Psyllid ID: psy7769
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 355 | 2.2.26 [Sep-21-2011] | |||||||
| Q0V8R7 | 384 | 5-methylcytosine rRNA met | yes | N/A | 0.980 | 0.906 | 0.305 | 4e-32 | |
| Q5M7E3 | 406 | 5-methylcytosine rRNA met | N/A | N/A | 0.650 | 0.568 | 0.360 | 2e-30 | |
| Q96CB9 | 384 | 5-methylcytosine rRNA met | yes | N/A | 0.191 | 0.177 | 0.637 | 4e-18 | |
| Q9CZ57 | 381 | 5-methylcytosine rRNA met | yes | N/A | 0.264 | 0.246 | 0.489 | 4e-18 | |
| Q0P5D8 | 338 | Putative methyltransferas | no | N/A | 0.602 | 0.633 | 0.315 | 1e-17 | |
| Q4KMK0 | 367 | Putative methyltransferas | no | N/A | 0.625 | 0.604 | 0.321 | 2e-17 | |
| Q8CCT7 | 348 | Putative methyltransferas | no | N/A | 0.605 | 0.617 | 0.308 | 1e-16 | |
| Q9H649 | 340 | Putative methyltransferas | no | N/A | 0.602 | 0.629 | 0.311 | 2e-16 | |
| Q66KI9 | 406 | 5-methylcytosine rRNA met | no | N/A | 0.183 | 0.160 | 0.575 | 9e-15 | |
| O13935 | 685 | Multisite-specific tRNA:( | yes | N/A | 0.473 | 0.245 | 0.294 | 1e-10 |
| >sp|Q0V8R7|NSUN4_BOVIN 5-methylcytosine rRNA methyltransferase NSUN4 OS=Bos taurus GN=NSUN4 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 139 bits (349), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 117/383 (30%), Positives = 180/383 (46%), Gaps = 35/383 (9%)
Query: 3 MTQSIEDIEKKD---STEERSRRQKKQSDEEEDDGSNRSSSDRH--LYSNQ--SLEASIE 55
+ + + D+ K+ + R R +KK + E + R + YS Q L SI
Sbjct: 5 VVRGVRDMLKRADFATVPRRQRHKKKWASTEPKFPATRLALQNFDMTYSVQFGDLWPSIR 64
Query: 56 TAELDKDRLVAPHDTASTGLHDFIPATQLKGMEGFITDADYMDYYRPSPEVDFKVVPE-T 114
+ L + + A + + G QLK + F+ +A + + P PE P
Sbjct: 65 VSLLSEQKYGALVNNFAAGDRVSAELEQLKARD-FVNEAVF--HREPEPENSQTAAPSPA 121
Query: 115 ELHISPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMC 174
SP L+ F+F GD+S FP + G G+ +YY MD ASLLPVLAL ++P DTVLD+C
Sbjct: 122 SWACSPNLRCFTFTRGDVSRFPPARLGSLGLMDYYLMDAASLLPVLALGLQPGDTVLDLC 181
Query: 175 AAPGGKTLVALQT-----LYPDYYCMDGASLLPVLALNIRPYDT-------VLDIHALKL 222
AAPGGKTL LQT L + S L + + P D V K
Sbjct: 182 AAPGGKTLALLQTGCCRNLAANDLSTSRTSRLQRVLHSYVPQDVRDKNRVRVTSWDGRKW 241
Query: 223 VKVGGSVVYSTCSLSPIQNDG-VVHMSLKRIWEETG---------CEIEIKHA-LKLVKV 271
++ G P D +H I++ + ++++ A L K
Sbjct: 242 GELEGDTYDRVLVDVPCTTDRHSLHEEENSIFQRSRKKERQMLPVLQVQLLAAGLLATKP 301
Query: 272 GGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSY 331
GG +VYSTCSLS +QN+ VV +++ + + +++++DL+ + + FSF +
Sbjct: 302 GGHIVYSTCSLSHLQNEYVVQGAIELLDNQYSIKVQVEDLTHFRKLFMNTFSFFP-SCQV 360
Query: 332 GHLVQPHLPSNFGPMYFCKFDKI 354
G LV P+L +NFGPMYFCK ++
Sbjct: 361 GELVIPNLMANFGPMYFCKMCRM 383
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May have S-adenosyl-L-methionine-dependent methyl-transferase activity. Bos taurus (taxid: 9913) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q5M7E3|NSUN4_XENLA 5-methylcytosine rRNA methyltransferase NSUN4 OS=Xenopus laevis GN=nsun4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 132/255 (51%), Gaps = 24/255 (9%)
Query: 124 AFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLV 183
F+F GDIS FP + G+ YY MD ASLLPVLAL+I+ +VLD+CAAPGGKTL
Sbjct: 153 CFTFSRGDISRFPQSRSDCFGLLEYYLMDAASLLPVLALDIQHGHSVLDLCAAPGGKTLA 212
Query: 184 ALQTLYPDYYCMDGAS------LLPVL------------ALNIRPYDTVL--DIHALKLV 223
LQT Y + S L VL + I +D L D+ A
Sbjct: 213 LLQTENCQYLAANDLSTSRSSRLHRVLHSYVPRDQRAEHKVRITSWDGRLWGDLEASTYD 272
Query: 224 KVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIK---HALKLVKVGGSVVYSTC 280
+V V +T S ++ + + ++ + ++ + L+ V+ GG VVYSTC
Sbjct: 273 RVLVDVPCTTDRHSLLEEENNIFHRIRTKQRQMLPLLQTELLVSGLRAVRPGGEVVYSTC 332
Query: 281 SLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQPHLP 340
SLS +QN+ VV +++ + G ++ +DLS K+ F+F + G LV PHL
Sbjct: 333 SLSQLQNECVVQRAIELAATDHGVLVKPQDLSCFREVFKNTFNFFQ-DCRVGELVVPHLT 391
Query: 341 SNFGPMYFCKFDKIK 355
+NFGPM+FCK +IK
Sbjct: 392 ANFGPMFFCKLLRIK 406
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May have S-adenosyl-L-methionine-dependent methyl-transferase activity. Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q96CB9|NSUN4_HUMAN 5-methylcytosine rRNA methyltransferase NSUN4 OS=Homo sapiens GN=NSUN4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 50/69 (72%)
Query: 119 SPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPG 178
SP L+ F+F GDIS FP + G GV YY MD ASLLPVLAL ++P D VLD+CAAPG
Sbjct: 126 SPNLRCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAAPG 185
Query: 179 GKTLVALQT 187
GKTL LQT
Sbjct: 186 GKTLALLQT 194
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May have S-adenosyl-L-methionine-dependent methyl-transferase activity. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9CZ57|NSUN4_MOUSE 5-methylcytosine rRNA methyltransferase NSUN4 OS=Mus musculus GN=Nsun4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 63/98 (64%), Gaps = 4/98 (4%)
Query: 90 FITDADYMDYYRPSPEVDFKVVPETELHISPYLQAFSFPSGDISEFPSPKRGVTGVFNYY 149
F+++A + + + PE P L SP L+ F+F GD+S FP + G G+ +YY
Sbjct: 98 FVSEA--ISHQKLEPESGLS--PTPSLDCSPNLRCFTFSRGDVSRFPPARLGSLGLMDYY 153
Query: 150 CMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQT 187
MD ASLLPVLAL ++ DTVLD+CAAPGGKTL LQT
Sbjct: 154 LMDAASLLPVLALGLQHGDTVLDLCAAPGGKTLALLQT 191
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May have S-adenosyl-L-methionine-dependent methyl-transferase activity. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q0P5D8|NSUN3_BOVIN Putative methyltransferase NSUN3 OS=Bos taurus GN=NSUN3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 112/241 (46%), Gaps = 27/241 (11%)
Query: 134 EFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDY- 192
PS + + YY ++ ASLLPVLAL +R + VLD+CAAPGGK+L LQ YP Y
Sbjct: 100 RMPSERHQTGNLKKYYLLNAASLLPVLALELRDGEKVLDLCAAPGGKSLALLQCAYPGYL 159
Query: 193 YCMDGASL-LPVLALNI-----RPYDTVLDIHALKLVKVGGS--------VVYSTCS--- 235
+C + SL L L + +P V+ + L ++G + +V + CS
Sbjct: 160 HCNEYDSLRLRWLRQTLESFIPQPLVNVIKVSELDGREMGDAQPETFDKVLVDAPCSNDR 219
Query: 236 ---LSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVH 292
S +S +R E+ ++ A+K ++ GG +VYSTC+LS +N V+
Sbjct: 220 SWLFSSDSQKAACRISQRRNLPLLQMEL-LRSAIKALRPGGLLVYSTCTLSKAENQDVIS 278
Query: 293 MSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFD 352
L + I D+ + R F+FA G LV P +GPMY K
Sbjct: 279 EVL-----NSYSNIMPVDIKEMARTCSRDFTFAPTGQECGLLVIPDKGKAWGPMYVAKLK 333
Query: 353 K 353
K
Sbjct: 334 K 334
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May have S-adenosyl-L-methionine-dependent methyl-transferase activity. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q4KMK0|NSUN3_DANRE Putative methyltransferase NSUN3 OS=Danio rerio GN=nsun3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 121/258 (46%), Gaps = 36/258 (13%)
Query: 122 LQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKT 181
LQ F P D P+ + YY ++ ASLLPVLALN++ + VLD+CAAPGGK+
Sbjct: 120 LQCFIHP--DPVRIPTQSHHTGWLKQYYLLNAASLLPVLALNVQEGENVLDLCAAPGGKS 177
Query: 182 LVALQTLYPD-YYCMDGAS-----LLPVLALNIRP------YDTVLDIHALKLVKVGG-- 227
L LQT P +C + LL L + P T+ D ++ ++ G
Sbjct: 178 LAILQTATPGLLHCNEVDQHRHDWLLKTLESYVPPSLRHLLSVTLQDGRSIGTMQPGAYD 237
Query: 228 -SVVYSTCS------LSPIQNDGVVHM----SLKRIWEETGCEIEIKHALKLVKVGGSVV 276
+V + CS +P + G + + L + +E C AL V+ GG VV
Sbjct: 238 KVLVDAPCSNDRSWLYTPDTHRGEMWLKERTQLPLLQKELLCS-----ALAAVRPGGIVV 292
Query: 277 YSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQ 336
YSTC++S +N VV L G E++ + Q + L F FA+++ S G LV
Sbjct: 293 YSTCTMSRAENQSVVEEVLASY---PGVELQEME-QQFIDSLSDHFCFAHLHPSVGQLVI 348
Query: 337 PHLPSNFGPMYFCKFDKI 354
P +GPMY + KI
Sbjct: 349 PQKGKTWGPMYVSQLKKI 366
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May have S-adenosyl-L-methionine-dependent methyl-transferase activity. Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8CCT7|NSUN3_MOUSE Putative methyltransferase NSUN3 OS=Mus musculus GN=Nsun3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 110/240 (45%), Gaps = 25/240 (10%)
Query: 134 EFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYY 193
PS + + YY ++ ASLLPVLAL +R + VLD+CAAPGGK++ LQ YP Y
Sbjct: 99 RMPSERHQTGSLKKYYLLNAASLLPVLALELRDGEAVLDLCAAPGGKSVALLQCAYPGYL 158
Query: 194 CMD------GASLLPVLALNI-RPYDTVLDIHALKLVKVGGSVVYSTCSL---SPIQNDG 243
+ G L L I +P V+ + L ++G + + + +P ND
Sbjct: 159 LCNEYDRPRGRWLRQTLESFIPQPLINVIKVSELDGREMGDAQPATFDKVLVDAPCSNDR 218
Query: 244 VVHMS------LKRIWEETG---CEIE-IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHM 293
S RI + ++E ++ A+K ++ GG +VYSTC+LS +N V+
Sbjct: 219 SWLFSSDSQKAAYRIHQRKNLPVLQVELVRSAIKALRPGGLLVYSTCTLSKAENQDVISE 278
Query: 294 SLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFDK 353
L + I D+S R F+FA + LV P +GPMY K K
Sbjct: 279 VL-----TSDSNIVPVDISGIARTFSQDFTFAPTDQKCSLLVIPEKGKAWGPMYIAKLKK 333
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May have S-adenosyl-L-methionine-dependent methyl-transferase activity. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9H649|NSUN3_HUMAN Putative methyltransferase NSUN3 OS=Homo sapiens GN=NSUN3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 111/241 (46%), Gaps = 27/241 (11%)
Query: 134 EFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDY- 192
PS + + + YY ++ ASLLPVLAL +R + VLD+CAAPGGK++ LQ P Y
Sbjct: 99 RIPSERHQIGNLKKYYLLNAASLLPVLALELRDGEKVLDLCAAPGGKSIALLQCACPGYL 158
Query: 193 YCMDGASL-LPVLALNI-----RPYDTVLDIHALKLVKVGGS--------VVYSTCS--- 235
+C + SL L L + +P V+ + L K+G + +V + CS
Sbjct: 159 HCNEYDSLRLRWLRQTLESFIPQPLINVIKVSELDGRKMGDAQPEMFDKVLVDAPCSNDR 218
Query: 236 ---LSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVH 292
S +S +R E+ ++ A+K ++ GG +VYSTC+LS +N V+
Sbjct: 219 SWLFSSDSQKASCRISQRRNLPLLQIEL-LRSAIKALRPGGILVYSTCTLSKAENQDVIS 277
Query: 293 MSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFD 352
L + I D+ R F+FA G LV P +GPMY K
Sbjct: 278 EIL-----NSHGNIMPMDIKGIARTCSHDFTFAPTGQECGLLVIPDKGKAWGPMYVAKLK 332
Query: 353 K 353
K
Sbjct: 333 K 333
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May have S-adenosyl-L-methionine-dependent methyl-transferase activity. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q66KI9|NSUN4_XENTR 5-methylcytosine rRNA methyltransferase NSUN4 OS=Xenopus tropicalis GN=nsun4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 45/66 (68%)
Query: 122 LQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKT 181
L F F GDIS FP + G+ YY MD ASLLPVLAL+++ +VLD+CAAPGGKT
Sbjct: 151 LTCFKFSRGDISRFPQSRSDSFGLLEYYLMDAASLLPVLALDVQHGHSVLDLCAAPGGKT 210
Query: 182 LVALQT 187
L LQT
Sbjct: 211 LALLQT 216
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May have S-adenosyl-L-methionine-dependent methyl-transferase activity. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O13935|TRM4B_SCHPO Multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4b OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trm4b PE=3 SV=2 | Back alignment and function description |
|---|
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 96/224 (42%), Gaps = 56/224 (25%)
Query: 147 NYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGA----SLLP 202
N + S+LP L L++ P+ +LDMCAAPG KT ++ +Y D A +L
Sbjct: 140 NINRQEAVSMLPPLFLDVEPHHVILDMCAAPGSKTAQLIEAVYKKANIKDAAHDSKNLKS 199
Query: 203 VLALNIR----PYDTVLDIHALKLVK------------------VGGS-------VVYST 233
V L I P + +H + + V GS V+
Sbjct: 200 VEGLVIANDADPKRAQMLVHQINRLNSPNILVVNHDASTMPNIYVKGSSPSDGLNVIEEK 259
Query: 234 CSLS--------PIQNDGVV--HMSLKRIWEETGC--------EIEIKHALKLVKVGGSV 275
L P DG ++SL R W I I+ L+L+KVGG +
Sbjct: 260 KILKFDRILADVPCSGDGTFRKNLSLWREWSANSAFSLHPLQLRILIR-GLQLLKVGGCL 318
Query: 276 VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLK 319
VYSTCS++PI+N+ VV +LK TG + + D+S+ L LK
Sbjct: 319 VYSTCSINPIENEAVVTAALK----ATGGAVSLVDVSKKLPLLK 358
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Methylates cytosine to m5C at several positions in different tRNAs and pre-tRNAs containing intron. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 355 | ||||||
| 91088013 | 460 | PREDICTED: similar to Nop2p [Tribolium c | 0.974 | 0.752 | 0.424 | 3e-66 | |
| 307206260 | 505 | Putative methyltransferase NSUN4 [Harpeg | 0.907 | 0.637 | 0.410 | 2e-65 | |
| 383857135 | 505 | PREDICTED: putative methyltransferase NS | 0.861 | 0.605 | 0.412 | 3e-63 | |
| 332021457 | 507 | Putative methyltransferase NSUN4 [Acromy | 0.909 | 0.637 | 0.383 | 8e-61 | |
| 350401427 | 500 | PREDICTED: putative methyltransferase NS | 0.847 | 0.602 | 0.382 | 2e-60 | |
| 340729051 | 500 | PREDICTED: putative methyltransferase NS | 0.850 | 0.604 | 0.380 | 6e-60 | |
| 380013746 | 504 | PREDICTED: putative methyltransferase NS | 0.842 | 0.593 | 0.373 | 2e-57 | |
| 328716088 | 478 | PREDICTED: putative methyltransferase NS | 0.853 | 0.633 | 0.414 | 3e-57 | |
| 157132768 | 491 | Nop2p, putative [Aedes aegypti] gi|10887 | 0.983 | 0.710 | 0.360 | 4e-55 | |
| 170028291 | 492 | Nop2p [Culex quinquefasciatus] gi|167874 | 0.974 | 0.703 | 0.365 | 4e-54 |
| >gi|91088013|ref|XP_974000.1| PREDICTED: similar to Nop2p [Tribolium castaneum] gi|270012065|gb|EFA08513.1| hypothetical protein TcasGA2_TC006166 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 162/382 (42%), Positives = 224/382 (58%), Gaps = 36/382 (9%)
Query: 4 TQSIEDIEKKDSTEERSRRQKKQSDEEEDDGSNRSSSDRHLYSNQSLEASIETAELDKDR 63
+++ +EK+ S E R+ ++K++ E S + N SL+AS++ AELD R
Sbjct: 85 VRTLFKLEKQYSKERRTVQEKQKVLREVRRIDRELESRANEPKNASLQASLDDAELDHRR 144
Query: 64 LVAPHDTASTG-LHDFIPATQLKGMEGFITDADYMDYYRPSPEVDFKVVPETE--LHISP 120
++ + S LH+F+PAT++KG E FI ++ + +Y+ +F+V E E LH
Sbjct: 145 IIDSKNALSGEILHEFVPATKIKGKEDFIPESTHYKFYKNE---NFEVFIEEEFDLHFPE 201
Query: 121 YLQAFSFPSGDISEF-PSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGG 179
+L + F G+ S+F PSP G TGV +YY MDG S+LPVLAL+IRP +T+LD+CAAPGG
Sbjct: 202 HLNVYCFEEGNRSDFEPSPS-GSTGVLDYYMMDGGSVLPVLALDIRPGNTILDLCAAPGG 260
Query: 180 KTLVALQTLYPDYYCMDGASLLP-----------VLALNIRPYD------TVLDIHALKL 222
KTL+A+QTLYP+ + S+ + LN R T D +
Sbjct: 261 KTLLAIQTLYPNRIIANDVSMSRTNRVYKVAKQFLYDLNERWLQPGKLMITNFDGRSFPQ 320
Query: 223 VKVGGSVVYSTCSL---SPIQNDGVVHMSLKRIWE-----ETGCEIEIKHALKLVKVGGS 274
+V C+ S +ND + R+ E ET C++ + +ALKLVK GG
Sbjct: 321 ENFDRVLVDVPCTTDRHSVKENDNNI-FKPSRVKERLKLPETQCDL-LFNALKLVKKGGV 378
Query: 275 VVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANIN-LSYGH 333
VVYSTCSLSPIQNDGVVHM+LKRIWEET E+ + DL+ ALR KS+F AN + YGH
Sbjct: 379 VVYSTCSLSPIQNDGVVHMTLKRIWEETKIEVVVADLAPALRQTKSVFKLANKKIMKYGH 438
Query: 334 LVQPHLPSNFGPMYFCKFDKIK 355
LV PHLP N+GP YFCK +IK
Sbjct: 439 LVVPHLPQNYGPTYFCKLKRIK 460
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307206260|gb|EFN84325.1| Putative methyltransferase NSUN4 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 142/346 (41%), Positives = 202/346 (58%), Gaps = 24/346 (6%)
Query: 27 SDEEEDDGSNRSSSDRHLYSNQSLEASIETAELDKDRLVAPHDTASTGLHDFIPATQLKG 86
++E+ED NRS S +S+EA + LD +R+V P GL++F+PATQ+KG
Sbjct: 159 TEEDEDIEQNRSK--LQPVSLKSIEADMNEISLDTNRIVNP-TVGLNGLYEFVPATQIKG 215
Query: 87 MEGFITDADYMDYYRPSPEVDFKVVPETELHISPYLQAFSFPSGDISEFPSPKRGVTGVF 146
+E ++ ++ + DYY S + V PE L YL ++F + + FP+PK+G T V
Sbjct: 216 LEDWVLESQHYDYYNQSSDFSVNVEPEPILTFPDYLNVYTFEESNNTRFPAPKKGSTDVL 275
Query: 147 NYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLAL 206
NYY +DG S+LPVLAL+++P D+VLDMCAAPGGKTL LQTL P + A L + +
Sbjct: 276 NYYLLDGTSILPVLALDLQPGDSVLDMCAAPGGKTLTILQTLMPRLLVANDAQLSRMKRI 335
Query: 207 N---------IRPYDTVLDIHALKLVKVGGSVVYSTCSLS-PIQNDG-VVHMSLKRIWEE 255
+ I + L + + VY+ + P D V+H I++
Sbjct: 336 HNVINQYVNGIGQWQDRLYVTQHDAKTISDKDVYNKILVDVPCTTDRHVLHSDENNIFKS 395
Query: 256 TGCEIEIK----------HALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCE 305
T + +K +ALK++ VGG+VVYSTCSLSPIQNDGVV ++LK+ WEET
Sbjct: 396 TRLQERLKIPELQAGILTNALKIIPVGGTVVYSTCSLSPIQNDGVVGLALKQAWEETNSI 455
Query: 306 IEIKDLSQALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKF 351
+ +KD+ +ALRPL L+ F N L YGH+V P L +N+GPMYFCK
Sbjct: 456 MIVKDMGKALRPLNCLYKFGNFGLRYGHIVIPTLKNNWGPMYFCKI 501
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383857135|ref|XP_003704061.1| PREDICTED: putative methyltransferase NSUN4-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 136/330 (41%), Positives = 197/330 (59%), Gaps = 24/330 (7%)
Query: 48 QSLEASIETAELDKDRLVAPHDTASTGLHDFIPATQLKGMEGFITDADYMDYYRPSPEVD 107
QS+E + E+D R++ P+ S LH+++PAT++KG++ ++ ++D +Y + +
Sbjct: 177 QSIEQELNEVEIDSSRIIEPNVNLSL-LHEYVPATKIKGLDDWVLESDQYKFYTKAQDFK 235
Query: 108 FKVVPETELHISPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPY 167
+V E+ L +L + G+ S FP+PK G TGV +YY MD S+LPVLAL+I+P
Sbjct: 236 VDIVKESVLSFPEHLHVYIHEKGNNSRFPNPKIGTTGVRDYYLMDAGSILPVLALDIQPN 295
Query: 168 DTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALN--IRPYD------------T 213
D VLDMCAAPGGKTL LQTL P + S V + I+ + T
Sbjct: 296 DVVLDMCAAPGGKTLAILQTLLPQVVVANDVSHSRVRRIKDVIQQFGSDIPELQNMFVVT 355
Query: 214 VLDIHALKLVKVGGSV---VYSTCSLSPIQNDGVVHMSLKRIWE-----ETGCEIEIKHA 265
+D A+ V + V T ++ D S RI E E EI + +A
Sbjct: 356 EMDARAIDEKNVYNKILADVPCTTDRHVLRTDENNIFSPSRIKERLKIPEIQAEI-LSNA 414
Query: 266 LKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFA 325
KLV VGG+VVYSTC+LSPIQNDGVV ++LK++WEETG + +KD+S+AL PLKS++SF
Sbjct: 415 FKLVMVGGTVVYSTCTLSPIQNDGVVQVALKKVWEETGAVMAVKDMSEALLPLKSVYSFG 474
Query: 326 NINLSYGHLVQPHLPSNFGPMYFCKFDKIK 355
++L YGH++ P + SN GPMYFCK +K++
Sbjct: 475 TVDLKYGHIIIPTVNSNCGPMYFCKIEKVQ 504
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332021457|gb|EGI61825.1| Putative methyltransferase NSUN4 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 240 bits (612), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 133/347 (38%), Positives = 198/347 (57%), Gaps = 24/347 (6%)
Query: 32 DDGSNRSSSDRHL--YSNQSLEASIETAELDKDRLVAPHDTASTGLHDFIPATQLKGMEG 89
DD N + ++ L + +E+ + LD++R++ P + +GL++F+PAT++KGME
Sbjct: 162 DDAENVAVENQGLQPVEMKPIESDLNKIALDENRIIQP-NVGLSGLYEFVPATKIKGMED 220
Query: 90 FITDADYMDYYRPSPEVDFKVVPETELHISPYLQAFSFPSGDISEFPSPKRGVTGVFNYY 149
+I ++ + YY+ E L YL ++F + S FPSPK+G TGV +YY
Sbjct: 221 WILESQHYGYYKEGANFSVNNEKEVLLTFPQYLNIYTFEENNDSRFPSPKKGSTGVLDYY 280
Query: 150 CMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALN-- 207
+DGAS+LPVLAL+++P D VLDMCAAPGGKTL LQT P+ + V +N
Sbjct: 281 LLDGASVLPVLALDLQPGDAVLDMCAAPGGKTLSILQTFMPNIMVANDIQKSRVDRINKV 340
Query: 208 -------IRPYDTVLDIHALKLVKVGGSVVYSTCSLS-PIQNDG-VVHMSLKRIWEETGC 258
I ++ L + + +Y+ + P D V+H +++
Sbjct: 341 INQYTAGIGQWEDRLRVTERDARFIDDKDMYNKILVDVPCTTDRHVLHSEENNMFKPQRI 400
Query: 259 EIEIK----------HALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEI 308
+K +ALK++ VGG+VVYSTCSLSPIQNDGVV M+LK++WEET + +
Sbjct: 401 RERLKLPELQAAILTNALKIISVGGTVVYSTCSLSPIQNDGVVGMALKKVWEETNFIMIV 460
Query: 309 KDLSQALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFDKIK 355
KD+S+AL PLK L+ F N L YGH+ P L +N+GPMYFCK + +
Sbjct: 461 KDMSEALSPLKCLYKFGNFGLKYGHIAIPTLQNNWGPMYFCKIVRTR 507
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350401427|ref|XP_003486147.1| PREDICTED: putative methyltransferase NSUN4-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 128/335 (38%), Positives = 198/335 (59%), Gaps = 34/335 (10%)
Query: 48 QSLEASIETAELDKDRLV-APHDTASTGLHDFIPATQLKGMEGFITDADYMDYYRPSPEV 106
+S++ ++ ELD +R+V +P D+A L ++IPAT++KG++ ++ ++DY +Y + +
Sbjct: 173 KSIDENLNEVELDTNRIVNSPVDSAI--LQEYIPATKIKGLDDWVLESDYYRFYDKASDF 230
Query: 107 DFKVVPETELHISPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRP 166
V E L +L ++F + S FP+PK+G TGV +YY DG S+LPVLAL+I+
Sbjct: 231 QINVEKEFVLPFPEHLHMYAFERENNSRFPNPKKGSTGVSDYYLFDGGSILPVLALDIQF 290
Query: 167 YDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKVG 226
D VLDMCAAPGGK L LQTL P + V I+ V++ + L + +
Sbjct: 291 NDMVLDMCAAPGGKALTILQTLMPRILVAND-----VTESRIKRLKNVMNQYVLNMCEKE 345
Query: 227 GSVVYSTCSLSPIQNDG----------------VVHMSLKRIWEETGCEIEIKH------ 264
++ + I +G ++H I++ + + +K
Sbjct: 346 NMLIITQQDARAIDENGRYNKILVDVPCTTDRHILHSDDNNIFKPSRVKERLKMPEVQSE 405
Query: 265 ----ALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKS 320
ALKLV VGG+VVYSTCSLSP+QNDGVVH++LK+ WEE + +KD+++AL PL+
Sbjct: 406 ILTTALKLVSVGGTVVYSTCSLSPVQNDGVVHVALKKAWEENNSVMVVKDMTEALLPLRC 465
Query: 321 LFSFANINLSYGHLVQPHLPSNFGPMYFCKFDKIK 355
L++F NI+L YGH+V P+L +N+GPMYFCK K++
Sbjct: 466 LYNFGNIDLKYGHIVVPNLKNNWGPMYFCKMVKVQ 500
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340729051|ref|XP_003402823.1| PREDICTED: putative methyltransferase NSUN4-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 127/334 (38%), Positives = 192/334 (57%), Gaps = 32/334 (9%)
Query: 48 QSLEASIETAELDKDRLVAPHDTASTGLHDFIPATQLKGMEGFITDADYMDYYRPSPEVD 107
+S++ ++ ELD +R+V + LH++IPAT++KG++ ++ ++DY +Y +
Sbjct: 173 KSIDENLNEVELDTNRIVNSSVDLAI-LHEYIPATKIKGLDDWVLESDYYKFYDKASGFQ 231
Query: 108 FKVVPETELHISPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPY 167
V E L YL ++F + S FP+PK+G TGV +YY DG S+LPVLAL+I+
Sbjct: 232 INVEKEFVLPFPEYLHTYTFERENNSRFPNPKKGSTGVSDYYLFDGGSILPVLALDIQFN 291
Query: 168 DTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKVGG 227
D VLDMCAAPGGK L LQTL P + V I+ V++ + + +
Sbjct: 292 DMVLDMCAAPGGKALTILQTLMPRILVAND-----VTQSRIKRLKNVMNQYVSNMCQKEN 346
Query: 228 SVVYSTCSLSPIQNDG----------------VVHMSLKRIWEETGCEIEIKH------- 264
++ + I +G ++H I++ + + +K
Sbjct: 347 MLIITQQDARAIDENGRYNKILVDVPCTTDRHILHSDDNNIFKPSRIKERLKMPEIQSEI 406
Query: 265 ---ALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSL 321
ALKLV VGG+VVYSTCSLSP+QNDGVVH++LKR WEE + +KD+++AL PL+ L
Sbjct: 407 LTTALKLVSVGGTVVYSTCSLSPVQNDGVVHVALKRAWEENNSVMVVKDMTEALLPLRCL 466
Query: 322 FSFANINLSYGHLVQPHLPSNFGPMYFCKFDKIK 355
++F NI+L YGH+V P L +N+GPMYFCK K++
Sbjct: 467 YNFGNIDLKYGHIVVPDLKNNWGPMYFCKMVKVQ 500
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380013746|ref|XP_003690910.1| PREDICTED: putative methyltransferase NSUN4-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 126/337 (37%), Positives = 191/337 (56%), Gaps = 38/337 (11%)
Query: 48 QSLEASIETAELDKDRLVAPHDTASTGLHDFIPATQLKGMEGFITDADYMDYYRPSPEVD 107
QS++ S+ +D R+V S L +++PAT++KG++ ++ ++D+ +Y + D
Sbjct: 177 QSIDTSLNDVNIDNTRIVDSSVNLSM-LQEYVPATKIKGLDDWVLESDHYKFYTEAD--D 233
Query: 108 FKVVPETELHISP---YLQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNI 164
FKV E E H+ P YL ++F + + FPSPK+G TGV +YY DG S+LPVLAL+I
Sbjct: 234 FKVNIENE-HVLPFPEYLHVYTFERDNYTRFPSPKKGTTGVLDYYLFDGGSILPVLALDI 292
Query: 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVK 224
+ D VLDMCAAPGGK L LQTL P + V+ I+ V++ + +
Sbjct: 293 QLGDIVLDMCAAPGGKALTILQTLMPRLVIAND-----VVESRIKRIKNVMNQFVSNICE 347
Query: 225 VGGSVVYSTCSLSPIQNDGV----------------VHMSLKRIWEETGCEIEIK----- 263
+ + I +G +H I++ + + +K
Sbjct: 348 KENMFLITQQDARAISENGRYNKILVDVPCTTDRHNLHSDENNIFKPSRVKERLKLPEIQ 407
Query: 264 -----HALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPL 318
+ALKLV +GG+VVYSTCSLSPIQNDGVV ++LKR W+E+ C + +KD+++AL PL
Sbjct: 408 SEILTNALKLVSIGGTVVYSTCSLSPIQNDGVVQVALKRAWQESNCVMVVKDMTEALLPL 467
Query: 319 KSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFDKIK 355
+ ++ F I L YGH+V P +N+GPMYFCK K++
Sbjct: 468 RCIYDFGRIGLKYGHIVIPTCHNNWGPMYFCKLVKVQ 504
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328716088|ref|XP_003245829.1| PREDICTED: putative methyltransferase NSUN4-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 138/333 (41%), Positives = 189/333 (56%), Gaps = 30/333 (9%)
Query: 49 SLEASIETAELDKDRLVAPHDTASTG-LHDFIPATQLKGMEGFITDADYMDYYRPSPEVD 107
SL S+ AE D+ RL+ P ++ G L+ FIPAT+L G +I ++ + YY + +
Sbjct: 150 SLHESLLEAEHDESRLIDPEANSNIGGLYQFIPATELHGKSDWIPESQHYQYYEENSDFP 209
Query: 108 FKVV-PETELHISPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRP 166
++ E+ L+I P+LQ F+F GD + FP PK G T V YY MDG S+LPVLAL+++
Sbjct: 210 INILNEESLLNIPPHLQIFTFDRGDFTPFPHPKTGATKVSGYYLMDGGSILPVLALDLQL 269
Query: 167 YDTVLDMCAAPGGKTLVALQTLYPD-YYCMD----------------------GASLLPV 203
D VLDMC+APGGK L LQTL P+ C D S L
Sbjct: 270 GDRVLDMCSAPGGKALATLQTLLPESLVCNDIQESRIKKIHNVMSEYISDYQSWGSRLMF 329
Query: 204 LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEI- 262
+N R + D++ LV V SL +N+ K + + +I
Sbjct: 330 TQMNARSLNEP-DVYNKILVDV--PCTNDRHSLENNENNMFKPTRAKERLQLPEIQADIL 386
Query: 263 KHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLF 322
K AL + VGG+VVYSTCSLSPIQNDGVV M+LK+IWEET +I +KDL++ RPLKSL+
Sbjct: 387 KSALMNIAVGGTVVYSTCSLSPIQNDGVVKMALKKIWEETNHQIIVKDLTKQFRPLKSLY 446
Query: 323 SFANINLSYGHLVQPHLPSNFGPMYFCKFDKIK 355
SF+ L +G +V P LP N+GP+Y CK ++K
Sbjct: 447 SFSK-GLKFGQMVMPFLPLNYGPLYLCKLVRVK 478
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157132768|ref|XP_001662635.1| Nop2p, putative [Aedes aegypti] gi|108871080|gb|EAT35305.1| AAEL012520-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 136/377 (36%), Positives = 211/377 (55%), Gaps = 28/377 (7%)
Query: 1 MKMTQSIEDIEKKDSTEERSRRQKKQSDEEEDDGSNRSSSDRHLYSNQSLEASI-ETAEL 59
K+ Q IE + +E + K+ + E +++ + +SL ++ + AE+
Sbjct: 113 FKLDQKIEAFAETQQRQELEKLYKEDVPDLEGVREVNETAEEFVDYKKSLNRTLRDDAEM 172
Query: 60 DKDRLVAPHDTASTGLHDFIPATQLKGMEGFITDADYMDYYRPSPEVDFKVVPETELHIS 119
D RL+ H+ GL +FIPA++LKGME FI+++D+ YY S + + E I
Sbjct: 173 DFQRLI-DHNVGVAGLQEFIPASKLKGMEDFISESDHYKYYNNSADFPVSIEMEHSFEIP 231
Query: 120 PYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGG 179
L+ FS+ G++S+F P+ TGV +++ MDGAS+LP LAL+++P D VLD CA+PGG
Sbjct: 232 ENLEIFSYERGNVSDFRPPRSCSTGVLSHFLMDGASVLPALALDVQPGDRVLDACASPGG 291
Query: 180 KTLVALQTLYP-DYYCMDG--------ASLLPVLALNI-------RPYDTVLDIHALKLV 223
K+L+ LQTL P C D L+ N R + T D +K
Sbjct: 292 KSLLMLQTLRPGTLVCNDVQESRVNKIKKLMNSYFYNFGEACKKQRCFVTHQDARDIKEY 351
Query: 224 KVGGSVVY----STCSLSPIQNDGVVHMSLKRIWEETGC-EIE---IKHALKLVKVGGSV 275
++ ++ +T S ++ND + S R+ E E++ + + +KL++ GG++
Sbjct: 352 EMYDRILVDVPCTTDRHSVMENDNNIFKS-SRVKERLRLPELQAGILTNCMKLLRPGGTL 410
Query: 276 VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANIN-LSYGHL 334
VYSTCSLSP+QNDGVVHM+L ++ +TG + +KDLS ++P ++ FA N L YG L
Sbjct: 411 VYSTCSLSPVQNDGVVHMALSNVFSDTGMTLTVKDLSLVMQPFSDMYKFAYPNTLKYGQL 470
Query: 335 VQPHLPSNFGPMYFCKF 351
V P LP+NFGPMYFCK
Sbjct: 471 VLPFLPANFGPMYFCKL 487
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170028291|ref|XP_001842029.1| Nop2p [Culex quinquefasciatus] gi|167874184|gb|EDS37567.1| Nop2p [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 139/380 (36%), Positives = 208/380 (54%), Gaps = 34/380 (8%)
Query: 1 MKMTQSIEDIEKKDSTEERSRRQKKQSDE----EEDDGSNRSSSDRHLYSNQSLEASIET 56
KM Q IE + +E R K+ E EE + S D +++L+ +
Sbjct: 114 FKMDQRIEAFAENRERQEMERLYKEDVPEVGTREEVEAKEEGSVDFKKSLSKTLQ---DD 170
Query: 57 AELDKDRLVAPHDTASTGLHDFIPATQLKGMEGFITDADYMDYYRPSPEVDFKVVPETEL 116
E+D R++ P D ++ LH+FIPAT+LKGME ++ ++D+ YY S + + E
Sbjct: 171 KEMDFQRIIDP-DFGTSALHEFIPATKLKGMEDYVPESDHYKYYSNSADFPVTIEMENSF 229
Query: 117 HISPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAA 176
I L +++ G+ S+F P+ TGV +++ +DGAS+LP LAL+++P D VLD CAA
Sbjct: 230 EIPQNLDIYTYERGNCSDFRPPRNCSTGVLSHFLLDGASILPALALDVQPGDRVLDACAA 289
Query: 177 PGGKTLVALQTLYP-DYYCMD------------GASLLPVLALNI---RPYDTVLDIHAL 220
PGGK+L+ LQTL P C D S L + N R + T D L
Sbjct: 290 PGGKSLLLLQTLRPGTLVCNDVQESRVNRIRKLMGSYLYDFSANWKQKRCFITHGDARNL 349
Query: 221 KLVKVGGSVVY----STCSLSPIQNDGVVHMSLKRIWEETGC-EIE---IKHALKLVKVG 272
+ ++ +T S ++ND + S R+ E E++ + + L+L++ G
Sbjct: 350 TEYDMYDRILVDVPCTTDRHSVMENDNNIFKS-SRVKERLRLPELQAGLLANCLRLLRPG 408
Query: 273 GSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANIN-LSY 331
GS+VYSTCSLSP+QNDGVVHM+L ++ +TG + ++DLSQ ++P ++ FA N L Y
Sbjct: 409 GSLVYSTCSLSPVQNDGVVHMALSNVFNDTGMTVTVRDLSQVMQPFSDMYKFAYPNTLKY 468
Query: 332 GHLVQPHLPSNFGPMYFCKF 351
G LV P LP NFGPMYFCK
Sbjct: 469 GQLVLPFLPVNFGPMYFCKL 488
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 355 | ||||||
| UNIPROTKB|F1S3W1 | 383 | NSUN4 "Uncharacterized protein | 0.512 | 0.475 | 0.369 | 3.8e-36 | |
| UNIPROTKB|Q0V8R7 | 384 | NSUN4 "5-methylcytosine rRNA m | 0.512 | 0.473 | 0.367 | 2.4e-35 | |
| MGI|MGI:1919431 | 381 | Nsun4 "NOL1/NOP2/Sun domain fa | 0.281 | 0.262 | 0.476 | 2.4e-31 | |
| UNIPROTKB|Q96CB9 | 384 | NSUN4 "5-methylcytosine rRNA m | 0.194 | 0.179 | 0.637 | 3.5e-31 | |
| ZFIN|ZDB-GENE-041212-77 | 327 | nsun4 "NOL1/NOP2/Sun domain fa | 0.292 | 0.318 | 0.428 | 1e-30 | |
| UNIPROTKB|E1C522 | 404 | NSUN4 "Uncharacterized protein | 0.214 | 0.188 | 0.526 | 9.9e-28 | |
| ZFIN|ZDB-GENE-050706-95 | 375 | nsun3 "NOP2/Sun domain family, | 0.188 | 0.178 | 0.478 | 3.3e-17 | |
| MGI|MGI:2146565 | 348 | Nsun3 "NOL1/NOP2/Sun domain fa | 0.160 | 0.163 | 0.508 | 1.4e-15 | |
| RGD|1559652 | 233 | Nsun4 "NOP2/Sun domain family, | 0.247 | 0.377 | 0.404 | 1.2e-12 | |
| POMBASE|SPAC23C4.17 | 685 | trm402 "tRNA (cytosine-5-)-met | 0.318 | 0.164 | 0.318 | 1.8e-10 |
| UNIPROTKB|F1S3W1 NSUN4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 256 (95.2 bits), Expect = 3.8e-36, Sum P(2) = 3.8e-36
Identities = 71/192 (36%), Positives = 97/192 (50%)
Query: 3 MTQSIEDIEKK-D--STEERSRRQKKQSDEEEDDGSNRSSSDRH--LYSNQ--SLEASIE 55
+ +S D+ K+ D + R R +KK + E + R + YS Q L SI
Sbjct: 5 VARSARDLLKRADLATVPRRQRHKKKWAATEPKFPATRLALQNFDMTYSMQFGDLWPSIR 64
Query: 56 TAELDKDRLVAPHDTASTGLHDFIPATQLKGMEGFITDADYMDYYRPSPEVDFKVVPETE 115
+ L + + A + + H QL + F+ +A + P PE P
Sbjct: 65 VSLLSEQKYGALVNNFAAWDHVSTELEQLNAKD-FVNEAAFRG--EPEPEDGQAAAPPAA 121
Query: 116 LHISPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCA 175
SP L+ F+F GD+S FP + G GV +YY MD ASLLPVLAL ++P DTVLD+CA
Sbjct: 122 WSCSPNLRCFTFTRGDVSRFPPARLGSLGVMDYYLMDAASLLPVLALGLQPGDTVLDLCA 181
Query: 176 APGGKTLVALQT 187
APGGKTL LQT
Sbjct: 182 APGGKTLAMLQT 193
|
|
| UNIPROTKB|Q0V8R7 NSUN4 "5-methylcytosine rRNA methyltransferase NSUN4" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 252 (93.8 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
Identities = 71/193 (36%), Positives = 103/193 (53%)
Query: 3 MTQSIEDIEKK-D-STEERSRRQKKQ--SDEEEDDGSNRSSSDRHL-YSNQ--SLEASIE 55
+ + + D+ K+ D +T R +R KK+ S E + + + + + YS Q L SI
Sbjct: 5 VVRGVRDMLKRADFATVPRRQRHKKKWASTEPKFPATRLALQNFDMTYSVQFGDLWPSIR 64
Query: 56 TAELDKDRLVAPHDTASTGLHDFIPATQLKGMEGFITDADYMDYYRPSPEVDFKVVPE-T 114
+ L + + A + + G QLK + F+ +A + + P PE P
Sbjct: 65 VSLLSEQKYGALVNNFAAGDRVSAELEQLKARD-FVNEAVF--HREPEPENSQTAAPSPA 121
Query: 115 ELHISPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMC 174
SP L+ F+F GD+S FP + G G+ +YY MD ASLLPVLAL ++P DTVLD+C
Sbjct: 122 SWACSPNLRCFTFTRGDVSRFPPARLGSLGLMDYYLMDAASLLPVLALGLQPGDTVLDLC 181
Query: 175 AAPGGKTLVALQT 187
AAPGGKTL LQT
Sbjct: 182 AAPGGKTLALLQT 194
|
|
| MGI|MGI:1919431 Nsun4 "NOL1/NOP2/Sun domain family, member 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 229 (85.7 bits), Expect = 2.4e-31, Sum P(2) = 2.4e-31
Identities = 50/105 (47%), Positives = 66/105 (62%)
Query: 83 QLKGMEGFITDADYMDYYRPSPEVDFKVVPETELHISPYLQAFSFPSGDISEFPSPKRGV 142
QL + F+++A + + + PE P L SP L+ F+F GD+S FP + G
Sbjct: 92 QLSAKD-FVSEA--ISHQKLEPESGLSPTPS--LDCSPNLRCFTFSRGDVSRFPPARLGS 146
Query: 143 TGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQT 187
G+ +YY MD ASLLPVLAL ++ DTVLD+CAAPGGKTL LQT
Sbjct: 147 LGLMDYYLMDAASLLPVLALGLQHGDTVLDLCAAPGGKTLALLQT 191
|
|
| UNIPROTKB|Q96CB9 NSUN4 "5-methylcytosine rRNA methyltransferase NSUN4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 223 (83.6 bits), Expect = 3.5e-31, Sum P(2) = 3.5e-31
Identities = 44/69 (63%), Positives = 50/69 (72%)
Query: 119 SPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPG 178
SP L+ F+F GDIS FP + G GV YY MD ASLLPVLAL ++P D VLD+CAAPG
Sbjct: 126 SPNLRCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAAPG 185
Query: 179 GKTLVALQT 187
GKTL LQT
Sbjct: 186 GKTLALLQT 194
|
|
| ZFIN|ZDB-GENE-041212-77 nsun4 "NOL1/NOP2/Sun domain family, member 4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 206 (77.6 bits), Expect = 1.0e-30, Sum P(2) = 1.0e-30
Identities = 48/112 (42%), Positives = 64/112 (57%)
Query: 83 QLKGMEGFIT-DADYMDYYRPS-----PEVDFKVVPETELH--ISPYLQAFSFPSGDISE 134
+ +G FIT D + ++ S P D V L I+P ++ FP GDIS
Sbjct: 25 EAEGCRDFITIDCSRNEVHKSSQDPTTPHNDSSDVESAPLQTSITPDIKCLVFPRGDISR 84
Query: 135 FPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQ 186
F + +G+ YY +D AS+LPVLAL++RP TVLD+CAAPGGKTL LQ
Sbjct: 85 FKPARPDSSGILGYYLLDAASVLPVLALDVRPGQTVLDLCAAPGGKTLALLQ 136
|
|
| UNIPROTKB|E1C522 NSUN4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 204 (76.9 bits), Expect = 9.9e-28, Sum P(2) = 9.9e-28
Identities = 40/76 (52%), Positives = 51/76 (67%)
Query: 112 PETELHISPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVL 171
P +S ++ ++FP GDIS F + G+ +YY MD ASLLPVLALN++P D VL
Sbjct: 142 PLLRASLSSNVKCYTFPRGDISRFHPARPDSLGILSYYLMDAASLLPVLALNVQPDDFVL 201
Query: 172 DMCAAPGGKTLVALQT 187
D+CAAPGGK L LQT
Sbjct: 202 DLCAAPGGKMLALLQT 217
|
|
| ZFIN|ZDB-GENE-050706-95 nsun3 "NOP2/Sun domain family, member 3" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 150 (57.9 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
Identities = 33/69 (47%), Positives = 42/69 (60%)
Query: 122 LQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKT 181
LQ F P D P+ + YY ++ ASLLPVLALN++ + VLD+CAAPGGK+
Sbjct: 128 LQCFIHP--DPVRIPTQSHHTGWLKQYYLLNAASLLPVLALNVQEGENVLDLCAAPGGKS 185
Query: 182 LVALQTLYP 190
L LQT P
Sbjct: 186 LAILQTATP 194
|
|
| MGI|MGI:2146565 Nsun3 "NOL1/NOP2/Sun domain family member 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 151 (58.2 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 29/57 (50%), Positives = 38/57 (66%)
Query: 136 PSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDY 192
PS + + YY ++ ASLLPVLAL +R + VLD+CAAPGGK++ LQ YP Y
Sbjct: 101 PSERHQTGSLKKYYLLNAASLLPVLALELRDGEAVLDLCAAPGGKSVALLQCAYPGY 157
|
|
| RGD|1559652 Nsun4 "NOP2/Sun domain family, member 4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 173 (66.0 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 36/89 (40%), Positives = 54/89 (60%)
Query: 266 LKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFA 325
L K GG VVYSTCSLS +QN+ VV +++ + + +++++DLS + F F
Sbjct: 145 LLATKPGGHVVYSTCSLSHLQNEYVVQGAIELLANQYNIKVQVEDLSHFRKLFMDTFCFL 204
Query: 326 NINLSYGHLVQPHLPSNFGPMYFCKFDKI 354
+ G LV P+L +NFGPMYFCK ++
Sbjct: 205 P-SCQVGELVIPNLMANFGPMYFCKLHRV 232
|
|
| POMBASE|SPAC23C4.17 trm402 "tRNA (cytosine-5-)-methyltransferase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 122 (48.0 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 42/132 (31%), Positives = 66/132 (50%)
Query: 198 ASLLP-VLALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDGVV--HMSLKRIWE 254
AS +P + P D + I K++K + CS DG ++SL R W
Sbjct: 236 ASTMPNIYVKGSSPSDGLNVIEEKKILKFDRILADVPCS-----GDGTFRKNLSLWREWS 290
Query: 255 ETGC----EIEIK---HALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIE 307
++++ L+L+KVGG +VYSTCS++PI+N+ VV +LK TG +
Sbjct: 291 ANSAFSLHPLQLRILIRGLQLLKVGGCLVYSTCSINPIENEAVVTAALKA----TGGAVS 346
Query: 308 IKDLSQALRPLK 319
+ D+S+ L LK
Sbjct: 347 LVDVSKKLPLLK 358
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0V8R7 | NSUN4_BOVIN | 2, ., 1, ., 1, ., - | 0.3054 | 0.9802 | 0.9062 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 355 | |||
| COG0144 | 355 | COG0144, Sun, tRNA and rRNA cytosine-C5-methylases | 5e-20 | |
| TIGR00446 | 264 | TIGR00446, nop2p, NOL1/NOP2/sun family putative RN | 1e-15 | |
| pfam01189 | 277 | pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family | 3e-08 | |
| PRK14904 | 445 | PRK14904, PRK14904, 16S rRNA methyltransferase B; | 7e-08 | |
| PRK14902 | 444 | PRK14902, PRK14902, 16S rRNA methyltransferase B; | 2e-07 | |
| TIGR00563 | 426 | TIGR00563, rsmB, ribosomal RNA small subunit methy | 1e-06 | |
| PRK10901 | 427 | PRK10901, PRK10901, 16S rRNA methyltransferase B; | 2e-05 | |
| PRK11933 | 470 | PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransf | 9e-05 | |
| PRK14903 | 431 | PRK14903, PRK14903, 16S rRNA methyltransferase B; | 2e-04 | |
| PRK11933 | 470 | PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransf | 4e-04 | |
| PRK14901 | 434 | PRK14901, PRK14901, 16S rRNA methyltransferase B; | 5e-04 | |
| PRK14902 | 444 | PRK14902, PRK14902, 16S rRNA methyltransferase B; | 6e-04 | |
| PRK11933 | 470 | PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransf | 6e-04 | |
| PRK14901 | 434 | PRK14901, PRK14901, 16S rRNA methyltransferase B; | 6e-04 | |
| PRK14902 | 444 | PRK14902, PRK14902, 16S rRNA methyltransferase B; | 7e-04 | |
| PRK14901 | 434 | PRK14901, PRK14901, 16S rRNA methyltransferase B; | 0.002 |
| >gnl|CDD|223222 COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 5e-20
Identities = 65/240 (27%), Positives = 96/240 (40%), Gaps = 54/240 (22%)
Query: 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALN 207
Y D AS LP L L+ +P + VLD+CAAPGGKT + M+ + V+A++
Sbjct: 138 IYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAE-------LMENEGAI-VVAVD 189
Query: 208 IRP------YDTV--LDIHALKLVKVGGSVVYST---------------CSLSPIQNDGV 244
+ P + + L + + +V + CS GV
Sbjct: 190 VSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRILLDAPCS-----GTGV 244
Query: 245 VHMSLKRIWEETGCEIE---------IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSL 295
+ W T +I + ALKL+K GG +VYSTCSL+P +N+ VV L
Sbjct: 245 IRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFL 304
Query: 296 KRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFDKIK 355
+R E+E L P LF L + PH+ G + K K +
Sbjct: 305 ER---HPDFELEPVRL-----PWGPLFEGLGSELGKTRRLYPHVHGTDG-FFIAKLRKKR 355
|
Length = 355 |
| >gnl|CDD|188051 TIGR00446, nop2p, NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 1e-15
Identities = 51/179 (28%), Positives = 77/179 (43%), Gaps = 43/179 (24%)
Query: 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKT------------LVA-------LQTL 188
YY + +S++P +AL R + VLDM AAPGGKT +VA + L
Sbjct: 53 YYPQEASSMIPPIALEPREDERVLDMAAAPGGKTTQISQLMKNKGCIVANEISKSRTKAL 112
Query: 189 YPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDGVVHM- 247
+ M G V+ + R + L LK + ++ + CS +GV+
Sbjct: 113 ISNINRM-GVLNTIVINADGRKFGAYL----LKFDAI---LLDAPCS-----GEGVIRKD 159
Query: 248 -SLKRIWEETGCEIEIKH--------ALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
S KR W E A+ +K GG +VYSTCSL +N+ V+ L++
Sbjct: 160 PSRKRNWSEEDI-KYCSLLQKELIDAAIDALKPGGVLVYSTCSLEVEENEEVIDYILRK 217
|
[Protein synthesis, tRNA and rRNA base modification]. Length = 264 |
| >gnl|CDD|201649 pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 3e-08
Identities = 47/184 (25%), Positives = 69/184 (37%), Gaps = 50/184 (27%)
Query: 148 YYCM-DGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLAL 206
+ D +S L +ALN + + +LDMCAAPGGKT + L + V+A+
Sbjct: 65 AVTVQDASSQLDAIALNPQEDEFILDMCAAPGGKTTHIAE-LMKNEGT--------VVAV 115
Query: 207 NIRPYDTVLDIHALKLVK-------------VGGSVVYSTCSLSPIQND----------- 242
+ LK V G L + D
Sbjct: 116 DRNK-------QRLKRVYANIQRLGVFNIIVQEGDARQIDQKLLGGEFDRILLDAPCSGT 168
Query: 243 GVVHMSLKRIWEETGCEIE---------IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHM 293
GV+ W +I +K A LVK GG +VYSTCS+ P +N+ V+
Sbjct: 169 GVIRRDPDIKWLRREADIAQLAELQKELLKAAWDLVKPGGVLVYSTCSVLPEENEAVIKY 228
Query: 294 SLKR 297
L++
Sbjct: 229 FLQK 232
|
Length = 277 |
| >gnl|CDD|237858 PRK14904, PRK14904, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 7e-08
Identities = 47/176 (26%), Positives = 75/176 (42%), Gaps = 50/176 (28%)
Query: 154 ASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPYDT 213
L L LN +P TVLD+CAAPGGK ++ + L N R T
Sbjct: 238 TQALACLLLNPQPGSTVLDLCAAPGGK-----------------STFMAELMQN-RGQIT 279
Query: 214 VLDIHALKLVKV-------GGSVVYSTCS-----LSPIQND-----------GVV----- 245
+D + KL K+ G +++ + Q D GV+
Sbjct: 280 AVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAPCTGTGVLGRRAE 339
Query: 246 ---HMSLKRIWEETGCEIEI-KHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
++ +++ E G + E+ HA L+K GG +VY+TCS+ P +N+ + L+R
Sbjct: 340 LRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQR 395
|
Length = 445 |
| >gnl|CDD|237857 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 2e-07
Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 25/98 (25%)
Query: 129 SGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTL 188
G+I+ K G D +S+L AL+ + DTVLD CAAPGGKT + L
Sbjct: 218 KGNIAGTDLFKDG-----LITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELL 272
Query: 189 YPDYYCMDGASLLPVLALNIRPYDTVLDIHA--LKLVK 224
G V+A LDIH LKL++
Sbjct: 273 KN-----TGK----VVA---------LDIHEHKLKLIE 292
|
Length = 444 |
| >gnl|CDD|233025 TIGR00563, rsmB, ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 1e-06
Identities = 42/180 (23%), Positives = 64/180 (35%), Gaps = 51/180 (28%)
Query: 152 DGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPY 211
D ++ L + +T+LD CAAPGGKT L+ A V+AL+I
Sbjct: 224 DASAQWVATWLAPQNEETILDACAAPGGKTTHILEL-------APQAQ---VVALDI--- 270
Query: 212 DTVLDIHALKLVKVGGSVVYSTCSLSPIQND-------------------------GVVH 246
H LK V + T D GV+
Sbjct: 271 ----HEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIR 326
Query: 247 MSLKRIWEETGCEI----EIKHAL-----KLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
W +I E++ + L+K GG++VY+TCS+ P +N + L+
Sbjct: 327 RHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQE 386
|
This protein is also known as sun protein. The reading frame was originally interpreted as two reading frames, fmu and fmv. The recombinant protein from E. coli was shown to methylate only C967 of small subunit (16S) ribosomal RNA and to produce only m5C at that position. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles [Protein synthesis, tRNA and rRNA base modification]. Length = 426 |
| >gnl|CDD|236790 PRK10901, PRK10901, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 39/167 (23%), Positives = 57/167 (34%), Gaps = 85/167 (50%)
Query: 152 DGASLLPVLALNIRPYDTVLDMCAAPGGKT-----------LVAL-----------QTL- 188
D A+ L L + + VLD CAAPGGKT +VAL + L
Sbjct: 230 DAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQ 289
