWHVPD- 88

Query: 148 DVLEIEKGALTSH 160
                  G L +H
Sbjct: 89  -----FHGELQAH 96

Length = 135

>gnl|CDD|240032 cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 75  NVLMQMRFD-GYIGFPGGLVDAGESPLEALNRELNEE 110
            VL+  R D G    PGG V+ GESP +   RE+ EE
Sbjct: 15  RVLLIRRSDNGLWALPGGAVEPGESPADTAVREVREE 51

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|240030 cd04673, Nudix_Hydrolase_15, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 15/30 (50%), Positives = 18/30 (60%)

Query: 84  GYIGFPGGLVDAGESPLEALNRELNEEINL 113
           G   FPGG V+ GE+  +A  REL EE  L
Sbjct: 25  GLWSFPGGKVELGETLEQAALRELLEETGL 54

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 122

>gnl|CDD|240025 cd04667, Nudix_Hydrolase_10, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 40.4 bits (95), Expect = 9e-05
 Identities = 14/27 (51%), Positives = 18/27 (66%)

Query: 88  FPGGLVDAGESPLEALNRELNEEINLN 114
            PGG ++ GE+PL+A  REL EE  L 
Sbjct: 25  LPGGKIEPGETPLQAARRELQEETGLQ 51

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 112

>gnl|CDD|239520 cd03428, Ap4A_hydrolase_human_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 77  LMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKY 117
           L+Q    G+  FP G V+ GE  LEA  RE  EE  +  + 
Sbjct: 21  LLQAS-YGHWDFPKGHVEPGEDDLEAALRETEEETGITAEQ 60

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and catalytic site, and a required divalent cation, Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variation. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies. Length = 130

>gnl|CDD|240037 cd04681, Nudix_Hydrolase_22, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 17/30 (56%), Positives = 19/30 (63%)

Query: 84  GYIGFPGGLVDAGESPLEALNRELNEEINL 113
           G +  PGG VD GES  EAL RE+ EE  L
Sbjct: 27  GTLDLPGGFVDPGESAEEALIREIREETGL 56

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 130

>gnl|CDD|239518 cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 84  GYIGFPGGLVDAG-ESPLEALNRELNEEINLNP 115
           G + FPGG VD G E P+    RE  EEI L P
Sbjct: 32  GQVAFPGGKVDPGDEDPVATALREAEEEIGLPP 64

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules. Length = 157

>gnl|CDD|240022 cd04664, Nudix_Hydrolase_7, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 69  TYTARAN--VLMQMRFDGYIGFPGGL---VDAGESPLEALNRELNEEINLNP 115
            Y       VL+  R D Y GF   +   ++ GESP EA  RE+ EE  L+P
Sbjct: 8   PYRLTGEGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDP 59

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 129

>gnl|CDD|200031 TIGR00586, mutt, mutator mutT protein

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 16/79 (20%)

Query: 62  NDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKD 121
           N++      T RA+  M   F   + FPGG  + GE+P +A+ REL EEI +        
Sbjct: 13  NENGEIII-TRRADGHM---FAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQ------ 62

Query: 122 SDLVCIHYSQSKKIILHFY 140
                 H+S+ +K+   FY
Sbjct: 63  ------HFSEFEKLEYEFY 75

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Lowering the threshold picks up members of MutT superfamily well [DNA metabolism, DNA replication, recombination, and repair]. Length = 128

>gnl|CDD|240023 cd04665, Nudix_Hydrolase_8, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 20/83 (24%), Positives = 29/83 (34%), Gaps = 12/83 (14%)

Query: 88  FPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQSKKIILHFYALQVEKT 147
           FPGG V+ GE+  EA  RE+ EE         +   L  + Y       +  +    E  
Sbjct: 25  FPGGHVEPGETIEEAARREVWEET------GAELGSLTLVGY-----YQVDLFESGFETL 73

Query: 148 DVLEIEKGALTSHDYGVEVLGTV 170
               +         Y +E  G V
Sbjct: 74  VYPAVSAQLEEKASY-LETDGPV 95

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 118

>gnl|CDD|240040 cd04684, Nudix_Hydrolase_25, Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 6/51 (11%)

Query: 60  AYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEE 110
              D K+            + R+D     PGG ++ GESP EAL+RE+ EE
Sbjct: 7   IPRDGKLLLIQKNGGPY--EGRWD----LPGGGIEPGESPEEALHREVLEE 51

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 128

>gnl|CDD|240026 cd04669, Nudix_Hydrolase_11, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.6 bits (90), Expect = 5e-04
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 4/42 (9%)

Query: 76  VLMQMRFDG---YIGFPGGLVDAGESPLEALNRELNEEINLN 114
           +L++ R      Y  FPGG ++ GE+P EA  RE  EE+ L+
Sbjct: 15  LLIR-RIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLD 55

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 121

>gnl|CDD|240039 cd04683, Nudix_Hydrolase_24, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 9/58 (15%)

Query: 76  VLMQMRF-----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIH 128
           VL+Q R      DG    P G ++ GE  + A  RE  EEI +     +   DL   H
Sbjct: 13  VLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVT----LDPEDLRLAH 66

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|131752 TIGR02705, nudix_YtkD, nucleoside triphosphatase YtkD

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 26/92 (28%)

Query: 86  IGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHY-------SQSKKIILH 138
           + FPGG V+ GE+  EA  RE+ EE        VK+     +HY        +S   +  
Sbjct: 47  LEFPGGKVEPGETSKEAAIREVMEETGA----IVKE-----LHYIGQYEVEGESTDFVKD 97

Query: 139 FYALQVEKTDVLEIEKGALTSHDYGVEVLGTV 170
            Y  +V           AL S D  +E  G V
Sbjct: 98  VYFAEVS----------ALESKDDYLETKGPV 119

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference , both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it [DNA metabolism, DNA replication, recombination, and repair]. Length = 156

>gnl|CDD|240048 cd04692, Nudix_Hydrolase_33, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 20/82 (24%)

Query: 51  YH-ASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPG-------GLVDAGESPLEA 102
           +H   HC I   ++ K +        VL+Q R      +PG       G + AGE+PLE 
Sbjct: 1   WHRTFHCWIITKDEGKGY--------VLLQKRSANKKTYPGLWDISSAGHILAGETPLED 52

Query: 103 LNRELNEEINLNPKYKVKDSDL 124
             REL EE+ L     V   DL
Sbjct: 53  GIRELEEELGL----DVSADDL 70

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 144

>gnl|CDD|240041 cd04685, Nudix_Hydrolase_26, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 14/22 (63%), Positives = 16/22 (72%)

Query: 89  PGGLVDAGESPLEALNRELNEE 110
           PGG V+ GESP +A  REL EE
Sbjct: 33  PGGGVEPGESPEQAARRELREE 54

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 133

>gnl|CDD|240036 cd04680, Nudix_Hydrolase_21, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 87  GFPGGLVDAGESPLEALNRELNEEINL 113
             PGG ++ GE+  EA  REL EE+ +
Sbjct: 26  YLPGGGLERGETFAEAARRELLEELGI 52

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 120

>gnl|CDD|240052 cd04696, Nudix_Hydrolase_37, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

 Score = 36.3 bits (84), Expect = 0.003
 Identities = 15/27 (55%), Positives = 17/27 (62%)

Query: 87  GFPGGLVDAGESPLEALNRELNEEINL 113
           G PGG V+ GE+  EAL RE  EE  L
Sbjct: 29  GVPGGKVEWGETLEEALKREFREETGL 55

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. Length = 125

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	232
PRK11762	185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.89
PRK15009	191	GDP-mannose pyrophosphatase NudK; Provisional	99.86
PRK10729	202	nudF ADP-ribose pyrophosphatase NudF; Provisional	99.85
TIGR00052	185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	99.85
cd04679	125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.82
cd04683	120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.79
cd03430	144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.78
cd04696	125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.78
cd04700	142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.78
cd03673	131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.77
PRK09438	148	nudB dihydroneopterin triphosphate pyrophosphatase	99.77
cd03671	147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.77
cd04681	130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.76
cd04691	117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.76
PRK15434	159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.76
cd04684	128	Nudix_Hydrolase_25 Contains a crystal structure of	99.76
cd03674	138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.76
cd04669	121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.76
cd04678	129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.76
cd04680	120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.75
cd04687	128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.75
cd04688	126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.75
PLN02325	144	nudix hydrolase	99.75
cd04673	122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.75
cd04692	144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.75
cd04677	132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.75
cd03428	130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.75
cd04672	123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.74
PRK15472	141	nucleoside triphosphatase NudI; Provisional	99.74
cd04671	123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.74
cd04695	131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.74
cd03672	145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.74
cd03675	134	Nudix_Hydrolase_2 Contains a crystal structure of	99.73
PRK00714	156	RNA pyrophosphohydrolase; Reviewed	99.73
cd02885	165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.73
cd04697	126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.73
cd03427	137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.72
cd04682	122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.72
cd04664	129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.72
cd04666	122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.72
cd04689	125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.72
COG1051	145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.72
cd03426	157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.72
PF00293	134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.71
cd04693	127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.71
cd03424	137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.71
cd04670	127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.71
cd04511	130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.71
cd04667	112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.71
cd04676	129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.7
cd04690	118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.7
cd03429	131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.7
PRK00241	256	nudC NADH pyrophosphatase; Reviewed	99.69
cd04686	131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.69
cd04661	132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.68
PRK15393	180	NUDIX hydrolase YfcD; Provisional	99.68
TIGR02150	158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.68
PRK03759	184	isopentenyl-diphosphate delta-isomerase; Provision	99.66
cd04685	133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.66
cd03676	180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	99.65
cd04699	129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.65
TIGR02705	156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	99.65
PRK10707	190	putative NUDIX hydrolase; Provisional	99.65
cd04662	126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.64
PRK10546	135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.64
PLN03143	291	nudix hydrolase; Provisional	99.63
PRK10776	129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.61
cd04694	143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.61
PRK05379	340	bifunctional nicotinamide mononucleotide adenylylt	99.6
cd04663	126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	99.59
TIGR00586	128	mutt mutator mutT protein. All proteins in this fa	99.59
KOG3041|consensus	225		99.58
cd02883	123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.58
cd04665	118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	99.58
cd04674	118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	99.54
PLN02709	222	nudix hydrolase	99.53
cd03425	124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.52
COG2816	279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	99.49
cd03670	186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	99.46
PLN02791	770	Nudix hydrolase homolog	99.46
PLN02552	247	isopentenyl-diphosphate delta-isomerase	99.44
PRK08999	312	hypothetical protein; Provisional	99.38
KOG2839|consensus	145		99.26
COG0494	161	MutT NTP pyrophosphohydrolases including oxidative	99.2
KOG3084|consensus	345		99.19
KOG3069|consensus	246		99.13
COG1443	185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	98.92
PLN02839	372	nudix hydrolase	98.79
COG4119	161	Predicted NTP pyrophosphohydrolase [DNA replicatio	98.77
cd03431	118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	98.71
KOG0648|consensus	295		98.66
PF14815	114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	97.97
KOG4195|consensus	275		97.76
KOG0142|consensus	225		97.72
KOG4432|consensus	405		97.64
PF13869	188	NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B	97.04
COG4112	203	Predicted phosphoesterase (MutT family) [General f	96.47
KOG2937|consensus	348		96.14
KOG4432|consensus	405		95.85
KOG1689|consensus	221		95.32
KOG4313|consensus	306		94.96
PRK10880	350	adenine DNA glycosylase; Provisional	90.71
KOG4548|consensus	263		88.46

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional

Probab=99.89  E-value=2.1e-22  Score=160.44  Aligned_cols=147  Identities=22%  Similarity=0.242  Sum_probs=100.1

Q ss_pred             CCCcccccceeeeeecCCccCcc-ccccccCCcccccccCC--ccceEEEEEEecCCceEEEEeccCcEEEEEEee---C
Q psy7748          10 TWGSSAWNLAATEVYGRPSTNLN-DFIELTQSDLKDDKYKS--GYHASHCMIFAYNDDKIFATYTARANVLMQMRF---D   83 (232)
Q Consensus        10 ~w~~~~~~~~~~~vy~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~---~   83 (232)
                      +|+.    ++++++|+++|++++ +.+++|+|....+....  ...+++++++..++.++         ++.|+|+   .
T Consensus         7 ~~~~----~~~~~v~~~~~~~v~~~~~~~~~G~~~~~~~v~~~~~~~v~v~~~~~~~~vl---------Lvrq~r~~~~~   73 (185)
T PRK11762          7 KPEI----LNRETVAKSRLFRVESVDLEFSNGVERVYERMRPSGRGAVMIVPILDDDTLL---------LIREYAAGTER   73 (185)
T ss_pred             CCEE----eeEEEEEeCCEEEEEEEEEEcCCCCEEEEEEEecCCCCEEEEEEEeCCCEEE---------EEEeecCCCCC
Confidence            6777    999999999999999 89999999876655422  23345555565443221         2233343   3


Q ss_pred             CeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCC
Q psy7748          84 GYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDY  162 (232)
Q Consensus        84 g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (232)
                      +.|+||||.+|+||++++||+||++||||+.+. +..+...+.....   ....+++|.+........        ..+ 
T Consensus        74 ~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~~---~~~~~~~f~a~~~~~~~~--------~~~-  141 (185)
T PRK11762         74 YELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSLAPSY---FSSKMNIVLAEDLYPERL--------EGD-  141 (185)
T ss_pred             cEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEecCCCc---cCcEEEEEEEEccccccC--------CCC-
Confidence            579999999999999999999999999999998 6555444433222   223444444432211110        112 


Q ss_pred             CccceeeEeeeCccccccc
Q psy7748         163 GVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       163 ~~E~~~~~wvpl~el~~~i  181 (232)
                      +.|.+++.|+|++++.+++
T Consensus       142 e~E~i~~~~~~~~e~~~~~  160 (185)
T PRK11762        142 EPEPLEVVRWPLADLDELL  160 (185)
T ss_pred             CCceeEEEEEcHHHHHHHH
Confidence            2578899999999999886

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional

Probab=99.86  E-value=2.5e-21  Score=154.40  Aligned_cols=169  Identities=12%  Similarity=0.146  Sum_probs=115.2

Q ss_pred             ceeeeeecCCccCcc-cc--ccccCCcc--cccccCCccceEEEEEEecCCceEEEEeccCcEEEEEEeeC-------C-
Q psy7748          18 LAATEVYGRPSTNLN-DF--IELTQSDL--KDDKYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMRFD-------G-   84 (232)
Q Consensus        18 ~~~~~vy~~~~~~~~-~~--~~~~~~~~--~~~~~~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~-------g-   84 (232)
                      +.++.+|+++||+++ +.  +.+|+|..  ..+....+..++++++++++++.+        .++.|+|++       + 
T Consensus         7 ~~~~~~~~~~~~~v~~~~~~~~~pdG~~~~~~r~vv~~~~~v~Vl~~~~~~~~v--------vLvrQyR~~v~~~~~~~~   78 (191)
T PRK15009          7 LIKDKILSDNYFTLHNITYDLTRKDGEVIRHKREVYDRGNGATILLYNAKKKTV--------VLIRQFRVATWVNGNESG   78 (191)
T ss_pred             EEEEEEEeCCeEEEEEEEEEEECCCCCccceEEEEEEECCEEEEEEEECCCCEE--------EEEEcccccccccCCCCc
Confidence            678899999999999 55  56799974  333446667788888887644332        245666643       3 


Q ss_pred             -eeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCC
Q psy7748          85 -YIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDY  162 (232)
Q Consensus        85 -~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (232)
                       .|++|+|.+|+| +|++||+|||+||||+.+. +..+...+..++..   ....++|.+.........     ....++
T Consensus        79 ~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l~~~~~spG~s---~e~~~lf~a~~~~~~~~~-----~~~~de  149 (191)
T PRK15009         79 QLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKLFELYMSPGGV---TELIHFFIAEYSDSQRAN-----AGGGVE  149 (191)
T ss_pred             eEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEeeEEEcCCccc---CcEEEEEEEEECchhccc-----CCCCCC
Confidence             689999999976 6999999999999999998 66555555555443   345566666543211110     011223


Q ss_pred             CccceeeEeeeCcccccccCCchHHHHHHHHHHHHHHH-HHHHHhCCCCC
Q psy7748         163 GVEVLGTVRVPLYTMGDGFRGLPCFLTHSFIGNAKHQL-LAALLKLKILS  211 (232)
Q Consensus       163 ~~E~~~~~wvpl~el~~~i~~~~~~l~~~~i~~~~~~l-~~~l~~~~~~~  211 (232)
                       +|.+++.|+|++++.+++       .++-+.+++..+ +..+..+++|+
T Consensus       150 -~E~iev~~~~~~e~~~~i-------~~G~i~da~ti~al~~~~~~~~~~  191 (191)
T PRK15009        150 -DEDIEVLELPFSQALEMI-------KTGEIRDGKTVLLLNYLQTSHLMD  191 (191)
T ss_pred             -CceEEEEEEcHHHHHHHH-------HcCCCCcHHHHHHHHHHHHhccCC
Confidence             589999999999999986       445555555543 55666667764

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional

Probab=99.85  E-value=6.2e-21  Score=153.54  Aligned_cols=153  Identities=17%  Similarity=0.074  Sum_probs=104.3

Q ss_pred             CCCCCcccccceeeeeecCCccCcc-ccc--cccCCc---ccccccCCccceEEEEEEecCCceEEEEeccCcEEEEEEe
Q psy7748           8 DRTWGSSAWNLAATEVYGRPSTNLN-DFI--ELTQSD---LKDDKYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMR   81 (232)
Q Consensus         8 ~~~w~~~~~~~~~~~vy~~~~~~~~-~~~--~~~~~~---~~~~~~~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R   81 (232)
                      .+.|..    ++++++|++ |++++ +.+  .+|+|.   ...+....+..++++++++++++.|        .++.|+|
T Consensus         5 ~~~~~~----~~~~~v~~~-~~~v~~~~~~~~~~~G~~~~~~~~~vv~~~~~V~il~~~~~~~~v--------lLvrQyR   71 (202)
T PRK10729          5 KNDVEI----IARETLYRG-FFSLDLYRFRHRLFNGEMSGEVRREIFERGHAAVLLPFDPVRDEV--------VLIEQIR   71 (202)
T ss_pred             CCceEE----EEEEEEEcC-eEEEEEEEEEEEecCCccccEEeEEEEEcCCeEEEEEEECCCCEE--------EEEEeee
Confidence            445777    899999996 78786 444  357775   2333445566777777787653222        3466778


Q ss_pred             eC--------CeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCccccc
Q psy7748          82 FD--------GYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEI  152 (232)
Q Consensus        82 ~~--------g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (232)
                      ++        ..|++|+|.+|+||++++||+|||.||||+.+. +..+..++..++   ......++|.+......... 
T Consensus        72 ~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~~~~~spg---~~~e~~~~fla~~~~~~~~~-  147 (202)
T PRK10729         72 IAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVLSYLASPG---GTSERSSIMVGEVDATTASG-  147 (202)
T ss_pred             cccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEEEEEcCCC---cCceEEEEEEEEEcchhccc-
Confidence            54        269999999999999999999999999999988 655544444433   33456677777642211110 


Q ss_pred             ccccccccCCCccceeeEeeeCccccccc
Q psy7748         153 EKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       153 ~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                          .....++.|.+++.|+|++++.+++
T Consensus       148 ----~~~~~de~E~i~v~~~~~~e~~~~~  172 (202)
T PRK10729        148 ----IHGLADENEDIRVHVVSREQAYQWV  172 (202)
T ss_pred             ----CCCCCCCCCceEEEEEcHHHHHHHH
Confidence                0011123588999999999999886

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family

Probab=99.85  E-value=7.8e-21  Score=151.07  Aligned_cols=148  Identities=16%  Similarity=0.188  Sum_probs=101.2

Q ss_pred             cceeeeeecCCccCcc-c-ccccc-CCc--ccccccCCccceEEEEEEecCCceEEEEeccCcEEEEEEee--------C
Q psy7748          17 NLAATEVYGRPSTNLN-D-FIELT-QSD--LKDDKYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMRF--------D   83 (232)
Q Consensus        17 ~~~~~~vy~~~~~~~~-~-~~~~~-~~~--~~~~~~~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~--------~   83 (232)
                      .++++.+|+++|++++ + ....+ ++.  ...+.+.....++++++++.+++.++        ++.|+|+        +
T Consensus         5 ~l~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~v~vl~~~~~~~~vl--------Lvrq~R~~~~~~~~~~   76 (185)
T TIGR00052         5 IIIKDTLYSGFFSLLHNIFYHRLFKGGESIRVTREIYDRGNAAAVLLYDPKKDTVV--------LIEQFRIAAYVNGEEP   76 (185)
T ss_pred             EEEEEEEecCCcEEEEEEEEEEeeCCCCCceEEEEEEEcCCeEEEEEEECCCCEEE--------EEECceeeeeecCCcc
Confidence            3789999999999998 3 34554 542  33444456677888888876543332        3445552        3


Q ss_pred             CeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCC
Q psy7748          84 GYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDY  162 (232)
Q Consensus        84 g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (232)
                      +.|++|||++++||++++||+||++||||+.+. +..+...+...+   ......++|.+..........     ...++
T Consensus        77 ~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~~~~~~g---~~~~~~~~f~a~~~~~~~~~~-----~~~~~  148 (185)
T TIGR00052        77 WLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLSFYSSPG---GVTELIHLFIAEVDDNQAAGI-----GGGAD  148 (185)
T ss_pred             eEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEEEEcCCC---CCcEEEEEEEEEEchhhcCCC-----CCCCC
Confidence            589999999999999999999999999999998 554444333322   335667777877654322111     11222


Q ss_pred             CccceeeEeeeCccccccc
Q psy7748         163 GVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       163 ~~E~~~~~wvpl~el~~~i  181 (232)
                       .|.+++.|+|++++.+++
T Consensus       149 -~E~ie~~~~~~~e~~~~~  166 (185)
T TIGR00052       149 -EEEIEVLHLVFSQALQWI  166 (185)
T ss_pred             -ccceEEEEeCHHHHHHHH
Confidence             467899999999999886

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.82  E-value=1.9e-19  Score=134.32  Aligned_cols=110  Identities=18%  Similarity=0.165  Sum_probs=79.2

Q ss_pred             cceEEEEEEecCCceEEEEeccCcEEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceee
Q psy7748          51 YHASHCMIFAYNDDKIFATYTARANVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLV  125 (232)
Q Consensus        51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~  125 (232)
                      +.+|++++++.++           .+|+++|.    +|.|.+|||++++||++++||+||++||||+.+. ..++.....
T Consensus         2 ~~~~~~~i~~~~~-----------~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~~~   70 (125)
T cd04679           2 RVGCGAAILRDDG-----------KLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVDH   70 (125)
T ss_pred             ceEEEEEEECCCC-----------EEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEEEee
Confidence            5678888888653           46666663    4799999999999999999999999999999987 444333222


Q ss_pred             eeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         126 CIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      . ......+.+.++|.+....+.....        + ..|..++.|++++++++.+
T Consensus        71 ~-~~~~~~~~~~~~f~~~~~~~~~~~~--------~-~~E~~~~~W~~~~~l~~~l  116 (125)
T cd04679          71 I-IEEPPQHWVAPVYLAENFSGEPRLM--------E-PDKLLELGWFALDALPQPL  116 (125)
T ss_pred             c-ccCCCCeEEEEEEEEeecCCccccC--------C-CccccEEEEeCHHHCCchh
Confidence            1 1112446777888887654432211        1 1478899999999999865

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.79  E-value=1.3e-18  Score=128.73  Aligned_cols=97  Identities=22%  Similarity=0.263  Sum_probs=68.0

Q ss_pred             EEEEEEee-----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc---ceeeeceeeeeeecCCcEEEEEEEEEEeec
Q psy7748          75 NVLMQMRF-----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK---YKVKDSDLVCIHYSQSKKIILHFYALQVEK  146 (232)
Q Consensus        75 ~vLl~~R~-----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (232)
                      ++|+++|.     +|.|++|||++++||++.+||+||++||||+.+.   .......+...  ....+.+.++|.+....
T Consensus        12 ~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~--~~~~~~~~~~f~~~~~~   89 (120)
T cd04683          12 EVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRT--EDIESRIGLFFTVRRWS   89 (120)
T ss_pred             EEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecC--CCCceEEEEEEEEEeec
Confidence            56777763     4799999999999999999999999999999976   22222222111  11245667788887644


Q ss_pred             CcccccccccccccCCCccceeeEeeeCcccccccC
Q psy7748         147 TDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFR  182 (232)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~  182 (232)
                      +.+...        + .+|..++.|+|++++++.+.
T Consensus        90 ~~~~~~--------~-~~e~~~~~W~~~~~l~~~~~  116 (120)
T cd04683          90 GEPRNC--------E-PDKCAELRWFPLDALPDDTV  116 (120)
T ss_pred             CccccC--------C-CCcEeeEEEEchHHCcchhc
Confidence            332221        1 24788999999999998753

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily

Probab=99.78  E-value=2.6e-18  Score=131.54  Aligned_cols=109  Identities=16%  Similarity=0.114  Sum_probs=77.2

Q ss_pred             cceEEEEEEecCCceEEEEeccCcEEEEEEe----eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-c--eeeece
Q psy7748          51 YHASHCMIFAYNDDKIFATYTARANVLMQMR----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-Y--KVKDSD  123 (232)
Q Consensus        51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R----~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~--~~~~~~  123 (232)
                      ..+++++|++.+           +++|+++|    ++|+|.+|||+++.|||+++||+||++||||+.+. .  .++...
T Consensus        12 ~v~v~~vI~~~~-----------g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~   80 (144)
T cd03430          12 LVSIDLIVENED-----------GQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVF   80 (144)
T ss_pred             eEEEEEEEEeCC-----------CeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEEEE
Confidence            346777777765           35677777    35899999999999999999999999999999986 4  333322


Q ss_pred             ee-ee----eecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         124 LV-CI----HYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       124 ~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      .. +.    ......+.+.++|.+....+.....          +.|..++.|+++++++.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~e~~~~~W~~~~el~~~  132 (144)
T cd03430          81 EHFYDDNFFGDDFSTHYVVLGYVLKLSSNELLLP----------DEQHSEYQWLTSDELLAD  132 (144)
T ss_pred             EEEeccccccCCCccEEEEEEEEEEEcCCcccCC----------chhccEeEEecHHHHhcC
Confidence            11 11    1111336677788887765443211          258889999999999875

This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.78  E-value=1.7e-18  Score=129.26  Aligned_cols=107  Identities=24%  Similarity=0.338  Sum_probs=71.7

Q ss_pred             ceEEEEEEecCCceEEEEeccCcEEEEEEe--eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeec-eeee-
Q psy7748          52 HASHCMIFAYNDDKIFATYTARANVLMQMR--FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDS-DLVC-  126 (232)
Q Consensus        52 ~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R--~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~-~~~~-  126 (232)
                      .++++++++.++           ++|+++|  ++|.|++|||+++.|||+.+||+||++||||+++. ..+... .+.+ 
T Consensus         3 ~~v~~~i~~~~~-----------~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~   71 (125)
T cd04696           3 VTVGALIYAPDG-----------RILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQEAIFS   71 (125)
T ss_pred             cEEEEEEECCCC-----------CEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEEEEEecc
Confidence            356777777553           4555555  46899999999999999999999999999999987 433222 1111 


Q ss_pred             eeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         127 IHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      .......+.+.+.|.+.........           +.|..++.|+|++++.++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~e~~~~~W~~~~el~~~  114 (125)
T cd04696          72 EEFHKPAHFVLFDFFARTDGTEVTP-----------NEEIVEWEWVTPEEALDY  114 (125)
T ss_pred             CCCCCccEEEEEEEEEEecCCcccC-----------CcccceeEEECHHHHhcC
Confidence            1111223455555666544322111           247899999999999876

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities

Probab=99.78  E-value=2.7e-18  Score=131.09  Aligned_cols=113  Identities=19%  Similarity=0.232  Sum_probs=77.3

Q ss_pred             CCccceEEEEEEecCCceEEEEeccCcEEEEEEe---eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeece
Q psy7748          48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMR---FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSD  123 (232)
Q Consensus        48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R---~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~  123 (232)
                      +....++++++++.++.+          +|++++   .+|.|+||||++++|||+++||+||++||||+++. ...+...
T Consensus        10 ~~~~~av~~vv~~~~~~v----------LL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~   79 (142)
T cd04700          10 EVEARAAGAVILNERNDV----------LLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGTY   79 (142)
T ss_pred             ceeeeeEEEEEEeCCCcE----------EEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEEEE
Confidence            455678888988865332          233434   24789999999999999999999999999999987 4433322


Q ss_pred             eeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         124 LVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                       ... .........++|.+........+.        . +.|+.++.|+|++++.+++
T Consensus        80 -~~~-~~~~~~~~~~~f~~~~~~~~~~~~--------~-~~E~~~~~w~~~~el~~~~  126 (142)
T cd04700          80 -LGR-FDDGVLVLRHVWLAEPEGQTLAPK--------F-TDEIAEASFFSREDVAQLY  126 (142)
T ss_pred             -EEE-cCCCcEEEEEEEEEEecCCccccC--------C-CCCEEEEEEECHHHhhhcc
Confidence             111 122234455777777643321111        1 2489999999999999986

Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.77  E-value=1.7e-18  Score=129.79  Aligned_cols=113  Identities=19%  Similarity=0.227  Sum_probs=79.0

Q ss_pred             ceEEEEEEecCCceEEEEeccCcEEEEEEeeC-CeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeec-eeeeee
Q psy7748          52 HASHCMIFAYNDDKIFATYTARANVLMQMRFD-GYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDS-DLVCIH  128 (232)
Q Consensus        52 ~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~-g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~-~~~~~~  128 (232)
                      .++++++++.+.        ++++||+.+|.. +.|.||||++++||++.+||.||++||||+.+. ...+.. .+....
T Consensus         2 ~~a~~ii~~~~~--------~~~~vLl~~~~~~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~   73 (131)
T cd03673           2 LAAGGVVFRGSD--------GGIEVLLIHRPRGDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYWFSS   73 (131)
T ss_pred             eeEEEEEEEccC--------CCeEEEEEEcCCCCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEEEEEEeccC
Confidence            567888887642        235677877755 599999999999999999999999999999987 433322 222221


Q ss_pred             ecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         129 YSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      .....+...++|.+.........        . .+.|..++.|+|++++.+++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~E~~~~~W~~~~el~~~~  117 (131)
T cd03673          74 SGKRVHKTVHWWLMRALGGEFTP--------Q-PDEEVDEVRWLPPDEARDRL  117 (131)
T ss_pred             CCCCcceEEEEEEEEEcCCCccc--------C-CCCcEEEEEEcCHHHHHHHc
Confidence            11133556677777665443322        0 12588999999999998875

Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional

Probab=99.77  E-value=3.1e-18  Score=131.60  Aligned_cols=110  Identities=16%  Similarity=0.173  Sum_probs=74.3

Q ss_pred             ccceEEEEEEecCCceEEEEeccCcEEEEEEe--eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCC--c-ceeeec--
Q psy7748          50 GYHASHCMIFAYNDDKIFATYTARANVLMQMR--FDGYIGFPGGLVDAGESPLEALNRELNEEINLNP--K-YKVKDS--  122 (232)
Q Consensus        50 ~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R--~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~--~-~~~~~~--  122 (232)
                      .+.++++++++.++           .+|+.+|  .++.|++|||++|.|||+.+||+||++||||+.+  . ..+...  
T Consensus         6 ~~~~v~~vi~~~~~-----------~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~   74 (148)
T PRK09438          6 RPVSVLVVIYTPDL-----------GVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQR   74 (148)
T ss_pred             CceEEEEEEEeCCC-----------eEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeeccccc
Confidence            46678888888663           3455555  3578999999999999999999999999999998  3 222210  


Q ss_pred             --eeee------eeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         123 --DLVC------IHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       123 --~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                        .+.+      ....+..+...++|.+....+.. ..         . +|..++.|+|++++.++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~---------~-~E~~~~~W~~~~e~~~~~  130 (148)
T PRK09438         75 SIEYEIFPHWRHRYAPGVTRNTEHWFCLALPHERP-VV---------L-TEHLAYQWLDAREAAALT  130 (148)
T ss_pred             ccccccchhhhhccccccCCceeEEEEEecCCCCc-cc---------c-CcccceeeCCHHHHHHHh
Confidence              0100      00111235566778776543211 11         1 378999999999999875

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.77  E-value=7.3e-18  Score=129.43  Aligned_cols=118  Identities=25%  Similarity=0.290  Sum_probs=77.7

Q ss_pred             ccceEEEEEEecCCceEEEEeccCcEEEEEEeeC--CeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeece---
Q psy7748          50 GYHASHCMIFAYNDDKIFATYTARANVLMQMRFD--GYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSD---  123 (232)
Q Consensus        50 ~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~--g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~---  123 (232)
                      ++.++++++++.+           +.+|+++|..  +.|.+|||++++||++.+||.||++||||+.+. ..++...   
T Consensus         2 ~~~~v~~ii~~~~-----------~~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~~~   70 (147)
T cd03671           2 YRPNVGVVLFNED-----------GKVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDW   70 (147)
T ss_pred             CCceEEEEEEeCC-----------CEEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcCCe
Confidence            5678899998866           3567777744  699999999999999999999999999999986 4433321   


Q ss_pred             eeeeeecC---------CcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccccCC
Q psy7748         124 LVCIHYSQ---------SKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRG  183 (232)
Q Consensus       124 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~  183 (232)
                      +.+.....         ......++|.+.+..... ...   .. .+++.|..++.|+|++++++++..
T Consensus        71 ~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~---l~-~~~~~E~~~~~W~~~~el~~~~~~  134 (147)
T cd03671          71 LRYDLPPELKLKIWGGRYRGQEQKWFLFRFTGDDS-EID---LN-APEHPEFDEWRWVPLEELPDLIVP  134 (147)
T ss_pred             eEeeChhhhhccccCCcCCCEEEEEEEEEecCCCc-ccc---CC-CCCCCCEeeEEeCCHHHHHHhchh
Confidence            11111100         112344566665543110 000   00 112358999999999999998633

Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=4.9e-18  Score=127.46  Aligned_cols=106  Identities=25%  Similarity=0.263  Sum_probs=72.3

Q ss_pred             eEEEEEEecCCceEEEEeccCcEEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeece-eee
Q psy7748          53 ASHCMIFAYNDDKIFATYTARANVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSD-LVC  126 (232)
Q Consensus        53 a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~-~~~  126 (232)
                      +++++++++++           ++|+++|.    +|.|.+|||+++.|||+.+||.||++||||+++. ...+... ..+
T Consensus         3 av~~~i~~~~~-----------~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~   71 (130)
T cd04681           3 AVGVLILNEDG-----------ELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNTY   71 (130)
T ss_pred             eEEEEEEcCCC-----------cEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeeccee
Confidence            56667777653           45666662    4799999999999999999999999999999987 4433222 111


Q ss_pred             eeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccc
Q psy7748         127 IHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGD  179 (232)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~  179 (232)
                      .......+...++|.+.+........          ..|..++.|+|+++++.
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~e~~~~~W~~~~el~~  114 (130)
T cd04681          72 PYGGMEYDTLDLFFVCQVDDKPIVKA----------PDDVAELKWVVPQDIEL  114 (130)
T ss_pred             eeCCceeEEEEEEEEEEeCCCCCcCC----------hHHhheeEEecHHHCCc
Confidence            11111234555677787654322211          24888999999999863

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=5.6e-18  Score=125.15  Aligned_cols=90  Identities=29%  Similarity=0.394  Sum_probs=64.8

Q ss_pred             EEEEEEe------eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecC
Q psy7748          75 NVLMQMR------FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKT  147 (232)
Q Consensus        75 ~vLl~~R------~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (232)
                      ++|+.+|      ++|.|+||||++++||++++||+||++||||+++. ...+...+..    .......++|.+....+
T Consensus        12 ~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~   87 (117)
T cd04691          12 KVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLCSLYHP----TSELQLLHYYVVTFWQG   87 (117)
T ss_pred             EEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEEEEEecc----CCCeEEEEEEEEEEecC
Confidence            5667666      34799999999999999999999999999999975 4332222211    12345667777765543


Q ss_pred             cccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         148 DVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       148 ~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      .+..            .|..++.|+|+++++.+
T Consensus        88 ~~~~------------~E~~~~~W~~~~~l~~~  108 (117)
T cd04691          88 EIPA------------QEAAEVHWMTANDIVLA  108 (117)
T ss_pred             CCCc------------ccccccEEcCHHHcchh
Confidence            3211            47889999999999865

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional

Probab=99.76  E-value=5.8e-18  Score=131.28  Aligned_cols=109  Identities=16%  Similarity=0.100  Sum_probs=75.0

Q ss_pred             ceEEEEEEecCCceEEEEeccCcEEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc---ceeeecee
Q psy7748          52 HASHCMIFAYNDDKIFATYTARANVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK---YKVKDSDL  124 (232)
Q Consensus        52 ~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~---~~~~~~~~  124 (232)
                      .++.++|.+..           +++|+.+|.    +|.|+||||+|++|||+++||+||++||||+.+.   ..+.....
T Consensus        18 ~~v~~vI~~~~-----------g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~~~   86 (159)
T PRK15434         18 ISLDFIVENSR-----------GEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQ   86 (159)
T ss_pred             EEEEEEEECCC-----------CEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEEEEE
Confidence            35566665543           467777773    4799999999999999999999999999999864   12222211


Q ss_pred             -eeeee--cC--CcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         125 -VCIHY--SQ--SKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       125 -~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                       .+...  ..  ..+++.++|.+....+.+....          .|..++.|+++++++...
T Consensus        87 ~~~~~~~~~~~~~~~~i~~~f~~~~~~g~~~~~~----------~E~~~~~W~~~~el~~~~  138 (159)
T PRK15434         87 HFYDDNFSGTDFTTHYVVLGFRLRVAEEDLLLPD----------EQHDDYRWLTPDALLASD  138 (159)
T ss_pred             eecccccCCCccceEEEEEEEEEEecCCcccCCh----------HHeeEEEEEeHHHhhhcc
Confidence             11111  11  2367777888887655443322          478999999999998753

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function

Probab=99.76  E-value=6.6e-18  Score=126.05  Aligned_cols=98  Identities=26%  Similarity=0.345  Sum_probs=68.1

Q ss_pred             EEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecC---CcEEEEEEEEEEeec
Q psy7748          75 NVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQ---SKKIILHFYALQVEK  146 (232)
Q Consensus        75 ~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  146 (232)
                      ++|+.+|.    +|.|.+|||+++.||++++||+||++||||+.+. ...+...........   ..+.+.++|.+....
T Consensus        12 ~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~   91 (128)
T cd04684          12 KLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGDYDAHHLCVFYDARVVG   91 (128)
T ss_pred             EEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCCeeccEEEEEEEEEEec
Confidence            56666663    3899999999999999999999999999999987 443333222111111   135677888887765


Q ss_pred             CcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         147 TDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      +...        ......|..++.|+|++++...
T Consensus        92 ~~~~--------~~~~~~e~~~~~W~~~~~l~~~  117 (128)
T cd04684          92 GALP--------VQEPGEDSHGAAWLPLDEAIER  117 (128)
T ss_pred             Cccc--------cCCCCCCceeeEEECHHHhhcc
Confidence            4321        0111247789999999999865

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=8.7e-18  Score=127.67  Aligned_cols=111  Identities=20%  Similarity=0.116  Sum_probs=72.8

Q ss_pred             cceEEEEEEecCCceEEEEeccCcEEEEEEe-eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeee-----ce
Q psy7748          51 YHASHCMIFAYNDDKIFATYTARANVLMQMR-FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKD-----SD  123 (232)
Q Consensus        51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R-~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~-----~~  123 (232)
                      +.+|++++++.+.          +++|+.+| ..|.|.+|||++++||++++||.||++||||+.+. .....     ..
T Consensus         2 ~~~~~~~v~~~~~----------~~vLLv~r~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~   71 (138)
T cd03674           2 HFTASAFVVNPDR----------GKVLLTHHRKLGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLDV   71 (138)
T ss_pred             cEEEEEEEEeCCC----------CeEEEEEEcCCCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccceecccccccee
Confidence            3567788887651          24455555 46899999999999999999999999999999876 43321     11


Q ss_pred             eeeeeecC----CcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         124 LVCIHYSQ----SKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       124 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      +.......    ....+.++|.+.+..+.....         .+.|..++.|+|++++..+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~---------~~~E~~~~~W~~~~el~~~  123 (138)
T cd03674          72 HPIDGHPKRGVPGHLHLDLRFLAVAPADDVAPP---------KSDESDAVRWFPLDELASL  123 (138)
T ss_pred             EeecCCCCCCCCCcEEEEEEEEEEccCccccCC---------CCCcccccEEEcHHHhhhc
Confidence            11111111    123344567776554433210         1248889999999999764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=7.2e-18  Score=125.29  Aligned_cols=98  Identities=22%  Similarity=0.265  Sum_probs=66.6

Q ss_pred             EEEEEEeeC---CeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCccc
Q psy7748          75 NVLMQMRFD---GYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVL  150 (232)
Q Consensus        75 ~vLl~~R~~---g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (232)
                      ++|+.+|.+   +.|+||||+++.|||+.+||+||++||||+++. ..++..   ...    .....++|.|....+.+.
T Consensus        13 ~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~---~~~----~~~~~~~f~~~~~~g~~~   85 (121)
T cd04669          13 EILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLI---VNQ----NGRTEHYFLARVISGKLG   85 (121)
T ss_pred             EEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeEEEE---Eee----CCcEEEEEEEEEECCeec
Confidence            567777743   689999999999999999999999999999987 333222   111    123467888877665543


Q ss_pred             ccccccccccCCCccceeeEeeeCcccccc
Q psy7748         151 EIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       151 ~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      ..........+ +.+..++.|+++++++++
T Consensus        86 ~~~~~e~~~~~-~~~~~~~~Wv~~~el~~l  114 (121)
T cd04669          86 LGVGEEFERQS-DDNQYHPVWVDLDQLETI  114 (121)
T ss_pred             CCCchhhcccC-CCCceEEEEEEHHHcccC
Confidence            22111111111 235678999999999976

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.76  E-value=9.6e-18  Score=125.74  Aligned_cols=111  Identities=18%  Similarity=0.166  Sum_probs=79.5

Q ss_pred             cceEEEEEEecCCceEEEEeccCcEEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceee
Q psy7748          51 YHASHCMIFAYNDDKIFATYTARANVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLV  125 (232)
Q Consensus        51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~  125 (232)
                      +.+++++|++.+           +++|+++|.    +|.|.+|||+++.|||+.+||.||++||||+++. .........
T Consensus         2 ~~~v~~ii~~~~-----------~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~~~~~   70 (129)
T cd04678           2 RVGVGVFVLNPK-----------GKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLTVTND   70 (129)
T ss_pred             ceEEEEEEECCC-----------CeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEEEEeE
Confidence            457788888875           356777774    5899999999999999999999999999999987 443332222


Q ss_pred             eeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         126 CIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      . ......+.+.++|.+...........      .+ .+|..++.|++++++.++
T Consensus        71 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~e~~~~~W~~~~~l~~~  117 (129)
T cd04678          71 V-FEEEGKHYVTIFVKAEVDDGEAEPNK------ME-PEKCEGWEWFDWEELPSV  117 (129)
T ss_pred             E-eCCCCcEEEEEEEEEEeCCCCcccCC------CC-CceeCceEEeCHHHCCCc
Confidence            1 12234567888888887654322210      01 136778999999999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=8.3e-18  Score=124.28  Aligned_cols=105  Identities=16%  Similarity=0.183  Sum_probs=71.9

Q ss_pred             eEEEEEEecCCceEEEEeccCcEEEEEEe-eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-c-eeeeceeeeeee
Q psy7748          53 ASHCMIFAYNDDKIFATYTARANVLMQMR-FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-Y-KVKDSDLVCIHY  129 (232)
Q Consensus        53 a~~~vi~~~~~~~v~~~~~~~~~vLl~~R-~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~-~~~~~~~~~~~~  129 (232)
                      ++.+++++.++           .+|+++| ..+.|.+|||++++|||+++||+||++||||+.+. . ........ .  
T Consensus         2 ~~~~~i~~~~~-----------~vLL~~r~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~-~--   67 (120)
T cd04680           2 GARAVVTDADG-----------RVLLVRHTYGPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGVYYH-S--   67 (120)
T ss_pred             ceEEEEECCCC-----------eEEEEEECCCCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEEEec-C--
Confidence            46667776653           4555555 44699999999999999999999999999999986 3 22222211 1  


Q ss_pred             cCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         130 SQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      ........++|.+..........          +.|..++.|+|++++++++
T Consensus        68 ~~~~~~~~~~f~~~~~~~~~~~~----------~~E~~~~~w~~~~~l~~~~  109 (120)
T cd04680          68 ASGSWDHVIVFRARADTQPVIRP----------SHEISEARFFPPDALPEPT  109 (120)
T ss_pred             CCCCceEEEEEEecccCCCccCC----------cccEEEEEEECHHHCcccC
Confidence            11223456677776654332111          2588899999999999865

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=1.6e-17  Score=124.44  Aligned_cols=112  Identities=16%  Similarity=0.219  Sum_probs=74.7

Q ss_pred             cceEEEEEEecCCceEEEEeccCcEEEEEEee---CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeece-ee
Q psy7748          51 YHASHCMIFAYNDDKIFATYTARANVLMQMRF---DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSD-LV  125 (232)
Q Consensus        51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~-~~  125 (232)
                      |.+|++++++.+            ++|+.+|.   .+.|.+|||+++.|||+++||.||++||||+.+. ..+.... +.
T Consensus         1 r~~a~~iv~~~~------------~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~   68 (128)
T cd04687           1 RNSAKAVIIKND------------KILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYI   68 (128)
T ss_pred             CcEEEEEEEECC------------EEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEEe
Confidence            346667766632            46666663   3589999999999999999999999999999987 3322221 11


Q ss_pred             ee----eecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         126 CI----HYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       126 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      ..    ......+.+.++|.+....+......     .. .+.+..++.|+|+++++++
T Consensus        69 ~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~-----~~-~~~~~~~~~W~~~~~l~~~  121 (128)
T cd04687          69 GHNPTSELPGHFHQVELMFECKIKSGTPAKTP-----SK-PDPNQIGVEWLKLKELGDI  121 (128)
T ss_pred             ccCccccCCCceeEEEEEEEEEECCCCccccc-----CC-CCCCEEeeEEEcHHHhCcc
Confidence            11    11123477888888887654331111     11 1235679999999999876

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=1.5e-17  Score=124.30  Aligned_cols=103  Identities=20%  Similarity=0.267  Sum_probs=71.0

Q ss_pred             EEEEEEeeC-CeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeecee-eeeeecCCcEEEEEEEEEEeecCcccc
Q psy7748          75 NVLMQMRFD-GYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDL-VCIHYSQSKKIILHFYALQVEKTDVLE  151 (232)
Q Consensus        75 ~vLl~~R~~-g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (232)
                      ++|+++|.. +.|.+|||+++.||++.+||.||++||||+.+. ...+.... .+.......+...++|.+....+....
T Consensus        13 ~vLl~~~~~~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~   92 (126)
T cd04688          13 KLLVQKNPDETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHEIEFYYLVTLLDESLYQ   92 (126)
T ss_pred             EEEEEEeCCCCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcccEEEEEEEEEEeCCCcccc
Confidence            566777754 799999999999999999999999999999987 43333221 122222234677888988876544322


Q ss_pred             cccccccccCCCccceeeEeeeCcccccc
Q psy7748         152 IEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       152 ~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      ..   ......+.|..++.|+|++++..+
T Consensus        93 ~~---~~~~~~~~e~~~~~W~~~~~l~~~  118 (126)
T cd04688          93 QD---IEILEEEGEKIVFRWIPIDELKEI  118 (126)
T ss_pred             cc---cceeccCCCEEEEEEeeHHHcccC
Confidence            11   011112358999999999999865

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PLN02325 nudix hydrolase

Probab=99.75  E-value=1.5e-17  Score=127.26  Aligned_cols=114  Identities=18%  Similarity=0.171  Sum_probs=76.6

Q ss_pred             CccceEEEEEEecCCceEEEEeccCcEEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeece
Q psy7748          49 SGYHASHCMIFAYNDDKIFATYTARANVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSD  123 (232)
Q Consensus        49 ~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~  123 (232)
                      ..+.++++++++.+            +||+++|.    .|.|.+|||+++.|||+.+||+||++||||+++. ..++...
T Consensus         7 ~p~~~v~~vi~~~~------------~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~~   74 (144)
T PLN02325          7 IPRVAVVVFLLKGN------------SVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTVT   74 (144)
T ss_pred             CCeEEEEEEEEcCC------------EEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEe
Confidence            34556666766642            56777774    3799999999999999999999999999999988 5444332


Q ss_pred             ee-eeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         124 LV-CIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       124 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      .. +.......+.+.++|.+...........      . +..+..++.|++++++++.+
T Consensus        75 ~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~------~-e~~e~~~~~W~~~d~Lp~~~  126 (144)
T PLN02325         75 NNVFLEEPKPSHYVTVFMRAVLADPSQVPQN------L-EPEKCYGWDWYEWDNLPEPL  126 (144)
T ss_pred             cceeecCCCCcEEEEEEEEEEECCCCCCCCc------C-CchhcCceEEEChHHCChhh
Confidence            21 1111223466777787776433211111      1 12356789999999999753

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=1.1e-17  Score=123.92  Aligned_cols=95  Identities=26%  Similarity=0.270  Sum_probs=65.6

Q ss_pred             EEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeee---cCCcEEEEEEEEEEeec
Q psy7748          75 NVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHY---SQSKKIILHFYALQVEK  146 (232)
Q Consensus        75 ~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  146 (232)
                      .+|+++|.    ++.|.+|||++++|||+++||.||++||||+++. ...+.........   ....+...++|.+....
T Consensus        12 ~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (122)
T cd04673          12 RVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAGRVEFHYVLIDFLCRYLG   91 (122)
T ss_pred             EEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEEEEEEeeccCCCccceEEEEEEEEEEeCC
Confidence            45666663    4789999999999999999999999999999976 4333322221111   11235566667776544


Q ss_pred             CcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         147 TDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      .....           ..|..++.|++++++.++
T Consensus        92 ~~~~~-----------~~E~~~~~w~~~~el~~~  114 (122)
T cd04673          92 GEPVA-----------GDDALDARWVPLDELAAL  114 (122)
T ss_pred             CcccC-----------CcccceeEEECHHHHhhC
Confidence            33211           247889999999999886

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=2.5e-18  Score=131.51  Aligned_cols=118  Identities=25%  Similarity=0.351  Sum_probs=78.4

Q ss_pred             cceEEEEEEecCCceEEEEeccCcEEEEEEe------eCCeeec-ceeecCCCCCHHHHHhHHHHHhhCCCCc---ceee
Q psy7748          51 YHASHCMIFAYNDDKIFATYTARANVLMQMR------FDGYIGF-PGGLVDAGESPLEALNRELNEEINLNPK---YKVK  120 (232)
Q Consensus        51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R------~~g~w~l-PgG~ve~gEs~~~aa~REl~EEtGl~~~---~~~~  120 (232)
                      ++++.+++++.+++        .+.+|+++|      ++|.|++ |||++++|||+++||+||++||||+.+.   +..+
T Consensus         2 h~~v~~~v~~~~~~--------~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~   73 (144)
T cd04692           2 HRTFHCWIITKDEG--------KGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPL   73 (144)
T ss_pred             ceEEEEEEEEccCC--------CCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEe
Confidence            56788888886532        257889888      3579999 5999999999999999999999999874   2222


Q ss_pred             eceeeeee-ecC-CcEEEEEEEEEEeec--CcccccccccccccCCCccceeeEeeeCcccccccCCchH
Q psy7748         121 DSDLVCIH-YSQ-SKKIILHFYALQVEK--TDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGLPC  186 (232)
Q Consensus       121 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~~~~  186 (232)
                      ........ ... ......++|.+....  +.+...          +.|+.++.|+|++++.+++...|.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~----------~~E~~~~~W~~~~el~~~~~~~~~  133 (144)
T cd04692          74 GTFKIEYDHIGKLIDREFHHVYLYELKVPLEEFTLQ----------KEEVAGVVLIPLDEFAELLEEEDH  133 (144)
T ss_pred             eEEEEeccccCCCccceEEEEEEEeccCChhhcCCC----------hhHhheEEEECHHHHHHHHHcCCC
Confidence            22211111 111 123345666666543  111111          258899999999999988755543

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.75  E-value=1.3e-17  Score=125.32  Aligned_cols=111  Identities=24%  Similarity=0.308  Sum_probs=73.2

Q ss_pred             ccceEEEEEEecCCceEEEEeccCcEEEEEEeeC-CeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceee--
Q psy7748          50 GYHASHCMIFAYNDDKIFATYTARANVLMQMRFD-GYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLV--  125 (232)
Q Consensus        50 ~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~-g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~--  125 (232)
                      ...++++++++.+           +.+|+++|.. +.|.||||++++|||+.+||.||++||||+.+. .........  
T Consensus         6 ~~~~~~~~v~~~~-----------~~vLL~~r~~~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~   74 (132)
T cd04677           6 ILVGAGVILLNEQ-----------GEVLLQKRSDTGDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVYSGKE   74 (132)
T ss_pred             cccceEEEEEeCC-----------CCEEEEEecCCCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEecCCc
Confidence            3456677777765           3467777754 699999999999999999999999999999987 433322111  


Q ss_pred             -eee-ecCC-cEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         126 -CIH-YSQS-KKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       126 -~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                       +.. ..+. ...+.++|.+..........          ..|..++.|+|++++++++
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~e~~~~~W~~~~e~~~~~  123 (132)
T cd04677          75 FYVKPNGDDEQYIVTLYYVTKVFGGKLVPD----------GDETLELKFFSLDELPELI  123 (132)
T ss_pred             eeecCCCCcEEEEEEEEEEEeccCCcccCC----------CCceeeEEEEChhHCccch
Confidence             110 1111 23444555554432221111          2478899999999998875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily

Probab=99.75  E-value=8.2e-18  Score=126.16  Aligned_cols=113  Identities=17%  Similarity=0.163  Sum_probs=77.5

Q ss_pred             cceEEEEEEecCCceEEEEeccCcEEEEEEeeCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeece-eeeee
Q psy7748          51 YHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSD-LVCIH  128 (232)
Q Consensus        51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~-~~~~~  128 (232)
                      ..+|+++++..+.+        +..+|+.+|.++.|.+|||++++|||+.+||.||++||||+.+. ....... .....
T Consensus         2 ~~~~g~vi~~~~~~--------~~~vLl~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~   73 (130)
T cd03428           2 ERSAGAIIYRRLNN--------EIEYLLLQASYGHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNY   73 (130)
T ss_pred             ceEEEEEEEEecCC--------CceEEEEEccCCcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhhccceeEEEc
Confidence            35788888886642        23567777655999999999999999999999999999999987 4332111 11111


Q ss_pred             ecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         129 YSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      .........++|.+.+........          +.|..++.|++++++.+++
T Consensus        74 ~~~~~~~~~~~f~~~~~~~~~~~~----------~~E~~~~~W~~~~e~~~~~  116 (130)
T cd03428          74 QVRGKLKTVTYFLAELRPDVEVKL----------SEEHQDYRWLPYEEALKLL  116 (130)
T ss_pred             cccCcceEEEEEEEEeCCCCcccc----------ccceeeEEeecHHHHHHHc
Confidence            112235566777777652211111          1378899999999998875

Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=1.8e-17  Score=123.42  Aligned_cols=107  Identities=23%  Similarity=0.270  Sum_probs=73.4

Q ss_pred             ceEEEEEEecCCceEEEEeccCcEEEEEEe-eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeee
Q psy7748          52 HASHCMIFAYNDDKIFATYTARANVLMQMR-FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHY  129 (232)
Q Consensus        52 ~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R-~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~  129 (232)
                      ..+++++++.+            ++|+.+| ..|.|.+|||++++|||+.+||+||++||||+.+. ..+..........
T Consensus         3 ~~v~~~i~~~~------------~vLL~~~~~~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~   70 (123)
T cd04672           3 VDVRAAIFKDG------------KILLVREKSDGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDRNKHH   70 (123)
T ss_pred             ceEEEEEEECC------------EEEEEEEcCCCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEecccccc
Confidence            35666666642            3444444 57899999999999999999999999999999886 3333332221111


Q ss_pred             c--CCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         130 S--QSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       130 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      .  ...+.+.++|.+......+...           .|..++.|+++++++++.
T Consensus        71 ~~~~~~~~~~~~f~~~~~~~~~~~~-----------~E~~~~~W~~~~el~~l~  113 (123)
T cd04672          71 PPPQPYQVYKLFFLCEILGGEFKPN-----------IETSEVGFFALDDLPPLS  113 (123)
T ss_pred             CCCCceEEEEEEEEEEecCCcccCC-----------CceeeeEEECHHHCcccc
Confidence            1  2235666788887754332211           378899999999998874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK15472 nucleoside triphosphatase NudI; Provisional

Probab=99.74  E-value=1.5e-17  Score=126.74  Aligned_cols=96  Identities=22%  Similarity=0.187  Sum_probs=60.4

Q ss_pred             cEEEEEEe------eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceee-----eeeecCCc-EEEE--E
Q psy7748          74 ANVLMQMR------FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLV-----CIHYSQSK-KIIL--H  138 (232)
Q Consensus        74 ~~vLl~~R------~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~-----~~~~~~~~-~~~~--~  138 (232)
                      +++|+++|      ++|.|++|||++++|||+++||+||++||||+.+. ..+....+.     .....+.. ....  +
T Consensus        15 ~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (141)
T PRK15472         15 GAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTYADGRKEEIYMIYL   94 (141)
T ss_pred             CEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeeeccccccccceeEEecCCCceeEEEEEE
Confidence            35677776      24899999999999999999999999999999875 222111110     01111111 1222  2


Q ss_pred             EEEEEeecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         139 FYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      +|.+.........           +.|..++.|+++++++++
T Consensus        95 ~~~~~~~~~~~~~-----------~~E~~~~~w~~~~el~~l  125 (141)
T PRK15472         95 IFDCVSANRDVKI-----------NEEFQDYAWVKPEDLVHY  125 (141)
T ss_pred             EEEeecCCCcccC-----------ChhhheEEEccHHHhccc
Confidence            2333332222111           247889999999999986

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=3.4e-17  Score=122.03  Aligned_cols=103  Identities=17%  Similarity=0.185  Sum_probs=72.0

Q ss_pred             eEEEEEEecCCceEEEEeccCcEEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeee
Q psy7748          53 ASHCMIFAYNDDKIFATYTARANVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCI  127 (232)
Q Consensus        53 a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~  127 (232)
                      .+++++++.+           +.+|+.+|.    ++.|.+|||+++.||++++||+||++||||+++. ...+.....  
T Consensus         2 ~~~~vv~~~~-----------~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~--   68 (123)
T cd04671           2 IVAAVILNNQ-----------GEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVEEQ--   68 (123)
T ss_pred             EEEEEEEcCC-----------CEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEEEcc--
Confidence            3556666654           356676663    4799999999999999999999999999999987 443332211  


Q ss_pred             eecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccc
Q psy7748         128 HYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGD  179 (232)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~  179 (232)
                          ..+...++|.+....+.+...       .+.+.|+.++.|+|+++++-
T Consensus        69 ----~~~~~~~~f~a~~~~g~~~~~-------~~~~~e~~~~~W~~~~el~~  109 (123)
T cd04671          69 ----GGSWFRFVFTGNITGGDLKTE-------KEADSESLQARWYSNKDLPL  109 (123)
T ss_pred             ----CCeEEEEEEEEEEeCCeEccC-------CCCCcceEEEEEECHHHCCC
Confidence                124566777787665443321       11234788999999999953

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.74  E-value=1.6e-17  Score=125.13  Aligned_cols=99  Identities=18%  Similarity=0.142  Sum_probs=66.9

Q ss_pred             cCcEEEEEEee---CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeece-eeeeeecCCcEEEEEEEEEEeec
Q psy7748          72 ARANVLMQMRF---DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSD-LVCIHYSQSKKIILHFYALQVEK  146 (232)
Q Consensus        72 ~~~~vLl~~R~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  146 (232)
                      .++.+|+.+|.   +|.|.+|||++++|||+.+||.||++||||+++. ....... ..+. .........++|.+....
T Consensus        12 ~~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~-~~~~~~~~~~~f~~~~~~   90 (131)
T cd04695          12 KETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNADYLEQFYE-ANDNRILMAPVFVGFVPP   90 (131)
T ss_pred             CCCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccccceeeEee-cCCceEEEEEEEEEEecC
Confidence            34567777773   6899999999999999999999999999999986 3221111 1111 112223445556655543


Q ss_pred             CcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         147 TDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      ......          +.|..++.|+|++++.++.
T Consensus        91 ~~~~~~----------~~E~~~~~W~~~~e~~~~~  115 (131)
T cd04695          91 HQEVVL----------NHEHTEYRWCSFAEALELA  115 (131)
T ss_pred             CCcccc----------CchhcccEecCHHHHHHhc
Confidence            322111          1478899999999999875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex

Probab=99.74  E-value=1.4e-17  Score=127.49  Aligned_cols=112  Identities=14%  Similarity=0.135  Sum_probs=70.6

Q ss_pred             ceEEEEEEecCCceEEEEeccCcEEEEEEe-eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeee
Q psy7748          52 HASHCMIFAYNDDKIFATYTARANVLMQMR-FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHY  129 (232)
Q Consensus        52 ~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R-~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~  129 (232)
                      +.+++++++.+++          .+|+.+| .++.|+||||++++|||+.+||+||++||||+.+. ... ...+.....
T Consensus         2 p~~gaii~~~~~~----------~vLLvr~~~~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~-~~~~~~~~~   70 (145)
T cd03672           2 PVYGAIILNEDLD----------KVLLVKGWKSKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYID-KDDYIELII   70 (145)
T ss_pred             CeeEEEEEeCCCC----------EEEEEEecCCCCEECCCccCCCCcCHHHHHHHHHHHhhCccceeccc-cceeeeccc
Confidence            3567777776422          4566665 44699999999999999999999999999999987 321 122222111


Q ss_pred             cCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccccCCc
Q psy7748         130 SQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGL  184 (232)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~~  184 (232)
                        ....+.+|+...+.....       . ....+.|..++.|+|++++++++...
T Consensus        71 --~~~~~~~f~~~~~~~~~~-------~-~~~~~~E~~~~~Wv~~~el~~~~~~~  115 (145)
T cd03672          71 --RGQNVKLYIVPGVPEDTP-------F-EPKTRKEISKIEWFDIKDLPTKKNKK  115 (145)
T ss_pred             --CCcEEEEEEEecCCCCcc-------c-CcCChhhhheEEEeeHHHhhhhhhhc
Confidence              122333333332221110       0 01112589999999999999986443

Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function

Probab=99.73  E-value=7.4e-17  Score=121.70  Aligned_cols=97  Identities=14%  Similarity=0.047  Sum_probs=66.2

Q ss_pred             EEEEEEee---CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCccc
Q psy7748          75 NVLMQMRF---DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVL  150 (232)
Q Consensus        75 ~vLl~~R~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (232)
                      .+|+.+|.   ++.|++|||++++|||+.+||.||++||||+++. ..+.... .+...........++|.+.+......
T Consensus        12 ~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~-~~~~~~~~~~~~~~~f~~~~~~~~~~   90 (134)
T cd03675          12 RFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIY-QWTAPDSDTTYLRFAFAAELLEHLPD   90 (134)
T ss_pred             EEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEEE-EeecCCCCeeEEEEEEEEEECCCCCC
Confidence            45665653   3689999999999999999999999999999987 4333321 11111112344556677766543221


Q ss_pred             ccccccccccCCCccceeeEeeeCccccccc
Q psy7748         151 EIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       151 ~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      ..         .+.|+.++.|++++++.++.
T Consensus        91 ~~---------~~~e~~~~~w~~~~el~~~~  112 (134)
T cd03675          91 QP---------LDSGIVRAHWLTLEEILALA  112 (134)
T ss_pred             CC---------CCCCceeeEEEeHHHHHhhh
Confidence            10         12478899999999999875

In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,

>PRK00714 RNA pyrophosphohydrolase; Reviewed

Probab=99.73  E-value=6.8e-17  Score=125.28  Aligned_cols=119  Identities=20%  Similarity=0.198  Sum_probs=78.6

Q ss_pred             CccceEEEEEEecCCceEEEEeccCcEEEEEEee--CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeece--
Q psy7748          49 SGYHASHCMIFAYNDDKIFATYTARANVLMQMRF--DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSD--  123 (232)
Q Consensus        49 ~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~--  123 (232)
                      .++.++++++++.++           .+|+++|.  ++.|++|||++++||++.+||.||++||||+.+. ..++...  
T Consensus         6 ~~~~~v~~~i~~~~g-----------~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~~   74 (156)
T PRK00714          6 GYRPNVGIILLNRQG-----------QVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETRD   74 (156)
T ss_pred             CCCCeEEEEEEecCC-----------EEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEcCC
Confidence            367788899998773           46666663  4799999999999999999999999999999986 4433322  


Q ss_pred             -eeeeee-------c-CCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccccCC
Q psy7748         124 -LVCIHY-------S-QSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRG  183 (232)
Q Consensus       124 -~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~  183 (232)
                       +.+...       . .......++|.+.........    ..... ++.|..++.|++++++++++..
T Consensus        75 ~~~y~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~----~l~~~-~~~E~~~~~W~~~del~~~~~~  138 (156)
T PRK00714         75 WLRYDLPKRLVRRSKGVYRGQKQKWFLLRLTGDDSEI----NLNTT-SHPEFDAWRWVSYWYPLDQVVP  138 (156)
T ss_pred             eEEecCcHHHhhccCCcccCcEEEEEEEEecCCCccc----cCCCC-CCCCeeeeEeCCHHHHHHhchh
Confidence             111110       0 011124567777664322110    00111 2248999999999999988633

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway

Probab=99.73  E-value=2.2e-17  Score=129.26  Aligned_cols=120  Identities=19%  Similarity=0.150  Sum_probs=80.3

Q ss_pred             CCc-cceEEEEEEecCCceEEEEeccCcEEEEEEe------eCCeeecc-eeecCCCCCHHHHHhHHHHHhhCCCCc-ce
Q psy7748          48 KSG-YHASHCMIFAYNDDKIFATYTARANVLMQMR------FDGYIGFP-GGLVDAGESPLEALNRELNEEINLNPK-YK  118 (232)
Q Consensus        48 ~~~-~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R------~~g~w~lP-gG~ve~gEs~~~aa~REl~EEtGl~~~-~~  118 (232)
                      ... +.+++++++++++           .+|+++|      ++|.|.+| ||++++||++++||+||++||||+.+. ..
T Consensus        26 ~~~~~~~v~v~i~~~~~-----------~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~   94 (165)
T cd02885          26 GTLLHRAFSVFLFNSKG-----------RLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLE   94 (165)
T ss_pred             CCcceeEEEEEEEcCCC-----------cEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchh
Confidence            344 6777777887663           4667777      45889986 899999999999999999999999987 43


Q ss_pred             ee--eceeeeeeecC-CcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccccCCchHHHH
Q psy7748         119 VK--DSDLVCIHYSQ-SKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGLPCFLT  189 (232)
Q Consensus       119 ~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~~~~~l~  189 (232)
                      +.  ...+....... ..+.+.++|.+...... ..          ...|+.++.|+|++++.+++...+..+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~-~~----------~~~Ev~~~~w~~~~el~~~~~~~~~~~~  157 (165)
T cd02885          95 LVLPRFRYRAPDDGGLVEHEIDHVFFARADVTL-IP----------NPDEVSEYRWVSLEDLKELVAAAPEAFT  157 (165)
T ss_pred             hccceEEEEEEcCCCceeeEEEEEEEEEeCCCC-CC----------CccceeEEEEECHHHHHHHHHhCchhcC
Confidence            32  22222111111 12345567776654221 11          1248889999999999998755544433

Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.73  E-value=2.5e-17  Score=123.24  Aligned_cols=104  Identities=19%  Similarity=0.217  Sum_probs=73.3

Q ss_pred             eEEEEEEecCCceEEEEeccCcEEEEEEee------CCeeec-ceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeecee
Q psy7748          53 ASHCMIFAYNDDKIFATYTARANVLMQMRF------DGYIGF-PGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDL  124 (232)
Q Consensus        53 a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~------~g~w~l-PgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~  124 (232)
                      ++.+++++.+           +++|+++|.      +|.|++ |||++++||++++||+||++||||+.+. +.......
T Consensus         2 ~~~v~i~~~~-----------~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~~~   70 (126)
T cd04697           2 ATYIFVFNSE-----------GKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGLFY   70 (126)
T ss_pred             eEEEEEEcCC-----------CeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEeeEEE
Confidence            6777888766           456788883      578999 6999999999999999999999999987 43332222


Q ss_pred             eeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         125 VCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      .   .........++|.+... ......          ..|..++.|++++++.+++
T Consensus        71 ~---~~~~~~~~~~~f~~~~~-~~~~~~----------~~E~~~~~w~~~~el~~~~  113 (126)
T cd04697          71 Y---DTDGNRVWGKVFSCVYD-GPLKLQ----------EEEVEEITWLSINEILQFK  113 (126)
T ss_pred             e---cCCCceEEEEEEEEEEC-CCCCCC----------HhHhhheEEcCHHHHHHHh
Confidence            1   11223444566666543 222221          1478899999999999876

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily

Probab=99.72  E-value=8.6e-17  Score=121.71  Aligned_cols=94  Identities=22%  Similarity=0.130  Sum_probs=66.1

Q ss_pred             EEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcc
Q psy7748          75 NVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDV  149 (232)
Q Consensus        75 ~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (232)
                      ++|+++|.    +|.|.+|||+++.||++.+||+||++||||+.+. ........ ........+...++|.+....+..
T Consensus        13 ~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~-~~~~~~~~~~~~~~f~~~~~~~~~   91 (137)
T cd03427          13 KVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIK-FPFPGEEERYGVFVFLATEFEGEP   91 (137)
T ss_pred             EEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEEEE-EEcCCCCcEEEEEEEEECCccccc
Confidence            56676663    5799999999999999999999999999999987 54443322 111111245667777776544332


Q ss_pred             cccccccccccCCCccceeeEeeeCcccccc
Q psy7748         150 LEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       150 ~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      ..           ..|..++.|+|+++++..
T Consensus        92 ~~-----------~~e~~~~~W~~~~el~~~  111 (137)
T cd03427          92 LK-----------ESEEGILDWFDIDDLPLL  111 (137)
T ss_pred             CC-----------CCccccceEEcHhhcccc
Confidence            21           135568999999999875

MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=2.7e-17  Score=122.26  Aligned_cols=97  Identities=24%  Similarity=0.283  Sum_probs=67.2

Q ss_pred             cEEEEEEee-------CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-cee-eeceeeeeeecCCcEEEEEEEEEEe
Q psy7748          74 ANVLMQMRF-------DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKV-KDSDLVCIHYSQSKKIILHFYALQV  144 (232)
Q Consensus        74 ~~vLl~~R~-------~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  144 (232)
                      +++|+++|.       +|.|.||||+++.||++++||.||++||||+.+. ..+ ....+...    ......++|.+..
T Consensus        12 g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~----~~~~~~~~f~~~~   87 (122)
T cd04682          12 GRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPSA----SPPGTEHVFVVPL   87 (122)
T ss_pred             CEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccccceeEecccC----CCCceEEEEEEEE
Confidence            356777772       4799999999999999999999999999999985 221 11112211    2245667777766


Q ss_pred             ecCc-ccccccccccccCCCccceeeEeeeCcccccccCCc
Q psy7748         145 EKTD-VLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGL  184 (232)
Q Consensus       145 ~~~~-~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~~  184 (232)
                      .... ....          ..|..++.|+|++++.+.....
T Consensus        88 ~~~~~~~~~----------~~E~~~~~W~~~~el~~~~~~~  118 (122)
T cd04682          88 TAREDAILF----------GDEGQALRLMTVEEFLAHEDAI  118 (122)
T ss_pred             ecCCCcccc----------CchhheeecccHHHHhhccccC
Confidence            5432 1111          2588899999999998765433

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=2.5e-17  Score=123.49  Aligned_cols=110  Identities=22%  Similarity=0.270  Sum_probs=75.2

Q ss_pred             eEEEEEEecCCceEEEEeccCcEEEEEEee---CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceee---
Q psy7748          53 ASHCMIFAYNDDKIFATYTARANVLMQMRF---DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLV---  125 (232)
Q Consensus        53 a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~---  125 (232)
                      .+.+++++..         ..+.+|+++|.   +|.|.+|||+++.||++.+||.||++||||+.+. ...+.....   
T Consensus         3 ~~~v~~~~~~---------~~~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~   73 (129)
T cd04664           3 SVLVVPYRLT---------GEGRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAF   73 (129)
T ss_pred             EEEEEEEEeC---------CCCEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccc
Confidence            4566666651         12467777773   6899999999999999999999999999999985 333322211   


Q ss_pred             eeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         126 CIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      +.......+...++|.+.+........          +.|..++.|+|++++.+++
T Consensus        74 ~~~~~~~~~~~~~~f~~~~~~~~~~~~----------~~E~~~~~W~~~~e~~~~~  119 (129)
T cd04664          74 VEFTDNGRVWTEHPFAFHLPSDAVVTL----------DWEHDAFEWVPPEEAAALL  119 (129)
T ss_pred             cccCCCceEEEEeEEEEEcCCCCcccC----------CccccccEecCHHHHHHHH
Confidence            111111245667788887754431111          2478899999999998875

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=5.6e-17  Score=120.67  Aligned_cols=111  Identities=15%  Similarity=0.024  Sum_probs=74.8

Q ss_pred             eEEEEEEecCCceEEEEeccCcEEEEEEee-CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-c-eeeeceeeeeee
Q psy7748          53 ASHCMIFAYNDDKIFATYTARANVLMQMRF-DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-Y-KVKDSDLVCIHY  129 (232)
Q Consensus        53 a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~-~~~~~~~~~~~~  129 (232)
                      .|++|+++.++.        ...+|+.+|. .+.|.+|||+++.|||+.+||+||++||||+.+. . ..+.........
T Consensus         2 ~~g~v~~~~~~~--------~~~vLLv~~~~~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~~~   73 (122)
T cd04666           2 QAGAIPYRETGG--------EVEVLLVTSRRTGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKRS   73 (122)
T ss_pred             EEEEEEEEEcCC--------ceEEEEEEecCCCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeeecC
Confidence            466677765422        2355665553 4899999999999999999999999999999976 4 443332221111


Q ss_pred             -cCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         130 -SQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       130 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                       ....+...++|.+........          ....+..++.|+|++++.+++
T Consensus        74 ~~~~~~~~~~~f~~~~~~~~~~----------~~~~e~~~~~W~~~~ea~~~~  116 (122)
T cd04666          74 KNRPPRCEVAVFPLEVTEELDE----------WPEMHQRKRKWFSPEEAALLV  116 (122)
T ss_pred             CCCCceEEEEEEEEEEeccccC----------CcccCceEEEEecHHHHHHhc
Confidence             112367778888776532211          112367899999999998876

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.72  E-value=5.4e-17  Score=121.02  Aligned_cols=97  Identities=22%  Similarity=0.212  Sum_probs=65.3

Q ss_pred             EEEEEEe-eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeecee-eeeeecCCcEEEEEEEEEEeecCcccc
Q psy7748          75 NVLMQMR-FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDL-VCIHYSQSKKIILHFYALQVEKTDVLE  151 (232)
Q Consensus        75 ~vLl~~R-~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (232)
                      ++|+.+| ..+.|.+|||++++||++.+||+||++||||+++. ...+.... .........+.+.++|.+.........
T Consensus        13 ~vLlv~~~~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~   92 (125)
T cd04689          13 KVLLARVIGQPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAIENQWHEKGVRTHEINHIFAVESSWLASDG   92 (125)
T ss_pred             EEEEEEecCCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEEEEEEeeeeccCCceEEEEEEEEEEEcccccccC
Confidence            4566666 44799999999999999999999999999999987 44443322 111112233566677877765332110


Q ss_pred             cccccccccCCCccceeeEeeeCcccc
Q psy7748         152 IEKGALTSHDYGVEVLGTVRVPLYTMG  178 (232)
Q Consensus       152 ~~~~~~~~~~~~~E~~~~~wvpl~el~  178 (232)
                            .. ..+.|..++.|++++++.
T Consensus        93 ------~~-~~~~e~~~~~W~~~~el~  112 (125)
T cd04689          93 ------PP-QADEDHLSFSWVPVSDLS  112 (125)
T ss_pred             ------Cc-cCccceEEEEEccHHHcc
Confidence                  01 112468899999999965

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]

Probab=99.72  E-value=3.4e-17  Score=125.26  Aligned_cols=108  Identities=24%  Similarity=0.315  Sum_probs=72.1

Q ss_pred             ccceEEEEEEecCCceEEEEeccCcEEEEEEe----eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeecee
Q psy7748          50 GYHASHCMIFAYNDDKIFATYTARANVLMQMR----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDL  124 (232)
Q Consensus        50 ~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R----~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~  124 (232)
                      ...++++++...+            ++|+.+|    +.|+|.||||++|.|||+++||.||++||||+++. ..++..+.
T Consensus         9 p~~~v~~~i~~~~------------~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~v~~   76 (145)
T COG1051           9 PLVAVGALIVRNG------------RILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLAVFD   76 (145)
T ss_pred             cceeeeEEEEeCC------------EEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEEEEec
Confidence            3456666666644            5667777    34899999999999999999999999999999977 54444332


Q ss_pred             eeeeecCC-cEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         125 VCIHYSQS-KKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       125 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      . ...... .++...+|.+.. .+++...+         +.+...+.|+++++++..
T Consensus        77 ~-~~rd~r~~~v~~~~~~~~~-~g~~~~~~---------~~d~~~~~~~~~~~l~~~  122 (145)
T COG1051          77 D-PGRDPRGHHVSFLFFAAEP-EGELLAGD---------GDDAAEVGWFPLDELPEL  122 (145)
T ss_pred             C-CCCCCceeEEEEEEEEEec-CCCcccCC---------hhhHhhcceecHhHcccc
Confidence            2 222222 344444444433 33322221         136778999999999975

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes

Probab=99.72  E-value=2.5e-17  Score=127.89  Aligned_cols=94  Identities=31%  Similarity=0.358  Sum_probs=65.0

Q ss_pred             cEEEEEEe------eCCeeecceeecCCC-CCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEee
Q psy7748          74 ANVLMQMR------FDGYIGFPGGLVDAG-ESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVE  145 (232)
Q Consensus        74 ~~vLl~~R------~~g~w~lPgG~ve~g-Es~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (232)
                      +++|+++|      ++|.|++|||++++| |++++||+||++||||+++. ...+..........   ...+++|.+.+.
T Consensus        16 ~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~---~~~v~~~~~~~~   92 (157)
T cd03426          16 LRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYTRS---GFVVTPVVGLVP   92 (157)
T ss_pred             eEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEECCCccccC---CCEEEEEEEEEC
Confidence            46788888      258999999999999 99999999999999999987 54443322221111   233444555544


Q ss_pred             cC-cccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         146 KT-DVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       146 ~~-~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      .. .....          ..|+.++.|+|++++.+.
T Consensus        93 ~~~~~~~~----------~~E~~~~~W~~~~el~~~  118 (157)
T cd03426          93 PPLPLVLN----------PDEVAEVFEVPLSFLLDP  118 (157)
T ss_pred             CCCCCCCC----------HHHhheeEEEcHHHHhCc
Confidence            32 11111          148889999999998875

The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []

Probab=99.71  E-value=6.5e-17  Score=121.22  Aligned_cols=112  Identities=25%  Similarity=0.288  Sum_probs=77.1

Q ss_pred             cceEEEEEEecCCceEEEEeccCcEEEEEEee------CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeece
Q psy7748          51 YHASHCMIFAYNDDKIFATYTARANVLMQMRF------DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSD  123 (232)
Q Consensus        51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~------~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~  123 (232)
                      +.++++++++.++           ++|+.+|.      ++.|.+|||++++|||+.+||+||++||||+.+. .......
T Consensus         2 ~~~v~~ii~~~~~-----------~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~~~   70 (134)
T PF00293_consen    2 RRAVGVIIFNEDG-----------KVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLGLF   70 (134)
T ss_dssp             EEEEEEEEEETTT-----------EEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEEEE
T ss_pred             CCEEEEEEEeCCc-----------EEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccccceee
Confidence            6788999999873           56677773      2689999999999999999999999999999986 3333222


Q ss_pred             eeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         124 LVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      ..............++|.+.+.........        ...|..++.|+|++++.++.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~e~~~~~W~~~~el~~~~  120 (134)
T PF00293_consen   71 SYPSPSGDPEGEIVIFFIAELPSEQSEIQP--------QDEEISEVKWVPPDELLELL  120 (134)
T ss_dssp             EEEETTTESSEEEEEEEEEEEEEEESECHT--------TTTTEEEEEEEEHHHHHHHH
T ss_pred             eecccCCCcccEEEEEEEEEEeCCccccCC--------CCccEEEEEEEEHHHhhhch
Confidence            222221111235566666665543311111        11389999999999999875

The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=3.7e-17  Score=122.31  Aligned_cols=107  Identities=22%  Similarity=0.239  Sum_probs=67.8

Q ss_pred             eEEEEEEecCCceEEEEeccCcEEEEEEee------CCeeecc-eeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeecee
Q psy7748          53 ASHCMIFAYNDDKIFATYTARANVLMQMRF------DGYIGFP-GGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDL  124 (232)
Q Consensus        53 a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~------~g~w~lP-gG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~  124 (232)
                      ++.+++++.+           ++||+++|.      +|.|++| ||++++||++ +||+||++||||+.+. ..+... .
T Consensus         2 ~v~v~~~~~~-----------g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~-~   68 (127)
T cd04693           2 VVHVCIFNSK-----------GELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPL-F   68 (127)
T ss_pred             eEEEEEEeCC-----------CeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEE-E
Confidence            4555666654           457788773      4799998 8999999999 9999999999999976 222111 1


Q ss_pred             eeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccccCC
Q psy7748         125 VCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRG  183 (232)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~  183 (232)
                      .+..... .+...++|.+..........          .+|+.++.|++++++.+++..
T Consensus        69 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~----------~~E~~~~~w~~~~el~~~~~~  116 (127)
T cd04693          69 RYFFEAE-GFDDYYLFYADVEIGKLILQ----------KEEVDEVKFVSKDEIDGLIGH  116 (127)
T ss_pred             EEEeecC-CeEEEEEEEecCcccccccC----------HHHhhhEEEeCHHHHHHHHhc
Confidence            1111111 12222334333322222221          247889999999999988643

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate

Probab=99.71  E-value=4.5e-17  Score=123.34  Aligned_cols=109  Identities=21%  Similarity=0.171  Sum_probs=73.3

Q ss_pred             cceEEEEEEecCCceEEEEeccCcEEEEEEe-----eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeecee
Q psy7748          51 YHASHCMIFAYNDDKIFATYTARANVLMQMR-----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDL  124 (232)
Q Consensus        51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R-----~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~  124 (232)
                      +.+++++++++++           .+|+.+|     .++.|++|||+++.||++.+||.||++||||+.+. +..+...+
T Consensus         2 ~~~v~v~~~~~~~-----------~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~   70 (137)
T cd03424           2 PDAVAVLPYDDDG-----------KVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGSFY   70 (137)
T ss_pred             CCEEEEEEEcCCC-----------eEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEeeEe
Confidence            4677888888763           3444333     23589999999999999999999999999999996 44333332


Q ss_pred             eeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         125 VCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      ....   ......++|.+........      . .. .+.|+.++.|++++++.+++
T Consensus        71 ~~~~---~~~~~~~~~~~~~~~~~~~------~-~~-~~~E~~~~~w~~~~el~~~~  116 (137)
T cd03424          71 PSPG---FSDERIHLFLAEDLSPGEE------G-LL-DEGEDIEVVLVPLDEALELL  116 (137)
T ss_pred             cCCc---ccCccEEEEEEEccccccc------C-CC-CCCCeeEEEEecHHHHHHHH
Confidence            2211   1233455666665443210      0 01 12479999999999999875

Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=7e-17  Score=120.75  Aligned_cols=108  Identities=18%  Similarity=0.195  Sum_probs=69.9

Q ss_pred             cceEEEEEEecCCceEEEEeccCcEEEEEEe-e--CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeee
Q psy7748          51 YHASHCMIFAYNDDKIFATYTARANVLMQMR-F--DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVC  126 (232)
Q Consensus        51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R-~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~  126 (232)
                      ..+|++++++.++           ++|+.+| .  +|.|.+|||+++.|||+++||.||++||||+.+. .......+..
T Consensus         2 ~~~~~~~v~~~~~-----------~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~   70 (127)
T cd04670           2 TVGVGGLVLNEKN-----------EVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFRHAH   70 (127)
T ss_pred             eeEEEEEEEcCCC-----------eEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEEEEEEecC
Confidence            4577888888663           3455444 4  6899999999999999999999999999999987 4333222111


Q ss_pred             eeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         127 IHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      ..   ......++|.+.+......      . ..+ ..|..++.|++++++.+.
T Consensus        71 ~~---~~~~~~~~~~~~~~~~~~~------~-~~~-~~E~~~~~w~~~~el~~~  113 (127)
T cd04670          71 PG---AFGKSDLYFICRLKPLSFD------I-NFD-TSEIAAAKWMPLEEYISQ  113 (127)
T ss_pred             CC---CcCceeEEEEEEEccCcCc------C-CCC-hhhhheeEEEcHHHHhcc
Confidence            11   1122334455554321110      0 011 247889999999999764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=1.2e-16  Score=120.02  Aligned_cols=103  Identities=18%  Similarity=0.167  Sum_probs=72.5

Q ss_pred             CccceEEEEEEecCCceEEEEeccCcEEEEEEe----eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeece
Q psy7748          49 SGYHASHCMIFAYNDDKIFATYTARANVLMQMR----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSD  123 (232)
Q Consensus        49 ~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R----~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~  123 (232)
                      ..+.++++++++.+            .+|+.+|    .+|.|++|||+++.||++++||+||++||||+++. ..++.. 
T Consensus        11 ~~~~~v~~ii~~~~------------~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~~~~-   77 (130)
T cd04511          11 NPKIIVGCVPEWEG------------KVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAV-   77 (130)
T ss_pred             CCcEEEEEEEecCC------------EEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeEEEE-
Confidence            34455666665532            4666666    45799999999999999999999999999999976 333222 


Q ss_pred             eeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccc
Q psy7748         124 LVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGD  179 (232)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~  179 (232)
                      +.    ....+...++|.+.........           +.|..++.|+++++++.
T Consensus        78 ~~----~~~~~~~~~~f~~~~~~~~~~~-----------~~e~~~~~~~~~~~l~~  118 (130)
T cd04511          78 YS----VPHISQVYMFYRARLLDLDFAP-----------GPESLEVRLFTEEEIPW  118 (130)
T ss_pred             Ee----cCCceEEEEEEEEEEcCCcccC-----------CcchhceEEECHHHCCc
Confidence            11    1233557788888776543221           24678899999999973

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.71  E-value=7.7e-17  Score=117.99  Aligned_cols=91  Identities=24%  Similarity=0.282  Sum_probs=66.1

Q ss_pred             cEEEEEEeeCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCccccc
Q psy7748          74 ANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEI  152 (232)
Q Consensus        74 ~~vLl~~R~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (232)
                      +.+|+++|..|.|++|||++++||++.+||.||++||||+.+. ...+...     ..  .....++|.+.+....... 
T Consensus        11 ~~vLlv~r~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~-----~~--~~~~~~~f~~~~~~~~~~~-   82 (112)
T cd04667          11 GRVLLVRKSGSRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLFHV-----DG--GSTRHHVFVASVPPSAQPK-   82 (112)
T ss_pred             CEEEEEEcCCCcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEEEEE-----eC--CCEEEEEEEEEcCCcCCCC-
Confidence            3678888888999999999999999999999999999999976 4322211     11  1334466777654332111 


Q ss_pred             ccccccccCCCccceeeEeeeCccccccc
Q psy7748         153 EKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       153 ~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                               ...|..++.|+|++++.++.
T Consensus        83 ---------~~~e~~~~~W~~~~el~~~~  102 (112)
T cd04667          83 ---------PSNEIADCRWLSLDALGDLN  102 (112)
T ss_pred             ---------CchheeEEEEecHHHhhhcc
Confidence                     12478899999999998864

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=1.9e-16  Score=118.03  Aligned_cols=110  Identities=19%  Similarity=0.196  Sum_probs=73.8

Q ss_pred             cceEEEEEEecCCceEEEEeccCcEEEEEEee-CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeec----ee
Q psy7748          51 YHASHCMIFAYNDDKIFATYTARANVLMQMRF-DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDS----DL  124 (232)
Q Consensus        51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~----~~  124 (232)
                      +.++++++++.+           +.+|+++|. .|.|.+|||+++.||++++||.||++||||+++. ..++..    .+
T Consensus         2 ~~~v~~ii~~~~-----------~~vLl~~r~~~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~   70 (129)
T cd04676           2 LPGVTAVVRDDE-----------GRVLLIRRSDNGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVH   70 (129)
T ss_pred             cceEEEEEECCC-----------CeEEEEEecCCCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeecccc
Confidence            346666766654           356777774 4899999999999999999999999999999876 433211    11


Q ss_pred             eeeeecCC-cEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         125 VCIHYSQS-KKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       125 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      .+...... .+...++|.+....+.....          ..|..++.|++++++.++.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~e~~~~~w~~~~el~~~~  118 (129)
T cd04676          71 VVTYPNGDVRQYLDITFRCRVVGGELRVG----------DDESLDVAWFDPDGLPPLL  118 (129)
T ss_pred             eeecCCCCcEEEEEEEEEEEeeCCeecCC----------CCceeEEEEEChhhCcccc
Confidence            11111111 25566667666554332111          2477899999999999863

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.70  E-value=1.6e-16  Score=117.16  Aligned_cols=94  Identities=23%  Similarity=0.304  Sum_probs=63.7

Q ss_pred             EEEEEEe-eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc---ceeeeceeeeeeecCCcEEEEEEEEEEeecCccc
Q psy7748          75 NVLMQMR-FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK---YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVL  150 (232)
Q Consensus        75 ~vLl~~R-~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (232)
                      ++|+.+| ..+.|.+|||++++||++++||.||++||||+.+.   ...+.............+...++|.+.... ...
T Consensus        13 ~vLl~~r~~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~-~~~   91 (118)
T cd04690          13 RVLLVRKRGTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDVRATVYVAELTG-EPV   91 (118)
T ss_pred             eEEEEEECCCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCcEEEEEEEEEcccC-CcC
Confidence            4555454 56899999999999999999999999999999875   222222221111111235677778776643 111


Q ss_pred             ccccccccccCCCccceeeEeeeCcccccc
Q psy7748         151 EIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       151 ~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      .           +.|..++.|+|++++.+.
T Consensus        92 ~-----------~~e~~~~~W~~~~e~~~~  110 (118)
T cd04690          92 P-----------AAEIEEIRWVDYDDPADD  110 (118)
T ss_pred             C-----------CchhhccEEecHHHcccc
Confidence            1           147889999999997554

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP

Probab=99.70  E-value=4.8e-17  Score=122.52  Aligned_cols=92  Identities=17%  Similarity=0.221  Sum_probs=65.3

Q ss_pred             cEEEEEEee---CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcc
Q psy7748          74 ANVLMQMRF---DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDV  149 (232)
Q Consensus        74 ~~vLl~~R~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (232)
                      +++|+++|.   +|.|.+|||+++.||++++||.||++||||+.+. ...+....   ..  ..+.+.++|.+....+..
T Consensus        12 ~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~~~---~~--~~~~~~~~f~~~~~~~~~   86 (131)
T cd03429          12 DRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGSQP---WP--FPSSLMLGFTAEADSGEI   86 (131)
T ss_pred             CEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEeecC---CC--CCceEEEEEEEEEcCCcc
Confidence            356666663   4799999999999999999999999999999987 44332211   11  113445667776654332


Q ss_pred             cccccccccccCCCccceeeEeeeCcccccc
Q psy7748         150 LEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       150 ~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      ...          +.|+.++.|+|++++.++
T Consensus        87 ~~~----------~~E~~~~~w~~~~el~~~  107 (131)
T cd03429          87 VVD----------DDELEDARWFSRDEVRAA  107 (131)
T ss_pred             cCC----------chhhhccEeecHHHHhhc
Confidence            221          247889999999999886

Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.

>PRK00241 nudC NADH pyrophosphatase; Reviewed

Probab=99.69  E-value=4.2e-16  Score=129.79  Aligned_cols=93  Identities=14%  Similarity=0.133  Sum_probs=67.1

Q ss_pred             cEEEEEEee---CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcc
Q psy7748          74 ANVLMQMRF---DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDV  149 (232)
Q Consensus        74 ~~vLl~~R~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (232)
                      +++|+.+|.   +|.|++|||++|+|||+++||+||++||||+++. ...+...   ..  ...+..+++|.+....+++
T Consensus       143 ~~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s~---~~--~~p~~lm~~f~a~~~~~~~  217 (256)
T PRK00241        143 DEILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVGSQ---PW--PFPHSLMLGFHADYDSGEI  217 (256)
T ss_pred             CEEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEEeE---ee--cCCCeEEEEEEEEecCCcc
Confidence            356666652   3799999999999999999999999999999987 5433221   11  1224566777777654443


Q ss_pred             cccccccccccCCCccceeeEeeeCccccccc
Q psy7748         150 LEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       150 ~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      ...          +.|+.++.|+++++++.+.
T Consensus       218 ~~~----------~~Ei~~a~W~~~del~~lp  239 (256)
T PRK00241        218 VFD----------PKEIADAQWFRYDELPLLP  239 (256)
T ss_pred             cCC----------cccEEEEEEECHHHCcccC
Confidence            222          2488999999999998753

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.69  E-value=2.7e-16  Score=118.39  Aligned_cols=110  Identities=20%  Similarity=0.211  Sum_probs=68.7

Q ss_pred             eEEEEEEecCCceEEEEeccCcEEEEEEeeC-CeeecceeecCCCCCHHHHHhHHHHHhhCCCC-c-ceeeeceee-eee
Q psy7748          53 ASHCMIFAYNDDKIFATYTARANVLMQMRFD-GYIGFPGGLVDAGESPLEALNRELNEEINLNP-K-YKVKDSDLV-CIH  128 (232)
Q Consensus        53 a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~-g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~-~-~~~~~~~~~-~~~  128 (232)
                      ++++++++.+            .||+.++.. +.|.||||++++||++.+||+||++||||+.+ . ...+..... ...
T Consensus         2 ~~~~ii~~~~------------~vLLv~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~   69 (131)
T cd04686           2 AVRAIILQGD------------KILLLYTKRYGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPW   69 (131)
T ss_pred             cEEEEEEECC------------EEEEEEEcCCCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeeccc
Confidence            4566666643            456656644 78999999999999999999999999999987 3 322222211 111


Q ss_pred             ecC---CcEEEEEEEEEEeecCcccccccccccccC-CCccceeeEeeeCcccccc
Q psy7748         129 YSQ---SKKIILHFYALQVEKTDVLEIEKGALTSHD-YGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       129 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~E~~~~~wvpl~el~~~  180 (232)
                      ...   ..+...++|.|.+........      ..+ +......+.|+|++++.+.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~e~~~~~~~~W~~~~ea~~~  119 (131)
T cd04686          70 RKPDADIFHMISYYYLCEVDAELGAQQ------LEDYEAELGMKPIWINIHEAIEH  119 (131)
T ss_pred             cCCCCceeEEEEEEEEEEEcCCcCCcc------cchhhHhcCCCcEEecHHHHHHh
Confidence            111   224567788887754321110      000 0012356899999988764

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily

Probab=99.68  E-value=2.4e-16  Score=118.91  Aligned_cols=98  Identities=13%  Similarity=0.012  Sum_probs=67.8

Q ss_pred             CcEEEEEEee---CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCcceeeec----eeeeeeec-----CCcEEEEEEE
Q psy7748          73 RANVLMQMRF---DGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDS----DLVCIHYS-----QSKKIILHFY  140 (232)
Q Consensus        73 ~~~vLl~~R~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~  140 (232)
                      +..+|+.+|.   .|.|.||||++++|||+.+||.||++||||+.+...++..    .+.+....     ...+...++|
T Consensus        12 ~~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f   91 (132)
T cd04661          12 DTLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVRNEGIVGAKVFFF   91 (132)
T ss_pred             CcEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCcccccccCcccEEEEE
Confidence            3456666663   3689999999999999999999999999999876221111    11111110     1123567888


Q ss_pred             EEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         141 ALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      .+....+.+...           .|..++.|++++++++.+
T Consensus        92 ~~~~~~g~~~~~-----------~e~~~~~W~~~~el~~~l  121 (132)
T cd04661          92 KARYMSGQFELS-----------QNQVDFKWLAKEELQKYL  121 (132)
T ss_pred             EEEEecCccccC-----------CCcceeEecCHHHHHhhc
Confidence            888766544321           478899999999999865

MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.

>PRK15393 NUDIX hydrolase YfcD; Provisional

Probab=99.68  E-value=3.5e-16  Score=124.07  Aligned_cols=107  Identities=18%  Similarity=0.190  Sum_probs=70.7

Q ss_pred             ccceEEEEEEecCCceEEEEeccCcEEEEEEee------CCee-ecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeee
Q psy7748          50 GYHASHCMIFAYNDDKIFATYTARANVLMQMRF------DGYI-GFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKD  121 (232)
Q Consensus        50 ~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~------~g~w-~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~  121 (232)
                      ...++.+++++.+           +.+|+++|.      +|.| .+|||++++|||+++||+|||+||||+.+. .....
T Consensus        36 ~h~~~~v~v~~~~-----------g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~~~  104 (180)
T PRK15393         36 RHRATYIVVHDGM-----------GKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAEHG  104 (180)
T ss_pred             ceEEEEEEEECCC-----------CeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccceece
Confidence            3455555666654           457788883      3555 589999999999999999999999999875 43222


Q ss_pred             ceeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         122 SDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      ..+.   .........++|.+... +.....          ..|..++.|++++++.+++
T Consensus       105 ~~~~---~~~~~~~~~~~f~~~~~-~~~~~~----------~~E~~~~~W~~~~el~~~~  150 (180)
T PRK15393        105 QFYF---EDENCRVWGALFSCVSH-GPFALQ----------EEEVSEVCWMTPEEITARC  150 (180)
T ss_pred             eEEe---cCCCceEEEEEEEEEeC-CCCCCC----------hHHeeEEEECCHHHHhhhh
Confidence            2211   11222344455655432 222111          2588999999999999875

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1

Probab=99.68  E-value=1.9e-16  Score=123.00  Aligned_cols=118  Identities=17%  Similarity=0.097  Sum_probs=79.3

Q ss_pred             CCccceEEEEEEecCCceEEEEeccCcEEEEEEe------eCCeeecc-eeecCCCCCHHHHHhHHHHHhhCCCCc-ce-
Q psy7748          48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMR------FDGYIGFP-GGLVDAGESPLEALNRELNEEINLNPK-YK-  118 (232)
Q Consensus        48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R------~~g~w~lP-gG~ve~gEs~~~aa~REl~EEtGl~~~-~~-  118 (232)
                      .-++.++++++++.+           +++|+++|      ++|.|++| ||+++.||  .+||+||++||||+.+. .. 
T Consensus        24 g~~h~~v~v~v~~~~-----------g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l   90 (158)
T TIGR02150        24 TPLHRAFSVFLFNEE-----------GQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPL   90 (158)
T ss_pred             CCeEEEEEEEEEcCC-----------CeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccce
Confidence            456677788888765           35678888      35899987 79999999  49999999999999987 43 


Q ss_pred             -eeec-eeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccccCCchHHHHH
Q psy7748         119 -VKDS-DLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGLPCFLTH  190 (232)
Q Consensus       119 -~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~~~~~l~~  190 (232)
                       .+.. .+.....+ ..+.+.++|.+.... .+...          +.|+.++.|++++++.+++...+..+..
T Consensus        91 ~~~~~~~~~~~~~~-g~~~~~~~f~~~~~~-~~~~~----------~~Ev~~~~W~~~~el~~~~~~~~~~~~p  152 (158)
T TIGR02150        91 TVLPRFSYRARDAW-GEHELCPVFFARAPV-PLNPN----------PEEVAEYRWVSLEELKEILKAPWAGFSP  152 (158)
T ss_pred             EEcceEEEEEecCC-CcEEEEEEEEEecCC-cccCC----------hhHeeeEEEeCHHHHHHHHhcCccccCH
Confidence             1211 12111111 235566777776543 22221          2489999999999999987655544433

This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional

Probab=99.66  E-value=4e-16  Score=124.18  Aligned_cols=116  Identities=18%  Similarity=0.178  Sum_probs=76.7

Q ss_pred             CCccceEEEEEEecCCceEEEEeccCcEEEEEEe------eCCeeecc-eeecCCCCCHHHHHhHHHHHhhCCCCc-cee
Q psy7748          48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMR------FDGYIGFP-GGLVDAGESPLEALNRELNEEINLNPK-YKV  119 (232)
Q Consensus        48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R------~~g~w~lP-gG~ve~gEs~~~aa~REl~EEtGl~~~-~~~  119 (232)
                      ..++.++++++++.++           +||+++|      ++|.|.+| ||++++||++++||+||++||||+++. ...
T Consensus        31 ~~~h~av~v~i~~~~g-----------~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~   99 (184)
T PRK03759         31 TPLHLAFSCYLFDADG-----------RLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLEL   99 (184)
T ss_pred             CCeeeEEEEEEEcCCC-----------eEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCcccccc
Confidence            3457778888888663           4566666      35677765 799999999999999999999999986 322


Q ss_pred             eeceeeeee--ecC-CcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccccCCch
Q psy7748         120 KDSDLVCIH--YSQ-SKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGLP  185 (232)
Q Consensus       120 ~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~~~  185 (232)
                      ....+.+..  ..+ ..+...++|.+... +.+...          ..|+.++.|+|++++.+++...+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~vf~~~~~-~~~~~~----------~~Ev~~~~W~~~~el~~~i~~~~  157 (184)
T PRK03759        100 VLPDFRYRATDPNGIVENEVCPVFAARVT-SALQPN----------PDEVMDYQWVDPADLLRAVDATP  157 (184)
T ss_pred             ccceEEEEEecCCCceeeEEEEEEEEEEC-CCCCCC----------hhHeeeEEEECHHHHHHHHHhCC
Confidence            111121111  111 12345567777654 222221          24889999999999999865443

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.66  E-value=8.4e-16  Score=116.01  Aligned_cols=114  Identities=21%  Similarity=0.198  Sum_probs=74.6

Q ss_pred             ceEEEEEEecCCceEEEEeccCcEEEEEEee------CCeeecceeecCCCCCHHHHHhHHHHHhhCCCC-c-cee-eec
Q psy7748          52 HASHCMIFAYNDDKIFATYTARANVLMQMRF------DGYIGFPGGLVDAGESPLEALNRELNEEINLNP-K-YKV-KDS  122 (232)
Q Consensus        52 ~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~------~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~-~-~~~-~~~  122 (232)
                      +++.+++++.++           .+|++++.      ++.|.+|||+++.||++.+||.||++||||+.+ . ... ...
T Consensus         1 ~~~~~~i~~~~g-----------~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~~~   69 (133)
T cd04685           1 RAARVVLLDPDD-----------RVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPVWRR   69 (133)
T ss_pred             CeEEEEEEcCCC-----------eEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceEEEE
Confidence            367788888764           45665552      368999999999999999999999999999998 4 322 222


Q ss_pred             eeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         123 DLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      .+.+.......+...++|.+...........   .. ..+..+...+.|++++++.+.
T Consensus        70 ~~~f~~~~~~~~~~~~~f~~~~~~~~~~~~~---~~-~~E~~~~~~~~W~~~~el~~~  123 (133)
T cd04685          70 DAAFTFLGVDGRQEERFFLARTPRTEPSPAG---WT-ALERRSILGWRWWTRAELAAT  123 (133)
T ss_pred             EEEEEecCccceeeEEEEEEEcCCccccCCC---CC-hhhhhhcccccCCCHHHHhhC
Confidence            2223332223345667888877643222111   00 011124568999999999875

Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.65  E-value=6.8e-16  Score=122.44  Aligned_cols=117  Identities=15%  Similarity=0.148  Sum_probs=78.5

Q ss_pred             CCccceEEEEEEecCCceEEEEeccCcEEEEEEe------eCCee-ecceeecCCCCCHHHHHhHHHHHhhCCCCc-ce-
Q psy7748          48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMR------FDGYI-GFPGGLVDAGESPLEALNRELNEEINLNPK-YK-  118 (232)
Q Consensus        48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R------~~g~w-~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~-  118 (232)
                      .-+++++.++++..+..       ..+.|++|+|      ++|+| .+|||+++.||++.+||+||++||||+.+. .. 
T Consensus        29 g~~h~~v~~~~~~~~~~-------~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~  101 (180)
T cd03676          29 GLVTYGVHLNGYVRDED-------GGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQ  101 (180)
T ss_pred             CceEEEEEEEEEEEcCC-------CCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhh
Confidence            45667777655543311       1257899999      56999 699999999999999999999999999976 33 


Q ss_pred             e--ee-ceeeee-eecCCcEEEEEEEEEEeecCc-ccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         119 V--KD-SDLVCI-HYSQSKKIILHFYALQVEKTD-VLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       119 ~--~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      +  .. ..+.+. ......+...++|.+.+.... +.+          .+.|+.++.|+|++++.+++
T Consensus       102 l~~~g~~~~~~~~~~~~~~~e~~~~f~~~~~~~~~~~~----------~~~Ev~~~~~~~~~el~~~l  159 (180)
T cd03676         102 LKPVGVVSYLREGEAGGLQPEVEYVYDLELPPDFIPAP----------QDGEVESFRLLTIDEVLRAL  159 (180)
T ss_pred             ceeccEEEEEEEcCCCcEeeeEEEEEEEEcCCCCeeCC----------CCCcEeEEEEECHHHHHHHH
Confidence            1  11 122221 111123456677776653222 111          12589999999999999886

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.65  E-value=7.6e-16  Score=114.99  Aligned_cols=94  Identities=26%  Similarity=0.232  Sum_probs=62.4

Q ss_pred             EEEEEEee------CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecC
Q psy7748          75 NVLMQMRF------DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKT  147 (232)
Q Consensus        75 ~vLl~~R~------~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (232)
                      .+|+++|.      +|.|++|||++++||++.+||.||++||||+.+. ......... .......+...++|.+.....
T Consensus        14 ~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   92 (129)
T cd04699          14 RILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRYPSTVT-HEDSGVYNVIYLVFVCEALSG   92 (129)
T ss_pred             cEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeeeeeEEEE-EcCCCEEEEEEEEEEeeecCC
Confidence            56777773      5789999999999999999999999999999887 433211111 111111345555666544322


Q ss_pred             cccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         148 DVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       148 ~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      ....           +.|..++.|+|++++..+
T Consensus        93 ~~~~-----------~~e~~~~~w~~~~el~~~  114 (129)
T cd04699          93 AVKL-----------SDEHEEYAWVTLEELAIL  114 (129)
T ss_pred             cccC-----------ChhheEEEEecHHHhhhh
Confidence            1111           147788999999998654

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD

Probab=99.65  E-value=1.5e-15  Score=116.89  Aligned_cols=118  Identities=23%  Similarity=0.211  Sum_probs=78.2

Q ss_pred             EEEEEEeeCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcccccc
Q psy7748          75 NVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIE  153 (232)
Q Consensus        75 ~vLl~~R~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (232)
                      .+|+.+++...|++|||++++||++++||+||++||||+.+. +..++..+....   ......++|.+........   
T Consensus        36 ~~LL~~~~~~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~~~~~~~---~~~~~~~vf~A~~~~~~~~---  109 (156)
T TIGR02705        36 QWLLTEHKRRGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQYEVEGE---STDFVKDVYFAEVSALESK---  109 (156)
T ss_pred             EEEEEEEcCCcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEEEEecCC---CcEEEEEEEEEEEeccccC---
Confidence            345555556679999999999999999999999999999987 655554333222   3466777777776633211   


Q ss_pred             cccccccCCCccceeeE-eeeCcccccccCCchHHHHHHHHHHHHHHHHHHHHhCCC
Q psy7748         154 KGALTSHDYGVEVLGTV-RVPLYTMGDGFRGLPCFLTHSFIGNAKHQLLAALLKLKI  209 (232)
Q Consensus       154 ~~~~~~~~~~~E~~~~~-wvpl~el~~~i~~~~~~l~~~~i~~~~~~l~~~l~~~~~  209 (232)
                                .|.+++. +++++++++++..-+.| .--+-++.-.+.+..++..++
T Consensus       110 ----------~e~~E~~~~~~~~~~~~~~~~g~~~-s~~~~d~~~~~~~~~~~~~~~  155 (156)
T TIGR02705       110 ----------DDYLETKGPVLLQEIPDIIKADPRF-SFIMKDDVLLKCLERAKHIGF  155 (156)
T ss_pred             ----------CCceeeEeEEEHHHHHHHHhcCCcc-cEEEchHHHHHHHHHHHHccC
Confidence                      3667777 79999999987544421 111223333445555555544

The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.