Query: 189 --------------YPDYYCMDGASLLPVLALNIRPYDTVL------------------- 215
P + DG +P+D +L
Sbjct: 290 RLGLKATVIVGDARDPAQWW-DG-----------QPFDRILLDAPCSATGVIRRHPDIKW 337
Query: 216 -----DIHAL------------KLVKVGGSVVYSTCSLSPIQNDGVV 245
DI AL L+K GG+++Y+TCS+ P +N+ +
Sbjct: 338 LRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQI 384
|
Length = 427 |
| >gnl|CDD|183387 PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 9e-05
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 14/63 (22%)
Query: 264 HALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFS 323
HALK GG++VYSTC+L+ +N V LK + + E E PL LF
Sbjct: 230 HALK---PGGTLVYSTCTLNREENQAVCL-WLKETYPD-AVEFE---------PLGDLFP 275
Query: 324 FAN 326
A
Sbjct: 276 GAE 278
|
Length = 470 |
| >gnl|CDD|184896 PRK14903, PRK14903, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 51/223 (22%), Positives = 89/223 (39%), Gaps = 34/223 (15%)
Query: 152 DGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQ------TLYPDYYCMDGASLLP--V 203
+ + ++P+L + + P VLD CAAPGGKT + + + L+
Sbjct: 224 ESSQIVPLL-MELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHA 282
Query: 204 LALNIRPYDTVL-DIHALKLV---KVGGSVVYSTC-SLSPIQNDGVVHMSLKRIWEETGC 258
L + + + D L +V + C SL +N V L+R+ +E
Sbjct: 283 KRLKLSSIEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEV---LRRVNKEDFK 339
Query: 259 EIE------IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLS 312
++ + A KL++ GG ++YSTC+++ +N VV + + + E+ D+
Sbjct: 340 KLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVV-----KRFVYEQKDAEVIDIR 394
Query: 313 QALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFDKIK 355
L F I YG L+ P P Y K+
Sbjct: 395 DKLEE----FEVEGIWDGYGFLMLPD--ETLTPFYVSVLRKMG 431
|
Length = 431 |
| >gnl|CDD|183387 PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 4e-04
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 218 HALKLVKVGGSVVYSTCSLSPIQNDGVVH 246
HALK GG++VYSTC+L+ +N V
Sbjct: 230 HALK---PGGTLVYSTCTLNREENQAVCL 255
|
Length = 470 |
| >gnl|CDD|237856 PRK14901, PRK14901, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 262 IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
++ L+K GG++VY+TC+L P +N+ + L R
Sbjct: 367 LESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLAR 402
|
Length = 434 |
| >gnl|CDD|237857 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 6e-04
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 261 EI-KHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
EI + + +K GG +VYSTC++ +N+ V+ L+
Sbjct: 360 EILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEE 397
|
Length = 444 |
| >gnl|CDD|183387 PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 6e-04
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 144 GVFNYYCMDGASLLPVLAL--NIRPYDTVLDMCAAPGGKT 181
G+F Y + +S+LPV AL + VLDM AAPG KT
Sbjct: 91 GLF--YIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKT 128
|
Length = 470 |
| >gnl|CDD|237856 PRK14901, PRK14901, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 6e-04
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 218 HALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 251
L+K GG++VY+TC+L P +N+ + L R
Sbjct: 369 SLAPLLKPGGTLVYATCTLHPAENEAQIEQFLAR 402
|
Length = 434 |
| >gnl|CDD|237857 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 7e-04
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 219 ALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 251
+ +K GG +VYSTC++ +N+ V+ L+
Sbjct: 365 VAQYLKKGGILVYSTCTIEKEENEEVIEAFLEE 397
|
Length = 444 |
| >gnl|CDD|237856 PRK14901, PRK14901, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 128 PSGDISEFPSPKRGVTGVFNYYCM-DGASLLPVLALNIRPYDTVLDMCAAPGGKT 181
G I + P + G ++ + D ++ L L+ +P + +LD CAAPGGKT
Sbjct: 219 NPGSIRQLPGYEEG------WWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKT 267
|
Length = 434 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 355 | |||
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 100.0 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 100.0 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 100.0 | |
| KOG1122|consensus | 460 | 100.0 | ||
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 100.0 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 100.0 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 100.0 | |
| KOG2198|consensus | 375 | 100.0 | ||
| KOG2360|consensus | 413 | 99.98 | ||
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.41 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.36 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.31 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.2 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.19 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.18 | |
| KOG1540|consensus | 296 | 99.15 | ||
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.14 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.1 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.02 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.02 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.01 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.98 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 98.97 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.95 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.94 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 98.94 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 98.93 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 98.93 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.93 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 98.9 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 98.9 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.87 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.86 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.86 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.83 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.81 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 98.78 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.77 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 98.76 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 98.75 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.75 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.75 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 98.73 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.73 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 98.73 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.73 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.73 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 98.71 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 98.71 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 98.7 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.69 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.67 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.67 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.66 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.64 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.63 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 98.63 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 98.63 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.62 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.61 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.61 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 98.59 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.59 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.58 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.56 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.55 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.55 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 98.54 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.54 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.53 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.53 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 98.51 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 98.51 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.5 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.5 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 98.49 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.48 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 98.48 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 98.47 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.46 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 98.46 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 98.45 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.44 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.43 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.38 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 98.37 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.36 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 98.32 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.31 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.31 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.31 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.31 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.31 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.3 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 98.29 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 98.27 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.26 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.26 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 98.26 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.26 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 98.25 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 98.23 | |
| KOG1270|consensus | 282 | 98.22 | ||
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 98.22 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.21 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.21 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 98.2 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.19 | |
| PLN02476 | 278 | O-methyltransferase | 98.18 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.17 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.15 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 98.14 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.12 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.12 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.11 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.11 | |
| KOG2915|consensus | 314 | 98.1 | ||
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.09 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.07 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.06 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.05 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.04 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.03 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.02 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.01 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.99 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 97.99 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 97.98 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 97.97 | |
| KOG1271|consensus | 227 | 97.97 | ||
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.97 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 97.96 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.94 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.94 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.94 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 97.92 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 97.91 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 97.91 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.91 | |
| KOG2187|consensus | 534 | 97.9 | ||
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 97.9 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.9 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 97.89 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.84 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 97.83 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 97.82 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 97.81 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 97.81 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.8 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.79 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 97.79 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 97.75 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 97.73 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.73 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 97.73 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 97.72 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.72 | |
| KOG2904|consensus | 328 | 97.71 | ||
| PRK01581 | 374 | speE spermidine synthase; Validated | 97.65 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.65 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 97.64 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 97.64 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 97.62 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.6 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 97.56 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.54 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.52 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 97.51 | |
| KOG1099|consensus | 294 | 97.48 | ||
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 97.48 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.47 | |
| KOG1596|consensus | 317 | 97.45 | ||
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.43 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.41 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.4 | |
| KOG1541|consensus | 270 | 97.39 | ||
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.34 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.32 | |
| KOG1661|consensus | 237 | 97.32 | ||
| KOG4589|consensus | 232 | 97.3 | ||
| KOG2899|consensus | 288 | 97.29 | ||
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.27 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 97.25 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 97.24 | |
| PLN02366 | 308 | spermidine synthase | 97.15 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 97.12 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.11 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.1 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.07 | |
| KOG1663|consensus | 237 | 97.07 | ||
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.03 | |
| KOG1098|consensus | 780 | 97.02 | ||
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 96.99 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 96.94 | |
| KOG2361|consensus | 264 | 96.92 | ||
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 96.75 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 96.75 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 96.73 | |
| KOG0820|consensus | 315 | 96.62 | ||
| PLN02823 | 336 | spermine synthase | 96.61 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 96.55 | |
| KOG1975|consensus | 389 | 96.44 | ||
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 96.39 | |
| KOG4300|consensus | 252 | 96.34 | ||
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 96.33 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 96.26 | |
| KOG2730|consensus | 263 | 96.24 | ||
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 96.21 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 96.01 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 95.99 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 95.9 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 95.7 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 95.5 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 95.47 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 95.45 | |
| KOG2671|consensus | 421 | 95.4 | ||
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 95.39 | |
| KOG3010|consensus | 261 | 95.36 | ||
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 95.23 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 95.19 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 95.13 | |
| KOG1499|consensus | 346 | 95.07 | ||
| KOG1500|consensus | 517 | 95.02 | ||
| KOG3420|consensus | 185 | 94.75 | ||
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.74 | |
| KOG0024|consensus | 354 | 94.64 | ||
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 94.33 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 94.22 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 94.16 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 94.12 | |
| KOG2078|consensus | 495 | 93.88 | ||
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 93.81 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 93.78 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 93.65 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 93.63 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 93.51 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 93.33 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 92.59 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 92.26 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 92.15 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 91.99 | |
| KOG1253|consensus | 525 | 91.82 | ||
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 91.62 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 91.39 | |
| KOG3115|consensus | 249 | 91.1 | ||
| PRK11524 | 284 | putative methyltransferase; Provisional | 90.63 | |
| KOG3178|consensus | 342 | 90.21 | ||
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 89.57 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 89.53 | |
| KOG3987|consensus | 288 | 89.08 | ||
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 89.07 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 88.87 | |
| KOG3191|consensus | 209 | 88.81 | ||
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 88.3 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 88.01 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 87.59 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 87.07 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 85.79 | |
| PRK13699 | 227 | putative methylase; Provisional | 85.28 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 85.01 | |
| KOG2782|consensus | 303 | 84.34 | ||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 83.75 | |
| KOG1197|consensus | 336 | 83.12 | ||
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 83.06 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 82.88 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 82.22 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 81.64 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 80.52 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 80.32 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 80.26 |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-50 Score=398.58 Aligned_cols=250 Identities=28% Similarity=0.352 Sum_probs=193.4
Q ss_pred CCCcceecccCCCChhhhhhh-ccccccCCCCCcceeeCCCcCCCCCccceeEecCCCCcccCCCCCCCCcceeeEEEec
Q psy7769 74 GLHDFIPATQLKGMEGFITDA-DYMDYYRPSPEVDFKVVPETELHISPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMD 152 (355)
Q Consensus 74 ~l~~~~rvn~lk~~~~~i~e~-~~~~~~~~~~~~~~~v~~~~~~~~p~~l~~~~~~~~~~~~~p~~~~g~~~~~~~~~QD 152 (355)
.++.++|+|++|...+.+.+. ....... . ..+..+..+.+ ...+.+...|.|+.|. ||+||
T Consensus 81 ~~~~~~Rvn~lk~~~~~~~~~l~~~~~~~---------~--~~~~~~~~~~i--~~~~~~~~~~~~~~G~-----~~vQd 142 (355)
T COG0144 81 PPPRSLRVNTLKADVEELLEALEEAGVLD---------E--KPWVLDEVLRI--EASGPIGRLPEFAEGL-----IYVQD 142 (355)
T ss_pred CCCeeEEEcCccCCHHHHHHHHhhccccc---------c--cCCccccEEEe--cCCCCcccChhhhceE-----EEEcC
Confidence 377899999999998887764 1111110 0 11123333443 2445777788889887 99999
Q ss_pred hhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCC-Cc-EEEEcCCchhh--HHhhccccccccCcceEEEEEec--
Q psy7769 153 GASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYP-DY-YCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVG-- 226 (355)
Q Consensus 153 ~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~-g~-V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~D-- 226 (355)
++||+++.+|+|+||++||||||||||||+|||+++.+ |. |+|+|++++|+ +++|++| +|..|+.+++.|
T Consensus 143 ~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~R----lG~~nv~~~~~d~~ 218 (355)
T COG0144 143 EASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKR----LGVRNVIVVNKDAR 218 (355)
T ss_pred HHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHH----cCCCceEEEecccc
Confidence 99999999999999999999999999999999998854 44 59999999999 9999995 577776665544
Q ss_pred -------------ceeeecccCCCCCccCCc--cc--cchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCH
Q psy7769 227 -------------GSVVYSTCSLSPIQNDGV--VH--MSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQND 288 (355)
Q Consensus 227 -------------a~~lDaPCSgsG~t~~~~--l~--~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE 288 (355)
..+|||||||+| +.+++ ++ |+++++.+++.+| +||.+|+++|||||+|||||||++++|||
T Consensus 219 ~~~~~~~~~~~fD~iLlDaPCSg~G-~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE 297 (355)
T COG0144 219 RLAELLPGGEKFDRILLDAPCSGTG-VIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENE 297 (355)
T ss_pred cccccccccCcCcEEEECCCCCCCc-ccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCH
Confidence 445999999999 77777 55 6789999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHhhhhccCceEEEecccccccccccccccccCCCccEEEEecCCCCCCCceEEEEEEEcC
Q psy7769 289 GVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFDKIK 355 (355)
Q Consensus 289 ~vV~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~P~~~~~~~gfFia~l~r~~ 355 (355)
+||++||+++ .+++++..... +... +.......+++.+++||.| +++|||+|+|+|.+
T Consensus 298 ~vV~~~L~~~---~~~~~~~~~~~--~~~~---~~~~~~~~~~~~r~~p~~~-~~dGFFia~l~k~~ 355 (355)
T COG0144 298 EVVERFLERH---PDFELEPVRLP--WGPL---FEGLGSELGKTRRLYPHVH-GTDGFFIAKLRKKR 355 (355)
T ss_pred HHHHHHHHhC---CCceeeccccc--cccc---ccccccccCCeEEECCCCC-CCCCeEEEEEEeCC
Confidence 9999999986 33333333222 1111 0110012367899999998 77899999999974
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-49 Score=377.46 Aligned_cols=247 Identities=27% Similarity=0.319 Sum_probs=193.2
Q ss_pred CCCcceecccCCCChhhhhhh-ccccccCCCCCcceeeCCCcCCCCCccceeEecCCCCcccCCCCCCCCcceeeEEEec
Q psy7769 74 GLHDFIPATQLKGMEGFITDA-DYMDYYRPSPEVDFKVVPETELHISPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMD 152 (355)
Q Consensus 74 ~l~~~~rvn~lk~~~~~i~e~-~~~~~~~~~~~~~~~v~~~~~~~~p~~l~~~~~~~~~~~~~p~~~~g~~~~~~~~~QD 152 (355)
..+.++|+|++|..++.+.+. +.. .+.+ +.....|+.+.+.....+++..+|.|+.|. +|+||
T Consensus 8 ~~~~~iRvN~~k~~~~~~~~~L~~~-------g~~~----~~~~~~~~~~~~~~~~~~~i~~l~~~~~G~-----~~vQd 71 (283)
T PF01189_consen 8 PPPVTIRVNTLKISREELLEELEEE-------GIQL----EPIPRSPDALRVIGKSPYSICSLPEFKNGL-----FYVQD 71 (283)
T ss_dssp --GEEEEE-TTTSSHHHHHHHHHHT-------THEE----EEETSTTCEEEEEEECSSCGGGSHHHHTTS-----EEEHH
T ss_pred CCCeEEEECcCcCCHHHHHHHHhhc-------ccce----EEcccccchhccccccccchhhchhhhCCc-----EEecc
Confidence 367899999999998877754 111 1111 122345666444444567888999999997 99999
Q ss_pred hhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEec---
Q psy7769 153 GASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVG--- 226 (355)
Q Consensus 153 ~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~D--- 226 (355)
++|++++.+|+|++|+.||||||||||||+|+|+++. +|.|+|+|++..|+ ++.|++| .|..++.++..|
T Consensus 72 ~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r----~g~~~v~~~~~D~~~ 147 (283)
T PF01189_consen 72 ESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKR----LGVFNVIVINADARK 147 (283)
T ss_dssp HHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHH----TT-SSEEEEESHHHH
T ss_pred cccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHh----cCCceEEEEeecccc
Confidence 9999999999999999999999999999999999885 69999999999999 9999994 577778777544
Q ss_pred -----------ceeeecccCCCCCccCCc--cc--cchHHHHhhhhHH-HHHHHHHhhc----cCCcEEEEEeCCCCCCC
Q psy7769 227 -----------GSVVYSTCSLSPIQNDGV--VH--MSLKRIWEETGCE-IEIKHALKLV----KVGGSVVYSTCSLSPIQ 286 (355)
Q Consensus 227 -----------a~~lDaPCSgsG~t~~~~--l~--~~~~~l~~l~~lQ-~lL~~A~~~L----kpGG~lVYsTCSl~~~E 286 (355)
...+||||||+| +.+++ ++ |+++++..++.+| +||++|++++ ||||+|||||||++++|
T Consensus 148 ~~~~~~~~~fd~VlvDaPCSg~G-~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eE 226 (283)
T PF01189_consen 148 LDPKKPESKFDRVLVDAPCSGLG-TIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEE 226 (283)
T ss_dssp HHHHHHTTTEEEEEEECSCCCGG-GTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGG
T ss_pred ccccccccccchhhcCCCccchh-hhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHH
Confidence 345999999999 55555 55 5688999999999 9999999999 99999999999999999
Q ss_pred CHHHHHHHHHhhhhccCceEEEeccc--ccccccccccccccCCCccEEEEecCCCCCCCceEEEEEE
Q psy7769 287 NDGVVHMSLKRIWEETGCEIEIKDLS--QALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFD 352 (355)
Q Consensus 287 NE~vV~~~L~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~g~~~~P~~~~~~~gfFia~l~ 352 (355)
||+||++||++++ + ++++++. ....++.. + +. ...+.+++||.+ +++|||+|+||
T Consensus 227 NE~vV~~fl~~~~---~--~~l~~~~~~~~~~~~~~---~-~~-~~~~~r~~P~~~-~~dGFFiA~lr 283 (283)
T PF01189_consen 227 NEEVVEKFLKRHP---D--FELVPIPLPEPPPGFKS---Y-PI-GEGCLRILPHRH-GTDGFFIAKLR 283 (283)
T ss_dssp THHHHHHHHHHST---S--EEEECCESSTCEEESSG---G-CT-GGGSEEESTTTS-SSSSEEEEEEE
T ss_pred HHHHHHHHHHhCC---C--cEEEecccccccccccc---c-cC-CCCEEEeCCCCC-CCCCEEEEEeC
Confidence 9999999999862 3 4444443 22211111 1 12 267899999998 78999999997
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-48 Score=390.87 Aligned_cols=250 Identities=21% Similarity=0.189 Sum_probs=191.7
Q ss_pred CCcceecccCCCChhhhhhhccccccCCCCCcceeeCCCcCCCCCccceeEec--CCCCcccCCCCCCCCcceeeEEEec
Q psy7769 75 LHDFIPATQLKGMEGFITDADYMDYYRPSPEVDFKVVPETELHISPYLQAFSF--PSGDISEFPSPKRGVTGVFNYYCMD 152 (355)
Q Consensus 75 l~~~~rvn~lk~~~~~i~e~~~~~~~~~~~~~~~~v~~~~~~~~p~~l~~~~~--~~~~~~~~p~~~~g~~~~~~~~~QD 152 (355)
.+.++|||++|...+-+.+. +. ..++.+ ++.++.|..+.+... ....+...|.+..|. ||+||
T Consensus 33 ~~~~lRvN~lK~~~~~~~~~-----L~-~~g~~~----~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~G~-----~yvQd 97 (470)
T PRK11933 33 LRRSIRVNTLKISVADFLQL-----MA-PYGWTL----TPIPWCEEGFWIERDDEDALPLGNTAEHLSGL-----FYIQE 97 (470)
T ss_pred CCeEEEEcCCcCCHHHHHHH-----HH-hCCCce----eECCCCCceEEEecCccccCCcccChHHHCCc-----EEEEC
Confidence 67899999999887755542 10 011111 234556666554211 012366778888886 99999
Q ss_pred hhcHHHHHhh--CCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc
Q psy7769 153 GASLLPVLAL--NIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG 227 (355)
Q Consensus 153 ~aS~l~~~~L--~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da 227 (355)
+|||+++.+| +++||++||||||||||||+|||++++ .|.|+|+|++++|+ +++|++| .|+.|+.+++.|+
T Consensus 98 ~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r----~G~~nv~v~~~D~ 173 (470)
T PRK11933 98 ASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISR----CGVSNVALTHFDG 173 (470)
T ss_pred HHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH----cCCCeEEEEeCch
Confidence 9999999999 899999999999999999999999874 59999999999999 9999994 5777887776664
Q ss_pred -------------eeeecccCCCCCccCCc--c--ccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHH
Q psy7769 228 -------------SVVYSTCSLSPIQNDGV--V--HMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDG 289 (355)
Q Consensus 228 -------------~~lDaPCSgsG~t~~~~--l--~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~ 289 (355)
..|||||||+| +.+++ + .|+++++..++.+| +||.+|+++|||||+|||||||++++|||+
T Consensus 174 ~~~~~~~~~~fD~ILvDaPCSG~G-~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~ 252 (470)
T PRK11933 174 RVFGAALPETFDAILLDAPCSGEG-TVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQA 252 (470)
T ss_pred hhhhhhchhhcCeEEEcCCCCCCc-ccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHH
Confidence 34999999999 56666 3 48999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHhhhhccCceEEEecccccccccccccccccCCCccEEEEecCCCCCCCceEEEEEEEc
Q psy7769 290 VVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFDKI 354 (355)
Q Consensus 290 vV~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~P~~~~~~~gfFia~l~r~ 354 (355)
||++||++++ + .+++.++...+.+... ... ...+.|++||.+ +++|||+|+|+|.
T Consensus 253 vV~~~L~~~~---~-~~~~~~~~~~~~~~~~----~~~-~~~~~r~~P~~~-~~dGfFiA~lrk~ 307 (470)
T PRK11933 253 VCLWLKETYP---D-AVEFEPLGDLFPGAEK----ALT-EEGFLHVFPQIY-DSEGFFVARLRKT 307 (470)
T ss_pred HHHHHHHHCC---C-cEEecccccccccccc----ccC-CCCeEEECCCCC-CCcceeeEEEEec
Confidence 9999999863 1 1333433221111110 001 133578999997 6789999999985
|
|
| >KOG1122|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=366.33 Aligned_cols=220 Identities=26% Similarity=0.347 Sum_probs=177.7
Q ss_pred ccceeEecCCCCcccCCCCCCCCcceeeEEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcC
Q psy7769 120 PYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGA 198 (355)
Q Consensus 120 ~~l~~~~~~~~~~~~~p~~~~g~~~~~~~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~ 198 (355)
-.+.++. ....+..+|.+..|. |.+|+++|.+++++|+||||++||||||||||||+|||.++ ++|.|+|+|.
T Consensus 201 vgl~v~~-s~vpigat~e~lag~-----~~LQ~~sS~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~ 274 (460)
T KOG1122|consen 201 VGLVVFD-SVVPIGATPEYLAGH-----YMLQNASSFLPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDS 274 (460)
T ss_pred ceEEEec-CccccCCchhhcccc-----eeeccCcccceeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEeccc
Confidence 3455542 233455677777775 88999999999999999999999999999999999999987 5699999999
Q ss_pred Cchhh--HHhhccccccccCcceEEEEEecce--------------eeecccCCCCCccCCc-cccc--hHHHHhhhhHH
Q psy7769 199 SLLPV--LALNIRPYDTVLDIHALKLVKVGGS--------------VVYSTCSLSPIQNDGV-VHMS--LKRIWEETGCE 259 (355)
Q Consensus 199 s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~--------------~lDaPCSgsG~t~~~~-l~~~--~~~l~~l~~lQ 259 (355)
+..|+ +..|+.| +|+.|..+++.|+. ++||||||+|+.++.. ++|. ...+.++..+|
T Consensus 275 n~~r~~~l~~n~~r----lGv~ntiv~n~D~~ef~~~~~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQ 350 (460)
T KOG1122|consen 275 NENRLKSLKANLHR----LGVTNTIVSNYDGREFPEKEFPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQ 350 (460)
T ss_pred chHHHHHHHHHHHH----hCCCceEEEccCcccccccccCcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHH
Confidence 99999 9999994 57777777777763 3999999999766666 7754 46788999999
Q ss_pred -HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceEEEecccccccccccccccccCCCccEEEEecC
Q psy7769 260 -IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQPH 338 (355)
Q Consensus 260 -~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~P~ 338 (355)
+||.+|..++++||+|||||||+.++|||+||+++|.+++ ..++.+..+..+.++.-....|+++. +...|++||
T Consensus 351 r~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p---~~kL~p~~~~iG~~G~~~~~~~~psl-~~~~r~yPh 426 (460)
T KOG1122|consen 351 RELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKRP---EVKLVPTGLDIGGEGRFRGGRFHPSL-KLTRRFYPH 426 (460)
T ss_pred HHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhCC---ceEeccccccCCCCCcccCcccCcch-hheeeecCc
Confidence 9999999999999999999999999999999999999873 33333333333333311223566664 677889999
Q ss_pred CCCCCCceEEEEEEEc
Q psy7769 339 LPSNFGPMYFCKFDKI 354 (355)
Q Consensus 339 ~~~~~~gfFia~l~r~ 354 (355)
.| +++|||+|||+|.
T Consensus 427 ~h-nmdgffvaKl~k~ 441 (460)
T KOG1122|consen 427 VH-NMDGFFVAKLKKA 441 (460)
T ss_pred cc-CCchHHHHHHHhh
Confidence 98 9999999999874
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=336.25 Aligned_cols=243 Identities=23% Similarity=0.260 Sum_probs=181.7
Q ss_pred eecccCCCChhhhhhh-ccccccCCCCCcceeeCCCcCCCCCccceeEecCCCCcccCCCCCCCCcceeeEEEechhcHH
Q psy7769 79 IPATQLKGMEGFITDA-DYMDYYRPSPEVDFKVVPETELHISPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLL 157 (355)
Q Consensus 79 ~rvn~lk~~~~~i~e~-~~~~~~~~~~~~~~~v~~~~~~~~p~~l~~~~~~~~~~~~~p~~~~g~~~~~~~~~QD~aS~l 157 (355)
+|||++|...+.+.+. +..+ +.+. +. ..|..+.+. .....+...|.++.|. +|+||++|++
T Consensus 1 ~RvN~lk~~~~~~~~~l~~~~---------~~~~--~~-~~~~~~~~~-~~~~~~~~~~~~~~G~-----~~~qd~~s~~ 62 (264)
T TIGR00446 1 IRVNTLKISVADLLQRLENRG---------VTLI--PW-CEEGFFEVN-ESPLPIGSTPEYLSGL-----YYIQEASSMI 62 (264)
T ss_pred CeecCCCCCHHHHHHHHHhCC---------Ccee--ec-CCCceEEEe-CCCCCcccChhHhCCe-----EEEECHHHHH
Confidence 5899999988876553 1111 1111 11 133333332 1223477888888886 9999999999
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEec--------
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVG-------- 226 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~D-------- 226 (355)
++.+|++++|++|||+|||||+||+++++.++ .|.|+|+|+++.|+ +++|+++ .+..++.++..|
T Consensus 63 ~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~----~g~~~v~~~~~D~~~~~~~~ 138 (264)
T TIGR00446 63 PPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINR----CGVLNVAVTNFDGRVFGAAV 138 (264)
T ss_pred HHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHH----cCCCcEEEecCCHHHhhhhc
Confidence 99999999999999999999999999998774 48999999999999 9999984 355567666555
Q ss_pred ----ceeeecccCCCCCccCCc--c--ccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 227 ----GSVVYSTCSLSPIQNDGV--V--HMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 227 ----a~~lDaPCSgsG~t~~~~--l--~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
...+||||||+| +.+++ + .|+++.+..++.+| ++|++|+++|||||+|||||||++++|||.||++||++
T Consensus 139 ~~fD~Vl~D~Pcsg~G-~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~ 217 (264)
T TIGR00446 139 PKFDAILLDAPCSGEG-VIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEK 217 (264)
T ss_pred cCCCEEEEcCCCCCCc-ccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHh
Confidence 344999999999 55555 4 37889999999999 99999999999999999999999999999999999998
Q ss_pred hhhccCceEEEecccccccccccccccccCCCccEEEEecCCCCCCCceEEEEEEE
Q psy7769 298 IWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFDK 353 (355)
Q Consensus 298 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~P~~~~~~~gfFia~l~r 353 (355)
++ +..+.+ .... ... ..+. .......+.|++||.| +++|||+|+|+|
T Consensus 218 ~~---~~~~~~-~~~~--~~~-~~~~-~~~~~~~~~r~~P~~~-~~dGfF~a~l~k 264 (264)
T TIGR00446 218 RP---DVVEEL-PKGD--EFF-GANK-GKEEVKGALRVFPQIY-DCEGFFVAKLRK 264 (264)
T ss_pred CC---CcEEec-cCCc--ccc-cccc-cccccCCeEEECCCCC-CCCcEEEEEEEC
Confidence 63 222221 1111 000 0000 0001145789999998 789999999986
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-42 Score=344.93 Aligned_cols=249 Identities=18% Similarity=0.256 Sum_probs=191.0
Q ss_pred CCCChhhhhhh--ccc---------cccCCCCCcceeeCCC-------------------cCCCCCccceeEecCCCCcc
Q psy7769 84 LKGMEGFITDA--DYM---------DYYRPSPEVDFKVVPE-------------------TELHISPYLQAFSFPSGDIS 133 (355)
Q Consensus 84 lk~~~~~i~e~--~~~---------~~~~~~~~~~~~v~~~-------------------~~~~~p~~l~~~~~~~~~~~ 133 (355)
..+.|+|+.+. +.| .+++.++++++|||+- +.+++|..+.+. ...+.+.
T Consensus 131 ~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~RvN~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~~~~~~~ 209 (431)
T PRK14903 131 KYSHPKWLVNYWRSFLPEEAVLRIMEWNQEPLPTMLRVNSLAITREEVIKILAEEGTEAVPGKHSPFSLIVR-KLGVNMN 209 (431)
T ss_pred hhcCcHHHHHHHHHHcCHHHHHHHHHHhcCCCCeeEEeeCCcCCHHHHHHHHHHCCCeeEECCCCCceEEEc-CCCCCcc
Confidence 45778888775 333 3578889999999861 123456555442 1134567
Q ss_pred cCCCCCCCCcceeeEEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhccc
Q psy7769 134 EFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRP 210 (355)
Q Consensus 134 ~~p~~~~g~~~~~~~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r 210 (355)
..+.++.|. +++||.+|++++.++++++|++|||+|||||+||+++++.+ +.|.|+|+|+++.|+ +++|+++
T Consensus 210 ~~~~~~~G~-----~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r 284 (431)
T PRK14903 210 DSRVIKDGL-----ATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKR 284 (431)
T ss_pred cChHHHCCe-----EEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 778888886 99999999999999999999999999999999999999987 458999999999999 9999984
Q ss_pred cccccCcceEEEEEecc-------------eeeecccCCCCCccCCc--cc--cchHHHHhhhhHH-HHHHHHHhhccCC
Q psy7769 211 YDTVLDIHALKLVKVGG-------------SVVYSTCSLSPIQNDGV--VH--MSLKRIWEETGCE-IEIKHALKLVKVG 272 (355)
Q Consensus 211 ~~~~~g~~~v~~~~~Da-------------~~lDaPCSgsG~t~~~~--l~--~~~~~l~~l~~lQ-~lL~~A~~~LkpG 272 (355)
.|..++.++..|+ ..+||||||+| +.+++ ++ |+++++..+..+| ++|.+++++||||
T Consensus 285 ----~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G-~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG 359 (431)
T PRK14903 285 ----LKLSSIEIKIADAERLTEYVQDTFDRILVDAPCTSLG-TARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKG 359 (431)
T ss_pred ----cCCCeEEEEECchhhhhhhhhccCCEEEECCCCCCCc-cccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3555666665554 44999999999 55555 44 6788899999999 9999999999999
Q ss_pred cEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceEEEecccccccccccccccccCCCccEEEEecCCCCCCCceEEEEEE
Q psy7769 273 GSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFD 352 (355)
Q Consensus 273 G~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~P~~~~~~~gfFia~l~ 352 (355)
|+|||||||++++|||+||++||++++ + +++.++......+... .+ . ...|++++|+. +++|||+|+|+
T Consensus 360 G~LvYsTCs~~~eEne~vv~~fl~~~~---~--~~~~~~~~~~~~~~~~-~~--~-~~~~~~~~P~~--~~dGFf~a~L~ 428 (431)
T PRK14903 360 GILLYSTCTVTKEENTEVVKRFVYEQK---D--AEVIDIRDKLEEFEVE-GI--W-DGYGFLMLPDE--TLTPFYVSVLR 428 (431)
T ss_pred CEEEEEECCCChhhCHHHHHHHHHhCC---C--cEEecccccccccccc-cc--c-CCCcEEECcCC--CCCcEEEEEEE
Confidence 999999999999999999999998763 3 3444432111110000 00 0 13468999985 67899999999
Q ss_pred Ec
Q psy7769 353 KI 354 (355)
Q Consensus 353 r~ 354 (355)
|.
T Consensus 429 k~ 430 (431)
T PRK14903 429 KM 430 (431)
T ss_pred eC
Confidence 86
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=340.62 Aligned_cols=242 Identities=17% Similarity=0.176 Sum_probs=188.6
Q ss_pred CCCChhhhhhh--ccc--------cccCCCCCcceeeCCC-------------------cCCCCCccceeEecCCCCccc
Q psy7769 84 LKGMEGFITDA--DYM--------DYYRPSPEVDFKVVPE-------------------TELHISPYLQAFSFPSGDISE 134 (355)
Q Consensus 84 lk~~~~~i~e~--~~~--------~~~~~~~~~~~~v~~~-------------------~~~~~p~~l~~~~~~~~~~~~ 134 (355)
..+.|+|+.+. ..| .+++.++++++|||+- +..++|..+.+. ....+..
T Consensus 134 ~~s~P~wl~~~~~~~~~~~~~~~l~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~--~~~~~~~ 211 (426)
T TIGR00563 134 RYLHPEWLVKRLQKAYPGQWQSICEANNQRPPMWLRINRTKHSRDEWLALLAEAGMKGFPHDLAPDAVRLE--TPAAVHA 211 (426)
T ss_pred HcCCCHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEEcCCcCCHHHHHHHHHhcCCceeeCCCCCCeEEEC--CCCCccc
Confidence 46789998874 222 3568889999999862 112456555542 3335778
Q ss_pred CCCCCCCCcceeeEEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccc
Q psy7769 135 FPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYD 212 (355)
Q Consensus 135 ~p~~~~g~~~~~~~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~ 212 (355)
.+.++.|. |++||++|++++..|++++|++|||+|||||+||+++++.++.|+|+|+|+++.|+ +++|++++
T Consensus 212 ~~~~~~G~-----~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~- 285 (426)
T TIGR00563 212 LPGFEEGW-----VTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRL- 285 (426)
T ss_pred CchhhCCe-----EEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHc-
Confidence 88888886 99999999999999999999999999999999999999987678999999999999 89999843
Q ss_pred cccCcc-eEEEEE--------------ecceeeecccCCCCCccCCc--cc--cchHHHHhhhhHH-HHHHHHHhhccCC
Q psy7769 213 TVLDIH-ALKLVK--------------VGGSVVYSTCSLSPIQNDGV--VH--MSLKRIWEETGCE-IEIKHALKLVKVG 272 (355)
Q Consensus 213 ~~~g~~-~v~~~~--------------~Da~~lDaPCSgsG~t~~~~--l~--~~~~~l~~l~~lQ-~lL~~A~~~LkpG 272 (355)
|.. .+.+.. +|...+||||||+| +.+++ ++ |+++++.+++.+| ++|.+|+++||||
T Consensus 286 ---g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G-~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkpg 361 (426)
T TIGR00563 286 ---GLTIKAETKDGDGRGPSQWAENEQFDRILLDAPCSATG-VIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTG 361 (426)
T ss_pred ---CCCeEEEEeccccccccccccccccCEEEEcCCCCCCc-ccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 332 222222 45556999999999 55554 55 5788899999999 9999999999999
Q ss_pred cEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceEEEecccccccccccccccccCCCccEEEEecCCCCCCCceEEEEEE
Q psy7769 273 GSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFD 352 (355)
Q Consensus 273 G~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~P~~~~~~~gfFia~l~ 352 (355)
|+|||||||++++|||.||++||++++ ++.++ .. +. .+.....+++++|+.+ +++|||+|+|+
T Consensus 362 G~lvystcs~~~~Ene~~v~~~l~~~~---~~~~~--~~-----~~------~~~~~~~~~~~~P~~~-~~dGff~a~l~ 424 (426)
T TIGR00563 362 GTLVYATCSVLPEENSEQIKAFLQEHP---DFPFE--KT-----GT------PEQVRDGGLQILPHAE-EGDGFFYAKLI 424 (426)
T ss_pred cEEEEEeCCCChhhCHHHHHHHHHhCC---CCeec--cC-----CC------ccccCCCcEEECCCCC-CCCCeEEEEEE
Confidence 999999999999999999999999863 32221 11 10 0111134688999997 78999999999
Q ss_pred Ec
Q psy7769 353 KI 354 (355)
Q Consensus 353 r~ 354 (355)
|.