>PRK10707 putative NUDIX hydrolase; Provisional

Probab=99.65  E-value=1.4e-15  Score=121.40  Aligned_cols=113  Identities=19%  Similarity=0.150  Sum_probs=72.0

Q ss_pred             CCccceEEEEEEecCCceEEEEeccCcEEEEEEe------eCCeeecceeecCCC-CCHHHHHhHHHHHhhCCCCc-cee
Q psy7748          48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMR------FDGYIGFPGGLVDAG-ESPLEALNRELNEEINLNPK-YKV  119 (232)
Q Consensus        48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R------~~g~w~lPgG~ve~g-Es~~~aa~REl~EEtGl~~~-~~~  119 (232)
                      ..++.+++++++..++.         ..+|+++|      +.|.|+||||++|++ |++++||+||++||||+.+. +..
T Consensus        27 ~~~~~aavvl~l~~~~~---------~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~   97 (190)
T PRK10707         27 LNQRQAAVLIPIVRRPQ---------PTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEV   97 (190)
T ss_pred             ccCCCeEEEEEEEECCC---------CEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEE
Confidence            34566777776653321         24566664      448999999999986 58999999999999999988 655


Q ss_pred             eeceeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         120 KDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      +...+......   ....+.+.+.+......        ..+ .+|+.++.|+|++++.++.
T Consensus        98 lg~l~~~~~~~---~~~~~~~v~~~~~~~~~--------~~d-~~Ev~~v~~vpl~e~~~~~  147 (190)
T PRK10707         98 IGVLPPVDSST---GYQVTPVVGIIPPDLPY--------RAN-EDEVAAVFEMPLAEALHLG  147 (190)
T ss_pred             EEEeeeeeccC---CcEEEEEEEEECCCCCC--------CCC-hhhhheEEEEeHHHHhCcc
Confidence            55544322221   12233333333222110        112 2589999999999987763

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.64  E-value=2.8e-15  Score=111.08  Aligned_cols=56  Identities=29%  Similarity=0.445  Sum_probs=45.5

Q ss_pred             eEEEEEEecCCceEEEEeccCcEEEEEEe--------eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc
Q psy7748          53 ASHCMIFAYNDDKIFATYTARANVLMQMR--------FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK  116 (232)
Q Consensus        53 a~~~vi~~~~~~~v~~~~~~~~~vLl~~R--------~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~  116 (232)
                      ++++|+++.+..        ...||+.+|        ..+.|++|||+++.||++.+||+||++||||+++.
T Consensus         2 ~~g~v~~~~~~~--------~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~   65 (126)
T cd04662           2 SAGILLYRFRDG--------RIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD   65 (126)
T ss_pred             eEEEEEEEEcCC--------cEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence            577777775532        335677763        34799999999999999999999999999999876

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.64  E-value=5.2e-15  Score=111.64  Aligned_cols=92  Identities=25%  Similarity=0.270  Sum_probs=63.2

Q ss_pred             cEEEEEEee-----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecC
Q psy7748          74 ANVLMQMRF-----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKT  147 (232)
Q Consensus        74 ~~vLl~~R~-----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (232)
                      +.+|+++|.     +|.|+||||++++||++.+||.||++||||+.+. ...+...   .+.........++|.+....+
T Consensus        15 ~~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~   91 (135)
T PRK10546         15 GKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYVASH---QREVSGRRIHLHAWHVPDFHG   91 (135)
T ss_pred             CEEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeEEEE---EEecCCcEEEEEEEEEEEecC
Confidence            357777772     4799999999999999999999999999999987 3322211   111122344556666654333


Q ss_pred             cccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         148 DVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       148 ~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      .+..            .|..++.|++++++.++
T Consensus        92 ~~~~------------~e~~~~~W~~~~el~~~  112 (135)
T PRK10546         92 ELQA------------HEHQALVWCTPEEALRY  112 (135)
T ss_pred             cccc------------cccceeEEcCHHHcccC
Confidence            2211            24568899999999886

>PLN03143 nudix hydrolase; Provisional

Probab=99.63  E-value=5.9e-15  Score=124.04  Aligned_cols=143  Identities=13%  Similarity=0.068  Sum_probs=81.4

Q ss_pred             ccCcc-ccccccCCcccccccCCccceEEEEEE-ecCCceEEEEeccCcEEEEEEeeC---CeeecceeecCCC-CCHHH
Q psy7748          28 STNLN-DFIELTQSDLKDDKYKSGYHASHCMIF-AYNDDKIFATYTARANVLMQMRFD---GYIGFPGGLVDAG-ESPLE  101 (232)
Q Consensus        28 ~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~vi~-~~~~~~v~~~~~~~~~vLl~~R~~---g~w~lPgG~ve~g-Es~~~  101 (232)
                      |++++ +.+.+++|............+++++++ +.++..-       ..++.|.|++   ..|+||||.+|++ |++++
T Consensus       104 flkv~~d~~~l~~G~~~~~~v~~rg~aVaVL~~l~~~ge~~-------VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~  176 (291)
T PLN03143        104 FLKFKADIIDKETGQKVPGIVFARGPAVAVLILLESEGETY-------AVLTEQVRVPVGKFVLELPAGMLDDDKGDFVG  176 (291)
T ss_pred             EEEEEEEEEECCCCCEeeEEEEEcCCeEEEEEEEeCCCCEE-------EEEEEeEecCCCcEEEEecccccCCCCCCHHH
Confidence            45777 888889886544333333345555544 3332210       1234566643   3799999999985 79999


Q ss_pred             HHhHHHHHhhCCCCc---ceeee---------ceeeeeeecCCcEEEEEEEEEEeecCcccc--cccccccccCCCccce
Q psy7748         102 ALNRELNEEINLNPK---YKVKD---------SDLVCIHYSQSKKIILHFYALQVEKTDVLE--IEKGALTSHDYGVEVL  167 (232)
Q Consensus       102 aa~REl~EEtGl~~~---~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~E~~  167 (232)
                      ||+||++||||+.+.   +..+.         ..+.+.+.   .....++|.+.........  .........++ .|.+
T Consensus       177 aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~~v~pspG~---~dE~i~Lfla~~~v~~~~l~~l~~~~~~l~de-gE~I  252 (291)
T PLN03143        177 TAVREVEEETGIKLKLEDMVDLTAFLDPSTGCRMFPSPGG---CDEEISLFLYRGHVDKETIRQLQGKETGLRDH-GELI  252 (291)
T ss_pred             HHHHHHHHHHCCccccceEEEeeeccccCcCceEEecCCc---cCCeEEEEEEccccchhhhcccccccCCCCCC-CcEE
Confidence            999999999999864   22221         22222222   2234445544322111100  00001112233 5899


Q ss_pred             eeEeeeCccccccc
Q psy7748         168 GTVRVPLYTMGDGF  181 (232)
Q Consensus       168 ~~~wvpl~el~~~i  181 (232)
                      ++.|+|++++..++
T Consensus       253 ev~~vpl~eiw~~~  266 (291)
T PLN03143        253 KVHVVPYRELWRMT  266 (291)
T ss_pred             EEEEEEHHHHHHHH
Confidence            99999999977764

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional

Probab=99.61  E-value=1.8e-14  Score=107.46  Aligned_cols=92  Identities=25%  Similarity=0.358  Sum_probs=62.8

Q ss_pred             cEEEEEEee-----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecC
Q psy7748          74 ANVLMQMRF-----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKT  147 (232)
Q Consensus        74 ~~vLl~~R~-----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (232)
                      +++|+++|.     +|.|+||||++++||++.+||.||++||||+++. .......   .+.........++|.+.....
T Consensus        16 ~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~   92 (129)
T PRK10776         16 NEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEKL---EYEFPDRHITLWFWLVESWEG   92 (129)
T ss_pred             CEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceEEEEE---EeeCCCcEEEEEEEEEEEECC
Confidence            367888883     4899999999999999999999999999999876 3322111   111122345556666654322


Q ss_pred             cccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         148 DVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       148 ~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      .+.            ..|..++.|+++++++..
T Consensus        93 ~~~------------~~e~~~~~W~~~~~l~~~  113 (129)
T PRK10776         93 EPW------------GKEGQPGRWVSQVALNAD  113 (129)
T ss_pred             ccC------------CccCCccEEecHHHCccC
Confidence            211            125667899999999874

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.61  E-value=4.9e-15  Score=113.13  Aligned_cols=53  Identities=36%  Similarity=0.460  Sum_probs=44.0

Q ss_pred             eEEEEEEecCCceEEEEeccCcEEEEEEe------eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc
Q psy7748          53 ASHCMIFAYNDDKIFATYTARANVLMQMR------FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK  116 (232)
Q Consensus        53 a~~~vi~~~~~~~v~~~~~~~~~vLl~~R------~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~  116 (232)
                      ++++++++.+           +++|+++|      ++|.|++|||++++||++++||+||++||||+.+.
T Consensus         3 ~v~viv~~~~-----------~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~   61 (143)
T cd04694           3 GVAVLLQSSD-----------QKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLD   61 (143)
T ss_pred             EEEEEEEcCC-----------CEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCcc
Confidence            4555556654           46778877      35799999999999999999999999999999876

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional

Probab=99.60  E-value=8.6e-15  Score=126.96  Aligned_cols=99  Identities=25%  Similarity=0.312  Sum_probs=66.1

Q ss_pred             cEEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeece---eeeeeec--CCcEEEEEEEEEE
Q psy7748          74 ANVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSD---LVCIHYS--QSKKIILHFYALQ  143 (232)
Q Consensus        74 ~~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~---~~~~~~~--~~~~~~~~~~~~~  143 (232)
                      +.||+.+|.    +|.|.+|||++++|||+++||+||++||||+++. ..+....   ..+....  ...+...++|.+.
T Consensus       214 g~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~p~r~~~~~~i~~~f~~~  293 (340)
T PRK05379        214 GHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDHPGRSLRGRTITHAFLFE  293 (340)
T ss_pred             CEEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcCCCCCCCCcEEEEEEEEE
Confidence            357777773    4789999999999999999999999999999876 3222111   1111111  1235566777776


Q ss_pred             eecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         144 VEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      +..+.....       . .++|..++.|+|++++..+
T Consensus       294 ~~~~~~~~~-------~-~~de~~~~~W~~~~el~~~  322 (340)
T PRK05379        294 FPAGELPRV-------K-GGDDADKARWVPLAELLAM  322 (340)
T ss_pred             ecCCccCcc-------C-CCCceeeEEEEEHHHhhhh
Confidence            654331110       0 1247889999999998864

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.59  E-value=2e-14  Score=106.91  Aligned_cols=101  Identities=22%  Similarity=0.121  Sum_probs=58.0

Q ss_pred             EEEEEEeeCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcccccc
Q psy7748          75 NVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIE  153 (232)
Q Consensus        75 ~vLl~~R~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (232)
                      .|++.+...+.|+||||++++||++.+||+||++||||+.+. .......+.....  ......+++.+...........
T Consensus        15 ~ll~~r~~~~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~   92 (126)
T cd04663          15 ELLVFEHPLAGFQIVKGTVEPGETPEAAALRELQEESGLPSFLSDYILHVWERRFY--QKRHFWHLTLCEVDQDLPDSWV   92 (126)
T ss_pred             EEEEEEcCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCeeeeeeecceeeeCCEe--eccEEEEEEEEEecCCCccccc
Confidence            344444444679999999999999999999999999999973 1111111111111  1123333344433211111111


Q ss_pred             cccccccCCCccceeeEeeeCcccccc
Q psy7748         154 KGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       154 ~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                        .. ....+.+.+.+.|+|++++.++
T Consensus        93 --~~-~~~~E~~~i~~~Wv~l~~~~~~  116 (126)
T cd04663          93 --HF-VQDDGGHEFRFFWVDLASCLDE  116 (126)
T ss_pred             --Cc-ccCCCCceEEEEEEcccccccc
Confidence              11 1112346788899999999765

Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are

>TIGR00586 mutt mutator mutT protein

Probab=99.59  E-value=3.2e-14  Score=106.14  Aligned_cols=92  Identities=20%  Similarity=0.286  Sum_probs=64.6

Q ss_pred             cEEEEEEee-----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecC
Q psy7748          74 ANVLMQMRF-----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKT  147 (232)
Q Consensus        74 ~~vLl~~R~-----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (232)
                      +.+|+++|.     +|.|+||||.++.||++++|++||++||||+.+. ........   +..+..+...++|.+....+
T Consensus        16 ~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~~~~~~---h~~~~~~~~~~~~~~~~~~~   92 (128)
T TIGR00586        16 GEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEFEKLEY---EFYPRHITLWFWLLERWEGG   92 (128)
T ss_pred             CEEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEE---EECCCcEEEEEEEEEEEcCC
Confidence            357888883     4799999999999999999999999999999876 32222111   11223456677777765433


Q ss_pred             cccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         148 DVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       148 ~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      ....            .+..++.|++++++.+.
T Consensus        93 ~~~~------------~~~~~~~W~~~~~l~~~  113 (128)
T TIGR00586        93 PPGK------------EGQPEEWWVLVGLLADD  113 (128)
T ss_pred             CcCc------------ccccccEEeCHHHCCcc
Confidence            2211            23456799999999985

All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG3041|consensus

Probab=99.58  E-value=1.5e-14  Score=112.19  Aligned_cols=150  Identities=15%  Similarity=0.193  Sum_probs=96.0

Q ss_pred             ceeeee-ecCCccCcc-ccccccCCccccccc-CCcc------ceEEEEEEecCCceEEEEeccCcEEEEEEeeC---C-
Q psy7748          18 LAATEV-YGRPSTNLN-DFIELTQSDLKDDKY-KSGY------HASHCMIFAYNDDKIFATYTARANVLMQMRFD---G-   84 (232)
Q Consensus        18 ~~~~~v-y~~~~~~~~-~~~~~~~~~~~~~~~-~~~~------~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~---g-   84 (232)
                      +....+ +.++|++++ -.+..|.|....+.. .+..      .+++++++-..        +...++++++.++   | 
T Consensus        31 ~~~~~ie~~~kWi~Lkkv~~qD~~GKir~wes~~Rttr~ea~~dgVaIl~il~~--------dG~~~ivL~kQfRpP~Gk  102 (225)
T KOG3041|consen   31 IEVEDIESDGKWIRLKKVLYQDPTGKIRDWESVQRTTRVEARADGVAILAILES--------DGKPYIVLVKQFRPPTGK  102 (225)
T ss_pred             eeeecccCCccEEEEEEEEEEcCCCceeeeehheecccccccCCeEEEEEEEec--------CCcEEEEEEEeecCCCCc
Confidence            455555 899999999 788889988766665 1111      22333332222        2334667766643   4 


Q ss_pred             -eeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCC
Q psy7748          85 -YIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDY  162 (232)
Q Consensus        85 -~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (232)
                       ..+||+|.++.||+++.||+|||+|||||..+ ...-...+..++.. +++.+..++..+.+..     +.+.....-+
T Consensus       103 ~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~~~s~~~f~DPGlt-n~~~~iv~v~idg~~p-----Enqrp~q~le  176 (225)
T KOG3041|consen  103 ICIELPAGLIDDGEDFEGAAIRELEEETGYKGKVDMVSPTVFLDPGLT-NCNLCIVVVDIDGDVP-----ENQRPVQQLE  176 (225)
T ss_pred             EEEEcccccccCCCchHHHHHHHHHHHhCccceeeeccccEEcCCCCC-CCceEEEEEEecCCCc-----cccCccccCC
Confidence             67999999999999999999999999999965 33333334444443 3444444444433322     2222223333


Q ss_pred             CccceeeEeeeCccccccc
Q psy7748         163 GVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       163 ~~E~~~~~wvpl~el~~~i  181 (232)
                      +.|.++++-+|+++|.+.+
T Consensus       177 dgEfIev~~i~~~~L~~~~  195 (225)
T KOG3041|consen  177 DGEFIEVFLIPLSELWREL  195 (225)
T ss_pred             CCceEEEEEeeHHHHHHHH
Confidence            4699999999999988764

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.58  E-value=2.6e-14  Score=104.83  Aligned_cols=107  Identities=21%  Similarity=0.204  Sum_probs=72.7

Q ss_pred             eEEEEEEecCCceEEEEeccCcEEEEEEee---CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeee
Q psy7748          53 ASHCMIFAYNDDKIFATYTARANVLMQMRF---DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIH  128 (232)
Q Consensus        53 a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~  128 (232)
                      ++++++++.+           +++|+++|.   .|.|.+|||+++.||++.+||.||+.||+|+.+. ........ ...
T Consensus         2 ~~~~i~~~~~-----------~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~~~-~~~   69 (123)
T cd02883           2 AVGAVILDED-----------GRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYE-VES   69 (123)
T ss_pred             ceEEEEECCC-----------CCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEEEEE-eec
Confidence            4566666654           346777775   4899999999999999999999999999999875 22222111 111


Q ss_pred             ecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         129 YSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      .........++|.+........         .....|.....|++++++.+.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~e~~~~~w~~~~~l~~~  112 (123)
T cd02883          70 PDEGEHAVVFVFLARLVGGEPT---------LLPPDEISEVRWVTLDELPAL  112 (123)
T ss_pred             cCCCceEEEEEEEEEeCCCCcC---------CCCCCccceEEEEcHHHCccc
Confidence            1123466777787776644321         011246778899999998874

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.58  E-value=3.4e-14  Score=104.87  Aligned_cols=90  Identities=22%  Similarity=0.164  Sum_probs=61.8

Q ss_pred             EEEEEEeeCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcccccc
Q psy7748          75 NVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIE  153 (232)
Q Consensus        75 ~vLl~~R~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (232)
                      .+|+.++..+.|++|||+++.||++++||+||++||||+.+. ...+..+.....   .......+|.+.......... 
T Consensus        12 ~vLl~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~~---~~~~~~~~y~a~~~~~~~~~~-   87 (118)
T cd04665          12 GLLLVRHKDRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQVDLF---ESGFETLVYPAVSAQLEEKAS-   87 (118)
T ss_pred             EEEEEEeCCCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEEEEEEEecCC---CCcEEEEEEEEEEEecccccc-
Confidence            456666667899999999999999999999999999999987 544443322211   123445556665554433212 


Q ss_pred             cccccccCCCccceeeEeeeCccc
Q psy7748         154 KGALTSHDYGVEVLGTVRVPLYTM  177 (232)
Q Consensus       154 ~~~~~~~~~~~E~~~~~wvpl~el  177 (232)
                               +.|+....|++....
T Consensus        88 ---------~~E~~~~~~~~~~~~  102 (118)
T cd04665          88 ---------YLETDGPVLFKNEPE  102 (118)
T ss_pred             ---------cccccCcEEeccCCc
Confidence                     257888888887554

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X

Probab=99.54  E-value=2.3e-13  Score=100.29  Aligned_cols=34  Identities=35%  Similarity=0.639  Sum_probs=32.5

Q ss_pred             CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc
Q psy7748          83 DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK  116 (232)
Q Consensus        83 ~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~  116 (232)
                      +|.|+||||++++||++.+||.||++||||+.+.
T Consensus        28 ~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~   61 (118)
T cd04674          28 RGKLALPGGFIELGETWQDAVARELLEETGVAVD   61 (118)
T ss_pred             CCeEECCceecCCCCCHHHHHHHHHHHHHCCccc
Confidence            4899999999999999999999999999999986

Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate

>PLN02709 nudix hydrolase

Probab=99.53  E-value=4.1e-14  Score=114.40  Aligned_cols=93  Identities=22%  Similarity=0.238  Sum_probs=62.8

Q ss_pred             cEEEEEEe------eCCeeecceeecCCCC-CHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEee
Q psy7748          74 ANVLMQMR------FDGYIGFPGGLVDAGE-SPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVE  145 (232)
Q Consensus        74 ~~vLl~~R------~~g~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (232)
                      ..+|+.+|      ++|.|+||||++|++| ++.+||+||+.||+|+... ..+++........  . ...++-|.+.+.
T Consensus        51 ~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~~~t~--s-g~~V~P~V~~~~  127 (222)
T PLN02709         51 LRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEPFVNK--K-GMSVAPVIGFLH  127 (222)
T ss_pred             eEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCCeECC--C-CCEEEEEEEEec
Confidence            36777777      5699999999999985 7999999999999999887 5555443332221  1 233444444443


Q ss_pred             c---CcccccccccccccCCCccceeeEeeeCccccc
Q psy7748         146 K---TDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGD  179 (232)
Q Consensus       146 ~---~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~  179 (232)
                      .   ..+...          ..|+.+++|+|++.+.+
T Consensus       128 ~~~~~~~~~n----------p~EV~~vf~vPL~~ll~  154 (222)
T PLN02709        128 DKKAFKPLPN----------PAEVEEIFDVPLEMFLK  154 (222)
T ss_pred             CCCCccccCC----------hhhhheeEEecHHHHhC
Confidence            2   111111          15899999999987764

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)

Probab=99.52  E-value=1.1e-13  Score=102.04  Aligned_cols=92  Identities=28%  Similarity=0.426  Sum_probs=64.3

Q ss_pred             cEEEEEEe-----eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecC
Q psy7748          74 ANVLMQMR-----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKT  147 (232)
Q Consensus        74 ~~vLl~~R-----~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (232)
                      +.+|+++|     ++|.|.||||+++.+|++++||.||++||||+.+. ...+...   .+..+..+...++|.+.....
T Consensus        13 ~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~   89 (124)
T cd03425          13 GRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELLATV---EHDYPDKRVTLHVFLVELWSG   89 (124)
T ss_pred             CEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceEEEE---EeeCCCCeEEEEEEEEeeeCC
Confidence            45677776     35799999999999999999999999999999876 3222211   111123355667777765433


Q ss_pred             cccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         148 DVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       148 ~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      ...            ..|..++.|++++++.+.
T Consensus        90 ~~~------------~~e~~~~~W~~~~el~~~  110 (124)
T cd03425          90 EPQ------------LLEHQELRWVPPEELDDL  110 (124)
T ss_pred             Ccc------------cccCceEEEeeHHHcccC
Confidence            221            135678999999999875

This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]

Probab=99.49  E-value=3.7e-14  Score=117.10  Aligned_cols=86  Identities=17%  Similarity=0.201  Sum_probs=68.5

Q ss_pred             eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCccccccccccccc
Q psy7748          82 FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSH  160 (232)
Q Consensus        82 ~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (232)
                      ++|.|.+-+|.||+|||+++|++||++||+|+.+. +.     |..+...+..+..++-|.+.+..++...+.       
T Consensus       166 ~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vr-----Y~~SQPWPfP~SLMigf~aey~sgeI~~d~-------  233 (279)
T COG2816         166 FPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVR-----YVGSQPWPFPHSLMLGFMAEYDSGEITPDE-------  233 (279)
T ss_pred             CCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeee-----EEeccCCCCchhhhhhheeeeccccccCCc-------
Confidence            56899999999999999999999999999999998 42     333333344567788888888888766554       


Q ss_pred             CCCccceeeEeeeCcccccccC
Q psy7748         161 DYGVEVLGTVRVPLYTMGDGFR  182 (232)
Q Consensus       161 ~~~~E~~~~~wvpl~el~~~i~  182 (232)
                         .|..++.||+.+++..++.
T Consensus       234 ---~Eleda~WFs~~evl~~L~  252 (279)
T COG2816         234 ---GELEDARWFSRDEVLPALP  252 (279)
T ss_pred             ---chhhhccccCHhHHhhhcC
Confidence               6999999999999555543

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P

Probab=99.46  E-value=1.5e-12  Score=103.07  Aligned_cols=42  Identities=33%  Similarity=0.433  Sum_probs=36.4

Q ss_pred             cEEEEEEe-eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCC
Q psy7748          74 ANVLMQMR-FDGYIGFPGGLVDAGESPLEALNRELNEEINLNP  115 (232)
Q Consensus        74 ~~vLl~~R-~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~  115 (232)
                      ..+|+.+| ..|.|.||||++++||++.+||.||++||||+.+
T Consensus        49 l~vLl~~r~~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l   91 (186)
T cd03670          49 LQFVAIKRPDSGEWAIPGGMVDPGEKISATLKREFGEEALNSL   91 (186)
T ss_pred             eEEEEEEeCCCCcCcCCeeeccCCCCHHHHHHHHHHHHHcccc
Confidence            45666666 5689999999999999999999999999997754

Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.

>PLN02791 Nudix hydrolase homolog

Probab=99.46  E-value=5.7e-13  Score=124.60  Aligned_cols=125  Identities=19%  Similarity=0.230  Sum_probs=82.7

Q ss_pred             cccCCccceEEEEEEecCCceEEEEeccCcEEEEEEe------eCCeeec-ceeecCCCCCHHHHHhHHHHHhhCCCCc-
Q psy7748          45 DKYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMR------FDGYIGF-PGGLVDAGESPLEALNRELNEEINLNPK-  116 (232)
Q Consensus        45 ~~~~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R------~~g~w~l-PgG~ve~gEs~~~aa~REl~EEtGl~~~-  116 (232)
                      +....+++++.+++++.+.          ++||+|+|      ++|.|.+ |||+++.||++.+||+||++||+|+.+. 
T Consensus        26 H~~Gl~HrAvhVwIfn~~~----------gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~   95 (770)
T PLN02791         26 HRDGDYHRAVHVWIYSEST----------QELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPK   95 (770)
T ss_pred             ccCCCceEEEEEEEEECCC----------CeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCCh
Confidence            3336678889999998632          46899999      5799998 7999999999999999999999999865 


Q ss_pred             --ceeeece-eeeeeecC--CcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccccCCch
Q psy7748         117 --YKVKDSD-LVCIHYSQ--SKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGLP  185 (232)
Q Consensus       117 --~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~~~  185 (232)
                        +..+... +......+  ..+.+.++|.+......+.  +  .+.. . ..|+.++.|++++++.+++...+
T Consensus        96 ~~l~~l~~~~~~~~~~~g~~~e~E~~~VYlv~~~~~~p~--~--~~~l-q-~eEV~~v~wvsl~El~~~l~~~~  163 (770)
T PLN02791         96 DAFELLFVFLQECVINDGKFINNEYNDVYLVTTLDPIPL--E--AFTL-Q-ESEVSAVKYMSIEEYKSALAKED  163 (770)
T ss_pred             hheeeeeeEEEEeeccCCCcceeeEEEEEEEEECCCCCc--c--cCCC-C-hhhhheeEEEcHHHHHHHHhcCC
Confidence              2222221 11111111  2345666676653221110  0  0111 1 25999999999999998875533

>PLN02552 isopentenyl-diphosphate delta-isomerase

Probab=99.44  E-value=1.1e-12  Score=108.17  Aligned_cols=114  Identities=16%  Similarity=0.046  Sum_probs=70.3

Q ss_pred             CCccceEEEEEEecCCceEEEEeccCcEEEEEEe------eCCeeecc-eeecCCCCC-----------------HHHHH
Q psy7748          48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMR------FDGYIGFP-GGLVDAGES-----------------PLEAL  103 (232)
Q Consensus        48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R------~~g~w~lP-gG~ve~gEs-----------------~~~aa  103 (232)
                      .-+++++.++|++.+           ++||+|+|      +||.|... ||++..||+                 ..+||
T Consensus        53 gl~Hra~~v~i~n~~-----------g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA  121 (247)
T PLN02552         53 GLLHRAFSVFLFNSK-----------YELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAA  121 (247)
T ss_pred             CceEEEEEEEEEcCC-----------CeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHH
Confidence            567889999999876           46899999      46789444 344444321                 67899


Q ss_pred             hHHHHHhhCCCCc-cee--eece----eeeeee-----cC--CcEEEEEEEEEE-eecCcccccccccccccCCCcccee
Q psy7748         104 NRELNEEINLNPK-YKV--KDSD----LVCIHY-----SQ--SKKIILHFYALQ-VEKTDVLEIEKGALTSHDYGVEVLG  168 (232)
Q Consensus       104 ~REl~EEtGl~~~-~~~--~~~~----~~~~~~-----~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~E~~~  168 (232)
                      +||++||+|+.+. ..+  +...    +.....     +.  ..+.+.++|... .....+.+..          .|+.+
T Consensus       122 ~REL~EElGI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~~~~l~lq~----------eEV~~  191 (247)
T PLN02552        122 QRKLLHELGIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVRDVKVNPNP----------DEVAD  191 (247)
T ss_pred             HhHHHHHhCCCccccccccceeeeEEEEecccccccccCCCccceEEEEEEEEEecCCCcccCCH----------HHhhe
Confidence            9999999999964 211  1111    111110     01  113444444332 2222333332          58999


Q ss_pred             eEeeeCcccccccC
Q psy7748         169 TVRVPLYTMGDGFR  182 (232)
Q Consensus       169 ~~wvpl~el~~~i~  182 (232)
                      +.|++++++.+++.
T Consensus       192 ~~wvs~~el~~~~~  205 (247)
T PLN02552        192 VKYVNREELKEMMR  205 (247)
T ss_pred             EEEEeHHHHHHHHh
Confidence            99999999999864

>PRK08999 hypothetical protein; Provisional

Probab=99.38  E-value=3.7e-12  Score=109.41  Aligned_cols=91  Identities=24%  Similarity=0.275  Sum_probs=62.9

Q ss_pred             cEEEEEEee-----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-cee-eeceeeeeeecCCcEEEEEEEEEEeec
Q psy7748          74 ANVLMQMRF-----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKV-KDSDLVCIHYSQSKKIILHFYALQVEK  146 (232)
Q Consensus        74 ~~vLl~~R~-----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (232)
                      +++|+++|.     +|.|+||||+++.||++.+||.||++||||+.+. ... ....+.    ........++|.+....
T Consensus        17 ~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~----~~~~~~~i~~y~~~~~~   92 (312)
T PRK08999         17 GRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPLITVRHD----YPDKRVRLDVRRVTAWQ   92 (312)
T ss_pred             CeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeEEEEEEE----cCCCeEEEEEEEEEEec
Confidence            357777772     4799999999999999999999999999999976 332 222222    12234556667665433


Q ss_pred             CcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         147 TDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      +.+.            +.|..++.|++++++.+.
T Consensus        93 ~~~~------------~~e~~~~~Wv~~~el~~~  114 (312)
T PRK08999         93 GEPH------------GREGQPLAWVAPDELAVY  114 (312)
T ss_pred             Cccc------------CccCCccEEecHHHcccC
Confidence            3211            125567899999998874

>KOG2839|consensus

Probab=99.26  E-value=2.1e-11  Score=90.62  Aligned_cols=118  Identities=18%  Similarity=0.072  Sum_probs=73.3

Q ss_pred             CCccceEEEEEEecCCceEEEEeccCcEEEEEEe--eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeecee
Q psy7748          48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMR--FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDL  124 (232)
Q Consensus        48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R--~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~  124 (232)
                      .+++..++|+++..+...        .+||+..-  ++..|-+|+|++|++|+..+||.||+.||.|+... ..+...++
T Consensus         6 ~G~r~vagCi~~r~~~~~--------ieVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~~   77 (145)
T KOG2839|consen    6 AGFRLVAGCICYRSDKEK--------IEVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLGGFE   77 (145)
T ss_pred             CCcEEEEEeeeeeecCcc--------eEEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeeccccchh
Confidence            456778888988877542        24555544  34689999999999999999999999999999987 44333333


Q ss_pred             eeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         125 VCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      .+.........-.+.|...... .+..       +.+-..+.-+..|+.+++..+.+
T Consensus        78 ~~~~~~~~~~~k~~~~~l~v~e-~le~-------wp~~~~~~r~r~W~~ledA~~~~  126 (145)
T KOG2839|consen   78 DFLSKKHRTKPKGVMYVLAVTE-ELED-------WPESEHEFREREWLKLEDAIELC  126 (145)
T ss_pred             hccChhhcccccceeehhhhhh-hccc-------ChhhhcccceeEEeeHHHHHHHH
Confidence            2222211111112222222211 1110       11112357789999999888765

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]

Probab=99.20  E-value=3.4e-10  Score=85.24  Aligned_cols=43  Identities=47%  Similarity=0.641  Sum_probs=36.5

Q ss_pred             cEEEEEEe-eCC-eeecceeecCCCCCHHH-HHhHHHHHhhCCCCc
Q psy7748          74 ANVLMQMR-FDG-YIGFPGGLVDAGESPLE-ALNRELNEEINLNPK  116 (232)
Q Consensus        74 ~~vLl~~R-~~g-~w~lPgG~ve~gEs~~~-aa~REl~EEtGl~~~  116 (232)
                      ..+++.+| ..+ .|.||||++++||++.+ ||+||++||||+.+.
T Consensus        24 ~~vl~~~~~~~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~   69 (161)
T COG0494          24 GEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVK   69 (161)
T ss_pred             CEEeEEEccccCCceecCCcccCCCCchHHHHHHHHHHHHhCCeee
Confidence            35666666 444 99999999999998888 999999999999876

>KOG3084|consensus

Probab=99.19  E-value=1.6e-12  Score=107.98  Aligned_cols=86  Identities=16%  Similarity=0.112  Sum_probs=53.8

Q ss_pred             CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcccccccccccccC
Q psy7748          83 DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHD  161 (232)
Q Consensus        83 ~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (232)
                      +|.|..++|.+|+|||+++||+||++||||+++. +.+.    .+..........++.+.+-.....        ....+
T Consensus       212 ~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~----asQPWP~~p~SLMIgc~ala~~~~--------~I~vd  279 (345)
T KOG3084|consen  212 PGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYV----ASQPWPLMPQSLMIGCLALAKLNG--------KISVD  279 (345)
T ss_pred             CchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeee----ecCCCCCCchHHHHHHHHHHhhCC--------ccccC
Confidence            4899999999999999999999999999999998 4321    111111011222222222111111        11122


Q ss_pred             CCccceeeEeeeCcccccc
Q psy7748         162 YGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       162 ~~~E~~~~~wvpl~el~~~  180 (232)
                      .+.|..+++|++-.++.+.
T Consensus       280 ~dlEleDaqwF~r~ev~~a  298 (345)
T KOG3084|consen  280 KDLELEDAQWFDREEVKSA  298 (345)
T ss_pred             cchhhhhcccccHHHHHHH
Confidence            2347888999998887764

>KOG3069|consensus

Probab=99.13  E-value=2.5e-10  Score=91.48  Aligned_cols=97  Identities=25%  Similarity=0.243  Sum_probs=60.7

Q ss_pred             CcEEEEEEe------eCCeeecceeecCCCC-CHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEe
Q psy7748          73 RANVLMQMR------FDGYIGFPGGLVDAGE-SPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQV  144 (232)
Q Consensus        73 ~~~vLl~~R------~~g~w~lPgG~ve~gE-s~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (232)
                      +..||+++|      ++|...||||+.|+.+ +-..||.||..||+|++.. ..+++..-...........-+..|....
T Consensus        57 ~l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r~~~~v~p~v~~l~~~  136 (246)
T KOG3069|consen   57 ELSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLRSGWSVFPVVGFLSDK  136 (246)
T ss_pred             ceEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhccceeeccCcccceeEEEEecc
Confidence            357889988      5689999999999987 7889999999999999986 4333332222111111111111111111


Q ss_pred             ec-CcccccccccccccCCCccceeeEeeeCccccc
Q psy7748         145 EK-TDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGD  179 (232)
Q Consensus       145 ~~-~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~  179 (232)
                      .. ..+....          +|+..++|+|++++..
T Consensus       137 ~~l~~~~ln~----------gEv~~~F~VPL~~ll~  162 (246)
T KOG3069|consen  137 KILPSLRLNS----------GEVESAFWVPLTDLLL  162 (246)
T ss_pred             cccccccCCc----------hheeeeeeeeHHHHhh
Confidence            00 1122222          5899999999998765

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]

Probab=98.92  E-value=2.4e-09  Score=82.07  Aligned_cols=125  Identities=18%  Similarity=0.160  Sum_probs=88.0

Q ss_pred             ccceEEEEEEecCCceEEEEeccCcEEEEEEe------eCCee-ecceeecCCCCCHHHHHhHHHHHhhCCCCc-ce---
Q psy7748          50 GYHASHCMIFAYNDDKIFATYTARANVLMQMR------FDGYI-GFPGGLVDAGESPLEALNRELNEEINLNPK-YK---  118 (232)
Q Consensus        50 ~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R------~~g~w-~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~---  118 (232)
                      +++|.+++||+.+           +++|+++|      ++|.| .-..||--+||+..+|++|-+.+|.|+++. ..   
T Consensus        32 LHrAFS~~lFne~-----------g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~  100 (185)
T COG1443          32 LHRAFSSFLFNER-----------GQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLE  100 (185)
T ss_pred             HHhhhheeEECCC-----------CceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccc
Confidence            6789999999987           56788888      56777 456788889999999999999999999987 32   


Q ss_pred             eee-ceeeeeeecC-CcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccccCCchHHHHHHHHHHH
Q psy7748         119 VKD-SDLVCIHYSQ-SKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGLPCFLTHSFIGNA  196 (232)
Q Consensus       119 ~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~~~~~l~~~~i~~~  196 (232)
                      ++. ..|.....++ ..+.++.++.+.+.. .+.+..          +|+.+++|++++++.+++...+..+...+....
T Consensus       101 il~rf~YrA~~~~~~~E~Eic~V~~~~~~~-~~~~np----------dEV~~~~wv~~e~l~~~~~~~~~~fsPW~~~~~  169 (185)
T COG1443         101 ILPRFRYRAADPDGIVENEICPVLAARLDS-ALDPNP----------DEVMDYRWVSPEDLKEMVDATPWAFSPWFVIQA  169 (185)
T ss_pred             cccceEEeccCCCCcceeeeeeEEEEeecC-CCCCCh----------HHhhheeccCHHHHHHhhcCCceeeChHHHHHh
Confidence            221 1222221111 236666666766654 333332          599999999999999998666555555555433

>PLN02839 nudix hydrolase

Probab=98.79  E-value=1.3e-08  Score=87.51  Aligned_cols=127  Identities=20%  Similarity=0.228  Sum_probs=80.0

Q ss_pred             CcEEEEEEe------eCCee-ecceeecCCCCCHHHHHhHHHHHhhCCCCc-c----eeeeceeeeeeecCCcEEEEEEE
Q psy7748          73 RANVLMQMR------FDGYI-GFPGGLVDAGESPLEALNRELNEEINLNPK-Y----KVKDSDLVCIHYSQSKKIILHFY  140 (232)
Q Consensus        73 ~~~vLl~~R------~~g~w-~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~----~~~~~~~~~~~~~~~~~~~~~~~  140 (232)
                      +..+-+++|      ++|+| .+.||++..||++.+|++||+.||.|+... .    ......|...........+.++|
T Consensus       217 ~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g~~~evly~Y  296 (372)
T PLN02839        217 QKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYCFKRDVLFCY  296 (372)
T ss_pred             CeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCccccCEEEEe
Confidence            356888888      56888 778999999999999999999999999854 1    12222222111111223344456


Q ss_pred             EEEeecCcccccccccccccCCCccceeeEeeeCcccccccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Q psy7748         141 ALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGLPCFLTHSFIGNAKHQLLAALLKLKILSPE  213 (232)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~~~~~l~~~~i~~~~~~l~~~l~~~~~~~~~  213 (232)
                      ...++.+..+..         .++|+.++..++++++.+.+....     .|-.+.-.-++.-|...|+|.++
T Consensus       297 DLeLP~df~P~~---------qDGEVe~F~Lm~v~EV~~~l~~~~-----~fKpn~aLViiDFLiRhG~Itpe  355 (372)
T PLN02839        297 DLELPQDFVPKN---------QDGEVESFKLIPVAQVANVIRKTS-----FFKANCSLVIIDFLFRHGFIRPE  355 (372)
T ss_pred             eeecCCccccCC---------CccceeEEEEecHHHHHHHHHcCC-----CCCcccHHHHHHHHHHcCCCCCC
Confidence            666554322111         136999999999999987652211     13333444455666677777654

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]

Probab=98.77  E-value=1.6e-08  Score=73.49  Aligned_cols=58  Identities=26%  Similarity=0.390  Sum_probs=47.2

Q ss_pred             cceEEEEEEecCCceEEEEeccCcEEEEEEe--------eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc
Q psy7748          51 YHASHCMIFAYNDDKIFATYTARANVLMQMR--------FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK  116 (232)
Q Consensus        51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R--------~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~  116 (232)
                      +.++++++++...++|        .||+.+-        ..|-|++|.|....||.+..||+||..||+|+.++
T Consensus         3 K~SAGvLlYR~~aG~v--------~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vd   68 (161)
T COG4119           3 KLSAGVLLYRARAGVV--------DVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVD   68 (161)
T ss_pred             cccceeEEEEecCCCE--------EEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeec
Confidence            3567888888766655        3455544        23789999999999999999999999999999987

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone

Probab=98.71  E-value=1.6e-07  Score=68.53  Aligned_cols=87  Identities=22%  Similarity=0.307  Sum_probs=59.3

Q ss_pred             cEEEEEEe-----eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCcceeeeceeeeeeecCCcEEEEEEEEEEeecCc
Q psy7748          74 ANVLMQMR-----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQSKKIILHFYALQVEKTD  148 (232)
Q Consensus        74 ~~vLl~~R-----~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (232)
                      +.+|+++|     ++|+|+||+|.++.+++.+++..|++.+|.++... .+....+.+++.    +...++|.+....+.
T Consensus        14 ~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~H~fth~----~~~~~~~~~~~~~~~   88 (118)
T cd03431          14 GRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRLSLE-PLGTVKHTFTHF----RLTLHVYLARLEGDL   88 (118)
T ss_pred             CeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCcccc-cceeEEEecCCe----EEEEEEEEEEEeCCC
Confidence            46788888     45899999999999999999999999998764111 112223333332    566777777664321


Q ss_pred             ccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         149 VLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       149 ~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                                     .+..+..|++++++...
T Consensus        89 ---------------~~~~~~~W~~~eel~~~  105 (118)
T cd03431          89 ---------------LAPDEGRWVPLEELDEY  105 (118)
T ss_pred             ---------------cCccccEEccHHHHhhC
Confidence                           02346789999888874

It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to

>KOG0648|consensus

Probab=98.66  E-value=1.7e-08  Score=84.18  Aligned_cols=115  Identities=14%  Similarity=0.128  Sum_probs=72.6

Q ss_pred             CCccceEEEEEEecCCceEEEEeccCcEEEEEEe-----eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeee
Q psy7748          48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMR-----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKD  121 (232)
Q Consensus        48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R-----~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~  121 (232)
                      ..++..+++++++....+          ++++.+     .+|.|-+|+|.|+++|++.++|+||++||||++.. ..++.
T Consensus       112 Ash~vgvg~~V~n~~~eV----------lVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~eVla  181 (295)
T KOG0648|consen  112 ASHRVGVGAFVLNKKKEV----------LVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFVEVLA  181 (295)
T ss_pred             hhhheeeeeeEecCCcee----------EEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhhhhHHH
Confidence            445666777777766222          233322     45899999999999999999999999999999766 33222


Q ss_pred             ceeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         122 SDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      ......... ......+|+.|.+.+-.+...        .-..|+..+.|+|+.+.....
T Consensus       182 ~r~~H~~~~-~~~ksd~f~~c~L~p~s~~i~--------~~~~ei~~~~Wmp~~e~v~qp  232 (295)
T KOG0648|consen  182 FRRAHNATF-GLIKSDMFFTCELRPRSLDIT--------KCKREIEAAAWMPIEEYVSQP  232 (295)
T ss_pred             HHhhhcchh-hcccccceeEEEeeccccccc--------hhHHHHHHHhcccHHHhhccc
Confidence            111111110 112455777777754222111        112578888999999877654

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A

Probab=97.97  E-value=5.4e-05  Score=55.18  Aligned_cols=90  Identities=23%  Similarity=0.296  Sum_probs=52.0

Q ss_pred             cCcEEEEEEe-----eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-c-eeeeceeeeeeecCCcEEEEEEEEEEe
Q psy7748          72 ARANVLMQMR-----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-Y-KVKDSDLVCIHYSQSKKIILHFYALQV  144 (232)
Q Consensus        72 ~~~~vLl~~R-----~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (232)
                      .++.+|+++|     ..|.|+||.--++. ++..+++.+.+.+..|+.+. . .+....+.+++    .....++|.+.+
T Consensus         7 ~~~~~Ll~kRp~~gll~GLwefP~~e~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~v~H~fSH----~~~~~~~~~~~~   81 (114)
T PF14815_consen    7 SQGRVLLEKRPEKGLLAGLWEFPLIESDE-EDDEEELEEWLEEQLGLSIRSVEPLGTVKHVFSH----RRWTIHVYEVEV   81 (114)
T ss_dssp             TTSEEEEEE--SSSTTTT-EE--EEE-SS-S-CHHHHHHHTCCSSS-EEEE-S-SEEEEEE-SS----EEEEEEEEEEEE
T ss_pred             eCCEEEEEECCCCChhhcCcccCEeCccC-CCCHHHHHHHHHHHcCCChhhheecCcEEEEccc----eEEEEEEEEEEe
Confidence            3467899999     34899999988874 43456566677778888765 2 23333344433    367778888887


Q ss_pred             ecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         145 EKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      ......              +..+..|++++++.+.
T Consensus        82 ~~~~~~--------------~~~~~~W~~~~~l~~~  103 (114)
T PF14815_consen   82 SADPPA--------------EPEEGQWVSLEELDQY  103 (114)
T ss_dssp             E-SS------------------TTEEEEEGGGGGGS
T ss_pred             cCCCCC--------------CCCCcEEEEHHHHhhC
Confidence            754321              2447899999999873

>KOG4195|consensus

Probab=97.76  E-value=3e-05  Score=61.81  Aligned_cols=38  Identities=39%  Similarity=0.598  Sum_probs=33.3

Q ss_pred             cEEEEEEeeC-CeeecceeecCCCCCHHHHHhHHHHHhh
Q psy7748          74 ANVLMQMRFD-GYIGFPGGLVDAGESPLEALNRELNEEI  111 (232)
Q Consensus        74 ~~vLl~~R~~-g~w~lPgG~ve~gEs~~~aa~REl~EEt  111 (232)
                      .+++..+|.. |.|.+|||.+++||.+-.+++||+.||.
T Consensus       139 le~vavkr~d~~~WAiPGGmvdpGE~vs~tLkRef~eEa  177 (275)
T KOG4195|consen  139 LEFVAVKRPDNGEWAIPGGMVDPGEKVSATLKREFGEEA  177 (275)
T ss_pred             eEEEEEecCCCCcccCCCCcCCchhhhhHHHHHHHHHHH
Confidence            3566677755 8999999999999999999999999996

>KOG0142|consensus

Probab=97.72  E-value=5e-05  Score=59.81  Aligned_cols=132  Identities=19%  Similarity=0.128  Sum_probs=79.0

Q ss_pred             CCccceEEEEEEecCCceEEEEeccCcEEEEEEeeCCeeecce--------------eecCCC--CCHHHHHhHHHHHhh
Q psy7748          48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPG--------------GLVDAG--ESPLEALNRELNEEI  111 (232)
Q Consensus        48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~g~w~lPg--------------G~ve~g--Es~~~aa~REl~EEt  111 (232)
                      +-.++|.++++++..           +.+|+|+|..-...||+              |..+..  .....||+|-|+-|.
T Consensus        49 glLHRaFSVFlFns~-----------~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~EL  117 (225)
T KOG0142|consen   49 GLLHRAFSVFLFNSK-----------NELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAEL  117 (225)
T ss_pred             hhhhheeeEEEecCc-----------chHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhh
Confidence            456789999999976           56899999554444443              222222  257899999999999


Q ss_pred             CCCCc-c-----eeeec-eeeeeeecC-CcEEEEEEEEEEeecC-cccccccccccccCCCccceeeEeeeCcccccccC
Q psy7748         112 NLNPK-Y-----KVKDS-DLVCIHYSQ-SKKIILHFYALQVEKT-DVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFR  182 (232)
Q Consensus       112 Gl~~~-~-----~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~  182 (232)
                      |+... +     ..++. .|....... +.|.+.  |..-+..+ .+.+.          .+|+.++.|++.+++.+++.
T Consensus       118 GIp~e~v~pee~~~ltrihYkA~sdg~wGEhEiD--YiL~~~~~~~~nPn----------pnEv~e~ryvs~eelkel~~  185 (225)
T KOG0142|consen  118 GIPLEEVPPEEFNFLTRIHYKAPSDGIWGEHEID--YILFLVKDVTLNPN----------PNEVSEIRYVSREELKELVA  185 (225)
T ss_pred             CCCccccCHHHcccceeeeeecCCCCCcccceee--EEEEEeccCCCCCC----------hhhhhHhheecHHHHHHHHh
Confidence            99875 2     22222 222221111 223332  22222221 12221          25899999999999999976


Q ss_pred             CchHHHHHHHHHHHHHHHHH
Q psy7748         183 GLPCFLTHSFIGNAKHQLLA  202 (232)
Q Consensus       183 ~~~~~l~~~~i~~~~~~l~~  202 (232)
                      ..+.-++.+|--.+...++.
T Consensus       186 ~~~~~~TPWfkli~~~~l~~  205 (225)
T KOG0142|consen  186 KASAGFTPWFKLISENFLFK  205 (225)
T ss_pred             ccccCCChHHHHHHHHHHHH
Confidence            66555555665555555544

>KOG4432|consensus

Probab=97.64  E-value=0.00041  Score=57.94  Aligned_cols=149  Identities=16%  Similarity=0.155  Sum_probs=87.2

Q ss_pred             CCccCccccccccCCcccccccCCccceEEEEEEecCCceEEEEeccCcEEEE---EEeeC------------------C
Q psy7748          26 RPSTNLNDFIELTQSDLKDDKYKSGYHASHCMIFAYNDDKIFATYTARANVLM---QMRFD------------------G   84 (232)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl---~~R~~------------------g   84 (232)
                      .|.++..+-+=.-+|-...+.....+.++.+++++.....+..+..-+.-|..   .++.+                  |
T Consensus       204 spy~~P~rl~y~qNGi~knWDl~k~hdSvt~iL~n~srk~LVlvqqfRpaVy~G~~~~~~~g~~~~vDe~~~~e~~Paig  283 (405)
T KOG4432|consen  204 SPYYNPKRLIYTQNGITKNWDLAKCHDSVTCILVNMSRKELVLVQQFRPAVYVGKNRFLKEGIGKPVDEIDFSESDPAIG  283 (405)
T ss_pred             CCCcCceEEEEEecCcccccchhhCCCceEEEEEeccchheehhhhcCcceeecceeecccCCCCcccccccccCCccce
Confidence            45554442222235556777777778888899988765544322211111111   01000                  1


Q ss_pred             -eeecceeecCCCCCHHHHHhHHHHHhhCCCCc---ceeeeceeeeeeecCCcEEEEEEEEEEeecCccccccccccccc
Q psy7748          85 -YIGFPGGLVDAGESPLEALNRELNEEINLNPK---YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSH  160 (232)
Q Consensus        85 -~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (232)
                       +.+|.+|.|+..-|..+-|.||..||+|++..   +..........+.++..+   ..|.+++.......    +....
T Consensus       284 vTlELcag~Vd~p~s~~e~a~~e~veecGYdlp~~~~k~va~y~sGVG~SG~~Q---Tmfy~eVTdA~rsg----pGgg~  356 (405)
T KOG4432|consen  284 VTLELCAGRVDDPFSDPEKAARESVEECGYDLPEDSFKLVAKYISGVGQSGDTQ---TMFYVEVTDARRSG----PGGGE  356 (405)
T ss_pred             eeeeeecccCCCCcccHHHHHHHHHHHhCCCCCHHHHhhhheeecccCCcCCee---EEEEEEeehhhccC----CCCCc
Confidence             67888999998888888899999999999987   344444444333333222   23444444332211    11122


Q ss_pred             CCCccceeeEeeeCccccccc
Q psy7748         161 DYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       161 ~~~~E~~~~~wvpl~el~~~i  181 (232)
                      ++.+|.+++..+|+++++.+.
T Consensus       357 ~ee~E~IEvv~lsle~a~~~~  377 (405)
T KOG4432|consen  357 KEEDEDIEVVRLSLEDAPSLY  377 (405)
T ss_pred             ccccceeeEEEechhhhhHHH
Confidence            333599999999999999874

>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A

Probab=97.04  E-value=0.012  Score=46.40  Aligned_cols=114  Identities=18%  Similarity=0.298  Sum_probs=65.4

Q ss_pred             CCccceEEEEEEecCCceEEEEeccCcEEEEEEeeCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc----ce---ee
Q psy7748          48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK----YK---VK  120 (232)
Q Consensus        48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~----~~---~~  120 (232)
                      .+.|++|.+|++....+.        .+||+-+.....+-||||.+.+||+..++.+|.|.+-.|....    +.   .+
T Consensus        40 ~GmRrsVe~Vllvh~h~~--------PHvLLLq~~~~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~~~~~~~w~vge~l  111 (188)
T PF13869_consen   40 EGMRRSVEGVLLVHEHGH--------PHVLLLQIGNTFFKLPGGRLRPGEDEIEGLKRKLTEKLSPEDGVDPDWEVGECL  111 (188)
T ss_dssp             HSSEEEEEEEEEEEETTE--------EEEEEEEETTTEEE-SEEE--TT--HHHHHHHHHHHHHB-SSSS----EEEEEE
T ss_pred             hCCceEEEEEEEEecCCC--------cEEEEEeccCccccCCccEeCCCCChhHHHHHHHHHHcCCCcCCCCCcEecCEE
Confidence            567888877776654433        3566655666699999999999999999999999999998742    22   33


Q ss_pred             eceeeeeeecC----------CcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         121 DSDLVCIHYSQ----------SKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       121 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      +.++...+...          ....+.-.|.+.+.....-..           .....+.-+|+=++-+.
T Consensus       112 ~~WwRp~Fe~~~YPYlP~HitkPKE~~klylV~Lpe~~~F~V-----------Pkn~kL~AvPLFeLydN  170 (188)
T PF13869_consen  112 GTWWRPNFEPFMYPYLPPHITKPKECIKLYLVQLPEKCLFAV-----------PKNMKLVAVPLFELYDN  170 (188)
T ss_dssp             EEEEESSSSS--BSS--TT-SS-SEEEEEEEEE--SSEEEEE-----------ETTSEEEEEEHHHHTTT
T ss_pred             EEEeCCCCCCCCCCCCCcccCChhheeEEEEEecCCCceEec-----------CCCCeEEeecHhhhhcC
Confidence            44443222110          234556666766654322111           13567777888777764

...

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]

Probab=96.47  E-value=0.023  Score=43.47  Aligned_cols=94  Identities=20%  Similarity=0.201  Sum_probs=53.6

Q ss_pred             EEEEEEee--------CCeeec-ceeecCCCC---CHHHH----HhHHHHHhhCCCCc----ceeeeceeeeeeecCCcE
Q psy7748          75 NVLMQMRF--------DGYIGF-PGGLVDAGE---SPLEA----LNRELNEEINLNPK----YKVKDSDLVCIHYSQSKK  134 (232)
Q Consensus        75 ~vLl~~R~--------~g~w~l-PgG~ve~gE---s~~~a----a~REl~EEtGl~~~----~~~~~~~~~~~~~~~~~~  134 (232)
                      .||+-.|-        .+.+++ .|||+..++   |..+.    +.|||.||.++.-.    +..++.........+. -
T Consensus        73 evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlINdd~neVgk-V  151 (203)
T COG4112          73 EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLINDDTNEVGK-V  151 (203)
T ss_pred             EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeeecCCCcccce-E
Confidence            56777772        246666 699999876   33333    56999999999843    3333332222221111 2


Q ss_pred             EEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccc
Q psy7748         135 IILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGD  179 (232)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~  179 (232)
                      .+..+|.......+...-+          .+.++..|+.+.++..
T Consensus       152 HiG~lf~~~~k~ndvevKE----------kd~~~~kwik~~ele~  186 (203)
T COG4112         152 HIGALFLGRGKFNDVEVKE----------KDLFEWKWIKLEELEK  186 (203)
T ss_pred             EEEEEEEeeccccceeeee----------cceeeeeeeeHHHHHH
Confidence            2333444444332222212          3678999999988876

>KOG2937|consensus

Probab=96.14  E-value=0.0036  Score=53.17  Aligned_cols=42  Identities=24%  Similarity=0.366  Sum_probs=35.2

Q ss_pred             EEEEEEee-CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc
Q psy7748          75 NVLMQMRF-DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK  116 (232)
Q Consensus        75 ~vLl~~R~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~  116 (232)
                      .+|+.+.+ ...|.+|-|++..+|+-.+||.||+.||||.+..
T Consensus        96 r~llv~g~qa~sw~fprgK~~kdesd~~caiReV~eetgfD~s  138 (348)
T KOG2937|consen   96 RCLLVKGWQASSWSFPRGKISKDESDSDCAIREVTEETGFDYS  138 (348)
T ss_pred             hhheeeceecccccccCccccccchhhhcchhcccchhhcCHH
Confidence            34444443 3469999999999999999999999999999987

>KOG4432|consensus

Probab=95.85  E-value=0.014  Score=49.05  Aligned_cols=61  Identities=20%  Similarity=0.239  Sum_probs=41.0

Q ss_pred             eeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeec
Q psy7748          85 YIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEK  146 (232)
Q Consensus        85 ~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (232)
                      +.+|.||.|+..-||.+-|..|+.||+|+.+. ..+....-...+.+ .....++.|.|++..
T Consensus        80 tielc~g~idke~s~~eia~eev~eecgy~v~~d~l~hv~~~~~g~~-~s~sa~~l~y~ei~e  141 (405)
T KOG4432|consen   80 TIELCAGLIDKELSPREIASEEVAEECGYRVDPDDLIHVITFVVGAH-QSGSAQHLYYAEIDE  141 (405)
T ss_pred             eeeeeccccccccCHHHHhHHHHHHHhCCcCChhHceEEEEEEeccc-cCccchheeeeecch
Confidence            57899999999999999999999999999998 33322222222222 222344555665543

>KOG1689|consensus

Probab=95.32  E-value=0.13  Score=39.72  Aligned_cols=58  Identities=19%  Similarity=0.336  Sum_probs=41.0

Q ss_pred             CCccceEEEEEEecCCceEEEEeccCcEEEEEEeeCCeeecceeecCCCCCHHHHHhHHHHHhhCC
Q psy7748          48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINL  113 (232)
Q Consensus        48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl  113 (232)
                      .+.|+++-.+++.....        -.++|+.+-..-++-+|||.+++||+-.+.++|-+-|-.|-
T Consensus        66 ~gmRrsvegvlivheH~--------lPHvLLLQig~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lgr  123 (221)
T KOG1689|consen   66 EGMRRSVEGVLIVHEHN--------LPHVLLLQIGNTFFKLPGGRLRPGEDEADGLKRLLTESLGR  123 (221)
T ss_pred             hhhhheeeeeEEEeecC--------CCeEEEEeeCCEEEecCCCccCCCcchhHHHHHHHHHHhcc
Confidence            44566665555443321        13445444445578999999999999999999999999993

>KOG4313|consensus

Probab=94.96  E-value=0.049  Score=44.62  Aligned_cols=97  Identities=14%  Similarity=0.052  Sum_probs=58.3

Q ss_pred             cEEEEEEe------eCCee-ecceeecCCCCCHHHHHhHHHHHhhCCCCc--cee---eeceee-eeeecCCcEEEEEEE
Q psy7748          74 ANVLMQMR------FDGYI-GFPGGLVDAGESPLEALNRELNEEINLNPK--YKV---KDSDLV-CIHYSQSKKIILHFY  140 (232)
Q Consensus        74 ~~vLl~~R------~~g~w-~lPgG~ve~gEs~~~aa~REl~EEtGl~~~--~~~---~~~~~~-~~~~~~~~~~~~~~~  140 (232)
                      .++-+++|      ++|+| ...||++-.|-.+.++|+.|..||..++..  ..+   ..+.|. +.....-.....++|
T Consensus       148 l~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~esr~~~~pe~qYVf  227 (306)
T KOG4313|consen  148 LCIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFESRQGLFPETQYVF  227 (306)
T ss_pred             eEEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEEEeeehhhccCccceEEE
Confidence            45667777      55777 778999999999999999999999999874  111   111111 111111122444555


Q ss_pred             EEEeecCcccccccccccccCCCccceeeEeeeCccccc
Q psy7748         141 ALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGD  179 (232)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~  179 (232)
                      ...++..-.+..         .+.|+..+.-+++.+..+
T Consensus       228 DL~l~~d~iP~~---------nDGEV~~F~Lltl~~~v~  257 (306)
T KOG4313|consen  228 DLELPLDFIPQN---------NDGEVQAFELLTLKDCVE  257 (306)
T ss_pred             eccCchhhcCCC---------CCCceeeEeeecHHHHHH
Confidence            555554332222         135777777777655443

>PRK10880 adenine DNA glycosylase; Provisional

Probab=90.71  E-value=2  Score=37.73  Aligned_cols=35  Identities=20%  Similarity=0.276  Sum_probs=22.2

Q ss_pred             cEEEEEEe-----eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCC
Q psy7748          74 ANVLMQMR-----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNP  115 (232)
Q Consensus        74 ~~vLl~~R-----~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~  115 (232)
                      +.+++++|     +.|.|+||..  +.    .+ ..++..|+.|+..
T Consensus       242 ~~~~l~~r~~~gl~~gl~~fP~~--~~----~~-~~~~~~~~~~~~~  281 (350)
T PRK10880        242 DEVWLEQRPPSGLWGGLFCFPQF--AD----EE-ELRQWLAQRGIAA  281 (350)
T ss_pred             CEEEEEECCccChhhccccCCCC--cc----hh-hHHHHHHhcCCch
Confidence            46788888     3489999963  21    11 2355567778753

>KOG4548|consensus

Probab=88.46  E-value=2.1  Score=35.38  Aligned_cols=96  Identities=14%  Similarity=0.116  Sum_probs=57.1

Q ss_pred             EEEEEEe-eC--Ceeecceeec-CCCCCHHHHHhHHHHHhhCCCCc-ceeeecee-----eeeeecC---CcEEEEEEEE
Q psy7748          75 NVLMQMR-FD--GYIGFPGGLV-DAGESPLEALNRELNEEINLNPK-YKVKDSDL-----VCIHYSQ---SKKIILHFYA  141 (232)
Q Consensus        75 ~vLl~~R-~~--g~w~lPgG~v-e~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~-----~~~~~~~---~~~~~~~~~~  141 (232)
                      .+|+.+| .+  +.|.||-+.. +.++++..+|.|+|+.-.|=... +.......     .++....   ......++|.
T Consensus       140 LyLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~e~~~~sk~ff~k  219 (263)
T KOG4548|consen  140 LYLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTTEEPVSSKVFFFK  219 (263)
T ss_pred             EEEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCcccccccccccceeEEee
Confidence            3445444 23  6899999999 99999999999999998887654 22111111     1110000   0123345566


Q ss_pred             EEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         142 LQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      +.+..+......           -.-+..|++-+++.+-+
T Consensus       220 ~~lv~~~~~kn~-----------n~edfvWvTkdel~e~l  248 (263)
T KOG4548|consen  220 ASLVANSNQKNQ-----------NKEDFVWVTKDELGEKL  248 (263)
T ss_pred             eeeccccchhcc-----------cccceEEechHHHhhhc
Confidence            655544322211           23358999999998855