T Consensus 425 k~ 426 (426)
T TIGR00563 425 KK 426 (426)
T ss_pred eC
Confidence 84
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=342.18 Aligned_cols=233 Identities=20% Similarity=0.329 Sum_probs=188.9
Q ss_pred CCChhhhhhh--ccc---------cccCCCCCcceeeCCC-------------------cCCCCCccceeEecCCCCccc
Q psy7769 85 KGMEGFITDA--DYM---------DYYRPSPEVDFKVVPE-------------------TELHISPYLQAFSFPSGDISE 134 (355)
Q Consensus 85 k~~~~~i~e~--~~~---------~~~~~~~~~~~~v~~~-------------------~~~~~p~~l~~~~~~~~~~~~ 134 (355)
.+.|+|+.+. ..| .+++.++++++|+|+- ..+++|..+.+. ...+++..
T Consensus 147 ~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~~~~~~~~ 225 (434)
T PRK14901 147 HSFPDWLVKLWLEWLGLEEAEQLCKWFNQPPSLDLRINPLRTSLEEVQAALAEAGITATPIPGLPQGLRLT-GNPGSIRQ 225 (434)
T ss_pred hCCcHHHHHHHHHHhCHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHCCCceEECCCCCCeEEec-CCCCcccc
Confidence 4789998876 333 3678899999999861 124567777663 22245788
Q ss_pred CCCCCCCCcceeeEEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhcccc
Q psy7769 135 FPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPY 211 (355)
Q Consensus 135 ~p~~~~g~~~~~~~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~ 211 (355)
.|.|+.|. +++||++|++++.+|++++|++|||+|||||+||+++++.++ .|+|+|+|+++.|+ +++|+++
T Consensus 226 ~~~f~~g~-----~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r- 299 (434)
T PRK14901 226 LPGYEEGW-----WTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQR- 299 (434)
T ss_pred ChHHhCCe-----EEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHH-
Confidence 88898886 999999999999999999999999999999999999998764 58999999999999 9999984
Q ss_pred ccccCcceEEEEEec----------------ceeeecccCCCCCccCCc--cc--cchHHHHhhhhHH-HHHHHHHhhcc
Q psy7769 212 DTVLDIHALKLVKVG----------------GSVVYSTCSLSPIQNDGV--VH--MSLKRIWEETGCE-IEIKHALKLVK 270 (355)
Q Consensus 212 ~~~~g~~~v~~~~~D----------------a~~lDaPCSgsG~t~~~~--l~--~~~~~l~~l~~lQ-~lL~~A~~~Lk 270 (355)
.|..++.+++.| ...+|+||||+| +.+++ ++ +++.++..+..+| ++|.+|+++||
T Consensus 300 ---~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G-~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk 375 (434)
T PRK14901 300 ---LGLKSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLG-TLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLK 375 (434)
T ss_pred ---cCCCeEEEEeCChhhcccccccccccCCEEEEeCCCCccc-ccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 466566665544 344999999999 55555 55 4678899999999 99999999999
Q ss_pred CCcEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceEEEecccccccccccccccccCCCccEEEEecCCCCCCCceEEEE
Q psy7769 271 VGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCK 350 (355)
Q Consensus 271 pGG~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~P~~~~~~~gfFia~ 350 (355)
|||+|||||||++++|||.||.+||++++ + +++... +.+++||.| +++|||+|+
T Consensus 376 pgG~lvystcsi~~~Ene~~v~~~l~~~~---~--~~~~~~--------------------~~~~~P~~~-~~dGfF~a~ 429 (434)
T PRK14901 376 PGGTLVYATCTLHPAENEAQIEQFLARHP---D--WKLEPP--------------------KQKIWPHRQ-DGDGFFMAV 429 (434)
T ss_pred CCCEEEEEeCCCChhhHHHHHHHHHHhCC---C--cEecCC--------------------CCccCCCCC-CCCcEEEEE
Confidence 99999999999999999999999999762 2 322110 112899997 789999999
Q ss_pred EEEc
Q psy7769 351 FDKI 354 (355)
Q Consensus 351 l~r~ 354 (355)
|+|.
T Consensus 430 l~k~ 433 (434)
T PRK14901 430 LRKK 433 (434)
T ss_pred EEeC
Confidence 9986
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=321.28 Aligned_cols=237 Identities=17% Similarity=0.200 Sum_probs=185.8
Q ss_pred CCChhhhhhh--ccc--------cccCCCCCcceeeCCC-------------------cCCCCCccceeEecCCCCcccC
Q psy7769 85 KGMEGFITDA--DYM--------DYYRPSPEVDFKVVPE-------------------TELHISPYLQAFSFPSGDISEF 135 (355)
Q Consensus 85 k~~~~~i~e~--~~~--------~~~~~~~~~~~~v~~~-------------------~~~~~p~~l~~~~~~~~~~~~~ 135 (355)
.+.|+|+.+. +.| .+++.++++++|+|+- +.+++|..+.+. ....+...
T Consensus 141 ~s~P~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 218 (427)
T PRK10901 141 YNHPSWLIKRLKKAYPEQWQAILAANNQRPPMWLRVNRRHHSRDAYLALLAEAGIEAFPHAVGPDAIRLE--TPVPVHQL 218 (427)
T ss_pred hcCCHHHHHHHHHHhHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHhCCCceeecCCCCCeEEEC--CCCCcccC
Confidence 5678887765 222 3678888888888861 123566666552 22357777
Q ss_pred CCCCCCCcceeeEEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcccccc
Q psy7769 136 PSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDT 213 (355)
Q Consensus 136 p~~~~g~~~~~~~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~ 213 (355)
+.++.|. +++||.+|++++.+|++++|++|||+|||||+||+++++.+..++|+|+|+++.|+ +++|++++
T Consensus 219 ~~~~~G~-----~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~-- 291 (427)
T PRK10901 219 PGFAEGW-----VSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL-- 291 (427)
T ss_pred chhhCce-----EEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc--
Confidence 8888886 99999999999999999999999999999999999999987558999999999999 88898842
Q ss_pred ccCcceEEEEEe--------------cceeeecccCCCCCccCCc--ccc--chHHHHhhhhHH-HHHHHHHhhccCCcE
Q psy7769 214 VLDIHALKLVKV--------------GGSVVYSTCSLSPIQNDGV--VHM--SLKRIWEETGCE-IEIKHALKLVKVGGS 274 (355)
Q Consensus 214 ~~g~~~v~~~~~--------------Da~~lDaPCSgsG~t~~~~--l~~--~~~~l~~l~~lQ-~lL~~A~~~LkpGG~ 274 (355)
|.. +.++.+ |...+|+||||+|+ .+++ ++| ++.++.++..+| ++|.+|+++|||||+
T Consensus 292 --g~~-~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~-~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~ 367 (427)
T PRK10901 292 --GLK-ATVIVGDARDPAQWWDGQPFDRILLDAPCSATGV-IRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGT 367 (427)
T ss_pred --CCC-eEEEEcCcccchhhcccCCCCEEEECCCCCcccc-cccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 332 334433 44459999999994 4444 655 577888899999 999999999999999
Q ss_pred EEEEeCCCCCCCCHHHHHHHHHhhhhccCceEEEecccccccccccccccccCCCccEEEEecCCCCCCCceEEEEEEEc
Q psy7769 275 VVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFDKI 354 (355)
Q Consensus 275 lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~P~~~~~~~gfFia~l~r~ 354 (355)
+||||||++++|||++|.++|++++ + +++++.. . .. ..|.+++||.| +++|||+|+|+|.
T Consensus 368 lvystcs~~~~Ene~~v~~~l~~~~---~--~~~~~~~-----~--------~~-~~~~~~~P~~~-~~dGff~a~l~k~ 427 (427)
T PRK10901 368 LLYATCSILPEENEQQIKAFLARHP---D--AELLDTG-----T--------PQ-QPGRQLLPGEE-DGDGFFYALLIKR 427 (427)
T ss_pred EEEEeCCCChhhCHHHHHHHHHhCC---C--CEEecCC-----C--------CC-CCceEECCCCC-CCCCeEEEEEEEC
Confidence 9999999999999999999998752 3 3333320 0 11 45789999997 7899999999984
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=321.77 Aligned_cols=246 Identities=21% Similarity=0.274 Sum_probs=183.7
Q ss_pred CCChhhhhhh--ccc---------cccCCCCCcceeeCCCc--------------CC----CCCccceeEecCCCCcccC
Q psy7769 85 KGMEGFITDA--DYM---------DYYRPSPEVDFKVVPET--------------EL----HISPYLQAFSFPSGDISEF 135 (355)
Q Consensus 85 k~~~~~i~e~--~~~---------~~~~~~~~~~~~v~~~~--------------~~----~~p~~l~~~~~~~~~~~~~ 135 (355)
.+.|+|+.+. ..| ..++.++++++|+|+-. .. .+| .+.+ . +....+
T Consensus 149 ~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~---~-~~~~~~ 223 (445)
T PRK14904 149 YSHPEWLLERWIARYGEERTEAMLSYNNQAPLFGFRINRLKTTPEKFLAAPADASVTFEKSGLP-NFFL---S-KDFSLF 223 (445)
T ss_pred hCCCHHHHHHHHHHhChHHHHHHHHHhCCCCCceeEeCCCCCCHHHHHHHHHhCCCceEEcCcc-eEEE---e-cccccc
Confidence 5788998775 333 35677888889988611 00 111 1111 1 123334
Q ss_pred -CCCCCCCcceeeEEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhcccc
Q psy7769 136 -PSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPY 211 (355)
Q Consensus 136 -p~~~~g~~~~~~~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~ 211 (355)
|.+..|. +++||++|++++.+|++.+|++|||+|||||+||+++++.++ .++|+|+|+++.|+ +++|+++
T Consensus 224 ~~~~~~G~-----~~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~- 297 (445)
T PRK14904 224 EPFLKLGL-----VSVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASA- 297 (445)
T ss_pred ChHHhCcE-----EEEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH-
Confidence 6677775 899999999999999999999999999999999999998764 48999999999999 8899983
Q ss_pred ccccCcceEEEEEecc-----------eeeecccCCCCCccCCc--cc--cchHHHHhhhhHH-HHHHHHHhhccCCcEE
Q psy7769 212 DTVLDIHALKLVKVGG-----------SVVYSTCSLSPIQNDGV--VH--MSLKRIWEETGCE-IEIKHALKLVKVGGSV 275 (355)
Q Consensus 212 ~~~~g~~~v~~~~~Da-----------~~lDaPCSgsG~t~~~~--l~--~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~l 275 (355)
.|..++.++..|+ ..+|+||||+| +.+++ ++ |+++.+.++..+| ++|.+++++|||||+|
T Consensus 298 ---~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~Pcsg~g-~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~l 373 (445)
T PRK14904 298 ---LGITIIETIEGDARSFSPEEQPDAILLDAPCTGTG-VLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVL 373 (445)
T ss_pred ---hCCCeEEEEeCcccccccCCCCCEEEEcCCCCCcc-hhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEE
Confidence 4556677766554 44999999999 55555 54 5678899999999 9999999999999999
Q ss_pred EEEeCCCCCCCCHHHHHHHHHhhhhccCceEEEecccccccccccccccccCCCccEEEEecCCCCCCCceEEEEEEEc
Q psy7769 276 VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFDKI 354 (355)
Q Consensus 276 VYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~P~~~~~~~gfFia~l~r~ 354 (355)
||+|||++++|||+||++||++++ + +...+....++ ..+...... ..+.+++|+.+.++||||+|+|+|.
T Consensus 374 vystcs~~~~Ene~~v~~~l~~~~---~--~~~~~~~~~l~---~~~~~~~~~-~~~~~~~P~~~~~~dGfF~a~l~k~ 443 (445)
T PRK14904 374 VYATCSIEPEENELQIEAFLQRHP---E--FSAEPSPGSLP---EPFHEVAHP-KGAILTLPGEHEGFDGGFAQRLRKN 443 (445)
T ss_pred EEEeCCCChhhHHHHHHHHHHhCC---C--CEEeccccccc---cccccccCC-CCcEEECCCCCCCCCcEEEEEEEec
Confidence 999999999999999999999763 2 33333221111 111100111 2357899998767899999999986
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=319.58 Aligned_cols=247 Identities=20% Similarity=0.213 Sum_probs=193.0
Q ss_pred CCCChhhhhhh--ccc---------cccCCCCCcceeeCCC-------------------cCCCCCccceeEecCCCCcc
Q psy7769 84 LKGMEGFITDA--DYM---------DYYRPSPEVDFKVVPE-------------------TELHISPYLQAFSFPSGDIS 133 (355)
Q Consensus 84 lk~~~~~i~e~--~~~---------~~~~~~~~~~~~v~~~-------------------~~~~~p~~l~~~~~~~~~~~ 133 (355)
..+.|+|+.+. ..| .+++.++++++|+|+. +.+++|..+.+. .+++.
T Consensus 146 ~~~~P~w~~~~~~~~~g~~~~~~~l~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~---~~~~~ 222 (444)
T PRK14902 146 KYSHPVWLVKRWIDQYGEEKAEKILESLNEPPKASIRVNTLKISVEELIEKLEEEGYEVEESLLSPEALVIE---KGNIA 222 (444)
T ss_pred HhCChHHHHHHHHHHhCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCceeEEcCCCCCeEEEe---CCCcc
Confidence 45789998775 223 3678888999999862 123566666552 35688
Q ss_pred cCCCCCCCCcceeeEEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhccc
Q psy7769 134 EFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRP 210 (355)
Q Consensus 134 ~~p~~~~g~~~~~~~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r 210 (355)
..+.++.|. +++||.+|++++.++++++|++|||+|||||+||++++..+ +.++|+|+|+++.++ +++|+++
T Consensus 223 ~~~~~~~G~-----~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~ 297 (444)
T PRK14902 223 GTDLFKDGL-----ITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKR 297 (444)
T ss_pred cChHHhCce-----EEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 888889886 99999999999999999999999999999999999999876 458999999999999 8899983
Q ss_pred cccccCcceEEEEEecc-------------eeeecccCCCCCccCCc--cc--cchHHHHhhhhHH-HHHHHHHhhccCC
Q psy7769 211 YDTVLDIHALKLVKVGG-------------SVVYSTCSLSPIQNDGV--VH--MSLKRIWEETGCE-IEIKHALKLVKVG 272 (355)
Q Consensus 211 ~~~~~g~~~v~~~~~Da-------------~~lDaPCSgsG~t~~~~--l~--~~~~~l~~l~~lQ-~lL~~A~~~LkpG 272 (355)
.|..++.++++|+ ..+|+||||+| +.+++ ++ +++.++..+..+| ++|.+|+++||||
T Consensus 298 ----~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G-~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 372 (444)
T PRK14902 298 ----LGLTNIETKALDARKVHEKFAEKFDKILVDAPCSGLG-VIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKG 372 (444)
T ss_pred ----cCCCeEEEEeCCcccccchhcccCCEEEEcCCCCCCe-eeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3555566665554 34999999999 44444 44 4677888999999 9999999999999
Q ss_pred cEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceEEEecccccccccccccccccCCCccEEEEecCCCCCCCceEEEEEE
Q psy7769 273 GSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFD 352 (355)
Q Consensus 273 G~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~P~~~~~~~gfFia~l~ 352 (355)
|+|||||||++++|||.||.++|++++ + ++++++....... .. .+.. ..+.|++||.+ +++|||+|+|+
T Consensus 373 G~lvystcs~~~~Ene~vv~~~l~~~~---~--~~~~~~~~~~~~~---~~-~~~~-~~~~r~~P~~~-~~dGfF~a~l~ 441 (444)
T PRK14902 373 GILVYSTCTIEKEENEEVIEAFLEEHP---E--FELVPLQHEKPDE---LV-YEVK-DGYLQILPNDY-GTDGFFIAKLR 441 (444)
T ss_pred CEEEEEcCCCChhhhHHHHHHHHHhCC---C--cEEeccccccccc---cc-cccc-CCeEEECCCCC-CCCCeEEEEEE
Confidence 999999999999999999999998752 2 4445543222111 00 0111 34678999997 78999999999
Q ss_pred Ec
Q psy7769 353 KI 354 (355)
Q Consensus 353 r~ 354 (355)
|.
T Consensus 442 k~ 443 (444)
T PRK14902 442 KK 443 (444)
T ss_pred EC
Confidence 86
|
|
| >KOG2198|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=313.97 Aligned_cols=215 Identities=35% Similarity=0.531 Sum_probs=164.3
Q ss_pred CcccCCCCCCCCcceeeEEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC----CCcEEEEcCCchhh--H
Q psy7769 131 DISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY----PDYYCMDGASLLPV--L 204 (355)
Q Consensus 131 ~~~~~p~~~~g~~~~~~~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~----~g~V~AvD~s~~Rl--l 204 (355)
.+.+|+.+....+++++||.||++|++|+++|+++||++||||||||||||+++.+.+. .|.|+|||++..|+ |
T Consensus 120 ~l~rf~~fl~~e~~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L 199 (375)
T KOG2198|consen 120 PLSRFHGFLKLETGVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNML 199 (375)
T ss_pred chhhcchHhhhhcccccchhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHH
Confidence 36689999999999999999999999999999999999999999999999999998775 36999999999999 7
Q ss_pred HhhccccccccCcceEE---------------------EEEecceeeecccCCCCCccCCc--c--c-cchHHHHhhhhH
Q psy7769 205 ALNIRPYDTVLDIHALK---------------------LVKVGGSVVYSTCSLSPIQNDGV--V--H-MSLKRIWEETGC 258 (355)
Q Consensus 205 ~~~l~r~~~~~g~~~v~---------------------~~~~Da~~lDaPCSgsG~t~~~~--l--~-~~~~~l~~l~~l 258 (355)
.+.++++ ...++. +..+|-.+||+||||.| +.+.. + . |+..+-..+..+
T Consensus 200 ~~q~~~l----~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dg-t~rk~~~i~~~~w~~~~~~~L~~L 274 (375)
T KOG2198|consen 200 VHQLKRL----PSPNLLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDG-TLRKNPNIWKEGWKTQRALGLHAL 274 (375)
T ss_pred HHHHhcc----CCcceeeecccceeccccccccCchhhhhhcceeEEecccCCCc-ccccCchHhhhhhhhhhccCChHH
Confidence 6666642 222222 22334455999999998 66665 2 1 555555678889
Q ss_pred H-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceEEEecccccccccc----c-ccccccCCC--c
Q psy7769 259 E-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLK----S-LFSFANINL--S 330 (355)
Q Consensus 259 Q-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~~l~~~~~~~~----~-~~~~~~~~~--~ 330 (355)
| +||.+++++||+||+|||||||++|.|||+||+++|+.+.+ .++.++.+..++.+. . .+.++...+ .
T Consensus 275 Q~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~L~~~~~----~~~lv~~~~~lp~l~r~~g~t~~~~~~~~~~~~ 350 (375)
T KOG2198|consen 275 QLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEALQKVGG----AVELVDVSGDLPGLKRMFGSTGWKVHDKVLKWF 350 (375)
T ss_pred HHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHHHHHHhcC----cccceeeccccccceecCCCCcceEEecCcccc
Confidence 9 99999999999999999999999999999999999998643 444555433322221 1 112222222 2
Q ss_pred cEEEEecCCCCCCCceEEEEEEEc
Q psy7769 331 YGHLVQPHLPSNFGPMYFCKFDKI 354 (355)
Q Consensus 331 ~g~~~~P~~~~~~~gfFia~l~r~ 354 (355)
.+....|....+++|+|.+++.|.
T Consensus 351 ~~~~~vp~~~~~~~P~~~~~~~~l 374 (375)
T KOG2198|consen 351 TSPLEVPKLVANFGPMYFCEKTRL 374 (375)
T ss_pred cCccccccchhhcCCCchhhhhhc
Confidence 455677877778899999987764
|
|
| >KOG2360|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-32 Score=265.04 Aligned_cols=258 Identities=24% Similarity=0.225 Sum_probs=188.2
Q ss_pred CCCCcceecccCCCChhhhhhh---ccccccCCCCCcceeeCCCcCCCCCccceeEecCCCCcccCCCCCCCCcceeeEE
Q psy7769 73 TGLHDFIPATQLKGMEGFITDA---DYMDYYRPSPEVDFKVVPETELHISPYLQAFSFPSGDISEFPSPKRGVTGVFNYY 149 (355)
Q Consensus 73 ~~l~~~~rvn~lk~~~~~i~e~---~~~~~~~~~~~~~~~v~~~~~~~~p~~l~~~~~~~~~~~~~p~~~~g~~~~~~~~ 149 (355)
..+|+|+|+|++|..-+....- +.++..++..+.-+-+ +++++..|... +...+...+.++.|. +.
T Consensus 128 ~~~pr~vRINtlk~~~~e~~~~L~~e~~~~~~~l~p~~~~~----D~~~~~ll~~~--~~n~i~~~~ly~~g~-----~i 196 (413)
T KOG2360|consen 128 IPLPRYVRINTLKGTTDEALDYLDYEKWKMITELKPDEFYV----DPHVENLIIFP--PSNFIVEHELYKNGK-----FI 196 (413)
T ss_pred CCCceeEEeecccCchhhhhhhhhhhhhhhhhhcCCcceec----cccchhhcccC--CCcceeeccccccCc-----eE
Confidence 4689999999999654433221 1122112211111111 23344433332 344667788899886 99
Q ss_pred EechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEec
Q psy7769 150 CMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVG 226 (355)
Q Consensus 150 ~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~D 226 (355)
+||.+||+|++.|+|.+|..|+|+||+||.||+|+|..++ .|+|+|+|.++.|. ++..+. . .|..+++....|
T Consensus 197 lqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~--~--ag~~~~~~~~~d 272 (413)
T KOG2360|consen 197 LQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLK--I--AGVSIVESVEGD 272 (413)
T ss_pred EechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHH--H--cCCCcccccccc
Confidence 9999999999999999999999999999999999999775 69999999999999 777777 3 466666555655
Q ss_pred cee--------------eecccCCCCCccCCc-cc----cchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCC
Q psy7769 227 GSV--------------VYSTCSLSPIQNDGV-VH----MSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQ 286 (355)
Q Consensus 227 a~~--------------lDaPCSgsG~t~~~~-l~----~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~E 286 (355)
+.. +|++|||+||..|+. +. -.+++++.+..+| .++++|+.+.+. -++||||||++.+|
T Consensus 273 f~~t~~~~~~~~v~~iL~DpscSgSgm~~r~~~~~~~e~~~~~rL~~L~~fq~~~~~hal~fp~~-k~vvystcs~~ree 351 (413)
T KOG2360|consen 273 FLNTATPEKFRDVTYILVDPSCSGSGMVSRQDEDPGAETESPERLENLQSFQIRILKHALTFPNL-KRLVYSTCSLHREE 351 (413)
T ss_pred ccCCCCcccccceeEEEeCCCCCCCccccceeeccCCCcccHHHHHHHHHHHHHHHHHHhcCCch-hheeeecchhhhhh
Confidence 532 999999999877776 22 4678999999999 999999998887 59999999999999
Q ss_pred CHHHHHHHHHhhhhccCceEEEeccc--ccccccccccccccCCCccEEEEecCCCCCCCceEEEEEEEc
Q psy7769 287 NDGVVHMSLKRIWEETGCEIEIKDLS--QALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFDKI 354 (355)
Q Consensus 287 NE~vV~~~L~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~g~~~~P~~~~~~~gfFia~l~r~ 354 (355)
||.||+..|...+ ..+.+.+..+. |..++. . .| +. .+.+.|..|... ..+|||+|.|.|.
T Consensus 352 ne~vv~d~l~~~p--~~~~l~~kK~~p~w~~rg~-~--~~-~~-~e~~lr~~p~~~-~~~gffva~fer~ 413 (413)
T KOG2360|consen 352 NEQVVQEVLQQNP--DAKRLAPKKVLPAWPHRGL-S--TF-SG-AEHCLRASPKST-LTIGFFVALFERV 413 (413)
T ss_pred hhHHHHHHHhhCh--hHhhhchhhcchhhhhcCC-c--cc-cc-cccceecccCCC-CcceEEEEEeecC
Confidence 9999999998742 22334442232 333332 2 23 22 267888999886 6678999998873
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-12 Score=116.28 Aligned_cols=122 Identities=16% Similarity=0.109 Sum_probs=103.0
Q ss_pred hhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-
Q psy7769 153 GASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV- 229 (355)
Q Consensus 153 ~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~- 229 (355)
+-.++....|.|+||++++|++||+|+.|..+|...+.++|+|+|.++.++ +++|.+ + ++.+|++++.+|+..
T Consensus 21 EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~--~--fg~~n~~vv~g~Ap~~ 96 (187)
T COG2242 21 EIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAA--R--FGVDNLEVVEGDAPEA 96 (187)
T ss_pred HHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHH--H--hCCCcEEEEeccchHh
Confidence 346788889999999999999999999999999666779999999999999 899999 4 578999999999865
Q ss_pred ------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 230 ------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 230 ------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
.|+-|-|-| .+++++|+.++..|||||+||...-++ ||+...-..+++.
T Consensus 97 L~~~~~~daiFIGGg-----------------~~i~~ile~~~~~l~~ggrlV~naitl---E~~~~a~~~~~~~ 151 (187)
T COG2242 97 LPDLPSPDAIFIGGG-----------------GNIEEILEAAWERLKPGGRLVANAITL---ETLAKALEALEQL 151 (187)
T ss_pred hcCCCCCCEEEECCC-----------------CCHHHHHHHHHHHcCcCCeEEEEeecH---HHHHHHHHHHHHc
Confidence 455554433 124489999999999999999998888 8888888888763
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.9e-12 Score=121.36 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=91.2
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee---
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV--- 229 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~--- 229 (355)
-...+..+.+.||++|||+|||+|-.|.++++..++|+|+++|+|..|| .++++. . .+..+++++.+||..
T Consensus 40 r~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~--~--~~~~~i~fv~~dAe~LPf 115 (238)
T COG2226 40 RRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLK--K--KGVQNVEFVVGDAENLPF 115 (238)
T ss_pred HHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhh--c--cCccceEEEEechhhCCC
Confidence 3445566667799999999999999999999988889999999999999 777777 3 355568999999976
Q ss_pred ----eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHH
Q psy7769 230 ----VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDG 289 (355)
Q Consensus 230 ----lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~ 289 (355)
.|+--.++| +++....++.|++++|.|||||+++. +.+++-++..
T Consensus 116 ~D~sFD~vt~~fg-------------lrnv~d~~~aL~E~~RVlKpgG~~~v--le~~~p~~~~ 164 (238)
T COG2226 116 PDNSFDAVTISFG-------------LRNVTDIDKALKEMYRVLKPGGRLLV--LEFSKPDNPV 164 (238)
T ss_pred CCCccCEEEeeeh-------------hhcCCCHHHHHHHHHHhhcCCeEEEE--EEcCCCCchh
Confidence 666665655 45566677899999999999997665 4444445533
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3e-12 Score=119.96 Aligned_cols=121 Identities=16% Similarity=0.121 Sum_probs=83.1
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee----
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV---- 229 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~---- 229 (355)
.++..+.+++|++|||+|||+|..|..++.... .++|+++|+|+.++ +++++. . .+..+|+++++|+..
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~--~--~~~~~i~~v~~da~~lp~~ 113 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLK--R--EGLQNIEFVQGDAEDLPFP 113 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHH--H--TT--SEEEEE-BTTB--S-
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHH--h--hCCCCeeEEEcCHHHhcCC
Confidence 556667889999999999999999999988754 58999999999999 777776 3 345689999999865
Q ss_pred ---eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 230 ---VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 230 ---lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
+|+-++++| ++++.+.++.|+++.+.|||||+++....+- -+|. .+..+..-
T Consensus 114 d~sfD~v~~~fg-------------lrn~~d~~~~l~E~~RVLkPGG~l~ile~~~--p~~~-~~~~~~~~ 168 (233)
T PF01209_consen 114 DNSFDAVTCSFG-------------LRNFPDRERALREMYRVLKPGGRLVILEFSK--PRNP-LLRALYKF 168 (233)
T ss_dssp TT-EEEEEEES--------------GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB---SSH-HHHHHHHH
T ss_pred CCceeEEEHHhh-------------HHhhCCHHHHHHHHHHHcCCCeEEEEeeccC--CCCc-hhhceeee
Confidence 777777777 3444555588999999999999999766544 3453 55555443
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.6e-10 Score=103.70 Aligned_cols=138 Identities=17% Similarity=0.203 Sum_probs=93.9
Q ss_pred hcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhccccccccC-cceEEEEEeccee
Q psy7769 154 ASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRPYDTVLD-IHALKLVKVGGSV 229 (355)
Q Consensus 154 aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g-~~~v~~~~~Da~~ 229 (355)
...++...+++.+|++|||+|||+|..+..++... ..++|+|+|+++.++ +++|++ . .+ ..++.++..|+..
T Consensus 28 ~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~--~--~g~~~~v~~~~~d~~~ 103 (198)
T PRK00377 28 IRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAE--K--FGVLNNIVLIKGEAPE 103 (198)
T ss_pred HHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH--H--hCCCCCeEEEEechhh
Confidence 35566667789999999999999999999998765 347999999999999 788887 3 34 3578888887643
Q ss_pred -eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceEEE
Q psy7769 230 -VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEI 308 (355)
Q Consensus 230 -lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~ 308 (355)
++. . .+ ..+. .+... ....+..+++.+.++|||||++|+.+|++ ++...+...|++ .|+.++.
T Consensus 104 ~l~~-~--~~-~~D~--V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~~~---~~~~~~~~~l~~----~g~~~~~ 167 (198)
T PRK00377 104 ILFT-I--NE-KFDR--IFIGG---GSEKLKEIISASWEIIKKGGRIVIDAILL---ETVNNALSALEN----IGFNLEI 167 (198)
T ss_pred hHhh-c--CC-CCCE--EEECC---CcccHHHHHHHHHHHcCCCcEEEEEeecH---HHHHHHHHHHHH----cCCCeEE
Confidence 111 0 00 0011 01100 00112378999999999999999999877 555566666654 3555555
Q ss_pred ecc
Q psy7769 309 KDL 311 (355)
Q Consensus 309 ~~l 311 (355)
..+
T Consensus 168 ~~~ 170 (198)
T PRK00377 168 TEV 170 (198)
T ss_pred EEE
Confidence 444
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.8e-11 Score=96.49 Aligned_cols=103 Identities=15% Similarity=0.072 Sum_probs=74.6
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc-ee------eecccCC
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG-SV------VYSTCSL 236 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da-~~------lDaPCSg 236 (355)
||.+|||+|||+|..+..+++.....+|+|+|+|+.++ +++++.. . ....++.+++.|+ .. .|.-.+.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~--~~~~~i~~~~~d~~~~~~~~~~~D~v~~~ 77 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAE-E--GLSDRITFVQGDAEFDPDFLEPFDLVICS 77 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH-T--TTTTTEEEEESCCHGGTTTSSCEEEEEEC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh-c--CCCCCeEEEECccccCcccCCCCCEEEEC
Confidence 68999999999999999999966668999999999999 8888731 1 2236899999998 22 3333221
Q ss_pred CCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 237 SPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 237 sG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
.. ....+......+++|+++.+.|+|||++++++|
T Consensus 78 ~~---------~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 78 GF---------TLHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp SG---------SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CC---------ccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 10 111111112233889999999999999999998
|
... |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.5e-10 Score=102.56 Aligned_cols=130 Identities=14% Similarity=0.096 Sum_probs=93.0
Q ss_pred EechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc
Q psy7769 150 CMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG 227 (355)
Q Consensus 150 ~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da 227 (355)
.|...+++....+++++|++|||+|||+|..+..++...+.++|+++|+++.++ +++|++ . .+..+++++..|+
T Consensus 24 t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~--~--~~~~~v~~~~~d~ 99 (196)
T PRK07402 24 TKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCD--R--FGVKNVEVIEGSA 99 (196)
T ss_pred CHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH--H--hCCCCeEEEECch
Confidence 467778888888899999999999999999999998776668999999999999 888887 3 3456788888886
Q ss_pred ee-eecccCCCCCccCCc-cccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 228 SV-VYSTCSLSPIQNDGV-VHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 228 ~~-lDaPCSgsG~t~~~~-l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
.. ++... ...+ +.... ...+++++..+.+.|+|||++++.+++. +.-..+...+++
T Consensus 100 ~~~~~~~~------~~~d~v~~~~-----~~~~~~~l~~~~~~LkpgG~li~~~~~~---~~~~~~~~~~~~ 157 (196)
T PRK07402 100 PECLAQLA------PAPDRVCIEG-----GRPIKEILQAVWQYLKPGGRLVATASSL---EGLYAISEGLAQ 157 (196)
T ss_pred HHHHhhCC------CCCCEEEEEC-----CcCHHHHHHHHHHhcCCCeEEEEEeecH---HHHHHHHHHHHh
Confidence 43 11110 0001 10000 0123478999999999999999999874 333334444544
|
|
| >KOG1540|consensus | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.5e-10 Score=108.46 Aligned_cols=125 Identities=12% Similarity=0.041 Sum_probs=96.6
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcCC------CcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYP------DYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS 228 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~------g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~ 228 (355)
+.+..|+|.+|++|||+|+|+|-.|..+...... ++|+.+|+++++| .+++.++..+ .....+.++.+||.
T Consensus 91 ~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l-~~~~~~~w~~~dAE 169 (296)
T KOG1540|consen 91 MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPL-KASSRVEWVEGDAE 169 (296)
T ss_pred HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCC-CcCCceEEEeCCcc
Confidence 3456778999999999999999999999987644 8999999999999 5555532121 22245889999987
Q ss_pred e-------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 229 V-------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 229 ~-------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
. .|+-.+++| +++....|+.|++|+|.|||||++. |-..+.+|.+.+++|-...
T Consensus 170 ~LpFdd~s~D~yTiafG-------------IRN~th~~k~l~EAYRVLKpGGrf~---cLeFskv~~~~l~~fy~~y 230 (296)
T KOG1540|consen 170 DLPFDDDSFDAYTIAFG-------------IRNVTHIQKALREAYRVLKPGGRFS---CLEFSKVENEPLKWFYDQY 230 (296)
T ss_pred cCCCCCCcceeEEEecc-------------eecCCCHHHHHHHHHHhcCCCcEEE---EEEccccccHHHHHHHHhh
Confidence 6 555555666 3444556688999999999999887 8888888888899988754
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.5e-10 Score=113.70 Aligned_cols=141 Identities=14% Similarity=0.102 Sum_probs=92.2
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc--ceEEEE
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI--HALKLV 223 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~--~~v~~~ 223 (355)
|.-|-....++..+ .+|.+|||+|||+|+.+++++.. +..+|+++|+|+.++ +++|++ . .+. .++.++
T Consensus 205 flDqr~~R~~~~~~---~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~--~--Ngl~~~~v~~i 276 (396)
T PRK15128 205 YLDQRDSRLATRRY---VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVE--L--NKLDLSKAEFV 276 (396)
T ss_pred ChhhHHHHHHHHHh---cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHH--H--cCCCCCcEEEE
Confidence 34454544444433 35889999999999998876643 335899999999999 888888 3 233 357777
Q ss_pred Eecc----------------eeeecccCCCCCccCCccccchHHHHhh-hhHHHHHHHHHhhccCCcEEEEEeCCC--CC
Q psy7769 224 KVGG----------------SVVYSTCSLSPIQNDGVVHMSLKRIWEE-TGCEIEIKHALKLVKVGGSVVYSTCSL--SP 284 (355)
Q Consensus 224 ~~Da----------------~~lDaPCSgsG~t~~~~l~~~~~~l~~l-~~lQ~lL~~A~~~LkpGG~lVYsTCSl--~~ 284 (355)
.+|+ ..+|||+-... ...+... ..+.+++..|.++|+|||.|+++|||- +.
T Consensus 277 ~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~----------k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~ 346 (396)
T PRK15128 277 RDDVFKLLRTYRDRGEKFDVIVMDPPKFVEN----------KSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTS 346 (396)
T ss_pred EccHHHHHHHHHhcCCCCCEEEECCCCCCCC----------hHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCH
Confidence 6654 23888872111 1122211 123388999999999999999999994 44
Q ss_pred CCCHHHHHHHHHhhhhccCceEEEec
Q psy7769 285 IQNDGVVHMSLKRIWEETGCEIEIKD 310 (355)
Q Consensus 285 ~ENE~vV~~~L~~~~~~~~~~~~~~~ 310 (355)
++=.++|..+.. +.+.++..+.
T Consensus 347 ~~f~~~v~~aa~----~~~~~~~~l~ 368 (396)
T PRK15128 347 DLFQKIIADAAI----DAGRDVQFIE 368 (396)
T ss_pred HHHHHHHHHHHH----HcCCeEEEEE
Confidence 333444444433 3455666554
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.2e-09 Score=96.50 Aligned_cols=126 Identities=13% Similarity=0.095 Sum_probs=92.2
Q ss_pred EechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc
Q psy7769 150 CMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG 227 (355)
Q Consensus 150 ~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da 227 (355)
.++....++...|++.++.+|||+|||+|..+..++...+.++|+++|+++.++ +++|++ . .+..++.+...|.
T Consensus 15 ~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~--~--~~~~~i~~~~~d~ 90 (187)
T PRK08287 15 TKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQ--R--FGCGNIDIIPGEA 90 (187)
T ss_pred chHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH--H--hCCCCeEEEecCc
Confidence 345556677777888899999999999999999999887668999999999999 788887 3 3445678877775
Q ss_pred ee-----eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 228 SV-----VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 228 ~~-----lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
.. +|.-.++. . ...+.++++.+.+.|+|||++++..... +|...+..+++++
T Consensus 91 ~~~~~~~~D~v~~~~----------~------~~~~~~~l~~~~~~Lk~gG~lv~~~~~~---~~~~~~~~~l~~~ 147 (187)
T PRK08287 91 PIELPGKADAIFIGG----------S------GGNLTAIIDWSLAHLHPGGRLVLTFILL---ENLHSALAHLEKC 147 (187)
T ss_pred hhhcCcCCCEEEECC----------C------ccCHHHHHHHHHHhcCCCeEEEEEEecH---hhHHHHHHHHHHC
Confidence 32 22221110 0 0122378899999999999999976543 6777777778764
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.9e-09 Score=99.41 Aligned_cols=109 Identities=15% Similarity=0.073 Sum_probs=72.4
Q ss_pred hhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCC
Q psy7769 161 ALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSP 238 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG 238 (355)
.+++++|++|||+|||+|..+.+++...+.|+|+|+|+++.++ +.++++ . ..|+.++.+|+.. |..-.+
T Consensus 67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~--~----~~nv~~i~~D~~~---~~~~~~ 137 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAE--E----RKNIIPILADARK---PERYAH 137 (226)
T ss_pred hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhh--h----cCCcEEEECCCCC---cchhhh
Confidence 4788999999999999999999999987668999999999998 666665 2 2467787888642 110001
Q ss_pred CccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 239 IQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 239 ~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
+...-++.+.. ...-...+.+|.++.++|||||+++.+..
T Consensus 138 l~~~~D~i~~d--~~~p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 138 VVEKVDVIYQD--VAQPNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred ccccCCEEEEC--CCChhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 00001111110 00000011568999999999999998533
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.9e-09 Score=95.09 Aligned_cols=132 Identities=17% Similarity=0.035 Sum_probs=86.6
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce----
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS---- 228 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~---- 228 (355)
+.+....+...++.+|||+|||+|..+..++... .+|+++|+++.++ +++|+. . .+. ++++...|..
T Consensus 8 ~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~--~--~~~-~~~~~~~d~~~~~~ 80 (179)
T TIGR00537 8 SLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG--KCILTTDINPFAVKELRENAK--L--NNV-GLDVVMTDLFKGVR 80 (179)
T ss_pred HHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHH--H--cCC-ceEEEEcccccccC
Confidence 5666677777788899999999999999998875 3899999999999 777776 2 222 3555555542
Q ss_pred ------eeecccCCCCCccCCccccchHHH---HhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 229 ------VVYSTCSLSPIQNDGVVHMSLKRI---WEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 229 ------~lDaPCSgsG~t~~~~l~~~~~~l---~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
..++|+.........+ .|..... ....... ++|..+.++|||||++++++++. .++..+...|++
T Consensus 81 ~~fD~Vi~n~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~---~~~~~~~~~l~~ 155 (179)
T TIGR00537 81 GKFDVILFNPPYLPLEDDLRRG-DWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL---NGEPDTFDKLDE 155 (179)
T ss_pred CcccEEEECCCCCCCcchhccc-chhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc---CChHHHHHHHHh
Confidence 2455542111000000 0100000 0001223 89999999999999999999877 456777777765
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=107.25 Aligned_cols=107 Identities=14% Similarity=0.016 Sum_probs=77.7
Q ss_pred HhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc----------
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG---------- 227 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da---------- 227 (355)
.++++++|+.|||.|||+|+.+..++... ..|+++|+++.++ ++.|++ . .+..++.+...|+
T Consensus 176 ~l~~~~~g~~vLDp~cGtG~~lieaa~~~--~~v~g~Di~~~~~~~a~~nl~--~--~g~~~i~~~~~D~~~l~~~~~~~ 249 (329)
T TIGR01177 176 NLARVTEGDRVLDPFCGTGGFLIEAGLMG--AKVIGCDIDWKMVAGARINLE--H--YGIEDFFVKRGDATKLPLSSESV 249 (329)
T ss_pred HHhCCCCcCEEEECCCCCCHHHHHHHHhC--CeEEEEcCCHHHHHHHHHHHH--H--hCCCCCeEEecchhcCCcccCCC
Confidence 34578899999999999999988766543 7899999999999 788887 3 3444455655554
Q ss_pred --eeeecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCC
Q psy7769 228 --SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 228 --~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
...|||+.... . . .......++ ++|..+.+.|||||+++|.+++-
T Consensus 250 D~Iv~dPPyg~~~-~----~-----~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 250 DAIATDPPYGRST-T----A-----AGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CEEEECCCCcCcc-c----c-----cCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 33788873211 0 0 001122444 89999999999999999999875
|
This family is found exclusively in the Archaea. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.6e-09 Score=108.43 Aligned_cols=121 Identities=15% Similarity=0.026 Sum_probs=90.2
Q ss_pred EechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc--ceEEEEEe
Q psy7769 150 CMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI--HALKLVKV 225 (355)
Q Consensus 150 ~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~--~~v~~~~~ 225 (355)
-|-.+...+...+. |.+|||+||-+|+.|.|+|..+ ...|+.||.|...+ +++|++ - .|. ..+.++++
T Consensus 204 DqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~--L--Ng~~~~~~~~i~~ 275 (393)
T COG1092 204 DQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAE--L--NGLDGDRHRFIVG 275 (393)
T ss_pred HhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHH--h--cCCCccceeeehh
Confidence 37777666666553 9999999999999999988765 24899999999999 899998 3 343 45678777
Q ss_pred cce----------------eeecccCCCCCccCCc-cccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCH
Q psy7769 226 GGS----------------VVYSTCSLSPIQNDGV-VHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQND 288 (355)
Q Consensus 226 Da~----------------~lDaPCSgsG~t~~~~-l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE 288 (355)
|+. .+|||- ..+.. -.|+..+-. -.|+..+.++|+|||+++.||||-.-...+
T Consensus 276 Dvf~~l~~~~~~g~~fDlIilDPPs-----F~r~k~~~~~~~rdy-----~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~ 345 (393)
T COG1092 276 DVFKWLRKAERRGEKFDLIILDPPS-----FARSKKQEFSAQRDY-----KDLNDLALRLLAPGGTLVTSSCSRHFSSDL 345 (393)
T ss_pred hHHHHHHHHHhcCCcccEEEECCcc-----cccCcccchhHHHHH-----HHHHHHHHHHcCCCCEEEEEecCCccCHHH
Confidence 653 399997 22222 112221111 189999999999999999999999877664
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.1e-09 Score=101.05 Aligned_cols=112 Identities=11% Similarity=0.011 Sum_probs=79.6
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee----
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV---- 229 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~---- 229 (355)
+.+..+.++++++|||+|||+|..+..++...+ .++|+|+|+|+.++ ++++..... .....++.++++|+..
T Consensus 64 ~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~-~~~~~~i~~~~~d~~~lp~~ 142 (261)
T PLN02233 64 MAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKA-KSCYKNIEWIEGDATDLPFD 142 (261)
T ss_pred HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhh-hccCCCeEEEEcccccCCCC
Confidence 445566788999999999999999988887653 47999999999999 554432000 0123568888888754
Q ss_pred ---eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 230 ---VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 230 ---lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
+|.-+++.+ +....+.+++|.++.+.|||||+++.++.+-
T Consensus 143 ~~sfD~V~~~~~-------------l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 143 DCYFDAITMGYG-------------LRNVVDRLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred CCCEeEEEEecc-------------cccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence 344433332 1222233478999999999999999987764
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.7e-09 Score=89.04 Aligned_cols=99 Identities=17% Similarity=0.066 Sum_probs=72.4
Q ss_pred CCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEeccee--------------
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSV-------------- 229 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~-------------- 229 (355)
|.+|||+|||+|..+.++++.. ..+++++|+++..+ ++.++. . .+. .++++...|...
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~--~--~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLP--R--NGLDDRVEVIVGDARDLPEPLPDGKFDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCH--H--CTTTTTEEEEESHHHHHHHTCTTT-EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHH--H--ccCCceEEEEECchhhchhhccCceeEEEE
Confidence 6799999999999999999887 68999999999999 778887 3 233 457888877643
Q ss_pred eecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCC
Q psy7769 230 VYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 230 lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCS 281 (355)
.|+|..... ........+. ++++++.++|||||.+++.+|.
T Consensus 76 ~npP~~~~~-----------~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 76 TNPPYGPRS-----------GDKAALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp E--STTSBT-----------T----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred ECCCCcccc-----------ccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 566652211 0111112244 8999999999999999999874
|
... |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-08 Score=98.19 Aligned_cols=117 Identities=18% Similarity=0.091 Sum_probs=70.6
Q ss_pred hCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeee-cccCCC
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVY-STCSLS 237 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lD-aPCSgs 237 (355)
+.++||++|||+|||||.+|.++|..+. .|.|+|+|+++.++ +....+ . ..||.++..|+..-+ .+. -.
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak--~----r~NI~~I~~Da~~p~~y~~-~~ 200 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK--K----RPNIVPIIEDARYPQKYRM-LV 200 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh--h----cCCCEEEECCccChhhhhc-cc
Confidence 4578999999999999999999999874 58999999997655 433333 1 145677777764311 000 00
Q ss_pred CCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE---eCCCCCCCCHHH
Q psy7769 238 PIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS---TCSLSPIQNDGV 290 (355)
Q Consensus 238 G~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs---TCSl~~~ENE~v 290 (355)
+ + -++.+.. +....+.+.++.+|.++|||||+++.+ .|.-....-|.+
T Consensus 201 ~-~--vDvV~~D--va~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~ 251 (293)
T PTZ00146 201 P-M--VDVIFAD--VAQPDQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVV 251 (293)
T ss_pred C-C--CCEEEEe--CCCcchHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHH
Confidence 0 0 0111100 000001114566899999999999984 344333334455
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.5e-09 Score=97.08 Aligned_cols=114 Identities=13% Similarity=0.056 Sum_probs=78.7
Q ss_pred HHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeec
Q psy7769 156 LLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYS 232 (355)
Q Consensus 156 ~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDa 232 (355)
......+.+++|++|||+|||+|..+..+++..+ .++|+++|+++.++ +++++. . .+..++.++.+|+..++.
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~--~--~~~~~v~~~~~d~~~~~~ 110 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVK--D--AGLHNVELVHGNAMELPF 110 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH--h--cCCCceEEEEechhcCCC
Confidence 3445567888999999999999999999998753 47999999999999 777776 3 244578888888754322
Q ss_pred ccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 233 TCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 233 PCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
+- + + -++.+....+.......++|+++.+.|+|||.++..+
T Consensus 111 ~~---~-~--fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 111 DD---N-S--FDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred CC---C-C--ccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence 21 0 0 1111100011122233378999999999999998764
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.1e-09 Score=97.22 Aligned_cols=131 Identities=15% Similarity=0.032 Sum_probs=85.8
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc-eeeec---ccCCCCC
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG-SVVYS---TCSLSPI 239 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da-~~lDa---PCSgsG~ 239 (355)
++.+|||+|||+|..+..+++..+...|+|+|+++.++ +++++. . .+..++.+++.|+ ..++. +.+-..+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~--~--~~~~~v~~~~~d~~~~l~~~~~~~~~D~V 115 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIE--E--EGLTNLRLLCGDAVEVLLDMFPDGSLDRI 115 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHH--H--cCCCCEEEEecCHHHHHHHHcCccccceE
Confidence 67899999999999999999877667899999999999 777776 3 3446788999988 43321 1110000
Q ss_pred ccCCccccchHHHH-hhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceEE
Q psy7769 240 QNDGVVHMSLKRIW-EETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIE 307 (355)
Q Consensus 240 t~~~~l~~~~~~l~-~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~ 307 (355)
.......|...... .....+.+|+.+.++|||||.++++|+ |+..+...++.. ++.|+.++
T Consensus 116 ~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~------~~~~~~~~~~~~-~~~g~~~~ 177 (202)
T PRK00121 116 YLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD------WEGYAEYMLEVL-SAEGGFLV 177 (202)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC------CHHHHHHHHHHH-HhCccccc
Confidence 00000012111000 001122789999999999999999874 667777777654 34555444
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.2e-09 Score=95.45 Aligned_cols=111 Identities=14% Similarity=0.024 Sum_probs=81.8
Q ss_pred echhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce
Q psy7769 151 MDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS 228 (355)
Q Consensus 151 QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~ 228 (355)
.|.+|.+.+..+...++.+|||+|||+|..++.++......+|+++|+++..+ +++|++ . .+..++.+...|..
T Consensus 16 ~d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~--~--n~~~~v~~~~~d~~ 91 (170)
T PF05175_consen 16 LDAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAE--R--NGLENVEVVQSDLF 91 (170)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHH--H--TTCTTEEEEESSTT
T ss_pred CCHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHH--h--cCcccccccccccc
Confidence 47888888888877788899999999999999999987666899999999999 888888 3 34444788777753
Q ss_pred e-----------eecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEe
Q psy7769 229 V-----------VYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 229 ~-----------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsT 279 (355)
. .+||....+ ....... ++++.|.++|||||.+++..
T Consensus 92 ~~~~~~~fD~Iv~NPP~~~~~--------------~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 92 EALPDGKFDLIVSNPPFHAGG--------------DDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp TTCCTTCEEEEEE---SBTTS--------------HCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccceeEEEEccchhccc--------------ccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 2 444431111 1111222 89999999999999996644
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.7e-09 Score=100.88 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=81.5
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEE
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLV 223 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~ 223 (355)
+|.-| ..+++..|++.||++||+.++|+|+.|..++..+ +.|+|+.+|+++.|+ +++|++ . .+. .+|.+.
T Consensus 24 iYpkD--~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~--~--~gl~~~v~~~ 97 (247)
T PF08704_consen 24 IYPKD--ISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFE--R--HGLDDNVTVH 97 (247)
T ss_dssp --HHH--HHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHH--H--TTCCTTEEEE
T ss_pred eeCch--HHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHH--H--cCCCCCceeE
Confidence 45555 5588899999999999999999999999999876 459999999999999 999998 4 344 467877
Q ss_pred Eecce---------------eeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhc-cCCcEEE-EEeCCCCCCC
Q psy7769 224 KVGGS---------------VVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLV-KVGGSVV-YSTCSLSPIQ 286 (355)
Q Consensus 224 ~~Da~---------------~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~L-kpGG~lV-YsTCSl~~~E 286 (355)
+.|.. .+|.|. |+ +.+.++.+.| |+||+++ ||.|-
T Consensus 98 ~~Dv~~~g~~~~~~~~~DavfLDlp~--------------Pw---------~~i~~~~~~L~~~gG~i~~fsP~i----- 149 (247)
T PF08704_consen 98 HRDVCEEGFDEELESDFDAVFLDLPD--------------PW---------EAIPHAKRALKKPGGRICCFSPCI----- 149 (247)
T ss_dssp ES-GGCG--STT-TTSEEEEEEESSS--------------GG---------GGHHHHHHHE-EEEEEEEEEESSH-----
T ss_pred ecceecccccccccCcccEEEEeCCC--------------HH---------HHHHHHHHHHhcCCceEEEECCCH-----
Confidence 76642 244443 44 4588999999 8999887 55553
Q ss_pred CHHHHHHHHHhh
Q psy7769 287 NDGVVHMSLKRI 298 (355)
Q Consensus 287 NE~vV~~~L~~~ 298 (355)
++|++.++..
T Consensus 150 --eQv~~~~~~L 159 (247)
T PF08704_consen 150 --EQVQKTVEAL 159 (247)
T ss_dssp --HHHHHHHHHH
T ss_pred --HHHHHHHHHH
Confidence 5666555544
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.7e-08 Score=91.00 Aligned_cols=114 Identities=13% Similarity=0.048 Sum_probs=81.2
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccCC
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDG 243 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~~ 243 (355)
+|.+|||+|||+|..+..++.....++|+|+|.++.++ ++++++ . .+..+++++++|+..+.. .+ .-
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~--~--~~~~~i~~i~~d~~~~~~----~~---~f 110 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKA--E--LGLNNVEIVNGRAEDFQH----EE---QF 110 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHH--H--hCCCCeEEEecchhhccc----cC---Cc
Confidence 48899999999999999988776668999999999999 777777 3 355678899888765311 01 01
Q ss_pred ccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 244 VVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 244 ~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
++.+... +..+..+++.+.++|+|||+++.. .....+..+..+.++.
T Consensus 111 D~I~s~~----~~~~~~~~~~~~~~LkpgG~lvi~----~~~~~~~~~~~~~e~~ 157 (181)
T TIGR00138 111 DVITSRA----LASLNVLLELTLNLLKVGGYFLAY----KGKKYLDEIEEAKRKC 157 (181)
T ss_pred cEEEehh----hhCHHHHHHHHHHhcCCCCEEEEE----cCCCcHHHHHHHHHhh
Confidence 1112111 223337788889999999999976 4556677777777654
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-08 Score=83.89 Aligned_cols=109 Identities=14% Similarity=0.134 Sum_probs=75.4
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCC
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSL 236 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSg 236 (355)
...+.+.++++|||+|||+|..+..++...+.++|+++|+++.++ ++++++ . .+..+++++..|+......+
T Consensus 12 ~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--~--~~~~~~~~~~~~~~~~~~~~-- 85 (124)
T TIGR02469 12 LSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNAR--R--FGVSNIVIVEGDAPEALEDS-- 85 (124)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHH--H--hCCCceEEEeccccccChhh--
Confidence 445567788999999999999999999887668999999999999 777777 3 34456777777754211111
Q ss_pred CCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 237 SPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 237 sG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
...-++.|... .....+++++++.++|||||+++.+.
T Consensus 86 ---~~~~D~v~~~~---~~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 86 ---LPEPDRVFIGG---SGGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ---cCCCCEEEECC---cchhHHHHHHHHHHHcCCCCEEEEEe
Confidence 00111111110 01122388999999999999999764
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.87 E-value=1e-08 Score=94.46 Aligned_cols=107 Identities=13% Similarity=0.121 Sum_probs=75.7
Q ss_pred HHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeec
Q psy7769 156 LLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYS 232 (355)
Q Consensus 156 ~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDa 232 (355)
.....++++++|++|||+|||+|..|..++...+ .++|+++|+++.++ ++++++ . .+..+++++.+|+.....
T Consensus 67 ~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~--~--~g~~~v~~~~~d~~~~~~ 142 (215)
T TIGR00080 67 AMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLR--K--LGLDNVIVIVGDGTQGWE 142 (215)
T ss_pred HHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH--H--CCCCCeEEEECCcccCCc
Confidence 4555677899999999999999999999998864 47899999999999 888888 4 456778898888753110
Q ss_pred ccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE
Q psy7769 233 TCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 233 PCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs 278 (355)
. .+ ..+. +.... ....+...+.+.|+|||+++..
T Consensus 143 ~---~~-~fD~-Ii~~~-------~~~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 143 P---LA-PYDR-IYVTA-------AGPKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred c---cC-CCCE-EEEcC-------CcccccHHHHHhcCcCcEEEEE
Confidence 0 00 0010 00000 0114456678899999999985
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.8e-08 Score=94.70 Aligned_cols=105 Identities=20% Similarity=0.121 Sum_probs=83.3
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCC-CcEEEEcCCchhh--HHhhccccccccCcce-EEEE
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYP-DYYCMDGASLLPV--LALNIRPYDTVLDIHA-LKLV 223 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~-g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~-v~~~ 223 (355)
+|.-| |.+.+..+++.||++|||+++|+|..|..||...++ |+|+.+|+.+.++ +++|++ . .+..+ +.+.
T Consensus 78 IyPKD--~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~--~--~~l~d~v~~~ 151 (256)
T COG2519 78 IYPKD--AGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLS--E--FGLGDRVTLK 151 (256)
T ss_pred ecCCC--HHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHH--H--hccccceEEE
Confidence 45555 678999999999999999999999999999987655 9999999999999 999999 4 35533 6666
Q ss_pred Eeccee-----------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEE-EEeCC
Q psy7769 224 KVGGSV-----------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVV-YSTCS 281 (355)
Q Consensus 224 ~~Da~~-----------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lV-YsTCS 281 (355)
..|... +|.|- |+ +.|.++.+.|||||.++ |+.|.
T Consensus 152 ~~Dv~~~~~~~~vDav~LDmp~--------------PW---------~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 152 LGDVREGIDEEDVDAVFLDLPD--------------PW---------NVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred eccccccccccccCEEEEcCCC--------------hH---------HHHHHHHHHhCCCcEEEEEcCCH
Confidence 555432 55553 44 56999999999999877 55554
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.1e-09 Score=102.46 Aligned_cols=122 Identities=15% Similarity=0.123 Sum_probs=81.1
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEe
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKV 225 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~ 225 (355)
|.-|-....++.... .|.+|||++|-+||.+++++..+ ..+|+++|.|...+ +++|+. .+......++++..
T Consensus 108 FlDqR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~--lNg~~~~~~~~~~~ 181 (286)
T PF10672_consen 108 FLDQRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAA--LNGLDLDRHRFIQG 181 (286)
T ss_dssp -GGGHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHH--HTT-CCTCEEEEES
T ss_pred cHHHHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHH--HcCCCccceEEEec
Confidence 455777777776653 58899999999999999877543 35799999999999 888887 32122356788877
Q ss_pred cce---------------eeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCC
Q psy7769 226 GGS---------------VVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQN 287 (355)
Q Consensus 226 Da~---------------~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~EN 287 (355)
|+. .+|||. ...+. |... ....+|+..++++|+|||.|+.||||-.-..+
T Consensus 182 Dvf~~l~~~~~~~~fD~IIlDPPs-----F~k~~--~~~~-----~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~ 246 (286)
T PF10672_consen 182 DVFKFLKRLKKGGRFDLIILDPPS-----FAKSK--FDLE-----RDYKKLLRRAMKLLKPGGLLLTCSCSHHISPD 246 (286)
T ss_dssp -HHHHHHHHHHTT-EEEEEE--SS-----EESST--CEHH-----HHHHHHHHHHHHTEEEEEEEEEEE--TTS-HH
T ss_pred CHHHHHHHHhcCCCCCEEEECCCC-----CCCCH--HHHH-----HHHHHHHHHHHHhcCCCCEEEEEcCCcccCHH
Confidence 653 399997 22221 2111 11228999999999999999999999876654
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-08 Score=93.73 Aligned_cols=108 Identities=13% Similarity=0.100 Sum_probs=75.2
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeee
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVY 231 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lD 231 (355)
......++++++|++|||+|||+|..|..++.... .++|+++|+++..+ ++++++ . .+..++.++.+|+....
T Consensus 65 ~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~--~--~g~~~v~~~~gd~~~~~ 140 (212)
T PRK13942 65 VAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLK--K--LGYDNVEVIVGDGTLGY 140 (212)
T ss_pred HHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH--H--cCCCCeEEEECCcccCC
Confidence 34556677899999999999999999999998764 37999999999999 888887 3 45668899999975311
Q ss_pred cccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE
Q psy7769 232 STCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 232 aPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs 278 (355)
.+- + ..+.- +... ...++....++.|||||+++.-
T Consensus 141 ~~~---~-~fD~I--~~~~------~~~~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 141 EEN---A-PYDRI--YVTA------AGPDIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred CcC---C-CcCEE--EECC------CcccchHHHHHhhCCCcEEEEE
Confidence 110 1 00110 0000 0013344566789999998874
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.5e-08 Score=90.63 Aligned_cols=112 Identities=16% Similarity=0.086 Sum_probs=72.0
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc-----------ee
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG-----------SV 229 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da-----------~~ 229 (355)
.+.+|++|||+|||+|..+..++... .++|+++|+++.++ +++|++ . .+. ++.++..|. ..
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~--~--~~~-~~~~~~~d~~~~~~~~~fD~Vi 106 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNAL--L--AGV-DVDVRRGDWARAVEFRPFDVVV 106 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHH--H--hCC-eeEEEECchhhhccCCCeeEEE
Confidence 46789999999999999999888753 35999999999999 777776 2 222 345554443 23
Q ss_pred eeccc---CCCCCccCCc--cccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 230 VYSTC---SLSPIQNDGV--VHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 230 lDaPC---SgsG~t~~~~--l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
.++|. +..+ ...+. ..|... ......++.++..+.++|||||++++.+.+.
T Consensus 107 ~npPy~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 107 SNPPYVPAPPDA-PPSRGPARAWDAG-PDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred ECCCCCCCCccc-ccccChhHhhhCC-CcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 55443 2222 11111 112211 0111123388999999999999999865555
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.7e-08 Score=91.75 Aligned_cols=103 Identities=14% Similarity=-0.009 Sum_probs=75.3
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccC
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQND 242 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~ 242 (355)
++|.+|||+|||+|..+..++.....++|+++|.++.++ ++++++ . .+..++++...|+..++.. + +
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~--~--~~l~~i~~~~~d~~~~~~~----~-~-- 112 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAA--E--LGLKNVTVVHGRAEEFGQE----E-K-- 112 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHH--H--cCCCCEEEEeccHhhCCCC----C-C--
Confidence 358999999999999999999866668999999999999 777777 3 3555688988887553221 1 1
Q ss_pred CccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 243 GVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 243 ~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
-++.+.. ....++.+++.++++|||||++++.....
T Consensus 113 fDlV~~~----~~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 113 FDVVTSR----AVASLSDLVELCLPLLKPGGRFLALKGRD 148 (187)
T ss_pred ccEEEEc----cccCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 1111111 11234478999999999999999886553
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.5e-08 Score=106.03 Aligned_cols=122 Identities=11% Similarity=0.020 Sum_probs=85.0
Q ss_pred EechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc--ceEEEEEe
Q psy7769 150 CMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI--HALKLVKV 225 (355)
Q Consensus 150 ~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~--~~v~~~~~ 225 (355)
-|-....++..+. +|.+|||+|||+|+.+++++..+ ..+|+++|+|+..+ +++|++ . .+. .++++++.
T Consensus 525 Dqr~~R~~~~~~~---~g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~--~--ng~~~~~v~~i~~ 596 (702)
T PRK11783 525 DHRPTRRMIGQMA---KGKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFA--L--NGLSGRQHRLIQA 596 (702)
T ss_pred HHHHHHHHHHHhc---CCCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHH--H--hCCCccceEEEEc
Confidence 3555555544443 58899999999999999998753 34799999999999 889987 3 233 35777766
Q ss_pred cc-------------eeeecccCCCCCccCCccccchHHHHhhhh-HHHHHHHHHhhccCCcEEEEEeCCCCCCCC
Q psy7769 226 GG-------------SVVYSTCSLSPIQNDGVVHMSLKRIWEETG-CEIEIKHALKLVKVGGSVVYSTCSLSPIQN 287 (355)
Q Consensus 226 Da-------------~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~-lQ~lL~~A~~~LkpGG~lVYsTCSl~~~EN 287 (355)
|. ..+|||.-+.+- . ...+..... ..+++..+.++|+|||.+++++|+-.....
T Consensus 597 D~~~~l~~~~~~fDlIilDPP~f~~~~---~-----~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~ 664 (702)
T PRK11783 597 DCLAWLKEAREQFDLIFIDPPTFSNSK---R-----MEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMD 664 (702)
T ss_pred cHHHHHHHcCCCcCEEEECCCCCCCCC---c-----cchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChh
Confidence 64 338999843220 0 001111112 228999999999999999999998765543
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.4e-08 Score=97.45 Aligned_cols=106 Identities=8% Similarity=-0.048 Sum_probs=75.0
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccCCCCCcc
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLSPIQN 241 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG~t~ 241 (355)
+++++|||+|||+|+.+..+++.. ..+|+++|+++.++ ++++.+ . .+. .++.+..+|+..+..+- +
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~--~--~g~~~~v~~~~~D~~~~~~~~---~--- 185 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAA--A--QGLSDKVSFQVADALNQPFED---G--- 185 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHH--h--cCCCCceEEEEcCcccCCCCC---C---
Confidence 688999999999999999999875 47999999999999 666665 2 233 46889888875432211 1
Q ss_pred CCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 242 DGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 242 ~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
.-++.|....+......+++++++.++|||||+++.+++.
T Consensus 186 ~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 186 QFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred CccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 1112222222333333447899999999999999998764
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.6e-08 Score=92.31 Aligned_cols=111 Identities=17% Similarity=0.070 Sum_probs=74.2
Q ss_pred hhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCC
Q psy7769 161 ALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLS 237 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgs 237 (355)
...+++|++|||+|||+|..+..++...+ .++|+++|+++.++ ++++.. . .+..++.+...|...++.+-
T Consensus 72 ~~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~--~--~g~~~v~~~~~d~~~l~~~~--- 144 (272)
T PRK11873 72 LAELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANAR--K--AGYTNVEFRLGEIEALPVAD--- 144 (272)
T ss_pred hccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHH--H--cCCCCEEEEEcchhhCCCCC---
Confidence 34678999999999999988887777654 47899999999999 777776 3 34567788887765432210
Q ss_pred CCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 238 PIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 238 G~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
+ + -++.+...-+......++++++++++|||||+++.+.-.
T Consensus 145 ~-~--fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 145 N-S--VDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred C-c--eeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEee
Confidence 0 0 011111000111112237899999999999999997543
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.4e-08 Score=89.77 Aligned_cols=106 Identities=14% Similarity=0.120 Sum_probs=72.5
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeec
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYS 232 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDa 232 (355)
.....|++++|++|||+|||+|..+..+++..+ .++|+++|+++.++ +++|++ . .+. .++++..+|+...-+
T Consensus 63 ~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~--~--~~~~~~v~~~~~d~~~~~~ 138 (205)
T PRK13944 63 MMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIE--R--LGYWGVVEVYHGDGKRGLE 138 (205)
T ss_pred HHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH--H--cCCCCcEEEEECCcccCCc
Confidence 345667889999999999999999999998764 48999999999999 778887 3 344 357888888753111
Q ss_pred ccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE
Q psy7769 233 TCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 233 PCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs 278 (355)
+ .+ ..+. + +... ....+....++.|+|||+|+..
T Consensus 139 ~---~~-~fD~-I-i~~~------~~~~~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 139 K---HA-PFDA-I-IVTA------AASTIPSALVRQLKDGGVLVIP 172 (205)
T ss_pred c---CC-CccE-E-EEcc------CcchhhHHHHHhcCcCcEEEEE
Confidence 1 00 0010 0 0000 0013345677889999999885
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.1e-08 Score=96.68 Aligned_cols=96 Identities=14% Similarity=0.104 Sum_probs=70.1
Q ss_pred hhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc-----------
Q psy7769 161 ALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG----------- 227 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da----------- 227 (355)
.+...++.+|||+|||+|..++.+|... ..|+|+|+++.++ +++|++ . .+..++++..+|+
T Consensus 168 ~l~~~~~~~VLDl~cG~G~~sl~la~~~--~~V~gvD~s~~av~~A~~n~~--~--~~l~~v~~~~~D~~~~~~~~~~~~ 241 (315)
T PRK03522 168 WVRELPPRSMWDLFCGVGGFGLHCATPG--MQLTGIEISAEAIACAKQSAA--E--LGLTNVQFQALDSTQFATAQGEVP 241 (315)
T ss_pred HHHhcCCCEEEEccCCCCHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHHH--H--cCCCceEEEEcCHHHHHHhcCCCC
Confidence 3344467899999999999999999854 6899999999999 888887 3 3455677776654
Q ss_pred --eeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCC
Q psy7769 228 --SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSP 284 (355)
Q Consensus 228 --~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~ 284 (355)
..+|||+.|.+ ..+..++.-++| +.|||++|.-..
T Consensus 242 D~Vv~dPPr~G~~---------------------~~~~~~l~~~~~-~~ivyvsc~p~t 278 (315)
T PRK03522 242 DLVLVNPPRRGIG---------------------KELCDYLSQMAP-RFILYSSCNAQT 278 (315)
T ss_pred eEEEECCCCCCcc---------------------HHHHHHHHHcCC-CeEEEEECCccc
Confidence 33888886654 112233344567 589999998744
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-07 Score=86.19 Aligned_cols=127 Identities=13% Similarity=0.018 Sum_probs=82.0
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccC
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCS 235 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCS 235 (355)
...+.+.++.+|||+|||+|..+..++... ..++++++|+++.++ ++++.. ....++.+...|....+.+-
T Consensus 12 ~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~-----~~~~~~~~~~~d~~~~~~~~- 85 (241)
T PRK08317 12 FELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA-----GLGPNVEFVRGDADGLPFPD- 85 (241)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh-----CCCCceEEEecccccCCCCC-
Confidence 456678899999999999999999999876 457999999999998 555533 12245777777764322110
Q ss_pred CCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC----CCCCHHHHHHHHH
Q psy7769 236 LSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS----PIQNDGVVHMSLK 296 (355)
Q Consensus 236 gsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~----~~ENE~vV~~~L~ 296 (355)
+ + .++.+...-+........+++++.++|||||.++.+.+... ...+...+..++.
T Consensus 86 --~-~--~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (241)
T PRK08317 86 --G-S--FDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILN 145 (241)
T ss_pred --C-C--ceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHH
Confidence 1 1 11111111122222333789999999999999999876532 2234444444443
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.4e-08 Score=88.96 Aligned_cols=122 Identities=13% Similarity=0.051 Sum_probs=81.6
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccCC
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDG 243 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~~ 243 (355)
.+.+|||+|||+|..+..+|...+.+.|+++|++..++ +++++. . .+..|+.++++|+..+....-..+ +.+.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~--~--~~l~ni~~i~~d~~~~~~~~~~~~-~~d~ 90 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKAN--K--LGLKNLHVLCGDANELLDKFFPDG-SLSK 90 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHH--H--hCCCCEEEEccCHHHHHHhhCCCC-ceeE
Confidence 45699999999999999999887778999999999999 677776 3 355689999999854211110001 1111
Q ss_pred c-c----ccchHHH-HhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 244 V-V----HMSLKRI-WEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 244 ~-l----~~~~~~l-~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
- + .|...+. +.+....++++.+.+.|||||.|.++| .++.-..++++..
T Consensus 91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t------d~~~~~~~~~~~~ 145 (194)
T TIGR00091 91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT------DNEPLFEDMLKVL 145 (194)
T ss_pred EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe------CCHHHHHHHHHHH
Confidence 1 1 1322111 111111288999999999999999988 5556666665544
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.4e-08 Score=90.26 Aligned_cols=103 Identities=10% Similarity=0.026 Sum_probs=72.5
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee---
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV--- 229 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~--- 229 (355)
+......+.+.++.+|||+|||+|..+..+++..+.++|+++|+++.++ +++++. ++.+...|...
T Consensus 20 ~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~---------~~~~~~~d~~~~~~ 90 (258)
T PRK01683 20 ARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP---------DCQFVEADIASWQP 90 (258)
T ss_pred HHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC---------CCeEEECchhccCC
Confidence 3344455567889999999999999999999887668999999999998 555543 24566666543
Q ss_pred ---eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 230 ---VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 230 ---lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
+|...+... ++|-+ ....+|+.+.+.|||||.++.++
T Consensus 91 ~~~fD~v~~~~~------l~~~~-------d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 91 PQALDLIFANAS------LQWLP-------DHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred CCCccEEEEccC------hhhCC-------CHHHHHHHHHHhcCCCcEEEEEC
Confidence 222222111 22322 22378999999999999998864
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.6e-08 Score=93.43 Aligned_cols=99 Identities=19% Similarity=0.181 Sum_probs=72.2
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcCC-CcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee----
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYP-DYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV---- 229 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~-g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~---- 229 (355)
....+|+++||++|||+++|+|..|..++.+.++ |+|+++|+++... +++++. . .+..|+.++.+|+..
T Consensus 63 ~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~--~--~~~~nv~~~~gdg~~g~~~ 138 (209)
T PF01135_consen 63 RMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLA--R--LGIDNVEVVVGDGSEGWPE 138 (209)
T ss_dssp HHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHH--H--HTTHSEEEEES-GGGTTGG
T ss_pred HHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHH--H--hccCceeEEEcchhhcccc
Confidence 4457778999999999999999999999998754 7899999999888 889998 4 467789999999864
Q ss_pred ---eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE
Q psy7769 230 ---VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 230 ---lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs 278 (355)
.|.-..+.+. . ++=...++.|++||+||.-
T Consensus 139 ~apfD~I~v~~a~----------~---------~ip~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 139 EAPFDRIIVTAAV----------P---------EIPEALLEQLKPGGRLVAP 171 (209)
T ss_dssp G-SEEEEEESSBB----------S---------S--HHHHHTEEEEEEEEEE
T ss_pred CCCcCEEEEeecc----------c---------hHHHHHHHhcCCCcEEEEE
Confidence 3333332221 0 2234566789999999973
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.6e-08 Score=91.55 Aligned_cols=100 Identities=16% Similarity=0.103 Sum_probs=77.8
Q ss_pred HHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee----
Q psy7769 156 LLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV---- 229 (355)
Q Consensus 156 ~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~---- 229 (355)
+....+|+++||++||+++||+|.-|+.||++. ++|+++|+.+.-. +++|++ . +|..||.+.++||..
T Consensus 62 A~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~--~--lg~~nV~v~~gDG~~G~~~ 135 (209)
T COG2518 62 ARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLE--T--LGYENVTVRHGDGSKGWPE 135 (209)
T ss_pred HHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHH--H--cCCCceEEEECCcccCCCC
Confidence 344678899999999999999999999999998 6999999999888 899999 4 678889999999975
Q ss_pred ---eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 230 ---VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 230 ---lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
.|.-|-.-+.. ++=...++.||+||++|.---
T Consensus 136 ~aPyD~I~Vtaaa~-------------------~vP~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 136 EAPYDRIIVTAAAP-------------------EVPEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCcCEEEEeeccC-------------------CCCHHHHHhcccCCEEEEEEc
Confidence 44444222210 122345567999999998543
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.9e-08 Score=90.86 Aligned_cols=113 Identities=12% Similarity=-0.008 Sum_probs=77.8
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeec
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYS 232 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDa 232 (355)
....+..+.+.++.+|||+|||+|+.+..++... .++|+++|+++.++ ++++.. . ..++.+...|......
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~--~----~~~i~~~~~D~~~~~~ 113 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNS--D----KNKIEFEANDILKKDF 113 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcC--c----CCceEEEECCcccCCC
Confidence 4445556788999999999999999998888654 46999999999998 665554 1 2467888888643211
Q ss_pred ccCCCCCccCCccccchHHHHhhh--hHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 233 TCSLSPIQNDGVVHMSLKRIWEET--GCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 233 PCSgsG~t~~~~l~~~~~~l~~l~--~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
|- ..-++.|....+.... ..+.+|+++.++|||||+++.+..
T Consensus 114 ~~------~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 114 PE------NTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CC------CCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 10 0111333333333322 233899999999999999998754
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.3e-08 Score=91.95 Aligned_cols=107 Identities=14% Similarity=0.034 Sum_probs=74.3
Q ss_pred EechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc
Q psy7769 150 CMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG 227 (355)
Q Consensus 150 ~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da 227 (355)
+|...+......+...++.+|||+|||+|..+..++... ..|+++|+|+.++ ++++.. . ..++.+|.
T Consensus 26 ~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~~D~s~~~l~~a~~~~~--~-------~~~~~~d~ 94 (251)
T PRK10258 26 LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERG--SQVTALDLSPPMLAQARQKDA--A-------DHYLAGDI 94 (251)
T ss_pred HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCC--C-------CCEEEcCc
Confidence 466666666677766678899999999999988887653 7899999999999 555443 1 23455555
Q ss_pred ee-------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 228 SV-------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 228 ~~-------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
.. +|.-.|... +.|. .....+|.++.+.|||||.++++|-
T Consensus 95 ~~~~~~~~~fD~V~s~~~------l~~~-------~d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 95 ESLPLATATFDLAWSNLA------VQWC-------GNLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred ccCcCCCCcEEEEEECch------hhhc-------CCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 33 333332211 2222 2233789999999999999999873
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.2e-08 Score=85.83 Aligned_cols=108 Identities=12% Similarity=0.070 Sum_probs=76.3
Q ss_pred CCCCeEeeecccCcchHHHHHH-hcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCcc
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQ-TLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQN 241 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~-~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~ 241 (355)
+.+.+|||+|||+|..+..++. ....++++++|+++.++ ++++++ . .+..++++.+.|... .+.. . ..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~--~--~~~~ni~~~~~d~~~--l~~~-~--~~ 72 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAK--E--LGLDNIEFIQGDIED--LPQE-L--EE 72 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHH--H--TTSTTEEEEESBTTC--GCGC-S--ST
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccc--c--ccccccceEEeehhc--cccc-c--CC
Confidence 5688999999999999999995 44568999999999999 777776 3 455689999999865 3321 1 00
Q ss_pred CCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 242 DGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 242 ~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
.-++.+...-+......+.+++.+.++|++||.++.+.+.
T Consensus 73 ~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 73 KFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 1111111111222233337899999999999999998888
|
... |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.6e-07 Score=89.02 Aligned_cols=113 Identities=13% Similarity=0.098 Sum_probs=76.5
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecc-----------ee
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGG-----------SV 229 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da-----------~~ 229 (355)
+.++.+|||+|||+|..+..++......+|+|+|+|+..+ +++|++ . .+. .++.++..|. ..
T Consensus 119 ~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~--~--~~~~~~i~~~~~D~~~~~~~~~fD~Iv 194 (284)
T TIGR03533 119 PEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIE--R--HGLEDRVTLIQSDLFAALPGRKYDLIV 194 (284)
T ss_pred cCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH--H--cCCCCcEEEEECchhhccCCCCccEEE
Confidence 4556799999999999999999887668999999999999 888887 3 233 3566666554 33
Q ss_pred eecccCCCCCccC--CccccchHHHH----hhhhHH-HHHHHHHhhccCCcEEEEEeC
Q psy7769 230 VYSTCSLSPIQND--GVVHMSLKRIW----EETGCE-IEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 230 lDaPCSgsG~t~~--~~l~~~~~~l~----~l~~lQ-~lL~~A~~~LkpGG~lVYsTC 280 (355)
.|||+...+.... ..+++.+.... .-..+. .++..+.++|+|||++++-+.
T Consensus 195 ~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 195 SNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred ECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 7788744331000 00112221110 011233 899999999999999987655
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-07 Score=94.95 Aligned_cols=125 Identities=16% Similarity=0.162 Sum_probs=87.8
Q ss_pred EEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEec
Q psy7769 149 YCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVG 226 (355)
Q Consensus 149 ~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~D 226 (355)
|++|..-.+ ..+....+..+||+|||+|..++++|...+...++|+|+++.++ +.+++. . .+..|+.++++|
T Consensus 107 ~~~d~~~~~--~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~--~--~gL~NV~~i~~D 180 (390)
T PRK14121 107 YILDIDNFL--DFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIE--L--LNLKNLLIINYD 180 (390)
T ss_pred ccCCHHHHH--HHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHH--H--cCCCcEEEEECC
Confidence 466755333 33445667899999999999999999988778999999999999 666666 3 466789999999
Q ss_pred ceeeecccCCCCCccCCc-cc----cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 227 GSVVYSTCSLSPIQNDGV-VH----MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 227 a~~lDaPCSgsG~t~~~~-l~----~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
+..+..+. ..| +.+.- +. |...+-+ +......|+.+.++|+|||.+...|.+.
T Consensus 181 A~~ll~~~-~~~-s~D~I~lnFPdPW~KkrHR-Rlv~~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 181 ARLLLELL-PSN-SVEKIFVHFPVPWDKKPHR-RVISEDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred HHHhhhhC-CCC-ceeEEEEeCCCCccccchh-hccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence 86532211 111 11211 11 5333221 1111289999999999999999999876
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.3e-08 Score=90.55 Aligned_cols=120 Identities=13% Similarity=0.014 Sum_probs=78.9
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEE--------------Eeccee
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLV--------------KVGGSV 229 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~--------------~~Da~~ 229 (355)
++.+|||+|||+|..++.++......+|+++|+|+.++ +++|++ . .+. +++ ..|...
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~--~--~~~---~~~~~D~~~~l~~~~~~~fDlVv 158 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLA--D--AGG---TVHEGDLYDALPTALRGRVDILA 158 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH--H--cCC---EEEEeechhhcchhcCCCEeEEE
Confidence 34589999999999999999876556899999999999 788886 2 121 122 235555
Q ss_pred eecccCCCCCccCC---ccc-cchH-HH---HhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 230 VYSTCSLSPIQNDG---VVH-MSLK-RI---WEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 230 lDaPCSgsG~t~~~---~l~-~~~~-~l---~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
+||||...+ .... ..+ +.+. .+ ......+ +++..|.++|+|||.+++.+..- +-+. |...+++
T Consensus 159 ~NPPy~~~~-~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~---~~~~-v~~~l~~ 230 (251)
T TIGR03704 159 ANAPYVPTD-AIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER---QAPL-AVEAFAR 230 (251)
T ss_pred ECCCCCCch-hhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc---hHHH-HHHHHHH
Confidence 999997655 2111 111 1111 11 1112334 89999999999999999987642 3334 4444543
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.5e-07 Score=83.29 Aligned_cols=98 Identities=21% Similarity=0.237 Sum_probs=63.3
Q ss_pred hCCCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhhHHhhccccccccCcceEEEEEec--------------
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKVG-------------- 226 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rll~~~l~r~~~~~g~~~v~~~~~D-------------- 226 (355)
-.+++|++|||+|||||+.+.+++... ..++|+++|+++.+. . .++.+++.|
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~----~---------~~i~~~~~d~~~~~~~~~l~~~~ 94 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKP----I---------ENVDFIRGDFTDEEVLNKIRERV 94 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccccc----C---------CCceEEEeeCCChhHHHHHHHHh
Confidence 346789999999999999999998876 347899999998541 0 112233333
Q ss_pred ------ceeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 227 ------GSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 227 ------a~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
....|+++..+| .|...........+.+|..++++|+|||+++...
T Consensus 95 ~~~~~D~V~~~~~~~~~g-------~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 95 GDDKVDVVMSDAAPNISG-------YWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred CCCCccEEEcCCCCCCCC-------CccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 222333221122 1333222222222388999999999999999864
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.6e-08 Score=97.76 Aligned_cols=94 Identities=17% Similarity=0.114 Sum_probs=69.2
Q ss_pred HhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc----------
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG---------- 227 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da---------- 227 (355)
..+++.+|++|||+|||+|..++.+|... .+|+|+|+|+.++ +++|++ . .+..++.+..+|+
T Consensus 291 ~~l~~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~--~--~~~~~v~~~~~d~~~~l~~~~~~ 364 (443)
T PRK13168 291 EWLDPQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENAR--R--NGLDNVTFYHANLEEDFTDQPWA 364 (443)
T ss_pred HHhcCCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHH--H--cCCCceEEEEeChHHhhhhhhhh
Confidence 34567789999999999999999999875 6899999999999 888887 3 3455677766654
Q ss_pred ------eeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 228 ------SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 228 ------~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
..+|||.+|.+ +++....+ ++| +.+||..|.-
T Consensus 365 ~~~fD~Vi~dPPr~g~~---------------------~~~~~l~~-~~~-~~ivyvSCnp 402 (443)
T PRK13168 365 LGGFDKVLLDPPRAGAA---------------------EVMQALAK-LGP-KRIVYVSCNP 402 (443)
T ss_pred cCCCCEEEECcCCcChH---------------------HHHHHHHh-cCC-CeEEEEEeCh
Confidence 23777774422 33433333 577 5799999954
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.8e-07 Score=79.30 Aligned_cols=133 Identities=14% Similarity=0.068 Sum_probs=81.4
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcce--EEEEEeccee-
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHA--LKLVKVGGSV- 229 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~--v~~~~~Da~~- 229 (355)
+.+.+..+...+|.+|||+|||.|..+..++.. ...|+++|+++..+ +++++. . .+..+ +.++..|...
T Consensus 12 ~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~--~--~~~~~~~~~~~~~d~~~~ 85 (188)
T PRK14968 12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAK--L--NNIRNNGVEVIRSDLFEP 85 (188)
T ss_pred HHHHHHhhhccCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHH--H--cCCCCcceEEEecccccc
Confidence 445555566688999999999999999999887 47999999999998 777765 2 22222 5565555422
Q ss_pred ----------eecccCCCCCccCCccccchHHHH----hhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHH
Q psy7769 230 ----------VYSTCSLSPIQNDGVVHMSLKRIW----EETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSL 295 (355)
Q Consensus 230 ----------lDaPCSgsG~t~~~~l~~~~~~l~----~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L 295 (355)
.++|....+ .....-.|...... ....++.+++.+.++|||||.+++..+++. +..-+..++
T Consensus 86 ~~~~~~d~vi~n~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~---~~~~l~~~~ 161 (188)
T PRK14968 86 FRGDKFDVILFNPPYLPTE-EEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT---GEDEVLEYL 161 (188)
T ss_pred ccccCceEEEECCCcCCCC-chhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC---CHHHHHHHH
Confidence 344431111 00000001000000 011233789999999999999999888764 223344455
Q ss_pred Hh
Q psy7769 296 KR 297 (355)
Q Consensus 296 ~~ 297 (355)
.+
T Consensus 162 ~~ 163 (188)
T PRK14968 162 EK 163 (188)
T ss_pred HH
Confidence 43
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.4e-07 Score=87.18 Aligned_cols=106 Identities=12% Similarity=0.034 Sum_probs=72.8
Q ss_pred CCCCCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccCCCC
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLSP 238 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG 238 (355)
+.++.+|||+|||+|..+..++... +.++|+++|+|+.++ +++++. . .+. .++.++.+|...++.+. ...
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~--~--~~~~~~v~~~~~d~~~~~~~~-~D~ 128 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHID--A--YKAPTPVDVIEGDIRDIAIEN-ASM 128 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHH--h--cCCCCCeEEEeCChhhCCCCC-CCE
Confidence 4578999999999999998888753 458999999999999 777776 3 232 36888888875432221 011
Q ss_pred CccCCccccchHHHHhhh--hHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 239 IQNDGVVHMSLKRIWEET--GCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 239 ~t~~~~l~~~~~~l~~l~--~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
+ +..-.+..+. ..+.+++++.+.|||||.++.+...
T Consensus 129 v-------v~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 129 V-------VLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred E-------ehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 0 0000111111 1227899999999999999998743
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.4e-07 Score=85.91 Aligned_cols=113 Identities=12% Similarity=-0.042 Sum_probs=74.2
Q ss_pred hcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeee
Q psy7769 154 ASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVY 231 (355)
Q Consensus 154 aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lD 231 (355)
.+......+.+.++.+|||+|||+|..+..+|+.+ ..|+|+|+|+.++ +++++. . .+..++.+...|....+
T Consensus 18 ~~~~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g--~~V~gvD~S~~~i~~a~~~~~--~--~~~~~v~~~~~d~~~~~ 91 (197)
T PRK11207 18 THSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAANG--FDVTAWDKNPMSIANLERIKA--A--ENLDNLHTAVVDLNNLT 91 (197)
T ss_pred ChHHHHHhcccCCCCcEEEECCCCCHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHHH--H--cCCCcceEEecChhhCC
Confidence 34455666677788899999999999999999864 6899999999999 666655 2 34455777777754332
Q ss_pred cccCCCCCccCCccccchHHHHhh--hhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 232 STCSLSPIQNDGVVHMSLKRIWEE--TGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 232 aPCSgsG~t~~~~l~~~~~~l~~l--~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
.+- . -++.|...-+..+ ..++.++..+.++|||||.+++.+
T Consensus 92 ~~~-----~--fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 92 FDG-----E--YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred cCC-----C--cCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 221 1 1111111111111 123388999999999999966543
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.6e-07 Score=94.73 Aligned_cols=115 Identities=17% Similarity=0.074 Sum_probs=77.3
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccC
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCS 235 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCS 235 (355)
.+..+.+.+|.+|||+|||+|..+..++... ..+|+++|+|+.++ ++++.. . . ..++.+...|....+.|-
T Consensus 258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~--~--~-~~~v~~~~~d~~~~~~~~- 330 (475)
T PLN02336 258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAI--G--R-KCSVEFEVADCTKKTYPD- 330 (475)
T ss_pred HHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhh--c--C-CCceEEEEcCcccCCCCC-
Confidence 4445567889999999999999998888765 46899999999999 555554 2 1 135788888864322221
Q ss_pred CCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCC
Q psy7769 236 LSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSP 284 (355)
Q Consensus 236 gsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~ 284 (355)
+ .-++.++...+......+.+|+++.++|||||+++.++-...+
T Consensus 331 --~---~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~ 374 (475)
T PLN02336 331 --N---SFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSP 374 (475)
T ss_pred --C---CEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 0 0111122222233333347899999999999999998755443
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.6e-07 Score=85.18 Aligned_cols=111 Identities=18% Similarity=0.090 Sum_probs=69.1
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhhHHhhccccccccCcceEEEEEeccee-------------
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKVGGSV------------- 229 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rll~~~l~r~~~~~g~~~v~~~~~Da~~------------- 229 (355)
+++|.+|||+|||||+.+..+++..+ .+.|+|+|+++ + . ...++.++++|...
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~------~------~~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M------D------PIVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c------c------CCCCcEEEecCCCChHHHHHHHHHhCC
Confidence 46799999999999999999998864 47999999987 1 1 11235666666543
Q ss_pred --eecccCCCCCccCCccccc----hHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHH
Q psy7769 230 --VYSTCSLSPIQNDGVVHMS----LKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLK 296 (355)
Q Consensus 230 --lDaPCSgsG~t~~~~l~~~----~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~ 296 (355)
+|.-+|... ..|. .+.......+..+|..+.++|||||+++..+ ...+...-+-..+.
T Consensus 116 ~~~D~V~S~~~------~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~---~~~~~~~~~l~~l~ 179 (209)
T PRK11188 116 SKVQVVMSDMA------PNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV---FQGEGFDEYLREIR 179 (209)
T ss_pred CCCCEEecCCC------CccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE---ecCcCHHHHHHHHH
Confidence 333333221 1111 1111111112278999999999999999865 33344333334443
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.8e-07 Score=92.61 Aligned_cols=118 Identities=14% Similarity=0.115 Sum_probs=83.7
Q ss_pred echhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce
Q psy7769 151 MDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS 228 (355)
Q Consensus 151 QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~ 228 (355)
.|.+|.+....+......+|||+|||+|..+..++...+..+|+++|+++.++ ++++++ . .+.. .++...|..
T Consensus 181 lD~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~--~--n~l~-~~~~~~D~~ 255 (342)
T PRK09489 181 LDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLA--A--NGLE-GEVFASNVF 255 (342)
T ss_pred CCHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH--H--cCCC-CEEEEcccc
Confidence 57888888887776666799999999999999999887667999999999999 777777 3 2221 244444432
Q ss_pred ----------eeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCC
Q psy7769 229 ----------VVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQ 286 (355)
Q Consensus 229 ----------~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~E 286 (355)
..++|- ++... ......+++++.+.+.|||||.+++.+.+..|-+
T Consensus 256 ~~~~~~fDlIvsNPPF-----------H~g~~--~~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~ 310 (342)
T PRK09489 256 SDIKGRFDMIISNPPF-----------HDGIQ--TSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYP 310 (342)
T ss_pred cccCCCccEEEECCCc-----------cCCcc--ccHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChH
Confidence 122221 11000 0111223899999999999999999999887755
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-07 Score=88.64 Aligned_cols=106 Identities=7% Similarity=-0.017 Sum_probs=72.6
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccCCCCCcc
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLSPIQN 241 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG~t~ 241 (355)
.++.+|||+|||+|..+..++... ..|+++|+++.++ +++++. . .+. .++.++++|...+.....+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g--~~v~~vD~s~~~l~~a~~~~~--~--~g~~~~v~~~~~d~~~l~~~~~~----- 111 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG--HQVILCDLSAEMIQRAKQAAE--A--KGVSDNMQFIHCAAQDIAQHLET----- 111 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHH--h--cCCccceEEEEcCHHHHhhhcCC-----
Confidence 457799999999999999998864 6899999999999 777776 3 233 4678888887543321210
Q ss_pred CCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 242 DGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 242 ~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
.-++.+...-+..+...+.+|..+.++|||||+++.....
T Consensus 112 ~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 112 PVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred CCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEEC
Confidence 1111122222222333347899999999999999865444
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2e-07 Score=87.92 Aligned_cols=135 Identities=14% Similarity=0.045 Sum_probs=90.7
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecc----
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGG---- 227 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da---- 227 (355)
+.|.+....+....+|||+|||.|..++.+|+...+.+|+++|+++.+. +++|++ . .+. +++.+++.|.
T Consensus 33 aiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~--l--n~l~~ri~v~~~Di~~~~ 108 (248)
T COG4123 33 AILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVA--L--NPLEERIQVIEADIKEFL 108 (248)
T ss_pred HHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHH--h--CcchhceeEehhhHHHhh
Confidence 5566666667778899999999999999999986669999999999999 888887 2 122 5677776654
Q ss_pred ----------eeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 228 ----------SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 228 ----------~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
..+.||-=-.|.....+-.....+......++++++.|.++||+||++.+. ++.|.-.-+-..+.+
T Consensus 109 ~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V----~r~erl~ei~~~l~~ 184 (248)
T COG4123 109 KALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV----HRPERLAEIIELLKS 184 (248)
T ss_pred hcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE----ecHHHHHHHHHHHHh
Confidence 336677633331100000011112222233448999999999999999884 455555555555554
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.58 E-value=3e-07 Score=84.21 Aligned_cols=107 Identities=15% Similarity=0.130 Sum_probs=74.1
Q ss_pred HHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecc
Q psy7769 156 LLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYST 233 (355)
Q Consensus 156 ~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaP 233 (355)
......+.++++++|||+|||+|..|..++... ++|+++|+++.++ ++++++ + .+..++.+...|+....++
T Consensus 68 ~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~--~--~~~~~v~~~~~d~~~~~~~ 141 (212)
T PRK00312 68 ARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLK--Q--LGLHNVSVRHGDGWKGWPA 141 (212)
T ss_pred HHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHH--H--CCCCceEEEECCcccCCCc
Confidence 444567788999999999999999999888775 5899999999998 888887 3 3556788888886421110
Q ss_pred cCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 234 CSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 234 CSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
.+ ..+.-+.+. ....+.....+.|+|||+++....