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	232
3mgm_A	200	Crystal Structure Of Human Nudt16 Length = 200		5e-26
3cou_A	217	Crystal Structure Of Human Nudix Motif 16 (Nudt16)		2e-25
3kvh_A	214	Crystal Structure Of Human Protein Syndesmos (Nudt1		9e-21
2a8r_A	212	2.45 Angstrom Crystal Structure Of The Complex Betw		5e-18
2a8p_A	212	2.7 Angstrom Crystal Structure Of The Complex Betwe		5e-18
1u20_A	212	Crystal Structure Of Xenopus Laevis Nudix Hydrolase		5e-18

>pdb|3MGM|A Chain A, Crystal Structure Of Human Nudt16 Length = 200

Iteration: 1
 Score =  114 bits (284), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 56/146 (38%), Positives = 82/146 (56%), Gaps = 2/146 (1%)
Query: 52  HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPXX--XXXXXXXX 109
           HA H +++A +   +F     R  +LMQMRFDG +GFPGG VD  +              
Sbjct: 22  HACHALLYAPDPGMLFGRIPLRYAILMQMRFDGRLGFPGGFVDTQDRSLEDGLNRELREE 81
Query: 110 XXXXXPKYKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGT 169
                  ++V+ +D    H     +++ HFYA ++   ++L +E GA  + D+G+EVLG 
Sbjct: 82  LGEAAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLTLEELLAVEAGATRAKDHGLEVLGL 141
Query: 170 VRVPLYTMGDGFRGLPCFLTHSFIGN 195
           VRVPLYT+ DG  GLP FL +SFIG+
Sbjct: 142 VRVPLYTLRDGVGGLPTFLENSFIGS 167

>pdb|3COU|A Chain A, Crystal Structure Of Human Nudix Motif 16 (Nudt16) Length = 217

Iteration: 1
 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/146 (37%), Positives = 81/146 (55%), Gaps = 2/146 (1%)
Query: 52  HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPXX--XXXXXXXX 109
           H  H +++A +   +F     R  +LMQMRFDG +GFPGG VD  +              
Sbjct: 43  HVCHALLYAPDPGMLFGRIPLRYAILMQMRFDGRLGFPGGFVDTQDRSLEDGLNRELREE 102
Query: 110 XXXXXPKYKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGT 169
                  ++V+ +D    H     +++ HFYA ++   ++L +E GA  + D+G+EVLG 
Sbjct: 103 LGEAAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLTLEELLAVEAGATRAKDHGLEVLGL 162
Query: 170 VRVPLYTMGDGFRGLPCFLTHSFIGN 195
           VRVPLYT+ DG  GLP FL +SFIG+
Sbjct: 163 VRVPLYTLRDGVGGLPTFLENSFIGS 188

>pdb|3KVH|A Chain A, Crystal Structure Of Human Protein Syndesmos (Nudt16-Like Protein) Length = 214

Iteration: 1
 Score = 96.7 bits (239), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 3/171 (1%)
Query: 52  HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPXXXXXXXXXXXX 111
           H+ H M++A N  ++F     R +VLMQMRFDG +GFPGG VD                 
Sbjct: 22  HSCHAMLYAANPGQLFGRIPMRFSVLMQMRFDGLLGFPGGFVD--RRFWSLEDGLNRVLG 79
Query: 112 XXXPKYKVKDSDLVCIHYSQS-KKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTV 170
                 ++ ++D +  H ++   +++ H YA Q+    +  +E  A+ S D+G+EVLG V
Sbjct: 80  LGLGCLRLTEADYLSSHLTEGPHRVVAHLYARQLTLEQLHAVEISAVHSRDHGLEVLGLV 139
Query: 171 RVPLYTMGDGFRGLPCFLTHSFIGNXXXXXXXXXXXXXXXSPEEINQALNA 221
           RVPLYT  D   G P FL+++F+                   E++ +AL A
Sbjct: 140 RVPLYTQKDRVGGFPNFLSNAFVSTAKCQLLFALKVLNMMPEEKLVEALAA 190

>pdb|2A8R|A Chain A, 2.45 Angstrom Crystal Structure Of The Complex Between The Nuclear Snorna Decapping Nudix Hydrolase X29 And Manganese In The Presence Of 7-Methyl-Gtp Length = 212

Iteration: 1
 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 4/177 (2%)
Query: 49  SGY-HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPXXXXXXXX 107
            GY HA H ++ A +  K+F     R  +LM MRFDG +GFPGG VD  +          
Sbjct: 30  EGYKHACHALLHAPSQAKLFDRVPIRRVLLMMMRFDGRLGFPGGFVDTRDISLEEGLKRE 89
Query: 108 XXXXX--XXPKYKVKDSDLVCIHYSQ-SKKIILHFYALQVEKTDVLEIEKGALTSHDYGV 164
                       +V + D       +  +K + HFY  +++  ++  IE  A+ + D+G+
Sbjct: 90  LEEELGPALATVEVTEDDYRSSQVREHPQKXVTHFYIKELKLEEIERIEAEAVNAKDHGL 149
Query: 165 EVLGTVRVPLYTMGDGFRGLPCFLTHSFIGNXXXXXXXXXXXXXXXSPEEINQALNA 221
           EV+G +RVPLYT+ D   GLP FL ++FIGN                 ++I + L A
Sbjct: 150 EVMGLIRVPLYTLRDRVGGLPAFLXNNFIGNSKSQLLYALRSLKLLREDQIQEVLKA 206

>pdb|2A8P|A Chain A, 2.7 Angstrom Crystal Structure Of The Complex Between The Nuclear Snorna Decapping Nudix Hydrolase X29 And Manganese Length = 212

Iteration: 1
 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 4/177 (2%)
Query: 49  SGY-HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPXXXXXXXX 107
            GY HA H ++ A +  K+F     R  +LM MRFDG +GFPGG VD  +          
Sbjct: 30  EGYKHACHALLHAPSQAKLFDRVPIRRVLLMMMRFDGRLGFPGGFVDTRDISLEEGLKRE 89
Query: 108 XXXXX--XXPKYKVKDSDLVCIHYSQ-SKKIILHFYALQVEKTDVLEIEKGALTSHDYGV 164
                       +V + D       +  +K + HFY  +++  ++  IE  A+ + D+G+
Sbjct: 90  LEEELGPALATVEVTEDDYRSSQVREHPQKCVTHFYIKELKLEEIERIEAEAVNAKDHGL 149
Query: 165 EVLGTVRVPLYTMGDGFRGLPCFLTHSFIGNXXXXXXXXXXXXXXXSPEEINQALNA 221
           EV+G +RVPLYT+ D   GLP FL ++FIGN                 ++I + L A
Sbjct: 150 EVMGLIRVPLYTLRDRVGGLPAFLXNNFIGNSKSQLLYALRSLKLLREDQIQEVLKA 206

>pdb|1U20|A Chain A, Crystal Structure Of Xenopus Laevis Nudix Hydrolase Nuclear Snorna Decapping Protein X29 Length = 212

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 4/177 (2%)
Query: 49  SGY-HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPXXXXXXXX 107
            GY HA H ++ A +  K+F     R  +LM MRFDG +GFPGG VD  +          
Sbjct: 30  EGYKHACHALLHAPSQAKLFDRVPIRRVLLMMMRFDGRLGFPGGFVDTRDISLEEGLKRE 89
Query: 108 XXXXX--XXPKYKVKDSDLVCIHYSQ-SKKIILHFYALQVEKTDVLEIEKGALTSHDYGV 164
                       +V + D       +  +K + HFY  +++  ++  IE  A+ + D+G+
Sbjct: 90  LEEELGPALATVEVTEDDYRSSQVREHPQKCVTHFYIKELKLEEIERIEAEAVNAKDHGL 149
Query: 165 EVLGTVRVPLYTMGDGFRGLPCFLTHSFIGNXXXXXXXXXXXXXXXSPEEINQALNA 221
           EV+G +RVPLYT+ D   GLP FL ++FIGN                 ++I + L A
Sbjct: 150 EVMGLIRVPLYTLRDRVGGLPAFLCNNFIGNSKSQLLYALRSLKLLREDQIQEVLKA 206

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	232
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	9e-61
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	5e-56
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	6e-55
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	3e-10
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	3e-10
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	4e-10
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	4e-10
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	7e-10
3exq_A	161	Nudix family hydrolase; protein structure initiati	9e-10
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	1e-09
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	1e-09
3grn_A	153	MUTT related protein; structural genomics, hydrola	1e-09
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	1e-09
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	2e-09
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	2e-09
2b06_A	155	MUTT/nudix family protein; structural genomics, P	4e-09
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	2e-08
3f13_A	163	Putative nudix hydrolase family member; structural	3e-08
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	3e-08
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	3e-08
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	3e-08
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	3e-08
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	4e-08
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	6e-08
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	1e-07
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	2e-07
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	5e-07
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	7e-07
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	1e-06
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	1e-06
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	1e-06
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	1e-06
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	2e-06
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	2e-06
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	2e-06
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	3e-06
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	3e-06
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	4e-06
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	4e-06
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	5e-06
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	6e-06
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	7e-06
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	8e-06
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	8e-06
1xsa_A	153	BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme,	9e-06
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	9e-06
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	1e-05
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	1e-05
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	1e-05
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	1e-05
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	2e-05
2fb1_A	226	Conserved hypothetical protein; structural genomic	2e-05
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	3e-05
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	4e-05
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	6e-05
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	7e-05
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	7e-05
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	7e-05
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	1e-04
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	2e-04
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	5e-04
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	8e-04
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	8e-04

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens} Length = 214

 Score =  189 bits (480), Expect = 9e-61
 Identities = 70/178 (39%), Positives = 102/178 (57%), Gaps = 5/178 (2%)

Query: 52  HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLE-ALNRELNEE 110
           H+ H M++A N  ++F     R +VLMQMRFDG +GFPGG VD     LE  LNR L   
Sbjct: 22  HSCHAMLYAANPGQLFGRIPMRFSVLMQMRFDGLLGFPGGFVDRRFWSLEDGLNRVLGLG 81

Query: 111 INLNPKYKVKDSDLVCIHYSQSK-KIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGT 169
           +       + ++D +  H ++   +++ H YA Q+    +  +E  A+ S D+G+EVLG 
Sbjct: 82  LGCLR---LTEADYLSSHLTEGPHRVVAHLYARQLTLEQLHAVEISAVHSRDHGLEVLGL 138

Query: 170 VRVPLYTMGDGFRGLPCFLTHSFIGNAKHQLLAALLKLKILSPEEINQALNAKPVPVK 227
           VRVPLYT  D   G P FL+++F+  AK QLL AL  L ++  E++ +AL A     K
Sbjct: 139 VRVPLYTQKDRVGGFPNFLSNAFVSTAKCQLLFALKVLNMMPEEKLVEALAAATEKQK 196

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A* Length = 212

 Score =  176 bits (448), Expect = 5e-56
 Identities = 73/190 (38%), Positives = 107/190 (56%), Gaps = 4/190 (2%)

Query: 36  ELTQSDLKDDKYKSGY-HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVD 94
                  ++     GY HA H ++ A +  K+F     R  +LM MRFDG +GFPGG VD
Sbjct: 17  RPRNISREESLQLEGYKHACHALLHAPSQAKLFDRVPIRRVLLMMMRFDGRLGFPGGFVD 76

Query: 95  AGESPLE-ALNRELNEEINLNPK-YKVKDSDLVCIHYSQS-KKIILHFYALQVEKTDVLE 151
             +  LE  L REL EE+       +V + D       +  +K + HFY  +++  ++  
Sbjct: 77  TRDISLEEGLKRELEEELGPALATVEVTEDDYRSSQVREHPQKCVTHFYIKELKLEEIER 136

Query: 152 IEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGLPCFLTHSFIGNAKHQLLAALLKLKILS 211
           IE  A+ + D+G+EV+G +RVPLYT+ D   GLP FL ++FIGN+K QLL AL  LK+L 
Sbjct: 137 IEAEAVNAKDHGLEVMGLIRVPLYTLRDRVGGLPAFLCNNFIGNSKSQLLYALRSLKLLR 196

Query: 212 PEEINQALNA 221
            ++I + L A
Sbjct: 197 EDQIQEVLKA 206

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A Length = 217

 Score =  174 bits (442), Expect = 6e-55
 Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 2/168 (1%)

Query: 51  YHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLE-ALNRELNE 109
            H  H +++A +   +F     R  +LMQMRFDG +GFPGG VD  +  LE  LNREL E
Sbjct: 42  RHVCHALLYAPDPGMLFGRIPLRYAILMQMRFDGRLGFPGGFVDTQDRSLEDGLNRELRE 101

Query: 110 EINLN-PKYKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLG 168
           E+      ++V+ +D    H     +++ HFYA ++   ++L +E GA  + D+G+EVLG
Sbjct: 102 ELGEAAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLTLEELLAVEAGATRAKDHGLEVLG 161

Query: 169 TVRVPLYTMGDGFRGLPCFLTHSFIGNAKHQLLAALLKLKILSPEEIN 216
            VRVPLYT+ DG  GLP FL +SFIG+A+ QLL AL  L +L    I+
Sbjct: 162 LVRVPLYTLRDGVGGLPTFLENSFIGSAREQLLEALQDLGLLQSGSIS 209

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1 Length = 148

 Score = 55.9 bits (135), Expect = 3e-10
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 76  VLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEE----INLNPKYKVKDSDLVCIHYSQ 131
           +++    +G    PGG ++  E+  EA++RE+ EE    + +       D      H   
Sbjct: 33  MVLVQAPNGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNHRQT 92

Query: 132 SKKIILHFY 140
           +     +FY
Sbjct: 93  AYYNPGYFY 101

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} Length = 144

 Score = 55.8 bits (135), Expect = 3e-10
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 5/70 (7%)

Query: 76  VLMQMR-----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYS 130
           VL+  R       G   FPGG ++ GE+P  AL REL EE+ ++ +           H  
Sbjct: 22  VLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASCLAPLAFASHSY 81

Query: 131 QSKKIILHFY 140
            +  +++  Y
Sbjct: 82  DTFHLLMPLY 91

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei} Length = 157

 Score = 55.5 bits (134), Expect = 4e-10
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 12/74 (16%)

Query: 76  VLMQMR----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVC----I 127
           +L+  R      G  G PGG VD  E    A+ RE+ EE+ +     ++ + L+C    I
Sbjct: 42  ILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGI----ALERATLLCVVDHI 97

Query: 128 HYSQSKKIILHFYA 141
             +  +  +   Y 
Sbjct: 98  DAANGEHWVAPVYL 111

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A Length = 176

 Score = 55.9 bits (135), Expect = 4e-10
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 12/73 (16%)

Query: 76  VLMQMR----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCI---- 127
           VL+ M+      G     GG V  GE+  +   REL EE  L     V     V      
Sbjct: 38  VLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGL----TVDALHKVGQIVFE 93

Query: 128 HYSQSKKIILHFY 140
              + + + +H +
Sbjct: 94  FVGEPELMDVHVF 106

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A* Length = 129

 Score = 54.5 bits (132), Expect = 7e-10
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 4/54 (7%)

Query: 88  FPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQSKKII-LHFY 140
           FPGG ++ GE+P +A+ REL EE+ + P++         + Y    + I L F+
Sbjct: 35  FPGGKIEMGETPEQAVVRELQEEVGITPQHFSL---FEKLEYEFPDRHITLWFW 85

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367} Length = 161

 Score = 54.6 bits (132), Expect = 9e-10
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 12/73 (16%)

Query: 76  VLMQMR----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCI---- 127
           VL++ +    +     FPGG V+ GE    A  RE+ EE  L    ++            
Sbjct: 25  VLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGL----RLSGVTFCGTCEWF 80

Query: 128 HYSQSKKIILHFY 140
              +  + +   Y
Sbjct: 81  DDDRQHRKLGLLY 93

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} Length = 140

 Score = 54.1 bits (131), Expect = 1e-09
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 88  FPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQS-KKIILHFY 140
           FPGG V+ GES  EAL RE+ EE++   +   K   L+ +H++    +I +H +
Sbjct: 38  FPGGKVEEGESLQEALQREIMEEMDYVIEVGEK---LLTVHHTYPDFEITMHAF 88

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A* Length = 153

 Score = 54.2 bits (131), Expect = 1e-09
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 88  FPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQSKKII-LHFY 140
           FPGG ++ GE+P EAL RELNEE+ +  +        +   +S     I + FY
Sbjct: 52  FPGGKIENGETPEEALARELNEELGIEAEVGEL---KLACTHSYGDVGILILFY 102

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei} Length = 153

 Score = 54.3 bits (131), Expect = 1e-09
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 12/73 (16%)

Query: 76  VLMQMR------FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCI-- 127
            L+  R        G    PGG V+  ES  E + RE+ EE  +     +   D+     
Sbjct: 22  FLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGI----TMVPGDIAGQVN 77

Query: 128 HYSQSKKIILHFY 140
                KK+I   +
Sbjct: 78  FELTEKKVIAIVF 90

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli} Length = 140

 Score = 53.8 bits (130), Expect = 1e-09
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 88  FPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQSKKII-LHFY 140
           F GG V+  ES  +AL REL EE+ +          +       S +II LH +
Sbjct: 39  FAGGKVEPDESQRQALVRELREELGIEATVGEY---VASHQREVSGRIIHLHAW 89

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans} Length = 188

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 5/53 (9%)

Query: 76  VLMQMR-FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCI 127
           VL+  +   G+   PGG ++AGES LE + RE  EE  +     VK+ +L  I
Sbjct: 17  VLLLQKPRRGWWVAPGGKMEAGESILETVKREYWEETGI----TVKNPELKGI 65

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae} Length = 158

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 13/74 (17%)

Query: 76  VLMQMR-----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCI--- 127
           VL+  R       G   FPGG V+ GE+P  +L REL EE+ ++    V+  +L  +   
Sbjct: 43  VLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVH----VQADNLFPLTFA 98

Query: 128 -HYSQSKKIILHFY 140
            H  ++  +++  Y
Sbjct: 99  SHGYETFHLLMPLY 112

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1 Length = 155

 Score = 53.2 bits (128), Expect = 4e-09
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 12/73 (16%)

Query: 76  VLMQMRFD-----GYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIH-- 128
           V+MQ R           FPGG V+  E+  E++ RE+ EE  L     +++  LV I   
Sbjct: 23  VVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGL----TIQNPQLVGIKNW 78

Query: 129 -YSQSKKIILHFY 140
                 + I+  Y
Sbjct: 79  PLDTGGRYIVICY 91

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes} Length = 149

 Score = 51.1 bits (122), Expect = 2e-08
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 5/92 (5%)

Query: 66  IFATYTARANVLMQMRFD-GYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDL 124
            F    A     +  R D     F  G  +  E+  E   RE  EE+NL+   K+   D 
Sbjct: 12  PFIKTEANYQFGVLHRTDADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDS 71

Query: 125 VC----IHYSQSKKIILHFYALQVEKTDVLEI 152
                  H+S +K  ++  Y   ++ T     
Sbjct: 72  HASIPNFHFSFNKPYVVPEYCFAIDLTSCSYQ 103

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum} Length = 163

 Score = 50.7 bits (121), Expect = 3e-08
 Identities = 15/38 (39%), Positives = 19/38 (50%)

Query: 76  VLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINL 113
           VL+     G    PGG  + GE   +AL RE+ EE  L
Sbjct: 29  VLVTASRGGRYNLPGGKANRGELRSQALIREIREETGL 66

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} Length = 146

 Score = 50.2 bits (120), Expect = 3e-08
 Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 3/77 (3%)

Query: 76  VLMQMRFDGYI-GFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQSKK 134
           +L+    +     FP G +   E+ ++   RE+ EEI  +    + D+    I  +   K
Sbjct: 19  ILLVQGTESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDDNQ--FIERNIQGK 76

Query: 135 IILHFYALQVEKTDVLE 151
               F    V +    +
Sbjct: 77  NYKIFLISGVSEVFNFK 93

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str} Length = 171

 Score = 50.5 bits (121), Expect = 3e-08
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 18/84 (21%)

Query: 61  YNDDKIFATYTARANVLMQMRFD-GYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKV 119
             D+K+         +L++ +        PGG V+ GE+  EA+ RE+ EE  L    +V
Sbjct: 31  IEDEKV---------LLVKQKVANRDWSLPGGRVENGETLEEAMIREMREETGL----EV 77

Query: 120 KDSDLVCIHYSQ---SKKIILHFY 140
           K   L+ +   +   S  ++   +
Sbjct: 78  KIKKLLYV-CDKPDASPSLLHITF 100

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae} Length = 154

 Score = 50.5 bits (121), Expect = 3e-08
 Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 11/86 (12%)

Query: 76  VLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIH---YSQS 132
           +L+     G     GG +   ES  +A+ RE+ EE+ +    K +   L  +    +   
Sbjct: 32  LLVTKD-KGKYYTIGGAIQVNESTEDAVVREVKEELGV----KAQAGQLAFVVENRFEVD 86

Query: 133 KK---IILHFYALQVEKTDVLEIEKG 155
                 I   Y + + +   L +++ 
Sbjct: 87  GVSYHNIEFHYLVDLLEDAPLTMQED 112

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Length = 165

 Score = 50.6 bits (121), Expect = 3e-08
 Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 10/81 (12%)

Query: 76  VLMQMRFDGYI------GFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHY 129
            L+    D            GG V+ GE   EAL RE+ EE+      ++  SD+    +
Sbjct: 41  YLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGE----QLILSDITPWTF 96

Query: 130 SQSKKIILHFYALQVEKTDVL 150
               +I  +    Q E   + 
Sbjct: 97  RDDIRIKTYADGRQEEIYMIY 117

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A* Length = 212

 Score = 50.9 bits (122), Expect = 4e-08
 Identities = 24/124 (19%), Positives = 38/124 (30%), Gaps = 17/124 (13%)

Query: 57  MIFAYNDDKIFATYTARANVLM--QMRF--DGY-IGFPGGLVDAGESPLEALNRELNEEI 111
            +                 +++  Q R    GY I FP GL+D GE+P  A  REL EE 
Sbjct: 65  AVIPVLQRT-----LHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEET 119

Query: 112 NLNPKYKVKDSDL-VCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTV 170
                       + +    S      +H   + +   D                E +  +
Sbjct: 120 GYKGDIAECSPAVCMDPGLSNCT---IHIVTVTINGDDAENARPKPKPGDG---EFVEVI 173

Query: 171 RVPL 174
            +P 
Sbjct: 174 SLPK 177

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} Length = 156

 Score = 49.8 bits (119), Expect = 6e-08
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 8/70 (11%)

Query: 76  VLMQMR----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQ 131
           VL+         G    P G ++ GE+ +EAL RE+ EE  L      +   L+ +    
Sbjct: 34  VLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGL----HCEPETLLSVEERG 89

Query: 132 SKKIILHFYA 141
              +   F A
Sbjct: 90  PSWVRFVFLA 99

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A* Length = 198

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 13/66 (19%)

Query: 50  GYHASHCMIFAYNDDKIFATYTARANVLM-QMRF--DGYI-GFPGGLVDAGESPLEALNR 105
             +    MI    DD +         +L+ +     + Y  GF  GL+D GES  EA NR
Sbjct: 46  PTNREAVMIVPIVDDHL---------ILIREYAVGTESYELGFSKGLIDPGESVYEAANR 96

Query: 106 ELNEEI 111
           EL EE+
Sbjct: 97  ELKEEV 102

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A Length = 156

 Score = 47.2 bits (112), Expect = 5e-07
 Identities = 14/40 (35%), Positives = 24/40 (60%)

Query: 77  LMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK 116
           L++ +  G   +PGG V+  E+P+EA+ RE  EE  +  +
Sbjct: 16  LVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVE 55

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A* Length = 159

 Score = 46.7 bits (111), Expect = 7e-07
 Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 7/86 (8%)

Query: 73  RANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIH---Y 129
              +       G    P G V+ GE+P +A  RE  EE  L    +V+    +  +   +
Sbjct: 32  EKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGL----RVRPVKFLGAYLGRF 87

Query: 130 SQSKKIILHFYALQVEKTDVLEIEKG 155
                I+ H +  + E    L     
Sbjct: 88  PDGVLILRHVWLAEPEPGQTLAPAFT 113

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A* Length = 160

 Score = 46.1 bits (109), Expect = 1e-06
 Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 12/88 (13%)

Query: 76  VLMQMR----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHY-- 129
            L+  R      GY   PGG V   E+   A  R    E+ L           V  H+  
Sbjct: 32  FLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYD 91

Query: 130 ------SQSKKIILHFYALQVEKTDVLE 151
                   +   ++  +  +V + ++L 
Sbjct: 92  DNFSGTDFTTHYVVLGFRFRVSEEELLL 119

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A Length = 153

 Score = 45.9 bits (109), Expect = 1e-06
 Identities = 14/89 (15%), Positives = 28/89 (31%), Gaps = 11/89 (12%)

Query: 76  VLMQMRFD---GYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHY--- 129
            L+             P G ++A E+ +EA  REL EE  +      +    + +H    
Sbjct: 18  FLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGI----SAQPQHFIRMHQWIA 73

Query: 130 -SQSKKIILHFYALQVEKTDVLEIEKGAL 157
             ++  +   F     +       +    
Sbjct: 74  PDKTPFLRFLFAIELEQICPTQPHDSDID 102

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A Length = 164

 Score = 46.0 bits (110), Expect = 1e-06
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 2/30 (6%)

Query: 88  FP-GGLVDAGESPLEALNRELNEEINLNPK 116
           FP GG ++ GES  +A+ REL EE+ L+ K
Sbjct: 35  FPQGG-INPGESAEQAMYRELFEEVGLSRK 63

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A Length = 205

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 16/101 (15%), Positives = 38/101 (37%), Gaps = 16/101 (15%)

Query: 31  LNDFIELTQSDLKDDKYKSGYHASHCMIFA---YNDDKIFATYTARANVLMQMRFDGYIG 87
           ++ + +     ++        + +  +      + ++K+         + ++ + DG   
Sbjct: 43  MSHYTKTDWEVVEKLFASETGYQTPKVDIRAVVFQNEKL---------LFVKEKSDGKWA 93

Query: 88  FPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIH 128
            PGG  D G +P E   +E+ EE       +V    L+ I 
Sbjct: 94  LPGGWADVGYTPTEVAAKEVFEETGY----EVDHFKLLAIF 130

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A Length = 194

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 19/34 (55%), Positives = 24/34 (70%), Gaps = 2/34 (5%)

Query: 84  GYIGFPGGLVDAGESPLE-ALNRELNEEINLNPK 116
           G I FPGG +DAGE+P + AL RE  EE+ L+P 
Sbjct: 64  GQIAFPGGSLDAGETPTQAAL-REAQEEVALDPA 96

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus} Length = 139

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 87  GFPGGLVDAGESPLEALNRELNEEINLNPKY 117
             PGG V+ GE   EA  RE+ EE  L  + 
Sbjct: 40  ALPGGFVEVGERVEEAAAREMREETGLEVRL 70

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A* Length = 182

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 71  TARANVLM--QMRF--DGY-IGFPGGLVDAGESPLEALNRELNEEI 111
           T R   L+  Q R     + +  P G VD GE+P  A  REL EE+
Sbjct: 50  TERGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEV 95

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B* Length = 271

 Score = 45.8 bits (108), Expect = 3e-06
 Identities = 19/116 (16%), Positives = 41/116 (35%), Gaps = 18/116 (15%)

Query: 46  KYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMRFD-GYIGFPGGLVDAGESPLEALN 104
           +YK+       ++   +  +          VL++        GFP G +D  ES ++   
Sbjct: 96  RYKTRIPVRGAIMLDMSMQQC---------VLVKGWKASSGWGFPKGKIDKDESDVDCAI 146

Query: 105 RELNEEINLNPKYKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVL------EIEK 154
           RE+ EE   +   ++  ++   I  +   + +  +    +            EI K
Sbjct: 147 REVYEETGFDCSSRINPNE--FIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISK 200

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* Length = 126

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 76  VLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQSKKI 135
           VL+     G+  FP G  + GES  EA  RE+ EE  +  +       L    Y   K +
Sbjct: 16  VLLLRDRMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAE---VLLPLYPTRYVNPKGV 72

Query: 136 --ILHFYALQVEKTDVLE 151
              +H++ ++ E    LE
Sbjct: 73  EREVHWFLMRGEGAPRLE 90

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis} Length = 206

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 76  VLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIH 128
           +L+    DG    PGG  D  +S  + + +E+ EE  L     V+   +V I 
Sbjct: 83  ILLVQENDGLWSLPGGWCDVDQSVKDNVVKEVKEEAGL----DVEAQRVVAIL 131

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Length = 352

 Score = 45.8 bits (108), Expect = 4e-06
 Identities = 22/127 (17%), Positives = 38/127 (29%), Gaps = 26/127 (20%)

Query: 17  NLAATEVYGRPSTNLNDFIELTQSDLKDDKYKSGYHASHCMIFAYNDDKIFATYTARAN- 75
           N  ATE   +    +     +  +D K   Y          ++     +       +   
Sbjct: 140 NFNATEFRQKFYNGIISKQYMCSNDPKLGTYNFLTKFMDTQVYQDLVAENNYVIEYKRLW 199

Query: 76  ---------------------VLMQMR----FDGYIGFPGGLVDAGESPLEALNRELNEE 110
                                +LM  R           PGG ++  E+  +A+ REL EE
Sbjct: 200 LKAPFKPNFVTVDALVIVNDHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEE 259

Query: 111 INLNPKY 117
            N+N  +
Sbjct: 260 TNINLTH 266

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua} Length = 187

 Score = 44.8 bits (106), Expect = 5e-06
 Identities = 23/115 (20%), Positives = 34/115 (29%), Gaps = 23/115 (20%)

Query: 56  CMIFAYNDDKIFATYTARANVLMQMR-----------FDGYIGFPGGLVDAGESPLEALN 104
            ++    +           ++L+  R             G    PGG VD  ES  +A  
Sbjct: 32  MILTTVKELN----GKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAE 87

Query: 105 RELNEEINLNPKY----KVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKG 155
           REL EE +L         V D             II   +   V    + +   G
Sbjct: 88  RELEEETSLTDIPLIPFGVFDK----PGRDPRGWIISRAFYAIVPPEALEKRAAG 138

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* Length = 138

 Score = 43.7 bits (104), Expect = 6e-06
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 84  GYIGFPGGLVDAGESPLEALNRELNEEINLNPK--YKVKDSDLVCIHYSQSKKIILHFYA 141
            +   P G VD GE   +A  RE  EE N+  +     +D      + ++ K   + ++ 
Sbjct: 30  HHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKGKPKSVKYWL 89

Query: 142 LQVEKTDVLEIE 153
            ++   D +++ 
Sbjct: 90  AKLNNPDDVQLS 101

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A Length = 170

 Score = 43.7 bits (104), Expect = 8e-06
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 15/74 (20%)

Query: 43  KDDKYKSGYHASHCMIFAYNDDKIFATYTARANVLM--QMRF--DGYI-GFPGGLVDAGE 97
            + +Y+   H     + A  + ++          L   QMR          P GL++ GE
Sbjct: 24  LEGRYEIVEHKPAVAVIALREGRM----------LFVRQMRPAVGLAPLEIPAGLIEPGE 73

Query: 98  SPLEALNRELNEEI 111
            PLEA  REL E+ 
Sbjct: 74  DPLEAARRELAEQT 87

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans} Length = 145

 Score = 43.3 bits (103), Expect = 8e-06
 Identities = 14/60 (23%), Positives = 19/60 (31%), Gaps = 14/60 (23%)

Query: 57  MIFAYNDDKIFATYTARANVLM--QMRF--DGYI-GFPGGLVDAGESPLEALNRELNEEI 111
            I                  ++  Q R+     I     G V+ GE    A  REL EE+
Sbjct: 9   FILPVTAQG---------EAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEV 59

>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A* Length = 153

 Score = 43.6 bits (103), Expect = 9e-06
 Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 76  VLMQMRFDGYI--GFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYS-Q 131
            L+    DG      P G V+ GE  LE   R   EE  +      + +     ++Y  +
Sbjct: 31  FLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEGFKRELNYVAR 90

Query: 132 SKKIILHFYALQVEKTDV 149
           +K   + ++  +V+  DV
Sbjct: 91  NKPKTVIYWLAEVKDYDV 108

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6 Length = 273

 Score = 44.6 bits (105), Expect = 9e-06
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 10/65 (15%)

Query: 56  CMIFAYNDDKIFATYTARANVLMQMR----FDGYIGFPGGLVDAGESPLEALNRELNEEI 111
            ++  YN +        +  VL+  R    F      PGG V+  ES  +++ RE  EE 
Sbjct: 44  MVLLCYNKE------ADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEET 97

Query: 112 NLNPK 116
            +   
Sbjct: 98  GVVIS 102

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2 Length = 180

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 20/82 (24%)

Query: 43  KDDKYKSG-YH-ASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPG-------GLV 93
           ++        H A++ ++                 +L+Q R +     PG       G+V
Sbjct: 27  REQMRAQCLRHRATYIVVH-----------DGMGKILVQRRTETKDFLPGMLDATAGGVV 75

Query: 94  DAGESPLEALNRELNEEINLNP 115
            A E  LE+  RE  EE+ +  
Sbjct: 76  QADEQLLESARREAEEELGIAG 97

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A* Length = 165

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)

Query: 88  FP-GGLVDAGESPLEALNRELNEEINLNP 115
            P GG +D GE P  A  REL EE  +  
Sbjct: 42  MPQGG-IDEGEDPRNAAIRELREETGVTS 69

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP} Length = 341

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 10/90 (11%)

Query: 76  VLMQMR----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIH-YS 130
           VLM  R      G I  PGG +   E+ +E + REL EE  L     V    +V  H + 
Sbjct: 216 VLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGSIVDSHVFD 275

Query: 131 QSKK-----IILHFYALQVEKTDVLEIEKG 155
              +      I H Y +Q+   ++  ++ G
Sbjct: 276 APGRSLRGRTITHAYFIQLPGGELPAVKGG 305

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A Length = 171

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 24/108 (22%)

Query: 51  YH-ASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPG-------GLVDAGESPLEA 102
                +  +   N             + +  R      FP        G V +GE+  EA
Sbjct: 33  RVRVVNAFLR--NSQG---------QLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEA 81

Query: 103 LNRELNEEINLNPKYKVKDSDLVCIHYSQSKKIILH-FYALQVEKTDV 149
             RE  EE+N+    ++       +      +  L  F  +   ++D 
Sbjct: 82  FRREAREELNV----EIDALSWRPLASFSPFQTTLSSFMCVYELRSDA 125

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124} Length = 159

 Score = 42.7 bits (100), Expect = 2e-05
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 76  VLMQMRFD-GYIGFPGGLVDAGESPLEALNRELNEEINLNPK 116
           VL+ +      +   GG ++  E P EA  RE  EE  LN  
Sbjct: 19  VLLHLHKKAKKMLPLGGHIEVNELPEEACIREAKEEAGLNVT 60

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6 Length = 226

 Score = 43.1 bits (101), Expect = 2e-05
 Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 12/100 (12%)

Query: 56  CMIFAYNDDKIFATYTARANVLMQMR----FDGYIGFPGGLVDAGESPLEALNRELNEEI 111
           C+IF +N+ +I        ++L+  R      G     GG V   ES  +A  R L E  
Sbjct: 18  CIIFGFNEGEI--------SLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELT 69

Query: 112 NLNPKYKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLE 151
            L   Y  +      I     ++++   Y   +   +   
Sbjct: 70  GLENVYMEQVGAFGAIDRDPGERVVSIAYYALININEYDR 109

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Length = 153

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 4/45 (8%)

Query: 84  GYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIH 128
             +  P G ++ GES ++A +RE+ EE             L  I+
Sbjct: 33  IKLNQPAGHLEPGESIIQACSREVLEETGH----SFLPEVLTGIY 73

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718} Length = 189

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 7/49 (14%)

Query: 84  GYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQS 132
           G    P G ++  E+ ++   RE  EE N     +V+  +L   +   S
Sbjct: 65  GKWTLPAGFMENNETLVQGAARETLEEANA----RVEIREL---YAVYS 106

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A Length = 150

 Score = 41.0 bits (96), Expect = 6e-05
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 75  NVLMQMRFD--GYIGFPGGLVDAGESPLEALNRELNEEINLNP 115
            VLM  R D   +     G V+ GE+  +A  RE+ EE+ ++ 
Sbjct: 23  RVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTIDV 65

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A* Length = 292

 Score = 42.2 bits (98), Expect = 7e-05
 Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 11/132 (8%)

Query: 52  HASHCMIFAYNDDKIFATYTARAN-------VLMQMRFDGYIGFPGGLVDAGESPLEALN 104
           HA+  +I  +  D          +       V ++ +  G    PGG+VD GE     L 
Sbjct: 111 HAADPIITRWKRDSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLK 170

Query: 105 RELNEEINLNPKYKVKDSD----LVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSH 160
           RE  EE   + +    +       +   +SQ   +I   Y      TD   +E  A+  H
Sbjct: 171 REFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYH 230

Query: 161 DYGVEVLGTVRV 172
           D   E++  + +
Sbjct: 231 DETGEIMDNLML 242

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A* Length = 194

 Score = 41.6 bits (97), Expect = 7e-05
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 81  RFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQSKKIILHFY 140
           R       PGG ++  E P  A  RE+ EE  +    K     LV I  +Q +K   + Y
Sbjct: 63  RHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGV----KGTLGRLVGIFENQERKHRTYVY 118

Query: 141 ALQVEK 146
            L V +
Sbjct: 119 VLIVTE 124

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens} Length = 199

 Score = 41.5 bits (97), Expect = 7e-05
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 4/44 (9%)

Query: 87  GFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYS 130
            FPGGL +  E   +   RE+ EE  +    K +   ++ I   
Sbjct: 55  KFPGGLSEPEEDIGDTAVREVFEETGI----KSEFRSVLSIRQQ 94

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A* Length = 240

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 14/79 (17%)

Query: 45  DKYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMR----FDGYIGFPGGLVD--AGES 98
             +K+       ++F Y+D ++         VL+  R    F G  G PGG +D    ES
Sbjct: 16  KAFKAQLLTVDAVLFTYHDQQL--------KVLLVQRSNHPFLGLWGLPGGFIDETCDES 67

Query: 99  PLEALNRELNEEINLNPKY 117
             + + R+L E+  + P Y
Sbjct: 68  LEQTVLRKLAEKTAVVPPY 86

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124} Length = 197

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 73  RANVLMQMRFD-GYIGFPGGLVDAGESPLEALNRELNEEINLN 114
           R   LM          + GG  D  +  L+   +EL EE  + 
Sbjct: 57  RNKFLMIHHNIYNSWAWTGGHSDNEKDQLKVAIKELKEETGVK 99

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A* Length = 190

 Score = 39.0 bits (91), Expect = 5e-04
 Identities = 17/87 (19%), Positives = 27/87 (31%), Gaps = 21/87 (24%)

Query: 51  YH-ASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPG-------GLVDAGESPLEA 102
            H A    +F            A+  +L+  R      +PG       G    GES  +A
Sbjct: 31  LHLAFSSWLF-----------NAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDA 79

Query: 103 LNRELNEEINLNPKYKVKDSDLVCIHY 129
           + R    E+ +       +S      Y
Sbjct: 80  VIRRCRYELGVEI--TPPESIYPDFRY 104

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A Length = 209

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 15/91 (16%)

Query: 88  FPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYS----QSKKIILHFYALQ 143
              G+++ GES  +   RE  EE        VK +  V    +     S++        +
Sbjct: 94  MVAGMIEEGESVEDVARREAIEEAG----LIVKRTKPVLSFLASPGGTSERS--SIMVGE 147

Query: 144 VEKTDVLEIEKGALTSHDYGVEVLGTVRVPL 174
           V+ T    I    L   +   E +    V  
Sbjct: 148 VDATTASGI--HGLADEN---EDIRVHVVSR 173

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170} Length = 300

 Score = 38.9 bits (90), Expect = 8e-04
 Identities = 14/84 (16%), Positives = 23/84 (27%), Gaps = 15/84 (17%)

Query: 53  ASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPG-------GLVDAGESPLEALNR 105
             H   +      +         + +  R       PG       G   A  S  + L +
Sbjct: 120 GVHLNGYVGAGADLH--------LWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIK 171

Query: 106 ELNEEINLNPKYKVKDSDLVCIHY 129
           E  EE +L      +   +  I Y
Sbjct: 172 ECAEEADLPEALARQAIPVGAITY 195

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	232
3kvh_A	214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	99.97
1u20_A	212	U8 snoRNA-binding protein X29; modified nudix hydr	99.95
2xsq_A	217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	99.92
1vhz_A	198	ADP compounds hydrolase NUDE; structural genomics;	99.89
2yvp_A	182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.88
3i7u_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.88
2dsc_A	212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.88
1mk1_A	207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.88
1g0s_A	209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.87
3o6z_A	191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.86
1v8y_A	170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.85
3u53_A	155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.84
3eds_A	153	MUTT/nudix family protein; MUT/nudix protein, prot	99.81
1ktg_A	138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.8
4dyw_A	157	MUTT/nudix family protein; structural genomics, ni	99.8
2pbt_A	134	AP4A hydrolase; nudix protein, diadenosine polypho	99.8
3q91_A	218	Uridine diphosphate glucose pyrophosphatase; struc	99.79
3son_A	149	Hypothetical nudix hydrolase; structural genomics,	99.79
1vcd_A	126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.78
2yyh_A	139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.78
3q1p_A	205	Phosphohydrolase (MUTT/nudix family protein); asym	99.77
3f6a_A	159	Hydrolase, nudix family; protein structure initiat	99.77
3gg6_A	156	Nudix motif 18, nucleoside diphosphate-linked moie	99.77
1sjy_A	159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.77
3grn_A	153	MUTT related protein; structural genomics, hydrola	99.77
2w4e_A	145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.76
3o8s_A	206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.76
3cng_A	189	Nudix hydrolase; structural genomics, APC7497, PSI	99.76
2azw_A	148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.75
2fb1_A	226	Conserved hypothetical protein; structural genomic	99.75
3shd_A	153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.75
2pqv_A	154	MUTT/nudix family protein; structu genomics, PSI-2	99.75
3gwy_A	140	Putative CTP pyrophosphohydrolase; structural geno	99.75
2kdv_A	164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.75
2fkb_A	180	Putative nudix hydrolase YFCD; putative protein, M	99.74
1rya_A	160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.74
3r03_A	144	Nudix hydrolase; structural genomics, PSI2, protei	99.74
3hhj_A	158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.74
3q93_A	176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.74
3oga_A	165	Nucleoside triphosphatase NUDI; salmonella enteric	99.73
3fcm_A	197	Hydrolase, nudix family; protein structure initiat	99.73
3id9_A	171	MUTT/nudix family protein; hydrolase, protein stru	99.73
3i9x_A	187	MUTT/nudix family protein; structural genomics, hy	99.73
2o1c_A	150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.73
1f3y_A	165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.72
3h95_A	199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.72
1hzt_A	190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.72
3gz5_A	240	MUTT/nudix family protein; DNA binding protein, nu	99.72
3fk9_A	188	Mutator MUTT protein; structural genomics, hydrola	99.72
3exq_A	161	Nudix family hydrolase; protein structure initiati	99.71
3ees_A	153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.71
3f13_A	163	Putative nudix hydrolase family member; structural	99.71
2b0v_A	153	Nudix hydrolase; structural genomics, PSI, protein	99.71
2jvb_A	146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.71
2b06_A	155	MUTT/nudix family protein; structural genomics, P	99.7
1nqz_A	194	COA pyrophosphatase (MUTT/nudix family protein); D	99.7
1vk6_A	269	NADH pyrophosphatase; 1790429, structural genomics	99.7
2fvv_A	194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.7
2fml_A	273	MUTT/nudix family protein; structural genomics, PS	99.69
1k2e_A	156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.69
1q27_A	171	Putative nudix hydrolase DR0079; radiation resista	99.69
2rrk_A	140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.68
1mut_A	129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.67
2qjo_A	341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.64
2qjt_B	352	Nicotinamide-nucleotide adenylyltransferase; two i	99.63
2a6t_A	271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.63
3dup_A	300	MUTT/nudix family protein; nudix superfamily hydro	99.6
3fjy_A	364	Probable MUTT1 protein; dimer, protein structure i	99.59
1q33_A	292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	99.59
1x51_A	155	A/G-specific adenine DNA glycosylase; nudix domain	99.59
2dho_A	235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	99.59
2pny_A	246	Isopentenyl-diphosphate delta-isomerase 2; caroten	99.57
3e57_A	211	Uncharacterized protein TM1382; structural genomic	99.57
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	99.43
3qsj_A	232	Nudix hydrolase; structural genomics, PSI-biology,	99.39
3bho_A	208	Cleavage and polyadenylation specificity factor su	99.14
3rh7_A	321	Hypothetical oxidoreductase; FMN-binding split bar	99.03

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}

Probab=99.97  E-value=1.7e-33  Score=218.43  Aligned_cols=182  Identities=37%  Similarity=0.579  Sum_probs=158.6

Q ss_pred             cccccc-CCccceEEEEEEecCCceEEEEeccCcEEEEEEeeCCeeecceeecCCCC-CHHHHHhHHHHHhhCC-CCc-c
Q psy7748          42 LKDDKY-KSGYHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGE-SPLEALNRELNEEINL-NPK-Y  117 (232)
Q Consensus        42 ~~~~~~-~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~g~w~lPgG~ve~gE-s~~~aa~REl~EEtGl-~~~-~  117 (232)
                      .+.+.+ ++++++|.++++.++...+|+.++-+..+|+|.|++|.|+||||+||+|| |+++|+.||+.||+|+ .+. .
T Consensus        11 ~eal~~~~~~~hach~mlya~~~~~lfg~~p~r~~iLmQ~R~~G~weFPGGkVe~gE~t~e~aL~REl~EElg~~~V~~~   90 (214)
T 3kvh_A           11 VEAMRLGPGWSHSCHAMLYAANPGQLFGRIPMRFSVLMQMRFDGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGCLRLTEA   90 (214)
T ss_dssp             HHHTTSCTTCEEEEEEEEEEEEEEEETTTEEEEEEEEEEEETTSCEECSEEEECTTTCCHHHHHHHSCCSCC---CCCGG
T ss_pred             HHHHhhccCccEeeEEEEEcCCccccccccchhheEEEeeeeCCEEeCCCccCCCCCCCHHHHHHHHHHHhhCCeeeeee
Confidence            344555 78999999999999999999888888899999999999999999999999 9999999999999997 455 2


Q ss_pred             eeeeceeeeeeecCC-cEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccccCCchHHHHHHHHHHH
Q psy7748         118 KVKDSDLVCIHYSQS-KKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGLPCFLTHSFIGNA  196 (232)
Q Consensus       118 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~~~~~l~~~~i~~~  196 (232)
                      ...     ....... ..+..+||.|.+..+++...+.++....|.+.|++....||+..+.+.+.++|+|+.|.|++++
T Consensus        91 ~y~-----~s~~~~yp~~V~LHfY~crl~~Ge~~~lE~~A~~A~d~G~EvlGlvRVPlytl~D~~gGlP~FL~nsFig~a  165 (214)
T 3kvh_A           91 DYL-----SSHLTEGPHRVVAHLYARQLTLEQLHAVEISAVHSRDHGLEVLGLVRVPLYTQKDRVGGFPNFLSNAFVSTA  165 (214)
T ss_dssp             GEE-----EEEEC----CEEEEEEEEECCHHHHHHHHHHHHTSTTBTTTEEEEEEECCCBCTTSSTBHHHHHTSCBCTTH
T ss_pred             eeE-----EEEeccCCCEEEEEEEEEEeeCCccchhhhcccCCcccCceecceEEeeeEEeccCCCchhHHHHhhhHHHH
Confidence            221     1111111 3688999999999999988888888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCHHHHHHHHhcCCCCccc
Q psy7748         197 KHQLLAALLKLKILSPEEINQALNAKPVPVKV  228 (232)
Q Consensus       197 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  228 (232)
                      |+||+.+|+..++++++++.+|..++.++||.
T Consensus       166 r~qLl~aL~~l~ll~~~~~~~a~~~~~~~~~~  197 (214)
T 3kvh_A          166 KCQLLFALKVLNMMPEEKLVEALAAATEKQKK  197 (214)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHhccCcchh
Confidence            99999999999999999999999999998874

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*

Probab=99.95  E-value=1.7e-28  Score=198.49  Aligned_cols=191  Identities=38%  Similarity=0.609  Sum_probs=149.3

Q ss_pred             eeeecCCccCccccccccCCcccccccCCccceEEEEEEecCCceEEEEeccCcEEEEEEeeCCeeecceeecCCCC-CH
Q psy7748          21 TEVYGRPSTNLNDFIELTQSDLKDDKYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGE-SP   99 (232)
Q Consensus        21 ~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~g~w~lPgG~ve~gE-s~   99 (232)
                      ..+|+++|+++.+.+.+|++          ++++.++++.++..+++.+...++.+|+++|++|.|+||||++++|| |+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~vv~~i~~~~~~vLl~~r~~g~w~~PGG~ve~gE~t~   82 (212)
T 1u20_A           13 EDKPRPRNISREESLQLEGY----------KHACHALLHAPSQAKLFDRVPIRRVLLMMMRFDGRLGFPGGFVDTRDISL   82 (212)
T ss_dssp             -CCCCSEECCHHHHHSCSSC----------EEEEEEEEEEECCCEETTTEECCEEEEEEEETTSCEECSEEEECTTTSCH
T ss_pred             ccccccccCCHHHHhhcCCC----------cccceEEEeCCCceEEEEEEecCCEEEEEEeCCCeEECCCcccCCCCCCH
Confidence            37899999988766666554          56788888888877777766777889999999999999999999999 99


Q ss_pred             HHHHhHHHHHhhCCCCc-ceee--eceeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcc
Q psy7748         100 LEALNRELNEEINLNPK-YKVK--DSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYT  176 (232)
Q Consensus       100 ~~aa~REl~EEtGl~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~e  176 (232)
                      ++||+||++||||+.+. ..+.  ..........+ .+...++|.+.+..+.+...+.+...+.+.+.|+.++.|+|+++
T Consensus        83 ~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~Ev~~~~wvpl~e  161 (212)
T 1u20_A           83 EEGLKRELEEELGPALATVEVTEDDYRSSQVREHP-QKCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYT  161 (212)
T ss_dssp             HHHHHHHHHHHHCGGGGGCCCCGGGEEEEEEECTT-SCEEEEEEEEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSB
T ss_pred             HHHHHHHHHHHHCCCccccceeeeeEEEeccccCC-CcEEEEEEEEEecCCCcccccccccccccCCcceEEEEEEEHHH
Confidence            99999999999999987 4321  11111112122 36777888888765544433333334444556899999999999


Q ss_pred             cccccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcC
Q psy7748         177 MGDGFRGLPCFLTHSFIGNAKHQLLAALLKLKILSPEEINQALNAK  222 (232)
Q Consensus       177 l~~~i~~~~~~l~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  222 (232)
                      +.+....+|.|+.+.++..++.+++..|...++++.+++.+|..++
T Consensus       162 l~~~~~~~p~f~~~~~i~~a~~~l~~~l~~~~~~~~~~~~~~~~~~  207 (212)
T 1u20_A          162 LRDRVGGLPAFLCNNFIGNSKSQLLYALRSLKLLREDQIQEVLKAS  207 (212)
T ss_dssp             CTTSSTBHHHHTTSCBCTTHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred             hhhhhcCCchhhhhhhhHHHHHHHHHHHHhCCCCChHHHHHHHHhh
Confidence            9988888899988999999999999999999999999999998765

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A

Probab=99.92  E-value=1.4e-25  Score=181.86  Aligned_cols=193  Identities=39%  Similarity=0.667  Sum_probs=121.1

Q ss_pred             eeeecCCccCccccccccCCcccccccCCccceEEEEEEecCCceEEEEeccCcEEEEEEeeCCeeecceeecCCCC-CH
Q psy7748          21 TEVYGRPSTNLNDFIELTQSDLKDDKYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGE-SP   99 (232)
Q Consensus        21 ~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~g~w~lPgG~ve~gE-s~   99 (232)
                      .-+|.+..++..+.+.++++         ++++|..+++.++...++++......+|++.|++|.|+||||++|+|| ++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~g---------~~~~~~~~~~~~~~~~v~~vi~~~~~~ll~~r~~g~w~lPGG~ve~gE~t~   91 (217)
T 2xsq_A           21 QSMAGARRLELGEALALGSG---------WRHVCHALLYAPDPGMLFGRIPLRYAILMQMRFDGRLGFPGGFVDTQDRSL   91 (217)
T ss_dssp             -----CEEECHHHHHTSCTT---------CEEEEEEEEEEEEEEEETTTEEEEEEEEEEEETTSCEECSEEECCTTCSSH
T ss_pred             ccccccccccHHHhhhccCC---------ceeEeeeEEEcCCCcEEEEEEEeeCcEEEEEccCCeEECCceecCCCCCCH
Confidence            34555555655444444343         344566666664333331111111246777888999999999999999 99


Q ss_pred             HHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccc
Q psy7748         100 LEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMG  178 (232)
Q Consensus       100 ~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~  178 (232)
                      ++||+||++||||+.+. ..+....+.........+.+.++|.+.+..+.....+.......+++.|.+++.|+|++++.
T Consensus        92 ~eaa~REl~EEtGl~~~~~~l~~l~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~e~~~~~~~~~~~E~~~v~~vPl~~l~  171 (217)
T 2xsq_A           92 EDGLNRELREELGEAAAAFRVERTDYRSSHVGSGPRVVAHFYAKRLTLEELLAVEAGATRAKDHGLEVLGLVRVPLYTLR  171 (217)
T ss_dssp             HHHHHHHHHHHHCGGGGGCCCCGGGEEEEEECSSSSEEEEEEEEECCHHHHHHHHHHGGGSTTBTTTEEEEEECCCSBCT
T ss_pred             HHHHHHHHHHHHCCCCccceeEEEEEEeecCCCCCeEEEEEEEEEeccccceecccccccccccCCceeeEEEEEHHHhh
Confidence            99999999999999886 22222222222222234677888888876544322222222223334689999999999998


Q ss_pred             cccCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhcC
Q psy7748         179 DGFRGLPCFLTHSFIGNAKHQLLAALLKLKILSPEEINQALNAK  222 (232)
Q Consensus       179 ~~i~~~~~~l~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  222 (232)
                      +.+..+|.++.+.|+..+..++++.|.+.|+++.++|++|..++
T Consensus       172 d~~~~~P~~L~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~  215 (217)
T 2xsq_A          172 DGVGGLPTFLENSFIGSAREQLLEALQDLGLLQSGSISGLKIPA  215 (217)
T ss_dssp             TSSTBHHHHTTSCBCTTHHHHHHHHHHHTTTTC-----------
T ss_pred             hccccCcHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhcc
Confidence            77778899888889999999999999999999999999997664

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*

Probab=99.89  E-value=4.6e-23  Score=164.80  Aligned_cols=146  Identities=22%  Similarity=0.183  Sum_probs=101.8

Q ss_pred             CCCCcccccceeeeeecCCccCcc-ccccccCCcccccccCC--ccceEEEEEEecCCceEEEEeccCcEEEEEEe--e-
Q psy7748           9 RTWGSSAWNLAATEVYGRPSTNLN-DFIELTQSDLKDDKYKS--GYHASHCMIFAYNDDKIFATYTARANVLMQMR--F-   82 (232)
Q Consensus         9 ~~w~~~~~~~~~~~vy~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R--~-   82 (232)
                      +.|..    ++++++|+++|++++ +++++|+|....+....  ...++++++++.+            .+|+.+|  . 
T Consensus         8 ~~~~~----~~~~~~~~~~~~~v~~~~~~~~~G~~~~~~~~~~~~~~av~vl~~~~~------------~vLLvrq~r~~   71 (198)
T 1vhz_A            8 QKPTI----LNVETVARSRLFTVESVDLEFSNGVRRVYERMRPTNREAVMIVPIVDD------------HLILIREYAVG   71 (198)
T ss_dssp             CCCEE----EEEEEEEECSSCEEEEEEEECTTSCEEEEEEECCCCCCEEEEEEEETT------------EEEEEEEEETT
T ss_pred             CCcEE----eeEEEEEECCEEEEEEEEEEcCCCCEEEEEEEEeCCCCEEEEEEEECC------------EEEEEEcccCC
Confidence            45777    999999999999999 99999999876665533  3445666656654            2344433  2 


Q ss_pred             --CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcccccccccccc
Q psy7748          83 --DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTS  159 (232)
Q Consensus        83 --~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (232)
                        ++.|+||||++|+||++++||+||++||||+.+. ...+...+....   ......++|.+.........        
T Consensus        72 ~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~---~~~~~~~~f~a~~~~~~~~~--------  140 (198)
T 1vhz_A           72 TESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPS---YFSSKMNIVVAQDLYPESLE--------  140 (198)
T ss_dssp             TTEEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTT---TCCCEEEEEEEEEEEECCCC--------
T ss_pred             CCCcEEEeCcccCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEEeCCCC---ccCcEEEEEEEEeCCcccCC--------
Confidence              2589999999999999999999999999999987 544443332211   22334455666543221110        


Q ss_pred             cCCCccceeeEeeeCcccccccC
Q psy7748         160 HDYGVEVLGTVRVPLYTMGDGFR  182 (232)
Q Consensus       160 ~~~~~E~~~~~wvpl~el~~~i~  182 (232)
                      .+ +.|.+++.|+|++++.+++.
T Consensus       141 ~~-~~E~~~~~w~~~~el~~~~~  162 (198)
T 1vhz_A          141 GD-EPEPLPQVRWPLAHMMDLLE  162 (198)
T ss_dssp             CC-CSSCCCEEEEEGGGGGGGGG
T ss_pred             CC-CCceEEEEEEEHHHHHHHHH
Confidence            11 25889999999999999863

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*

Probab=99.88  E-value=5.6e-23  Score=161.76  Aligned_cols=144  Identities=19%  Similarity=0.220  Sum_probs=106.5