T Consensus 142 ---~~-~fD~I~~~~--------~~~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 142 ---YA-PFDRILVTA--------AAPEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred ---CC-CcCEEEEcc--------CchhhhHHHHHhcCCCcEEEEEEc
Confidence 01 111101010 011345567789999999998764
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.56 E-value=2e-07 Score=94.57 Aligned_cols=96 Identities=15% Similarity=0.081 Sum_probs=70.7
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce--------
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS-------- 228 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~-------- 228 (355)
...+.+.++++|||+|||+|..++.+|... .+|+|+|+++.++ +++|++ . .+..|++++.+|+.
T Consensus 285 ~~~l~~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~--~--~~~~nv~~~~~d~~~~l~~~~~ 358 (431)
T TIGR00479 285 LEALELQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAE--L--NGIANVEFLAGTLETVLPKQPW 358 (431)
T ss_pred HHHhccCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHH--H--hCCCceEEEeCCHHHHHHHHHh
Confidence 344567788999999999999999999865 5899999999999 888887 3 35567887776652
Q ss_pred --------eeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 229 --------VVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 229 --------~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
.+|+|..|.. .++++. +..++|+ .+||.+|..
T Consensus 359 ~~~~~D~vi~dPPr~G~~--------------------~~~l~~-l~~l~~~-~ivyvsc~p 398 (431)
T TIGR00479 359 AGQIPDVLLLDPPRKGCA--------------------AEVLRT-IIELKPE-RIVYVSCNP 398 (431)
T ss_pred cCCCCCEEEECcCCCCCC--------------------HHHHHH-HHhcCCC-EEEEEcCCH
Confidence 2677764432 034443 3347885 689999964
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.3e-07 Score=89.38 Aligned_cols=108 Identities=11% Similarity=0.055 Sum_probs=73.6
Q ss_pred CCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecc-----------eeeec
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGG-----------SVVYS 232 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da-----------~~lDa 232 (355)
+.+|||+|||+|..+..++...+..+|+|+|+|+..+ +++|++ . .+. .++.++++|. ...+|
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~--~--~~l~~~i~~~~~D~~~~l~~~~fDlIvsNP 209 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIE--R--HGLEDRVTLIESDLFAALPGRRYDLIVSNP 209 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH--H--hCCCCcEEEEECchhhhCCCCCccEEEECC
Confidence 3689999999999999999877668999999999999 888887 3 233 3466666553 33788
Q ss_pred ccCCCCCcc--CCccccchHHHH----hhhhHH-HHHHHHHhhccCCcEEEEE
Q psy7769 233 TCSLSPIQN--DGVVHMSLKRIW----EETGCE-IEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 233 PCSgsG~t~--~~~l~~~~~~l~----~l~~lQ-~lL~~A~~~LkpGG~lVYs 278 (355)
|+.+.+-.. ...+++.|.... .-..+. .+++.+.++|+|||.+++-
T Consensus 210 Pyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 210 PYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 886544100 000122221100 001223 8999999999999999874
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.2e-07 Score=83.42 Aligned_cols=124 Identities=15% Similarity=0.037 Sum_probs=80.0
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce-----------eeec
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS-----------VVYS 232 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~-----------~lDa 232 (355)
.+.+|||+|||+|..+..++...+...|+++|+++.++ +++++. . .+..++.+...|.. ..++
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~--~--~~~~~~~~~~~d~~~~~~~~~fD~Vi~np 162 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAA--R--LGLDNVTFLQSDWFEPLPGGKFDLIVSNP 162 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH--H--cCCCeEEEEECchhccCcCCceeEEEECC
Confidence 45699999999999999999877667999999999999 777776 3 24445666665542 3777
Q ss_pred ccCCCCCc--cCCccc-cchHHHH-----hhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 233 TCSLSPIQ--NDGVVH-MSLKRIW-----EETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 233 PCSgsG~t--~~~~l~-~~~~~l~-----~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
|+...+.. ....++ +.+.... .+.....++.++.++|+|||.+++.+ +. ....-+..++++
T Consensus 163 Py~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~-~~---~~~~~~~~~l~~ 231 (251)
T TIGR03534 163 PYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI-GY---DQGEAVRALFEA 231 (251)
T ss_pred CCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE-Cc---cHHHHHHHHHHh
Confidence 87554310 001111 1221111 11112278999999999999999863 22 223445555554
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.9e-07 Score=82.50 Aligned_cols=110 Identities=15% Similarity=0.113 Sum_probs=76.6
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee----
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV---- 229 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~---- 229 (355)
..+..+.+.++.+|||+|||+|..+..++..++ ..+++++|+++.++ +++++. .. ....++.+...|...
T Consensus 42 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~--~~-~~~~~~~~~~~d~~~~~~~ 118 (239)
T PRK00216 42 KTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLR--DL-GLSGNVEFVQGDAEALPFP 118 (239)
T ss_pred HHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhc--cc-ccccCeEEEecccccCCCC
Confidence 345556677889999999999999999988775 48999999999998 777765 21 012356777777643
Q ss_pred ---eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 230 ---VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 230 ---lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
+|.-+++.+ +........+|..+.++|+|||.+++.+-+.
T Consensus 119 ~~~~D~I~~~~~-------------l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 119 DNSFDAVTIAFG-------------LRNVPDIDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred CCCccEEEEecc-------------cccCCCHHHHHHHHHHhccCCcEEEEEEecC
Confidence 222221111 1122233378999999999999999876554
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.5e-07 Score=91.53 Aligned_cols=114 Identities=12% Similarity=0.092 Sum_probs=81.0
Q ss_pred echhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccC-cceEEEEEecc
Q psy7769 151 MDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLD-IHALKLVKVGG 227 (355)
Q Consensus 151 QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g-~~~v~~~~~Da 227 (355)
-|.++.+....+....+.+|||+|||+|..++.+++..+..+|+++|+|+.++ +++|++ .+... ..++.+...|+
T Consensus 213 LD~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~--~n~~~~~~~v~~~~~D~ 290 (378)
T PRK15001 213 LDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVE--TNMPEALDRCEFMINNA 290 (378)
T ss_pred cChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH--HcCcccCceEEEEEccc
Confidence 58888888888876667799999999999999999887678999999999999 778876 32111 23566666554
Q ss_pred e-----------eeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 228 S-----------VVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 228 ~-----------~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
. .++||.. .| + .+.. . ...+++..+.+.|+|||.+...+
T Consensus 291 l~~~~~~~fDlIlsNPPfh-~~-----~-~~~~-~-----ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 291 LSGVEPFRFNAVLCNPPFH-QQ-----H-ALTD-N-----VAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cccCCCCCEEEEEECcCcc-cC-----c-cCCH-H-----HHHHHHHHHHHhcccCCEEEEEE
Confidence 2 1333331 00 0 0111 1 11288999999999999999875
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.7e-07 Score=85.10 Aligned_cols=114 Identities=13% Similarity=-0.013 Sum_probs=76.2
Q ss_pred hCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEec-----------ce
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVG-----------GS 228 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~D-----------a~ 228 (355)
+...++.+|||+|||+|..+..++...+...|+++|+++.++ +++|+. . ....++.++..| ..
T Consensus 104 ~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~--~--~~~~~i~~~~~d~~~~~~~~~fD~I 179 (275)
T PRK09328 104 LLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK--H--GLGARVEFLQGDWFEPLPGGRFDLI 179 (275)
T ss_pred ccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH--h--CCCCcEEEEEccccCcCCCCceeEE
Confidence 345678899999999999999999887678999999999999 777765 1 122345555444 33
Q ss_pred eeecccCCCCCcc--CCccc-cchHHH----HhhhhHH-HHHHHHHhhccCCcEEEEEe
Q psy7769 229 VVYSTCSLSPIQN--DGVVH-MSLKRI----WEETGCE-IEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 229 ~lDaPCSgsG~t~--~~~l~-~~~~~l----~~l~~lQ-~lL~~A~~~LkpGG~lVYsT 279 (355)
..++|+...+... ...++ +.+... ....... .++.++.++|+|||.+++.+
T Consensus 180 v~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 180 VSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred EECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 4788886544210 11111 221110 0111233 89999999999999999854
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.3e-07 Score=86.76 Aligned_cols=121 Identities=10% Similarity=0.032 Sum_probs=83.5
Q ss_pred HHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeec
Q psy7769 156 LLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYS 232 (355)
Q Consensus 156 ~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDa 232 (355)
..++..++..++.+|||+|||+|..+..+++..+..+++++|. +..+ +++++. . .+. ++++++.+|+...+.
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~--~--~gl~~rv~~~~~d~~~~~~ 213 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAA--E--KGVADRMRGIAVDIYKESY 213 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHH--h--CCccceEEEEecCccCCCC
Confidence 3445566778899999999999999999999887789999997 5667 777777 3 233 468899999764333
Q ss_pred ccCCCCCccCCccc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCH
Q psy7769 233 TCSLSPIQNDGVVH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQND 288 (355)
Q Consensus 233 PCSgsG~t~~~~l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE 288 (355)
|- +..+...+-++ |..+... ++|+++.+.|+|||+++.....+...++.
T Consensus 214 ~~-~D~v~~~~~lh~~~~~~~~------~il~~~~~~L~pgG~l~i~d~~~~~~~~~ 263 (306)
T TIGR02716 214 PE-ADAVLFCRILYSANEQLST------IMCKKAFDAMRSGGRLLILDMVIDDPENP 263 (306)
T ss_pred CC-CCEEEeEhhhhcCChHHHH------HHHHHHHHhcCCCCEEEEEEeccCCCCCc
Confidence 31 11110000011 4333211 78999999999999999887666554443
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.9e-07 Score=85.90 Aligned_cols=102 Identities=11% Similarity=-0.072 Sum_probs=67.9
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCC
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSL 236 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSg 236 (355)
...+.+.++.+|||+|||+|..+..++...+.++|+++|+|+.++ ++++ ++.+...|+..+. +-
T Consensus 22 l~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~d~~~~~-~~-- 87 (255)
T PRK14103 22 LARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----------GVDARTGDVRDWK-PK-- 87 (255)
T ss_pred HHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----------CCcEEEcChhhCC-CC--
Confidence 455667789999999999999999999876567999999999998 3221 2356666654321 10
Q ss_pred CCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE
Q psy7769 237 SPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 237 sG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs 278 (355)
+ . -++.+...-+..+.....+++++.+.|||||.++.+
T Consensus 88 -~-~--fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 88 -P-D--TDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred -C-C--ceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 1 1 111111111122222237899999999999999986
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.6e-07 Score=84.54 Aligned_cols=108 Identities=14% Similarity=-0.003 Sum_probs=72.5
Q ss_pred CCCCCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCC
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPI 239 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~ 239 (355)
+.++.+|||++||+|..+..+++.. ..++|+++|+++.++ ++++++ .+ ....++.++.+|...++.+- ...+
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~--~~-~~~~~v~~~~~d~~~~~~~~-~d~v 126 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIA--AY-HSEIPVEILCNDIRHVEIKN-ASMV 126 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHH--hc-CCCCCeEEEECChhhCCCCC-CCEE
Confidence 3578899999999999999998865 357899999999999 777776 31 11246788888876533221 1110
Q ss_pred ccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 240 QNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 240 t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
.....++|-+. ...+.+++++.+.|||||.++.+.-
T Consensus 127 ~~~~~l~~~~~-----~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 127 ILNFTLQFLPP-----EDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred eeecchhhCCH-----HHHHHHHHHHHHhcCCCeEEEEeec
Confidence 00000122111 1122789999999999999999853
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.9e-07 Score=88.71 Aligned_cols=98 Identities=15% Similarity=0.052 Sum_probs=71.9
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee------
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------ 229 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------ 229 (355)
...+++++|++|||+|||+|..+..+++..+ .+.|+++|+++.++ ++++++ . .+..++.++.+|+..
T Consensus 73 l~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~--~--~g~~nV~~i~gD~~~~~~~~~ 148 (322)
T PRK13943 73 MEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVR--R--LGIENVIFVCGDGYYGVPEFA 148 (322)
T ss_pred HHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHH--H--cCCCcEEEEeCChhhcccccC
Confidence 3455788999999999999999999998765 37899999999999 777877 3 456678888888643
Q ss_pred -eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 230 -VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 230 -lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
.|.--+..| ...+...+++.|+|||+++...
T Consensus 149 ~fD~Ii~~~g-------------------~~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 149 PYDVIFVTVG-------------------VDEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CccEEEECCc-------------------hHHhHHHHHHhcCCCCEEEEEe
Confidence 122111111 1134456778999999988754
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.2e-06 Score=80.39 Aligned_cols=115 Identities=21% Similarity=0.161 Sum_probs=75.7
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhhHHhhccccccccCcceEEEEEeccee-------------
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKVGGSV------------- 229 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rll~~~l~r~~~~~g~~~v~~~~~Da~~------------- 229 (355)
+++|+.|+|+||||||++..+++.+. .++|+|+|+.+-.. +.+|.++++|.+.
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-------------~~~V~~iq~d~~~~~~~~~l~~~l~~ 109 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-------------IPGVIFLQGDITDEDTLEKLLEALGG 109 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-------------CCCceEEeeeccCccHHHHHHHHcCC
Confidence 46899999999999999999988764 47799999988332 2335666666543
Q ss_pred --eecccCCCCCccCCc-cccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 230 --VYSTCSLSPIQNDGV-VHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 230 --lDaPCSgsG~t~~~~-l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
+|...|-.- +.. -.|+.+.... ..+- ..+.-|...|+|||.+|-. ...-++++.+-+.++++
T Consensus 110 ~~~DvV~sD~a---p~~~g~~~~Dh~r~-~~L~~~a~~~a~~vL~~~G~fv~K---~fqg~~~~~~l~~~~~~ 175 (205)
T COG0293 110 APVDVVLSDMA---PNTSGNRSVDHARS-MYLCELALEFALEVLKPGGSFVAK---VFQGEDFEDLLKALRRL 175 (205)
T ss_pred CCcceEEecCC---CCcCCCccccHHHH-HHHHHHHHHHHHHeeCCCCeEEEE---EEeCCCHHHHHHHHHHh
Confidence 344443211 000 1133332222 1222 7788899999999999854 45567777777777765
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=98.49 E-value=3e-07 Score=90.27 Aligned_cols=107 Identities=13% Similarity=-0.102 Sum_probs=72.8
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCc
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQ 240 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t 240 (355)
.+.+|.+|||+|||.|..+..++... +.|+++|.++.++ ++.+.. .. ....++.+++.|+..+..+- +
T Consensus 128 ~~~~g~~ILDIGCG~G~~s~~La~~g--~~V~GID~s~~~i~~Ar~~~~--~~-~~~~~i~~~~~dae~l~~~~---~-- 197 (322)
T PLN02396 128 KPFEGLKFIDIGCGGGLLSEPLARMG--ATVTGVDAVDKNVKIARLHAD--MD-PVTSTIEYLCTTAEKLADEG---R-- 197 (322)
T ss_pred cCCCCCEEEEeeCCCCHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHH--hc-CcccceeEEecCHHHhhhcc---C--
Confidence 35678899999999999998888753 6899999999999 555544 10 11246788887764321110 0
Q ss_pred cCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 241 NDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 241 ~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
.-++.+.-.-+..+.....+|+...++|||||.++.+|-
T Consensus 198 -~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~ 236 (322)
T PLN02396 198 -KFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTI 236 (322)
T ss_pred -CCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 011112233344455555889999999999999999873
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.3e-06 Score=82.35 Aligned_cols=118 Identities=16% Similarity=0.021 Sum_probs=74.7
Q ss_pred cHHHHHhhC--CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEeccee
Q psy7769 155 SLLPVLALN--IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSV 229 (355)
Q Consensus 155 S~l~~~~L~--~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~ 229 (355)
+.+....|. +.+|.+|||+|||+|..+..++... ..+|+|+|+++.++ +++|++ . .+. ..+.+...|. .
T Consensus 106 t~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g-~~~v~giDis~~~l~~A~~n~~--~--~~~~~~~~~~~~~~-~ 179 (250)
T PRK00517 106 TRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLG-AKKVLAVDIDPQAVEAARENAE--L--NGVELNVYLPQGDL-K 179 (250)
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHH--H--cCCCceEEEccCCC-C
Confidence 444444443 5689999999999998887766543 35799999999999 788887 3 233 3344433332 1
Q ss_pred eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 230 VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 230 lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
+|.-.+... .. .+..++..+.++|||||+++.|.... +...-+...+++
T Consensus 180 fD~Vvani~----------~~------~~~~l~~~~~~~LkpgG~lilsgi~~---~~~~~v~~~l~~ 228 (250)
T PRK00517 180 ADVIVANIL----------AN------PLLELAPDLARLLKPGGRLILSGILE---EQADEVLEAYEE 228 (250)
T ss_pred cCEEEEcCc----------HH------HHHHHHHHHHHhcCCCcEEEEEECcH---hhHHHHHHHHHH
Confidence 333321111 01 12267899999999999999986543 334444445543
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.9e-07 Score=82.85 Aligned_cols=108 Identities=9% Similarity=-0.102 Sum_probs=70.0
Q ss_pred hhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-
Q psy7769 153 GASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV- 229 (355)
Q Consensus 153 ~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~- 229 (355)
..+......+.+.++.+|||+|||.|..+..+++.. ..|+|+|+++.++ ++++.. . .+.. +.+...|...
T Consensus 17 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g--~~V~~iD~s~~~l~~a~~~~~--~--~~~~-v~~~~~d~~~~ 89 (195)
T TIGR00477 17 TTHSAVREAVKTVAPCKTLDLGCGQGRNSLYLSLAG--YDVRAWDHNPASIASVLDMKA--R--ENLP-LRTDAYDINAA 89 (195)
T ss_pred CchHHHHHHhccCCCCcEEEeCCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHH--H--hCCC-ceeEeccchhc
Confidence 444455566676677899999999999999999864 6899999999999 666555 2 2332 4454455322
Q ss_pred -----eecccCCCCCccCCcccc-chHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 230 -----VYSTCSLSPIQNDGVVHM-SLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 230 -----lDaPCSgsG~t~~~~l~~-~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
.|..++..- +++ ... ....+++.+.++|||||+++..+
T Consensus 90 ~~~~~fD~I~~~~~------~~~~~~~------~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 90 ALNEDYDFIFSTVV------FMFLQAG------RVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred cccCCCCEEEEecc------cccCCHH------HHHHHHHHHHHHhCCCcEEEEEE
Confidence 222221100 111 111 12278999999999999966554
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.5e-07 Score=87.78 Aligned_cols=112 Identities=19% Similarity=0.148 Sum_probs=74.1
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecc
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYST 233 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaP 233 (355)
.....++++||++|||++||-|+.+..+|+.. +.+|+++.+|+... +++.+++ .|. ..+++...|...++.+
T Consensus 53 ~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~----~gl~~~v~v~~~D~~~~~~~ 127 (273)
T PF02353_consen 53 LLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIRE----AGLEDRVEVRLQDYRDLPGK 127 (273)
T ss_dssp HHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHC----STSSSTEEEEES-GGG---S
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHh----cCCCCceEEEEeeccccCCC
Confidence 55667789999999999999999999999985 37999999999999 8888873 344 4578888887543332
Q ss_pred cCCCCCccCCccccchHHHHhh--hhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 234 CSLSPIQNDGVVHMSLKRIWEE--TGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 234 CSgsG~t~~~~l~~~~~~l~~l--~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
- ++- ++-+.+... .+....++.+.++|||||+++.-+++.
T Consensus 128 f-------D~I--vSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 128 F-------DRI--VSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp --------SEE--EEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred C-------CEE--EEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 1 111 111223333 233478999999999999998776665
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-06 Score=84.63 Aligned_cols=113 Identities=12% Similarity=-0.039 Sum_probs=75.2
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcc-eEEEEEecc-----------eeee
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIH-ALKLVKVGG-----------SVVY 231 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~-~v~~~~~Da-----------~~lD 231 (355)
++.+|||+|||+|..++.++......+|+|+|+|+.++ +++|+++ .+.. ++.++.+|. ...+
T Consensus 114 ~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~----~~~~~~v~~~~~d~~~~~~~~~fDlIvsN 189 (284)
T TIGR00536 114 PILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEK----NQLEHRVEFIQSNLFEPLAGQKIDIIVSN 189 (284)
T ss_pred CCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----cCCCCcEEEEECchhccCcCCCccEEEEC
Confidence 33699999999999999999887668999999999999 8888873 2332 366665543 3366
Q ss_pred cccCCCCCcc-CCc-cccchHHH-H----hhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 232 STCSLSPIQN-DGV-VHMSLKRI-W----EETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 232 aPCSgsG~t~-~~~-l~~~~~~l-~----~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
||.....-.. ... +++.|... . .+.....++..+.++|+|||.+++-++..
T Consensus 190 PPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 190 PPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred CCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 6763322100 001 12222110 0 11122289999999999999999887753
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.3e-07 Score=87.26 Aligned_cols=139 Identities=13% Similarity=0.026 Sum_probs=82.7
Q ss_pred ccCCCCCCCCcceeeEEEe-chhcHHH----HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh-HHh
Q psy7769 133 SEFPSPKRGVTGVFNYYCM-DGASLLP----VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV-LAL 206 (355)
Q Consensus 133 ~~~p~~~~g~~~~~~~~~Q-D~aS~l~----~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl-l~~ 206 (355)
..+.++++|...+.+|.+- +-+|-+. ...+++.+|.+|||+|||+|..+..++... ...|+++|.|+.++ -.+
T Consensus 83 ~~l~p~~~~~~~l~~~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~ 161 (314)
T TIGR00452 83 MALMPWRKGPFELSGIKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFE 161 (314)
T ss_pred HhcCCCCCCCcccccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHH
Confidence 3455666665444444431 1223322 233467789999999999999988887654 35799999999887 222
Q ss_pred hccccccccCcceEEEEEeccee------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 207 NIRPYDTVLDIHALKLVKVGGSV------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 207 ~l~r~~~~~g~~~v~~~~~Da~~------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
.++ ++.....++.+...|... +|.-+| ..-+.........|+++.+.|||||.||.+|.
T Consensus 162 ~~~--~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s-------------~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 162 AVR--KLLDNDKRAILEPLGIEQLHELYAFDTVFS-------------MGVLYHRKSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred HHH--HHhccCCCeEEEECCHHHCCCCCCcCEEEE-------------cchhhccCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 222 100112344555444322 344432 11122222333789999999999999999987
Q ss_pred CCCCCCC
Q psy7769 281 SLSPIQN 287 (355)
Q Consensus 281 Sl~~~EN 287 (355)
.+...+|
T Consensus 227 ~i~g~~~ 233 (314)
T TIGR00452 227 VIDGDLN 233 (314)
T ss_pred EecCccc
Confidence 7655443
|
Known examples to date are restricted to the proteobacteria. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.1e-07 Score=70.94 Aligned_cols=93 Identities=12% Similarity=0.028 Sum_probs=61.5
Q ss_pred eeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccCCccccc
Q psy7769 171 LDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDGVVHMS 248 (355)
Q Consensus 171 LD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~~~l~~~ 248 (355)
||++||+|..+..+++. ....|+++|+++.++ ++++.. . . ++.+...|...+..|-. +. ++.+.
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~--~--~---~~~~~~~d~~~l~~~~~----sf--D~v~~ 66 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLK--N--E---GVSFRQGDAEDLPFPDN----SF--DVVFS 66 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTT--T--S---TEEEEESBTTSSSS-TT-----E--EEEEE
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccc--c--c---CchheeehHHhCccccc----cc--ccccc
Confidence 89999999999999988 558999999999999 666666 2 1 23477777765433310 00 01122
Q ss_pred hHHHHhhhhHHHHHHHHHhhccCCcEEEE
Q psy7769 249 LKRIWEETGCEIEIKHALKLVKVGGSVVY 277 (355)
Q Consensus 249 ~~~l~~l~~lQ~lL~~A~~~LkpGG~lVY 277 (355)
..-+......+.+++++.+.|||||++++
T Consensus 67 ~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 67 NSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp ESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 22222223344899999999999999985
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.9e-07 Score=85.88 Aligned_cols=52 Identities=19% Similarity=0.130 Sum_probs=44.7
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhcc
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
++.+|.++||+.+||+++|.||.|..++..++ .++|+|+|.++.++ +++++.
T Consensus 11 vl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~ 65 (296)
T PRK00050 11 VVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK 65 (296)
T ss_pred HHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc
Confidence 34566789999999999999999999999874 59999999999999 665554
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.1e-06 Score=88.15 Aligned_cols=105 Identities=13% Similarity=0.001 Sum_probs=73.3
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceee----
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVV---- 230 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~l---- 230 (355)
..+..+++++|++|||+|||+|+.+.++++.. ..+|+++|+|+.++ +++++. . . ++.+...|...+
T Consensus 158 ~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~--~----l-~v~~~~~D~~~l~~~f 229 (383)
T PRK11705 158 LICRKLQLKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA--G----L-PVEIRLQDYRDLNGQF 229 (383)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc--c----C-eEEEEECchhhcCCCC
Confidence 44566778999999999999999999998765 36899999999999 666665 2 1 256666665432
Q ss_pred ecccCCCCCccCCccccchHHHHhhh--hHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 231 YSTCSLSPIQNDGVVHMSLKRIWEET--GCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 231 DaPCSgsG~t~~~~l~~~~~~l~~l~--~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
|...| ..-+.... ....+++.+.++|||||+++.++.+.
T Consensus 230 D~Ivs-------------~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 230 DRIVS-------------VGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred CEEEE-------------eCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 22211 11111111 12278999999999999999976543
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.6e-06 Score=76.43 Aligned_cols=107 Identities=11% Similarity=0.063 Sum_probs=72.8
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCC-CcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-----
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYP-DYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV----- 229 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~-g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~----- 229 (355)
....+...++.+|||+|||+|..+..++..... ++++++|+++..+ +++++. ...++.+...|...
T Consensus 31 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~------~~~~i~~~~~d~~~~~~~~ 104 (223)
T TIGR01934 31 AVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE------LPLNIEFIQADAEALPFED 104 (223)
T ss_pred HHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc------cCCCceEEecchhcCCCCC
Confidence 344445668999999999999999999887754 7999999999988 555543 11245666666543
Q ss_pred --eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 230 --VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 230 --lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
+|.-.+..+ +........+|+++.++|+|||+++..+.+..
T Consensus 105 ~~~D~i~~~~~-------------~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 147 (223)
T TIGR01934 105 NSFDAVTIAFG-------------LRNVTDIQKALREMYRVLKPGGRLVILEFSKP 147 (223)
T ss_pred CcEEEEEEeee-------------eCCcccHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence 222221111 11112233789999999999999998776643
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.2e-06 Score=84.10 Aligned_cols=116 Identities=16% Similarity=0.043 Sum_probs=72.2
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhhHH-hhccccccccCcceEEEEEecceeeecccC
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLA-LNIRPYDTVLDIHALKLVKVGGSVVYSTCS 235 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rll~-~~l~r~~~~~g~~~v~~~~~Da~~lDaPCS 235 (355)
.+...+.+.+|.+|||+|||+|..+..++... ...|+++|.|+.++.+ +... .+.....++.+...|...+..+-
T Consensus 113 ~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g-~~~V~GiD~S~~~l~q~~a~~--~~~~~~~~i~~~~~d~e~lp~~~- 188 (322)
T PRK15068 113 RVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAG-AKLVVGIDPSQLFLCQFEAVR--KLLGNDQRAHLLPLGIEQLPALK- 188 (322)
T ss_pred HHHHhhCCCCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHH--HhcCCCCCeEEEeCCHHHCCCcC-
Confidence 33445666789999999999999999998874 3579999999987721 1111 10011245777777754332110
Q ss_pred CCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 236 LSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 236 gsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
. .++.++...+........+|+++.+.|+|||.+|.+|-.+
T Consensus 189 ----~--FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i 229 (322)
T PRK15068 189 ----A--FDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVI 229 (322)
T ss_pred ----C--cCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEe
Confidence 0 0111111112222233378999999999999999987543
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.2e-06 Score=87.04 Aligned_cols=60 Identities=15% Similarity=0.048 Sum_probs=45.1
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEe
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKV 225 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~ 225 (355)
..++++.++ .|||++||.|..|+.+|... .+|+|+|+++..+ +++|++ . .++.|+++...
T Consensus 190 ~~~l~~~~~-~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~--~--N~i~n~~f~~~ 251 (352)
T PF05958_consen 190 LEWLDLSKG-DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAK--L--NGIDNVEFIRG 251 (352)
T ss_dssp HHHCTT-TT-EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHH--H--TT--SEEEEE-
T ss_pred HHHhhcCCC-cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHH--H--cCCCcceEEEe
Confidence 344566666 89999999999999999876 6899999999999 889988 3 46778888754
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.5e-06 Score=81.98 Aligned_cols=115 Identities=16% Similarity=0.079 Sum_probs=83.5
Q ss_pred HHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcc-eEEEEEecceeeec
Q psy7769 156 LLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIH-ALKLVKVGGSVVYS 232 (355)
Q Consensus 156 ~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~-~v~~~~~Da~~lDa 232 (355)
-+.+.-|+++||++|||++||-|+.+..+|+.. ..+|+++++|++.. ++++++ . .|.. ++++...|-+.++-
T Consensus 62 ~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~--~--~gl~~~v~v~l~d~rd~~e 136 (283)
T COG2230 62 DLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIA--A--RGLEDNVEVRLQDYRDFEE 136 (283)
T ss_pred HHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHH--H--cCCCcccEEEecccccccc
Confidence 355667789999999999999999999999886 48999999999999 777777 3 4554 78887777655333
Q ss_pred ccCCCCCccCCccccchHHHHhhhh--HHHHHHHHHhhccCCcEEEEEeCCCCC
Q psy7769 233 TCSLSPIQNDGVVHMSLKRIWEETG--CEIEIKHALKLVKVGGSVVYSTCSLSP 284 (355)
Q Consensus 233 PCSgsG~t~~~~l~~~~~~l~~l~~--lQ~lL~~A~~~LkpGG~lVYsTCSl~~ 284 (355)
+. |+- -+-+.++.... ....++.+.+.|+|||+++.-|=+-..
T Consensus 137 ~f-------DrI--vSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 137 PF-------DRI--VSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred cc-------cee--eehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 31 111 01122333333 227899999999999999987665544
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.31 E-value=3e-06 Score=82.25 Aligned_cols=113 Identities=12% Similarity=0.043 Sum_probs=70.9
Q ss_pred CCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-eecccCCCCCc
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV-VYSTCSLSPIQ 240 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~-lDaPCSgsG~t 240 (355)
.++.+|||+|||+|.||..+++.+. ..+++++|+|+.++ +++++.+ . .++ -++..+++|... ++.+... . .
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~-~-~p~-~~v~~i~gD~~~~~~~~~~~-~-~ 136 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAA-D-YPQ-LEVHGICADFTQPLALPPEP-A-A 136 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHh-h-CCC-ceEEEEEEcccchhhhhccc-c-c
Confidence 4678999999999999999998764 47899999999999 6666651 1 112 246677888654 2222110 0 0
Q ss_pred cCCccccchHHHHhhh--hHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 241 NDGVVHMSLKRIWEET--GCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 241 ~~~~l~~~~~~l~~l~--~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
.+..+.|.-..+..+. ....+|+.+.+.|+|||.++...=+.
T Consensus 137 ~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~ 180 (301)
T TIGR03438 137 GRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred CCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence 0110111100011111 12278999999999999999865444
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.31 E-value=9.1e-07 Score=81.27 Aligned_cols=99 Identities=22% Similarity=0.204 Sum_probs=64.0
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccCCCCCc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLSPIQ 240 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG~t 240 (355)
.++|+.|+||+||-|..++.+|.......|+|+|+++..+ |++|++ . .+. ..+.++++|+..+-... .
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~--l--Nkv~~~i~~~~~D~~~~~~~~-----~ 169 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIR--L--NKVENRIEVINGDAREFLPEG-----K 169 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHH--H--TT-TTTEEEEES-GGG---TT------
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHH--H--cCCCCeEEEEcCCHHHhcCcc-----c
Confidence 6789999999999999999999865557899999999999 999998 3 233 45788899986522111 1
Q ss_pred cCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEE
Q psy7769 241 NDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVY 277 (355)
Q Consensus 241 ~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVY 277 (355)
.++-+.--|.... +.|..|..++++||.+-|
T Consensus 170 ~drvim~lp~~~~------~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 170 FDRVIMNLPESSL------EFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp EEEEEE--TSSGG------GGHHHHHHHEEEEEEEEE
T ss_pred cCEEEECChHHHH------HHHHHHHHHhcCCcEEEC
Confidence 1211110010000 458899999999999987
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.2e-06 Score=85.78 Aligned_cols=118 Identities=14% Similarity=-0.019 Sum_probs=77.5
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh-HHhhccccccccCcceEEEEEecceeeecc
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV-LALNIRPYDTVLDIHALKLVKVGGSVVYST 233 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl-l~~~l~r~~~~~g~~~v~~~~~Da~~lDaP 233 (355)
.......+.+.++.+|||+|||+|..+..++... .+|+|+|+++.++ ...... . ...++.+++.|+...+.|
T Consensus 26 ~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~--~---~~~~i~~~~~d~~~~~~~ 98 (475)
T PLN02336 26 RPEILSLLPPYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESIN--G---HYKNVKFMCADVTSPDLN 98 (475)
T ss_pred hhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHh--c---cCCceEEEEecccccccC
Confidence 3444556667788899999999999999999874 6899999999998 322222 1 235678888887543333
Q ss_pred cCCCCCccCCccccchHHHHhhhh--HHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 234 CSLSPIQNDGVVHMSLKRIWEETG--CEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 234 CSgsG~t~~~~l~~~~~~l~~l~~--lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
... ..-++.|...-+..+.. +.++|.++.+.|||||.+++...++.
T Consensus 99 ~~~----~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~ 146 (475)
T PLN02336 99 ISD----GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFH 146 (475)
T ss_pred CCC----CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCC
Confidence 310 01112222222222222 23789999999999999998754443
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.4e-06 Score=81.36 Aligned_cols=126 Identities=15% Similarity=0.023 Sum_probs=76.9
Q ss_pred hhcHHHHHhhC--CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcc-eEEEEEecc
Q psy7769 153 GASLLPVLALN--IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIH-ALKLVKVGG 227 (355)
Q Consensus 153 ~aS~l~~~~L~--~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~-~v~~~~~Da 227 (355)
+...++..+|. ..+|.+|||+|||+|..+..++... ..+|+|+|+++.++ +++|+. . .+.. .+.+...|.
T Consensus 144 ~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~--~--n~~~~~~~~~~~~~ 218 (288)
T TIGR00406 144 PTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAE--L--NQVSDRLQVKLIYL 218 (288)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHH--H--cCCCcceEEEeccc
Confidence 55556555553 5689999999999999888777653 46899999999999 788877 3 2322 234443331
Q ss_pred eeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 228 SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 228 ~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
. +.+ ...-++.+..- + ...+.+++.++.++|||||+++.|.... +....|..++++
T Consensus 219 ~--~~~------~~~fDlVvan~-~--~~~l~~ll~~~~~~LkpgG~li~sgi~~---~~~~~v~~~~~~ 274 (288)
T TIGR00406 219 E--QPI------EGKADVIVANI-L--AEVIKELYPQFSRLVKPGGWLILSGILE---TQAQSVCDAYEQ 274 (288)
T ss_pred c--ccc------CCCceEEEEec-C--HHHHHHHHHHHHHHcCCCcEEEEEeCcH---hHHHHHHHHHHc
Confidence 1 000 00011111000 0 0112278899999999999999987542 334444555543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.7e-06 Score=82.15 Aligned_cols=118 Identities=14% Similarity=0.023 Sum_probs=86.1
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEE-
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVK- 224 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~- 224 (355)
+---|.+|.+.+.-|...++.+|||+|||-|-.++.+|+..+..+|+.+|++...+ .++|++ . .+.++..+..
T Consensus 140 ~~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~--~--N~~~~~~v~~s 215 (300)
T COG2813 140 RDKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLA--A--NGVENTEVWAS 215 (300)
T ss_pred CCCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHH--H--cCCCccEEEEe
Confidence 33469999999999998888899999999999999999988779999999999999 888887 3 2333322222
Q ss_pred ---------ecceeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 225 ---------VGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 225 ---------~Da~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
+|.....||.. -| .-....--|+|+..|.+.|++||.|-...=..
T Consensus 216 ~~~~~v~~kfd~IisNPPfh-~G------------~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~ 269 (300)
T COG2813 216 NLYEPVEGKFDLIISNPPFH-AG------------KAVVHSLAQEIIAAAARHLKPGGELWIVANRH 269 (300)
T ss_pred cccccccccccEEEeCCCcc-CC------------cchhHHHHHHHHHHHHHhhccCCEEEEEEcCC
Confidence 33344555642 11 11111112289999999999999988765533
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.9e-06 Score=87.64 Aligned_cols=106 Identities=19% Similarity=0.135 Sum_probs=78.7
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc--------
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG-------- 227 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da-------- 227 (355)
+...++..++++|||+-||-|++|+++|... .+|+++|+++..+ +++|++ . .+..|+.+..+|+
T Consensus 285 a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~--~~V~gvEi~~~aV~~A~~NA~--~--n~i~N~~f~~~~ae~~~~~~~ 358 (432)
T COG2265 285 ALEWLELAGGERVLDLYCGVGTFGLPLAKRV--KKVHGVEISPEAVEAAQENAA--A--NGIDNVEFIAGDAEEFTPAWW 358 (432)
T ss_pred HHHHHhhcCCCEEEEeccCCChhhhhhcccC--CEEEEEecCHHHHHHHHHHHH--H--cCCCcEEEEeCCHHHHhhhcc
Confidence 3455667889999999999999999999665 7999999999999 899998 4 5677787765544
Q ss_pred -------eeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 228 -------SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 228 -------~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
..||||=+|.+- ++++...+ ++| -+|||..| |..-..+-++.
T Consensus 359 ~~~~~d~VvvDPPR~G~~~--------------------~~lk~l~~-~~p-~~IvYVSC------NP~TlaRDl~~ 407 (432)
T COG2265 359 EGYKPDVVVVDPPRAGADR--------------------EVLKQLAK-LKP-KRIVYVSC------NPATLARDLAI 407 (432)
T ss_pred ccCCCCEEEECCCCCCCCH--------------------HHHHHHHh-cCC-CcEEEEeC------CHHHHHHHHHH
Confidence 349999877661 33444444 455 38999999 44555544443
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.6e-06 Score=77.03 Aligned_cols=101 Identities=13% Similarity=0.031 Sum_probs=67.3
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccC
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQND 242 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~ 242 (355)
..+.+|||+|||+|..+..++..+...+++++|+++.++ +++++. .++.++..|......+- ..
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--------~~~~~~~~d~~~~~~~~------~~ 98 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--------ENVQFICGDAEKLPLED------SS 98 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--------CCCeEEecchhhCCCCC------Cc
Confidence 345799999999999999999887678899999999988 444433 24566666654322110 00
Q ss_pred CccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 243 GVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 243 ~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
-++.+...-+........+|.++.++|+|||.+++++
T Consensus 99 fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 99 FDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred eeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 0111111112222233478999999999999999875
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.4e-06 Score=76.18 Aligned_cols=101 Identities=13% Similarity=0.012 Sum_probs=70.5
Q ss_pred eEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccCCCCCccCCcc
Q psy7769 169 TVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLSPIQNDGVV 245 (355)
Q Consensus 169 ~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG~t~~~~l 245 (355)
+|||+|||.|+.+..+++..+...|+++|+|+..+ +++++. . .+. .++.+...|.... |.. + . -++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~--~--~gl~~~i~~~~~d~~~~--~~~--~-~--fD~ 70 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIR--A--LGLQGRIRIFYRDSAKD--PFP--D-T--YDL 70 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH--h--cCCCcceEEEecccccC--CCC--C-C--CCE
Confidence 79999999999999999877557899999999998 777776 2 233 4577877776322 221 1 1 112
Q ss_pred ccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 246 HMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 246 ~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
.+...-+........+++.+.++|||||.++.++.
T Consensus 71 I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 71 VFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred eehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 22333333333333889999999999999998764
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.6e-06 Score=83.74 Aligned_cols=106 Identities=16% Similarity=0.089 Sum_probs=76.4
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEE------------
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVK------------ 224 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~------------ 224 (355)
+-+..+++|+.|||=.||+||....+.-++ .+++++|++..|+ ++.|++ .| ++....+..
T Consensus 190 VNLa~v~~G~~vlDPFcGTGgiLiEagl~G--~~viG~Did~~mv~gak~Nl~--~y--~i~~~~~~~~~Da~~lpl~~~ 263 (347)
T COG1041 190 VNLARVKRGELVLDPFCGTGGILIEAGLMG--ARVIGSDIDERMVRGAKINLE--YY--GIEDYPVLKVLDATNLPLRDN 263 (347)
T ss_pred HHHhccccCCEeecCcCCccHHHHhhhhcC--ceEeecchHHHHHhhhhhhhh--hh--CcCceeEEEecccccCCCCCC
Confidence 445568999999999999999887776665 8999999999999 999999 43 333333333
Q ss_pred -ecceeeecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeC
Q psy7769 225 -VGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 225 -~Da~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTC 280 (355)
.|+...|||- |. .. ... ...+..|- +.|+.+.+.||+||++||.+-
T Consensus 264 ~vdaIatDPPY---Gr---st-~~~---~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 264 SVDAIATDPPY---GR---ST-KIK---GEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ccceEEecCCC---Cc---cc-ccc---cccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 3444477775 21 11 001 11133455 899999999999999999876
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.5e-06 Score=76.41 Aligned_cols=119 Identities=14% Similarity=0.125 Sum_probs=79.2
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEeccee-
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSV- 229 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~- 229 (355)
.++...++...++.+|||+|+|.|.-++.++..+. .|+|+++|+++.++ +++|++ . .|. .+++++.+|+..
T Consensus 57 g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~--~--~gl~~~i~~~~gda~~~ 132 (234)
T PLN02781 57 GLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIK--K--AGVDHKINFIQSDALSA 132 (234)
T ss_pred HHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH--H--cCCCCcEEEEEccHHHH
Confidence 34445555666788999999999999999988654 58999999999999 889998 3 344 568899998854
Q ss_pred eecccCCCCCccCCcccc-chHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 230 VYSTCSLSPIQNDGVVHM-SLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 230 lDaPCSgsG~t~~~~l~~-~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
++--++... ...-++.| ...+ ......+..++++|+|||.|+.-.+-+
T Consensus 133 L~~l~~~~~-~~~fD~VfiDa~k----~~y~~~~~~~~~ll~~GG~ii~dn~l~ 181 (234)
T PLN02781 133 LDQLLNNDP-KPEFDFAFVDADK----PNYVHFHEQLLKLVKVGGIIAFDNTLW 181 (234)
T ss_pred HHHHHhCCC-CCCCCEEEECCCH----HHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence 111111000 00111111 1110 112277899999999999999765543
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.9e-06 Score=87.95 Aligned_cols=114 Identities=14% Similarity=0.081 Sum_probs=75.1
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-------
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------- 229 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------- 229 (355)
...++..+|.+|||+|||+|..+..+++..+.+.|+|+|+|+.++ ++++.. . .+ .++.++.+|+..
T Consensus 411 ~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~--~--~g-~~ie~I~gDa~dLp~~fed 485 (677)
T PRK06922 411 RIILDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQ--N--EG-RSWNVIKGDAINLSSSFEK 485 (677)
T ss_pred HHHhhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhh--h--cC-CCeEEEEcchHhCccccCC
Confidence 344556678999999999999888888877678999999999999 666655 2 12 356777777643
Q ss_pred --eecccCCCCCccCCccccc----h--HHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 230 --VYSTCSLSPIQNDGVVHMS----L--KRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 230 --lDaPCSgsG~t~~~~l~~~----~--~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
+|.-.+... ++|- + ..-.....+.++|+++++.|||||+++...-++.
T Consensus 486 eSFDvVVsn~v------LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~ 541 (677)
T PRK06922 486 ESVDTIVYSSI------LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMT 541 (677)
T ss_pred CCEEEEEEchH------HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccC
Confidence 222221110 1100 0 0000112233899999999999999999754443
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.26 E-value=3e-06 Score=84.73 Aligned_cols=92 Identities=12% Similarity=0.049 Sum_probs=65.4
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc-------------
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG------------- 227 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da------------- 227 (355)
+..++.+|||++||.|..++.+|... ..|+|+|+++..+ +++|++ . .+..++.+...|+
T Consensus 230 ~~~~~~~vLDL~cG~G~~~l~la~~~--~~v~~vE~~~~av~~a~~N~~--~--~~~~~~~~~~~d~~~~~~~~~~~~D~ 303 (374)
T TIGR02085 230 REIPVTQMWDLFCGVGGFGLHCAGPD--TQLTGIEIESEAIACAQQSAQ--M--LGLDNLSFAALDSAKFATAQMSAPEL 303 (374)
T ss_pred HhcCCCEEEEccCCccHHHHHHhhcC--CeEEEEECCHHHHHHHHHHHH--H--cCCCcEEEEECCHHHHHHhcCCCCCE
Confidence 34567899999999999999998653 6899999999999 888887 3 3455677766654
Q ss_pred eeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 228 SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 228 ~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
..+|||=.|.+ + +++.... .++| +.+||+.|.-
T Consensus 304 vi~DPPr~G~~----------~----------~~l~~l~-~~~p-~~ivyvsc~p 336 (374)
T TIGR02085 304 VLVNPPRRGIG----------K----------ELCDYLS-QMAP-KFILYSSCNA 336 (374)
T ss_pred EEECCCCCCCc----------H----------HHHHHHH-hcCC-CeEEEEEeCH
Confidence 23777753322 1 2333333 3678 4899999953
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.6e-06 Score=81.11 Aligned_cols=97 Identities=20% Similarity=0.126 Sum_probs=69.1
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEe-------cceeeecccC
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKV-------GGSVVYSTCS 235 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~-------Da~~lDaPCS 235 (355)
-+|.+|||++||-|..+..||+++ ..|+|+|.++..+ ++.... . .+.. +..... ++...|+.
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~--e--~gv~-i~y~~~~~edl~~~~~~FDvV-- 128 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHAL--E--SGVN-IDYRQATVEDLASAGGQFDVV-- 128 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhh--h--cccc-ccchhhhHHHHHhcCCCccEE--
Confidence 479999999999999999999987 8999999999999 554444 2 1211 111111 11112322
Q ss_pred CCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 236 LSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 236 gsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
-.-+-+.+..+-+.+++++.+++||||.++.||=-
T Consensus 129 -----------~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 129 -----------TCMEVLEHVPDPESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred -----------EEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccc
Confidence 22455666666668999999999999999999955
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.9e-06 Score=79.53 Aligned_cols=104 Identities=11% Similarity=-0.056 Sum_probs=66.2
Q ss_pred hhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCC
Q psy7769 161 ALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSP 238 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG 238 (355)
++...++.+|||+|||.|..+..++..+ .+|+|+|+|+.++ +++++. . .+. ++.+...|....+.+-
T Consensus 115 ~~~~~~~~~vLDlGcG~G~~~~~la~~g--~~V~avD~s~~ai~~~~~~~~--~--~~l-~v~~~~~D~~~~~~~~---- 183 (287)
T PRK12335 115 AVQTVKPGKALDLGCGQGRNSLYLALLG--FDVTAVDINQQSLENLQEIAE--K--ENL-NIRTGLYDINSASIQE---- 183 (287)
T ss_pred HhhccCCCCEEEeCCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHH--H--cCC-ceEEEEechhcccccC----
Confidence 3333344599999999999999998864 7899999999999 777766 2 233 5666666653311111
Q ss_pred CccCCccccchHHHHhh--hhHHHHHHHHHhhccCCcEEEEE
Q psy7769 239 IQNDGVVHMSLKRIWEE--TGCEIEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 239 ~t~~~~l~~~~~~l~~l--~~lQ~lL~~A~~~LkpGG~lVYs 278 (355)
.. ++.+...-+..+ ...+.+++++.+.|+|||.+++.
T Consensus 184 -~f--D~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 184 -EY--DFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred -Cc--cEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 00 111111111111 12338899999999999996653
|
|
| >KOG1270|consensus | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.9e-06 Score=80.29 Aligned_cols=99 Identities=13% Similarity=-0.080 Sum_probs=71.7
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ce----EEEEEeccee----ee
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HA----LKLVKVGGSV----VY 231 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~----v~~~~~Da~~----lD 231 (355)
.|..|.+|||++||.|-.|.+||.++ ..|+++|+++.++ +++... .. +-. .+ +.+...|+.. .|
T Consensus 86 k~~~g~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~-~d--P~~~~~~~y~l~~~~~~~E~~~~~fD 160 (282)
T KOG1270|consen 86 KPLLGMKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKK-MD--PVLEGAIAYRLEYEDTDVEGLTGKFD 160 (282)
T ss_pred cccCCceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhh-cC--chhccccceeeehhhcchhhcccccc
Confidence 44568899999999999999999987 7899999999999 555422 11 111 11 2233333221 33
Q ss_pred cccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 232 STCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 232 aPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
+.- ..+-+.+...+|+++....++|||||+++.||
T Consensus 161 aVv-------------csevleHV~dp~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 161 AVV-------------CSEVLEHVKDPQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred eee-------------eHHHHHHHhCHHHHHHHHHHHhCCCCceEeee
Confidence 331 25667787888899999999999999999998
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.9e-06 Score=83.00 Aligned_cols=95 Identities=16% Similarity=0.083 Sum_probs=66.6
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-------eecccC
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV-------VYSTCS 235 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~-------lDaPCS 235 (355)
.++.+|||+|||+|..+..+++......|+++|.++.++ ++++.. ..++.++..|+.. .|.-++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-------~~~i~~i~gD~e~lp~~~~sFDvVIs 184 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-------LKECKIIEGDAEDLPFPTDYADRYVS 184 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-------ccCCeEEeccHHhCCCCCCceeEEEE
Confidence 478899999999999998888876557899999999998 555433 1345677777643 222221
Q ss_pred CCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 236 LSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 236 gsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
...+......+.+|+++.++|||||+++...
T Consensus 185 -------------~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 185 -------------AGSIEYWPDPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred -------------cChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 1112222223378999999999999998753
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.4e-06 Score=84.67 Aligned_cols=98 Identities=19% Similarity=0.179 Sum_probs=68.8
Q ss_pred HHHHhhCCC-CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc------
Q psy7769 157 LPVLALNIR-PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG------ 227 (355)
Q Consensus 157 l~~~~L~~~-pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da------ 227 (355)
+++..+... ++.+|||++||+|..++.+|...+...|+++|+++..+ +++|++ . .+..++.+.+.|+
T Consensus 47 ~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~--~--N~~~~~~v~~~Da~~~l~~ 122 (382)
T PRK04338 47 LVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLE--L--NGLENEKVFNKDANALLHE 122 (382)
T ss_pred HHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH--H--hCCCceEEEhhhHHHHHhh
Confidence 334444433 46799999999999999998765445899999999999 888887 3 3444555555553
Q ss_pred ------eeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 228 ------SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 228 ------~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
..+||| |++. ..|..|++.+++||.|.+ ||+
T Consensus 123 ~~~fD~V~lDP~--Gs~~--------------------~~l~~al~~~~~~gilyv-SAt 159 (382)
T PRK04338 123 ERKFDVVDIDPF--GSPA--------------------PFLDSAIRSVKRGGLLCV-TAT 159 (382)
T ss_pred cCCCCEEEECCC--CCcH--------------------HHHHHHHHHhcCCCEEEE-Eec
Confidence 337776 4331 568888999999755555 454
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.5e-06 Score=83.07 Aligned_cols=103 Identities=22% Similarity=0.165 Sum_probs=76.6
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcce-EEEEEecceeeecccCCCCCc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHA-LKLVKVGGSVVYSTCSLSPIQ 240 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~-v~~~~~Da~~lDaPCSgsG~t 240 (355)
..+|++||||.||-|..|+.+|...... |+|+|+++..+ |++|++ . .+..+ +..+++|+..+.+.- | .
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A~~~L~eNi~--L--N~v~~~v~~i~gD~rev~~~~---~-~ 256 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDAVEYLKENIR--L--NKVEGRVEPILGDAREVAPEL---G-V 256 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCce-EEEEecCHHHHHHHHHHHH--h--cCccceeeEEeccHHHhhhcc---c-c
Confidence 4579999999999999999999886544 99999999999 999998 3 34444 789999998755541 1 2
Q ss_pred cCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCC
Q psy7769 241 NDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 241 ~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
.++-+.-.+. .. +.+..|.+.++.||.|.|-+-.-
T Consensus 257 aDrIim~~p~-------~a~~fl~~A~~~~k~~g~iHyy~~~~ 292 (341)
T COG2520 257 ADRIIMGLPK-------SAHEFLPLALELLKDGGIIHYYEFVP 292 (341)
T ss_pred CCEEEeCCCC-------cchhhHHHHHHHhhcCcEEEEEeccc
Confidence 3332221111 11 67889999999999999875544
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.9e-06 Score=69.57 Aligned_cols=93 Identities=11% Similarity=0.040 Sum_probs=58.7
Q ss_pred EeeecccCcchHHHHHHhc---CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccCCc
Q psy7769 170 VLDMCAAPGGKTLVALQTL---YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDGV 244 (355)
Q Consensus 170 VLD~CAgPGgKT~~la~~~---~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~~~ 244 (355)
|||+|||+|..+..++... .+.+++++|+|+.++ ++++.. . .+. ++++++.|...++.+= ..-+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~--~--~~~-~~~~~~~D~~~l~~~~------~~~D 69 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFS--E--DGP-KVRFVQADARDLPFSD------GKFD 69 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSH--H--TTT-TSEEEESCTTCHHHHS------SSEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhch--h--cCC-ceEEEECCHhHCcccC------CCee
Confidence 7999999999999999876 237999999999999 777775 2 232 5788888886532110 0000
Q ss_pred cccchHH-HHhhhhHH--HHHHHHHhhccCCc
Q psy7769 245 VHMSLKR-IWEETGCE--IEIKHALKLVKVGG 273 (355)
Q Consensus 245 l~~~~~~-l~~l~~lQ--~lL~~A~~~LkpGG 273 (355)
+.+.... +..+..-+ .++++..+++||||
T Consensus 70 ~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 70 LVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred EEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 1111101 22222222 89999999999998
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.1e-06 Score=82.98 Aligned_cols=133 Identities=13% Similarity=0.042 Sum_probs=80.6
Q ss_pred HHHHHhhC-CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc-----
Q psy7769 156 LLPVLALN-IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG----- 227 (355)
Q Consensus 156 ~l~~~~L~-~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da----- 227 (355)
.++..++. +.++.+|||+|||+|..+..++...+..+|+|+|+|+.++ +++|++ . .+. ++.++++|.
T Consensus 240 ~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~--~--~g~-rV~fi~gDl~e~~l 314 (423)
T PRK14966 240 HLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAA--D--LGA-RVEFAHGSWFDTDM 314 (423)
T ss_pred HHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH--H--cCC-cEEEEEcchhcccc
Confidence 34444443 4567799999999999999988776668999999999999 888887 3 232 466665554
Q ss_pred --------eeeecccCCCCCcc-CCc-cccchHHHH----hhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHH
Q psy7769 228 --------SVVYSTCSLSPIQN-DGV-VHMSLKRIW----EETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVH 292 (355)
Q Consensus 228 --------~~lDaPCSgsG~t~-~~~-l~~~~~~l~----~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~ 292 (355)
...+||-...+-.. ... +++.|.... .-..+- ++++.+.+.|+|||.+++-. ...+ .+-|.
T Consensus 315 ~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi---G~~Q-~e~V~ 390 (423)
T PRK14966 315 PSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH---GFDQ-GAAVR 390 (423)
T ss_pred ccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE---CccH-HHHHH
Confidence 22555543322100 000 122221110 000112 88999999999999987533 2223 34445
Q ss_pred HHHHh
Q psy7769 293 MSLKR 297 (355)
Q Consensus 293 ~~L~~ 297 (355)
.++++
T Consensus 391 ~ll~~ 395 (423)
T PRK14966 391 GVLAE 395 (423)
T ss_pred HHHHH
Confidence 55543
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.5e-05 Score=76.64 Aligned_cols=124 Identities=11% Similarity=0.047 Sum_probs=82.7
Q ss_pred echhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEec
Q psy7769 151 MDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVG 226 (355)
Q Consensus 151 QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~D 226 (355)
.....++...++......+||++|++.|.-|+.+|..++ .|+|+++|.++.+. +++|++ + .|. ++|+++.+|
T Consensus 103 ~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~--~--aGl~~~I~li~Gd 178 (278)
T PLN02476 103 SPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYE--L--AGVSHKVNVKHGL 178 (278)
T ss_pred CHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH--H--cCCCCcEEEEEcC
Confidence 344455566666666778999999999999999998764 58999999999999 889998 4 354 478898888
Q ss_pred cee-eecccCCCCCccCCccc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 227 GSV-VYSTCSLSPIQNDGVVH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 227 a~~-lDaPCSgsG~t~~~~l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
+.. +.--+ ..|....-++. .+.++ .+....++.++++|+|||.||.=..-++
T Consensus 179 A~e~L~~l~-~~~~~~~FD~VFIDa~K----~~Y~~y~e~~l~lL~~GGvIV~DNvL~~ 232 (278)
T PLN02476 179 AAESLKSMI-QNGEGSSYDFAFVDADK----RMYQDYFELLLQLVRVGGVIVMDNVLWH 232 (278)
T ss_pred HHHHHHHHH-hcccCCCCCEEEECCCH----HHHHHHHHHHHHhcCCCcEEEEecCccC
Confidence 754 11101 00000011111 11110 1122778999999999999998655443
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.17 E-value=9.3e-06 Score=73.58 Aligned_cols=109 Identities=17% Similarity=0.044 Sum_probs=76.0
Q ss_pred HhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee--------
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV-------- 229 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~-------- 229 (355)
++.+.-.|..|+|+|||+|..++..+.++ ..+|+|+|+++..+ +++|.. + ...++.++..|...
T Consensus 39 ~~~g~l~g~~V~DlG~GTG~La~ga~~lG-a~~V~~vdiD~~a~ei~r~N~~--~---l~g~v~f~~~dv~~~~~~~dtv 112 (198)
T COG2263 39 YLRGDLEGKTVLDLGAGTGILAIGAALLG-ASRVLAVDIDPEALEIARANAE--E---LLGDVEFVVADVSDFRGKFDTV 112 (198)
T ss_pred HHcCCcCCCEEEEcCCCcCHHHHHHHhcC-CcEEEEEecCHHHHHHHHHHHH--h---hCCceEEEEcchhhcCCccceE
Confidence 33355678899999999999888776654 57999999999999 888988 3 23468888887754
Q ss_pred -eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 230 -VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 230 -lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
.+||. | +.++| .++ ..|..|++. +.+||| ++..-+.+-+.++.+.
T Consensus 113 imNPPF---G-~~~rh----aDr--------~Fl~~Ale~----s~vVYs---iH~a~~~~f~~~~~~~ 158 (198)
T COG2263 113 IMNPPF---G-SQRRH----ADR--------PFLLKALEI----SDVVYS---IHKAGSRDFVEKFAAD 158 (198)
T ss_pred EECCCC---c-ccccc----CCH--------HHHHHHHHh----hheEEE---eeccccHHHHHHHHHh
Confidence 56664 3 22222 111 346677776 478885 5666677777766654
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.1e-06 Score=78.51 Aligned_cols=121 Identities=9% Similarity=0.062 Sum_probs=82.8
Q ss_pred CeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccCCc-
Q psy7769 168 DTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDGV- 244 (355)
Q Consensus 168 ~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~~~- 244 (355)
..+||+|||-|...+++|...+...++|+|++..++ +.+.+. . .+..|+.++++|+..+-.-+-..| +.++.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~--~--~~l~Nv~~~~~da~~~l~~~~~~~-~v~~i~ 93 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAE--K--RGLKNVRFLRGDARELLRRLFPPG-SVDRIY 93 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHH--H--HTTSSEEEEES-CTTHHHHHSTTT-SEEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHH--h--hcccceEEEEccHHHHHhhcccCC-chheEE
Confidence 389999999999999999998878999999999999 555565 3 477899999999876111110001 11111
Q ss_pred cc----cchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhh
Q psy7769 245 VH----MSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIW 299 (355)
Q Consensus 245 l~----~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~ 299 (355)
+. |-..+-.+.--++ ..|....+.|+|||.|...| .++....+.++...
T Consensus 94 i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T------D~~~y~~~~~~~~~ 147 (195)
T PF02390_consen 94 INFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT------DVEEYAEWMLEQFE 147 (195)
T ss_dssp EES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE------S-HHHHHHHHHHHH
T ss_pred EeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe------CCHHHHHHHHHHHH
Confidence 22 3333333333344 88999999999999999988 77788888887664
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.5e-07 Score=70.78 Aligned_cols=88 Identities=16% Similarity=0.121 Sum_probs=50.9
Q ss_pred eeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcce---EEEEEecce------eeecccCCCCC
Q psy7769 171 LDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHA---LKLVKVGGS------VVYSTCSLSPI 239 (355)
Q Consensus 171 LD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~---v~~~~~Da~------~lDaPCSgsG~ 239 (355)
||++||+|..+..+++.....+++++|+|+.++ +++++. . .+..+ +.+...|.. ..|.-.+.
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~--- 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLA--E--LGNDNFERLRFDVLDLFDYDPPESFDLVVAS--- 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHH--H--CT---EEEEE--SSS---CCC----SEEEEE---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhh--h--cCCcceeEEEeecCChhhcccccccceehhh---
Confidence 799999999999999887668999999999999 666666 2 12222 222222221 13333211
Q ss_pred ccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEE
Q psy7769 240 QNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSV 275 (355)
Q Consensus 240 t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~l 275 (355)
.-+..+..++.+|+++.++|||||.|
T Consensus 74 ----------~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 74 ----------NVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -----------TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred ----------hhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 11122233448899999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.7e-05 Score=73.74 Aligned_cols=123 Identities=19% Similarity=0.114 Sum_probs=81.4
Q ss_pred cHHHHHhh------CCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEe
Q psy7769 155 SLLPVLAL------NIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKV 225 (355)
Q Consensus 155 S~l~~~~L------~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~ 225 (355)
|-|++.++ .++||.+||-++||+|..-.|++.... .|.|+|+|.++... |-...++ -+||..+-.
T Consensus 56 SKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~------R~NIiPIl~ 129 (229)
T PF01269_consen 56 SKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK------RPNIIPILE 129 (229)
T ss_dssp -HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH------STTEEEEES
T ss_pred hHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc------CCceeeeec
Confidence 44555443 367999999999999999999999886 69999999998766 4444441 256788888
Q ss_pred ccee----------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe--CCC-CCCCCHHHHH
Q psy7769 226 GGSV----------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST--CSL-SPIQNDGVVH 292 (355)
Q Consensus 226 Da~~----------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT--CSl-~~~ENE~vV~ 292 (355)
|++. ||.-..... .++ +.+-++.+|-.+||+||.++.+. -|+ ...+.+.|.+
T Consensus 130 DAr~P~~Y~~lv~~VDvI~~DVa---------Qp~------Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~ 194 (229)
T PF01269_consen 130 DARHPEKYRMLVEMVDVIFQDVA---------QPD------QARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFA 194 (229)
T ss_dssp -TTSGGGGTTTS--EEEEEEE-S---------STT------HHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHH
T ss_pred cCCChHHhhcccccccEEEecCC---------ChH------HHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHH
Confidence 8864 333321100 011 11145778889999999988763 334 5567778877
Q ss_pred HHHHhh
Q psy7769 293 MSLKRI 298 (355)
Q Consensus 293 ~~L~~~ 298 (355)
.-.++.
T Consensus 195 ~e~~~L 200 (229)
T PF01269_consen 195 EEVKKL 200 (229)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.8e-06 Score=78.62 Aligned_cols=115 Identities=16% Similarity=0.114 Sum_probs=86.5
Q ss_pred CeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccCCc-
Q psy7769 168 DTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDGV- 244 (355)
Q Consensus 168 ~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~~~- 244 (355)
-.+|++|||.|...+++|+..+.-..+|+|+....+ +.+.+. . .++.|+.+++.||..+-.-+-.-| +.++-
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~--~--~~l~Nlri~~~DA~~~l~~~~~~~-sl~~I~ 124 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIK--E--LGLKNLRLLCGDAVEVLDYLIPDG-SLDKIY 124 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHH--H--cCCCcEEEEcCCHHHHHHhcCCCC-CeeEEE
Confidence 489999999999999999998888999999999999 555565 3 466699999999987332221111 11111
Q ss_pred cc----cchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHH
Q psy7769 245 VH----MSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHM 293 (355)
Q Consensus 245 l~----~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~ 293 (355)
+. |...+-.++--+| ..|+...+.|+|||.|.+.| .|+...++
T Consensus 125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT------D~~~y~e~ 172 (227)
T COG0220 125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT------DNEEYFEW 172 (227)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe------cCHHHHHH
Confidence 22 6555555555566 89999999999999999998 77777777
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.3e-05 Score=77.81 Aligned_cols=125 Identities=17% Similarity=0.034 Sum_probs=80.8
Q ss_pred chhcHHHHHhhC--CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcce-EEEEEec
Q psy7769 152 DGASLLPVLALN--IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHA-LKLVKVG 226 (355)
Q Consensus 152 D~aS~l~~~~L~--~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~-v~~~~~D 226 (355)
.+...++..+|+ .++|.+|||++||+|-.++.++.++ ..+|+|+|+++..+ .++|++ . .+++. +.....+
T Consensus 146 HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~--~--N~v~~~~~~~~~~ 220 (300)
T COG2264 146 HPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENAR--L--NGVELLVQAKGFL 220 (300)
T ss_pred ChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHH--H--cCCchhhhccccc
Confidence 466777777775 6799999999999999998888775 36899999999999 888888 3 23332 1111111
Q ss_pred ceeeecccCCCCCccCC-ccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHH
Q psy7769 227 GSVVYSTCSLSPIQNDG-VVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLK 296 (355)
Q Consensus 227 a~~lDaPCSgsG~t~~~-~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~ 296 (355)
. .+.+ .... ++.. ..-++..- ++...+.+++||||+++.|= +...+ +..|..++.
T Consensus 221 ~--~~~~------~~~~~DvIV----ANILA~vl~~La~~~~~~lkpgg~lIlSG--Il~~q-~~~V~~a~~ 277 (300)
T COG2264 221 L--LEVP------ENGPFDVIV----ANILAEVLVELAPDIKRLLKPGGRLILSG--ILEDQ-AESVAEAYE 277 (300)
T ss_pred c--hhhc------ccCcccEEE----ehhhHHHHHHHHHHHHHHcCCCceEEEEe--ehHhH-HHHHHHHHH
Confidence 1 1111 1100 0000 01123333 78888999999999999997 66666 444555553
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.8e-05 Score=73.24 Aligned_cols=111 Identities=7% Similarity=-0.133 Sum_probs=69.2
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccc---------cCcceEEEEEecceeeecc
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTV---------LDIHALKLVKVGGSVVYST 233 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~---------~g~~~v~~~~~Da~~lDaP 233 (355)
.+|.+|||++||.|.-+..+|+.+ -.|+|+|+|+..+ +..... ..+. ....++++..+|...+++.
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G--~~V~gvD~S~~Ai~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~ 109 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQG--HRVLGVELSEIAVEQFFAENG-LTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA 109 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCC--CeEEEEeCCHHHHHHHHHHcC-CCcceeccccceeeecCceEEEEccCCCCCcc
Confidence 578899999999999999999875 5799999999998 322111 0000 0113577888887654432
Q ss_pred cCCCCCccCCccccchHHHHhhhh-H-HHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 234 CSLSPIQNDGVVHMSLKRIWEETG-C-EIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 234 CSgsG~t~~~~l~~~~~~l~~l~~-l-Q~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
..| .. +..|...-+..+.. . .+.+....++|||||++++.|-+..
T Consensus 110 --~~~-~f--D~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~ 156 (213)
T TIGR03840 110 --DLG-PV--DAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYD 156 (213)
T ss_pred --cCC-Cc--CEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcC
Confidence 111 10 11121111111111 1 1679999999999999888777653
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >KOG2915|consensus | Back alignment and domain information |
|---|
Probab=98.10 E-value=1e-05 Score=77.01 Aligned_cols=115 Identities=19% Similarity=0.186 Sum_probs=81.7
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCc-ceEEEE
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLV 223 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~ 223 (355)
.|.-| ..++...|++.||.+||..+.|+|+.+..++..+. .|+|+.+|.+..|. +.+.++ . .++ .|+.++
T Consensus 89 ~Yt~D--ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr--~--hgi~~~vt~~ 162 (314)
T KOG2915|consen 89 LYTPD--IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFR--E--HGIGDNVTVT 162 (314)
T ss_pred Eeccc--HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHH--H--hCCCcceEEE
Confidence 45555 56888999999999999999999999999999874 59999999999999 777776 3 344 456665
Q ss_pred Eec--------------ceeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHH
Q psy7769 224 KVG--------------GSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDG 289 (355)
Q Consensus 224 ~~D--------------a~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~ 289 (355)
.-| +..+|.|- |+ +.+-+|++.||.+|. --||++|- -+
T Consensus 163 hrDVc~~GF~~ks~~aDaVFLDlPa--------------Pw---------~AiPha~~~lk~~g~---r~csFSPC--IE 214 (314)
T KOG2915|consen 163 HRDVCGSGFLIKSLKADAVFLDLPA--------------PW---------EAIPHAAKILKDEGG---RLCSFSPC--IE 214 (314)
T ss_pred EeecccCCccccccccceEEEcCCC--------------hh---------hhhhhhHHHhhhcCc---eEEeccHH--HH
Confidence 444 33344443 33 457788889988874 12444442 24
Q ss_pred HHHHHHH
Q psy7769 290 VVHMSLK 296 (355)
Q Consensus 290 vV~~~L~ 296 (355)
+|++-++
T Consensus 215 Qvqrtce 221 (314)
T KOG2915|consen 215 QVQRTCE 221 (314)
T ss_pred HHHHHHH
Confidence 5555444
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.6e-05 Score=72.78 Aligned_cols=106 Identities=14% Similarity=-0.022 Sum_probs=70.2
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccC
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQND 242 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~ 242 (355)
..+.+|||+|||+|..+..+++.. ..++++|.++.++ +++++. . .+..++.+...|+... ++...+ .
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~--~--~~~~~~~~~~~d~~~~--~~~~~~---~ 112 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAK--K--DPLLKIEYRCTSVEDL--AEKGAK---S 112 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHH--H--cCCCceEEEeCCHHHh--hcCCCC---C
Confidence 358899999999999888887754 5799999999998 666665 2 2333466666665321 111000 1
Q ss_pred CccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 243 GVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 243 ~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
.++.+...-+......+.+|..+.+.|+|||.++.++|.
T Consensus 113 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 113 FDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred ccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 112222222333334448899999999999999998874
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.07 E-value=1e-05 Score=72.19 Aligned_cols=36 Identities=33% Similarity=0.217 Sum_probs=31.0
Q ss_pred CCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCch
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLL 201 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~ 201 (355)
.+.+|||+||||||+|..+++.. ..++|+|+|+.+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 45899999999999999999876 3489999999987
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=2e-05 Score=76.48 Aligned_cols=105 Identities=12% Similarity=-0.038 Sum_probs=70.2
Q ss_pred CCCeEeeecccCcchHHHHHH--hcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccCCCCCc
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQ--TLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLSPIQ 240 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~--~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG~t 240 (355)
+..+|+|+|||||+.|+.++. ....++++++|+++.++ +++++.+ . .+. ++++|..+|+..+.. . .+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~-~--~gL~~rV~F~~~Da~~~~~-~--l~-- 194 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS-D--PDLSKRMFFHTADVMDVTE-S--LK-- 194 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh-c--cCccCCcEEEECchhhccc-c--cC--
Confidence 678999999999988776543 45668999999999999 7777742 1 344 458999998854211 1 11
Q ss_pred cCCccccchHHHHhh--hhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 241 NDGVVHMSLKRIWEE--TGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 241 ~~~~l~~~~~~l~~l--~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
+-++.|.. .+-.. ...+++|++..+.|+|||.+++-+.
T Consensus 195 -~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 195 -EYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred -CcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 11111111 11111 1222889999999999999999773
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.4e-05 Score=73.96 Aligned_cols=96 Identities=9% Similarity=0.034 Sum_probs=68.8
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCcc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQN 241 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~ 241 (355)
+.+-.+|.|++||||..|-.|++.-+.+.|+++|.|+.|+ +++++- ++.|..+|...--+.-.
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp---------~~~f~~aDl~~w~p~~~------ 92 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP---------DATFEEADLRTWKPEQP------ 92 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC---------CCceecccHhhcCCCCc------
Confidence 4566799999999999999999998889999999999999 443332 35677777654222110
Q ss_pred CCccccchHHHHhhhhHH------HHHHHHHhhccCCcEEEEEeCC
Q psy7769 242 DGVVHMSLKRIWEETGCE------IEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 242 ~~~l~~~~~~l~~l~~lQ------~lL~~A~~~LkpGG~lVYsTCS 281 (355)
.+-+...+.+| ++|.+.+..|.|||.|..----
T Consensus 93 -------~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPd 131 (257)
T COG4106 93 -------TDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPD 131 (257)
T ss_pred -------cchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCC
Confidence 01133334444 7899999999999999875433
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.7e-05 Score=71.99 Aligned_cols=114 Identities=16% Similarity=-0.006 Sum_probs=71.7
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeeccc
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTC 234 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPC 234 (355)
+....+.+.++.+|||+|||+|..+..++... ..|+++|.++..+ +++++. . .+. ++.+...|...+ +.
T Consensus 39 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~--~--~~~-~~~~~~~~~~~~--~~ 109 (233)
T PRK05134 39 YIREHAGGLFGKRVLDVGCGGGILSESMARLG--ADVTGIDASEENIEVARLHAL--E--SGL-KIDYRQTTAEEL--AA 109 (233)
T ss_pred HHHHhccCCCCCeEEEeCCCCCHHHHHHHHcC--CeEEEEcCCHHHHHHHHHHHH--H--cCC-ceEEEecCHHHh--hh
Confidence 44444456789999999999999998888764 6799999999998 666655 2 122 345554444321 11
Q ss_pred CCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 235 SLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 235 SgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
-..| . -++.+...-+........+|+.+.++|+|||+++.+++.-
T Consensus 110 ~~~~-~--fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 110 EHPG-Q--FDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred hcCC-C--ccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence 0001 1 1111111112222233378999999999999999988753
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.7e-05 Score=81.02 Aligned_cols=123 Identities=11% Similarity=0.114 Sum_probs=75.6
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecc-----------eeee
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGG-----------SVVY 231 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da-----------~~lD 231 (355)
++.+|||+|||+|..++.++......+|+|+|+|+..+ +++|++ . .+. .++.++.+|. ...+
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~--~--~~l~~~v~~~~~D~~~~~~~~~fDlIvsN 213 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAI--K--YEVTDRIQIIHSNWFENIEKQKFDFIVSN 213 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHH--H--cCCccceeeeecchhhhCcCCCccEEEEC
Confidence 45789999999999999998876668999999999999 888887 3 233 3466666553 2245
Q ss_pred cccCCCCCc--cCCc-cccchHH-HH----hhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHH
Q psy7769 232 STCSLSPIQ--NDGV-VHMSLKR-IW----EETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLK 296 (355)
Q Consensus 232 aPCSgsG~t--~~~~-l~~~~~~-l~----~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~ 296 (355)
||-....-. .... +.+.|.. +. -+..+..++..+.++|+|||.+++. +.. .+.+. |..++.
T Consensus 214 PPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE-ig~--~q~~~-v~~~~~ 282 (506)
T PRK01544 214 PPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE-IGF--KQEEA-VTQIFL 282 (506)
T ss_pred CCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE-ECC--chHHH-HHHHHH
Confidence 554322100 0000 1122211 10 0111227999999999999999874 333 33334 444444
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=7.8e-05 Score=69.41 Aligned_cols=118 Identities=14% Similarity=0.109 Sum_probs=81.3
Q ss_pred hhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEE-ecc
Q psy7769 153 GASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVK-VGG 227 (355)
Q Consensus 153 ~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~-~Da 227 (355)
..-.+...++......+||+++++.|.-|+.||..++ +|+|+++|+++++. +++|++ + .|. +.|+++. +|+
T Consensus 46 e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~--~--ag~~~~i~~~~~gda 121 (219)
T COG4122 46 ETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLA--E--AGVDDRIELLLGGDA 121 (219)
T ss_pred hHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHH--H--cCCcceEEEEecCcH
Confidence 3345666667777788999999999999999999876 79999999999999 999999 4 455 3366666 466
Q ss_pred eeeecccC-CCCCccCCcccc-chHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 228 SVVYSTCS-LSPIQNDGVVHM-SLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 228 ~~lDaPCS-gsG~t~~~~l~~-~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
.. .--. ..| +.+ +.| +.++ ....+.+..+.++|+|||.||.=.-.+.
T Consensus 122 l~--~l~~~~~~-~fD--liFIDadK----~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 122 LD--VLSRLLDG-SFD--LVFIDADK----ADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred HH--HHHhccCC-Ccc--EEEEeCCh----hhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 32 2211 111 111 111 0000 0111779999999999999997666555
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.4e-05 Score=76.14 Aligned_cols=93 Identities=15% Similarity=0.120 Sum_probs=59.7
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCC---CcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCC
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYP---DYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPI 239 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~---g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~ 239 (355)
.++.+|||+|||+|..+..++..... ..|+++|+|+.++ ++++.. ++.+..+|+..+ |.. .+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~---------~~~~~~~d~~~l--p~~-~~- 150 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP---------QVTFCVASSHRL--PFA-DQ- 150 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC---------CCeEEEeecccC--CCc-CC-
Confidence 45678999999999999999876532 3799999999998 443322 345666665432 210 00
Q ss_pred ccCCccc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 240 QNDGVVH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 240 t~~~~l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
+.+--+. +.+ ..+++..+.|||||+++..+-
T Consensus 151 sfD~I~~~~~~----------~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 151 SLDAIIRIYAP----------CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred ceeEEEEecCC----------CCHHHHHhhccCCCEEEEEeC
Confidence 0000000 111 235678889999999998764
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.99 E-value=1e-05 Score=73.33 Aligned_cols=90 Identities=16% Similarity=0.149 Sum_probs=59.0
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcc-eEEEEEecce-------------
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIH-ALKLVKVGGS------------- 228 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~-~v~~~~~Da~------------- 228 (355)
-+|.+|||+|||+|..++.++..+. .+|+.+|.++..+ +++|++. .+.. .+.++..|+.
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~----l~~~~~~~v~~~d~~~~l~~~~~~~~~f 115 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEK----LGLEDKIRVIKGDAFKFLLKLAKKGEKF 115 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHH----HT-GGGEEEEESSHHHHHHHHHHCTS-E
T ss_pred cCCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHH----hCCCcceeeeccCHHHHHHhhcccCCCc
Confidence 3789999999999999998877653 5899999999999 9999983 3443 4677766642
Q ss_pred ---eeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHH--hhccCCcEEEE
Q psy7769 229 ---VVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHAL--KLVKVGGSVVY 277 (355)
Q Consensus 229 ---~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~--~~LkpGG~lVY 277 (355)
.+|||-- .... .+++|.... .+|+++|.||.
T Consensus 116 DiIflDPPY~-------------~~~~-----~~~~l~~l~~~~~l~~~~~ii~ 151 (183)
T PF03602_consen 116 DIIFLDPPYA-------------KGLY-----YEELLELLAENNLLNEDGLIII 151 (183)
T ss_dssp EEEEE--STT-------------SCHH-----HHHHHHHHHHTTSEEEEEEEEE
T ss_pred eEEEECCCcc-------------cchH-----HHHHHHHHHHCCCCCCCEEEEE
Confidence 3888861 0100 123444444 78999877766
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.4e-05 Score=71.82 Aligned_cols=58 Identities=19% Similarity=0.110 Sum_probs=45.6
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG 227 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da 227 (355)
.+|.+|||+|||+|..++.++... .++|+++|+++..+ +++|++ . .+..++.+++.|.
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~--~--~~~~~v~~~~~D~ 111 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLA--T--LKAGNARVVNTNA 111 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHH--H--hCCCcEEEEEchH
Confidence 578899999999999998655443 37999999999998 888988 3 3455677766654
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=4.6e-05 Score=72.67 Aligned_cols=100 Identities=9% Similarity=-0.013 Sum_probs=71.2
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccC-cceEEEEEeccee------------
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLD-IHALKLVKVGGSV------------ 229 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g-~~~v~~~~~Da~~------------ 229 (355)
.++.+|||+|+|.|..+..++...+..+|+++|+++..+ +++++. . .+ .++++++.+|+..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~--~--~~~~~rv~v~~~Da~~~l~~~~~~yD~I 140 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFE--L--PENGERFEVIEADGAEYIAVHRHSTDVI 140 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcC--C--CCCCCceEEEECCHHHHHHhCCCCCCEE
Confidence 445689999999999999998877778999999999999 677665 2 22 3678888888753
Q ss_pred -eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 230 -VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 230 -lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
+|+-- +.++ +..+ ...++++.+.+.|+|||+++...++-
T Consensus 141 ~~D~~~-~~~~---------~~~l----~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 141 LVDGFD-GEGI---------IDAL----CTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred EEeCCC-CCCC---------cccc----CcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 33211 1110 0000 01278999999999999999976543
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.2e-05 Score=70.61 Aligned_cols=103 Identities=13% Similarity=-0.005 Sum_probs=66.5
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee------e
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------V 230 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------l 230 (355)
..+++.-++.++||++||.|.-++.+|+.+ -.|+|+|.|+..+ +.+..+ . .+.+ |.+...|... .
T Consensus 23 ~~a~~~~~~g~~LDlgcG~GRNalyLA~~G--~~VtAvD~s~~al~~l~~~a~--~--~~l~-i~~~~~Dl~~~~~~~~y 95 (192)
T PF03848_consen 23 LEAVPLLKPGKALDLGCGEGRNALYLASQG--FDVTAVDISPVALEKLQRLAE--E--EGLD-IRTRVADLNDFDFPEEY 95 (192)
T ss_dssp HHHCTTS-SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHH--H--TT-T-EEEEE-BGCCBS-TTTE
T ss_pred HHHHhhcCCCcEEEcCCCCcHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHh--h--cCce-eEEEEecchhccccCCc
Confidence 345555566799999999999999999986 5799999999998 655554 2 2332 6666666432 4
Q ss_pred ecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 231 YSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 231 DaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
|.-+|. ++ +.+- ....+++++++..+.++|||.+++.|
T Consensus 96 D~I~st-~v-----~~fL-----~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 96 DFIVST-VV-----FMFL-----QRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp EEEEEE-SS-----GGGS------GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CEEEEE-EE-----eccC-----CHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 444321 10 1111 11122378999999999999999955
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >KOG1271|consensus | Back alignment and domain information |
|---|
Probab=97.97 E-value=8e-06 Score=73.66 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=72.7
Q ss_pred CeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh-HHhhccccccccCcce-EEEEEeccee----------------
Q psy7769 168 DTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV-LALNIRPYDTVLDIHA-LKLVKVGGSV---------------- 229 (355)
Q Consensus 168 ~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl-l~~~l~r~~~~~g~~~-v~~~~~Da~~---------------- 229 (355)
++|||++||.|..-..|++..-++.++++|.|+..+ |.+|+.+ + -+.+| |++.+.|...
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe-~--~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT 145 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAE-R--DGFSNEIRFQQLDITDPDFLSGQFDLVLDKGT 145 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHH-h--cCCCcceeEEEeeccCCcccccceeEEeecCc
Confidence 499999999999999999887778999999999999 8888873 2 34444 7777666532
Q ss_pred eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCC
Q psy7769 230 VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQN 287 (355)
Q Consensus 230 lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~EN 287 (355)
+||.. .+++....... --+...-++|+|||++|.+.|-++..|=
T Consensus 146 ~DAis------------Ls~d~~~~r~~--~Y~d~v~~ll~~~gifvItSCN~T~dEL 189 (227)
T KOG1271|consen 146 LDAIS------------LSPDGPVGRLV--VYLDSVEKLLSPGGIFVITSCNFTKDEL 189 (227)
T ss_pred eeeee------------cCCCCccccee--eehhhHhhccCCCcEEEEEecCccHHHH
Confidence 44432 11211111101 1255667789999999999999976553
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.97 E-value=6.7e-05 Score=73.12 Aligned_cols=51 Identities=20% Similarity=0.176 Sum_probs=44.4
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
+.+|.+++|+.++|++.|-||.|..|+..+++|+|+|+|.++..+ .+++++
T Consensus 13 l~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~ 65 (305)
T TIGR00006 13 VEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLS 65 (305)
T ss_pred HHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHh
Confidence 456778999999999999999999999877569999999999999 666665
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.1e-05 Score=78.40 Aligned_cols=120 Identities=16% Similarity=0.083 Sum_probs=76.3
Q ss_pred chhcHHHHHhhC--CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcc-eEEEEE-e
Q psy7769 152 DGASLLPVLALN--IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIH-ALKLVK-V 225 (355)
Q Consensus 152 D~aS~l~~~~L~--~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~-~v~~~~-~ 225 (355)
.+...++..+|. ..+|.+|||++||+|-.++.++.++ ..+|+|+|+++..+ +++|+. . .+.. ++.+.. .
T Consensus 145 H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klG-A~~v~a~DiDp~Av~~a~~N~~--~--N~~~~~~~v~~~~ 219 (295)
T PF06325_consen 145 HPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLG-AKKVVAIDIDPLAVEAARENAE--L--NGVEDRIEVSLSE 219 (295)
T ss_dssp CHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTT-BSEEEEEESSCHHHHHHHHHHH--H--TT-TTCEEESCTS
T ss_pred CHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHH--H--cCCCeeEEEEEec
Confidence 466777777774 6789999999999999888887765 36899999999999 888887 3 2332 333311 1
Q ss_pred cce--eeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHH
Q psy7769 226 GGS--VVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMS 294 (355)
Q Consensus 226 Da~--~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~ 294 (355)
|.. ..|.-+.. ...+-+ ..++....++++|||.++.|= +..++.+.|++.+
T Consensus 220 ~~~~~~~dlvvAN----------I~~~vL------~~l~~~~~~~l~~~G~lIlSG--Il~~~~~~v~~a~ 272 (295)
T PF06325_consen 220 DLVEGKFDLVVAN----------ILADVL------LELAPDIASLLKPGGYLILSG--ILEEQEDEVIEAY 272 (295)
T ss_dssp CTCCS-EEEEEEE----------S-HHHH------HHHHHHCHHHEEEEEEEEEEE--EEGGGHHHHHHHH
T ss_pred ccccccCCEEEEC----------CCHHHH------HHHHHHHHHhhCCCCEEEEcc--ccHHHHHHHHHHH
Confidence 110 02222200 111111 167777888999999999863 4455556665544
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.94 E-value=2e-05 Score=78.92 Aligned_cols=85 Identities=9% Similarity=0.072 Sum_probs=63.9
Q ss_pred CeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce-------------eee
Q psy7769 168 DTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS-------------VVY 231 (355)
Q Consensus 168 ~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~-------------~lD 231 (355)
-+|||++||+|.-++.++... +-..|++||+++..+ +++|++ . .+..++++++.|+. .+|
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~--~--N~~~~~~v~~~Da~~~l~~~~~~fDvIdlD 121 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVE--Y--NSVENIEVPNEDAANVLRYRNRKFHVIDID 121 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHH--H--hCCCcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence 489999999999999998764 236899999999999 999997 3 34456777766654 266
Q ss_pred cccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE
Q psy7769 232 STCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 232 aPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs 278 (355)
|+ |+. . ..|..|++.++.||.|.++
T Consensus 122 Pf--Gs~-----------~---------~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 122 PF--GTP-----------A---------PFVDSAIQASAERGLLLVT 146 (374)
T ss_pred CC--CCc-----------H---------HHHHHHHHhcccCCEEEEE
Confidence 64 221 1 5688999999988766554
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.94 E-value=4e-05 Score=76.17 Aligned_cols=54 Identities=15% Similarity=0.247 Sum_probs=44.0
Q ss_pred CeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc
Q psy7769 168 DTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG 227 (355)
Q Consensus 168 ~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da 227 (355)
.+|||+|||+|..++.++... ..|+|+|+++.++ +++|++ . .++.++.++..|+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~--~--~~~~~v~~~~~d~ 254 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIA--A--NNIDNVQIIRMSA 254 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHH--H--cCCCcEEEEEcCH
Confidence 479999999999999888775 5899999999999 888887 3 3555677665554
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.5e-05 Score=76.86 Aligned_cols=55 Identities=16% Similarity=0.223 Sum_probs=43.8
Q ss_pred CCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG 227 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da 227 (355)
+.+|||+|||+|..++.++... .+|+|+|.++..+ +++|++ . .+..|+++...|+
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~--~--~~~~~v~~~~~d~ 263 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIA--A--NGIDNVQIIRMSA 263 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHH--H--hCCCcEEEEECCH
Confidence 3579999999999999888765 5899999999999 888887 3 3455666655443
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.4e-05 Score=71.94 Aligned_cols=83 Identities=13% Similarity=-0.010 Sum_probs=57.1
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh-HHhhccccccccCcceEEEEEeccee-------eecccCCC
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV-LALNIRPYDTVLDIHALKLVKVGGSV-------VYSTCSLS 237 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl-l~~~l~r~~~~~g~~~v~~~~~Da~~-------lDaPCSgs 237 (355)
++.+|||+|||+|..+.+++... .+.|+++|.|+.++ ..+.-. ..+++|+.. .|+-.++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~-----------~~~~~d~~~lp~~d~sfD~v~~~~ 118 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD-----------DKVVGSFEALPFRDKSFDVVMSSF 118 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc-----------ceEEechhhCCCCCCCEEEEEecC
Confidence 47899999999999999998875 47999999999999 322111 122334332 55555444
Q ss_pred CCccCCccccchHHHHhhhhHHHHHHHHHhhccCCc
Q psy7769 238 PIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGG 273 (355)
Q Consensus 238 G~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG 273 (355)
+ +....+.++.|+++.+.|||++
T Consensus 119 ~-------------l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 119 A-------------LHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred h-------------hhccCCHHHHHHHHHHHhcCce
Confidence 4 2233344478999999999953
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.6e-05 Score=73.49 Aligned_cols=139 Identities=15% Similarity=0.048 Sum_probs=80.3
Q ss_pred EechhcHHHHHhh-CCCCCC-eEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEe
Q psy7769 150 CMDGASLLPVLAL-NIRPYD-TVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKV 225 (355)
Q Consensus 150 ~QD~aS~l~~~~L-~~~pG~-~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~ 225 (355)
+-...-.++-.++ .....+ +|||+|||+|-.++.++.......|+|+|+|+..+ +++|+.+ .+..++.++..
T Consensus 92 Pr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~----~~l~~~~~~~~ 167 (280)
T COG2890 92 PRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAER----NGLVRVLVVQS 167 (280)
T ss_pred cCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHH----cCCccEEEEee
Confidence 3344444554433 222223 79999999999999999888778999999999999 8899983 23344444433
Q ss_pred c----------ceeeecccCCCC-CccCCc-cccchHH-HH-hhhh--HH-HHHHHHHhhccCCcEEEEEeCCCCCCCCH
Q psy7769 226 G----------GSVVYSTCSLSP-IQNDGV-VHMSLKR-IW-EETG--CE-IEIKHALKLVKVGGSVVYSTCSLSPIQND 288 (355)
Q Consensus 226 D----------a~~lDaPCSgsG-~t~~~~-l~~~~~~-l~-~l~~--lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE 288 (355)
| .....||---.- ...... +++.|.. +. .... +- +++..+.++|+|||.++. -++.+ +.+
T Consensus 168 dlf~~~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l-e~g~~--q~~ 244 (280)
T COG2890 168 DLFEPLRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL-EIGLT--QGE 244 (280)
T ss_pred ecccccCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE-EECCC--cHH
Confidence 3 223555551110 000000 1122211 10 0011 22 899999999999776665 45543 334
Q ss_pred HHHHHHH
Q psy7769 289 GVVHMSL 295 (355)
Q Consensus 289 ~vV~~~L 295 (355)
.|.+.+.
T Consensus 245 ~v~~~~~ 251 (280)
T COG2890 245 AVKALFE 251 (280)
T ss_pred HHHHHHH
Confidence 4444443
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.91 E-value=6.4e-05 Score=69.08 Aligned_cols=101 Identities=11% Similarity=-0.039 Sum_probs=65.8
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccCCCCCc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLSPIQ 240 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG~t 240 (355)
+.++.+|||+|||+|..+..++... .+|+++|+++.++ +++++. . .+. .++.+...|...++ . +
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~--~~v~gvD~s~~~i~~a~~~~~--~--~~~~~~i~~~~~d~~~~~--~-----~ 119 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRG--AIVKAVDISEQMVQMARNRAQ--G--RDVAGNVEFEVNDLLSLC--G-----E 119 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHH--h--cCCCCceEEEECChhhCC--C-----C
Confidence 5678999999999999999998753 6899999999999 667665 2 222 36788887765433 1 1
Q ss_pred cCCccccchHHHHhh--hhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 241 NDGVVHMSLKRIWEE--TGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 241 ~~~~l~~~~~~l~~l--~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
.+. .+...-+... ..++.++.++.+.+++|+.+.++.
T Consensus 120 fD~--ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~ 158 (219)
T TIGR02021 120 FDI--VVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAP 158 (219)
T ss_pred cCE--EEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 111 1111111111 122377888888888776665543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00013 Score=66.96 Aligned_cols=114 Identities=18% Similarity=0.090 Sum_probs=78.0
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee----------ee
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV----------VY 231 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~----------lD 231 (355)
+++|++||=++|++|....|++...+.|.|+|++.++... |-...++ -+|+..+..||.. ||
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~------R~Ni~PIL~DA~~P~~Y~~~Ve~VD 147 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK------RPNIIPILEDARKPEKYRHLVEKVD 147 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh------CCCceeeecccCCcHHhhhhccccc
Confidence 6799999999999999999999998889999999999777 4444441 2466777778764 44
Q ss_pred cccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE--eCCCCC-CCCHHHHHHHHHhh
Q psy7769 232 STCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS--TCSLSP-IQNDGVVHMSLKRI 298 (355)
Q Consensus 232 aPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs--TCSl~~-~ENE~vV~~~L~~~ 298 (355)
+-..- +.+-.+.+-+..+|-.+||+||.++.+ +-|+.- .+.+.|.+.-+++.