Q ss_pred             CCCCcccccceeeeeecCCccCcc-ccccccCCcc-cccccCCccceEEEEEEecCCceEEEEeccCcEEEEEEee----
Q psy7748           9 RTWGSSAWNLAATEVYGRPSTNLN-DFIELTQSDL-KDDKYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMRF----   82 (232)
Q Consensus         9 ~~w~~~~~~~~~~~vy~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~----   82 (232)
                      .+|..    ++++++|+++ +++. +.+++|+|.. ..+.+...+.++++++++.++           .+|+.+|.    
T Consensus         2 ~~~~~----~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~v~v~i~~~~~-----------~vLL~~r~~~~~   65 (182)
T 2yvp_A            2 SPWER----ILLEEILSEP-VRLVKERVRTHTGRELTYVYRPGPVAASFVLPVTERG-----------TALLVRQYRHPT   65 (182)
T ss_dssp             CSSEE----EEEEEEECSS-SCEEEEEEECTTSCEEEEEEBCSSCEEEEEEEBCTTS-----------EEEEEEEEEGGG
T ss_pred             CCceE----eeeEEEEeCc-EEEEEEEEECCCCCEeeEEEEEecCCEEEEEEEcCCC-----------EEEEEEeccCCC
Confidence            34766    9999999999 9999 9999999987 677777777788888887663           45555553    


Q ss_pred             -CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeec--Cccccccccccc
Q psy7748          83 -DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEK--TDVLEIEKGALT  158 (232)
Q Consensus        83 -~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  158 (232)
                       +|.|+||||++++|||+++||+||++||||+.+. ...+...+..   ....+...++|.+....  +...        
T Consensus        66 ~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~---~~~~~~~~~~f~~~~~~~~~~~~--------  134 (182)
T 2yvp_A           66 GKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETLIPLPSFHPQ---PSFTAVVFHPFLALKARVVTPPT--------  134 (182)
T ss_dssp             TEEEEECCEEECCTTCCHHHHHHHHHHHHHCEECSCEEECCCBCSC---TTTBCCEEEEEEECSCEECSCCC--------
T ss_pred             CCcEEEeccccCCCCcCHHHHHHHHHHHHhCCCcccEEEEEEEeCC---CCccccEEEEEEEeccccCCCCC--------
Confidence             4799999999999999999999999999999987 5444433221   11234455666665321  1111        


Q ss_pred             ccCCCccceeeEeeeCccccccc
Q psy7748         159 SHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       159 ~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                       . .+.|..++.|+|++++.+++
T Consensus       135 -~-~~~E~~~~~W~~~~el~~~~  155 (182)
T 2yvp_A          135 -L-EEGELLESLELPLTEVYALL  155 (182)
T ss_dssp             -C-CTTCCEEEEEEEHHHHHHHH
T ss_pred             -C-CCCceEEEEEEEHHHHHHHH
Confidence             1 12588999999999999875

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*

Probab=99.88  E-value=1.6e-22  Score=151.91  Aligned_cols=108  Identities=17%  Similarity=0.185  Sum_probs=79.6

Q ss_pred             cceEEEEEEecCCceEEEEeccCcEEEEEEeeCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeece-eeeee
Q psy7748          51 YHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSD-LVCIH  128 (232)
Q Consensus        51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~-~~~~~  128 (232)
                      +.+|++|+++.+            ++|+.+|.+|.|.||||++|+|||+.+||+||++||||+.+. ...+... +.+..
T Consensus         4 ~~aag~vv~~~~------------~vLL~~r~~g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~l~~~~~~~~~   71 (134)
T 3i7u_A            4 EFSAGGVLFKDG------------EVLLIKTPSNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGEIHYWYTL   71 (134)
T ss_dssp             EEEEEEEEEETT------------EEEEEECTTSCEECCEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEE
T ss_pred             EEEEEEEEEECC------------EEEEEEeCCCcEECCeeEecCCCCHHHHHHHHHHHhcCceEEEeeeeeeeeEEecC
Confidence            457788887643            577888888999999999999999999999999999999987 4443332 22222


Q ss_pred             ecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         129 YSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      .+...+...++|.+....+.+.+.           .|..++.|+|++++++++
T Consensus        72 ~~~~~~~~~~~f~~~~~~~~~~~~-----------~E~~~~~W~~~~e~~~~l  113 (134)
T 3i7u_A           72 KGERIFKTVKYYLMKYKEGEPRPS-----------WEVKDAKFFPIKEAKKLL  113 (134)
T ss_dssp             TTEEEEEEEEEEEEEEEEECCCCC-----------TTSSEEEEEEHHHHHHHB
T ss_pred             CCceEEEEEEEEEEEEcCCcCcCC-----------hhheEEEEEEHHHHhhhc
Confidence            222234456778887765544322           478899999999999876

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*

Probab=99.88  E-value=1.4e-22  Score=163.63  Aligned_cols=155  Identities=14%  Similarity=0.125  Sum_probs=102.3

Q ss_pred             CCCcccccceeeeeecCCccCcc-ccccccCCcccccccCC-------ccceEEEEEEecCCceEEEEeccCcEEEE--E
Q psy7748          10 TWGSSAWNLAATEVYGRPSTNLN-DFIELTQSDLKDDKYKS-------GYHASHCMIFAYNDDKIFATYTARANVLM--Q   79 (232)
Q Consensus        10 ~w~~~~~~~~~~~vy~~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~a~~~vi~~~~~~~v~~~~~~~~~vLl--~   79 (232)
                      +|..    ++++.+|+++|++++ +.+++|+|....+....       ...+++++++..++.       .+..+|+  |
T Consensus        16 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~av~v~~v~~~~~-------~~~~vlLv~q   84 (212)
T 2dsc_A           16 KQYI----ISEELISEGKWVKLEKTTYMDPTGKTRTWESVKRTTRKEQTADGVAVIPVLQRTL-------HYECIVLVKQ   84 (212)
T ss_dssp             CCEE----EEEEEEEECSSEEEEEEEEECTTSCEEEEEEEEETTCCTTSCSEEEEEEEEECTT-------SCCEEEEEEE
T ss_pred             CceE----eeEEEEeeCCEEEEEEEEEECCCCCEEEEEEEEeeccCCCCCCEEEEEEEEeCCC-------CCcEEEEEEe
Confidence            4776    999999999999999 99999999776655522       245666665544321       0123444  4


Q ss_pred             Eee---CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcccccccc
Q psy7748          80 MRF---DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKG  155 (232)
Q Consensus        80 ~R~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (232)
                      +|.   ++.|+||||++|+||++++||+||++||||+.+. ..++...+.....   .....++|.+.+.........  
T Consensus        85 ~R~~~~~~~welPgG~ve~gEs~~~aA~REl~EEtGl~~~~~~~l~~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~--  159 (212)
T 2dsc_A           85 FRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPGL---SNCTIHIVTVTINGDDAENAR--  159 (212)
T ss_dssp             EEGGGTEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEECCCEESCTTT---BCCEEEEEEEEEETTSGGGSS--
T ss_pred             ecCCCCCcEEECCccccCCCCCHHHHHHHHHHHHhCCCccceEEeccEEcCCCc---cCceEEEEEEEEeCccccccC--
Confidence            454   2589999999999999999999999999999987 5444333322221   223445555554332211000  


Q ss_pred             cccccCCCccceeeEeeeCccccccc
Q psy7748         156 ALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       156 ~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      .....+ +.|.+++.|+|++++.+++
T Consensus       160 ~~~~~~-~~E~~~~~w~~~~el~~~~  184 (212)
T 2dsc_A          160 PKPKPG-DGEFVEVISLPKNDLLQRL  184 (212)
T ss_dssp             CCCCCC-TTCCCEEEEEEGGGHHHHH
T ss_pred             CCCCCC-CCceEEEEEEEHHHHHHHH
Confidence            001112 3589999999999999876

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*

Probab=99.88  E-value=3.6e-23  Score=166.51  Aligned_cols=148  Identities=16%  Similarity=0.189  Sum_probs=96.7

Q ss_pred             CCCCcccccceeeeeecCCccCcc-ccccccCCcccccccCCccceEEEEEEecCCceEEEEeccCcEEEEEEee-----
Q psy7748           9 RTWGSSAWNLAATEVYGRPSTNLN-DFIELTQSDLKDDKYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMRF-----   82 (232)
Q Consensus         9 ~~w~~~~~~~~~~~vy~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~-----   82 (232)
                      .+|..    ++++.+|+++|++++ +.+.+|+|....+.+.....++++++++.++           ++|+.+|+     
T Consensus         4 ~~~~~----~~~~~~~~~~~~~~~~~~~~~p~G~~~~~~~~~~~~av~v~i~~~~~-----------~vLLvrr~r~~~~   68 (207)
T 1mk1_A            4 HDFET----ISSETLHTGAIFALRRDQVRMPGGGIVTREVVEHFGAVAIVAMDDNG-----------NIPMVYQYRHTYG   68 (207)
T ss_dssp             --CCE----EEEEEEEECSSEEEEEEEEC-----CEEEEEEEECCEEEEEECCTTS-----------EEEEEEEEETTTT
T ss_pred             CCcEE----EeEEEEEeCCEEEEEEEEEECCCCCEEEEEEEeCCCEEEEEEEcCCC-----------EEEEEEeecCCCC
Confidence            55887    999999999999999 9999999987766666666777777777553           45555442     


Q ss_pred             CCeeecceeecC-CCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCccccccccccccc
Q psy7748          83 DGYIGFPGGLVD-AGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSH  160 (232)
Q Consensus        83 ~g~w~lPgG~ve-~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (232)
                      +|.|+||||+++ +||++++||+||++||||+.+. ...+...+....   ......++|.+..........      ..
T Consensus        69 ~~~w~lPgG~ve~~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~------~~  139 (207)
T 1mk1_A           69 RRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPG---FSDESVRVYLATGLREVGRPE------AH  139 (207)
T ss_dssp             EEEEECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEECSCTT---TBCCCEEEEEEEEEEECCC----------
T ss_pred             CcEEEeCCccccCCCCCHHHHHHHHHHHHHCCcccccEEEEEEEcCCC---ccccEEEEEEEEccccCCCCC------CC
Confidence            368999999999 9999999999999999999987 544433332221   222244556665433222110      01


Q ss_pred             CCCccceeeEeeeCccccccc
Q psy7748         161 DYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       161 ~~~~E~~~~~wvpl~el~~~i  181 (232)
                      + +.|..++.|+|++++.+++
T Consensus       140 ~-~~E~~~~~Wv~~~el~~~~  159 (207)
T 1mk1_A          140 H-EEADMTMGWYPIAEAARRV  159 (207)
T ss_dssp             -------CEEEEEHHHHHHHH
T ss_pred             C-CCceEEEEEEEHHHHHHHH
Confidence            1 2588999999999999875

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A

Probab=99.87  E-value=3.2e-22  Score=161.22  Aligned_cols=149  Identities=19%  Similarity=0.084  Sum_probs=99.9

Q ss_pred             CCCcccccceeeeeecCCccCcc-cccc--ccCCc---ccccccCCccceEEEEEEecCCceEEEEeccCcEEEE--EEe
Q psy7748          10 TWGSSAWNLAATEVYGRPSTNLN-DFIE--LTQSD---LKDDKYKSGYHASHCMIFAYNDDKIFATYTARANVLM--QMR   81 (232)
Q Consensus        10 ~w~~~~~~~~~~~vy~~~~~~~~-~~~~--~~~~~---~~~~~~~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl--~~R   81 (232)
                      .|..    ++++++|++ |++++ +.+.  +|+|+   ...+.+.....++++++++++++          .+|+  |+|
T Consensus        15 ~~~~----~~~~~v~~g-~~~v~~~~~~~~~~~g~~~~~~~r~~~~~~~av~vl~~~~~~~----------~vLLvrq~R   79 (209)
T 1g0s_A           15 DVEI----IARETLYRG-FFSLDLYRFRHRLFNGQMSHEVRREIFERGHAAVLLPFDPVRD----------EVVLIEQIR   79 (209)
T ss_dssp             GEEE----EEEEEEEES-SSEEEEEEEEEBCTTSCBCCCEEEEEEECCCEEEEEEEETTTT----------EEEEEEEEC
T ss_pred             CcEE----EEEEEEEee-eEEEEEEEEEEEcCCCCcceEEEEEEEeCCCEEEEEEEECCCC----------EEEEEEeec
Confidence            4666    899999998 99999 7665  68874   33344455667888888875432          3344  556


Q ss_pred             e--------CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCccccc
Q psy7748          82 F--------DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEI  152 (232)
Q Consensus        82 ~--------~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (232)
                      .        ++.|+||||++|+||++++||+||++||||+.+. +..+...+...+   ......++|.+......... 
T Consensus        80 ~~~~~~~~~~~~welPgG~ve~gE~~~~aA~REl~EEtGl~~~~~~~l~~~~~~~g---~~~~~~~~f~a~~~~~~~~~-  155 (209)
T 1g0s_A           80 IAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLSFLASPG---GTSERSSIMVGEVDATTASG-  155 (209)
T ss_dssp             GGGGGGSSCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEEESCTT---TBCCEEEEEEEECCGGGCC--
T ss_pred             ccCCCCCCCCeEEEeCcccCCCCcCHHHHHHHHHHHHcCcccCcEEEeEEEecCCC---ccCcEEEEEEEEEccccccC-
Confidence            3        3679999999999999999999999999999987 554444332222   22345566776653211100 


Q ss_pred             ccccccccCCCccceeeEeeeCccccccc
Q psy7748         153 EKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       153 ~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                         .....+ +.|.+++.|+|++++.+++
T Consensus       156 ---~~~~~~-e~E~~~~~w~~~~el~~~i  180 (209)
T 1g0s_A          156 ---IHGLAD-ENEDIRVHVVSREQAYQWV  180 (209)
T ss_dssp             -----------CCSCEEEEEEHHHHHHHH
T ss_pred             ---CCCCCC-CCcEEEEEEEEHHHHHHHH
Confidence               000112 2588999999999999875

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A

Probab=99.86  E-value=5e-22  Score=157.87  Aligned_cols=143  Identities=13%  Similarity=0.170  Sum_probs=93.7

Q ss_pred             ceeeeeecCCccCcc-ccccc--cCCcccc--cccCCccceEEEEEEecCCceEEEEeccCcEEEE--EEe---------
Q psy7748          18 LAATEVYGRPSTNLN-DFIEL--TQSDLKD--DKYKSGYHASHCMIFAYNDDKIFATYTARANVLM--QMR---------   81 (232)
Q Consensus        18 ~~~~~vy~~~~~~~~-~~~~~--~~~~~~~--~~~~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl--~~R---------   81 (232)
                      ++++.+|. +|++++ +.+.+  |+|....  ........++++++++.+.+          .+|+  ++|         
T Consensus         8 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~r~~~~~~~av~v~~~~~~~~----------~vlLv~~~r~~~~~~~~~   76 (191)
T 3o6z_A            8 IKDKILSD-NYFTLHNITYDLTRKDGEVIRHKREVYDRGNGATILLYNTKKK----------TVVLIRQFRVATWVNGNE   76 (191)
T ss_dssp             EEEEEEEC-SSSEEEEEEEEEECTTSCEEEEEEEEEECCCEEEEEEEETTTT----------EEEEEEEECHHHHTTTCT
T ss_pred             eEeEEEec-CcEEEEEEEEEEECCCCCEEEEEEEEEecCCEEEEEEEECCCC----------EEEEEEcCCccccccCCC
Confidence            77777766 999999 77754  8886422  23344556777777775433          3344  344         


Q ss_pred             eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCccccccccccccc
Q psy7748          82 FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSH  160 (232)
Q Consensus        82 ~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (232)
                      .++.|+||||++| ||++++||+||++||||+.+. ...+...+....   ......++|.+........... +   ..
T Consensus        77 ~~~~w~lPgG~ve-gE~~~~aa~REl~EEtG~~~~~~~~l~~~~~~~~---~~~~~~~~f~~~~~~~~~~~~~-~---~~  148 (191)
T 3o6z_A           77 SGQLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFELYMSPG---GVTELIHFFIAEYSDNQRANAG-G---GV  148 (191)
T ss_dssp             TCEEEECEEEECC-SSCHHHHHHHHHHHHC-CCCSCEEEEEEEESCTT---TBCCEEEEEEEECCTTCC-----------
T ss_pred             CCeEEEecceEeC-CCCHHHHHHHHHHHHhCCccCcEEEEEEEEeCCC---ccCcEEEEEEEEEcccccccCC-C---CC
Confidence            3468999999999 999999999999999999987 554444333221   2334566777765432211100 0   01


Q ss_pred             CCCccceeeEeeeCccccccc
Q psy7748         161 DYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       161 ~~~~E~~~~~wvpl~el~~~i  181 (232)
                        +.|.+++.|+|++++.+++
T Consensus       149 --~~E~~~~~w~~~~el~~~~  167 (191)
T 3o6z_A          149 --EDEAIEVLELPFSQALEMI  167 (191)
T ss_dssp             ---CCSSEEEEEEHHHHHHHH
T ss_pred             --CCcEEEEEEEEHHHHHHHH
Confidence              2589999999999999876

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A

Probab=99.85  E-value=1e-21  Score=152.92  Aligned_cols=138  Identities=21%  Similarity=0.179  Sum_probs=85.4

Q ss_pred             CCCCCCcccccceeeeeecCCccCccccccccCCcccccccCCccceEEEEEEecCCceEEEEeccCcEEEEEEe-----
Q psy7748           7 GDRTWGSSAWNLAATEVYGRPSTNLNDFIELTQSDLKDDKYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMR-----   81 (232)
Q Consensus         7 ~~~~w~~~~~~~~~~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R-----   81 (232)
                      |+.+|..    ++++.+|+++|++++..        ..+.+..++.++++++++ ++           ++|+.+|     
T Consensus         2 ~~~~~~~----~~~~~~~~~~~~~v~~~--------~~~~~~~~~~~v~vii~~-~~-----------~vLL~~~~r~~~   57 (170)
T 1v8y_A            2 GRVYYGG----VERTYLYRGRILNLALE--------GRYEIVEHKPAVAVIALR-EG-----------RMLFVRQMRPAV   57 (170)
T ss_dssp             -------------CEEEEECSSEEEEEE--------TTEEEEEECCEEEEEEEE-TT-----------EEEEEECCBTTT
T ss_pred             CCCceEE----EeEEEEEECCeEEEEEE--------eeEEEEecCCeEEEEEEE-CC-----------EEEEEEEEeCCC
Confidence            5567888    99999999999999822        233334455678888877 53           4455444     


Q ss_pred             eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCccccccccccccc
Q psy7748          82 FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSH  160 (232)
Q Consensus        82 ~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (232)
                      ++|.|+||||++++|||+++||+||++||||+ +. ...+...+..   ....+...++|.+.........        .
T Consensus        58 ~~~~w~lPgG~ve~gEs~~~aa~REl~EEtGl-~~~~~~l~~~~~~---~~~~~~~~~~f~~~~~~~~~~~--------~  125 (170)
T 1v8y_A           58 GLAPLEIPAGLIEPGEDPLEAARRELAEQTGL-SGDLTYLFSYFVS---PGFTDEKTHVFLAENLKEVEAH--------P  125 (170)
T ss_dssp             TBCCBBCSEEECCTTCCHHHHHHHHHHHHHSE-EEEEEEEEEEESC---TTTBCCEEEEEEEEEEEECC-----------
T ss_pred             CCCEEECCccccCCCCCHHHHHHHHHHHHHCC-CcCceeeEEEecC---CCccccEEEEEEEEeccccCCC--------C
Confidence            24789999999999999999999999999999 76 5444333221   1122345566666543321111        1


Q ss_pred             CCCccceeeEeeeCccccccc
Q psy7748         161 DYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       161 ~~~~E~~~~~wvpl~el~~~i  181 (232)
                      + +.|..++.|+|++++.+++
T Consensus       126 ~-~~E~~~~~W~~~~el~~~~  145 (170)
T 1v8y_A          126 D-EDEAIEVVWMRPEEALERH  145 (170)
T ss_dssp             ------CEEEEECHHHHHHHH
T ss_pred             C-CCceEEEEEEEHHHHHHHH
Confidence            1 2578899999999999875

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*

Probab=99.84  E-value=2.9e-20  Score=142.59  Aligned_cols=119  Identities=18%  Similarity=0.084  Sum_probs=79.7

Q ss_pred             ceEEEEEEecCCceEEEEeccCcEEEEEEee--CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeece-eeee
Q psy7748          52 HASHCMIFAYNDDKIFATYTARANVLMQMRF--DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSD-LVCI  127 (232)
Q Consensus        52 ~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~-~~~~  127 (232)
                      ++|++++++..  ++..+.+++.++|+.+|.  +|.|.||||++|+|||+.+||+||++||||+.+. ....... ....
T Consensus         4 ra~G~iifr~~--~~~~~~n~~~e~LL~~r~~~~~~W~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~   81 (155)
T 3u53_A            4 RACGLIIFRRC--LIPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTIIEGFKRELN   81 (155)
T ss_dssp             CEEEEEEEEEC--CCSSSSSCSEEEEEEEESSSSCCEECSEEECCSSCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEE
T ss_pred             eEeEEEEEccc--cccceeCCCcEEEEEEecCCCCCEECCeeeccCCCCHHHHHHHHHHHHHCCccccceeeeeEeeeee
Confidence            47899998742  111223455677777773  4789999999999999999999999999999987 4433222 2222


Q ss_pred             eecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         128 HYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      ..........++|.+..........         .+.|..++.|++++++.+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~E~~~~~W~~~~ea~~~~  126 (155)
T 3u53_A           82 YVARNKPKTVIYWLAEVKDYDVEIR---------LSHEHQAYRWLGLEEACQLA  126 (155)
T ss_dssp             EEETTEEEEEEEEEEEESCTTCCCC---------CCTTEEEEEEECHHHHHHHH
T ss_pred             cCCCcceeEEEEEEEEEeccCCccC---------CCcceeEEEEeEHHHHHHHc
Confidence            2233344555566665543322111         12488899999999988875

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*

Probab=99.80  E-value=9.9e-19  Score=130.83  Aligned_cols=113  Identities=18%  Similarity=0.158  Sum_probs=77.8

Q ss_pred             cceEEEEEEecCCceEEEEeccCcEEEEEEeeC--CeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceee-eceeee
Q psy7748          51 YHASHCMIFAYNDDKIFATYTARANVLMQMRFD--GYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVK-DSDLVC  126 (232)
Q Consensus        51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~--g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~-~~~~~~  126 (232)
                      ..++++++++.+++        ++++|+++|..  |.|.||||++++||++++||+||++||||+.+. ..+. ......
T Consensus         3 ~~~~~~vi~~~~~~--------~~~vLl~~r~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~   74 (138)
T 1ktg_A            3 VKAAGLVIYRKLAG--------KIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETL   74 (138)
T ss_dssp             EEEEEEEEEEEETT--------EEEEEEEEESSTTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEE
T ss_pred             eEEEEEEEEEecCC--------CcEEEEEEccCCCCcEeCCccccCCCCCHHHHHHHHHHHHHCCCccceEEeccccceE
Confidence            35677777775321        24567777743  599999999999999999999999999999776 4333 111122


Q ss_pred             eeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         127 IHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      .+.....+...++|.+..........          +.|..++.|+|++++.++.
T Consensus        75 ~~~~~~~~~~~~~f~~~~~~~~~~~~----------~~e~~~~~W~~~~el~~~~  119 (138)
T 1ktg_A           75 FYEAKGKPKSVKYWLAKLNNPDDVQL----------SHEHQNWKWCELEDAIKIA  119 (138)
T ss_dssp             EEEETTEEEEEEEEEEEECSCCCCCC----------CTTEEEEEEECHHHHHHHH
T ss_pred             EEEeCCCceEEEEEEEEecCCcccCC----------CchhcEeEeccHHHHHHhh
Confidence            22222346777888887764321111          2488899999999999864

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}

Probab=99.80  E-value=5.4e-19  Score=135.77  Aligned_cols=124  Identities=15%  Similarity=0.100  Sum_probs=79.5

Q ss_pred             cccCCccccccc-CCccceEEEEEEecCCceEEEEeccCcEEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHh
Q psy7748          36 ELTQSDLKDDKY-KSGYHASHCMIFAYNDDKIFATYTARANVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEE  110 (232)
Q Consensus        36 ~~~~~~~~~~~~-~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EE  110 (232)
                      .++++....+.. ...+.++++++++ +           ++||+++|.    +|.|+||||++++||++.+||+||++||
T Consensus        13 ~~~~~~p~~m~~~~~~~~~v~~vi~~-~-----------~~vLL~~r~~~~~~~~w~lPgG~ve~gEs~~~aa~REl~EE   80 (157)
T 4dyw_A           13 EAQTQGPGSMQHTEQPRVGCGAAIVR-D-----------GRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEE   80 (157)
T ss_dssp             -------------CCCEEEEEEEEEE-T-----------TEEEEEEECSSSSTTCEECCEEECCTTCCHHHHHHHHHHHH
T ss_pred             eccCCCCCCCCCCCCceeEEEEEEEE-C-----------CEEEEEEecCCCCCCEEECCcccCCCCCCHHHHHHHHHHHH
Confidence            344444444444 4456667777777 3           256777763    5899999999999999999999999999


Q ss_pred             hCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         111 INLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       111 tGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      ||+.+. ..++...... ......+...++|.+....+.+...         .+.|..++.|++++++.+.+
T Consensus        81 tGl~~~~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~~~~~~~~---------~~~E~~~~~W~~~~el~~~l  142 (157)
T 4dyw_A           81 LGIALERATLLCVVDHI-DAANGEHWVAPVYLAHAFSGEPRVV---------EPDRHEALGWFALDDLPQPL  142 (157)
T ss_dssp             HSCEEESCEEEEEEEEE-ETTTTEEEEEEEEEESEEESCCCCS---------CTTTEEEEEEEETTSCCSSB
T ss_pred             HCcccccCcEEEEEEee-ccCCCcEEEEEEEEEEEcCCCcccC---------CCCcEeEEEEECHHHccccc
Confidence            999987 4444332222 2123446677778876654433221         12478899999999999865

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}

Probab=99.79  E-value=7.3e-19  Score=142.30  Aligned_cols=134  Identities=14%  Similarity=0.116  Sum_probs=75.0

Q ss_pred             ccccccCCcccccccCCccceEEEEEEecCCceEEEEeccCcEEEEEEe---e---------------------------
Q psy7748          33 DFIELTQSDLKDDKYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMR---F---------------------------   82 (232)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R---~---------------------------   82 (232)
                      ..+..|+|....+.+.....++++++++.+.+.++        ++.|+|   +                           
T Consensus        18 ~~~~~~~G~~~~~e~v~~~~aV~vl~~~~~~~~vl--------LvrQ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (218)
T 3q91_A           18 LYFQSMNGAQKSWDFMKTHDSVTVLLFNSSRRSLV--------LVKQFRPAVYAGEVERRFPGSLAAVDQDGPRELQPAL   89 (218)
T ss_dssp             -----------------CCCEEEEEEEEGGGTEEE--------EEEEECHHHHHHHTC----------------------
T ss_pred             EEEECCCCCEEEEEEEEcCCeEEEEEEECCCCEEE--------EEEcccccccccccccccccccccccccccccccccc
Confidence            46778899888888877788999999986433221        233445   2                           


Q ss_pred             ----CCeeecceeecCC-CCCHHHHHhHHHHHhhCCCC--c-ceeeeceeeeeeecCCcEEEEEEEEEEeecCccccccc
Q psy7748          83 ----DGYIGFPGGLVDA-GESPLEALNRELNEEINLNP--K-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEK  154 (232)
Q Consensus        83 ----~g~w~lPgG~ve~-gEs~~~aa~REl~EEtGl~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (232)
                          ++.|+||||++|+ |||+++||+||++||||+.+  . +..+...+.....   ....+++|.+..........  
T Consensus        90 ~~~~~~~welPgG~ve~~gEs~~eaA~REl~EEtGl~~~~~~l~~l~~~~~~~g~---~~~~~~~f~a~~~~~~~~~~--  164 (218)
T 3q91_A           90 PGSAGVTVELCAGLVDQPGLSLEEVACKEAWEECGYHLAPSDLRRVATYWSGVGL---TGSRQTMFYTEVTDAQRSGP--  164 (218)
T ss_dssp             ---CCEEEECEEEECCSSSCCHHHHHHHHHHHHHCBCCCGGGCEEEEEEEEC------CCEEEEEEEEEECGGGBCC---
T ss_pred             ccCCCeEEECCcceeCCCCCCHHHHHHHHHHHHhCCccccCceEEEEEEecCCCc---cceEEEEEEEEECCcccccC--
Confidence                4689999999999 99999999999999999998  4 4444433332222   23455667776543211000  


Q ss_pred             ccccccCCCccceeeEeeeCccccccc
Q psy7748         155 GALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       155 ~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                       .....+ +.|.+++.|+|++++.+++
T Consensus       165 -~~~~~d-~~E~~ev~wv~l~el~~~i  189 (218)
T 3q91_A          165 -GGGLVE-EGELIEVVHLPLEGAQAFA  189 (218)
T ss_dssp             ----------CCEEEEEEEGGGHHHHH
T ss_pred             -CCCCCC-CCcEEEEEEEEHHHHHHHH
Confidence             001112 2589999999999999875

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}

Probab=99.79  E-value=2.2e-18  Score=130.81  Aligned_cols=112  Identities=17%  Similarity=0.075  Sum_probs=76.5

Q ss_pred             cceEEEEEEecCCceEEEEeccCcEEEEEEee-CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-c-eeeeceeeee
Q psy7748          51 YHASHCMIFAYNDDKIFATYTARANVLMQMRF-DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-Y-KVKDSDLVCI  127 (232)
Q Consensus        51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~-~~~~~~~~~~  127 (232)
                      +.++.++++...+        ..+++|+++|. +|.|+||||++++|||+.+||+||++||||+.+. . ..+...+...
T Consensus         5 ~~~v~vvi~~~~~--------~~~~vLl~~r~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~   76 (149)
T 3son_A            5 PFQVLVIPFIKTE--------ANYQFGVLHRTDADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKMYSLDSHASIP   76 (149)
T ss_dssp             CCEEEEEEEEECS--------SSEEEEEEEESSSSCEECEEEECCTTCCHHHHHHHHHHHHHTCCSCCCEEEEEEEEEEE
T ss_pred             ceEEEEEEEEecC--------CCeEEEEEEEcCCCCEeCCccccCCCCCHHHHHHHHHHHHhCCCcccceEEEEeeeccc
Confidence            3456666664321        23567888875 4899999999999999999999999999999987 3 1222222111


Q ss_pred             ee----cCCcEEEEEEEEEEeec--CcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         128 HY----SQSKKIILHFYALQVEK--TDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       128 ~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      ..    ....+...++|.+.+..  +.+..           +.|..++.|+|++++.+++
T Consensus        77 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~-----------~~E~~~~~W~~~~el~~~~  125 (149)
T 3son_A           77 NFHFSFNKPYVVPEYCFAIDLTSCSYQVTL-----------SLEHSELRWVSYESAIQLL  125 (149)
T ss_dssp             GGGTCSSSCSEEEEEEEEEECTTTGGGCCC-----------CTTEEEEEEECHHHHHHHC
T ss_pred             ceeeccCCceEeEEEEEEEEcCCCCCcccC-----------CCceeeEEEeCHHHHHHHh
Confidence            11    22345666788887763  22211           1478899999999999875

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*

Probab=99.78  E-value=1.5e-18  Score=127.77  Aligned_cols=105  Identities=17%  Similarity=0.086  Sum_probs=75.7

Q ss_pred             ceEEEEEEecCCceEEEEeccCcEEEEEEeeCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeec
Q psy7748          52 HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYS  130 (232)
Q Consensus        52 ~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~  130 (232)
                      .++++++++.+           +++|+++|..|.|+||||++++||++.+||.||++||||+.+. ...+.... +  ..
T Consensus         3 ~~~~~vi~~~~-----------~~vLl~~r~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~-~--~~   68 (126)
T 1vcd_A            3 LGAGGVVFNAK-----------REVLLLRDRMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTR-Y--VN   68 (126)
T ss_dssp             EEEEEEEECTT-----------SCEEEEECTTSCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEE-E--EC
T ss_pred             eEEEEEEEcCC-----------CEEEEEEECCCCccCCcCcCCCCCCHHHHHHHHHHHhhCcEeeeccEEeEEE-E--ec
Confidence            46777777765           3567788877999999999999999999999999999999987 44333221 1  11


Q ss_pred             CCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         131 QSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      ...+...++|.+....+... .          +.|..++.|+|++++.+++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~-~----------~~e~~~~~w~~~~el~~~~  108 (126)
T 1vcd_A           69 PKGVEREVHWFLMRGEGAPR-L----------EEGMTGAGWFSPEEARALL  108 (126)
T ss_dssp             TTSCEEEEEEEEEEEESCCC-C----------CTTCCEEEEECHHHHHHHB
T ss_pred             CCceEEEEEEEEEEcCCCCC-C----------CcceeeeEEcCHHHHHHhh
Confidence            23345556677665443311 1          2478899999999998865

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}

Probab=99.78  E-value=4.7e-18  Score=127.54  Aligned_cols=111  Identities=17%  Similarity=0.189  Sum_probs=76.0

Q ss_pred             CccceEEEEEEecCCceEEEEeccCcE--EEEEEee--CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeece
Q psy7748          49 SGYHASHCMIFAYNDDKIFATYTARAN--VLMQMRF--DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSD  123 (232)
Q Consensus        49 ~~~~a~~~vi~~~~~~~v~~~~~~~~~--vLl~~R~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~  123 (232)
                      ....++++++++.+.         ++.  +|+++|.  ++.|+||||++++|||+.+||+||++||||+.+. ..+....
T Consensus         7 ~p~~~v~~vi~~~~~---------~~~~~vLl~~r~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~   77 (139)
T 2yyh_A            7 TPLLATDVIIRLWDG---------ENFKGIVLIERKYPPVGLALPGGFVEVGERVEEAAAREMREETGLEVRLHKLMGVY   77 (139)
T ss_dssp             CCEEEEEEEEEEEET---------TEEEEEEEEEECSSSCSEECCEEECCTTCCHHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_pred             CCeEEEEEEEEEEcC---------CCcEEEEEEEecCCCCcEECccccCCCCCCHHHHHHHHHHHHHCCCcccceEEEEE
Confidence            445667777776221         134  6777773  3569999999999999999999999999999987 4433322


Q ss_pred             eeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccc--ccc
Q psy7748         124 LVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMG--DGF  181 (232)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~--~~i  181 (232)
                       .........+...++|.+.. .+.+..           +.|..++.|+|++++.  .+.
T Consensus        78 -~~~~~~~~~~~~~~~f~~~~-~~~~~~-----------~~e~~~~~W~~~~el~~~~l~  124 (139)
T 2yyh_A           78 -SDPERDPRAHVVSVVWIGDA-QGEPKA-----------GSDAKKVKVYRLEEIPLDKLV  124 (139)
T ss_dssp             -CCTTSCTTSCEEEEEEEEEE-ESCCCC-----------CTTEEEEEEECTTSCCGGGBC
T ss_pred             -CCCCcCCCceEEEEEEEEec-CCccCC-----------CCCcceEEEEEHHHCCHhhcC
Confidence             11111223466777888876 333221           2478899999999999  554

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A

Probab=99.77  E-value=1.1e-18  Score=140.04  Aligned_cols=111  Identities=17%  Similarity=0.189  Sum_probs=79.1

Q ss_pred             CCccceEEEEEEecCCceEEEEeccCcEEEEEEee-CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceee
Q psy7748          48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMRF-DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLV  125 (232)
Q Consensus        48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~  125 (232)
                      ...+.++++++++ +           ++||+++|. +|.|+||||++++|||+.+||+||++||||+.+. ..++.....
T Consensus        65 ~~~~~~v~~vv~~-~-----------~~vLLv~r~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~v~~~~~l~~~~~  132 (205)
T 3q1p_A           65 QTPKVDIRAVVFQ-N-----------EKLLFVKEKSDGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKLLAIFDK  132 (205)
T ss_dssp             CCCEEEEEEEEEE-T-----------TEEEEEEC---CCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEH
T ss_pred             CCCcceEEEEEEE-C-----------CEEEEEEEcCCCcEECCcCccCCCCCHHHHHHHHHHHHHCCccccceEEEEEec
Confidence            4445667777776 3           256777775 7899999999999999999999999999999987 444433322


Q ss_pred             eee--ecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         126 CIH--YSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       126 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      ...  .....+.+.++|.+....+.+..           +.|..++.|+|+++++++.
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~E~~~~~w~~~~el~~l~  179 (205)
T 3q1p_A          133 EKHQPSPSATHVYKIFIGCEIIGGEKKT-----------SIETEEVEFFGENELPNLS  179 (205)
T ss_dssp             HHHSCCCCSSCEEEEEEEEEEEEECCCC-----------CTTSCCEEEECTTSCCCBC
T ss_pred             cccCCCCCCceEEEEEEEEEecCCccCC-----------CCcceEEEEEeHHHhhhcC
Confidence            111  12234677788888876544322           1488999999999999874

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}

Probab=99.77  E-value=3.5e-18  Score=131.26  Aligned_cols=109  Identities=20%  Similarity=0.124  Sum_probs=75.3

Q ss_pred             cceEEEEEEecCCceEEEEeccCcEEEEEEe-eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceee---
Q psy7748          51 YHASHCMIFAYNDDKIFATYTARANVLMQMR-FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLV---  125 (232)
Q Consensus        51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R-~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~---  125 (232)
                      +.++++++++ +           ++||+.+| .+|.|+||||++++|||+.+||+||++||||+.+. ...+.....   
T Consensus         6 ~~~v~~vi~~-~-----------~~vLL~~r~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~   73 (159)
T 3f6a_A            6 HFTVSVFIVC-K-----------DKVLLHLHKKAKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYNPIDINLKKSC   73 (159)
T ss_dssp             CEEEEEEEEE-T-----------TEEEEEECSSSCCEECEEEECCTTCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHH
T ss_pred             eEEEEEEEEE-C-----------CEEEEEEcCCCCeEECCccCccCCCCHHHHHHHHHHHHhCCCceecccccccccccc
Confidence            4566677776 3           24566666 45899999999999999999999999999999987 443321100   


Q ss_pred             ---------------eeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         126 ---------------CIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       126 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                                     ..........+.++|.+....+.....          +.|..++.|+|++++.++.
T Consensus        74 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~----------~~E~~~~~W~~~~el~~~~  134 (159)
T 3f6a_A           74 DLSGEKLLINPIHTILGDVSPNHSHIDFVYYATTTSFETSPE----------IGESKILKWYSKEDLKNAH  134 (159)
T ss_dssp             HHTTCEEECCCSEEEEECSSSSSCEEEEEEEEECSCSCCCCC----------TTSCCCEEEECSSSSTTCS
T ss_pred             cccccccccCccccccccCCCCceEEEEEEEEEeCCCCcCCC----------CCcccceEEeeHHHHhhCc
Confidence                           000011223555778887765544332          2588899999999999874

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}

Probab=99.77  E-value=2.7e-18  Score=131.32  Aligned_cols=111  Identities=18%  Similarity=0.218  Sum_probs=77.5

Q ss_pred             CCccceEEEEEEecCCceEEEEeccCcEEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeec
Q psy7748          48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDS  122 (232)
Q Consensus        48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~  122 (232)
                      ......+++++++.+           +++|+++|.    +|.|+||||+++.||++++||+||++||||+.+. ..++..
T Consensus        17 ~~~~~~v~~~i~~~~-----------~~vLl~~r~~~~~~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~   85 (156)
T 3gg6_A           17 KNVCYVVLAVFLSEQ-----------DEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEAGLHCEPETLLSV   85 (156)
T ss_dssp             TTCEEEEEEECBCTT-----------SEEEEEECCCTTSTTCEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEE
T ss_pred             CceEEEEEEEEEeCC-----------CEEEEEEecCCCCCCEEECCeeeccCCCCHHHHHHHHHHHhhCceeEeeeEEEE
Confidence            344455666666655           356777773    4899999999999999999999999999999987 444332


Q ss_pred             eeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccccC
Q psy7748         123 DLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFR  182 (232)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~  182 (232)
                      ..     . ..+...++|.+....+......       ..+.|..++.|+|++++++++.
T Consensus        86 ~~-----~-~~~~~~~~f~~~~~~~~~~~~~-------~~~~E~~~~~W~~~~el~~~~~  132 (156)
T 3gg6_A           86 EE-----R-GPSWVRFVFLARPTGGILKTSK-------EADAESLQAAWYPRTSLPTPLR  132 (156)
T ss_dssp             EE-----S-STTEEEEEEEEEEEEECCCCGG-------GCSSSCSEEEEEETTSCCSSBS
T ss_pred             Ec-----C-CCCEEEEEEEEEeeCCeeccCC-------CCCcceeeeEEEcHHHCccccc
Confidence            21     1 2234566777776544332211       1125888999999999999863

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*

Probab=99.77  E-value=1.3e-18  Score=133.24  Aligned_cols=111  Identities=20%  Similarity=0.273  Sum_probs=78.4

Q ss_pred             CccceEEEEEEecCCceEEEEeccCcEEEEEEee--------CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-cee
Q psy7748          49 SGYHASHCMIFAYNDDKIFATYTARANVLMQMRF--------DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKV  119 (232)
Q Consensus        49 ~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~--------~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~  119 (232)
                      ..+.++++++++.++           .+|+++|.        +|.|+||||++++||++.+||+||++||||+.+. ...
T Consensus        11 ~~~~~~~~vi~~~~~-----------~vLl~~r~~~~~~~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~   79 (159)
T 1sjy_A           11 VELRAAGVVLLNERG-----------DILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPVKF   79 (159)
T ss_dssp             CCEEEEEEEEBCTTC-----------CEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEEEE
T ss_pred             eEEEeEEEEEEeCCC-----------CEEEEEecccCcCCCCCCeEECCccccCCCCCHHHHHHHHHHHHHCccceeeEE
Confidence            345667777776553           45666664        3799999999999999999999999999999987 444


Q ss_pred             eeceeeeeeecCCcEEEEEEEEEEeecCc-ccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         120 KDSDLVCIHYSQSKKIILHFYALQVEKTD-VLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      +......  .....+...++|.+....+. +..        . .+.|..++.|+|++++.+++
T Consensus        80 l~~~~~~--~~~~~~~~~~~f~~~~~~~~~~~~--------~-~~~E~~~~~W~~~~el~~~~  131 (159)
T 1sjy_A           80 LGAYLGR--FPDGVLILRHVWLAEPEPGQTLAP--------A-FTDEIAEASFVSREDFAQLY  131 (159)
T ss_dssp             EEEEEEE--CTTSCEEEEEEEEEEECSSCCCCC--------C-CCSSEEEEEEECHHHHHHHH
T ss_pred             EEEEecc--cCCCceEEEEEEEEEccCCCcccc--------C-CCCceeEEEEecHHHHHHhh
Confidence            4332221  11125677888888775443 221        0 12588999999999998864

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}

Probab=99.77  E-value=7.6e-18  Score=128.51  Aligned_cols=107  Identities=21%  Similarity=0.128  Sum_probs=76.9

Q ss_pred             ccceEEEEEEecCCceEEEEeccCcEEEEEEee------CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeec
Q psy7748          50 GYHASHCMIFAYNDDKIFATYTARANVLMQMRF------DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDS  122 (232)
Q Consensus        50 ~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~------~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~  122 (232)
                      .+.++++++++.++           .+|+++|.      +|.|+||||++++||++.+||+||++||||+.+. ..++..
T Consensus         7 ~~~~v~~vi~~~~~-----------~vLL~~r~~~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~   75 (153)
T 3grn_A            7 YIISVYALIRNEKG-----------EFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETGITMVPGDIAGQ   75 (153)
T ss_dssp             EEEEEEEEEECTTC-----------CEEEEEECTTCSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCSEEEE
T ss_pred             eEEEEEEEEEcCCC-----------cEEEEEEcCCCCCCCCeEECceeecCCCCCHHHHHHhhhhhhhCcEeecceEEEE
Confidence            45667777777553           45666663      3899999999999999999999999999999988 444333


Q ss_pred             eeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         123 DLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      ..   ..........++|.+....+.+..           +.|..++.|++++++.++.
T Consensus        76 ~~---~~~~~~~~~~~~~~~~~~~~~~~~-----------~~e~~~~~W~~~~el~~~~  120 (153)
T 3grn_A           76 VN---FELTEKKVIAIVFDGGYVVADVKL-----------SYEHIEYSWVSLEKILGME  120 (153)
T ss_dssp             EE---EECSSCEEEEEEEEEEECCCCCCC-----------CTTEEEEEEECHHHHTTCS
T ss_pred             EE---EecCCceEEEEEEEEEecCCcEec-----------CCCcceEEEEEHHHhhhcc
Confidence            22   222234566777777665443322           1478899999999998863

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}

Probab=99.76  E-value=2e-18  Score=130.85  Aligned_cols=110  Identities=19%  Similarity=0.133  Sum_probs=70.0

Q ss_pred             CccceEEEEEEecCCceEEEEeccCcEEEE-EEeeC---CeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeece
Q psy7748          49 SGYHASHCMIFAYNDDKIFATYTARANVLM-QMRFD---GYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSD  123 (232)
Q Consensus        49 ~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl-~~R~~---g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~  123 (232)
                      +++.++++++++.++.+          +|+ ++|.+   +.|+||||++|+|||+++||+||++||||+.+. ...+...
T Consensus         3 ~~~~~v~vi~~~~~~~v----------LLv~~~r~~~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~   72 (145)
T 2w4e_A            3 RGPRAVFILPVTAQGEA----------VLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGGAASEWVPLPGF   72 (145)
T ss_dssp             CCCEEEEEEEEETTSEE----------EEEEEEETTTTEEEEECEEEECCTTCCHHHHHHHHHHHHHCEECSEEEECCCB
T ss_pred             eeCCEEEEEEEcCCCEE----------EEEEEEecCCCCCEEEeCCccCCCCCCHHHHHHHHHHHhhCCccCeEEEEecC
Confidence            34567888888766432          233 34433   489999999999999999999999999999987 5444333


Q ss_pred             eeeeeecCCcEEEEEEEEEE-eecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         124 LVCIHYSQSKKIILHFYALQ-VEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      +...   .......++|.+. ...+.....          +.|..++.|+|++++.+++
T Consensus        73 ~~~~---~~~~~~~~~f~~~~~~~~~~~~~----------~~E~~~~~w~~~~el~~~~  118 (145)
T 2w4e_A           73 YPQP---SISGVVFYPLLALGVTLGAAQLE----------DTETIERVVLPLAEVYRML  118 (145)
T ss_dssp             BSCT---TTCCCEEEEEEEEEEEEC------------------CEEEEEEEHHHHHHHH
T ss_pred             cCCC---CccCceEEEEEEEecccCCCCCC----------CCCeEEEEEEeHHHHHHHH
Confidence            2211   1122344555554 322211111          2588999999999999874

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}

Probab=99.76  E-value=2.8e-18  Score=137.70  Aligned_cols=97  Identities=16%  Similarity=0.201  Sum_probs=71.0

Q ss_pred             cEEEEEEeeCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeee--eeecCCcEEEEEEEEEEeecCccc
Q psy7748          74 ANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVC--IHYSQSKKIILHFYALQVEKTDVL  150 (232)
Q Consensus        74 ~~vLl~~R~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  150 (232)
                      ++||+++|..|.|+||||++++|||+.+||+||++||||+.+. ..++......  .......+.+.++|.+....+.+.
T Consensus        81 ~~vLLvrr~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (206)
T 3o8s_A           81 DKILLVQENDGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAILDKHKNNPAKSAHRVTKVFILCRLLGGEFQ  160 (206)
T ss_dssp             TEEEEEECTTSCEECSEEECCTTSCHHHHHHHHHHHHHCEEEEEEEEEEEEEHHHHCC-----CEEEEEEEEEEEEECCC
T ss_pred             CEEEEEEecCCeEECCeeccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEeccccCCCCCCceEEEEEEEEEecCCeec
Confidence            3678888888999999999999999999999999999999987 4444332211  111112356778888887654432


Q ss_pred             ccccccccccCCCccceeeEeeeCccccccc
Q psy7748         151 EIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       151 ~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      .           +.|..++.|+|+++++++.
T Consensus       161 ~-----------~~E~~~~~w~~~~el~~l~  180 (206)
T 3o8s_A          161 P-----------NSETVASGFFSLDDLPPLY  180 (206)
T ss_dssp             C-----------CSSCSEEEEECTTSCCCBC
T ss_pred             C-----------CCCceEEEEEeHHHhhhcc
Confidence            2           1478899999999999874

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}

Probab=99.76  E-value=1.9e-17  Score=131.01  Aligned_cols=101  Identities=17%  Similarity=0.185  Sum_probs=72.7

Q ss_pred             ccceEEEEEEecCCceEEEEeccCcEEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeecee
Q psy7748          50 GYHASHCMIFAYNDDKIFATYTARANVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDL  124 (232)
Q Consensus        50 ~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~  124 (232)
                      .+.++++++++ +           +.||+++|.    .|.|+||||++++|||+++||+||++||||+.+. ..+... +
T Consensus        39 ~~~~v~~ii~~-~-----------~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~-~  105 (189)
T 3cng_A           39 PKVIVGCIPEW-E-----------NKVLLCKRAIAPYRGKWTLPAGFMENNETLVQGAARETLEEANARVEIRELYAV-Y  105 (189)
T ss_dssp             CEEEEEEEEEE-T-----------TEEEEEEESSSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEE-E
T ss_pred             CceEEEEEEEe-C-----------CEEEEEEccCCCCCCeEECceeeccCCCCHHHHHHHHHHHHHCCccccceeEEE-E
Confidence            34466666665 3           256777773    5799999999999999999999999999999987 433322 2


Q ss_pred             eeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccc
Q psy7748         125 VCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMG  178 (232)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~  178 (232)
                      .+.    ..+...++|.+....+.+..           +.|..++.|++++++.
T Consensus       106 ~~~----~~~~~~~~f~~~~~~~~~~~-----------~~E~~~~~W~~~~el~  144 (189)
T 3cng_A          106 SLP----HISQVYMLFRAKLLDLDFFP-----------GIESLEVRLFGEQEIP  144 (189)
T ss_dssp             EEG----GGTEEEEEEEEEECCSCCCC-----------CTTEEEEEEECTTTCC
T ss_pred             ecC----CCcEEEEEEEEEeCCCccCC-----------CccceeEEEECHHHcC
Confidence            221    22466777887765443221           2478899999999998

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1

Probab=99.75  E-value=7.5e-18  Score=127.37  Aligned_cols=111  Identities=14%  Similarity=0.010  Sum_probs=76.5

Q ss_pred             ccceEEEEEEecCCceEEEEeccCcEEEEEEeeCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeee
Q psy7748          50 GYHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIH  128 (232)
Q Consensus        50 ~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~  128 (232)
                      .+.++++++++.+.          +.+|+++|.+|.|.||||++++||++.+||+||++||||+.+. ...+........
T Consensus        17 ~~~~~~~vi~~~~~----------~~vLl~~r~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~   86 (148)
T 2azw_A           17 TRYAAYIIVSKPEN----------NTMVLVQAPNGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFY   86 (148)
T ss_dssp             ECCEEEEECEEGGG----------TEEEEEECTTSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEE
T ss_pred             eeeEEEEEEECCCC----------CeEEEEEcCCCCEeCCCcccCCCCCHHHHHHHHHHHHhCCeeEeeeEEEEEEEEEc
Confidence            34567777777521          4678888878999999999999999999999999999999987 443333211111


Q ss_pred             e-cCC--cEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         129 Y-SQS--KKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       129 ~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      . ...  .+...++|.+.........           ..|..++.|+|++++.+++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~e~~~~~W~~~~el~~~~  131 (148)
T 2azw_A           87 SNHRQTAYYNPGYFYVANTWRQLSEP-----------LERTNTLHWVAPEEAVRLL  131 (148)
T ss_dssp             ETTTTEEEEEEEEEEEEEEEEECSSC-----------C-CCSEEEEECHHHHHHHB
T ss_pred             CCCCCcceEEEEEEEEEEcCcCCcCC-----------CCceeeEEEeeHHHHHhhh
Confidence            1 111  2445677777665332211           1366799999999999875

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6

Probab=99.75  E-value=1.6e-17  Score=135.17  Aligned_cols=114  Identities=19%  Similarity=0.221  Sum_probs=78.7

Q ss_pred             CccceEEEEEEecCCceEEEEeccCcEEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeece
Q psy7748          49 SGYHASHCMIFAYNDDKIFATYTARANVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSD  123 (232)
Q Consensus        49 ~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~  123 (232)
                      ....+++++|+..++        .+++||+.+|.    +|.|++|||++++|||+++||+||++||||+.+. ...+...
T Consensus        11 ~p~v~v~~vi~~~~~--------~~~~vLLv~r~~~~~~g~w~lPGG~ve~gEs~~~Aa~REl~EEtGl~~~~~~~l~~~   82 (226)
T 2fb1_A           11 TFYLGIDCIIFGFNE--------GEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGAF   82 (226)
T ss_dssp             CEEEEEEEEEEEEET--------TEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEEE
T ss_pred             CCeEEEEEEEEEEeC--------CCCEEEEEECcCCCCCCCEECCeeccCCCCCHHHHHHHHHHHHHCCCCCceEEEEEe
Confidence            345667777774221        23567888884    4899999999999999999999999999999987 4443332


Q ss_pred             eeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         124 LVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      .. .......+.+.++|.+.+..+......          .|..++.|+|+++++++.
T Consensus        83 ~~-~~r~~~~~~v~~~y~a~~~~~~~~~~~----------~e~~~~~W~~~~el~~l~  129 (226)
T 2fb1_A           83 GA-IDRDPGERVVSIAYYALININEYDREL----------VQKHNAYWVNINELPALI  129 (226)
T ss_dssp             CC-TTSSSSSCEEEEEEEEECCTTSSCHHH----------HHHTTEEEEETTSCCCBS
T ss_pred             CC-CCcCCCceEEEEEEEEEecCcccccCC----------ccccceEEEEHHHhhhcc
Confidence            21 111223356666777776544322111          478899999999999865

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A

Probab=99.75  E-value=1.6e-17  Score=126.61  Aligned_cols=92  Identities=17%  Similarity=0.190  Sum_probs=66.0

Q ss_pred             EEEEEEe---eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCccc
Q psy7748          75 NVLMQMR---FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVL  150 (232)
Q Consensus        75 ~vLl~~R---~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (232)
                      ++|+++|   .+|.|.||||++++|||+.+||+||++||||+.+. ..++.... +.. ........++|.+........
T Consensus        17 ~vLl~~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~-~~~-~~~~~~~~~~f~~~~~~~~~~   94 (153)
T 3shd_A           17 KFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQ-WIA-PDKTPFLRFLFAIELEQICPT   94 (153)
T ss_dssp             EEEEEEEEETTEEEEECSEEECCTTCCHHHHHHHHHHHHHCCCCCCCEEEEEEE-ECC-TTSCCEEEEEEEEECSSCCCC
T ss_pred             EEEEEEecCCCCCCEECCeEEeCCCCCHHHHHHHHHHHHHCcccccCcEEEEEE-Eec-CCCceEEEEEEEEEccccCcC
Confidence            5677776   34689999999999999999999999999999988 44443321 111 123456667888876644211


Q ss_pred             ccccccccccCCCccceeeEeeeCccc
Q psy7748         151 EIEKGALTSHDYGVEVLGTVRVPLYTM  177 (232)
Q Consensus       151 ~~~~~~~~~~~~~~E~~~~~wvpl~el  177 (232)
                      ..         .+.|..++.|+|++++
T Consensus        95 ~~---------~~~E~~~~~W~~~~el  112 (153)
T 3shd_A           95 QP---------HDSDIDCCRWVSAEEI  112 (153)
T ss_dssp             CC---------CSTTCCEEEEECHHHH
T ss_pred             CC---------CcccceeeEEecHHHh
Confidence            11         1257889999999999

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}

Probab=99.75  E-value=7.8e-18  Score=128.50  Aligned_cols=109  Identities=16%  Similarity=0.099  Sum_probs=74.6

Q ss_pred             cceEEEEEEecCCceEEEEeccCcEEEEEEeeCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeece-eeeee
Q psy7748          51 YHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSD-LVCIH  128 (232)
Q Consensus        51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~-~~~~~  128 (232)
                      +.++++++++.            +++|+++| +|.|.||||++++||++.+||+||++||||+.+. ..+.... +.+..
T Consensus        19 ~~~~~~ii~~~------------~~vLl~~r-~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~   85 (154)
T 2pqv_A           19 GVRATALIVQN------------HKLLVTKD-KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAFVVENRFEV   85 (154)
T ss_dssp             EEEEEECCEET------------TEEEEEEE-TTEEECEEEECBTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEE
T ss_pred             eEEEEEEEEEC------------CEEEEEec-CCeEECcccCcCCCCCHHHHHHHHHHHHhCCeeeeceEEEEEeeeecC
Confidence            45566666552            36788888 9999999999999999999999999999999987 4433222 11211


Q ss_pred             ecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         129 YSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      .....+...++|.+..........        ..+.|..++.|+|++++.++
T Consensus        86 ~~~~~~~~~~~f~~~~~~~~~~~~--------~~~~e~~~~~W~~~~el~~~  129 (154)
T 2pqv_A           86 DGVSYHNIEFHYLVDLLEDAPLTM--------QEDEKRQPCEWIDLDKLQNI  129 (154)
T ss_dssp             TTEEEEEEEEEEEEEESSCCCSEE--------EETTEEEEEEEEEGGGGGGS
T ss_pred             CCCcceEEEEEEEEEecCCCCccc--------CCCCceeeEEEeEHHHHhhc
Confidence            111124456678877654432110        11247889999999999986

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0

Probab=99.75  E-value=2.7e-17  Score=123.61  Aligned_cols=92  Identities=24%  Similarity=0.174  Sum_probs=67.8

Q ss_pred             EEEEEEe-------eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeec
Q psy7748          75 NVLMQMR-------FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEK  146 (232)
Q Consensus        75 ~vLl~~R-------~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (232)
                      .+|+++|       ++|.|+||||++++||++.+||.||++||||+.+. ...+....   ......+...++|.+....
T Consensus        18 ~vLL~~r~~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EE~Gl~~~~~~~~~~~~---~~~~~~~~~~~~f~~~~~~   94 (140)
T 3gwy_A           18 KYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEKLLTVH---HTYPDFEITMHAFLCHPVG   94 (140)
T ss_dssp             EEEEEEC---------CCEECSEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEEE---CCCSSCCEEEEEEEEEECC
T ss_pred             EEEEEEecCCCCCCCCCeEECCCccCCCCCCHHHHHHHHHHHhhCcEEEeceEEEEEE---EEeCCceEEEEEEEEEecC
Confidence            5677777       34789999999999999999999999999999987 44333221   2222346677888887765


Q ss_pred             CcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         147 TDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      +.+..            .|..++.|++++++.++.
T Consensus        95 ~~~~~------------~E~~~~~W~~~~el~~~~  117 (140)
T 3gwy_A           95 QRYVL------------KEHIAAQWLSTREMAILD  117 (140)
T ss_dssp             SCCCC------------CSSCEEEEECHHHHTTSC
T ss_pred             Ccccc------------cccceeEeccHHHHhhCC
Confidence            43221            377899999999999873

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A

Probab=99.75  E-value=7.7e-17  Score=124.75  Aligned_cols=117  Identities=21%  Similarity=0.176  Sum_probs=78.5

Q ss_pred             CccceEEEEEEecCCceEEEEeccCcEEEEEEee-CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeecee--
Q psy7748          49 SGYHASHCMIFAYNDDKIFATYTARANVLMQMRF-DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDL--  124 (232)
Q Consensus        49 ~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~--  124 (232)
                      .++.++++++++.+           +.+|+++|. +|.|.+|||++++|||+.+||.||++||||+.+. ...+....  
T Consensus         6 ~~~~~v~~~i~~~~-----------~~vLl~~r~~~~~w~~p~G~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~~~   74 (164)
T 2kdv_A            6 GYRPNVGIVICNRQ-----------GQVMWARRFGQHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILASTRNW   74 (164)
T ss_dssp             SEEEEEEEEEECTT-----------SEEEEEEETTCCCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEECSSC
T ss_pred             CCCcEEEEEEEccC-----------CEEEEEEEcCCCeEECCeeecCCCCCHHHHHHHHHHHHHCCCccceEEEEEecce
Confidence            45778888888765           346677775 5899999999999999999999999999999987 44333221  


Q ss_pred             -eeeeec---------CCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         125 -VCIHYS---------QSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       125 -~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                       .+....         .......++|.+.+....... .   .. ...+.|+.++.|++++++.+.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~---l~-~~~~~E~~~~~W~~~~e~~~~l  136 (164)
T 2kdv_A           75 LRYKLPKRLVRWDTKPVCIGQKQKWFLLQLVSGDAEI-N---MQ-TSSTPEFDGWRWVSYWYPVRQV  136 (164)
T ss_dssp             EEEECCTTTCCTTSSSCCCEEEEEEEEEEESSCGGGC-C---SC-SSSSCSEEEEEEEETTTGGGGS
T ss_pred             eEEecCcceeeeccCcccccceeEEEEEEecCCcccc-c---cC-CCCCchhceEEEecHHHhhhhh
Confidence             111111         012345677888765432110 0   00 0112488999999999987765

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2

Probab=99.74  E-value=1.6e-17  Score=129.98  Aligned_cols=110  Identities=16%  Similarity=0.143  Sum_probs=77.1

Q ss_pred             CCccceEEEEEEecCCceEEEEeccCcEEEEEEee------CCeeec-ceeecCCCCCHHHHHhHHHHHhhCCCCc-cee
Q psy7748          48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMRF------DGYIGF-PGGLVDAGESPLEALNRELNEEINLNPK-YKV  119 (232)
Q Consensus        48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~------~g~w~l-PgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~  119 (232)
                      .-.+.++++++++.++           .+|+++|.      +|.|+| |||++++||++.+||+||++||||+.+. ...
T Consensus        34 ~~~~~~~~v~i~~~~~-----------~vLl~~R~~~~~~~~g~w~l~pGG~ve~gE~~~~aa~REl~EEtGl~~~~~~~  102 (180)
T 2fkb_A           34 CLRHRATYIVVHDGMG-----------KILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAE  102 (180)
T ss_dssp             TCCEEEEEEEEECSSS-----------CEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEE
T ss_pred             CceeeEEEEEEECCCC-----------EEEEEECCCCCccCCCcEEeecCCCCCCCCCHHHHHHHHHHHHHCCCccceEE
Confidence            3345567777776553           46777773      578999 9999999999999999999999999876 443


Q ss_pred             eeceeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccccC
Q psy7748         120 KDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFR  182 (232)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~  182 (232)
                      +....   ......+...++|.+... +.....          +.|..++.|+|++++.+++.
T Consensus       103 l~~~~---~~~~~~~~~~~~f~~~~~-~~~~~~----------~~E~~~~~W~~~~el~~~~~  151 (180)
T 2fkb_A          103 HGQFY---FEDKNCRVWGALFSCVSH-GPFALQ----------EDEVSEVCWLTPEEITARCD  151 (180)
T ss_dssp             EEEEE---EEETTEEEEEEEEEEECC-CCCCCC----------TTTEEEEEEECHHHHHTTGG
T ss_pred             EEEEE---ecCCCceEEEEEEEEecC-CCcCCC----------hhHhheEEEecHHHHHHHHH
Confidence            33222   122234566677777632 222111          25889999999999998753

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*

Probab=99.74  E-value=6e-18  Score=129.66  Aligned_cols=110  Identities=14%  Similarity=0.081  Sum_probs=75.4

Q ss_pred             ccceEEEEEEecCCceEEEEeccCcEEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc---ceeeec
Q psy7748          50 GYHASHCMIFAYNDDKIFATYTARANVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK---YKVKDS  122 (232)
Q Consensus        50 ~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~---~~~~~~  122 (232)
                      .+.++++++++.+           +.+|+++|.    +|.|+||||++++||++.+||+||++||||+.+.   ...+..
T Consensus        17 ~~~~v~~vi~~~~-----------~~vLl~~r~~~~~~g~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~   85 (160)
T 1rya_A           17 PLVSLDFIVENSR-----------GEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGV   85 (160)
T ss_dssp             CEEEEEEEEECTT-----------SCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEE
T ss_pred             cEEEEEEEEEcCC-----------CEEEEEeccCCCCCCEEECCccccCCCCCHHHHHHHHHHHHHCCCCCcccceEEEE
Confidence            3457777777654           346677773    4899999999999999999999999999999963   333222


Q ss_pred             e-eeeeee----cCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         123 D-LVCIHY----SQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       123 ~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      . +.+...    ....+...++|.+....+.+...          ..|..++.|++++++.++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~----------~~e~~~~~W~~~~el~~~  138 (160)
T 1rya_A           86 WQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLP----------DEQHDDYRWLTSDALLAS  138 (160)
T ss_dssp             EEEEESSBTTBSSSCEEEEEEEEEEECCGGGCCCC----------SSSEEEEEEECHHHHHHC
T ss_pred             EeEEEcccccCCCcCcEEEEEEEEEEcCccccccC----------CCccceEEEecHHHHhhc
Confidence            2 111111    01226677888887654332211          247889999999999874

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0

Probab=99.74  E-value=2.7e-17  Score=123.83  Aligned_cols=94  Identities=24%  Similarity=0.340  Sum_probs=69.0

Q ss_pred             cEEEEEEee-----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecC
Q psy7748          74 ANVLMQMRF-----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKT  147 (232)
Q Consensus        74 ~~vLl~~R~-----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (232)
                      +++|+++|.     +|.|+||||+++.||++.+||.||++||||+.+. ..+.... .........+...++|.+....+
T Consensus        20 ~~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   98 (144)
T 3r03_A           20 GRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEELGVDTRASCLAPLA-FASHSYDTFHLLMPLYACRSWRG   98 (144)
T ss_dssp             SCEEEEECCTTSSSTTCEECSEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEEE-EEEEECSSSEEEEEEEEECCCBS
T ss_pred             CEEEEEEeCCCCCCCCcEECCCcEecCCCCHHHHHHHHHHHHhCceeeccceEEEE-eeeccCCCeEEEEEEEEEEecCC
Confidence            356777773     3799999999999999999999999999999987 4322221 12222334567778888876544


Q ss_pred             cccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         148 DVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       148 ~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      .+.            ..|..++.|++++++.++
T Consensus        99 ~~~------------~~e~~~~~W~~~~el~~~  119 (144)
T 3r03_A           99 RAT------------AREGQTLAWVRAERLREY  119 (144)
T ss_dssp             CCC------------CCSSCEEEEECGGGGGGS
T ss_pred             ccC------------CCCcceEEEEeHHHhccC
Confidence            322            136778999999999986

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}

Probab=99.74  E-value=3.6e-17  Score=125.38  Aligned_cols=108  Identities=23%  Similarity=0.313  Sum_probs=75.2

Q ss_pred             CccceEEEEEEecCCceEEEEeccCcEEEEEEee-----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeec
Q psy7748          49 SGYHASHCMIFAYNDDKIFATYTARANVLMQMRF-----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDS  122 (232)
Q Consensus        49 ~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~-----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~  122 (232)
                      .....+++++++.+           +.+|+++|.     +|.|+||||++++||++.+||.||++||||+.+. ..+...
T Consensus        27 ~~~~~~~~~i~~~~-----------~~vLL~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~   95 (158)
T 3hhj_A           27 SLLIVVACALLDQD-----------NRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGVHVQADNLFPL   95 (158)
T ss_dssp             CEEEEEEEEEBCTT-----------SEEEEEECCCTTSCCCCCBCCEEECCTTCCHHHHHHHHHHHHHCCBCCGGGCEEE
T ss_pred             ceEEEEEEEEEeCC-----------CEEEEEEeCCCCCCCCEEECCceeecCCCCHHHHHHHHHHHHhCcEeecceEEEE
Confidence            33445555555544           357788774     3799999999999999999999999999999987 432222


Q ss_pred             eeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         123 DLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      .. ........+...++|.+....+.+.            ..|..++.|++++++.++
T Consensus        96 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~------------~~e~~~~~W~~~~el~~~  140 (158)
T 3hhj_A           96 TF-ASHGYETFHLLMPLYFCSHYKGVAQ------------GREGQNLKWIFINDLDKY  140 (158)
T ss_dssp             EE-EEEECSSCEEEEEEEEESCCBSCCC------------CTTSCEEEEEEGGGGGGS
T ss_pred             EE-EeeccCCcEEEEEEEEEEECCCccC------------CccccceEEEcHHHHhhC
Confidence            11 1122234467777888766543221            136778999999999986

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A

Probab=99.74  E-value=4.2e-17  Score=127.64  Aligned_cols=93  Identities=19%  Similarity=0.200  Sum_probs=67.1

Q ss_pred             EEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcc
Q psy7748          75 NVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDV  149 (232)
Q Consensus        75 ~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (232)
                      ++|+++|.    +|.|+||||++++||++++||+||++||||+.+. ...+..... ...........++|.+....+.+
T Consensus        37 ~vLL~~r~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~~-~~~~~~~~~~~~~f~~~~~~~~~  115 (176)
T 3q93_A           37 RVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQIVF-EFVGEPELMDVHVFCTDSIQGTP  115 (176)
T ss_dssp             EEEEEEECSSTTTTSEECEEEECCTTSCHHHHHHHHHHHHHSCEESCCEEEEEEEE-EETTCSCEEEEEEEEESCEESCC
T ss_pred             EEEEEEEcCCCCCCeEECceecCCCCCCHHHHHHHHHHHHHCCcceeeEEEEEEEE-EcCCCCcEEEEEEEEEECCCCCc
Confidence            56666663    4899999999999999999999999999999987 544433322 22222346667788876544432


Q ss_pred             cccccccccccCCCccceeeEeeeCcccccc
Q psy7748         150 LEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       150 ~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      ..            .|..++.|+++++++++
T Consensus       116 ~~------------~e~~~~~W~~~~el~~~  134 (176)
T 3q93_A          116 VE------------SDEMRPCWFQLDQIPFK  134 (176)
T ss_dssp             CC------------CSSEEEEEEETTCCCGG
T ss_pred             CC------------CcceeeEEeeHHHcccc
Confidence            21            35667899999999976

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A

Probab=99.73  E-value=3e-17  Score=126.72  Aligned_cols=95  Identities=19%  Similarity=0.114  Sum_probs=63.2

Q ss_pred             EEEEEEee------CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceee-----eeeecCC---cEEEEEE
Q psy7748          75 NVLMQMRF------DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLV-----CIHYSQS---KKIILHF  139 (232)
Q Consensus        75 ~vLl~~R~------~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~-----~~~~~~~---~~~~~~~  139 (232)
                      .+|+++|.      +|.|+||||++++||++++||+||++||||+.+. ..+....+.     ..+....   ...+.++
T Consensus        40 ~vLL~~r~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (165)
T 3oga_A           40 CYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITPWTFRDDIRIKTYADGRQEEIYMIYLI  119 (165)
T ss_dssp             EEEEEEECC------CCEECCCEECCTTCCHHHHHHHHHHHHHCSSCCEEEEEEEEEEEEEEEEEC--CCEEEEEEEEEE
T ss_pred             EEEEEEecCCCCCCCCeEECCccccCCCCCHHHHHHHHHHHHhCCCccccceeeeeeecceeeEecCCCCceeEEEEEEE
Confidence            56777663      3789999999999999999999999999999987 443322211     1111111   1233445


Q ss_pred             EEEEeecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         140 YALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      |.+....+.+..           +.|..++.|++++++.++
T Consensus       120 ~~~~~~~~~~~~-----------~~E~~~~~W~~~~el~~~  149 (165)
T 3oga_A          120 FDCVSANRDICI-----------NDEFQDYAWVKPEELALY  149 (165)
T ss_dssp             EEEEESCCCCCC-----------CTTEEEEEEECGGGGGGS
T ss_pred             EEeeccCCCccC-----------CchheeeEEccHHHHhhC
Confidence            555544333221           147889999999999986

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}

Probab=99.73  E-value=4.9e-17  Score=129.45  Aligned_cols=114  Identities=17%  Similarity=0.183  Sum_probs=69.1

Q ss_pred             CccceEEEEEEecCCceEEEEeccCcEEEEEEe-eCCeeecceeecCCCCCHHHHHhHHHHHhhCCC-Cc-ce--eeece
Q psy7748          49 SGYHASHCMIFAYNDDKIFATYTARANVLMQMR-FDGYIGFPGGLVDAGESPLEALNRELNEEINLN-PK-YK--VKDSD  123 (232)
Q Consensus        49 ~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R-~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~-~~-~~--~~~~~  123 (232)
                      ..+.+|++++++.++.          +||+++| ..|.|.||||++|+|||+.+||+||++||||+. +. ..  .....
T Consensus        43 ~~h~~~~~vv~~~~~~----------~vLL~~r~~~g~w~lPgG~ve~gEs~~eaa~REl~EEtGl~~~~~~~~~~~~~~  112 (197)
T 3fcm_A           43 IAHLTSSAFAVNKERN----------KFLMIHHNIYNSWAWTGGHSDNEKDQLKVAIKELKEETGVKNPTPLLDKAFALD  112 (197)
T ss_dssp             SEEEEEEEEEECTTSC----------EEEEEEETTTTEEECEEEECTTCCBHHHHHHHHHHHHHCCSSCEESCSSCSEEE
T ss_pred             CccEEEEEEEEECCCC----------EEEEEEecCCCCEECCccccCCCCCHHHHHHHHHHHHHCCCcccccCCCceEEE
Confidence            3456778888876642          4555555 568999999999999999999999999999998 43 11  11111


Q ss_pred             ee-eeeec------CCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         124 LV-CIHYS------QSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       124 ~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      +. .....      .....+.++|.+....+....        . ...|..++.|+|++++.+++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~E~~~~~W~~~~el~~~~  168 (197)
T 3fcm_A          113 VLTVNGHIKRGKYVSSHLHLNLTYLIECSEDETLM--------L-KEDENSGVMWIPFNEISKYC  168 (197)
T ss_dssp             EEEECCEEETTEEECCEEEEEEEEEEECCTTSCCC--------C-CC----CEEEEEGGGHHHHC
T ss_pred             EeeecCccccCcccCCceeEEEEEEEEeCCCcccC--------C-CcccccceEEccHHHHHhhc
Confidence            11 11100      111122244555544332111        0 12588899999999999886

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}

Probab=99.73  E-value=4.9e-17  Score=126.22  Aligned_cols=112  Identities=20%  Similarity=0.177  Sum_probs=72.5

Q ss_pred             CccceEEEEEEecCCceEEEEeccCcEEEEEEee--CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceee
Q psy7748          49 SGYHASHCMIFAYNDDKIFATYTARANVLMQMRF--DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLV  125 (232)
Q Consensus        49 ~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~  125 (232)
                      ..+..+++++++.            +++|+.+|.  +|.|+||||++++||++++||+||++||||+.+. ..++...  
T Consensus        21 ~~~~~v~~ii~~~------------~~vLL~~r~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~--   86 (171)
T 3id9_A           21 IMQVRVTGILIED------------EKVLLVKQKVANRDWSLPGGRVENGETLEEAMIREMREETGLEVKIKKLLYVC--   86 (171)
T ss_dssp             -CEEEEEEEEEET------------TEEEEEECSSTTCCEECCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEEE--
T ss_pred             ceEEEEEEEEEEC------------CEEEEEEEECCCCeEECCCccCCCCCCHHHHHHHHHHHHHCCccccceEEEEE--
Confidence            3455666666653            356777775  6899999999999999999999999999999987 4333222  


Q ss_pred             eeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         126 CIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                       ...........++|.+....+......    ...+ ..|..++.|+|++++.++
T Consensus        87 -~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~E~~~~~w~~~~el~~~  135 (171)
T 3id9_A           87 -DKPDASPSLLHITFLLERIEGEITLPS----NEFD-HNPIHDVQMVPINELSYY  135 (171)
T ss_dssp             -EETTSSSCEEEEEEEEEEC------------------CCCCCEEEEETGGGGGG
T ss_pred             -cccCCCCcEEEEEEEEEEcCCcccCCc----cCCC-cCeeeeEEEEeHHHHhhC
Confidence             122223345566677766544433211    0111 247889999999999986

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}

Probab=99.73  E-value=1.4e-17  Score=131.42  Aligned_cols=98  Identities=22%  Similarity=0.150  Sum_probs=65.9

Q ss_pred             cEEEEEEe-----------eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEE
Q psy7748          74 ANVLMQMR-----------FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYA  141 (232)
Q Consensus        74 ~~vLl~~R-----------~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  141 (232)
                      ++||+++|           ++|.|.||||++++|||+++||+||++||||+.+. ...+.... ........+...++|.
T Consensus        46 ~~vLL~~r~~~~~~g~~~~~~g~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~~~~-~~~~~~~~~~~~~~~~  124 (187)
T 3i9x_A           46 LHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDIPLIPFGVFD-KPGRDPRGWIISRAFY  124 (187)
T ss_dssp             EEEEEEECCSBCTTSSBCTTTTCEECSEEECCTTSCHHHHHHHHHHHHHCCCSCCCEEEEEEC-CTTSSTTSSEEEEEEE
T ss_pred             CEEEEEEEccccccccCCCCCCEEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEc-CCccCCCCCEEEEEEE
Confidence            46788887           34799999999999999999999999999999987 54443322 2121222234445555


Q ss_pred             EEeecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         142 LQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      +.+.........        .+.|..++.|+|++++.++
T Consensus       125 ~~~~~~~~~~~~--------~~~E~~~~~W~~~~el~~~  155 (187)
T 3i9x_A          125 AIVPPEALEKRA--------AGDDAAEIGLFPMTEALEL  155 (187)
T ss_dssp             EECCHHHHHHHH--------HSTTTTTEEEEEHHHHTTS
T ss_pred             EEEcCcccCCcC--------CCCceeEEEEEeHHHcccC
Confidence            544322111000        0247788999999999975

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A

Probab=99.73  E-value=4e-17  Score=123.41  Aligned_cols=110  Identities=17%  Similarity=0.138  Sum_probs=76.1

Q ss_pred             cceEEEEEEecCCceEEEEeccCcEEEEEEee--CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-c--eeeeceee
Q psy7748          51 YHASHCMIFAYNDDKIFATYTARANVLMQMRF--DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-Y--KVKDSDLV  125 (232)
Q Consensus        51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~--~~~~~~~~  125 (232)
                      +.++++++++.++          +.+|+.+|.  +|.|.||||++++||++.+||+||++||||+.+. .  .++.....
T Consensus         9 ~~~v~~~i~~~~~----------~~vLl~~r~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~   78 (150)
T 2o1c_A            9 PVSILVVIYAQDT----------KRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRT   78 (150)
T ss_dssp             SEEEEEEEEETTT----------CEEEEEECSSSTTCEESEEEECCTTCCHHHHHHHHHHHHHCCCHHHHTCCEEEEEEE
T ss_pred             ceEEEEEEEeCCC----------CEEEEEEecCCCCceECCccccCCCCCHHHHHHHHHHHHhCCCccccceeEEeeece
Confidence            3577778887542          245677774  5899999999999999999999999999999986 3  22222111


Q ss_pred             ee----------eecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         126 CI----------HYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       126 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      ..          ......+...++|.+....+....           ..|..++.|+|++++.++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-----------~~E~~~~~W~~~~el~~~~  133 (150)
T 2o1c_A           79 VEFEIFSHLRHRYAPGVTRNTESWFCLALPHERQIV-----------FTEHLAYKWLDAPAAAALT  133 (150)
T ss_dssp             EEEECCGGGGGGBCTTCCEEEEEEEEEEESSCCCCC-----------CSSSSCEEEEEHHHHHHHC
T ss_pred             eeeeeecccccccCCCCcceEEEEEEEEcCCCCCcC-----------hhHhhccEeecHHHHHhhh
Confidence            10          111123567788888765432211           1478899999999999864

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*

Probab=99.72  E-value=2.9e-17  Score=126.22  Aligned_cols=122  Identities=15%  Similarity=0.032  Sum_probs=77.2

Q ss_pred             CCccceEEEEEEecCCceEEEEeccCcEEEEEEee--CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ce-eeec-
Q psy7748          48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMRF--DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YK-VKDS-  122 (232)
Q Consensus        48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~-~~~~-  122 (232)
                      ..++.++++++++.++           ++|+++|.  +|.|++|||++++|||+++||+||++||||+.+. +. .... 
T Consensus        11 ~~~~~~v~~~i~~~~~-----------~vLl~~r~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~   79 (165)
T 1f3y_A           11 EGYRRNVGICLMNNDK-----------KIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYW   79 (165)
T ss_dssp             SSCCCEEEEEEECTTS-----------CEEEEEETTEEEEEECCEEECCTTCCHHHHHHHHHHHHHCCCSEEEEEECSSC
T ss_pred             cceeeeEEEEEECCCC-----------cEEEEecCCCCCcEECCeeccCCCCCHHHHHHHHHHHhhCCChhhhhcccccc
Confidence            3467888888887653           45667773  5899999999999999999999999999999975 32 1111 


Q ss_pred             -eeeeeee---------c-CCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccccCC
Q psy7748         123 -DLVCIHY---------S-QSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRG  183 (232)
Q Consensus       123 -~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~  183 (232)
                       .+.+...         . .......++|.+.+......... .. . ..+..|..++.|+|++++.+++..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~-~~-~-~~~~~E~~~~~W~~~~el~~~~~~  148 (165)
T 1f3y_A           80 LTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINL-LG-D-GSEKPEFGEWSWVTPEQLIDLTVE  148 (165)
T ss_dssp             CBCCCCHHHHHHHGGGSCSSCCSCBEEEEEEEECSCGGGCCC-CC-C-SSSCCSEEEEEEECHHHHHHHBCG
T ss_pred             eeeecCccccccccccccccccCceEEEEEEEecCCcccccc-cC-C-CCCCChhheeEEecHHHHHHHhhh
Confidence             1111100         0 00112445667666433211100 00 0 012358899999999999997643

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}

Probab=99.72  E-value=2.4e-17  Score=131.53  Aligned_cols=116  Identities=15%  Similarity=0.074  Sum_probs=73.1

Q ss_pred             cCCccceEEEEEEecCCceEEEEeccCcEEEEEEe-e--CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeec
Q psy7748          47 YKSGYHASHCMIFAYNDDKIFATYTARANVLMQMR-F--DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDS  122 (232)
Q Consensus        47 ~~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R-~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~  122 (232)
                      ....+.++++++++.+++          .||+.+| .  +|.|+||||++++||++++||+||++||||+.+. ..+...
T Consensus        22 ~~~~~v~v~~~v~~~~~~----------~vLL~~r~~~~~g~w~lPGG~ve~gEs~~~aA~REl~EEtGl~~~~~~l~~~   91 (199)
T 3h95_A           22 SMSHQVGVAGAVFDESTR----------KILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRSVLSI   91 (199)
T ss_dssp             ----CCEEEEEEEETTTT----------EEEEEEESSSSTTSBBCCEEECCTTCCHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_pred             cCcccceEEEEEEeCCCC----------EEEEEEEcCCCCCCEECCccccCCCCCHHHHHHHHHHHHhCCccccceEEEE
Confidence            356677787888876533          4555555 3  5899999999999999999999999999999987 444432


Q ss_pred             eeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         123 DLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      ....... .......++|.+.+........       . .+.|..++.|+|++++.++.
T Consensus        92 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~-~~~E~~~~~W~~~~el~~~~  141 (199)
T 3h95_A           92 RQQHTNP-GAFGKSDMYIICRLKPYSFTIN-------F-CQEECLRCEWMDLNDLAKTE  141 (199)
T ss_dssp             EECC----------CEEEEEEEEESCCCCC-------C-CTTTEEEEEEEEHHHHHHCS
T ss_pred             EeeecCC-CCceeEEEEEEEEEcCCCcccC-------C-CccceeeeEEEeHHHHhhhh
Confidence            2111111 1123344556665543321111       1 12589999999999999875

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*

Probab=99.72  E-value=3.6e-17  Score=129.40  Aligned_cols=110  Identities=15%  Similarity=0.064  Sum_probs=76.6

Q ss_pred             ccceEEEEEEecCCceEEEEeccCcEEEEEEee------CCeeec-ceeecCCCCCHHHHHhHHHHHhhCCCCc-c-eee
Q psy7748          50 GYHASHCMIFAYNDDKIFATYTARANVLMQMRF------DGYIGF-PGGLVDAGESPLEALNRELNEEINLNPK-Y-KVK  120 (232)
Q Consensus        50 ~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~------~g~w~l-PgG~ve~gEs~~~aa~REl~EEtGl~~~-~-~~~  120 (232)
                      .+.++++++++.+           +++|+++|.      +|.|++ |||++++|||+++||+||++||||+.+. . ...
T Consensus        31 ~~~~v~~~i~~~~-----------g~vLl~~R~~~~~~~~g~w~~~PgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~   99 (190)
T 1hzt_A           31 LHLAFSSWLFNAK-----------GQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIY   99 (190)
T ss_dssp             CEECEEEEEECTT-----------CCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEE
T ss_pred             eEEEEEEEEEcCC-----------CEEEEEEeCCCCCCCCCcccCcccccCCCCCCHHHHHHHHHHHHHCCCchhhheee
Confidence            3457777777655           346777772      589999 9999999999999999999999999988 5 444


Q ss_pred             eceeeeeeec-C-CcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         121 DSDLVCIHYS-Q-SKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       121 ~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      .......... + ..+...++|.+... +.+...          +.|..++.|+|++++.+++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~f~~~~~-~~~~~~----------~~E~~~~~W~~~~el~~~~  151 (190)
T 1hzt_A          100 PDFRYRATDPSGIVENEVCPVFAARTT-SALQIN----------DDEVMDYQWCDLADVLHGI  151 (190)
T ss_dssp             TTCEEEEECTTSCEEEEECCEEEEEBC-SCCCCC----------TTTEEEEEEECHHHHHHHH
T ss_pred             eeEEEEeeCCCCCcceEEEEEEEEecC-CCCcCC----------ccceeeEEEecHHHHHHHH
Confidence            3332211111 1 12456677777654 222111          2488999999999999875

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*

Probab=99.72  E-value=2.1e-17  Score=135.70  Aligned_cols=133  Identities=19%  Similarity=0.171  Sum_probs=86.0

Q ss_pred             cceEEEEEEecCCceEEEEeccCcEEEEEEee----CCeeecceeecCC--CCCHHHHHhHHHHHhhCCCCc-ceeeece
Q psy7748          51 YHASHCMIFAYNDDKIFATYTARANVLMQMRF----DGYIGFPGGLVDA--GESPLEALNRELNEEINLNPK-YKVKDSD  123 (232)
Q Consensus        51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~----~g~w~lPgG~ve~--gEs~~~aa~REl~EEtGl~~~-~~~~~~~  123 (232)
                      ..++.++|+..+        +..++||+.+|.    +|.|+||||++++  |||+++||+||++||||+.+. ...+..+
T Consensus        22 ~v~v~~vi~~~~--------~~~~~vLLv~R~~~~~~g~W~lPGG~ve~~~gEs~~~AA~REl~EEtGl~~~~~~~l~~~   93 (240)
T 3gz5_A           22 LLTVDAVLFTYH--------DQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAVVPPYIEQLCTV   93 (240)
T ss_dssp             EEEEEEEEEEEE--------TTEEEEEEEECCSSSSTTCEECSEEECCTTTCSBHHHHHHHHHHHHHSSCCSEEEEEEEE
T ss_pred             ccEEEEEEEEEe--------CCCcEEEEEECcCCCCCCCEECCccccCCCCCcCHHHHHHHHHHHHHCCCCCceeeEEEe
Confidence            345666665322        223577888873    4899999999999  999999999999999999987 4443322


Q ss_pred             eeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccc-cCCchHHHHHHHHHHHHHHHHH
Q psy7748         124 LVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG-FRGLPCFLTHSFIGNAKHQLLA  202 (232)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~-i~~~~~~l~~~~i~~~~~~l~~  202 (232)
                      .. .......+.+.++|.+.+.........          .|..++.|+|++++++. +...    ...++..+..++..
T Consensus        94 ~~-~~r~~~~~~~~~~y~a~~~~~~~~~~~----------~e~~~~~W~~~~el~~~~l~~d----h~~il~~a~~rlr~  158 (240)
T 3gz5_A           94 GN-NSRDARGWSVTVCYTALMSYQACQIQI----------ASVSDVKWWPLADVLQMPLAFD----HLQLIEQARERLTQ  158 (240)
T ss_dssp             EE-SSSSTTSCEEEEEEEEECCHHHHHHHH----------TTCTTEEEEEHHHHTTSCCSTT----HHHHHHHHHHHHHH
T ss_pred             CC-CccCCCceEEEEEEEEEecccccCCCC----------CcccceEEecHHHcccCCcchh----HHHHHHHHHHHHHH
Confidence            22 222233456677777776544332211          46779999999999853 3222    34455555555555


Q ss_pred             HHHh
Q psy7748         203 ALLK  206 (232)
Q Consensus       203 ~l~~  206 (232)
                      .+..
T Consensus       159 kl~y  162 (240)
T 3gz5_A          159 KALY  162 (240)
T ss_dssp             HHHH
T ss_pred             hccc
Confidence            4443

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}

Probab=99.72  E-value=7.2e-17  Score=127.67  Aligned_cols=94  Identities=22%  Similarity=0.247  Sum_probs=66.3

Q ss_pred             EEEEEEe-eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCC---cEEEEEEEEEEeecCcc
Q psy7748          75 NVLMQMR-FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQS---KKIILHFYALQVEKTDV  149 (232)
Q Consensus        75 ~vLl~~R-~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  149 (232)
                      +||+.+| .+|.|.+|||++++||++++||+||++||||+.+. ..+........ ....   .+...++|.+....+.+
T Consensus        16 ~vLL~~r~~~g~W~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~f~a~~~~~~~   94 (188)
T 3fk9_A           16 QVLLLQKPRRGWWVAPGGKMEAGESILETVKREYWEETGITVKNPELKGIFSMVI-FDEGKIVSEWMLFTFKATEHEGEM   94 (188)
T ss_dssp             EEEEEECTTTCCEECCEEECCTTCCHHHHHHHHHHHHHSCEESSCEEEEEEEEEE-EETTEEEEEEEEEEEEESCEESCC
T ss_pred             EEEEEEeCCCCeEECCeecccCCCCHHHHHHHHHHHHHCCCCCCceEEEEEEEEe-cCCCcceEEEEEEEEEEECCCCCC
Confidence            5666666 56899999999999999999999999999999987 44433332222 2222   12366777776554443


Q ss_pred             cccccccccccCCCccceeeEeeeCcccccc
Q psy7748         150 LEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       150 ~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      ...           .|..++.|+++++++++
T Consensus        95 ~~~-----------~e~~~~~W~~~~el~~~  114 (188)
T 3fk9_A           95 LKQ-----------SPEGKLEWKKKDEVLEL  114 (188)
T ss_dssp             CSE-----------ETTEEEEEEEGGGGGGS
T ss_pred             cCC-----------CCCEeEEEEEHHHhhhC
Confidence            222           24468999999999876

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}

Probab=99.71  E-value=5.8e-17  Score=124.85  Aligned_cols=108  Identities=17%  Similarity=0.126  Sum_probs=75.0

Q ss_pred             cceEEEEEEecCCceEEEEeccCcEEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceee
Q psy7748          51 YHASHCMIFAYNDDKIFATYTARANVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLV  125 (232)
Q Consensus        51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~  125 (232)
                      +.++++++++.+.          ++||+++|.    .|.|+||||++++||++.+||+||++||||+.+. ..++.....
T Consensus        10 ~~~v~~vi~~~~~----------~~vLL~~r~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~   79 (161)
T 3exq_A           10 ELVTMVMVTDPET----------QRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGLRLSGVTFCGTCEW   79 (161)
T ss_dssp             EEEEEEEEBCTTT----------CCEEEECCCCCTTTCSBBCCCCBCCTTSCHHHHHHHHHHHHHCCEESCCEEEEEEEE
T ss_pred             eEEEEEEEEeCCC----------CEEEEEEccCCCCCCCEEccceecCCCCCHHHHHHHHHHHhhCcEecCCcEEEEEec
Confidence            4455556555441          246677673    3678899999999999999999999999999987 544433322


Q ss_pred             eeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         126 CIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      . ..........++|.+....+.+..            .|..++.|+|++++.++.
T Consensus        80 ~-~~~~~~~~~~~~~~~~~~~~~~~~------------~e~~~~~W~~~~el~~~~  122 (161)
T 3exq_A           80 F-DDDRQHRKLGLLYRASNFTGTLKA------------SAEGQLSWLPITALTREN  122 (161)
T ss_dssp             E-CSSCSSEEEEEEEEECCEESCCCG------------GGTTTEEEECGGGCCTTT
T ss_pred             c-cCCCCeEEEEEEEEEeccCCccCC------------CccceEEEeeHHHhhhCc
Confidence            2 112344677778888765544321            356689999999999863

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*

Probab=99.71  E-value=1.4e-16  Score=120.92  Aligned_cols=92  Identities=28%  Similarity=0.428  Sum_probs=67.7

Q ss_pred             cEEEEEEee-----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecC
Q psy7748          74 ANVLMQMRF-----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKT  147 (232)
Q Consensus        74 ~~vLl~~R~-----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (232)
                      +.+|+++|.     +|.|+||||++++||++.+||.||++||||+.+. ..++..   ..+.....+...++|.+....+
T Consensus        33 ~~vLl~~r~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  109 (153)
T 3ees_A           33 GKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGIEAEVGELKLA---CTHSYGDVGILILFYEILYWKG  109 (153)
T ss_dssp             TEEEEEECCTTSTTTTCEECSEEECCTTCCHHHHHHHHHHHHHSCEEECCCEEEE---EEEEETTEEEEEEEEEECEEES
T ss_pred             CEEEEEEeCCCCCCCCeEECCceeeCCCCCHHHHHHHHHHHHHCCccccCceEEE---EEEecCCCeEEEEEEEEEECCC
Confidence            357777773     3899999999999999999999999999999887 443332   1122223456667788776544


Q ss_pred             cccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         148 DVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       148 ~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      .+.            ..|..++.|++++++.++
T Consensus       110 ~~~------------~~e~~~~~W~~~~el~~~  130 (153)
T 3ees_A          110 EPR------------AKHHMMLEWIHPEELKHR  130 (153)
T ss_dssp             CCC------------CSSSSEEEEECGGGGGGS
T ss_pred             CcC------------CCccceEEEecHHHhhhC
Confidence            321            146779999999999986

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}

Probab=99.71  E-value=1.2e-16  Score=123.55  Aligned_cols=85  Identities=22%  Similarity=0.157  Sum_probs=57.7

Q ss_pred             EEEEEEeeCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcccccc
Q psy7748          75 NVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIE  153 (232)
Q Consensus        75 ~vLl~~R~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (232)
                      .+|+.+|.+|.|.||||++++|||+.+||+||++||||+.+. ...+.   .+..  .  ....++|.+.+. +.+... 
T Consensus        28 ~vLL~~r~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l~---~~~~--~--~~~~~~f~~~~~-~~~~~~-   98 (163)
T 3f13_A           28 GVLVTASRGGRYNLPGGKANRGELRSQALIREIREETGLRINSMLYLF---DHIT--P--FNAHKVYLCIAQ-GQPKPQ-   98 (163)
T ss_dssp             EEEEEECC---BBCSEEECCTTCCHHHHHHHHHHHHHCCCCCEEEEEE---EEEC--S--SEEEEEEEEEC--CCCCCC-
T ss_pred             EEEEEEECCCeEECCceeCCCCCCHHHHHHHHHHHHHCcccceeEEEE---EEec--C--CeEEEEEEEEEC-CcCccC-
Confidence            467777778999999999999999999999999999999987 43332   1111  1  155566777643 332221 


Q ss_pred             cccccccCCCccceeeEeeeCcccc
Q psy7748         154 KGALTSHDYGVEVLGTVRVPLYTMG  178 (232)
Q Consensus       154 ~~~~~~~~~~~E~~~~~wvpl~el~  178 (232)
                                .|..++.|++.+...
T Consensus        99 ----------~E~~~~~W~~~~~~~  113 (163)
T 3f13_A           99 ----------NEIERIALVSSPDTD  113 (163)
T ss_dssp             ----------TTCCEEEEESSTTCS
T ss_pred             ----------CCceEEEEECccccc
Confidence                      378899999955544

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1

Probab=99.71  E-value=6e-17  Score=123.13  Aligned_cols=96  Identities=16%  Similarity=0.106  Sum_probs=67.1

Q ss_pred             EEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcc
Q psy7748          75 NVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDV  149 (232)
Q Consensus        75 ~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (232)
                      ++|+.+|.    +|.|+||||++++||++.+||+||++||||+.+. ..++.... +.......+...++|.+.......
T Consensus        20 ~vLl~~r~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~-~~~~~~~~~~~~~~f~~~~~~~~~   98 (153)
T 2b0v_A           20 KYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYH-WTCASNGTTYLRFTFSGQVVSFDP   98 (153)
T ss_dssp             EEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEEE-EEETTTTEEEEEEEEEEEEEEECT
T ss_pred             EEEEEEEcCCCCCCeEECCCcCcCCCCCHHHHHHHHHHHhhCcEeccceEEEEEE-EeCCCCCcEEEEEEEEEEeCCCCC
Confidence            56777773    3589999999999999999999999999999987 44443321 111111335566777777654322


Q ss_pred             cccccccccccCCCccceeeEeeeCcccccc
Q psy7748         150 LEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       150 ~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      ...         .+.|..++.|+|++++.++
T Consensus        99 ~~~---------~~~e~~~~~W~~~~el~~~  120 (153)
T 2b0v_A           99 DRK---------LDTGIVRAAWFSIDEIRAK  120 (153)
T ss_dssp             TSC---------CCTTEEEEEEEEHHHHHHT
T ss_pred             CCC---------CCCCeeeEEEecHHHHhhh
Confidence            110         1247889999999999985

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}

Probab=99.71  E-value=2.8e-17  Score=124.18  Aligned_cols=124  Identities=15%  Similarity=0.181  Sum_probs=74.7

Q ss_pred             ceEEEEEEecCCceEEEEeccCcEEEEEEee-CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeee
Q psy7748          52 HASHCMIFAYNDDKIFATYTARANVLMQMRF-DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHY  129 (232)
Q Consensus        52 ~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~  129 (232)
                      +++++++++.+.          +++|+++|. +|.|.||||++++|||+.+||+||++||||+.+. .......+.. ..
T Consensus         5 ~~~~~~i~~~~~----------~~vLl~~r~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~-~~   73 (146)
T 2jvb_A            5 PVRGAAIFNENL----------SKILLVQGTESDSWSFPRGKISKDENDIDCCIREVKEEIGFDLTDYIDDNQFIER-NI   73 (146)
T ss_dssp             CCEEEEEBCTTS----------SEEEEECCSSSSCCBCCEECCCSSSCHHHHHHHHHHHHTSCCCSSSSCSSCEEEE-EE
T ss_pred             EEEEEEEEeCCC----------CEEEEEEEcCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCCchHhccccccccc-cc
Confidence            455666666542          356677674 5899999999999999999999999999999987 3222222221 12


Q ss_pred             cCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccccCCc--hHHHHHHHHHHH
Q psy7748         130 SQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGL--PCFLTHSFIGNA  196 (232)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~~--~~~l~~~~i~~~  196 (232)
                      . . .. .++|.+.......      .....+ +.|..++.|+|++++.+++...  ..++...++...
T Consensus        74 ~-~-~~-~~~~~~~~~~~~~------~~~~~~-~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~~~~l  132 (146)
T 2jvb_A           74 Q-G-KN-YKIFLISGVSEVF------NFKPQV-RNEIDKIEWFDFKKISKTMYKSNIKYYLINSMMRPL  132 (146)
T ss_dssp             T-T-EE-EEEEEECCCCSSS------CCCCCC-SSSCCCEEEEEHHHHHTGGGCSSCCCHHHHHHHHHH
T ss_pred             C-C-ce-EEEEEEEeccccc------cCCcCC-cchhheeEEeEHHHHHhhhcccchhhhhHHHHHHHH
Confidence            1 1 22 2333332211110      001111 2588999999999999975332  223444444433

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1

Probab=99.70  E-value=1.9e-16  Score=120.81  Aligned_cols=110  Identities=16%  Similarity=0.136  Sum_probs=73.0

Q ss_pred             ccceEEEEEEecCCceEEEEeccCcEEEEEEeeCC---eeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceee
Q psy7748          50 GYHASHCMIFAYNDDKIFATYTARANVLMQMRFDG---YIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLV  125 (232)
Q Consensus        50 ~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~g---~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~  125 (232)
                      .+.++++++++.+...        ..+|+++|..+   .|.||||++++||++.+||+||++||||+.+. ..++.....
T Consensus         7 ~~~~~~~ii~~~~~~~--------~~vLl~~r~~~~~~gw~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~   78 (155)
T 2b06_A            7 TILTNICLIEDLETQR--------VVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKNW   78 (155)
T ss_dssp             EEEEEEEEEEETTTTE--------EEEEEEC-----CCEEECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEEE
T ss_pred             cEEEEEEEEEECCCCe--------EEEEEEECCCCCCCCEeccceecCCCCCHHHHHHHHHHHHhCccccCCcEEEEEee
Confidence            4556777777644222        13677777331   28999999999999999999999999999987 444433222


Q ss_pred             eeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         126 CIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      ..  ....+...++|.+....+.+..            .|..++.|+|++++.++.
T Consensus        79 ~~--~~~~~~~~~~~~~~~~~~~~~~------------~e~~~~~W~~~~el~~~~  120 (155)
T 2b06_A           79 PL--DTGGRYIVICYKATEFSGTLQS------------SEEGEVSWVQKDQIPNLN  120 (155)
T ss_dssp             EC--TTSCEEEEEEEEECEEEECCCC------------BTTBEEEEEEGGGGGGSC
T ss_pred             cc--CCCceEEEEEEEEEecCCCCCC------------CcceeeEEeeHHHhhhCC
Confidence            11  2234666777777654332211            367789999999999874

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A

Probab=99.70  E-value=5.9e-17  Score=128.51  Aligned_cols=112  Identities=24%  Similarity=0.280  Sum_probs=73.8

Q ss_pred             CCccceEEEEEEecCCceEEEEeccCcEEEEEEe------eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceee
Q psy7748          48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMR------FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVK  120 (232)
Q Consensus        48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R------~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~  120 (232)
                      +..++++++++++.++.         ..+|+++|      ++|.|+||||++++||++++||+||++||||+.+. ...+
T Consensus        31 ~~~~~~~~~v~i~~~~~---------~~vLL~~r~~~~~~~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~l  101 (194)
T 1nqz_A           31 PHYRRAAVLVALTREAD---------PRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLL  101 (194)
T ss_dssp             --CEEEEEEEEEESSSS---------CBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEE
T ss_pred             CCCceEEEEEEEecCCC---------eEEEEEEecCCCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCCccceEEE
Confidence            34567777777765531         14566665      35899999999999999999999999999999988 5444


Q ss_pred             eceeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccc-cc
Q psy7748         121 DSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTM-GD  179 (232)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el-~~  179 (232)
                      ........   ......++|.+.+.....       .... .+.|..++.|+|++++ .+
T Consensus       102 ~~~~~~~~---~~~~~~~~f~~~~~~~~~-------~~~~-~~~E~~~~~W~~~~el~~~  150 (194)
T 1nqz_A          102 GELDDVFT---PVGFHVTPVLGRIAPEAL-------DTLR-VTPEVAQIITPTLAELRAV  150 (194)
T ss_dssp             EECCCEEE---TTTEEEEEEEEEECGGGG-------GGCC-CCTTEEEEECCBHHHHHHS
T ss_pred             EEccCccC---CCCeEEEEEEEEecCCcc-------ccCC-CccceeEEEEEEHHHhccC
Confidence            43332222   123455667776542210       0001 1258899999999999 55

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A

Probab=99.70  E-value=3.8e-16  Score=130.06  Aligned_cols=93  Identities=17%  Similarity=0.171  Sum_probs=69.2

Q ss_pred             cEEEEEEee---CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcc
Q psy7748          74 ANVLMQMRF---DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDV  149 (232)
Q Consensus        74 ~~vLl~~R~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (232)
                      +++|+.+|.   +|.|++|||++|+|||+++||+||++||||+.+. ...+....   ..  ..+..+++|.+.+..+++
T Consensus       151 ~~vLL~rr~~~~~g~w~lPgG~vE~GEt~eeAa~REv~EEtGl~v~~~~~~~~~~---~~--~~~~~~~~f~a~~~~~~~  225 (269)
T 1vk6_A          151 DSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQP---WP--FPQSLMTAFMAEYDSGDI  225 (269)
T ss_dssp             TEEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEE---EE--TTEEEEEEEEEEEEECCC
T ss_pred             CEEEEEEecCCCCCcEECCcCcCCCCCCHHHHHHHHHHHHhCceeeeEEEEEEEe---cC--CCCEEEEEEEEEECCCCc
Confidence            467777773   4899999999999999999999999999999987 44333221   11  224567778877665443


Q ss_pred             cccccccccccCCCccceeeEeeeCccccccc
Q psy7748         150 LEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       150 ~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      ...          +.|..++.|+++++++.+.
T Consensus       226 ~~~----------~~E~~~~~W~~~~el~~l~  247 (269)
T 1vk6_A          226 VID----------PKELLEANWYRYDDLPLLP  247 (269)
T ss_dssp             CCC----------TTTEEEEEEEETTSCCSCC
T ss_pred             CCC----------CcceEEEEEEEHHHhhhcc
Confidence            322          2588999999999999863

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*

Probab=99.70  E-value=8.4e-17  Score=128.00  Aligned_cols=114  Identities=18%  Similarity=0.096  Sum_probs=73.1

Q ss_pred             cCCccceEEEEEEecCCceEEEEeccCcEEEEEEee--CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeece
Q psy7748          47 YKSGYHASHCMIFAYNDDKIFATYTARANVLMQMRF--DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSD  123 (232)
Q Consensus        47 ~~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~  123 (232)
                      ...++..++++++..+         .+++||+++|.  +|.|+||||++|+||++++||+||++||||+.+. ..++...
T Consensus        36 ~~~~~~~~~~vi~~~~---------~~~~vLLv~r~~~~g~W~lPgG~ve~gEt~~eaa~REl~EEtGl~~~~~~~l~~~  106 (194)
T 2fvv_A           36 GDGYKKRAACLCFRSE---------SEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIF  106 (194)
T ss_dssp             TTSCEEEEEEEEESST---------TCCEEEEEECSSCTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred             cCCccccEEEEEEEEC---------CCCEEEEEEEeCCCCcEECCCCcCCCCcCHHHHHHHHHHHHhCCccccceEEEEE
Confidence            3455666777776432         12467777763  6899999999999999999999999999999987 4444333


Q ss_pred             eeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccccC
Q psy7748         124 LVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFR  182 (232)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~  182 (232)
                      ..   .. ... ..++|.+.+... ....+       ....+..++.|++++++++++.
T Consensus       107 ~~---~~-~~~-~~~~f~~~~~~~-~~~~~-------~~~e~~~~~~W~~~~el~~~l~  152 (194)
T 2fvv_A          107 EN---QE-RKH-RTYVYVLIVTEV-LEDWE-------DSVNIGRKREWFKIEDAIKVLQ  152 (194)
T ss_dssp             EE---TT-TTE-EEEEEEEEEEEE-CSSCH-------HHHHHCCCEEEEEHHHHHHHHT
T ss_pred             Ec---CC-Cce-EEEEEEEEEccc-cCCCC-------CcccccceEEEEEHHHHHHHHh
Confidence            21   11 222 344555544321 10000       0001336899999999998753

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6

Probab=99.69  E-value=2.9e-16  Score=131.22  Aligned_cols=142  Identities=15%  Similarity=0.166  Sum_probs=88.9

Q ss_pred             CCccceEEEEEEecCCceEEEEeccCcEEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeec
Q psy7748          48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDS  122 (232)
Q Consensus        48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~  122 (232)
                      .....++.++++..+++      ...++||+++|.    +|.|.||||++++||++++||+||++||||+.+. ..+. .
T Consensus        36 ~~p~v~v~~vv~~~~~~------~~~~~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~~AA~REl~EEtGl~v~~~~l~-~  108 (273)
T 2fml_A           36 EKPSLTVDMVLLCYNKE------ADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIE-Q  108 (273)
T ss_dssp             CCCEEEEEEEEEEEETT------TTEEEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEE-E
T ss_pred             CCCceEEEEEEEEEcCC------CCCcEEEEEEccCCCCCCcEECCccCCCCCcCHHHHHHHHHHHHHCCCCCcCcEE-E
Confidence            34456677777663321      012467888773    4899999999999999999999999999998765 2211 1


Q ss_pred             eeeeee--ecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc-------------------
Q psy7748         123 DLVCIH--YSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF-------------------  181 (232)
Q Consensus       123 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i-------------------  181 (232)
                      .+.+..  .....+.+.++|.+.+..... .          .+.|..++.|+|++++.+++                   
T Consensus       109 l~~~~~~~r~~~~~~~~~~y~a~~~~~~~-~----------~~~E~~~~~W~~~~e~~~~~~~~~e~~~l~~~~~~~~~~  177 (273)
T 2fml_A          109 LHSFSRPDRDPRGWVVTVSYLAFIGEEPL-I----------AGDDAKEVHWFNLERHGQHITLSHEDVEITLDLKTAASL  177 (273)
T ss_dssp             EEEECCTTSSTTSSEEEEEEEEECCCCCC-C----------CCTTEEEEEEEEEEEETTEEEEEETTEEEEEETTTCCBC
T ss_pred             EEEEcCCCCCCCceEEEEEEEEEeCCCCC-C----------CCcceeeEEEEEhhHhhhhhccccchhhhcccccccccc
Confidence            122211  112235677778777654321 1          12478899999999865543                   


Q ss_pred             C-CchHHHHHHHHHHHHHHHHHHHHhC
Q psy7748         182 R-GLPCFLTHSFIGNAKHQLLAALLKL  207 (232)
Q Consensus       182 ~-~~~~~l~~~~i~~~~~~l~~~l~~~  207 (232)
                      . .--+|..+.++..+..++...+...
T Consensus       178 ~~~~LafdH~~Il~~al~rlr~kl~y~  204 (273)
T 2fml_A          178 GKDTLAFDHSEIIIKAFNRVVDKMEHE  204 (273)
T ss_dssp             SSSCCSTTHHHHHHHHHHHHHHHTTTC
T ss_pred             CCCcccccHHHHHHHHHHHHHHHhcCC
Confidence            0 0112334556666767776665444

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A

Probab=99.69  E-value=2.3e-16  Score=120.84  Aligned_cols=42  Identities=36%  Similarity=0.586  Sum_probs=38.0

Q ss_pred             EEEEEEe-eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc
Q psy7748          75 NVLMQMR-FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK  116 (232)
Q Consensus        75 ~vLl~~R-~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~  116 (232)
                      ++|+++| .+|.|.||||++++|||+.+||+||++||||+.+.
T Consensus        13 ~vLL~~r~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~   55 (156)
T 1k2e_A           13 KVLLVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVE   55 (156)
T ss_dssp             EEEEEECTTTCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEE
T ss_pred             EEEEEEEcCCCcEECCeeecCCCCCHHHHHHHHHHHHHCCcce
Confidence            5677777 45899999999999999999999999999999987

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A

Probab=99.69  E-value=6.4e-17  Score=125.55  Aligned_cols=107  Identities=15%  Similarity=0.162  Sum_probs=72.9

Q ss_pred             cceEEEEEEecCCceEEEEeccCcEEEEEEee------CCeee-cceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeec
Q psy7748          51 YHASHCMIFAYNDDKIFATYTARANVLMQMRF------DGYIG-FPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDS  122 (232)
Q Consensus        51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~------~g~w~-lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~  122 (232)
                      +.++++++++.+           +++|+++|.      +|.|+ +|||++++|||+.+||+||++||||+.+. ..+...
T Consensus        34 ~~~v~v~i~~~~-----------~~vLl~~r~~~~~~~~g~w~~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~l~~~  102 (171)
T 1q27_A           34 VRVVNAFLRNSQ-----------GQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRPL  102 (171)
T ss_dssp             CEEEEEEEEETT-----------TEEEECCSCCSSSCCCCSCCCSEEEECSSSSCHHHHHHHHHHHHHSCTTSSSCEEEE
T ss_pred             ceEEEEEEECCC-----------CeEEEEEecCCCCCCCCccccccCccccCCCCHHHHHHHHHHHHHCCcccccceEEE
Confidence            556677777765           356777772      58898 99999999999999999999999999987 322111


Q ss_pred             eeeee-eecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         123 DLVCI-HYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       123 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                       ..+. +...... ..++|.+.. .+.+...          ..|..++.|+|++++.+++
T Consensus       103 -~~~~~~~~~~~~-~~~~f~~~~-~~~~~~~----------~~E~~~~~W~~~~el~~~~  149 (171)
T 1q27_A          103 -ASFSPFQTTLSS-FMCVYELRS-DATPIFN----------PNDISGGEWLTPEHLLARI  149 (171)
T ss_dssp             -EEECSSSSCCSS-EEEEEEEEC-CCCCCSC----------TTTCSCCEEECHHHHHHHH
T ss_pred             -EEEeccCCCCcc-EEEEEEEEE-CCccccC----------chhhheEEEecHHHHHHHH
Confidence             1111 1111122 567777766 3322211          2478899999999999764

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}

Probab=99.68  E-value=3.4e-16  Score=117.12  Aligned_cols=92  Identities=24%  Similarity=0.215  Sum_probs=65.7

Q ss_pred             EEEEEEee-----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCc
Q psy7748          75 NVLMQMRF-----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTD  148 (232)
Q Consensus        75 ~vLl~~R~-----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (232)
                      .+|+++|.     +|.|+||||++++||++++||.||++||||+.+. ...+....   +.....+...++|.+....+.
T Consensus        21 ~vLl~~r~~~~~~~g~w~lPgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~   97 (140)
T 2rrk_A           21 KILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGEYVASHQ---REVSGRIIHLHAWHVPDFHGT   97 (140)
T ss_dssp             EEEEEECCSSCSCCCCEECCEEECCTTSCHHHHHHHHHHHHSCEEEECCEEEEEEE---EEETTEEEEEEEEEESEEEEC
T ss_pred             EEEEEEcCCCCCCCCEEECCceecCCCCCHHHHHHHHHHHHHCCeeecccEEEEEE---EecCCcEEEEEEEEEEeeCCC
Confidence            56777773     4899999999999999999999999999999987 43333221   112233556677777654322


Q ss_pred             ccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         149 VLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       149 ~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      +.            ..|..++.|++++++.++.
T Consensus        98 ~~------------~~e~~~~~W~~~~el~~~~  118 (140)
T 2rrk_A           98 LQ------------AHEHQALVWCSPEEALQYP  118 (140)
T ss_dssp             CC------------CSSCSCEEEECHHHHTTSC
T ss_pred             cC------------CCccceeEEeCHHHHhhCC
Confidence            11            1366789999999999863