T Consensus 148 viy~D---------------VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL 202 (231)
T COG1889 148 VIYQD---------------VAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKL 202 (231)
T ss_pred EEEEe---------------cCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHH
Confidence 44311 111111114578899999999955544 555554 45555555455544
|
|
| >KOG2187|consensus | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.5e-05 Score=79.93 Aligned_cols=124 Identities=19% Similarity=0.188 Sum_probs=84.6
Q ss_pred EEechhcHHHH------HhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceE
Q psy7769 149 YCMDGASLLPV------LALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHAL 220 (355)
Q Consensus 149 ~~QD~aS~l~~------~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v 220 (355)
++|.=.+++.+ ..+++.++..+||+|||+|..++.+|+.. ++|++++++++.+ ++.|.+ . .|+.|.
T Consensus 360 FFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~--~--NgisNa 433 (534)
T KOG2187|consen 360 FFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQ--I--NGISNA 433 (534)
T ss_pred hhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcch--h--cCccce
Confidence 45776666554 34567788999999999999999998876 7999999999999 999998 4 688999
Q ss_pred EEEEeccee----eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCC
Q psy7769 221 KLVKVGGSV----VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPI 285 (355)
Q Consensus 221 ~~~~~Da~~----lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ 285 (355)
+|+.+-+.. ++-||-+++ +. ....+|.| ..+...+-.+++..+.=-++||.+|..+.+
T Consensus 434 ~Fi~gqaE~~~~sl~~~~~~~~-~~--v~iiDPpR----~Glh~~~ik~l~~~~~~~rlvyvSCn~~t~ 495 (534)
T KOG2187|consen 434 TFIVGQAEDLFPSLLTPCCDSE-TL--VAIIDPPR----KGLHMKVIKALRAYKNPRRLVYVSCNPHTA 495 (534)
T ss_pred eeeecchhhccchhcccCCCCC-ce--EEEECCCc----ccccHHHHHHHHhccCccceEEEEcCHHHh
Confidence 999885543 444442322 10 00112211 233333445555555336999999998543
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.90 E-value=8.7e-05 Score=68.97 Aligned_cols=127 Identities=11% Similarity=-0.063 Sum_probs=74.6
Q ss_pred echhcHHHHHh--hCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HH-hh-cccccc------ccCcc
Q psy7769 151 MDGASLLPVLA--LNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LA-LN-IRPYDT------VLDIH 218 (355)
Q Consensus 151 QD~aS~l~~~~--L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~-~~-l~r~~~------~~g~~ 218 (355)
..+...+.... +.+.++.+|||.+||.|.-+..||+.+ -.|+|+|+|+..+ +. ++ +..... .....
T Consensus 20 ~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G--~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~ 97 (218)
T PRK13255 20 EEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQG--HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAG 97 (218)
T ss_pred CCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCC--CeEEEEccCHHHHHHHHHHcCCCccccccccccccccC
Confidence 34445555443 345678899999999999999999865 5799999999988 32 11 110000 00124
Q ss_pred eEEEEEecceeeecccCCCCCccCCccccchHHHHhhhh-HH-HHHHHHHhhccCCcEEEEEeCCCCC
Q psy7769 219 ALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETG-CE-IEIKHALKLVKVGGSVVYSTCSLSP 284 (355)
Q Consensus 219 ~v~~~~~Da~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~-lQ-~lL~~A~~~LkpGG~lVYsTCSl~~ 284 (355)
+|.+.++|...+++. ..| . -++.|...-+..+.. .. +.+....++|+|||++++.|=...+
T Consensus 98 ~v~~~~~D~~~l~~~--~~~-~--fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~ 160 (218)
T PRK13255 98 EITIYCGDFFALTAA--DLA-D--VDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQ 160 (218)
T ss_pred ceEEEECcccCCCcc--cCC-C--eeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCC
Confidence 577788887554321 111 0 011122221122211 11 7799999999999986655544443
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.90 E-value=9.4e-05 Score=66.59 Aligned_cols=106 Identities=14% Similarity=0.045 Sum_probs=67.7
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCc---------EEEEcCCchhh--HHhhccccccccCc-ceEEEEEec
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDY---------YCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVG 226 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~---------V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~D 226 (355)
+.+.++++|+.|||-+||+|+..+..|.+..... ++++|+++..+ ++.|++. .+. ..+.+.+.|
T Consensus 21 l~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~----ag~~~~i~~~~~D 96 (179)
T PF01170_consen 21 LNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKA----AGVEDYIDFIQWD 96 (179)
T ss_dssp HHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHH----TT-CGGEEEEE--
T ss_pred HHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHh----cccCCceEEEecc
Confidence 4455688999999999999999988887665444 99999999999 8899983 233 347788878
Q ss_pred cee------------eecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCC
Q psy7769 227 GSV------------VYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 227 a~~------------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCS 281 (355)
+.. .|+|- | .+ ...-.....+. ++++.+.+.+++ ..|+.|++
T Consensus 97 ~~~l~~~~~~~d~IvtnPPy---G------~r--~~~~~~~~~ly~~~~~~~~~~l~~--~~v~l~~~ 151 (179)
T PF01170_consen 97 ARELPLPDGSVDAIVTNPPY---G------RR--LGSKKDLEKLYRQFLRELKRVLKP--RAVFLTTS 151 (179)
T ss_dssp GGGGGGTTSBSCEEEEE--S---T------TS--HCHHHHHHHHHHHHHHHHHCHSTT--CEEEEEES
T ss_pred hhhcccccCCCCEEEECcch---h------hh--ccCHHHHHHHHHHHHHHHHHHCCC--CEEEEEEC
Confidence 765 33332 1 11 11122334455 899999999998 55555543
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=7.6e-05 Score=71.72 Aligned_cols=128 Identities=10% Similarity=0.007 Sum_probs=76.2
Q ss_pred hCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEE-----------ecce
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVK-----------VGGS 228 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~-----------~Da~ 228 (355)
+.+.++.+|||+|||+|..+..++......+|+++|+++.++ +++++.+ +.+++ .|..
T Consensus 60 ~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~---------v~~v~~D~~e~~~~~kFDlI 130 (279)
T PHA03411 60 IDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPE---------AEWITSDVFEFESNEKFDVV 130 (279)
T ss_pred hccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcC---------CEEEECchhhhcccCCCcEE
Confidence 456667899999999999999888765447999999999998 5555431 23333 3444
Q ss_pred eeecccCCCCCccCCc-cccch-HHHHhhhhHHHHHHHHHhhccCCcEEE--EEeCCC-CCCCCHHHHHHHHHhh
Q psy7769 229 VVYSTCSLSPIQNDGV-VHMSL-KRIWEETGCEIEIKHALKLVKVGGSVV--YSTCSL-SPIQNDGVVHMSLKRI 298 (355)
Q Consensus 229 ~lDaPCSgsG~t~~~~-l~~~~-~~l~~l~~lQ~lL~~A~~~LkpGG~lV--YsTCSl-~~~ENE~vV~~~L~~~ 298 (355)
..++|.-.......+. ..|+- +.-.+...+.+.+..+..+|+|+|.+. |+.--+ +..=...-...+|+.+
T Consensus 131 IsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~ 205 (279)
T PHA03411 131 ISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQT 205 (279)
T ss_pred EEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhc
Confidence 4666663222100000 11110 000010112377888899999999764 444222 4444556677778754
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.84 E-value=4.7e-05 Score=69.16 Aligned_cols=57 Identities=18% Similarity=0.068 Sum_probs=46.3
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecc
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGG 227 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da 227 (355)
.|.+|||+|||+|..++.++..+. .+|+++|.++..+ +++|++ . .+. .++++++.|+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~--~--~~~~~~~~~~~~D~ 108 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLA--L--LKSGEQAEVVRNSA 108 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHH--H--hCCcccEEEEehhH
Confidence 588999999999999999988753 5899999999999 888887 3 333 3567777665
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=97.83 E-value=5.8e-05 Score=72.04 Aligned_cols=109 Identities=10% Similarity=0.027 Sum_probs=63.3
Q ss_pred CCCCeEeeecccCcch----HHHHHHhcC-----CCcEEEEcCCchhh--HHhhccc------c------ccc---cC--
Q psy7769 165 RPYDTVLDMCAAPGGK----TLVALQTLY-----PDYYCMDGASLLPV--LALNIRP------Y------DTV---LD-- 216 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgK----T~~la~~~~-----~g~V~AvD~s~~Rl--l~~~l~r------~------~~~---~g-- 216 (355)
.++.+|||+|||+|.- +..+++... ..+|+|+|+|+.++ +++.+-. + +|. .+
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 4567999999999974 344444432 36899999999999 5554310 0 000 00
Q ss_pred -----c-ceEEEEEecceeeecccCCCCCccCCc-cc-cchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeC
Q psy7769 217 -----I-HALKLVKVGGSVVYSTCSLSPIQNDGV-VH-MSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 217 -----~-~~v~~~~~Da~~lDaPCSgsG~t~~~~-l~-~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTC 280 (355)
+ .+|.+...|....++|-..+.+...+. +. +.+. .+ +++++..+.|+|||.|+....
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~-------~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEP-------TQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHH-------HHHHHHHHHHHHhCCCeEEEEECc
Confidence 0 246677777654332221111111111 11 2211 22 789999999999999998643
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=97.82 E-value=4.2e-05 Score=67.72 Aligned_cols=66 Identities=21% Similarity=0.122 Sum_probs=53.7
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeee
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVY 231 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lD 231 (355)
.+..+++.+|++|||+|||+|..|..++... ++|+|+|+++.++ +++++. . ..++++++.|+..++
T Consensus 5 i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~--~~v~~vE~~~~~~~~~~~~~~--~----~~~v~ii~~D~~~~~ 72 (169)
T smart00650 5 IVRAANLRPGDTVLEIGPGKGALTEELLERA--ARVTAIEIDPRLAPRLREKFA--A----ADNLTVIHGDALKFD 72 (169)
T ss_pred HHHhcCCCCcCEEEEECCCccHHHHHHHhcC--CeEEEEECCHHHHHHHHHHhc--c----CCCEEEEECchhcCC
Confidence 3455678889999999999999999999873 7999999999998 777766 2 346888899986543
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=97.81 E-value=6.9e-05 Score=64.25 Aligned_cols=100 Identities=17% Similarity=0.015 Sum_probs=64.9
Q ss_pred cHHHHHhhC-CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh-HHhhccccccccCcceEEEEEecce----
Q psy7769 155 SLLPVLALN-IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV-LALNIRPYDTVLDIHALKLVKVGGS---- 228 (355)
Q Consensus 155 S~l~~~~L~-~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl-l~~~l~r~~~~~g~~~v~~~~~Da~---- 228 (355)
+.++..++. ..++.+|||++||.|..+..++... .+|+++|+++..+ . .+.. ....+..
T Consensus 10 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~-~~~~------------~~~~~~~~~~~ 74 (161)
T PF13489_consen 10 ADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK-RNVV------------FDNFDAQDPPF 74 (161)
T ss_dssp HHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH-TTSE------------EEEEECHTHHC
T ss_pred HHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh-hhhh------------hhhhhhhhhhc
Confidence 334444554 5788999999999999888887664 4999999999887 5 1111 1111111
Q ss_pred ---eeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 229 ---VVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 229 ---~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
.+|.--+. .-+..+.....+|+...++|||||.++.++-..
T Consensus 75 ~~~~fD~i~~~-------------~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 75 PDGSFDLIICN-------------DVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HSSSEEEEEEE-------------SSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred cccchhhHhhH-------------HHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 12222111 112223334488999999999999999998655
|
... |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=97.81 E-value=7.9e-05 Score=57.32 Aligned_cols=100 Identities=16% Similarity=0.062 Sum_probs=59.7
Q ss_pred eEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccCCccc
Q psy7769 169 TVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDGVVH 246 (355)
Q Consensus 169 ~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~~~l~ 246 (355)
+|+|+|||+|..+..++. ....+++++|.++..+ +++... . ....++.+...|........ ....++.
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~-----~~~~d~i 70 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAA--A--LLADNVEVLKGDAEELPPEA-----DESFDVI 70 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHh--c--ccccceEEEEcChhhhcccc-----CCceEEE
Confidence 589999999999888887 3457999999999988 442332 1 12345566665554321100 0000100
Q ss_pred cchHHHHhhhhHH-HHHHHHHhhccCCcEEEEE
Q psy7769 247 MSLKRIWEETGCE-IEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 247 ~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYs 278 (355)
+...-........ .+++.+.+.++|||.++++
T Consensus 71 ~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 71 ISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred EEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 0000000001222 8899999999999999986
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0001 Score=67.91 Aligned_cols=108 Identities=11% Similarity=0.058 Sum_probs=70.3
Q ss_pred CCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEeccee-eecccCCCCCc
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSV-VYSTCSLSPIQ 240 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~-lDaPCSgsG~t 240 (355)
.-.+||++|++.|.-|+.+|..++ .|+|+++|.++.+. +++++++ .|. .+|+++.+|+.. ++.-..... .
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~----ag~~~~I~~~~gda~~~l~~l~~~~~-~ 119 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRK----AGLDDRIEVIEGDALEVLPELANDGE-E 119 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHH----TTGGGGEEEEES-HHHHHHHHHHTTT-T
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHh----cCCCCcEEEEEeccHhhHHHHHhccC-C
Confidence 345999999999999999998775 49999999999999 8888884 344 578999888754 111110000 0
Q ss_pred cCCcccc-chHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 241 NDGVVHM-SLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 241 ~~~~l~~-~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
+.-++.| +.++ .+....++.+.++|+|||.||.-..-+
T Consensus 120 ~~fD~VFiDa~K----~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205)
T PF01596_consen 120 GQFDFVFIDADK----RNYLEYFEKALPLLRPGGVIIADNVLW 158 (205)
T ss_dssp TSEEEEEEESTG----GGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred CceeEEEEcccc----cchhhHHHHHhhhccCCeEEEEccccc
Confidence 0001111 1000 011166888889999999999866544
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.79 E-value=3.7e-05 Score=73.58 Aligned_cols=68 Identities=19% Similarity=0.044 Sum_probs=55.1
Q ss_pred HHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeec
Q psy7769 156 LLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYS 232 (355)
Q Consensus 156 ~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDa 232 (355)
...+..+++.+|++|||+|||+|..|..+++.. .+|+|+|+++.++ +++++. + .++.++++|+..++.
T Consensus 32 ~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~------~-~~v~~i~~D~~~~~~ 101 (272)
T PRK00274 32 DKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFA------E-DNLTIIEGDALKVDL 101 (272)
T ss_pred HHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhc------c-CceEEEEChhhcCCH
Confidence 344556688899999999999999999999885 4999999999999 666554 1 468899999876544
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=97.79 E-value=5.4e-05 Score=69.19 Aligned_cols=117 Identities=12% Similarity=0.114 Sum_probs=75.5
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEe
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKV 225 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~ 225 (355)
+|=|.+-.++...+|.-..-.++||++||.|..|.+||... .+|+|+|+++..+ +++++. +.++|.+...
T Consensus 25 ~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~------~~~~V~~~~~ 96 (201)
T PF05401_consen 25 WYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLA------GLPHVEWIQA 96 (201)
T ss_dssp HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTT------T-SSEEEEES
T ss_pred HHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcC------CCCCeEEEEC
Confidence 45455555555556666666799999999999999999987 6899999999999 777777 3457888888
Q ss_pred cceeeecccCCCCCccCCc-cccchHHHHhh---hhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 226 GGSVVYSTCSLSPIQNDGV-VHMSLKRIWEE---TGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 226 Da~~lDaPCSgsG~t~~~~-l~~~~~~l~~l---~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
|.....++ ...+ +..+ +-+.-+ ..++.++......|+|||.||..+-
T Consensus 97 dvp~~~P~-------~~FDLIV~S-EVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 97 DVPEFWPE-------GRFDLIVLS-EVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp -TTT---S-------S-EEEEEEE-S-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCCCCC-------CCeeEEEEe-hHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 75331111 1111 1111 111111 1233788999999999999999664
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00022 Score=68.79 Aligned_cols=127 Identities=14% Similarity=0.011 Sum_probs=77.3
Q ss_pred HhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccc-cccCcceEEEEEeccee-------
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYD-TVLDIHALKLVKVGGSV------- 229 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~-~~~g~~~v~~~~~Da~~------- 229 (355)
.+..+. ..+|||+|+|.|+.+..++...+..+|+++|+++..+ +++.+..+. .....+++.++..|+..
T Consensus 71 ~~~~~~-p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~ 149 (283)
T PRK00811 71 LFAHPN-PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETEN 149 (283)
T ss_pred HhhCCC-CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCC
Confidence 333343 4699999999999998888754346899999999999 666664211 00123578888888754
Q ss_pred -eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 230 -VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 230 -lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
.|+-.+.+. +. +.+. ..+ -.++.++.+.+.|+|||.+|..+-+ +......+..+++..
T Consensus 150 ~yDvIi~D~~---dp---~~~~--~~l-~t~ef~~~~~~~L~~gGvlv~~~~~--~~~~~~~~~~i~~tl 208 (283)
T PRK00811 150 SFDVIIVDST---DP---VGPA--EGL-FTKEFYENCKRALKEDGIFVAQSGS--PFYQADEIKDMHRKL 208 (283)
T ss_pred cccEEEECCC---CC---CCch--hhh-hHHHHHHHHHHhcCCCcEEEEeCCC--cccCHHHHHHHHHHH
Confidence 121111000 00 1111 000 0127888999999999999875433 334455666665544
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00022 Score=68.11 Aligned_cols=117 Identities=14% Similarity=-0.044 Sum_probs=75.0
Q ss_pred hCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee----------
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV---------- 229 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~---------- 229 (355)
..+.|. +||++++|.|+.+..++......+|+++|+++..+ +++++.........++++++..|+..
T Consensus 69 ~~~~p~-~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yD 147 (270)
T TIGR00417 69 THPNPK-HVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFD 147 (270)
T ss_pred cCCCCC-EEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCcc
Confidence 344444 99999999999887777654346899999999988 66665421100122456777777632
Q ss_pred ---eecccCCCCCccCCccccchHHHHhhhhH-H-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 230 ---VYSTCSLSPIQNDGVVHMSLKRIWEETGC-E-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 230 ---lDaPCSgsG~t~~~~l~~~~~~l~~l~~l-Q-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
+|++-. .+ +. ..+ . +.++.+.+.|+|||.++..++|. .-+...+..+++.
T Consensus 148 vIi~D~~~~-~~----------~~-----~~l~~~ef~~~~~~~L~pgG~lv~~~~~~--~~~~~~~~~~~~t 202 (270)
T TIGR00417 148 VIIVDSTDP-VG----------PA-----ETLFTKEFYELLKKALNEDGIFVAQSESP--WIQLELITDLKRD 202 (270)
T ss_pred EEEEeCCCC-CC----------cc-----cchhHHHHHHHHHHHhCCCcEEEEcCCCc--ccCHHHHHHHHHH
Confidence 443320 11 00 011 1 77889999999999999987654 3445666655543
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.73 E-value=3.5e-05 Score=68.60 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=62.9
Q ss_pred CeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecc---------------ee
Q psy7769 168 DTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGG---------------SV 229 (355)
Q Consensus 168 ~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da---------------~~ 229 (355)
..|+|+|||-||-|+++|... .+|+|+|+++.|+ ++.|++ - .|. .+|.++++|. ..
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~--v--YGv~~~I~~i~gD~~~~~~~~~~~~~~D~vF 74 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAE--V--YGVADNIDFICGDFFELLKRLKSNKIFDVVF 74 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHH--H--TT-GGGEEEEES-HHHHGGGB------SEEE
T ss_pred CEEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHH--H--cCCCCcEEEEeCCHHHHHhhccccccccEEE
Confidence 369999999999999999986 6899999999999 899998 4 353 5788776654 34
Q ss_pred eecccCCCCCccCCccccchHHH-Hhhh--hHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHH
Q psy7769 230 VYSTCSLSPIQNDGVVHMSLKRI-WEET--GCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSL 295 (355)
Q Consensus 230 lDaPCSgsG~t~~~~l~~~~~~l-~~l~--~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L 295 (355)
++||--|-.-..... + ++ ..+. .++++++.+.+.-+. .++|= -+.-|-..+.+++
T Consensus 75 lSPPWGGp~Y~~~~~--f---dL~~~~~p~~~~~l~~~~~~~t~n--v~l~L----PRn~dl~ql~~~~ 132 (163)
T PF09445_consen 75 LSPPWGGPSYSKKDV--F---DLEKSMQPFNLEDLLKAARKITPN--VVLFL----PRNSDLNQLSQLT 132 (163)
T ss_dssp E---BSSGGGGGSSS--B----TTTSSSS--HHHHHHHHHHH-S---EEEEE----ETTB-HHHHHHT-
T ss_pred ECCCCCCccccccCc--c---CHHHccCCCCHHHHHHHHHhhCCC--EEEEe----CCCCCHHHHHHHh
Confidence 788874322111111 1 11 1112 233778777776542 55553 2333445555554
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0001 Score=68.48 Aligned_cols=103 Identities=13% Similarity=-0.059 Sum_probs=62.0
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcC----CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee---
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLY----PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV--- 229 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~----~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~--- 229 (355)
...+...++.+|||+|||+|..+..++.... ..+|+|+|+++.++ ++++.. . . ++.+...|+..
T Consensus 53 ~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~--~--~---~~~~~~~~~~~l~~ 125 (232)
T PRK06202 53 RPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR--R--P---GVTFRQAVSDELVA 125 (232)
T ss_pred HHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc--c--C---CCeEEEEecccccc
Confidence 3444556778999999999999988886431 25899999999999 555443 1 1 23333333221
Q ss_pred ----eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 230 ----VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 230 ----lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
+|.-++..+ +++-++. .+.++|+++.+.++ |.++...-+
T Consensus 126 ~~~~fD~V~~~~~------lhh~~d~-----~~~~~l~~~~r~~~--~~~~i~dl~ 168 (232)
T PRK06202 126 EGERFDVVTSNHF------LHHLDDA-----EVVRLLADSAALAR--RLVLHNDLI 168 (232)
T ss_pred cCCCccEEEECCe------eecCChH-----HHHHHHHHHHHhcC--eeEEEeccc
Confidence 444443322 2222211 12268899999988 455554333
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.72 E-value=9.1e-05 Score=67.26 Aligned_cols=91 Identities=18% Similarity=0.139 Sum_probs=63.2
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecc--------------
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGG-------------- 227 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da-------------- 227 (355)
-.|.+|||++||+|+.++.++..+. .+++.+|.+...+ +++|++. ++. .++.++..|+
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~----l~~~~~~~~~~~da~~~L~~~~~~~~FD 116 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKA----LGLEGEARVLRNDALRALKQLGTREPFD 116 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHH----hCCccceEEEeecHHHHHHhcCCCCccc
Confidence 3689999999999999998887753 6899999999988 9999983 332 3455555444
Q ss_pred -eeeecccCCCCCccCCccccchHHHHhhhhHH--HHHHHHHhhccCCcEEEE
Q psy7769 228 -SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCE--IEIKHALKLVKVGGSVVY 277 (355)
Q Consensus 228 -~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ--~lL~~A~~~LkpGG~lVY 277 (355)
..+|||.- - .+...+ -++..-..+|+|||.+|.
T Consensus 117 lVflDPPy~-~----------------~l~~~~~~~~~~~~~~~L~~~~~iv~ 152 (187)
T COG0742 117 LVFLDPPYA-K----------------GLLDKELALLLLEENGWLKPGALIVV 152 (187)
T ss_pred EEEeCCCCc-c----------------chhhHHHHHHHHHhcCCcCCCcEEEE
Confidence 44888871 1 122112 222235567999877776
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=7.3e-05 Score=70.97 Aligned_cols=75 Identities=12% Similarity=-0.053 Sum_probs=58.6
Q ss_pred EEech-hcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEe
Q psy7769 149 YCMDG-ASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKV 225 (355)
Q Consensus 149 ~~QD~-aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~ 225 (355)
++-|+ .....+..+++.+|+.|||+|||+|..|..+++.. .+|+|+|+++.++ +++++. . ..++.++++
T Consensus 11 fl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~--~----~~~v~ii~~ 82 (258)
T PRK14896 11 FLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEI--A----AGNVEIIEG 82 (258)
T ss_pred ccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhc--c----CCCEEEEEe
Confidence 33343 34455666788899999999999999999999874 6899999999999 766665 2 357889999
Q ss_pred cceeee
Q psy7769 226 GGSVVY 231 (355)
Q Consensus 226 Da~~lD 231 (355)
|+..++
T Consensus 83 D~~~~~ 88 (258)
T PRK14896 83 DALKVD 88 (258)
T ss_pred ccccCC
Confidence 986644
|
|
| >KOG2904|consensus | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0002 Score=68.41 Aligned_cols=122 Identities=12% Similarity=0.055 Sum_probs=80.2
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEec----c------------
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVG----G------------ 227 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~D----a------------ 227 (355)
.+..+||+|||+|..++.++..+.+++|+|+|+|+..+ +.+|++|+.. . +.+.+.+.+ .
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l-~--g~i~v~~~~me~d~~~~~~l~~~~~d 224 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL-S--GRIEVIHNIMESDASDEHPLLEGKID 224 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh-c--CceEEEecccccccccccccccCcee
Confidence 46689999999999999999888889999999999999 8899996431 1 234444332 1
Q ss_pred -eeeecccCCCCCccCCc---cc-----cchHHHHhhhh------HHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHH
Q psy7769 228 -SVVYSTCSLSPIQNDGV---VH-----MSLKRIWEETG------CEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVH 292 (355)
Q Consensus 228 -~~lDaPCSgsG~t~~~~---l~-----~~~~~l~~l~~------lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~ 292 (355)
....||- ....+ ++ +.+. +.-... +-.++.-|-++|+|||.+++.+--. .+....|.
T Consensus 225 llvsNPPY-----I~~dD~~~l~~eV~~yEp~-lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~--~~~~~lv~ 296 (328)
T KOG2904|consen 225 LLVSNPPY-----IRKDDNRQLKPEVRLYEPK-LALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER--KEHSYLVR 296 (328)
T ss_pred EEecCCCc-----ccccchhhcCchheecCch-hhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc--ccCcHHHH
Confidence 1134444 11111 11 1111 110011 1166777899999999999987644 56677788
Q ss_pred HHHHhh
Q psy7769 293 MSLKRI 298 (355)
Q Consensus 293 ~~L~~~ 298 (355)
..+...
T Consensus 297 ~~m~s~ 302 (328)
T KOG2904|consen 297 IWMISL 302 (328)
T ss_pred HHHHhc
Confidence 777654
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00035 Score=69.64 Aligned_cols=121 Identities=12% Similarity=-0.029 Sum_probs=74.6
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh-HHhhcccc----ccccCcceEEEEEeccee---
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV-LALNIRPY----DTVLDIHALKLVKVGGSV--- 229 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl-l~~~l~r~----~~~~g~~~v~~~~~Da~~--- 229 (355)
++....+.|. +||++|+|.|+.+..+++.....+|+++|+++..+ +.++...+ +.....++++++..||..
T Consensus 143 p~m~~h~~Pk-rVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~ 221 (374)
T PRK01581 143 PIMSKVIDPK-RVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLS 221 (374)
T ss_pred HHHHhCCCCC-EEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHH
Confidence 4445555554 99999999999666666543347899999999999 54432100 000233678888888764
Q ss_pred ----------eecccCCCCCccCCccccchHHHHhhhhHH--HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHH
Q psy7769 230 ----------VYSTCSLSPIQNDGVVHMSLKRIWEETGCE--IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLK 296 (355)
Q Consensus 230 ----------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ--~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~ 296 (355)
+|+|- +.. .....+. +.++.+.+.|+|||++|.-.- +|.....++..+.+
T Consensus 222 ~~~~~YDVIIvDl~D--------------P~~-~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~--sp~~~~~~~~~i~~ 283 (374)
T PRK01581 222 SPSSLYDVIIIDFPD--------------PAT-ELLSTLYTSELFARIATFLTEDGAFVCQSN--SPADAPLVYWSIGN 283 (374)
T ss_pred hcCCCccEEEEcCCC--------------ccc-cchhhhhHHHHHHHHHHhcCCCcEEEEecC--ChhhhHHHHHHHHH
Confidence 33321 100 0011222 789999999999999887643 33455555444443
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=7.5e-05 Score=72.50 Aligned_cols=79 Identities=18% Similarity=0.033 Sum_probs=61.5
Q ss_pred EEEechh-cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccC-cceEEEE
Q psy7769 148 YYCMDGA-SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLD-IHALKLV 223 (355)
Q Consensus 148 ~~~QD~a-S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g-~~~v~~~ 223 (355)
.++.|+. -...+..+++.+|+.|||+|||+|..|..++... .+|+|+|+++.++ +++++. . .+ ..+++++
T Consensus 17 nFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~--~--~~~~~~v~ii 90 (294)
T PTZ00338 17 HILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQ--N--SPLASKLEVI 90 (294)
T ss_pred cccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHH--h--cCCCCcEEEE
Confidence 3444543 4455667788999999999999999999998864 6899999999999 888876 3 23 3578999
Q ss_pred Eecceeeec
Q psy7769 224 KVGGSVVYS 232 (355)
Q Consensus 224 ~~Da~~lDa 232 (355)
.+|+..+|.
T Consensus 91 ~~Dal~~~~ 99 (294)
T PTZ00338 91 EGDALKTEF 99 (294)
T ss_pred ECCHhhhcc
Confidence 999866443
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00014 Score=68.49 Aligned_cols=128 Identities=12% Similarity=0.113 Sum_probs=74.8
Q ss_pred EechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhc---CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEE
Q psy7769 150 CMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTL---YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVK 224 (355)
Q Consensus 150 ~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~---~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~ 224 (355)
....++.++.. ...+.+|||+|||+|..++.++..+ ....|+|+|+++..+ +++|+.+ +.+.+
T Consensus 36 P~~iAr~~~i~---~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~---------~~~~~ 103 (241)
T PHA03412 36 PIGLARDFTID---ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPE---------ATWIN 103 (241)
T ss_pred CHHHHHHHHHh---ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccC---------CEEEE
Confidence 45554544322 2347799999999999999998753 236899999999999 6666541 23333
Q ss_pred ec-----------ceeeecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEE--------EEeCCCCC
Q psy7769 225 VG-----------GSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVV--------YSTCSLSP 284 (355)
Q Consensus 225 ~D-----------a~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lV--------YsTCSl~~ 284 (355)
.| .....||-.-.. . . .+. .+ ..-..+. .++..|.+++++|+.|+ ||-|-...
T Consensus 104 ~D~~~~~~~~~FDlIIsNPPY~~~~-~--~--d~~-ar-~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~~~~y~~~~~~~ 176 (241)
T PHA03412 104 ADALTTEFDTLFDMAISNPPFGKIK-T--S--DFK-GK-YTGAEFEYKVIERASQIARQGTFIIPQMSANFRYSGTHYFR 176 (241)
T ss_pred cchhcccccCCccEEEECCCCCCcc-c--c--ccC-Cc-ccccHHHHHHHHHHHHHcCCCEEEeCcccccCcccCcccee
Confidence 33 333555542111 0 0 000 00 0011223 79999999999887655 67666552
Q ss_pred -CCC--HHHHHHHHH
Q psy7769 285 -IQN--DGVVHMSLK 296 (355)
Q Consensus 285 -~EN--E~vV~~~L~ 296 (355)
+|| ..-+.+|++
T Consensus 177 ~~~~~~~~~~~~~~~ 191 (241)
T PHA03412 177 QDESTTSSKCKKFLD 191 (241)
T ss_pred eccCcccHHHHHHHH
Confidence 222 234445554
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0002 Score=69.85 Aligned_cols=52 Identities=17% Similarity=0.116 Sum_probs=39.8
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
++..|.++++..++|++-|-||.|.++++..++++|+|+|.++..+ +++++.
T Consensus 12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~ 65 (310)
T PF01795_consen 12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLK 65 (310)
T ss_dssp HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTC
T ss_pred HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHh
Confidence 4567789999999999999999999999988779999999999999 666766
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00021 Score=70.47 Aligned_cols=104 Identities=16% Similarity=0.125 Sum_probs=60.8
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccc--ccc-Cc---ceEEEEEeccee--------
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYD--TVL-DI---HALKLVKVGGSV-------- 229 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~--~~~-g~---~~v~~~~~Da~~-------- 229 (355)
++.+|||||||=||-..-.... +.+.++++|++..-+ ++++.+.+. .-. .. -...++..|...
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 7899999999999977655543 348999999999999 666662100 000 00 123556666532
Q ss_pred -----eecccCCCCCccCCccc--cc-hHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 230 -----VYSTCSLSPIQNDGVVH--MS-LKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 230 -----lDaPCSgsG~t~~~~l~--~~-~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
.|+.+.=++ +| |. .+..+ .+|.++.+.|+|||.++-+|..-
T Consensus 141 ~~~~~FDvVScQFa------lHY~Fese~~ar------~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 141 PRSRKFDVVSCQFA------LHYAFESEEKAR------QFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp STTS-EEEEEEES-------GGGGGSSHHHHH------HHHHHHHHTEEEEEEEEEEEE-H
T ss_pred ccCCCcceeehHHH------HHHhcCCHHHHH------HHHHHHHHhcCCCCEEEEEecCH
Confidence 111110000 22 21 11111 79999999999999999988765
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.60 E-value=9.3e-05 Score=71.62 Aligned_cols=143 Identities=20% Similarity=0.140 Sum_probs=81.3
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhc-------CCCcEEEEcCCchhh--HHhhccccccccCc-
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTL-------YPDYYCMDGASLLPV--LALNIRPYDTVLDI- 217 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~-------~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~- 217 (355)
||--+.-+.+.+.++.+.++++|+|-|||+|+....+...+ ....++++|+++..+ ++-|+. - .+.
T Consensus 28 ~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~--l--~~~~ 103 (311)
T PF02384_consen 28 FYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLL--L--HGID 103 (311)
T ss_dssp C---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHH--H--TTHH
T ss_pred eehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhh--h--hccc
Confidence 55555556788888899999999999999999988877642 457899999999988 333432 1 122
Q ss_pred -ceEEEEEe--------------cceeeecccCCCCCccCCc----cccchHHHHhhhhHH-HHHHHHHhhccCCcEEEE
Q psy7769 218 -HALKLVKV--------------GGSVVYSTCSLSPIQNDGV----VHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVY 277 (355)
Q Consensus 218 -~~v~~~~~--------------Da~~lDaPCSgsG~t~~~~----l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVY 277 (355)
.+..+... |.....||-...+. .... .+|... .......+ ..+.++++.|++||++++
T Consensus 104 ~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~Fi~~~l~~Lk~~G~~~~ 181 (311)
T PF02384_consen 104 NSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEW-KDEELEKDERFKKY-FPPKSNAEYAFIEHALSLLKPGGRAAI 181 (311)
T ss_dssp CBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES--STGGGCTTCCCTTC-SSSTTEHHHHHHHHHHHTEEEEEEEEE
T ss_pred cccccccccccccccccccccccccccCCCCcccccc-cccccccccccccc-CCCccchhhhhHHHHHhhcccccceeE
Confidence 22233333 33447777744321 1111 123221 11112233 578999999999999877
Q ss_pred EeCC--CCCCCCHHHHHHHHH
Q psy7769 278 STCS--LSPIQNDGVVHMSLK 296 (355)
Q Consensus 278 sTCS--l~~~ENE~vV~~~L~ 296 (355)
.+-+ ++...-+.-+++.|-
T Consensus 182 Ilp~~~L~~~~~~~~iR~~ll 202 (311)
T PF02384_consen 182 ILPNGFLFSSSSEKKIRKYLL 202 (311)
T ss_dssp EEEHHHHHGSTHHHHHHHHHH
T ss_pred EecchhhhccchHHHHHHHHH
Confidence 7654 333222455655543
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00046 Score=63.40 Aligned_cols=47 Identities=11% Similarity=-0.024 Sum_probs=39.1
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
.+.++.+|||+|||+|..+..++...+...|+|+|+|+.++ +++++.
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~ 88 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP 88 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC
Confidence 45578899999999999999998876558999999999999 555443
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00012 Score=76.14 Aligned_cols=119 Identities=11% Similarity=0.073 Sum_probs=83.5
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeee---cccCCCCC
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVY---STCSLSPI 239 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lD---aPCSgsG~ 239 (355)
..+..+||+|||-|..++++|...+...++++|++...+ +.+.+. . .+..|+.++..|+..+. ++.
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~--~--~~l~N~~~~~~~~~~~~~~~~~~----- 416 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAG--E--QNITNFLLFPNNLDLILNDLPNN----- 416 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHH--H--cCCCeEEEEcCCHHHHHHhcCcc-----
Confidence 356799999999999999999998888999999999988 444444 2 46778888888765321 111
Q ss_pred ccCCc-cc----cchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 240 QNDGV-VH----MSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 240 t~~~~-l~----~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
+.++. +. |-..+..++--+| ..|+...+.|||||.|-+.| -++.-..+.++..
T Consensus 417 sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T------D~~~y~~~~~~~~ 475 (506)
T PRK01544 417 SLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS------DIENYFYEAIELI 475 (506)
T ss_pred cccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc------CCHHHHHHHHHHH
Confidence 11222 22 4333333333344 88999999999999999988 5566666666543
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00013 Score=68.28 Aligned_cols=113 Identities=14% Similarity=0.044 Sum_probs=69.3
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh-HHhhcccc-ccccCcceEEEEEeccee--eeccc
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV-LALNIRPY-DTVLDIHALKLVKVGGSV--VYSTC 234 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl-l~~~l~r~-~~~~g~~~v~~~~~Da~~--lDaPC 234 (355)
+....|+.|++|||.|.|-|..++..++.+. .+|+.+|.++.=+ |+..-- . +.+.. .+++++.+|+.. -|.+-
T Consensus 127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNP-wSr~l~~-~~i~iilGD~~e~V~~~~D 203 (287)
T COG2521 127 VELVKVKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNP-WSRELFE-IAIKIILGDAYEVVKDFDD 203 (287)
T ss_pred hheeccccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCC-CCccccc-cccEEecccHHHHHhcCCc
Confidence 3445677899999999999999888887751 3899999999888 432110 0 00011 257888777643 11111
Q ss_pred CCCCCccCCccccchHHHHhhhhHH--HHHHHHHhhccCCcEEEEEe
Q psy7769 235 SLSPIQNDGVVHMSLKRIWEETGCE--IEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 235 SgsG~t~~~~l~~~~~~l~~l~~lQ--~lL~~A~~~LkpGG~lVYsT 279 (355)
+++-. +.-+|-++..-..|. ++-++.++.|||||+++--|
T Consensus 204 ~sfDa-----IiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 204 ESFDA-----IIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred cccce-----EeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 11100 111122222223444 78899999999999998444
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00032 Score=78.42 Aligned_cols=128 Identities=10% Similarity=0.042 Sum_probs=78.2
Q ss_pred CCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccc------------cCcceEEEEEeccee---
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTV------------LDIHALKLVKVGGSV--- 229 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~------------~g~~~v~~~~~Da~~--- 229 (355)
|.+|||+|||+|..++.++...+.++|+|+|+|+..+ +++|+++...- ....++.++++|...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 4689999999999999999887668999999999999 88888731100 001357888777532
Q ss_pred -----eecccCCCCCccCCc-------cc-cchH-------HHHhh-------hhHH---HHHHHHHhhccCCcEEEEEe
Q psy7769 230 -----VYSTCSLSPIQNDGV-------VH-MSLK-------RIWEE-------TGCE---IEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 230 -----lDaPCSgsG~t~~~~-------l~-~~~~-------~l~~l-------~~lQ---~lL~~A~~~LkpGG~lVYsT 279 (355)
+|.-.|.=--..... ++ +.|+ ....+ ..+. +|+..|.++|+|||.+++=.
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 222211000000000 00 1110 00111 1222 89999999999999888544
Q ss_pred CCCCCCCCHHHHHHHHHh
Q psy7769 280 CSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 280 CSl~~~ENE~vV~~~L~~ 297 (355)
-..+.+.|.+.++++
T Consensus 279 ---G~~q~~~v~~~l~~~ 293 (1082)
T PLN02672 279 ---GGRPGQAVCERLFER 293 (1082)
T ss_pred ---CccHHHHHHHHHHHH
Confidence 445667777555554
|
|
| >KOG1099|consensus | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00024 Score=66.24 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=26.7
Q ss_pred CeEeeecccCcchHHHHHHhc-C----C----CcEEEEcCCc
Q psy7769 168 DTVLDMCAAPGGKTLVALQTL-Y----P----DYYCMDGASL 200 (355)
Q Consensus 168 ~~VLD~CAgPGgKT~~la~~~-~----~----g~V~AvD~s~ 200 (355)
.+|+|+|||||+++..+++.+ . . .+|+|+|+.+
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~ 84 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP 84 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc
Confidence 489999999999999998754 2 1 2399999876
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00039 Score=63.79 Aligned_cols=57 Identities=9% Similarity=-0.080 Sum_probs=44.7
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEec
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVG 226 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~D 226 (355)
..++.+|||+|||+|..+..+++.. ..|+++|+++.++ +++++. . .+. .++.+...|
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~--~--~~~~~~i~~~~~d 120 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAP--E--AGLAGNITFEVGD 120 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHH--h--cCCccCcEEEEcC
Confidence 3578899999999999999988764 5699999999999 666665 2 222 457777777
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00023 Score=67.85 Aligned_cols=79 Identities=18% Similarity=0.058 Sum_probs=65.1
Q ss_pred EEEechh-cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEE
Q psy7769 148 YYCMDGA-SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVK 224 (355)
Q Consensus 148 ~~~QD~a-S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~ 224 (355)
-|+.|.. -.-++...++++++.||++|+|.|..|..|++.. .+|+|+|+++..+ |++.+. ...|+++++
T Consensus 11 nFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~------~~~n~~vi~ 82 (259)
T COG0030 11 NFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERFA------PYDNLTVIN 82 (259)
T ss_pred ccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhcc------cccceEEEe
Confidence 4566654 3456778889999999999999999999999987 6799999999988 766664 236789999
Q ss_pred ecceeeeccc
Q psy7769 225 VGGSVVYSTC 234 (355)
Q Consensus 225 ~Da~~lDaPC 234 (355)
+|+..+|.|-
T Consensus 83 ~DaLk~d~~~ 92 (259)
T COG0030 83 GDALKFDFPS 92 (259)
T ss_pred CchhcCcchh
Confidence 9999888874
|
|
| >KOG1596|consensus | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00086 Score=63.10 Aligned_cols=123 Identities=20% Similarity=0.112 Sum_probs=86.5
Q ss_pred cHHHHHhh------CCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEe
Q psy7769 155 SLLPVLAL------NIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKV 225 (355)
Q Consensus 155 S~l~~~~L------~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~ 225 (355)
|-|++..| .++||.+||=++||.|..-.|++.... .|.|+|+|.|..-= |....++ -.||..+..
T Consensus 139 SKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk------RtNiiPIiE 212 (317)
T KOG1596|consen 139 SKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK------RTNIIPIIE 212 (317)
T ss_pred HHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc------cCCceeeec
Confidence 44555444 478999999999999999999999875 49999999986433 4444441 146667777
Q ss_pred ccee----------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE---eCCCCCCCCHHHHH
Q psy7769 226 GGSV----------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS---TCSLSPIQNDGVVH 292 (355)
Q Consensus 226 Da~~----------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs---TCSl~~~ENE~vV~ 292 (355)
|++. ||.-.+-.. .|+..+ -+.-+|.-+||+||-+|.| .|+-+...+|.|.+
T Consensus 213 DArhP~KYRmlVgmVDvIFaDva---------qpdq~R------ivaLNA~~FLk~gGhfvisikancidstv~ae~vFa 277 (317)
T KOG1596|consen 213 DARHPAKYRMLVGMVDVIFADVA---------QPDQAR------IVALNAQYFLKNGGHFVISIKANCIDSTVFAEAVFA 277 (317)
T ss_pred cCCCchheeeeeeeEEEEeccCC---------Cchhhh------hhhhhhhhhhccCCeEEEEEecccccccccHHHHHH
Confidence 7764 444432211 111111 3456888999999999976 79999999999988
Q ss_pred HHHHhh
Q psy7769 293 MSLKRI 298 (355)
Q Consensus 293 ~~L~~~ 298 (355)
.-.++.
T Consensus 278 ~Ev~kl 283 (317)
T KOG1596|consen 278 AEVKKL 283 (317)
T ss_pred HHHHHH
Confidence 766543
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00027 Score=66.73 Aligned_cols=78 Identities=17% Similarity=0.033 Sum_probs=58.8
Q ss_pred EEEechh-cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEE
Q psy7769 148 YYCMDGA-SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVK 224 (355)
Q Consensus 148 ~~~QD~a-S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~ 224 (355)
.|+-|.. ....+..+++.++++|||+|||+|..|..+++.. ..|+++|+++.++ +++++. . ..++.+++
T Consensus 10 ~fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~--~----~~~v~v~~ 81 (253)
T TIGR00755 10 NFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLS--L----YERLEVIE 81 (253)
T ss_pred ccCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhC--c----CCcEEEEE
Confidence 3444533 3344556678899999999999999999999886 4699999999998 666554 1 35688899
Q ss_pred ecceeeecc
Q psy7769 225 VGGSVVYST 233 (355)
Q Consensus 225 ~Da~~lDaP 233 (355)
+|+..++.+
T Consensus 82 ~D~~~~~~~ 90 (253)
T TIGR00755 82 GDALKVDLP 90 (253)
T ss_pred CchhcCChh
Confidence 998765544
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00092 Score=69.84 Aligned_cols=117 Identities=10% Similarity=-0.090 Sum_probs=74.6
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhh--cccc-ccccCcceEEEEEeccee----------
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALN--IRPY-DTVLDIHALKLVKVGGSV---------- 229 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~--l~r~-~~~~g~~~v~~~~~Da~~---------- 229 (355)
.+..+|||+|+|.|..+..+++.....+|+++|+++..+ ++++ +..+ ....+.++++++..|+..
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 345699999999999888887642226999999999999 5553 2210 000123578888888764
Q ss_pred ---eecccCCCCCccCCccccchHHHHhhhhHH--HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 230 ---VYSTCSLSPIQNDGVVHMSLKRIWEETGCE--IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 230 ---lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ--~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
+|.|.. +.+. ...+. +.++.+.+.|+|||.++..++|.. ........+.+..
T Consensus 376 vIi~D~~~~-----------~~~~----~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~--~~~~~~~~i~~~l 432 (521)
T PRK03612 376 VIIVDLPDP-----------SNPA----LGKLYSVEFYRLLKRRLAPDGLLVVQSTSPY--FAPKAFWSIEATL 432 (521)
T ss_pred EEEEeCCCC-----------CCcc----hhccchHHHHHHHHHhcCCCeEEEEecCCcc--cchHHHHHHHHHH
Confidence 333220 0000 01122 788899999999999998877543 3455555554443
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00061 Score=64.56 Aligned_cols=71 Identities=15% Similarity=0.067 Sum_probs=55.3
Q ss_pred cHHHHHhhCCCCCC--eEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcccccc--ccC--c-ceEEEEEe
Q psy7769 155 SLLPVLALNIRPYD--TVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDT--VLD--I-HALKLVKV 225 (355)
Q Consensus 155 S~l~~~~L~~~pG~--~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~--~~g--~-~~v~~~~~ 225 (355)
....+.++++++|+ +|||++||.|.-++.+|..+ +.|+++|.++.-. ++++++++.. -.+ . .++++++.