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*

Probab=99.67  E-value=1.8e-16  Score=116.85  Aligned_cols=92  Identities=23%  Similarity=0.399  Sum_probs=65.9

Q ss_pred             cEEEEEEee-----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecC
Q psy7748          74 ANVLMQMRF-----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKT  147 (232)
Q Consensus        74 ~~vLl~~R~-----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (232)
                      +++|+++|.     +|.|+||||++++||++.+||.||++||||+.+. ...+....   +.....+...++|.+....+
T Consensus        16 ~~vLl~~r~~~~~~~g~w~~PgG~~e~gE~~~~aa~RE~~EE~G~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~   92 (129)
T 1mut_A           16 NEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKLE---YEFPDRHITLWFWLVERWEG   92 (129)
T ss_dssp             TEEEEEECSSCCSSSCCEECCCCCSSSCSSTTHHHHHHHHTTTCCSSCEECCCCCCB---CCCSSCEEECCCEEEEECSS
T ss_pred             CEEEEEEeCCCCCCCCeEECCccCcCCCCCHHHHHHHHHHHHhCCccccceEEEEEE---EecCCceEEEEEEEEEccCC
Confidence            356777773     3899999999999999999999999999999987 43332221   11122345566777776543


Q ss_pred             cccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         148 DVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       148 ~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      .+.            ..|..++.|+|++++.++
T Consensus        93 ~~~------------~~e~~~~~W~~~~el~~~  113 (129)
T 1mut_A           93 EPW------------GKEGQPGEWMSLVGLNAD  113 (129)
T ss_dssp             CCC------------CCSSCCCEEEESSSCCTT
T ss_pred             ccC------------CcccceeEEeCHHHcccc
Confidence            221            136778999999999886

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}

Probab=99.64  E-value=6.3e-16  Score=132.64  Aligned_cols=113  Identities=22%  Similarity=0.288  Sum_probs=71.7

Q ss_pred             CCccceEEEEEEecCCceEEEEeccCcEEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeec
Q psy7748          48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDS  122 (232)
Q Consensus        48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~  122 (232)
                      +..+.++++++++.            +++|+++|.    +|.|++|||++|+|||+++||+||++||||+.+. ..+...
T Consensus       200 ~~~~~~v~~vi~~~------------~~vLL~~r~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~  267 (341)
T 2qjo_A          200 APTFITTDAVVVQA------------GHVLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRGS  267 (341)
T ss_dssp             CCCEEEEEEEEEET------------TEEEEEECCSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSSCHHHHHHT
T ss_pred             CCCceEEEEEEEeC------------CEEEEEEecCCCCCCeEECCCCcCCCCCCHHHHHHHHHhhhhCCcccccccccc
Confidence            34456677777642            256777773    5899999999999999999999999999999987 433221


Q ss_pred             ---eeeeeeec--CCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         123 ---DLVCIHYS--QSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       123 ---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                         ...+....  ...+...++|.+.+..+....       .. .+.|..++.|+|++++.++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-------~~-~~~e~~~~~W~~~~el~~~  322 (341)
T 2qjo_A          268 IVDSHVFDAPGRSLRGRTITHAYFIQLPGGELPA-------VK-GGDDAQKAWWMSLADLYAQ  322 (341)
T ss_dssp             EEEEEEECCTTSCTTSCEEEEEEEEECCSSSCCC-------CC-------CEEEEEHHHHHHT
T ss_pred             ccceEEEeCCCCCCCCcEEEEEEEEEecCCCcCc-------cC-CCCceeeEEEeeHHHHhhh
Confidence               11111111  122455667777665433110       01 1257889999999999985

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B

Probab=99.63  E-value=2.5e-15  Score=129.50  Aligned_cols=114  Identities=19%  Similarity=0.250  Sum_probs=73.7

Q ss_pred             CCccceEEEEEEecCCceEEEEeccCcEEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeee-
Q psy7748          48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKD-  121 (232)
Q Consensus        48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~-  121 (232)
                      +....+++++++. +           +++|+.+|.    +|.|++|||++|+|||+++||+||++||||+++. ..+.. 
T Consensus       205 ~~~~~~v~~vv~~-~-----------~~vLL~~r~~~~~~g~w~lPgG~ve~gEt~~~aa~REl~EEtGl~v~~~~~~~~  272 (352)
T 2qjt_B          205 KPNFVTVDALVIV-N-----------DHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQLAIA  272 (352)
T ss_dssp             CCEEEEEEEEEEE-T-----------TEEEEEEESSSSSTTCEECSEEECCTTSCHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred             CCCceEEEEEEEE-C-----------CEEEEEEEcCCCCCCeEECCCCcCCCCCCHHHHHHHHHHHhhCCCcccchhcce
Confidence            3445566666664 2           356777773    3899999999999999999999999999999987 32221 


Q ss_pred             --ceeeeeeecC--CcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeC-cccccc
Q psy7748         122 --SDLVCIHYSQ--SKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPL-YTMGDG  180 (232)
Q Consensus       122 --~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl-~el~~~  180 (232)
                        ....+.....  ..+...++|.+.+..+....      ... .+.|..++.|+|+ +++.++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~~-~~~E~~~~~W~~~~~el~~~  329 (352)
T 2qjt_B          273 KRCEKVFDYPDRSVRGRTISHVGLFVFDQWPSLP------EIN-AADDAKDVKWISLGSNIKNI  329 (352)
T ss_dssp             EEEEEEECCTTSCTTSEEEEEEEEEEECSCSSCC------CCC-CCTTEEEEEEEESSHHHHHT
T ss_pred             eeeeEEecCCCCCCCccEEEEEEEEEEeCCCCCC------ccC-CCccceEEEEecHHHHHHhh
Confidence              1111111111  22445666666665433000      011 1258899999999 999885

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*

Probab=99.63  E-value=1.3e-15  Score=127.04  Aligned_cols=110  Identities=15%  Similarity=0.172  Sum_probs=70.0

Q ss_pred             cceEEEEEEecCCceEEEEeccCcEEEEEEee--CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeee
Q psy7748          51 YHASHCMIFAYNDDKIFATYTARANVLMQMRF--DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCI  127 (232)
Q Consensus        51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~--~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~  127 (232)
                      ..++++++++.+.          +++|+.+|+  +|.|++|||++|+|||+++||+||++||||+++. +.... .+...
T Consensus       101 v~~v~avv~~~~~----------~~vLLv~r~~~~g~W~lPgG~ve~gEs~~eAA~REl~EEtGl~~~~l~~~~-~~~~~  169 (271)
T 2a6t_A          101 IPVRGAIMLDMSM----------QQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPN-EFIDM  169 (271)
T ss_dssp             CCEEEEEEBCSSS----------SEEEEEEESSTTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCCTT-CEEEE
T ss_pred             CCeEEEEEEECCC----------CEEEEEEEeCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCceeeeeee-eeccC
Confidence            3566777777532          356676763  5899999999999999999999999999999987 32221 22222


Q ss_pred             eecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         128 HYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      ...  . ...++|.+.......      ..... .+.|+.++.|+|++++.++.
T Consensus       170 ~~~--~-~~~~~f~~~~~~~~~------~~~~~-~~~E~~~~~W~~~~el~~~~  213 (271)
T 2a6t_A          170 TIR--G-QNVRLYIIPGISLDT------RFESR-TRKEISKIEWHNLMDLPTFK  213 (271)
T ss_dssp             EET--T-EEEEEEEECCCCTTC------CCC-------EEEEEEEEGGGSTTCC
T ss_pred             CcC--C-ceEEEEEEEEecCcc------cCCCC-CccceeEEEEEEHHHHHHHH
Confidence            221  1 234555554332110      00111 12589999999999999864

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}

Probab=99.60  E-value=3.5e-15  Score=125.61  Aligned_cols=143  Identities=16%  Similarity=0.118  Sum_probs=98.4

Q ss_pred             CCccceEEEEEEecCCceEEEEeccCcEEEEEEe------eCCee-ecceeecCCCCCHHHHHhHHHHHhhCCCCc-ce-
Q psy7748          48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMR------FDGYI-GFPGGLVDAGESPLEALNRELNEEINLNPK-YK-  118 (232)
Q Consensus        48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R------~~g~w-~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~-  118 (232)
                      .-...++.+.+++.++        ...++++++|      ++|+| .+|||++++||++.+||+||+.||+|+.+. .. 
T Consensus       115 G~~~~~vh~~~~~~~~--------~~~~lll~rRs~~K~~~PG~wd~svaG~i~~GEs~~eaA~REl~EElGI~~~~~~~  186 (300)
T 3dup_A          115 GVRAYGVHLNGYVGAG--------ADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQ  186 (300)
T ss_dssp             TCCEEEEEEEEEESCG--------GGCEEEEEEECTTCSSSTTCEEESEEEECCTTSCHHHHHHHHHHHHHCCCHHHHTT
T ss_pred             ceEEEEEEEEEEEecC--------CeeEEEEEeCCCcccCCCCccccccccCCCCCCCHHHHHHHHHHHHhCCChhhhhh
Confidence            5567788888888763        2237899999      67999 699999999999999999999999999875 22 


Q ss_pred             ---eeeceeeeeeecCCcEEEEEEEEEEeecCcc-cccccccccccCCCccceeeEeeeCcccccccCCchHHHHHHHHH
Q psy7748         119 ---VKDSDLVCIHYSQSKKIILHFYALQVEKTDV-LEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGLPCFLTHSFIG  194 (232)
Q Consensus       119 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~~~~~l~~~~i~  194 (232)
                         .....|......+......++|.+.+..+.. .+.          ++|+.++.|+|++++.+++.. |    ..|..
T Consensus       187 l~~~g~i~y~~~~~~G~~~E~~~vy~~~l~~~~~p~~~----------~~EV~~~~~v~~~El~~~l~~-p----g~F~p  251 (300)
T 3dup_A          187 AIPVGAITYCMESPAGIKPDTLFLYDLALPEDFRPHNT----------DGEMADFMLWPAAKVVEAVRT-T----EAFKF  251 (300)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECCTTCCCCCT----------TSSEEEEEEEEHHHHHHHHHH-C----CCBCT
T ss_pred             ccccceEEEEEecCCCeEEEEEEEEEEEecCCCcCCCC----------chHhheEEEECHHHHHHHHhc-C----CCcCc
Confidence               1111222211111134456667666653321 111          259999999999999988632 1    13445


Q ss_pred             HHHHHHHHHHHhCCCCCHH
Q psy7748         195 NAKHQLLAALLKLKILSPE  213 (232)
Q Consensus       195 ~~~~~l~~~l~~~~~~~~~  213 (232)
                      +....++..|...|+++++
T Consensus       252 ~~~lV~ldfl~RhG~i~~~  270 (300)
T 3dup_A          252 NVNLTVIDFAIRHGLIDPD  270 (300)
T ss_dssp             THHHHHHHHHHHTTSSCTT
T ss_pred             cHHHHHHHHHHHhCCcCCc
Confidence            5666677888889988877

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=99.59  E-value=3.5e-15  Score=129.48  Aligned_cols=109  Identities=17%  Similarity=0.081  Sum_probs=67.9

Q ss_pred             cCcEEEEEEee-CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeec-eeeeeeec---------CCcEEEEEE
Q psy7748          72 ARANVLMQMRF-DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDS-DLVCIHYS---------QSKKIILHF  139 (232)
Q Consensus        72 ~~~~vLl~~R~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~-~~~~~~~~---------~~~~~~~~~  139 (232)
                      ...+||+.+|. .|.|+||||++|+|||+++||+||++||||+.+. ..++.. .+.+....         .......++
T Consensus        36 ~~~~vLLv~r~~~g~W~lPgG~ve~gEs~~~AA~REl~EEtGl~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  115 (364)
T 3fjy_A           36 DSIEVCIVHRPKYDDWSWPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCEVEYPLSEEGKKTRHSHDCTADTKHTLY  115 (364)
T ss_dssp             TTEEEEEEEETTTTEEECCEEECCTTCCHHHHHHHHHHHHHSCCEEEEEEEEEEC---------------------CEEE
T ss_pred             CceEEEEEEcCCCCCEECCcCCCCCCCCHHHHHHHHHHHHhCCeeeeccccceEEEeccCCCcccccccccccCceEEEE
Confidence            44577887774 4899999999999999999999999999999987 433322 22221110         012456677


Q ss_pred             EEEEeecCccc--cc-ccccccccCCCccceeeEeeeCccccccc
Q psy7748         140 YALQVEKTDVL--EI-EKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       140 ~~~~~~~~~~~--~~-~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      |.+....+...  .. ........+ ..|+.++.|+|++++.+++
T Consensus       116 f~~~~~~~~~~~~l~~~~~~~~~~~-~~E~~~~~W~~~~e~~~~~  159 (364)
T 3fjy_A          116 WMAQPISADDAEHLLDAFGPVHRAD-VGEINDIVWVSVREARKIL  159 (364)
T ss_dssp             EEEEECCHHHHHTTHHHHCCCCCCC-TTTCCEEEEEEHHHHHHHC
T ss_pred             EEEEecCCccccccccccCccccCC-ccceeeeecCcHHHHHHHh
Confidence            77776543210  00 000000111 2488999999999999876

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*

Probab=99.59  E-value=2.5e-14  Score=120.52  Aligned_cols=153  Identities=14%  Similarity=0.036  Sum_probs=85.3

Q ss_pred             eecCCccCcc-ccccccCCcccccc---cCC--ccceEEEEEEecC---CceEEEEe---ccCcEEEEEEee-CCeeecc
Q psy7748          23 VYGRPSTNLN-DFIELTQSDLKDDK---YKS--GYHASHCMIFAYN---DDKIFATY---TARANVLMQMRF-DGYIGFP   89 (232)
Q Consensus        23 vy~~~~~~~~-~~~~~~~~~~~~~~---~~~--~~~a~~~vi~~~~---~~~v~~~~---~~~~~vLl~~R~-~g~w~lP   89 (232)
                      .|.+ ++.+. .....|.|+....-   ..+  ..+++.++|...+   .+.++...   ....++|+++|. .|.|+||
T Consensus        77 s~~g-~~~~~~g~p~np~Grtg~~gr~~l~~wgp~~a~~~vv~~~~~~~~g~~~~~~~~g~~~l~vLl~~r~~~g~W~lP  155 (292)
T 1q33_A           77 SKNG-LYEIENGRPRNPAGRTGLVGRGLLGRWGPNHAADPIITRWKRDSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIP  155 (292)
T ss_dssp             CTTS-CCCEETTEECCTTCCCSEEEEETCSSSEEEEEEEEEEEEECBCTTSCBCBCTTTCSBCEEEEEEECTTTCSEECC
T ss_pred             eccc-ceeccCCcccCCCccccccCcccccccCccccceeeeeeecccccCceeeeccCCCCceEEEEEEecCCCcEeCC
Confidence            4555 56666 44445555422111   122  2346776665532   12111110   122368888884 4899999


Q ss_pred             eeecCCCCCHHHHHhHHHHHhhCCCC------------c-ceeee----ceeeeeeecC----CcEEEEEEEEEEeecCc
Q psy7748          90 GGLVDAGESPLEALNRELNEEINLNP------------K-YKVKD----SDLVCIHYSQ----SKKIILHFYALQVEKTD  148 (232)
Q Consensus        90 gG~ve~gEs~~~aa~REl~EEtGl~~------------~-~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~~~  148 (232)
                      ||+|++||++.+||+||++||||+.+            . ..+..    ..|.......    ......++|.+....+.
T Consensus       156 GG~Ve~GEs~~eAA~REl~EETGl~~~~~~~~~~~l~~~l~~l~~~~g~~vy~~~~~dpr~~d~~~~~~~~f~~~~~~g~  235 (292)
T 1q33_A          156 GGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGE  235 (292)
T ss_dssp             CEECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCTTCCSSEEEEEEEEEEEESSST
T ss_pred             CcccCCCCCHHHHHHHHHHHHhCCccccccccchhhHHHHHHHhhcccceeecccccCCCCCcccEEEEEEEEEEeCCCc
Confidence            99999999999999999999999983            2 11111    1121111111    12445556665543332


Q ss_pred             ccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         149 VLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       149 ~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      .....    ... .+.|..++.|+++++++++.
T Consensus       236 ~~~~~----~~~-~~~E~~~~~W~~~del~~L~  263 (292)
T 1q33_A          236 IMDNL----MLE-AGDDAGKVKWVDINDKLKLY  263 (292)
T ss_dssp             TTTTC----CCC-CCTTCSEEEEEECCTTCCCS
T ss_pred             ccccc----ccC-CCCccceEEEEEcccCcccC
Confidence            21100    011 23578999999999998754

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3

Probab=99.59  E-value=3.2e-15  Score=114.12  Aligned_cols=91  Identities=19%  Similarity=0.184  Sum_probs=64.1

Q ss_pred             cEEEEEEee-----CCeeecceeecCCCCCHH-HHHhHHHHHhhC-CCCc-ceeeec-eeeeeeecCCcEEEEEEEEEEe
Q psy7748          74 ANVLMQMRF-----DGYIGFPGGLVDAGESPL-EALNRELNEEIN-LNPK-YKVKDS-DLVCIHYSQSKKIILHFYALQV  144 (232)
Q Consensus        74 ~~vLl~~R~-----~g~w~lPgG~ve~gEs~~-~aa~REl~EEtG-l~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  144 (232)
                      +.+|+++|.     +|.|+||||.++.||++. +||.||++|||| +.+. ...+.. .+.+    ...+...++|.+.+
T Consensus        34 ~~vLl~~R~~~~~~~g~w~~PgG~~e~gE~~~~~a~~REl~EE~g~l~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~  109 (155)
T 1x51_A           34 AQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGEVVHTF----SHIKLTYQVYGLAL  109 (155)
T ss_dssp             EEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCBCCBC----SSCEEEEEEEEEEC
T ss_pred             CEEEEEECCCCCCCCceecCCccccCCCCCHHHHHHHHHHHHHhCCcceeeeeecceEEEec----CCccEEEEEEEEEE
Confidence            467888883     379999999999999996 999999999999 8776 333322 2221    12345667787776


Q ss_pred             ecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         145 EKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      ..+.+..            .|..++.|++++++.++
T Consensus       110 ~~~~~~~------------~e~~~~~W~~~~el~~~  133 (155)
T 1x51_A          110 EGQTPVT------------TVPPGARWLTQEEFHTA  133 (155)
T ss_dssp             SSCCCCC------------CCCTTEEEEEHHHHHHS
T ss_pred             cCCCCCC------------CCCCccEEccHHHhhhc
Confidence            5332211            24567899999999875

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*

Probab=99.59  E-value=5.8e-15  Score=120.68  Aligned_cols=112  Identities=13%  Similarity=0.076  Sum_probs=75.3

Q ss_pred             CccceEEEEEEecCCceEEEEeccCcEEEEEEe------eCCeeecc-eeecCCC------CCH---HHHHhHHHHHhhC
Q psy7748          49 SGYHASHCMIFAYNDDKIFATYTARANVLMQMR------FDGYIGFP-GGLVDAG------ESP---LEALNRELNEEIN  112 (232)
Q Consensus        49 ~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R------~~g~w~lP-gG~ve~g------Es~---~~aa~REl~EEtG  112 (232)
                      -.++++++++++.+           ++||+++|      ++|.|.+| ||++++|      |++   .+||+||++||||
T Consensus        57 ~~h~av~v~v~~~~-----------g~lLLq~R~~~k~~~pg~W~~p~gG~v~~Ge~E~~~E~~~~~~~Aa~REl~EElG  125 (235)
T 2dho_A           57 LLHRAFSVFLFNTE-----------NKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELG  125 (235)
T ss_dssp             CCEEEEEEEEECTT-----------CCEEEEEECTTCSSSTTCEESSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHC
T ss_pred             ceEEEEEEEEEcCC-----------CEEEEEEecCcCCCCCCcEEeccCceecCCCcccccccchhHHHHHHHHHHHHHC
Confidence            35677788888765           35788888      45899999 5999999      884   9999999999999


Q ss_pred             CCCc-c-----eeeec-eeeeeeecC-CcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccccC
Q psy7748         113 LNPK-Y-----KVKDS-DLVCIHYSQ-SKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFR  182 (232)
Q Consensus       113 l~~~-~-----~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~  182 (232)
                      +.+. +     ..+.. .|....... ..+.+.++|.+... ..+.+.          ..|+.++.|++++++.+++.
T Consensus       126 i~~~~v~~~~l~~l~~~~y~~~~~~~~~~~e~~~vf~~~~~-~~~~~~----------~~Ev~~~~wv~~~el~~~l~  192 (235)
T 2dho_A          126 IPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRMN-VTLNPD----------PNEIKSYCYVSKEELKELLK  192 (235)
T ss_dssp             CCGGGSCGGGSEEEEEEEEEEECSSSBEEEEEEEEEEEECC-CCCCCC----------TTTEEEEEEECHHHHHHHHH
T ss_pred             CCccccChhhcEEEEEEEEeccCCCccceeEEEEEEEEEEC-CCCcCC----------hHHEEEEEEEcHHHHHHHHh
Confidence            9864 2     22222 122211111 12445667777653 222221          25899999999999998763

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}

Probab=99.57  E-value=1.1e-14  Score=119.76  Aligned_cols=112  Identities=13%  Similarity=0.065  Sum_probs=75.3

Q ss_pred             CccceEEEEEEecCCceEEEEeccCcEEEEEEe------eCCeeecce-eecCCC------CCH---HHHHhHHHHHhhC
Q psy7748          49 SGYHASHCMIFAYNDDKIFATYTARANVLMQMR------FDGYIGFPG-GLVDAG------ESP---LEALNRELNEEIN  112 (232)
Q Consensus        49 ~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R------~~g~w~lPg-G~ve~g------Es~---~~aa~REl~EEtG  112 (232)
                      -.++++++++++.+           ++||+++|      ++|.|.+|+ |++++|      |++   ++||+||++||||
T Consensus        68 ~~h~av~v~v~~~~-----------g~lLLqrRs~~K~~~pG~W~~p~gG~v~~G~~E~~~Et~~~~~eAA~REl~EElG  136 (246)
T 2pny_A           68 LLHRAFSVVLFNTK-----------NRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELG  136 (246)
T ss_dssp             CCEEEEEEEEECTT-----------CCEEEEEECTTCSSSTTCBCCSEEECCBSSHHHHCCGGGHHHHHHHHHHHHHHHC
T ss_pred             cEEEEEEEEEEeCC-----------CEEEEEEecCCCCCCCCceEeccCceeccCCcccccccchhHHHHHHHHHHHHHC
Confidence            45667788888755           35788888      458999995 999999      887   9999999999999


Q ss_pred             CCCc-c-----eeeec-eeeeeeecC-CcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccccC
Q psy7748         113 LNPK-Y-----KVKDS-DLVCIHYSQ-SKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFR  182 (232)
Q Consensus       113 l~~~-~-----~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~  182 (232)
                      +.+. +     ..+.. .|....... ..+.+.++|.+... ..+.+.          ..|+.++.|++++++.+++.
T Consensus       137 i~~~~v~~~~l~~l~~~~y~~~~~~~~~~~e~~~vf~~~~~-~~~~~~----------~~Ev~~~~wv~~eel~~~l~  203 (246)
T 2pny_A          137 IPGEQISPEDIVFMTIYHHKAKSDRIWGEHEICYLLLVRKN-VTLNPD----------PSETKSILYLSQEELWELLE  203 (246)
T ss_dssp             CCTTTCCGGGSEEEEEEEEEEESSSSBEEEEEEEEEEEECC-CCCCCC----------TTTEEEEEEECHHHHHHHHH
T ss_pred             CCccccCccccEEEEEEEEEecCCCceeeeEEEEEEEEEEC-CCCCCC----------hHHeeEEEEEeHHHHHHHHH
Confidence            9864 2     22221 122111111 12445666776643 222221          25899999999999998763

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}

Probab=99.57  E-value=2e-15  Score=120.92  Aligned_cols=113  Identities=16%  Similarity=0.165  Sum_probs=71.8

Q ss_pred             CCccceEEEEEEecCCceEEEEeccCcEEEEEEee--------CCeeec-ceeecCCCCC--H----HHHHhHHHHHhhC
Q psy7748          48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMRF--------DGYIGF-PGGLVDAGES--P----LEALNRELNEEIN  112 (232)
Q Consensus        48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~--------~g~w~l-PgG~ve~gEs--~----~~aa~REl~EEtG  112 (232)
                      +.++..+..+++..+           +++|+.+|.        .|.|.+ |||+||+|||  +    ++||+||++||||
T Consensus        64 ~~~~q~i~~~II~~~-----------grvLl~~R~~~~~e~~~~g~w~~gPGGhVE~GEs~~p~EtleeAa~REl~EEtG  132 (211)
T 3e57_A           64 ETTKQVIPYVVIMDG-----------DRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVNEEVD  132 (211)
T ss_dssp             TTEEEEEEEEEEEET-----------TEEEEEEC------------CBSSEECCCBGGGCSSHHHHHHHHHHHHHHHHEE
T ss_pred             CcccceEEEEEEEEC-----------CEEEEEEECCCCCcccccCCcccccceEEeCCCCCCchhhHHHHHHHHHHHHhC
Confidence            344555555555544           357777772        157998 9999999998  5    9999999999999


Q ss_pred             CCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccccCCc
Q psy7748         113 LNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGL  184 (232)
Q Consensus       113 l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~~  184 (232)
                      +++. ..+.+.........+. ..+.++|.|....+.+  .+          .|..++.|+++++++++...+
T Consensus       133 l~v~~~~~ig~~~~~~~~~~~-~~l~~~f~~~~~~g~~--~~----------~E~~~~~W~~~~eL~~~~~~l  192 (211)
T 3e57_A          133 VSLRELEFLGLINSSTTEVSR-VHLGALFLGRGKFFSV--KE----------KDLFEWELIKLEELEKFSGVM  192 (211)
T ss_dssp             EEEEEEEEEEEEECCSSHHHH-TEEEEEEEEEEEEEEE--SC----------TTTCEEEEEEHHHHHHHGGGC
T ss_pred             CeeeccEEEEEEeccCCCCCe-EEEEEEEEEEeCCcee--CC----------CCeEEEEEEEHHHHHHhHhhc
Confidence            9876 4444332221111111 2344567777653322  11          467799999999999875444

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=99.43  E-value=6.8e-13  Score=115.29  Aligned_cols=88  Identities=17%  Similarity=0.066  Sum_probs=65.1

Q ss_pred             cEEEEEEee-----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecC
Q psy7748          74 ANVLMQMRF-----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKT  147 (232)
Q Consensus        74 ~~vLl~~R~-----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (232)
                      +.+|+++|.     +|.|+||||++|.| ++++|+.||++||||+.+. ...+...   .+.....+...++|.+....+
T Consensus       252 g~vLL~rR~~~g~~~GlWefPGG~ve~g-t~~~al~REl~EE~Gl~v~~~~~l~~~---~h~~~h~~~~~~~~~~~~~~~  327 (369)
T 3fsp_A          252 GRVLIRKRDSTGLLANLWEFPSCETDGA-DGKEKLEQMVGEQYGLQVELTEPIVSF---EHAFSHLVWQLTVFPGRLVHG  327 (369)
T ss_dssp             SEEEEEECCSSSTTTTCEECCEEECSSS-CTHHHHHHHHTTSSSCCEEECCCCCEE---EEECSSEEEEEEEEEEEECCS
T ss_pred             CEEEEEECCCCCCcCCcccCCCcccCCC-CcHHHHHHHHHHHhCCceeeecccccE---EEEcceEEEEEEEEEEEEcCC
Confidence            467888883     48999999999999 9999999999999999987 4322211   112223356777888776432


Q ss_pred             cccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         148 DVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       148 ~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                                     ..|..++.|++++++.+.
T Consensus       328 ---------------~~e~~~~~Wv~~~el~~~  345 (369)
T 3fsp_A          328 ---------------GPVEEPYRLAPEDELKAY  345 (369)
T ss_dssp             ---------------SCCCTTEEEEEGGGGGGS
T ss_pred             ---------------CCCccccEEeeHHHhhhC
Confidence                           135668999999999885

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.39  E-value=1.1e-12  Score=106.70  Aligned_cols=61  Identities=25%  Similarity=0.364  Sum_probs=47.9

Q ss_pred             CccceEEEEEEecCCceEEEEeccCcEEEEEEe------eCCeeecceeecCCCCC--------------------HHHH
Q psy7748          49 SGYHASHCMIFAYNDDKIFATYTARANVLMQMR------FDGYIGFPGGLVDAGES--------------------PLEA  102 (232)
Q Consensus        49 ~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R------~~g~w~lPgG~ve~gEs--------------------~~~a  102 (232)
                      ..++++++|+++....       ...+||+.+|      ++|.|.||||+||++|+                    +..|
T Consensus         6 ~~r~aA~lill~~~~~-------g~~~vLl~~R~~~~~~~~g~~~fPGG~vd~~d~~~~~~~~g~~~~~~~~~~~a~~~a   78 (232)
T 3qsj_A            6 DIRKAATLVVIRDGAN-------KDIEVLVVRRAKTMRFLPGFVAFPGGAADPSDAEMAKRAFGRPVCAEDDDDPALAVT   78 (232)
T ss_dssp             CEEEEEEEEEEEECGG-------GCEEEEEEEECTTCSSSTTCEECSEEECCHHHHHHHHTCBSCCBTCCSTTHHHHHHH
T ss_pred             CCcceEEEEEEEcCCC-------CCeEEEEEEccCCCCCCCCcEECCceeEecCCCCchhhhcccccccccchhhHHHHH
Confidence            4577888887775421       0137888888      25899999999999996                    5899


Q ss_pred             HhHHHHHhhCCCCc
Q psy7748         103 LNRELNEEINLNPK  116 (232)
Q Consensus       103 a~REl~EEtGl~~~  116 (232)
                      |+||++||||+.+.
T Consensus        79 AiRE~~EE~Gl~l~   92 (232)
T 3qsj_A           79 ALRETAEEIGWLLA   92 (232)
T ss_dssp             HHHHHHHHHSCCCS
T ss_pred             HHHHHHHHhCceec
Confidence            99999999999865

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A

Probab=99.14  E-value=4.4e-10  Score=88.43  Aligned_cols=114  Identities=15%  Similarity=0.188  Sum_probs=71.0

Q ss_pred             CCccceEEEEEEecCCceEEEEeccCcEEEEEEeeCCeeecceeecCCCCCHHHHHhHHHHHhhCC------CCc-ceee
Q psy7748          48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINL------NPK-YKVK  120 (232)
Q Consensus        48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl------~~~-~~~~  120 (232)
                      -+.|..|.++++..+.+        ..+||+.++..+.|.||||++++||++++|++|||.||+|.      +.. ...+
T Consensus        55 ~g~R~sV~avil~~~~~--------~phVLLlq~~~~~f~LPGGkle~gE~~~eaL~REL~EELg~~~~~~~~~eIge~l  126 (208)
T 3bho_A           55 IGMRRTVEGVLIVHEHR--------LPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCI  126 (208)
T ss_dssp             HCSEEEEEEEEEEEETT--------EEEEEEEEEETTEEECSEEECCTTCCHHHHHHHHHHHHHCCCC-----CEEEEEE
T ss_pred             hCCceEEEEEEEEcCCC--------CcEEEEEEcCCCcEECCCcccCCCCCHHHHHHHHHHHHhCCCcCCCccEEEhheE
Confidence            45677777776654322        12566666678899999999999999999999999999994      333 2334


Q ss_pred             eceeeeeeecC----------CcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         121 DSDLVCIHYSQ----------SKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       121 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      +.+|...+...          ....+.-+|.+.+.....-..           .....+.-+|+=+|-+.
T Consensus       127 g~wwRp~fet~~YPYlP~Hit~pKE~~kly~V~Lp~~~~f~v-----------Pkn~kL~AvPLfely~N  185 (208)
T 3bho_A          127 GNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAV-----------PKNYKLVAAPLFELYDN  185 (208)
T ss_dssp             EEEEECSSSSCCBSSCCTTCCSCSEEEEEEEEECCSSEEEEE-----------ETTCEEEEEEHHHHTTC
T ss_pred             EEEecCCCCCcCCCCCCcccCchhhheeeeeEecCccceEec-----------CCCCeEEeecHHhhhcc
Confidence            44443222110          224555666766654321111           13456777777776653

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}

Probab=99.03  E-value=3.4e-10  Score=96.24  Aligned_cols=81  Identities=10%  Similarity=-0.036  Sum_probs=55.8

Q ss_pred             cEEEEEEeeCCeeecceeecCCCCCHHHHHhHHHHHhh-CCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcccc
Q psy7748          74 ANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEI-NLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLE  151 (232)
Q Consensus        74 ~~vLl~~R~~g~w~lPgG~ve~gEs~~~aa~REl~EEt-Gl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (232)
                      ++|||+ ...| |.||||.++  ++..++|+||++||| |+.+. ..+...+ ...    ....+.++|.|.+..++   
T Consensus       194 g~vLL~-~~~G-W~LPG~~~~--~~~~~~a~RE~~EEttGl~v~~~~L~~v~-~~~----~~~~~~i~f~~~~~~g~---  261 (321)
T 3rh7_A          194 GAVFLA-GNET-LSLPNCTVE--GGDPARTLAAYLEQLTGLNVTIGFLYSVY-EDK----SDGRQNIVYHALASDGA---  261 (321)
T ss_dssp             SCEEEB-CSSE-EBCCEEEES--SSCHHHHHHHHHHHHHSSCEEEEEEEEEE-ECT----TTCCEEEEEEEEECSSC---
T ss_pred             CEEEEe-eCCC-ccCCcccCC--CChhHHHHHHHHHHhcCCEEeeceEEEEE-EcC----CCceEEEEEEEEeCCCC---
Confidence            356666 4457 999988665  444459999999997 99998 4444332 211    12334578888775432   


Q ss_pred             cccccccccCCCccceeeEeeeCcccccc
Q psy7748         152 IEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       152 ~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                                    ..++.||++++|+..
T Consensus       262 --------------~~e~~~f~~~elp~~  276 (321)
T 3rh7_A          262 --------------PRQGRFLRPAELAAA  276 (321)
T ss_dssp             --------------CSSSEEECHHHHTTC
T ss_pred             --------------eeeeEEECHHHCCCc
Confidence                          357999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	232
d1u20a1	196	d.113.1.1 (A:14-209) U8 snorna-binding protein x29	1e-53
d1vcda1	126	d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus t	3e-09
d1irya_	156	d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphospha	1e-07
d2fmla2	202	d.113.1.6 (A:3-204) Hypothetical protein EF2700, N	2e-07
d1sjya_	158	d.113.1.1 (A:) Hypothetical protein DR1025 {Deinoc	5e-07
d1xsba_	153	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	5e-07
d2azwa1	147	d.113.1.1 (A:2-148) Hypothetical protein EF1141 {E	6e-07
d2a6ta2	151	d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p c	1e-06
d2fvva1	135	d.113.1.1 (A:8-142) Diphosphoinositol polyphosphat	3e-06
d1q33a_	292	d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyr	8e-06
d1k2ea_	152	d.113.1.1 (A:) Hypothetical protein PAE3301 {Archa	1e-05
d2b0va1	146	d.113.1.1 (A:4-149) Hypothetical protein NE0184 {N	2e-05
d1nqza_	187	d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinoco	9e-05
d2fb1a2	147	d.113.1.6 (A:3-149) Hypothetical protein BT0354, N	6e-04
d1jkna_	165	d.113.1.1 (A:) Diadenosine tetraphosphate hydrolas	8e-04
d1vk6a2	131	d.113.1.4 (A:126-256) NADH pyrophosphatase {Escher	0.002
d1v8ya_	158	d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus	0.004
d1ryaa_	160	d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD	0.004

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 196

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score =  169 bits (428), Expect = 1e-53
 Identities = 73/178 (41%), Positives = 104/178 (58%), Gaps = 4/178 (2%)

Query: 49  SGY-HASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLE-ALNRE 106
            GY HA H ++ A +  K+F     R  +LM MRFDG +GFPGG VD  +  LE  L RE
Sbjct: 17  EGYKHACHALLHAPSQAKLFDRVPIRRVLLMMMRFDGRLGFPGGFVDTRDISLEEGLKRE 76

Query: 107 LNEEINLNPKY-KVKDSDLVCIH-YSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGV 164
           L EE+       +V + D          +K + HFY  +++  ++  IE  A+ + D+G+
Sbjct: 77  LEEELGPALATVEVTEDDYRSSQVREHPQKCVTHFYIKELKLEEIERIEAEAVNAKDHGL 136

Query: 165 EVLGTVRVPLYTMGDGFRGLPCFLTHSFIGNAKHQLLAALLKLKILSPEEINQALNAK 222
           EV+G +RVPLYT+ D   GLP FL ++FIGN+K QLL AL  LK+L  ++I + L A 
Sbjct: 137 EVMGLIRVPLYTLRDRVGGLPAFLCNNFIGNSKSQLLYALRSLKLLREDQIQEVLKAS 194

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]} Length = 126

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

 Score = 51.5 bits (123), Expect = 3e-09
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 76  VLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQSKKI 135
           VL+     G+  FP G  + GES  EA  RE+ EE  +  +  +           +  + 
Sbjct: 16  VLLLRDRMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEV-LLPLYPTRYVNPKGVER 74

Query: 136 ILHFYALQVEKTDVLEIE 153
            +H++ ++ E    LE  
Sbjct: 75  EVHWFLMRGEGAPRLEEG 92

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (113), Expect = 1e-07
 Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 5/69 (7%)

Query: 76  VLMQMR----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQ 131
           VL+ M+      G     GG V  GE+  +   REL EE  L     +     +   +  
Sbjct: 18  VLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVD-ALHKVGQIVFEFVG 76

Query: 132 SKKIILHFY 140
             +++    
Sbjct: 77  EPELMDVHV 85

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]} Length = 202

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

 Score = 47.9 bits (113), Expect = 2e-07
 Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 12/111 (10%)

Query: 45  DKYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMR----FDGYIGFPGGLVDAGESPL 100
            +Y+        ++  YN +        +  VL+  R    F      PGG V+  ES  
Sbjct: 31  PEYEKPSLTVDMVLLCYNKE------ADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTE 84

Query: 101 EALNRELNEEINLNPKYKVKDSDLVCIHYSQS--KKIILHFYALQVEKTDV 149
           +++ RE  EE  +    +  +         +     ++   Y   + +  +
Sbjct: 85  DSVLRETKEETGVVISQENIEQLHSFSRPDRDPRGWVVTVSYLAFIGEEPL 135

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 45.9 bits (108), Expect = 5e-07
 Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 1/81 (1%)

Query: 73  RANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQS 132
              +       G    P G V+ GE+P +A  RE  EE  L  +  VK        +   
Sbjct: 31  EKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRP-VKFLGAYLGRFPDG 89

Query: 133 KKIILHFYALQVEKTDVLEIE 153
             I+ H +  + E    L   
Sbjct: 90  VLILRHVWLAEPEPGQTLAPA 110

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Length = 153

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 5e-07
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 4/94 (4%)

Query: 56  CMIFAYNDDKIFATYTARANVLMQMRFDG--YIGFPGGLVDAGESPLEALNRELNEEINL 113
           C +  +    I          L+    DG  +   P G V+ GE  LE   R   EE  +
Sbjct: 11  CGLIIFRRCLIPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGI 70

Query: 114 NPK--YKVKDSDLVCIHYSQSKKIILHFYALQVE 145
                  ++       + +++K   + ++  +V+
Sbjct: 71  EAGQLTIIEGFKRELNYVARNKPKTVIYWLAEVK 104

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

 Score = 45.6 bits (107), Expect = 6e-07
 Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 76  VLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQSKK- 134
           +++    +G    PGG ++  E+  EA++RE+ EE+ ++ +      +     YS  ++ 
Sbjct: 32  MVLVQAPNGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYSNHRQT 91

Query: 135 ---IILHFYALQVEKTDVLEIE 153
                 +FY     +     +E
Sbjct: 92  AYYNPGYFYVANTWRQLSEPLE 113

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]} Length = 151

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 44.8 bits (105), Expect = 1e-06
 Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 4/78 (5%)

Query: 76  VLMQMRF--DGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQSK 133
            ++   +      GFP G +D  ES ++   RE+ EE   +   ++       I  +   
Sbjct: 17  CVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRIN--PNEFIDMTIRG 74

Query: 134 KIILHFYALQVEKTDVLE 151
           + +  +    +      E
Sbjct: 75  QNVRLYIIPGISLDTRFE 92

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (101), Expect = 3e-06
 Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 16/103 (15%)

Query: 45  DKYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMRFD-GYIGFPGGLVDAGESPLEAL 103
           D YK     + C+ F    ++          +L+           PGG ++  E P  A 
Sbjct: 8   DGYK---KRAACLCFRSESEEEV--------LLVSSSRHPDRWIVPGGGMEPEEEPSVAA 56

Query: 104 NRELNEEINLNPKYKVKDSDLVCIHYSQSKKIILHFYALQVEK 146
            RE+ EE  +    K     LV I  +Q +K   + Y L V +
Sbjct: 57  VREVCEEAGV----KGTLGRLVGIFENQERKHRTYVYVLIVTE 95

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (102), Expect = 8e-06
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 4/101 (3%)

Query: 76  VLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKY----KVKDSDLVCIHYSQ 131
           V ++ +  G    PGG+VD GE     L RE  EE   + +     K +  + +   +SQ
Sbjct: 142 VAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQ 201

Query: 132 SKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRV 172
              +I   Y      TD   +E  A+  HD   E++  + +
Sbjct: 202 DHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIMDNLML 242

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 152

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 41.4 bits (96), Expect = 1e-05
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 76  VLMQMRFD-GYIGFPGGLVDAGESPLEALNRELNEEINLNPKY 117
           VL+      G   +PGG V+  E+P+EA+ RE  EE  +  + 
Sbjct: 14  VLLVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEP 56

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]} Length = 146

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

 Score = 40.9 bits (95), Expect = 2e-05
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 4/77 (5%)

Query: 76  VLMQMRFD----GYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQ 131
            L+           +  P G ++ GES ++A +RE+ EE   +   +V          S 
Sbjct: 16  YLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCASN 75

Query: 132 SKKIILHFYALQVEKTD 148
               +   ++ QV   D
Sbjct: 76  GTTYLRFTFSGQVVSFD 92

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]} Length = 187

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 39.8 bits (92), Expect = 9e-05
 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 3/93 (3%)

Query: 50  GYHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNE 109
            Y  +  ++    +       T R++ L   +  G I FPGG +DAGE+P +A  RE  E
Sbjct: 29  HYRRAAVLVALTREADPRVLLTVRSSELPTHK--GQIAFPGGSLDAGETPTQAALREAQE 86

Query: 110 EINLNPKYKVKDSDLVCIHYSQSKKIILHFYAL 142
           E+ L+P   V     +   ++     +      
Sbjct: 87  EVALDP-AAVTLLGELDDVFTPVGFHVTPVLGR 118

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 147

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 36.7 bits (84), Expect = 6e-04
 Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 12/98 (12%)

Query: 56  CMIFAYNDDKIFATYTARANVLMQMR----FDGYIGFPGGLVDAGESPLEALNRELNEEI 111
           C+IF +N+ +I        ++L+  R      G     GG V   ES  +A  R L E  
Sbjct: 15  CIIFGFNEGEI--------SLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELT 66

Query: 112 NLNPKYKVKDSDLVCIHYSQSKKIILHFYALQVEKTDV 149
            L   Y  +      I     ++++   Y   +   + 
Sbjct: 67  GLENVYMEQVGAFGAIDRDPGERVVSIAYYALININEY 104

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]} Length = 165

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

 Score = 36.7 bits (84), Expect = 8e-04
 Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 76  VLMQMRFD--GYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQSK 133
           +    R D       P G +D GE P  A  REL EE  +     + +     + Y    
Sbjct: 28  IFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVP-YWLTYDFPP 86

Query: 134 KIILHFY 140
           K+     
Sbjct: 87  KVREKLN 93

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]} Length = 131

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

 Score = 34.7 bits (79), Expect = 0.002
 Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 7/77 (9%)

Query: 76  VLMQMRF---DGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQS 132
           +L+       +G      G V+ GE+  +A+ RE+ EE       KVK+   V       
Sbjct: 16  ILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESG----IKVKNLRYVTSQPWPF 71

Query: 133 KKIILHFYALQVEKTDV 149
            + ++  +  + +  D+
Sbjct: 72  PQSLMTAFMAEYDSGDI 88

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]} Length = 158

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

 Score = 34.7 bits (79), Expect = 0.004
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 5/101 (4%)

Query: 43  KDDKYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEA 102
            + +Y+   H     + A  + ++      R  V         +  P GL++ GE PLEA
Sbjct: 14  LEGRYEIVEHKPAVAVIALREGRMLFVRQMRPAV-----GLAPLEIPAGLIEPGEDPLEA 68

Query: 103 LNRELNEEINLNPKYKVKDSDLVCIHYSQSKKIILHFYALQ 143
             REL E+  L+       S  V   ++  K  +     L+
Sbjct: 69  ARRELAEQTGLSGDLTYLFSYFVSPGFTDEKTHVFLAENLK 109

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]} Length = 160

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

 Score = 34.4 bits (78), Expect = 0.004
 Identities = 19/94 (20%), Positives = 26/94 (27%), Gaps = 4/94 (4%)

Query: 76  VLMQMR----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQ 131
            L+  R      GY   PGG V   E+   A  R    E+ L           V  H+  
Sbjct: 32  FLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYD 91

Query: 132 SKKIILHFYALQVEKTDVLEIEKGALTSHDYGVE 165
                  F    V       + +  L   D   +
Sbjct: 92  DNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHD 125

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	232
d1u20a1	196	U8 snorna-binding protein x29 {African clawed frog	99.96
d1vhza_	186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.92
d1mqea_	202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.91
d1g0sa_	209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	99.86
d1vcda1	126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.85
d2fb1a2	147	Hypothetical protein BT0354, N-terminal domain {Ba	99.84
d1vk6a2	131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.84
d1v8ya_	158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.84
d1viua_	189	ADP-ribose pyrophosphatase homologue YffH {Escheri	99.82
d1ktga_	137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.81
d1hzta_	153	Isopentenyl diphosphate isomerase {Escherichia col	99.8
d2fvva1	135	Diphosphoinositol polyphosphate phosphohydrolase {	99.8
d1jkna_	165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.79
d1sjya_	158	Hypothetical protein DR1025 {Deinococcus radiodura	99.79
d2a6ta2	151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.79
d2b0va1	146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.78
d2azwa1	147	Hypothetical protein EF1141 {Enterococcus faecalis	99.78
d1xsba_	153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.78
d2fmla2	202	Hypothetical protein EF2700, N-terminal domain {En	99.78
d1irya_	156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.78
d1nqza_	187	Coenzyme A pyrophosphatase {Deinococcus radioduran	99.77
d1ryaa_	160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.77
d2b06a1	155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.77
d1puna_	129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.75
d2fkba1	161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.75
d2o5fa1	162	Hypothetical protein DR0079 {Deinococcus radiodura	99.73
d1k2ea_	152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.73
d1q33a_	292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	99.49
d1rrqa2	127	Adenine glycosylase MutY, C-terminal domain {Bacil	99.48
d1x51a1	142	A/G-specific adenine DNA glycosylase {Human (Homo	99.04

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: U8 snorna-binding protein x29
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.96  E-value=2.9e-30  Score=203.16  Aligned_cols=180  Identities=39%  Similarity=0.644  Sum_probs=152.4

Q ss_pred             ccccCCccceEEEEEEecCCceEEEEeccCcEEEEEEeeCCeeecceeecCCCCC-HHHHHhHHHHHhhCCCCc-ceeee
Q psy7748          44 DDKYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGES-PLEALNRELNEEINLNPK-YKVKD  121 (232)
Q Consensus        44 ~~~~~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~g~w~lPgG~ve~gEs-~~~aa~REl~EEtGl~~~-~~~~~  121 (232)
                      .....+++++|.++++.++..++++....+..+|+|+|++|.|+||||++++||+ +++||.||++||||+.+. ..+..
T Consensus        13 ~~~~~g~r~a~~~~~~~~~~~~~~~~~~~~~~vl~~~r~~g~~~~pgg~~~~~e~~~~~~~~re~~ee~g~~~~~~~l~~   92 (196)
T d1u20a1          13 SLQLEGYKHACHALLHAPSQAKLFDRVPIRRVLLMMMRFDGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTE   92 (196)
T ss_dssp             HHSCSSCEEEEEEEEEEECCCEETTTEECCEEEEEEEETTSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCCCCG
T ss_pred             hhccCCcceEEEEEEEcCCCceEEEEecCCcEEEEEEecCCcEECCccccCCCCCcHHHHHHHHHHHHhCccceeEEEEe
Confidence            4444789999999999999999988777788999999999999999999999995 688999999999999988 55555


Q ss_pred             ceeeeeeecC-CcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccccCCchHHHHHHHHHHHHHHH
Q psy7748         122 SDLVCIHYSQ-SKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGLPCFLTHSFIGNAKHQL  200 (232)
Q Consensus       122 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~~~~~l~~~~i~~~~~~l  200 (232)
                      ..+.+..... ....+.+||.+.+...++...+.....+.+.+.|+.++.|+|+.++.+...++|+|+.+.|+.+++.++
T Consensus        93 ~~~~~~~~~~~~~~~v~~fy~~~~~~~~l~~~e~~~~~a~~~~~E~~~~~wVPl~~L~d~~~~lP~Fl~~~fi~~a~~ql  172 (196)
T d1u20a1          93 DDYRSSQVREHPQKCVTHFYIKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRDRVGGLPAFLCNNFIGNSKSQL  172 (196)
T ss_dssp             GGEEEEEEECTTSCEEEEEEEEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTTSSTBHHHHTTSCBCTTHHHHH
T ss_pred             eEEEEeccCCCCCEEEEEEEEEEcchHHhhhhhhcccccCcCCccccceeEEeHHHhcccccCcchhHHhhHHHHHHHHH
Confidence            5555444333 346778888888776666555555566677778999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCHHHHHHHHhcCC
Q psy7748         201 LAALLKLKILSPEEINQALNAKP  223 (232)
Q Consensus       201 ~~~l~~~~~~~~~~~~~~~~~~~  223 (232)
                      +.+|++.+++++++|.+|+.++.
T Consensus       173 l~aL~~~~lL~~e~L~~~l~~~~  195 (196)
T d1u20a1         173 LYALRSLKLLREDQIQEVLKASH  195 (196)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHhc
Confidence            99999999999999999987653

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP compounds hydrolase NudE
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=3.4e-25  Score=173.57  Aligned_cols=150  Identities=22%  Similarity=0.181  Sum_probs=102.8

Q ss_pred             CCCCCcccccceeeeeecCCccCcc-ccccccCCcccccccCCccceEEEEEE-ecCCceEEEEeccCcEEEEEEeeC--
Q psy7748           8 DRTWGSSAWNLAATEVYGRPSTNLN-DFIELTQSDLKDDKYKSGYHASHCMIF-AYNDDKIFATYTARANVLMQMRFD--   83 (232)
Q Consensus         8 ~~~w~~~~~~~~~~~vy~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~vi~-~~~~~~v~~~~~~~~~vLl~~R~~--   83 (232)
                      ..+|..    ++++++|+++||+++ +.+++|+|....+.........+++++ ..++.+         .++.|+|++  
T Consensus         6 ~~k~~i----l~~~~v~~~~~f~v~~~~v~~p~G~~~~~~~~~~~~~~~v~vi~~~~~~v---------lLvrq~R~~~~   72 (186)
T d1vhza_           6 LQKPTI----LNVETVARSRLFTVESVDLEFSNGVRRVYERMRPTNREAVMIVPIVDDHL---------ILIREYAVGTE   72 (186)
T ss_dssp             CCCCEE----EEEEEEEECSSCEEEEEEEECTTSCEEEEEEECCCCCCEEEEEEEETTEE---------EEEEEEETTTT
T ss_pred             CcCCEE----eeeEEEEeCCEEEEEEEEEEcCCCCEEEEEEEEeCCCcEEEEEEccCCEE---------EEEEeeecCCC
Confidence            345555    999999999999999 999999998766666443332222222 223222         123455655  


Q ss_pred             -CeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcccccccccccccC
Q psy7748          84 -GYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHD  161 (232)
Q Consensus        84 -g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (232)
                       ..|+||||++|+||+|++||+||++||||+.+. +..+...+..+..  ......+|++..+.......         +
T Consensus        73 ~~~~elP~G~ie~gE~p~~aA~REl~EEtG~~~~~~~~l~~~~~~~g~--~~~~~~~~~a~~~~~~~~~~---------d  141 (186)
T d1vhza_          73 SYELGFSKGLIDPGESVYEAANRELKEEVGFGANDLTFLKKLSMAPSY--FSSKMNIVVAQDLYPESLEG---------D  141 (186)
T ss_dssp             EEEEECEEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEECCTTT--CCCEEEEEEEEEEEECCCCC---------C
T ss_pred             ceEeecccccCCCCcCHHHHHHHHHHHHhccccccceecceeeccccc--cceEEEEEEEEecccccCCC---------C
Confidence             379999999999999999999999999999987 6555555444332  22344444444444332222         2


Q ss_pred             CCccceeeEeeeCcccccccC
Q psy7748         162 YGVEVLGTVRVPLYTMGDGFR  182 (232)
Q Consensus       162 ~~~E~~~~~wvpl~el~~~i~  182 (232)
                      + .|.+++.|+|++++.+++.
T Consensus       142 e-~E~~~~~~~~~~e~~~~i~  161 (186)
T d1vhza_         142 E-PEPLPQVRWPLAHMMDLLE  161 (186)
T ss_dssp             C-SSCCCEEEEEGGGGGGGGG
T ss_pred             C-CcEEEEEEEeHHHHHHHHH
Confidence            2 5889999999999999874

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.91  E-value=2e-25  Score=176.81  Aligned_cols=148  Identities=16%  Similarity=0.203  Sum_probs=97.2

Q ss_pred             CCcccccceeeeeecCCccCcc-ccccccCCcccccccCCccceEEEEEEecCCceEEEEeccCcEEEEEEeeC---Cee
Q psy7748          11 WGSSAWNLAATEVYGRPSTNLN-DFIELTQSDLKDDKYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMRFD---GYI   86 (232)
Q Consensus        11 w~~~~~~~~~~~vy~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~---g~w   86 (232)
                      |+.    ++++++|+++|++++ +.+++|+|....+.+..+..++++++++.++.++         ++.|+|++   ..|
T Consensus         1 ~~~----l~s~~v~~~~~~~v~~d~v~~pdG~~~~~~~v~~~~~V~vl~~~~~~~il---------Lvrq~R~~~~~~~w   67 (202)
T d1mqea_           1 FET----ISSETLHTGAIFALRRDQVRMPGGGIVTREVVEHFGAVAIVAMDDNGNIP---------MVYQYRHTYGRRLW   67 (202)
T ss_dssp             CCE----EEEEEEEECSSEEEEEEEEC-----CEEEEEEEECCEEEEEECCTTSEEE---------EEEEEETTTTEEEE
T ss_pred             CeE----ccEEEEEECCEEEEEEEEEECCCCCEEEEEEEEcCCeEEEEEECCCCEEE---------EEEecccccCceEE
Confidence            566    999999999999999 9999999988888777777777777777664332         23345654   379


Q ss_pred             ecceeecC-CCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEE-eecCcccccccccccccCCC
Q psy7748          87 GFPGGLVD-AGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQ-VEKTDVLEIEKGALTSHDYG  163 (232)
Q Consensus        87 ~lPgG~ve-~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  163 (232)
                      +||||++| +||++++||+||++||||+.+. +..+...+...+..   ....++|.+. +.....       . ..+++
T Consensus        68 elPaG~ie~~gE~~~~aA~REl~EETG~~~~~~~~l~~~~~~~g~~---~~~~~~fla~~~~~~~~-------~-~~~~e  136 (202)
T d1mqea_          68 ELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFS---DESVRVYLATGLREVGR-------P-EAHHE  136 (202)
T ss_dssp             ECCEEECCSTTCCHHHHHHHHHHHHHCEEEEEEEEEEEECSCTTTB---CCCEEEEEEEEEEECCC--------------
T ss_pred             eccccccccCCCCHHHHHHHHHhhccccccccceEeeeeeccCccC---CcEEEEEEEEeccccCC-------C-CCCCc
Confidence            99999999 7999999999999999999987 65555544443332   2233444433 221110       0 11122


Q ss_pred             ccceeeEeeeCcccccccC
Q psy7748         164 VEVLGTVRVPLYTMGDGFR  182 (232)
Q Consensus       164 ~E~~~~~wvpl~el~~~i~  182 (232)
                      .|.+++.|+|++++.+++.
T Consensus       137 ee~i~v~w~~~~e~~~~i~  155 (202)
T d1mqea_         137 EADMTMGWYPIAEAARRVL  155 (202)
T ss_dssp             ----CEEEEEHHHHHHHHT
T ss_pred             cceEEEEEEEHHHHHHHHH
Confidence            4678999999999999863

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=5.4e-22  Score=157.56  Aligned_cols=150  Identities=19%  Similarity=0.073  Sum_probs=101.5

Q ss_pred             cccceeeeeecCCccCcc---ccccccCCccc---ccccCCccceEEEEEEecCCceEEEEeccCcEEEEEEeeC-----
Q psy7748          15 AWNLAATEVYGRPSTNLN---DFIELTQSDLK---DDKYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMRFD-----   83 (232)
Q Consensus        15 ~~~~~~~~vy~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~-----   83 (232)
                      ..+++++++|+| ||+++   ..+++++|...   .........++++++++++.+.+        .++.|+|++     
T Consensus        16 v~il~~~~vy~G-~~~v~~~~~~~~~~dG~~s~~~~rev~~~~~~v~vl~~~~~~~~v--------lLvrQ~R~~~~~~~   86 (209)
T d1g0sa_          16 VEIIARETLYRG-FFSLDLYRFRHRLFNGQMSHEVRREIFERGHAAVLLPFDPVRDEV--------VLIEQIRIAAYDTS   86 (209)
T ss_dssp             EEEEEEEEEEES-SSEEEEEEEEEBCTTSCBCCCEEEEEEECCCEEEEEEEETTTTEE--------EEEEEECGGGGGGS
T ss_pred             eEEEEEEEEEcC-eEEEEEEEEEEECCCCCcccEEEEEEEecCCEEEEEEEEecCCeE--------EEEEEEeccccccC
Confidence            344899999999 87776   56677888542   22334455677777777654432        245677743     


Q ss_pred             ---CeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcccccccccccc
Q psy7748          84 ---GYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTS  159 (232)
Q Consensus        84 ---g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (232)
                         ..|++|||.+|+||+|++||+|||+||||+.+. +..+...+.+++.   .....++|.+.+........    ...
T Consensus        87 ~~~~~lElPAG~id~gE~p~~aA~REL~EEtG~~~~~l~~l~~~~~spg~---~~e~~~~f~a~~~~~~~~~~----~~~  159 (209)
T d1g0sa_          87 ETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVLSFLASPGG---TSERSSIMVGEVDATTASGI----HGL  159 (209)
T ss_dssp             SCSEEEECEEEECCTTCCHHHHHHHHHHHHHCCCCCCEEEEEEEESCTTT---BCCEEEEEEEECCGGGCC---------
T ss_pred             CCceEEeeceeecCCCcCHHHHHHHHHHhhhcccccceeeccccccCCcc---cCCceEEEEEEEecccccCC----CCC
Confidence               268999999999999999999999999999998 6655555544433   34556667776543322111    111


Q ss_pred             cCCCccceeeEeeeCccccccc
Q psy7748         160 HDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       160 ~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      .++ .|.+++.|+|++++.+++
T Consensus       160 ~de-~E~iev~~v~~~e~~~~i  180 (209)
T d1g0sa_         160 ADE-NEDIRVHVVSREQAYQWV  180 (209)
T ss_dssp             ----CCSCEEEEEEHHHHHHHH
T ss_pred             CCC-CceeEEEEEeHHHHHHHH
Confidence            233 588999999999999886

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: AP6A hydrolase Ndx1
species: Thermus thermophilus [TaxId: 274]

Probab=99.85  E-value=4e-21  Score=140.92  Aligned_cols=106  Identities=18%  Similarity=0.133  Sum_probs=77.1

Q ss_pred             cceEEEEEEecCCceEEEEeccCcEEEEEEeeCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeee
Q psy7748          51 YHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHY  129 (232)
Q Consensus        51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~  129 (232)
                      +.+|++++++.+           +.+|+++|..|.|.||||+++.|||+.+||+||++||||+++. ...+.....  ..
T Consensus         2 ~v~agavv~~~~-----------~~vLl~~~~~g~w~~PgG~ve~gEt~~~aa~RE~~EEtGi~~~~~~~~~~~~~--~~   68 (126)
T d1vcda1           2 ELGAGGVVFNAK-----------REVLLLRDRMGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRY--VN   68 (126)
T ss_dssp             EEEEEEEEECTT-----------SCEEEEECTTSCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEE--EC
T ss_pred             EEEEEEEEEECC-----------CEEEEEEcCCCCEECCccccCCCCCHHHHHHHHHHHHcCCeeEEEEEEeeeee--cc
Confidence            467889998876           3567788888999999999999999999999999999999987 433322211  11


Q ss_pred             cCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         130 SQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      ....+...++|.+..... +..           +.|..++.|+|++++.+++
T Consensus        69 ~~~~~~~~~~~~~~~~~~-~~~-----------~~e~~~~~W~~~~e~~~~~  108 (126)
T d1vcda1          69 PKGVEREVHWFLMRGEGA-PRL-----------EEGMTGAGWFSPEEARALL  108 (126)
T ss_dssp             TTSCEEEEEEEEEEEESC-CCC-----------CTTCCEEEEECHHHHHHHB
T ss_pred             CCCeEEEEEEEEEEEcCC-CCC-----------CccceEEEEEEHHHHhhcc
Confidence            223355566777765432 111           1367789999999998875

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein BT0354, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.84  E-value=2e-20  Score=140.83  Aligned_cols=133  Identities=17%  Similarity=0.201  Sum_probs=90.1

Q ss_pred             CCccceEEEEEEecCCceEEEEeccCcEEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeec
Q psy7748          48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDS  122 (232)
Q Consensus        48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~  122 (232)
                      +....++.+||+..++        .+..||+.+|.    +|.|.||||++++|||+++||+||++||||+++. ...+..
T Consensus         7 p~~~v~Vd~Vi~~~~~--------~~~~vLLv~R~~~p~~g~W~lPGG~ie~~Es~~~aa~REl~EEtGl~~~~~~~~~~   78 (147)
T d2fb1a2           7 PTFYLGIDCIIFGFNE--------GEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAELTGLENVYMEQVGA   78 (147)
T ss_dssp             CCEEEEEEEEEEEEET--------TEEEEEEEECSSSSSTTCEECEEEECCTTSCHHHHHHHHHHHHHCCCSCEEEEEEE
T ss_pred             CCcceEEEEEEEEEeC--------CcCEEEEEEccCCCCCCcEeCcEeeecCCCCHHHHHHHHHHHHhCCcccceeeeeE
Confidence            4556667777765332        23467888873    4899999999999999999999999999999987 544432


Q ss_pred             eeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccccCCchHHHHHHHHHHHHHHHHH
Q psy7748         123 DLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGLPCFLTHSFIGNAKHQLLA  202 (232)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~~~~~l~~~~i~~~~~~l~~  202 (232)
                      +. ........+.+.++|.+.+.........          .|..++.|+++++++++...     ...++..+..+|..
T Consensus        79 ~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~----------~e~~~~~W~~~~~lp~lafD-----H~~ii~~a~~~lr~  142 (147)
T d2fb1a2          79 FG-AIDRDPGERVVSIAYYALININEYDREL----------VQKHNAYWVNINELPALIFD-----HPEMVDKAREMMKQ  142 (147)
T ss_dssp             EC-CTTSSSSSCEEEEEEEEECCTTSSCHHH----------HHHTTEEEEETTSCCCBSTT-----HHHHHHHHHHHHHH
T ss_pred             ec-CCcccCCCceEEEEEEEEecCCcccCCC----------cchhheEEecHHhchhcccC-----HHHHHHHHHHHHHH
Confidence            21 1222223456667777766544332222          36678999999999987521     34566666666665


Q ss_pred             HH
Q psy7748         203 AL  204 (232)
Q Consensus       203 ~l  204 (232)
                      .+
T Consensus       143 k~  144 (147)
T d2fb1a2         143 KA  144 (147)
T ss_dssp             HH
T ss_pred             Hh
Confidence            44

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: NADH pyrophosphatase
domain: NADH pyrophosphatase
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=4.6e-20  Score=136.14  Aligned_cols=92  Identities=17%  Similarity=0.187  Sum_probs=68.7

Q ss_pred             EEEEEEee---CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCccc
Q psy7748          75 NVLMQMRF---DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVL  150 (232)
Q Consensus        75 ~vLl~~R~---~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (232)
                      ++|+++|.   +|.|+||||++|+|||+++||.||++||||+.+. .......   ..  ...+...++|.+....++..
T Consensus        15 ~vLL~~~~~~~~g~w~lpGG~ve~GEt~~~aa~REl~EEtG~~~~~~~~~~~~---~~--~~~~~~~~~f~~~~~~~~~~   89 (131)
T d1vk6a2          15 SILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQ---PW--PFPQSLMTAFMAEYDSGDIV   89 (131)
T ss_dssp             EEEEEEETTTCSSCCBCEEEECCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEE---EE--ETTEEEEEEEEEEEEECCCC
T ss_pred             EEEEEEeccCCCCCEecccCCCcCCCcHHHHHHHHHHHHhCCcccceeEEEEe---cc--CcCceEEEEEEEEEcCCccc
Confidence            45666662   3789999999999999999999999999999987 4333221   11  13356777788877665544


Q ss_pred             ccccccccccCCCccceeeEeeeCccccccc
Q psy7748         151 EIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       151 ~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      ...          .|..++.|+++++++.+.
T Consensus        90 ~~~----------~E~~~~~W~~~~el~~l~  110 (131)
T d1vk6a2          90 IDP----------KELLEANWYRYDDLPLLP  110 (131)
T ss_dssp             CCT----------TTEEEEEEEETTSCCSCC
T ss_pred             CCC----------ccEEEEEEEcHHHHhhCC
Confidence            332          589999999999998864

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase
species: Thermus thermophilus [TaxId: 274]

Probab=99.84  E-value=4.9e-22  Score=151.45  Aligned_cols=129  Identities=22%  Similarity=0.217  Sum_probs=79.3

Q ss_pred             eeeecCCccCccccccccCCcccccccCCccceEEEEEEecCCceEEEEeccCcEEEE--EEeeC---CeeecceeecCC
Q psy7748          21 TEVYGRPSTNLNDFIELTQSDLKDDKYKSGYHASHCMIFAYNDDKIFATYTARANVLM--QMRFD---GYIGFPGGLVDA   95 (232)
Q Consensus        21 ~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl--~~R~~---g~w~lPgG~ve~   95 (232)
                      +++|+++|+++..        ...+++...+.++++++++.+            ++||  |+|++   +.|+||||++|+
T Consensus         2 ~~~y~g~~~~~~~--------~~~~~~v~~~~aV~vl~~~~~------------~vlLv~q~R~~~~~~~~elP~G~ve~   61 (158)
T d1v8ya_           2 TYLYRGRILNLAL--------EGRYEIVEHKPAVAVIALREG------------RMLFVRQMRPAVGLAPLEIPAGLIEP   61 (158)
T ss_dssp             EEEEECSSEEEEE--------ETTEEEEEECCEEEEEEEETT------------EEEEEECCBTTTTBCCBBCSEEECCT
T ss_pred             eEEEeccEEeeEE--------eeeEEEEecCCEEEEEEEECC------------EEEEEEeeecCCCCceEecchhhccc
Confidence            5899999997651        123444555667777776532            3344  44543   589999999999


Q ss_pred             CCCHHHHHhHHHHHhhCCCCcceeeeceeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCc
Q psy7748          96 GESPLEALNRELNEEINLNPKYKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLY  175 (232)
Q Consensus        96 gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~  175 (232)
                      ||++++||+||++||||+.+....+...+...+.  ....+.+|++..+........          ++|.+++.|+|++
T Consensus        62 gE~~~~aA~REl~EEtG~~~~~~~l~~~~~~~g~--~~~~~~~f~a~~~~~~~~~~d----------~~E~~ev~w~~~~  129 (158)
T d1v8ya_          62 GEDPLEAARRELAEQTGLSGDLTYLFSYFVSPGF--TDEKTHVFLAENLKEVEAHPD----------EDEAIEVVWMRPE  129 (158)
T ss_dssp             TCCHHHHHHHHHHHHHSEEEEEEEEEEEESCTTT--BCCEEEEEEEEEEEECC------------------CEEEEECHH
T ss_pred             cCCHHHHHHHHHHhhcCCcceeeeecceecCCCc--ceEEEEEEEEccccccccCCC----------CCeeEEEEEEEHH
Confidence            9999999999999999998763222222322222  123333333333332222221          2588899999999


Q ss_pred             cccccc
Q psy7748         176 TMGDGF  181 (232)
Q Consensus       176 el~~~i  181 (232)
                      ++.+++
T Consensus       130 e~~~~i  135 (158)
T d1v8ya_         130 EALERH  135 (158)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999875

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: ADP-ribose pyrophosphatase homologue YffH
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=2.2e-20  Score=146.06  Aligned_cols=168  Identities=12%  Similarity=0.126  Sum_probs=104.6

Q ss_pred             ceeeeeecCCccCcc---ccccccCCcccc--cccCCccceEEEEEEecCCceEEEEeccCcEEEEEEeeC---------
Q psy7748          18 LAATEVYGRPSTNLN---DFIELTQSDLKD--DKYKSGYHASHCMIFAYNDDKIFATYTARANVLMQMRFD---------   83 (232)
Q Consensus        18 ~~~~~vy~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~---------   83 (232)
                      ++.+.+|++ ||+++   ..+..++|....  +.......++++++++++.+.+        .++.|+|++         
T Consensus         6 ~~~~~~~~g-~~~~~~~~~~~~~~dG~~~~~~rev~~~~~aV~Vl~~~~~~~~v--------llvrQ~R~~v~~~~~~~~   76 (189)
T d1viua_           6 IKDKILSDN-YFTLHNITYDLTRKDGEVIRHKREVYDRGNGATILLYNTKKKTV--------VLIRQFRVATWVNGNESG   76 (189)
T ss_dssp             EEEEEEECS-SSEEEEEEEEECCSSSCCEEEEEEEEECCCEEEEEEEETTTTEE--------EEEEEECHHHHTTTCSSC
T ss_pred             EEEEEEEcC-cEEEEEEEEEEECCCCCEEEEEEEEEecCCEEEEEEEEcCCCEE--------EEEEeeccceeeccCCCc
Confidence            677788877 99887   345667875422  2223345577777776554432        235577732         


Q ss_pred             CeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCC
Q psy7748          84 GYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDY  162 (232)
Q Consensus        84 g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (232)
                      ..|++|||.++ ||++++||+|||+||||+.+. +..++..+..++..   ...+++|.+..........     ...++
T Consensus        77 ~~~e~paG~~d-~e~p~~aA~REL~EEtG~~~~~~~~lg~~~~spG~~---~e~~~~f~a~~~~~~~~~~-----~~~~e  147 (189)
T d1viua_          77 QLIESCAGLLD-NDEPEVCIRKEAIEETGYEVGEVRKLFELYMSPGGV---TELIHFFIAEYSDNQRANA-----GGGVE  147 (189)
T ss_dssp             EEEECEEEECT-TSCHHHHHHHHHHHHHSCCCCCCEEEEEEESCTTTB---CCEEEEEEEECCTTCC-------------
T ss_pred             ceecCcEEecC-CCCHHHHHHHHHHHhhCCcceEEEEcceeecCcccc---CceEEEEEEEECCcccccC-----CCCCC
Confidence            26789999998 677899999999999999988 66665555544432   3455666666543322111     11223


Q ss_pred             CccceeeEeeeCcccccccCCchHHHHHHHHHHHHHHH-HHHHHhCCCCC
Q psy7748         163 GVEVLGTVRVPLYTMGDGFRGLPCFLTHSFIGNAKHQL-LAALLKLKILS  211 (232)
Q Consensus       163 ~~E~~~~~wvpl~el~~~i~~~~~~l~~~~i~~~~~~l-~~~l~~~~~~~  211 (232)
                       +|.+++.|+|++++.+++       .++-+.+++..+ +..|+..++++
T Consensus       148 -~E~i~v~~~~~~e~~~~i-------~~g~i~da~ti~al~~l~~~~l~~  189 (189)
T d1viua_         148 -DEDIEVLELPFSQALEMI-------KTGEIRDGKTVLLLNYLQTSHLMD  189 (189)
T ss_dssp             --CCEEEEEEEHHHHHHHH-------HHTSCCBHHHHHHHHHHHTTTSCC
T ss_pred             -CccEEEEEEEHHHHHHHH-------HcCCCCcHHHHHHHHHHHHhcccC
Confidence             488999999999999986       444444444432 33566666653

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.81  E-value=2.9e-19  Score=132.14  Aligned_cols=112  Identities=17%  Similarity=0.153  Sum_probs=74.1

Q ss_pred             ceEEEEEEecCCceEEEEeccCcEEEEEEe--eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeecee-eee
Q psy7748          52 HASHCMIFAYNDDKIFATYTARANVLMQMR--FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDL-VCI  127 (232)
Q Consensus        52 ~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R--~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~-~~~  127 (232)
                      +++++++++...+        +.++|+.+|  .+|.|.+|||+++.|||+.+||+||++||||+++. ........ ...
T Consensus         3 raag~vv~~~~~~--------~~~~Ll~~r~~~~g~W~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~   74 (137)
T d1ktga_           3 KAAGLVIYRKLAG--------KIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLF   74 (137)
T ss_dssp             EEEEEEEEEEETT--------EEEEEEEEESSTTCCEESSEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEEEEEEEE
T ss_pred             EEEEEEEEEEcCC--------CEEEEEEEEcCCCCcEeCcccccccCCCHHHHHHHHHHHHhCCcceeeeeeeeeeeeee
Confidence            5677777774432        235666666  35899999999999999999999999999999987 43332222 222


Q ss_pred             eecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         128 HYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      ...........+|.+..........          +.|..++.|++++++++.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~E~~~~~W~~~~e~~~~~  118 (137)
T d1ktga_          75 YEAKGKPKSVKYWLAKLNNPDDVQL----------SHEHQNWKWCELEDAIKIA  118 (137)
T ss_dssp             EEETTEEEEEEEEEEEECSCCCCCC----------CTTEEEEEEECHHHHHHHH
T ss_pred             cCCCcceEEEEEEEEEecCCCCcCC----------CcceEEEEEEEHHHHHHhc
Confidence            2222334444555554433221111          1478899999999998764

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Isopentenyl diphosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=5.6e-20  Score=139.23  Aligned_cols=114  Identities=17%  Similarity=0.140  Sum_probs=78.1

Q ss_pred             cceEEEEEEecCCceEEEEeccCcEEEEEEe------eCCeeec-ceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeec
Q psy7748          51 YHASHCMIFAYNDDKIFATYTARANVLMQMR------FDGYIGF-PGGLVDAGESPLEALNRELNEEINLNPK-YKVKDS  122 (232)
Q Consensus        51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R------~~g~w~l-PgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~  122 (232)
                      ++|++++|++.+           +.+|+++|      ++|.|.+ |||++++|||+.+||+||++||||+++. ...+..
T Consensus         2 Hra~~v~i~n~~-----------g~vLl~kRs~~k~~~pg~w~~~pgG~ve~gEt~~eaa~RE~~EE~Gi~~~~~~~~~~   70 (153)
T d1hzta_           2 HLAFSSWLFNAK-----------GQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYP   70 (153)
T ss_dssp             EECEEEEEECTT-----------CCEEEEEECTTCSSSTTCEEESEEECCCTTCCHHHHHHHHHHHHHCCCBSCCEEEET
T ss_pred             ceEEEEEEEECC-----------CEEEEEEeCCCCCCCCCceecccCceeecCCcHHHHHHHHHHHHcCceeecccceec
Confidence            458888898877           35678888      4688876 9999999999999999999999999987 433322


Q ss_pred             eeeeeeecC---CcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccccCCchH
Q psy7748         123 DLVCIHYSQ---SKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGLPC  186 (232)
Q Consensus       123 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~~~~  186 (232)
                      .+.+....+   ....+.++|.+... +.+.+..          +|+.++.|++++++.+++...|.
T Consensus        71 ~~~y~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------~Ev~~~~W~~~~el~~~i~~~p~  126 (153)
T d1hzta_          71 DFRYRATDPSGIVENEVCPVFAARTT-SALQIND----------DEVMDYQWCDLADVLHGIDATPW  126 (153)
T ss_dssp             TCEEEEECTTSCEEEEECCEEEEEBC-SCCCCCT----------TTEEEEEEECHHHHHHHHHHCGG
T ss_pred             cccccccccccccceeEEEEEEEeeC-CCccCCh----------hheeEEEEeeHHHHHHHHHcCCc
Confidence            222222111   12334444554432 3333222          48999999999999988655444

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diphosphoinositol polyphosphate phosphohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.3e-19  Score=132.74  Aligned_cols=114  Identities=13%  Similarity=0.073  Sum_probs=74.4

Q ss_pred             CCccceEEEEEEecCCceEEEEeccCcEEEEEE-eeCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceee
Q psy7748          48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQM-RFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLV  125 (232)
Q Consensus        48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~-R~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~  125 (232)
                      ..++..+++++++.++...        .+|+++ +.+|.|.||||++++|||+.+||+||++||||+.+. ..+....  
T Consensus         8 ~~~r~~a~~vv~~~~~~~~--------~lL~~~~~~~~~W~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~--   77 (135)
T d2fvva1           8 DGYKKRAACLCFRSESEEE--------VLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVGIF--   77 (135)
T ss_dssp             TSCEEEEEEEEESSTTCCE--------EEEEECSSCTTSEECSEEECCTTCCHHHHHHHHHHHHHCEEEEEEEEEEEE--
T ss_pred             CCCceEEEEEEEEecCCCE--------EEEEEEeCCCCcEECCccccCCCCCHHHHHHHHHHHHhCCcceeeEEEEEE--
Confidence            4567788888887654321        233333 366899999999999999999999999999999987 4333222  


Q ss_pred             eeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccccC
Q psy7748         126 CIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFR  182 (232)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~  182 (232)
                       ..........++++.+...........          .|..++.|++++++.+++.
T Consensus        78 -~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~e~~~~~W~~~~e~~~~l~  123 (135)
T d2fvva1          78 -ENQERKHRTYVYVLIVTEVLEDWEDSV----------NIGRKREWFKIEDAIKVLQ  123 (135)
T ss_dssp             -EETTTTEEEEEEEEEEEEECSSCHHHH----------HHCCCEEEEEHHHHHHHHT
T ss_pred             -eeccCCccEEEEEEEEEeecCCCCCCC----------CceeEEEEEEHHHHHHHHh
Confidence             222223333333333333222222222          4677899999999998864

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]

Probab=99.79  E-value=5.6e-19  Score=135.21  Aligned_cols=121  Identities=17%  Similarity=0.062  Sum_probs=77.8

Q ss_pred             CccceEEEEEEecCCceEEEEeccCcEEEEEEe--eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeec-ee
Q psy7748          49 SGYHASHCMIFAYNDDKIFATYTARANVLMQMR--FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDS-DL  124 (232)
Q Consensus        49 ~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R--~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~-~~  124 (232)
                      .+|++|+++|++.+           ++||+++|  .+|.|.+|||+||.|||+++||.||++||||+.+. ...... .+
T Consensus        12 ~yR~~Vg~vI~n~~-----------~~vLL~kR~~~~g~W~~PgG~ve~gEt~~~Aa~REl~EEtGl~~~~~~~~~~~~~   80 (165)
T d1jkna_          12 GYRRNVGICLMNND-----------KKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWL   80 (165)
T ss_dssp             SEEEEEEEEEECTT-----------SCEEEEEESSSTTCEECCEECCCTTCCHHHHHHHHHHHHTCCCSEEEEEECSSCE
T ss_pred             CccccEEEEEEeCC-----------CEEEEEEEcCCCCcccCccceEcCCCChhHHHHHHHHHhhccccccccccccccc
Confidence            46888999998876           35677777  45899999999999999999999999999999986 321111 11


Q ss_pred             eeee------------ecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccccCC
Q psy7748         125 VCIH------------YSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRG  183 (232)
Q Consensus       125 ~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~  183 (232)
                      ....            .........++|.+.+...+....-   ........|..++.|++++++++.+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~E~~~~~W~~~~el~~~i~~  148 (165)
T d1jkna_          81 TYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINL---LGDGSEKPEFGEWSWVTPEQLIDLTVE  148 (165)
T ss_dssp             EEECCHHHHHHHHHHTCCCCSEEEECCEEEEECSCTTTCCS---SCSSSSCCCEEEEEEECTTHHHHHSCG
T ss_pred             cccccceeeceeeeeecCCccceeeEEEEEEEeCCCceeec---CCCCCCCCeeEEeEECCHHHHHHhcch
Confidence            1100            0112234445555555433221110   001111248889999999999987643

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein DR1025
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.79  E-value=2.2e-19  Score=136.19  Aligned_cols=114  Identities=19%  Similarity=0.255  Sum_probs=77.5

Q ss_pred             cCCccceEEEEEEecCCceEEEEeccCcEEEEEEe--------eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-c
Q psy7748          47 YKSGYHASHCMIFAYNDDKIFATYTARANVLMQMR--------FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-Y  117 (232)
Q Consensus        47 ~~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R--------~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~  117 (232)
                      .+...+++++++++.++           ++|+.+|        .+|.|+||||++++||++.+||+||++||||+.+. .
T Consensus         8 ~p~~~~a~~~vi~~~~g-----------~iLl~~r~~~~~~~~~~g~W~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~   76 (158)
T d1sjya_           8 VPVELRAAGVVLLNERG-----------DILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPV   76 (158)
T ss_dssp             CCCCEEEEEEEEBCTTC-----------CEEEEEESCC----CCCCCEECSEEECCTTSCHHHHHHHHHHHHHSCCEEEE
T ss_pred             CCCceeEEEEEEEeCCC-----------EEEEEEEecCCCCCCCCCcEECCceecCCCCCHHHHHHHHHHHHhCccceee
Confidence            34455678888887663           4556555        13789999999999999999999999999999987 5


Q ss_pred             eeeeceeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         118 KVKDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      .++... .... ........++|.+....+....       .. .++|+.++.|++++++.+++
T Consensus        77 ~~i~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~E~~~~~w~~~~el~~l~  130 (158)
T d1sjya_          77 KFLGAY-LGRF-PDGVLILRHVWLAEPEPGQTLA-------PA-FTDEIAEASFVSREDFAQLY  130 (158)
T ss_dssp             EEEEEE-EEEC-TTSCEEEEEEEEEEECSSCCCC-------CC-CCSSEEEEEEECHHHHHHHH
T ss_pred             EEEEEE-EEEC-CCCCEEEEEEEEEEEcCCcccC-------CC-CCcceEEEEEEEHHHHhhhh
Confidence            443322 2222 2234555666666555432211       11 12589999999999998764

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: mRNA decapping enzyme-like
domain: mRNA decapping enzyme Dcp2p catalytic domain
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.79  E-value=9.1e-20  Score=137.63  Aligned_cols=111  Identities=13%  Similarity=0.118  Sum_probs=68.2

Q ss_pred             ceEEEEEEecCCceEEEEeccCcEEEEEEe--eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeee
Q psy7748          52 HASHCMIFAYNDDKIFATYTARANVLMQMR--FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIH  128 (232)
Q Consensus        52 ~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R--~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~  128 (232)
                      +.++|+|++.+..          ++|+.+|  .++.|.||||+++.|||+.+||+||++||||+++. ....... ....
T Consensus         3 ~v~Gaii~~~~~~----------kvLLvk~~~~~~~W~lPgG~ie~gEs~~~aa~RE~~EEtGi~~~~~~~~~~~-~~~~   71 (151)
T d2a6ta2           3 PVRGAIMLDMSMQ----------QCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINPNEF-IDMT   71 (151)
T ss_dssp             CEEEEEEBCSSSS----------EEEEEEESSTTCCCBCSEEECCTTCCHHHHHHHHHHHHHCCCCTTTCCTTCE-EEEE
T ss_pred             cEEEEEEEECCCC----------EEEEEEEeCCCCCEECCcccccCCCCHHHHHHHHHHHHhCCCceeeeecceE-Eeec
Confidence            3568888887643          4555555  34789999999999999999999999999999987 3222222 2222


Q ss_pred             ecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccccCC
Q psy7748         129 YSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRG  183 (232)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~  183 (232)
                      .. . ....+++...+.....       .... ...|+.++.|+++++++++...
T Consensus        72 ~~-~-~~~~~~~~~~~~~~~~-------~~~~-~~~Ei~~~~W~~~~el~~~~~~  116 (151)
T d2a6ta2          72 IR-G-QNVRLYIIPGISLDTR-------FESR-TRKEISKIEWHNLMDLPTFKKN  116 (151)
T ss_dssp             ET-T-EEEEEEEECCCCTTCC-------CC-------EEEEEEEEGGGSTTCC--
T ss_pred             cc-C-ceEEEEEEEEeccCCc-------cccc-CCCccceEEEEEHHHhhhhhhc
Confidence            22 2 2233333332222111       1111 1248889999999999987543

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein NE0184
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.78  E-value=8.9e-19  Score=131.00  Aligned_cols=98  Identities=15%  Similarity=0.094  Sum_probs=67.6

Q ss_pred             cEEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCc
Q psy7748          74 ANVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTD  148 (232)
Q Consensus        74 ~~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (232)
                      +++|+.+|+    +|.|.||||+++.|||+.+||+||++||||+.+. ....... .........+...++|.+......
T Consensus        14 ~k~Llv~r~~~~~~~~w~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   92 (146)
T d2b0va1          14 DKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIY-HWTCASNGTTYLRFTFSGQVVSFD   92 (146)
T ss_dssp             TEEEEEEECSSSSCCEEECSEEECCTTSCHHHHHHHHHHHHHSEEEEEEEEEEEE-EEEETTTTEEEEEEEEEEEEEEEC
T ss_pred             CEEEEEEEecCCCCCEEECCeeeECCCCCHHHHHHHHHHHhheeecccceEEEEE-EEecCCCCeEEEEEEEEEEeecCC
Confidence            356777763    3689999999999999999999999999999987 4433332 222223344555666666554332


Q ss_pred             ccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         149 VLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       149 ~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      ....         .+.|..++.|++++++.+..
T Consensus        93 ~~~~---------~~~E~~~~~W~~~~el~~~~  116 (146)
T d2b0va1          93 PDRK---------LDTGIVRAAWFSIDEIRAKQ  116 (146)
T ss_dssp             TTSC---------CCTTEEEEEEEEHHHHHHTG
T ss_pred             CCCC---------CCcceeEEEEeeHHHHhhCc
Confidence            2111         12588999999999997753

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein EF1141
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.78  E-value=6.1e-19  Score=132.14  Aligned_cols=110  Identities=14%  Similarity=0.055  Sum_probs=76.2

Q ss_pred             cceEEEEEEecCCceEEEEeccCcEEEEEEeeCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeee
Q psy7748          51 YHASHCMIFAYNDDKIFATYTARANVLMQMRFDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHY  129 (232)
Q Consensus        51 ~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~  129 (232)
                      +.+|+++|++.++.          .+|++++..|.|.||||++++|||+.+||+||++||||+++. ...+.........
T Consensus        17 r~~~~~vi~~~~~~----------~lll~~~~~~~w~lPgG~ie~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~   86 (147)
T d2azwa1          17 RYAAYIIVSKPENN----------TMVLVQAPNGAYFLPGGEIEGTETKEEAIHREVLEELGISVEIGCYLGEADEYFYS   86 (147)
T ss_dssp             CCEEEEECEEGGGT----------EEEEEECTTSCEECSEEECCTTCCHHHHHHHHHHHHHSEEEEEEEEEEEEEEEEEE
T ss_pred             CCeEEEEEEECCCC----------EEEEEEcCCCeEECcEeEeCCCCCHHHHHHHHHHhhhceeeeeeeEEEEEEEEeee
Confidence            56788888887644          456666777899999999999999999999999999999987 4444333332222


Q ss_pred             cCCc---EEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         130 SQSK---KIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       130 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      ....   +...++|.+..........           .|..++.|++++++.+.+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~e~~~~~W~~~~e~~~~l  130 (147)
T d2azwa1          87 NHRQTAYYNPGYFYVANTWRQLSEPL-----------ERTNTLHWVAPEEAVRLL  130 (147)
T ss_dssp             TTTTEEEEEEEEEEEEEEEEECSSCC------------CCSEEEEECHHHHHHHB
T ss_pred             ccCCceEEEEEEEEEEEeccccCCCC-----------ccceEEEEEEHHHHHHHc
Confidence            2221   3445556665443332221           367789999999988765

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1e-18  Score=131.84  Aligned_cols=119  Identities=18%  Similarity=0.097  Sum_probs=80.1

Q ss_pred             ceEEEEEEecCCceEEEEeccCcEEEEEEeeC--CeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeece-eeee
Q psy7748          52 HASHCMIFAYNDDKIFATYTARANVLMQMRFD--GYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSD-LVCI  127 (232)
Q Consensus        52 ~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~--g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~-~~~~  127 (232)
                      ++|+++++...  ++....+.+.++|+.+|..  +.|.+|||++++|||+.+||+||++||||+.+. ....... +...
T Consensus         9 ~~~g~i~f~~~--~~~~~~~~~~~~LL~~~~~~~~~W~lPgG~ie~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~   86 (153)
T d1xsba_           9 RACGLIIFRRC--LIPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTIIEGFKRELN   86 (153)
T ss_dssp             EEEEEEEEEEC--SSCSSSSTTEEEEEEEESSTTCCEECCEEECCSSSCHHHHHHHHHHHTTSCCTTTEEECSSCCEEEE
T ss_pred             heeEEEEEecc--ccccccCCCCEEEEEEecCCCCcEECCeeecCCCCCHHHHHHHHHHHHhCCccceeeeeccceeeec
Confidence            57899998742  2233445666888887744  579999999999999999999999999999987 4433322 2222


Q ss_pred             eecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         128 HYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      ..........++|.+..........         .+.|..++.|++++++.+++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~E~~~~~W~~~~e~~~~~  131 (153)
T d1xsba_          87 YVARNKPKTVIYWLAEVKDYDVEIR---------LSHEHQAYRWLGLEEACQLA  131 (153)
T ss_dssp             EESSSCEEEEEEEEEEESCTTCCCC---------CCTTEEEEEEECHHHHHHHT
T ss_pred             ccccCceeEEEEEEEEEeecccccC---------CCcceeEEEEEEHHHHHHhc
Confidence            2223334445555554443221111         12488899999999999876

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: BT0354 N-terminal domain-like
domain: Hypothetical protein EF2700, N-terminal domain
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.78  E-value=2e-18  Score=136.31  Aligned_cols=120  Identities=18%  Similarity=0.196  Sum_probs=81.7

Q ss_pred             cEEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeee--eecCCcEEEEEEEEEEeec
Q psy7748          74 ANVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCI--HYSQSKKIILHFYALQVEK  146 (232)
Q Consensus        74 ~~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  146 (232)
                      .+|||.+|.    .|.|.||||+|+.|||+.+||.||++||||+.+. ..+.. ...+.  ......+.+.++|.+.+..
T Consensus        54 l~VLLv~R~~~p~~g~W~lPGG~ve~gEs~~eaa~REl~EEtGl~~~~~~l~~-~~~~~~~~r~~~~~~i~~~~~~~~~~  132 (202)
T d2fmla2          54 LKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQ-LHSFSRPDRDPRGWVVTVSYLAFIGE  132 (202)
T ss_dssp             EEEEEEEECSSSSTTCEECCEEECCTTSCHHHHHHHHHHHHHCCCCCGGGEEE-EEEECCTTSSTTSSEEEEEEEEECCC
T ss_pred             eEEEEEEecCCCCCCcEECCEEeecCCCCHHHHhhhhhHhhcCeeeecceeee-eeecccCCccccceEEEEEEEEEeCC
Confidence            367888883    4899999999999999999999999999999986 32221 12221  2122346677777776654


Q ss_pred             CcccccccccccccCCCccceeeEeeeCcccccccC------------------Cch--HHHHHHHHHHHHHHHHHHHH
Q psy7748         147 TDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFR------------------GLP--CFLTHSFIGNAKHQLLAALL  205 (232)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~------------------~~~--~~l~~~~i~~~~~~l~~~l~  205 (232)
                      .....           ++|..++.|+|+++++....                  ..+  +|..+.++..+..++...+.
T Consensus       133 ~~~~~-----------~~e~~~~~Wf~ld~l~~~~~~~~~~~~~~~~~~~~~~~~~~~LaFDH~~Ii~~Al~Rlr~k~~  200 (202)
T d2fmla2         133 EPLIA-----------GDDAKEVHWFNLERHGQHITLSHEDVEITLDLKTAASLGKDTLAFDHSEIIIKAFNRVVDKME  200 (202)
T ss_dssp             CCCCC-----------CTTEEEEEEEEEEEETTEEEEEETTEEEEEETTTCCBCSSSCCSTTHHHHHHHHHHHHHHHTT
T ss_pred             CCcCC-----------CcceeeEEEEeHHHCcchhcccchhhhhhhhhhhhccccCCCcccCHHHHHHHHHHHHHHhhC
Confidence            43322           24788999999999986321                  001  13455677777788776654

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.6e-18  Score=131.36  Aligned_cols=94  Identities=20%  Similarity=0.199  Sum_probs=63.7

Q ss_pred             cEEEEEEee----CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecCc
Q psy7748          74 ANVLMQMRF----DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKTD  148 (232)
Q Consensus        74 ~~vLl~~R~----~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (232)
                      +++|+++|.    .|+|.+|||++++|||+.+||+||++||||+++. ....... .+...........++|.+....++
T Consensus        16 ~~vLL~~r~~~~~~g~W~lPGG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   94 (156)
T d1irya_          16 QRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVGQI-VFEFVGEPELMDVHVFCTDSIQGT   94 (156)
T ss_dssp             SEEEEEEESSSSSBTCEECBCCBCCTTCCHHHHHHHHHHHHHSCCBSCCCEEEEE-EEEETTCSCEEEEEEECCCCBCSC
T ss_pred             CEEEEEEecCCCCCCEEECcEeEecCCCCHHHHHHHHHHHHHCCcccceEEEEEE-EEEcCCCCEEEEEEEEEEEeecCc
Confidence            366777773    3799999999999999999999999999999987 4433322 222222233444555544433332


Q ss_pred             ccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         149 VLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       149 ~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      +..            .+..+..|+++++++..
T Consensus        95 ~~~------------~ee~~~~W~~~~~l~~~  114 (156)
T d1irya_          95 PVE------------SDEMRPCWFQLDQIPFK  114 (156)
T ss_dssp             CCC------------CSSEEEEEEETTCCCST
T ss_pred             ccC------------CchhheEEeEHHHCCcC
Confidence            221            24467899999999986

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Coenzyme A pyrophosphatase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.77  E-value=8.5e-19  Score=136.80  Aligned_cols=112  Identities=22%  Similarity=0.273  Sum_probs=73.6

Q ss_pred             CCccceEEEEEEecCCceEEEEeccCcEEEEEEe------eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceee
Q psy7748          48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMR------FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVK  120 (232)
Q Consensus        48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R------~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~  120 (232)
                      ++.++|++++++..++         +..||+++|      ++|.|+||||++|.||++.+||+||++||||+... ..++
T Consensus        28 ~~~r~aaVlv~~~~~~---------~~~vll~kR~~~l~~h~G~~~fPGG~~e~~E~~~~aAlRE~~EE~Gl~~~~~~~l   98 (187)
T d1nqza_          28 PHYRRAAVLVALTREA---------DPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAAVTLL   98 (187)
T ss_dssp             --CEEEEEEEEEESSS---------SCBBCEEEEC------CCCEECSEEECCTTCCHHHHHHHHHHHHHCCCGGGCEEE
T ss_pred             CCCCccEEEEEEEECC---------CCEEEEEEcCCCCCCCCCeEeCCccccccCCchhHHHHHHHHHhhccccceeEEe
Confidence            4556676666665442         346788888      46999999999999999999999999999999987 5554


Q ss_pred             eceeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccc
Q psy7748         121 DSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGD  179 (232)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~  179 (232)
                      +.......  .. ...++.|.+.+........        ....|+.++.|+|++++.+
T Consensus        99 g~l~~~~~--~~-~~~V~p~v~~l~~~~~~~~--------~~~~EV~~v~~vpl~~L~~  146 (187)
T d1nqza_          99 GELDDVFT--PV-GFHVTPVLGRIAPEALDTL--------RVTPEVAQIITPTLAELRA  146 (187)
T ss_dssp             EECCCEEE--TT-TEEEEEEEEEECGGGGGGC--------CCCTTEEEEECCBHHHHHH
T ss_pred             ecccceee--cc-ccEEEEEEEEECCcccccc--------ccCCcceEEEeccHHHHhc
Confidence            43322211  11 2344445555543222111        1125888999999988754

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: GDP-mannose mannosyl hydrolase NudD
domain: GDP-mannose mannosyl hydrolase NudD
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=1.5e-18  Score=131.91  Aligned_cols=107  Identities=14%  Similarity=0.095  Sum_probs=71.5

Q ss_pred             eEEEEEEecCCceEEEEeccCcEEEEEEe----eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ce--eeece-e
Q psy7748          53 ASHCMIFAYNDDKIFATYTARANVLMQMR----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YK--VKDSD-L  124 (232)
Q Consensus        53 a~~~vi~~~~~~~v~~~~~~~~~vLl~~R----~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~--~~~~~-~  124 (232)
                      +++++|++.+           +++|+.+|    ++|.|.+|||++++|||+.+||+||++||||+++. ..  ..... +
T Consensus        20 ~v~~vi~~~~-----------~~vLL~kR~~~~~~g~W~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~   88 (160)
T d1ryaa_          20 SLDFIVENSR-----------GEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQH   88 (160)
T ss_dssp             EEEEEEECTT-----------SCEEEEEECSSSSTTSEECCEEECCTTCCHHHHHHHHHHHHHSSCCCGGGSEEEEEEEE
T ss_pred             EEEEEEEeCC-----------CeEEEEEeCCCCCCCcEecccccccCCCcHHHHHHHHHHHHhCceEeeeeeeEEEEEEE
Confidence            5556666654           35677777    34899999999999999999999999999999976 21  11111 1


Q ss_pred             eeeee----cCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         125 VCIHY----SQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       125 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      .+...    ....+.+.++|.+..........          +.|..++.|++++++.++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~E~~e~~W~~~~el~~~  138 (160)
T d1ryaa_          89 FYDDNFSGTDFTTHYVVLGFRFRVSEEELLLP----------DEQHDDYRWLTSDALLAS  138 (160)
T ss_dssp             EESSBTTBSSSCEEEEEEEEEEECCGGGCCCC----------SSSEEEEEEECHHHHHHC
T ss_pred             eccccccCCCcceEEEEEEEEEEecCCCccCC----------CcceEEEEEEEHHHhhcC
Confidence            11111    11234556666666554433222          247889999999999875

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein SP1235 (spr1115)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.77  E-value=2.9e-18  Score=129.81  Aligned_cols=105  Identities=21%  Similarity=0.197  Sum_probs=72.6

Q ss_pred             eEEEEEEecCCceEEEEeccCcEEEEEEeeC-----CeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeee
Q psy7748          53 ASHCMIFAYNDDKIFATYTARANVLMQMRFD-----GYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVC  126 (232)
Q Consensus        53 a~~~vi~~~~~~~v~~~~~~~~~vLl~~R~~-----g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~  126 (232)
                      ++.|+|++.++          +.+|+++|.+     |.|+||||++++|||+.+||.||++||||+++. ..+..... .
T Consensus        10 ~~~~~i~~~~~----------~~lLl~~R~~~~~~~~~w~~PGG~ve~gEs~~~aa~RE~~EEtGl~v~~~~~~~~~~-~   78 (155)
T d2b06a1          10 TNICLIEDLET----------QRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQNPQLVGIKN-W   78 (155)
T ss_dssp             EEEEEEEETTT----------TEEEEEEEC-----CCEEECCCCBCCTTSCHHHHHHHHHHHHHSEEEESCEEEEEEE-E
T ss_pred             EEEEEEEECCC----------CEEEEEEECCCCCCCCcEECceeEEcCCCCHHHHHHHHHHHhcCeeEeeeEEEEEEE-e
Confidence            34455566553          4677887732     679999999999999999999999999999987 54443222 1


Q ss_pred             eeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         127 IHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      . .....+...++|.+....+.+..            .|..++.|+++++++++.
T Consensus        79 ~-~~~~~~~~~~~~~~~~~~~~~~~------------~e~~~~~W~~~~el~~l~  120 (155)
T d2b06a1          79 P-LDTGGRYIVICYKATEFSGTLQS------------SEEGEVSWVQKDQIPNLN  120 (155)
T ss_dssp             E-CTTSCEEEEEEEEECEEEECCCC------------BTTBEEEEEEGGGGGGSC
T ss_pred             e-cCCCCeEEEEEEEEEecCCccCC------------CchheEEEEEHHHhccCC
Confidence            1 12234566677776544443322            356789999999999863

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Nucleoside triphosphate pyrophosphorylase (MutT)
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=6.5e-19  Score=129.31  Aligned_cols=92  Identities=22%  Similarity=0.387  Sum_probs=66.6

Q ss_pred             cEEEEEEe-----eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeeceeeeeeecCCcEEEEEEEEEEeecC
Q psy7748          74 ANVLMQMR-----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDSDLVCIHYSQSKKIILHFYALQVEKT  147 (232)
Q Consensus        74 ~~vLl~~R-----~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (232)
                      +.+|+++|     ++|.|+||||+++.|||+.+||.||++||||+.+. ..+....   .+.....+...++|.+....+
T Consensus        16 ~~vLl~~R~~~~~~~g~W~~PgG~ve~gEs~~~a~~RE~~EE~gl~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~   92 (129)
T d1puna_          16 NEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHFSLFEKL---EYEFPDRHITLWFWLVERWEG   92 (129)
T ss_dssp             SCEEEBCCCSSCSCTTCCBCSCCSCTTTSCTTHHHHHHHHHTTCSCCCCCCCSEEE---EEECSSEEEEEEEEECCCCSS
T ss_pred             CEEEEEEecCCCCCCCcEECCcceecCCCchhHHHHHHHHHHhCCccccceeeeEE---eecccccceeEEEEEEeeccC
Confidence            45778877     34899999999999999999999999999999987 4332221   122223466677777765444


Q ss_pred             cccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         148 DVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       148 ~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      .+..            .|..++.|++++++.+.
T Consensus        93 ~~~~------------~E~~~~~W~~~~el~~~  113 (129)
T d1puna_          93 EPWG------------KEGQPGEWMSLVGLNAD  113 (129)
T ss_dssp             CCCT------------TSSSCCEEECGGGCCTT
T ss_pred             cCCC------------CccceEEEEEHHHcccC
Confidence            3322            25567899999999875

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=7.3e-18  Score=128.41  Aligned_cols=112  Identities=17%  Similarity=0.170  Sum_probs=78.4

Q ss_pred             CCccceEEEEEEecCCceEEEEeccCcEEEEEEe------eCCeeecc-eeecCCCCCHHHHHhHHHHHhhCCCCc-cee
Q psy7748          48 KSGYHASHCMIFAYNDDKIFATYTARANVLMQMR------FDGYIGFP-GGLVDAGESPLEALNRELNEEINLNPK-YKV  119 (232)
Q Consensus        48 ~~~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R------~~g~w~lP-gG~ve~gEs~~~aa~REl~EEtGl~~~-~~~  119 (232)
                      .-.+.++++++++.+           +++|+++|      ++|.|.+| ||++++|||+++||+||++||||+++. +..
T Consensus        27 ~~~h~~v~v~v~~~~-----------g~vLl~rR~~~~~~~pg~w~~~~GG~ie~gEs~~~aa~REl~EE~Gi~~~~~~~   95 (161)
T d2fkba1          27 CLRHRATYIVVHDGM-----------GKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAE   95 (161)
T ss_dssp             TCCEEEEEEEEECSS-----------SCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHHHHHHHHHHHCCBSCCCEE
T ss_pred             CCcEeEEEEEEEeCC-----------CCEEEEEecCccccccccccccccccccccCcHHHHHHHHHHHHhCCccceeEE
Confidence            334567777777765           45678888      46899886 899999999999999999999999876 433


Q ss_pred             eeceeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCcccccccCCc
Q psy7748         120 KDSDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGFRGL  184 (232)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i~~~  184 (232)
                      +...+   +.........++|.+... +.+....          .|+.++.|++++++.+++..+
T Consensus        96 ~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~----------~Ev~~~~w~~~~el~~~~~~~  146 (161)
T d2fkba1          96 HGQFY---FEDKNCRVWGALFSCVSH-GPFALQE----------DEVSEVCWLTPEEITARCDEF  146 (161)
T ss_dssp             EEEEE---EEETTEEEEEEEEEEECC-CCCCCCT----------TTEEEEEEECHHHHHTTGGGB
T ss_pred             EEEEE---eecCCcEEEEEEEEEEEC-CCCcCCh----------hHeeEEEEEeHHHHhhhhhcc
Confidence            33222   223344566666666443 3322222          589999999999998876444

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein DR0079
species: Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]

Probab=99.73  E-value=2.9e-18  Score=130.82  Aligned_cols=109  Identities=16%  Similarity=0.228  Sum_probs=74.5

Q ss_pred             ccceEEEEEEecCCceEEEEeccCcEEEEEEe------eCCeeecc-eeecCCCCCHHHHHhHHHHHhhCCCCc-ceeee
Q psy7748          50 GYHASHCMIFAYNDDKIFATYTARANVLMQMR------FDGYIGFP-GGLVDAGESPLEALNRELNEEINLNPK-YKVKD  121 (232)
Q Consensus        50 ~~~a~~~vi~~~~~~~v~~~~~~~~~vLl~~R------~~g~w~lP-gG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~  121 (232)
                      ..+++++++++++           +++|+++|      ++|.|.+| ||++++|||+.+||+||++||||+++. .....
T Consensus        27 ~~~~v~~~v~~~~-----------g~~Ll~rR~~~k~~~pg~w~~~~GG~ve~gEs~~eaa~REl~EE~Gl~~~~~~~~~   95 (162)
T d2o5fa1          27 RVRVVNAFLRNSQ-----------GQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDALSWRP   95 (162)
T ss_dssp             GSEEEEEEEECTT-----------SCEEEEEC-------CCSBCCSEEEECBTTCCHHHHHHHHHHHHHCCCGGGSEEEE
T ss_pred             eEEEEEEEEEcCC-----------CCEEEEEeccCccccccccccccCCcccCCCChhhhhhhhhhheeCcceeeEEEEE
Confidence            3457788888776           35678877      56899776 999999999999999999999999987 44332


Q ss_pred             ceeeeeeecCCcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         122 SDLVCIHYSQSKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      ..... ..........++|.+... +.+...          +.|+.++.|++++++.+++
T Consensus        96 ~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~----------~~Ev~~~~W~~~eel~~~~  143 (162)
T d2o5fa1          96 LASFS-PFQTTLSSFMCVYELRSD-ATPIFN----------PNDISGGEWLTPEHLLARI  143 (162)
T ss_dssp             EEEEC-TTTSSCSSEEEEEEEECS-SCCCCC----------TTTCSEEEEECHHHHHHHH
T ss_pred             EEEec-cccccceEEEEEEEEecC-CCccCC----------hhHeeEEEEeeHHHHHHHH
Confidence            22221 112222334555665543 222221          1488899999999998875

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: Hypothetical protein PAE3301
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.73  E-value=1e-17  Score=125.66  Aligned_cols=42  Identities=36%  Similarity=0.586  Sum_probs=37.9

Q ss_pred             EEEEEEe-eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc
Q psy7748          75 NVLMQMR-FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK  116 (232)
Q Consensus        75 ~vLl~~R-~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~  116 (232)
                      +||+.+| ..|.|.||||++|+||++.+||+||++||||+++.
T Consensus        13 kvLl~~r~~~~~w~lPgG~ie~gE~~~~aa~RE~~EEtGl~~~   55 (152)
T d1k2ea_          13 KVLLVKHKRLGVYIYPGGHVEHNETPIEAVKREFEEETGIVVE   55 (152)
T ss_dssp             EEEEEECTTTCSEECSEEECCTTCCHHHHHHHHHHHHHSEEEE
T ss_pred             EEEEEEEcCCCeEECCeeEEeCCccHHHHHHHHHHHHHCCcee
Confidence            5677666 56899999999999999999999999999999976

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutT-like
domain: NUDT9 (mitochondrial ADP-ribose pyrophosphatase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.4e-13  Score=113.61  Aligned_cols=103  Identities=17%  Similarity=0.175  Sum_probs=66.6

Q ss_pred             cEEEEEEee-CCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ceeeec--------------eeeeeee------cC
Q psy7748          74 ANVLMQMRF-DGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YKVKDS--------------DLVCIHY------SQ  131 (232)
Q Consensus        74 ~~vLl~~R~-~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~~~~~--------------~~~~~~~------~~  131 (232)
                      .++|+++|. .|.|.||||+||+||++.+||+||+.||||+.+. ......              ...+.+.      ..
T Consensus       139 LqvLlIkR~d~g~WaLPGG~Vd~GEs~~~Aa~REl~EETGl~~~~~~~~~~~~~~~l~~l~~~~~~~~y~gyvddprntd  218 (292)
T d1q33a_         139 LQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTD  218 (292)
T ss_dssp             EEEEEEECTTTCSEECCCEECCTTCCHHHHHHHHHHHHHSCGGGSCSSHHHHHHHHHHHHTTTSEEEEEEEECCCTTCCS
T ss_pred             eEEEEEEecCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcccccccccccccccceeeeccccccccccccccccCCCC
Confidence            467777774 4899999999999999999999999999999865 211100              0011111      11


Q ss_pred             CcEEEEEEEEEEeecCcccccccccccccCCCccceeeEeeeCccccccc
Q psy7748         132 SKKIILHFYALQVEKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDGF  181 (232)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~i  181 (232)
                      ......++|.+....+......     ....++|..++.|++++++..+.
T Consensus       219 ~aw~etva~~~h~~~~~~~~~~-----~l~~~dEa~~v~W~~vde~~~L~  263 (292)
T d1q33a_         219 NAWMETEAVNYHDETGEIMDNL-----MLEAGDDAGKVKWVDINDKLKLY  263 (292)
T ss_dssp             SEEEEEEEEEEEESSSTTTTTC-----CCCCCTTCSEEEEEECCTTCCCS
T ss_pred             CCEEEEEEEEEEEccccccccc-----ccCCCCchheEEEEEhhccccch
Confidence            2344555666655544322111     11123578899999999998875

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: Adenine glycosylase MutY, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.48  E-value=2.1e-13  Score=99.17  Aligned_cols=87  Identities=15%  Similarity=0.137  Sum_probs=57.8

Q ss_pred             cEEEEEEe-----eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc-ce-eeeceeeeeeecCCcEEEEEEEEEEeec
Q psy7748          74 ANVLMQMR-----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK-YK-VKDSDLVCIHYSQSKKIILHFYALQVEK  146 (232)
Q Consensus        74 ~~vLl~~R-----~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (232)
                      +.+|+++|     .+|+|+||||.++.+|+ .+++.||++||+|+++. .. +....+.+++    ....+++|.+....
T Consensus        16 g~iLl~kR~~~~~~~GlWefP~g~~e~~~~-~e~l~rel~ee~gi~v~~~~~l~~~~H~fsh----~~~~~~~~~~~~~~   90 (127)
T d1rrqa2          16 GRVLIRKRDSTGLLANLWEFPSCETDGADG-KEKLEQMVGEQYGLQVELTEPIVSFEHAFSH----LVWQLTVFPGRLVH   90 (127)
T ss_dssp             SEEEEEECCSSSTTTTCEECCEEECTTTCC-HHHHHHTTC----CEEEECSCCEEEEEECSS----EEEEEEEEEEEEEC
T ss_pred             CEEEEEECCCCCCCCCceecccccccCCCC-HHHHHHHhhhhcceEEEeccccccceEecCC----eEEEEEEEEEEECC
Confidence            56788888     34899999999997777 78899999999999877 33 2222233332    24566677776654


Q ss_pred             CcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         147 TDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      +..               +..+..|++++++.+.
T Consensus        91 ~~~---------------~~~~~~Wv~~~el~~~  109 (127)
T d1rrqa2          91 GGP---------------VEEPYRLAPEDELKAY  109 (127)
T ss_dssp             CSC---------------CCTTEEEEEGGGGGGS
T ss_pred             CCc---------------cccceEEeeHHHHhHC
Confidence            321               2335789999999875

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: MutY C-terminal domain-like
domain: A/G-specific adenine DNA glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=3.8e-10  Score=82.89  Aligned_cols=91  Identities=13%  Similarity=0.103  Sum_probs=62.3

Q ss_pred             cEEEEEEe-----eCCeeecceeecCCCCCHHHHHhHHHHHhhCCCCc---ce-eeeceeeeeeecCCcEEEEEEEEEEe
Q psy7748          74 ANVLMQMR-----FDGYIGFPGGLVDAGESPLEALNRELNEEINLNPK---YK-VKDSDLVCIHYSQSKKIILHFYALQV  144 (232)
Q Consensus        74 ~~vLl~~R-----~~g~w~lPgG~ve~gEs~~~aa~REl~EEtGl~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (232)
                      +++|+++|     .+|+|+||+|.++.||++.++|.||..+|.+....   .. +....+.++    ..+..+++|.+.+
T Consensus        27 ~~iLl~kR~~~g~l~GlWefP~~~~~~~e~~~~~~~~~~~~e~~~~~~~~~~~~~~~v~H~fs----H~~~~~~v~~~~~  102 (142)
T d1x51a1          27 AQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAGPLPATHLRHLGEVVHTFS----HIKLTYQVYGLAL  102 (142)
T ss_dssp             EEEEEEECCCCSTTCSCEECCEEECCSSHHHHHHHHHHHHHHHSCCCCSTTCEECCCBCCBCS----SCEEEEEEEEEEC
T ss_pred             CEEEEEECCCCCCCCcceeeeEeeccCCcchhHHHHHHHHHHhccCcceeeeeeeccceeccC----CcceEEEEEEEEE
Confidence            57899999     34899999999999999988887776666555443   22 222222222    3367778888887


Q ss_pred             ecCcccccccccccccCCCccceeeEeeeCcccccc
Q psy7748         145 EKTDVLEIEKGALTSHDYGVEVLGTVRVPLYTMGDG  180 (232)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~E~~~~~wvpl~el~~~  180 (232)
                      ..+....            .+..+..|++.+++.+.
T Consensus       103 ~~~~~~~------------~~~~~~~W~~~~el~~~  126 (142)
T d1x51a1         103 EGQTPVT------------TVPPGARWLTQEEFHTA  126 (142)
T ss_dssp             SSCCCCC------------CCCTTEEEEEHHHHHHS
T ss_pred             eCCCccc------------ccCccCEEeeHHHcccc
Confidence            6554322            24457899999998874