T Consensus 75 ~~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G--~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred ccHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 46778999999999 99999999999999999885 6799999999888 8888885210 001 1 45677666
Q ss_pred cc
Q psy7769 226 GG 227 (355)
Q Consensus 226 Da 227 (355)
|+
T Consensus 153 da 154 (250)
T PRK10742 153 SS 154 (250)
T ss_pred cH
Confidence 54
|
|
| >KOG1541|consensus | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.001 Score=61.92 Aligned_cols=133 Identities=15% Similarity=0.128 Sum_probs=82.4
Q ss_pred EEEechhcHHHHHhhCCCC--CCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh---HHhhccccccccCc--ceE
Q psy7769 148 YYCMDGASLLPVLALNIRP--YDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV---LALNIRPYDTVLDI--HAL 220 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~p--G~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl---l~~~l~r~~~~~g~--~~v 220 (355)
.++|-+-+.-+..+|++.+ ..-|||++||+|-.+..+.+.+ -..+++|+|++|| +.+.++- .++++- ..+
T Consensus 30 ~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~G--h~wiGvDiSpsML~~a~~~e~eg-dlil~DMG~Gl 106 (270)
T KOG1541|consen 30 VLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSG--HQWIGVDISPSMLEQAVERELEG-DLILCDMGEGL 106 (270)
T ss_pred eeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCC--ceEEeecCCHHHHHHHHHhhhhc-CeeeeecCCCC
Confidence 6789998888888888765 6689999999998887776554 4689999999999 3333330 000000 001
Q ss_pred EEE--Eeccee----eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHH
Q psy7769 221 KLV--KVGGSV----VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMS 294 (355)
Q Consensus 221 ~~~--~~Da~~----lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~ 294 (355)
-|. .+||.. |--+|-+. ...+-...++. ..+...+..|++|++.|+= ...||+++++.+
T Consensus 107 pfrpGtFDg~ISISAvQWLcnA~-----~s~~~P~~Rl~------~FF~tLy~~l~rg~raV~Q----fYpen~~q~d~i 171 (270)
T KOG1541|consen 107 PFRPGTFDGVISISAVQWLCNAD-----KSLHVPKKRLL------RFFGTLYSCLKRGARAVLQ----FYPENEAQIDMI 171 (270)
T ss_pred CCCCCccceEEEeeeeeeecccC-----ccccChHHHHH------HHhhhhhhhhccCceeEEE----ecccchHHHHHH
Confidence 010 123322 33444111 11000111121 4566788899999999873 456999999999
Q ss_pred HHhh
Q psy7769 295 LKRI 298 (355)
Q Consensus 295 L~~~ 298 (355)
+...
T Consensus 172 ~~~a 175 (270)
T KOG1541|consen 172 MQQA 175 (270)
T ss_pred HHHH
Confidence 8765
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00048 Score=62.63 Aligned_cols=97 Identities=12% Similarity=-0.020 Sum_probs=70.4
Q ss_pred CCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccCCc
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDGV 244 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~~~ 244 (355)
.+.+.|++||+|-.+..+|... -+|+|++.++.+. +.+|++ - .|..||+++.+|+...|..- .- -
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A--~rViAiE~dPk~a~~a~eN~~--v--~g~~n~evv~gDA~~y~fe~--AD----v- 99 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAA--ERVIAIEKDPKRARLAEENLH--V--PGDVNWEVVVGDARDYDFEN--AD----V- 99 (252)
T ss_pred hhceeeccCCcchHHHHHHhhh--ceEEEEecCcHHHHHhhhcCC--C--CCCcceEEEecccccccccc--cc----e-
Confidence 3799999999999888877764 6899999999999 889987 2 67789999999998766521 10 0
Q ss_pred cccchHHHHhhhhHH-HHHHHHHhhccCCcEEE
Q psy7769 245 VHMSLKRIWEETGCE-IEIKHALKLVKVGGSVV 276 (355)
Q Consensus 245 l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lV 276 (355)
+.-..-+..-+..-| ..++.++++||-.++++
T Consensus 100 vicEmlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 100 VICEMLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred eHHHHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 000000111122455 78999999999988876
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00027 Score=64.17 Aligned_cols=91 Identities=14% Similarity=0.071 Sum_probs=68.0
Q ss_pred eEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee------eecccCCCCCc
Q psy7769 169 TVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------VYSTCSLSPIQ 240 (355)
Q Consensus 169 ~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------lDaPCSgsG~t 240 (355)
+|+|+|+|.|-=++.+|-..+...++.+|.+.+|+ ++.... . ++..|+++++..+.. .|.-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~--~--L~L~nv~v~~~R~E~~~~~~~fd~v~------ 120 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVR--E--LGLSNVEVINGRAEEPEYRESFDVVT------ 120 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHH--H--HT-SSEEEEES-HHHTTTTT-EEEEE------
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHH--H--hCCCCEEEEEeeecccccCCCccEEE------
Confidence 89999999999999999888778999999999999 666666 3 577889998877654 22221
Q ss_pred cCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 241 NDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 241 ~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
.+..+.+..+++-+..++++||+++.---
T Consensus 121 -----------aRAv~~l~~l~~~~~~~l~~~G~~l~~KG 149 (184)
T PF02527_consen 121 -----------ARAVAPLDKLLELARPLLKPGGRLLAYKG 149 (184)
T ss_dssp -----------EESSSSHHHHHHHHGGGEEEEEEEEEEES
T ss_pred -----------eehhcCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 12233444789999999999998887644
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG1661|consensus | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00028 Score=65.09 Aligned_cols=106 Identities=17% Similarity=0.108 Sum_probs=73.9
Q ss_pred HHhhC--CCCCCeEeeecccCcchHHHHHHhc-CCCc-EEEEcCCchhh--HHhhccccccc--------cCcceEEEEE
Q psy7769 159 VLALN--IRPYDTVLDMCAAPGGKTLVALQTL-YPDY-YCMDGASLLPV--LALNIRPYDTV--------LDIHALKLVK 224 (355)
Q Consensus 159 ~~~L~--~~pG~~VLD~CAgPGgKT~~la~~~-~~g~-V~AvD~s~~Rl--l~~~l~r~~~~--------~g~~~v~~~~ 224 (355)
..+|+ ++||...||+++|+|..|+.++.+. .+|. ++++|..+.-+ .++|+. +.. +...++.++.
T Consensus 73 le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~--k~i~~~e~~~~~~~~~l~ivv 150 (237)
T KOG1661|consen 73 LEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLD--KDITTSESSSKLKRGELSIVV 150 (237)
T ss_pred HHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHH--hhccCchhhhhhccCceEEEe
Confidence 45555 8999999999999999999999765 3455 49999999888 777776 322 1124567888
Q ss_pred ecceeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE
Q psy7769 225 VGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 225 ~Da~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs 278 (355)
+|++..-+.|.-. +++.--+.-+++.++.+..|++||+|+.-
T Consensus 151 GDgr~g~~e~a~Y------------DaIhvGAaa~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 151 GDGRKGYAEQAPY------------DAIHVGAAASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred CCccccCCccCCc------------ceEEEccCccccHHHHHHhhccCCeEEEe
Confidence 9988755555211 11111122236677888899999999873
|
|
| >KOG4589|consensus | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0018 Score=58.95 Aligned_cols=111 Identities=21% Similarity=0.215 Sum_probs=66.7
Q ss_pred CCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhhHHhhccccccccCcceEEEEEe-cce-------------
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKV-GGS------------- 228 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rll~~~l~r~~~~~g~~~v~~~~~-Da~------------- 228 (355)
++||++|||++||||.++..+-+.. ++|.|.++|+-.-.- .+.+.++.+ |.+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p-------------~~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP-------------PEGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC-------------CCCcccccccccCCHHHHHHHHHhCC
Confidence 4689999999999999988777776 559999999743110 001111111 111
Q ss_pred --eeeccc-----CCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 229 --VVYSTC-----SLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 229 --~lDaPC-----SgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
.+|+.- -.+|+. ..+.....+|- .+|.-|+.+++|+|.+|- -+..-+.+.-.++-|..+
T Consensus 134 ~r~VdvVlSDMapnaTGvr--------~~Dh~~~i~LC~s~l~~al~~~~p~g~fvc---K~w~g~e~~~l~r~l~~~ 200 (232)
T KOG4589|consen 134 NRPVDVVLSDMAPNATGVR--------IRDHYRSIELCDSALLFALTLLIPNGSFVC---KLWDGSEEALLQRRLQAV 200 (232)
T ss_pred CCcccEEEeccCCCCcCcc--------hhhHHHHHHHHHHHHHHhhhhcCCCcEEEE---EEecCCchHHHHHHHHHH
Confidence 133332 233421 11222333444 778889999999999984 444446666666666654
|
|
| >KOG2899|consensus | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00062 Score=64.11 Aligned_cols=44 Identities=18% Similarity=0.092 Sum_probs=39.9
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
.+-.+||++|-.|-.|++||.......|+++|+++.++ ++++++
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r 103 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIR 103 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcc
Confidence 35589999999999999999988778899999999999 888887
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0014 Score=58.50 Aligned_cols=97 Identities=18% Similarity=0.039 Sum_probs=72.8
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee----------
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV---------- 229 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~---------- 229 (355)
++..|--||.++.|+|-.|-.|+..+ .+..++++|.|++-. |.+... + +.++++|+..
T Consensus 45 ~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------~---~~ii~gda~~l~~~l~e~~g 115 (194)
T COG3963 45 DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------G---VNIINGDAFDLRTTLGEHKG 115 (194)
T ss_pred CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------C---ccccccchhhHHHHHhhcCC
Confidence 67889999999999999999988765 558899999999988 544433 2 3467777643
Q ss_pred --eecccCCCCCccCCccccchHHHHhhhhHH--HHHHHHHhhccCCcEEEEEeCC
Q psy7769 230 --VYSTCSLSPIQNDGVVHMSLKRIWEETGCE--IEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 230 --lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ--~lL~~A~~~LkpGG~lVYsTCS 281 (355)
+|..-||.-+ ..+..-+ +||+.+...|.+||.+|--|-+
T Consensus 116 q~~D~viS~lPl-------------l~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 116 QFFDSVISGLPL-------------LNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred CeeeeEEecccc-------------ccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 7777666552 1111112 7899999999999999977776
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00042 Score=64.98 Aligned_cols=38 Identities=24% Similarity=0.111 Sum_probs=33.7
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
.+|..|||++||||+.|..+++.+ ..+|+|+|++..++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l 111 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQL 111 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHH
Confidence 368899999999999999999873 47899999999888
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00091 Score=65.62 Aligned_cols=60 Identities=12% Similarity=-0.128 Sum_probs=43.9
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcccccc-ccCcceEEEEEecc
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDT-VLDIHALKLVKVGG 227 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~-~~g~~~v~~~~~Da 227 (355)
+|.+|||+|||+|..+..++... ..|+++|+|+.++ ++++.+.... ..+..++.+...|.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g--~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl 206 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEG--AIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL 206 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence 68899999999999999999863 6899999999999 7777652100 00123456666664
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0039 Score=60.99 Aligned_cols=126 Identities=10% Similarity=-0.012 Sum_probs=72.2
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-eecccCCCCCccC
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV-VYSTCSLSPIQND 242 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~-lDaPCSgsG~t~~ 242 (355)
...+||++|+|.|+.+..+++.-.-.+|+.+|+++..+ +++.+.........++++++..|+.. +. .+. .+ ..+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~-~~~-~~-~yD 167 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLK-NAP-EG-TYD 167 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHh-hcc-CC-CCC
Confidence 45699999999999888887653336899999999888 55555411100123578888888753 11 000 00 000
Q ss_pred Cccc--cchHHHHhhhhH-H-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 243 GVVH--MSLKRIWEETGC-E-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 243 ~~l~--~~~~~l~~l~~l-Q-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
--+. ..+... ...+ . +.++.+.+.|+|||.++.-.-| +.-....+..+++..
T Consensus 168 vIi~D~~dp~~~--~~~L~t~ef~~~~~~~L~pgGvlv~q~~s--~~~~~~~~~~i~~tl 223 (308)
T PLN02366 168 AIIVDSSDPVGP--AQELFEKPFFESVARALRPGGVVCTQAES--MWLHMDLIEDLIAIC 223 (308)
T ss_pred EEEEcCCCCCCc--hhhhhHHHHHHHHHHhcCCCcEEEECcCC--cccchHHHHHHHHHH
Confidence 0000 011100 0111 1 7889999999999999753322 222344555555543
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0038 Score=60.56 Aligned_cols=52 Identities=15% Similarity=0.100 Sum_probs=45.6
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhcc
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
++.+|.++|+...+|.+-|-||.|-.++..++ .|+++|+|.++..+ +++++.
T Consensus 15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~ 69 (314)
T COG0275 15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLK 69 (314)
T ss_pred HHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhh
Confidence 46778899999999999999999999998875 48899999999999 666665
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0041 Score=60.15 Aligned_cols=128 Identities=14% Similarity=0.137 Sum_probs=83.1
Q ss_pred CCeEeeecccCcchHHHHHHhcCC--CcEEEEcCCchhh--HHhhccccccccCcceE-EEEEeccee------eecccC
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTLYP--DYYCMDGASLLPV--LALNIRPYDTVLDIHAL-KLVKVGGSV------VYSTCS 235 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~~~--g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v-~~~~~Da~~------lDaPCS 235 (355)
--+|||+|||+|.--+-+....+. ..|..+|.++.-+ -+..++ . .|..++ +|.++|+.. +++.-
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~--~--~gL~~i~~f~~~dAfd~~~l~~l~p~P- 210 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIA--E--RGLEDIARFEQGDAFDRDSLAALDPAP- 210 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHH--H--cCCccceEEEecCCCCHhHhhccCCCC-
Confidence 348999999999988777665543 7899999999888 566665 3 355555 899999865 33321
Q ss_pred CCCCccCCccc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceEE
Q psy7769 236 LSPIQNDGVVH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIE 307 (355)
Q Consensus 236 gsG~t~~~~l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~ 307 (355)
..++.. +-.. |....+- .+.|.....++.|||+|||+.=-+||.- +.|.++|.+|.+...|-+.
T Consensus 211 ~l~iVs-GL~ElF~Dn~lv-----~~sl~gl~~al~pgG~lIyTgQPwHPQl--e~IAr~LtsHr~g~~WvMR 275 (311)
T PF12147_consen 211 TLAIVS-GLYELFPDNDLV-----RRSLAGLARALEPGGYLIYTGQPWHPQL--EMIARVLTSHRDGKAWVMR 275 (311)
T ss_pred CEEEEe-cchhhCCcHHHH-----HHHHHHHHHHhCCCcEEEEcCCCCCcch--HHHHHHHhcccCCCceEEE
Confidence 000000 0000 1111111 1568888899999999999887787753 5788899888432334443
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.001 Score=61.85 Aligned_cols=90 Identities=14% Similarity=0.105 Sum_probs=70.1
Q ss_pred CCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-------eecccCCC
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV-------VYSTCSLS 237 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~-------lDaPCSgs 237 (355)
+.+|+|+|+|+|-=++-+|-..+...|+-+|...+|+ |+...+ . ++.+|+++++..+.. .|.-|
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~--e--L~L~nv~i~~~RaE~~~~~~~~~D~vt--- 140 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKK--E--LGLENVEIVHGRAEEFGQEKKQYDVVT--- 140 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHH--H--hCCCCeEEehhhHhhcccccccCcEEE---
Confidence 6899999999999999998666667899999999999 777766 4 577888888765543 34443
Q ss_pred CCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEE
Q psy7769 238 PIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVY 277 (355)
Q Consensus 238 G~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVY 277 (355)
.+.++.+..+++-+..++|+||.++.
T Consensus 141 --------------sRAva~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 141 --------------SRAVASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred --------------eehccchHHHHHHHHHhcccCCcchh
Confidence 23445566889999999999988763
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0015 Score=62.06 Aligned_cols=117 Identities=13% Similarity=0.042 Sum_probs=75.1
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceee
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVV 230 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~l 230 (355)
.++...++....-.+||+++++.|.-|+.+|..++ .|+|+++|.++.+. +++++++ .|. .+|+++.+|+..+
T Consensus 68 g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~----ag~~~~I~~~~G~a~e~ 143 (247)
T PLN02589 68 GQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQK----AGVAHKIDFREGPALPV 143 (247)
T ss_pred HHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH----CCCCCceEEEeccHHHH
Confidence 34444444444455999999999999999998764 58999999999998 8888883 343 6789998887541
Q ss_pred -ecccCCCCC-ccCCcccc-chHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 231 -YSTCSLSPI-QNDGVVHM-SLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 231 -DaPCSgsG~-t~~~~l~~-~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
..-+ ..|- ...-++.| +.++ . .....++.++++|+|||.||.=..
T Consensus 144 L~~l~-~~~~~~~~fD~iFiDadK--~--~Y~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 144 LDQMI-EDGKYHGTFDFIFVDADK--D--NYINYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred HHHHH-hccccCCcccEEEecCCH--H--HhHHHHHHHHHhcCCCeEEEEcCC
Confidence 1111 0010 00111111 1110 0 011667888999999999986544
|
|
| >KOG1663|consensus | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0019 Score=60.30 Aligned_cols=121 Identities=12% Similarity=0.017 Sum_probs=80.0
Q ss_pred EechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCC-CcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEe
Q psy7769 150 CMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYP-DYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKV 225 (355)
Q Consensus 150 ~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~-g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~ 225 (355)
+=+.-.++...++..-...++||++.-+|.-++..|..++. |+|+++|+++.-. ..+..+ . .|. +.|.++.+
T Consensus 57 v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k--~--agv~~KI~~i~g 132 (237)
T KOG1663|consen 57 VGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVK--L--AGVDHKITFIEG 132 (237)
T ss_pred cChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHH--h--ccccceeeeeec
Confidence 34555677777777667789999999999999999988754 9999999999988 333333 1 344 56788877
Q ss_pred ccee-eecccC--CCCCccCCc-cc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 226 GGSV-VYSTCS--LSPIQNDGV-VH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 226 Da~~-lDaPCS--gsG~t~~~~-l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
++.. +|---. ..| +.+.- +. |+..-. ...+++++++|+||.|++=.-++
T Consensus 133 ~a~esLd~l~~~~~~~-tfDfaFvDadK~nY~-------~y~e~~l~Llr~GGvi~~DNvl~ 186 (237)
T KOG1663|consen 133 PALESLDELLADGESG-TFDFAFVDADKDNYS-------NYYERLLRLLRVGGVIVVDNVLW 186 (237)
T ss_pred chhhhHHHHHhcCCCC-ceeEEEEccchHHHH-------HHHHHHHhhcccccEEEEecccc
Confidence 7643 111100 111 22222 11 222111 56889999999999999965433
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0017 Score=61.84 Aligned_cols=78 Identities=17% Similarity=0.006 Sum_probs=62.1
Q ss_pred EEechh-cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEe
Q psy7769 149 YCMDGA-SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKV 225 (355)
Q Consensus 149 ~~QD~a-S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~ 225 (355)
|+.|+. ..-.+..+++.+++.|||+++|+|..|..|+... .+|+++|.++..+ +++.+. ..++++++..
T Consensus 12 FL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~------~~~~~~vi~~ 83 (262)
T PF00398_consen 12 FLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFA------SNPNVEVING 83 (262)
T ss_dssp EEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCT------TCSSEEEEES
T ss_pred eeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhh------hcccceeeec
Confidence 455644 4456777888899999999999999999999887 7999999999888 776665 2357899999
Q ss_pred cceeeeccc
Q psy7769 226 GGSVVYSTC 234 (355)
Q Consensus 226 Da~~lDaPC 234 (355)
|+..+|.+-
T Consensus 84 D~l~~~~~~ 92 (262)
T PF00398_consen 84 DFLKWDLYD 92 (262)
T ss_dssp -TTTSCGGG
T ss_pred chhccccHH
Confidence 998766653
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >KOG1098|consensus | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00081 Score=70.27 Aligned_cols=116 Identities=19% Similarity=0.182 Sum_probs=66.4
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCC-CcEEEEcCCchhh------HHhhccc----c---ccccCcceEEEEEeccee
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYP-DYYCMDGASLLPV------LALNIRP----Y---DTVLDIHALKLVKVGGSV 229 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~-g~V~AvD~s~~Rl------l~~~l~r----~---~~~~g~~~v~~~~~Da~~ 229 (355)
++++..|||+||||||+...+++.++. +.|+++|+-+-+. +.+-+.+ . .+ +......++..||
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp~~~c~t~v~dIttd~cr~~l~k~-l~t~~advVLhDg-- 118 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKPIPNCDTLVEDITTDECRSKLRKI-LKTWKADVVLHDG-- 118 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecccCCccchhhhhhhHHHHHHHHHHH-HHhCCCcEEeecC--
Confidence 568999999999999988888887754 7799999887543 1111110 0 00 0011123444554
Q ss_pred eecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHH
Q psy7769 230 VYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLK 296 (355)
Q Consensus 230 lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~ 296 (355)
|-..| ..|..+.. ..+.|- ..|+-|..+|+.||.+|--.| +-|.-.-+-+++.
T Consensus 119 ----apnVg------~~w~~DA~-~q~~L~l~al~LA~~~l~~~g~fvtkvf---rs~dy~~ll~v~~ 172 (780)
T KOG1098|consen 119 ----APNVG------GNWVQDAF-QQACLTLRALKLATEFLAKGGTFVTKVF---RSEDYNGLLRVFG 172 (780)
T ss_pred ----CCccc------hhHHHHHH-HhhHHHHHHHHHHHHHHHhcCccccccc---cCCcchHHHHHHH
Confidence 22222 12554432 222333 778889999999999654333 3344444444443
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0014 Score=62.28 Aligned_cols=91 Identities=15% Similarity=0.076 Sum_probs=56.4
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccCC
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDG 243 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~~ 243 (355)
...++||+|||-|+.|..++... .+|+|.|.|+.|. |+++-- . +.+..+ +.+.| ...|+.+ .+-
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~rL~~kg~--~-vl~~~~--w~~~~-~~fDvIs-cLN----- 159 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRWRLSKKGF--T-VLDIDD--WQQTD-FKFDVIS-CLN----- 159 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHHHHHhCCC--e-EEehhh--hhccC-CceEEEe-ehh-----
Confidence 35689999999999999999887 5799999999887 333111 0 011111 11111 1133332 000
Q ss_pred ccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEE
Q psy7769 244 VVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 244 ~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYs 278 (355)
+-.+..-+ .+|+.+.+.|+|+|+++.+
T Consensus 160 --------vLDRc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 160 --------VLDRCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred --------hhhccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 11111222 7899999999999999865
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0053 Score=57.53 Aligned_cols=116 Identities=10% Similarity=-0.117 Sum_probs=71.3
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHh-h-cc----c--cccccCcceEEEEEecceeeec
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LAL-N-IR----P--YDTVLDIHALKLVKVGGSVVYS 232 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~-~-l~----r--~~~~~g~~~v~~~~~Da~~lDa 232 (355)
.+.+|.+||+.+||.|--...||..+ -.|+|+|+|+..+ +.+ + +. . ........++++.++|...++.
T Consensus 40 ~~~~~~rvLvPgCGkg~D~~~LA~~G--~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~ 117 (226)
T PRK13256 40 NINDSSVCLIPMCGCSIDMLFFLSKG--VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK 117 (226)
T ss_pred CCCCCCeEEEeCCCChHHHHHHHhCC--CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCc
Confidence 34467899999999999999999986 4799999999999 322 2 10 0 0000112467888999865442
Q ss_pred ccCCCCCccCCccccchHHHHhhhh-HH-HHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 233 TCSLSPIQNDGVVHMSLKRIWEETG-CE-IEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 233 PCSgsG~t~~~~l~~~~~~l~~l~~-lQ-~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
+-...| .-++.|...-+..+.. +. +-.++..++|+|||+++.-|-...
T Consensus 118 ~~~~~~---~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~ 167 (226)
T PRK13256 118 IANNLP---VFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHD 167 (226)
T ss_pred cccccC---CcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecC
Confidence 111111 0111122222222211 11 678899999999999998876543
|
|
| >KOG2361|consensus | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0016 Score=61.25 Aligned_cols=100 Identities=16% Similarity=0.086 Sum_probs=67.6
Q ss_pred eEeeecccCcchHHHHHHhcCC--CcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee---eecccCCCCCcc
Q psy7769 169 TVLDMCAAPGGKTLVALQTLYP--DYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV---VYSTCSLSPIQN 241 (355)
Q Consensus 169 ~VLD~CAgPGgKT~~la~~~~~--g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~---lDaPCSgsG~t~ 241 (355)
+||.+|||-|+...-+.+..++ -+|+|+|.|+..+ ++++.. ....++.....|... ..++|.|+=
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~-----~~e~~~~afv~Dlt~~~~~~~~~~~sv--- 145 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSG-----YDESRVEAFVWDLTSPSLKEPPEEGSV--- 145 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccc-----cchhhhcccceeccchhccCCCCcCcc---
Confidence 8999999999999988887644 7899999999999 555554 122334433444332 667775431
Q ss_pred CCc-ccc-----chHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 242 DGV-VHM-----SLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 242 ~~~-l~~-----~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
+.- +.| .|++ .|..+.+..++|||||.|++..--.
T Consensus 146 D~it~IFvLSAi~pek------~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 146 DIITLIFVLSAIHPEK------MQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred ceEEEEEEEeccChHH------HHHHHHHHHHHhCCCcEEEEeeccc
Confidence 222 111 2332 2378999999999999999875433
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.012 Score=54.84 Aligned_cols=113 Identities=12% Similarity=-0.022 Sum_probs=76.8
Q ss_pred HhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCC
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLS 237 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgs 237 (355)
...+..+..+|+|+|.|.|..+..+++..+.-+++..|. +.-+ +++ .++|+++.+|.. -+.|. +.
T Consensus 94 ~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----------~~rv~~~~gd~f-~~~P~-~D 160 (241)
T PF00891_consen 94 EAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----------ADRVEFVPGDFF-DPLPV-AD 160 (241)
T ss_dssp HHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----------TTTEEEEES-TT-TCCSS-ES
T ss_pred ccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----------ccccccccccHH-hhhcc-cc
Confidence 444566777999999999999999999888789999998 4444 333 235788888876 22232 11
Q ss_pred CCccCCc-cc-cchHHHHhhhhHHHHHHHHHhhccCC--cEEEEEeCCCCCCCCHHHHH
Q psy7769 238 PIQNDGV-VH-MSLKRIWEETGCEIEIKHALKLVKVG--GSVVYSTCSLSPIQNDGVVH 292 (355)
Q Consensus 238 G~t~~~~-l~-~~~~~l~~l~~lQ~lL~~A~~~LkpG--G~lVYsTCSl~~~ENE~vV~ 292 (355)
- ..-++ ++ |..+... .||+++.+.|+|| |+|+....-+.....+....
T Consensus 161 ~-~~l~~vLh~~~d~~~~------~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~ 212 (241)
T PF00891_consen 161 V-YLLRHVLHDWSDEDCV------KILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSA 212 (241)
T ss_dssp E-EEEESSGGGS-HHHHH------HHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHH
T ss_pred c-eeeehhhhhcchHHHH------HHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHH
Confidence 1 11222 33 6665444 7999999999999 99999988777666666554
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.002 Score=63.80 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=42.4
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhhHHhhccccccccCcceEEEEEecceeeec
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKVGGSVVYS 232 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rll~~~l~r~~~~~g~~~v~~~~~Da~~lDa 232 (355)
+.+|..+||+||+|||+|-.+++.+ ++|+|+|..+ +...+. ..++|.....|+....+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG--~~V~AVD~g~---l~~~L~------~~~~V~h~~~d~fr~~p 266 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRG--MFVTAVDNGP---MAQSLM------DTGQVEHLRADGFKFRP 266 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcC--CEEEEEechh---cCHhhh------CCCCEEEEeccCcccCC
Confidence 4689999999999999999999875 6999999554 222222 23457777777655443
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0023 Score=65.70 Aligned_cols=116 Identities=16% Similarity=0.063 Sum_probs=71.6
Q ss_pred CCeEeeecccCcchHHHHHHhc----CCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccCCCCC
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL----YPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLSPI 239 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~----~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG~ 239 (355)
+-.|||+|||.|-.+...++.+ ...+|+|+|.++... +++.++ . .+. +.|+++++|.+.++.|.-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~--~--n~w~~~V~vi~~d~r~v~lpek---- 258 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVN--A--NGWGDKVTVIHGDMREVELPEK---- 258 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHH--H--TTTTTTEEEEES-TTTSCHSS-----
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHH--h--cCCCCeEEEEeCcccCCCCCCc----
Confidence 4579999999999886665442 346899999999887 555544 2 222 569999999988666650
Q ss_pred ccCCccccchH--HHHhhhhHH-HHHHHHHhhccCCcEEEE--EeCCCCCCCCHHHHHHH
Q psy7769 240 QNDGVVHMSLK--RIWEETGCE-IEIKHALKLVKVGGSVVY--STCSLSPIQNDGVVHMS 294 (355)
Q Consensus 240 t~~~~l~~~~~--~l~~l~~lQ-~lL~~A~~~LkpGG~lVY--sTCSl~~~ENE~vV~~~ 294 (355)
-++.-+.. -+ -..++- +.|..+-++|||||+++= .|--+.|.+.+..-+..
T Consensus 259 ---vDIIVSElLGsf-g~nEl~pE~Lda~~rfLkp~Gi~IP~~~t~ylaPiss~~l~~~~ 314 (448)
T PF05185_consen 259 ---VDIIVSELLGSF-GDNELSPECLDAADRFLKPDGIMIPSSYTSYLAPISSPKLYQEV 314 (448)
T ss_dssp ---EEEEEE---BTT-BTTTSHHHHHHHGGGGEEEEEEEESSEEEEEEEEEE-HHHHHHH
T ss_pred ---eeEEEEeccCCc-cccccCHHHHHHHHhhcCCCCEEeCcchhhEEEEeeCHHHHHHH
Confidence 01110000 00 001122 789999999999999983 23345566666655554
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG0820|consensus | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.006 Score=58.44 Aligned_cols=117 Identities=15% Similarity=0.113 Sum_probs=78.0
Q ss_pred HhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCC
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLS 237 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgs 237 (355)
.-.+++|+|.||.++-|||+.|..|.+.. .+|+|+|+++.++ +.++.+ . ....+..+++.+|....|-|-++.
T Consensus 52 ~ka~~k~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~--g-tp~~~kLqV~~gD~lK~d~P~fd~ 126 (315)
T KOG0820|consen 52 EKADLKPTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQ--G-TPKSGKLQVLHGDFLKTDLPRFDG 126 (315)
T ss_pred hccCCCCCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhc--C-CCccceeeEEecccccCCCcccce
Confidence 33468999999999999999999999886 7899999999999 888887 3 133466889999998888776544
Q ss_pred CCccCCc-cc----c---chHHHH--hhhhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 238 PIQNDGV-VH----M---SLKRIW--EETGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 238 G~t~~~~-l~----~---~~~~l~--~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
-+++-.- +- + ....+. ....+| -+-|++++..=|...|+--|++
T Consensus 127 cVsNlPyqISSp~vfKLL~~~~~fr~AvlmfQ--~Efa~RLva~pgd~~Ycrlsin 180 (315)
T KOG0820|consen 127 CVSNLPYQISSPLVFKLLLHRPVFRCAVLMFQ--REFALRLVARPGDSLYCRLSIN 180 (315)
T ss_pred eeccCCccccCHHHHHhcCCCCCcceeeeehh--hhhhhhhccCCCCchhceeehh
Confidence 3332111 10 0 000000 111233 2345555555578889887775
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.017 Score=57.20 Aligned_cols=125 Identities=13% Similarity=0.036 Sum_probs=75.3
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee------
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------ 229 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------ 229 (355)
++.+..+.| .+||-++.|.|+.+..+++.....+|+++|+++..+ +++.+.........++++++..||+.
T Consensus 96 ~~l~~~~~p-k~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~ 174 (336)
T PLN02823 96 PALLHHPNP-KTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRD 174 (336)
T ss_pred HHHhhCCCC-CEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCC
Confidence 344444544 589999999999887777654446899999999999 66665410000123678888877754
Q ss_pred -------eecccCC-CCCccCCccccchHHHHhhhhHH-HHHH-HHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 230 -------VYSTCSL-SPIQNDGVVHMSLKRIWEETGCE-IEIK-HALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 230 -------lDaPCSg-sG~t~~~~l~~~~~~l~~l~~lQ-~lL~-~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
+|++-.. .|. +..+ .. +.++ .+.+.|+|||.+|.-.-|.....+...+..+++.
T Consensus 175 ~~yDvIi~D~~dp~~~~~---------~~~L-----yt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~t 238 (336)
T PLN02823 175 EKFDVIIGDLADPVEGGP---------CYQL-----YTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNT 238 (336)
T ss_pred CCccEEEecCCCccccCc---------chhh-----ccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHH
Confidence 5542100 010 0000 11 5676 7889999999988654443333344455555444
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.014 Score=53.80 Aligned_cols=45 Identities=16% Similarity=-0.026 Sum_probs=32.7
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
...+++.+++..+|+|||-|.-.+++|...+-.+.+++|+.+...
T Consensus 35 l~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~ 79 (205)
T PF08123_consen 35 LDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELH 79 (205)
T ss_dssp HHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHH
T ss_pred HHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHH
Confidence 356688999999999999999888888665546799999999988
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >KOG1975|consensus | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.008 Score=58.87 Aligned_cols=126 Identities=17% Similarity=0.136 Sum_probs=76.1
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcccccccc--CcceEEEEEeccee-
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVL--DIHALKLVKVGGSV- 229 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~--g~~~v~~~~~Da~~- 229 (355)
|+|+-..+ ++++.|+||+||-||-.+-.-.. +-+.++++|+..--+ ++++.+.+.... -+-.+.++.+|-..
T Consensus 108 s~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~ 184 (389)
T KOG1975|consen 108 SVLINLYT--KRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKE 184 (389)
T ss_pred HHHHHHHh--ccccccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchh
Confidence 66666655 57999999999999977655432 237899999988777 554443110000 01124677777543
Q ss_pred -----e--ecc-cCCCCC-ccCCccc--cchH-HHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 230 -----V--YST-CSLSPI-QNDGVVH--MSLK-RIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 230 -----l--DaP-CSgsG~-t~~~~l~--~~~~-~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
+ |.| | -+ +-...+| |..+ ... .+|+++.+.|||||.++-++- |-.||-+=|+.
T Consensus 185 ~l~d~~e~~dp~f---DivScQF~~HYaFetee~ar------~~l~Nva~~LkpGG~FIgTiP------dsd~Ii~rlr~ 249 (389)
T KOG1975|consen 185 RLMDLLEFKDPRF---DIVSCQFAFHYAFETEESAR------IALRNVAKCLKPGGVFIGTIP------DSDVIIKRLRA 249 (389)
T ss_pred HHHHhccCCCCCc---ceeeeeeeEeeeeccHHHHH------HHHHHHHhhcCCCcEEEEecC------cHHHHHHHHHh
Confidence 2 333 2 00 0011123 3222 111 679999999999999998764 45777777765
Q ss_pred h
Q psy7769 298 I 298 (355)
Q Consensus 298 ~ 298 (355)
.
T Consensus 250 ~ 250 (389)
T KOG1975|consen 250 G 250 (389)
T ss_pred c
Confidence 4
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0046 Score=57.53 Aligned_cols=117 Identities=14% Similarity=-0.038 Sum_probs=70.2
Q ss_pred hCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--H-Hhhccc--ccccc-----CcceEEEEEecceeee
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--L-ALNIRP--YDTVL-----DIHALKLVKVGGSVVY 231 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l-~~~l~r--~~~~~-----g~~~v~~~~~Da~~lD 231 (355)
+...++.+||+-+||.|.-...+|+.+ -.|+++|+|+..+ + +++... ..... ...+|.+.++|...++
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~G--~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~ 110 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQG--HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELP 110 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHTT--EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHCC--CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCC
Confidence 346788899999999999999999875 5899999999999 3 222210 00000 1245788999986655
Q ss_pred cccCC-CCCccCCc-cc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCC
Q psy7769 232 STCSL-SPIQNDGV-VH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQ 286 (355)
Q Consensus 232 aPCSg-sG~t~~~~-l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~E 286 (355)
+...| +....++. +. ..++. .++-.++..++|+|||++++.|-...+.+
T Consensus 111 ~~~~g~fD~iyDr~~l~Alpp~~------R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~ 162 (218)
T PF05724_consen 111 PEDVGKFDLIYDRTFLCALPPEM------RERYAQQLASLLKPGGRGLLITLEYPQGE 162 (218)
T ss_dssp GSCHHSEEEEEECSSTTTS-GGG------HHHHHHHHHHCEEEEEEEEEEEEES-CSC
T ss_pred hhhcCCceEEEEecccccCCHHH------HHHHHHHHHHHhCCCCcEEEEEEEcCCcC
Confidence 44310 00011222 11 12221 11668899999999999776665544333
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >KOG4300|consensus | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0061 Score=56.39 Aligned_cols=115 Identities=10% Similarity=0.079 Sum_probs=67.6
Q ss_pred hCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEE-EEEeccee--------e
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALK-LVKVGGSV--------V 230 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~-~~~~Da~~--------l 230 (355)
+.......||.++||||.---. ...-+..+|+++|.++++- +.+.++ . ....++. ++.+|+.. +
T Consensus 72 ~gk~~K~~vLEvgcGtG~Nfkf-y~~~p~~svt~lDpn~~mee~~~ks~~--E--~k~~~~~~fvva~ge~l~~l~d~s~ 146 (252)
T KOG4300|consen 72 LGKSGKGDVLEVGCGTGANFKF-YPWKPINSVTCLDPNEKMEEIADKSAA--E--KKPLQVERFVVADGENLPQLADGSY 146 (252)
T ss_pred hcccCccceEEecccCCCCccc-ccCCCCceEEEeCCcHHHHHHHHHHHh--h--ccCcceEEEEeechhcCcccccCCe
Confidence 3333344789999999974322 2222336899999999998 555554 2 1223454 77777764 3
Q ss_pred ecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 231 YSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 231 DaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
|+.--.+++ -+.+ -+ +.|++..++|||||++++-- +-...-+-..++++..
T Consensus 147 DtVV~TlvL-------CSve-------~~~k~L~e~~rlLRpgG~iifiE---Hva~~y~~~n~i~q~v 198 (252)
T KOG4300|consen 147 DTVVCTLVL-------CSVE-------DPVKQLNEVRRLLRPGGRIIFIE---HVAGEYGFWNRILQQV 198 (252)
T ss_pred eeEEEEEEE-------eccC-------CHHHHHHHHHHhcCCCcEEEEEe---cccccchHHHHHHHHH
Confidence 322111110 0111 12 67999999999999999853 2233444455555544
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.013 Score=57.73 Aligned_cols=124 Identities=8% Similarity=-0.094 Sum_probs=73.1
Q ss_pred CCCCeEeeecccCcchHHHHHHhcC----CCcEEEEcCCchhh--HHhhccccccccCcceEEE--EEeccee-eecccC
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLY----PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKL--VKVGGSV-VYSTCS 235 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~----~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~--~~~Da~~-lDaPCS 235 (355)
.++..++|+|||.|.||..|+..+. ....+++|+|...| ..+++. . ...+.+.+ +.+|... ++..+.
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~--~--~~~p~l~v~~l~gdy~~~l~~l~~ 150 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELP--L--GNFSHVRCAGLLGTYDDGLAWLKR 150 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhh--h--ccCCCeEEEEEEecHHHHHhhccc
Confidence 5677999999999999998887552 25689999999999 555555 1 12233444 5555432 121111
Q ss_pred CCCCccCCccccchHHHHhhhhHH--HHHHHHHh-hccCCcEEEEEeCCCCCCCCHHHHHHHH
Q psy7769 236 LSPIQNDGVVHMSLKRIWEETGCE--IEIKHALK-LVKVGGSVVYSTCSLSPIQNDGVVHMSL 295 (355)
Q Consensus 236 gsG~t~~~~l~~~~~~l~~l~~lQ--~lL~~A~~-~LkpGG~lVYsTCSl~~~ENE~vV~~~L 295 (355)
..+...++.+.|--..+-++..-+ .+|+...+ .|+|||.++... ....+.++|..+-
T Consensus 151 ~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~---D~~k~~~~l~~AY 210 (319)
T TIGR03439 151 PENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL---DGCKDPDKVLRAY 210 (319)
T ss_pred ccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec---CCCCCHHHHHHHh
Confidence 111011111223222233333333 78888888 999999999864 3335555555444
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0077 Score=51.07 Aligned_cols=53 Identities=15% Similarity=0.050 Sum_probs=42.3
Q ss_pred eEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEe
Q psy7769 169 TVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKV 225 (355)
Q Consensus 169 ~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~ 225 (355)
.|||+||+.|..+..++.....++|+++|.++..+ ++++++ . .+..++.+.+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~--~--n~~~~v~~~~~ 55 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVK--L--NNLPNVVLLNA 55 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHH--H--cCCCcEEEEEe
Confidence 48999999999999998887667999999999999 888877 3 23345665543
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG2730|consensus | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0062 Score=56.75 Aligned_cols=58 Identities=10% Similarity=0.054 Sum_probs=48.3
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEeccee
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSV 229 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~ 229 (355)
.-+.|+|..||-||-|++.|... ..|+++|+++-++ +++|++ - .|+ +.|+|+++|...
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~--~~VisIdiDPikIa~AkhNae--i--YGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG--PYVIAIDIDPVKIACARHNAE--V--YGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC--CeEEEEeccHHHHHHHhccce--e--ecCCceeEEEechHHH
Confidence 45689999999999999988776 6899999999999 888998 4 355 478999998643
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.016 Score=51.04 Aligned_cols=75 Identities=8% Similarity=-0.113 Sum_probs=49.1
Q ss_pred EEEcCCchhh--HHhhccccccccCcceEEEEEeccee-------eecccCCCCCccCCccccchHHHHhhhhHHHHHHH
Q psy7769 194 CMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV-------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKH 264 (355)
Q Consensus 194 ~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~-------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~ 264 (355)
+++|+|+.++ ++++.+... ..+..++.++.+|+.. +|+-.++.+ +....+.++.|++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~-~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~-------------l~~~~d~~~~l~e 66 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKA-RSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYG-------------LRNVVDRLRAMKE 66 (160)
T ss_pred CeEcCCHHHHHHHHHhhhccc-ccCCCceEEEEechhhCCCCCCCeeEEEecch-------------hhcCCCHHHHHHH
Confidence 4799999999 544443101 0112468899998764 444444443 1222233478999
Q ss_pred HHhhccCCcEEEEEeCCC
Q psy7769 265 ALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 265 A~~~LkpGG~lVYsTCSl 282 (355)
+.+.|||||.++....+.
T Consensus 67 i~rvLkpGG~l~i~d~~~ 84 (160)
T PLN02232 67 MYRVLKPGSRVSILDFNK 84 (160)
T ss_pred HHHHcCcCeEEEEEECCC
Confidence 999999999999887764
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.0058 Score=57.35 Aligned_cols=109 Identities=13% Similarity=0.055 Sum_probs=65.0
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhhHHhhccccccccCcceEEEEEecceeeecccCCCCCccC
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQND 242 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rll~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~ 242 (355)
+..+-.++||++||+|-..-.|-.+. .+++++|+|.+|+.+..-+ . .+. .+.+.|+...-..- +.+
T Consensus 122 ~~g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eK--g---~YD--~L~~Aea~~Fl~~~-----~~e 187 (287)
T COG4976 122 DLGPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEK--G---LYD--TLYVAEAVLFLEDL-----TQE 187 (287)
T ss_pred cCCccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhc--c---chH--HHHHHHHHHHhhhc-----cCC
Confidence 34456799999999999888877666 6899999999999211111 0 000 11112221100000 111
Q ss_pred Cc-cccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCC
Q psy7769 243 GV-VHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPI 285 (355)
Q Consensus 243 ~~-l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ 285 (355)
+- +.-..+-+--+..+..++-.+..+|+|||.+.||.=++.-+
T Consensus 188 r~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~ 231 (287)
T COG4976 188 RFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDD 231 (287)
T ss_pred cccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCC
Confidence 11 11112223334455588999999999999999998887544
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.0088 Score=60.16 Aligned_cols=92 Identities=23% Similarity=0.169 Sum_probs=60.5
Q ss_pred CCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhccccccccCcc--eEEEEEeccee-----------
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRPYDTVLDIH--ALKLVKVGGSV----------- 229 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~--~v~~~~~Da~~----------- 229 (355)
.+-+|||.-||+|--++..+.-+ +-.+|++||+|+..+ +++|++ . .+.. .+++.+.|+..
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~--~--N~~~~~~~~v~~~DAn~ll~~~~~~fD~ 124 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLE--L--NGLEDERIEVSNMDANVLLYSRQERFDV 124 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHH--H--CT-SGCCEEEEES-HHHHHCHSTT-EEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHh--h--ccccCceEEEehhhHHHHhhhccccCCE
Confidence 34589999999999999988764 337899999999999 899987 3 2332 47888877643
Q ss_pred eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 230 VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 230 lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
||.-+=|+- . ..|..|++.++.|| +++.|||=
T Consensus 125 IDlDPfGSp-----------~---------pfldsA~~~v~~gG-ll~vTaTD 156 (377)
T PF02005_consen 125 IDLDPFGSP-----------A---------PFLDSALQAVKDGG-LLCVTATD 156 (377)
T ss_dssp EEE--SS-------------H---------HHHHHHHHHEEEEE-EEEEEE--
T ss_pred EEeCCCCCc-----------c---------HhHHHHHHHhhcCC-EEEEeccc
Confidence 444442222 1 45999999999975 55667764
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.042 Score=53.62 Aligned_cols=112 Identities=16% Similarity=0.053 Sum_probs=65.8
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhhHH-hhccccccccCcc-eEEEEEecce-------
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLA-LNIRPYDTVLDIH-ALKLVKVGGS------- 228 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rll~-~~l~r~~~~~g~~-~v~~~~~Da~------- 228 (355)
..-.+.+-.|.+|||+||+.|..+..|+..+ ...|+++|.+..-+++ +-++ ++ .|.. .+..+ ..+.
T Consensus 107 l~p~l~~L~gk~VLDIGC~nGY~~frM~~~G-A~~ViGiDP~~lf~~QF~~i~--~~-lg~~~~~~~l-plgvE~Lp~~~ 181 (315)
T PF08003_consen 107 LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRG-AKSVIGIDPSPLFYLQFEAIK--HF-LGQDPPVFEL-PLGVEDLPNLG 181 (315)
T ss_pred HHhhhCCcCCCEEEEecCCCcHHHHHHhhcC-CCEEEEECCChHHHHHHHHHH--HH-hCCCccEEEc-CcchhhccccC
Confidence 3334445679999999999999999988775 3679999999876611 1112 11 1211 11111 0111
Q ss_pred eeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCC
Q psy7769 229 VVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQN 287 (355)
Q Consensus 229 ~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~EN 287 (355)
..|..- ..|+ +.++..--..|......|++||.||.=|--+.-.++
T Consensus 182 ~FDtVF-~MGV------------LYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~ 227 (315)
T PF08003_consen 182 AFDTVF-SMGV------------LYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDEN 227 (315)
T ss_pred CcCEEE-Eeee------------hhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCc
Confidence 133322 1232 222111116688888999999999988777655544
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.047 Score=49.17 Aligned_cols=38 Identities=16% Similarity=-0.059 Sum_probs=32.1
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
.++++|||+|||+|..+..++... ...++++|+++.++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i 49 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGV 49 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHH
Confidence 478899999999999988887653 35789999999887
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.034 Score=49.66 Aligned_cols=113 Identities=15% Similarity=0.047 Sum_probs=55.9
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccc-cCcceEEEEEeccee-eecccCCCCC
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTV-LDIHALKLVKVGGSV-VYSTCSLSPI 239 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~-~g~~~v~~~~~Da~~-lDaPCSgsG~ 239 (355)
...|.+||++|||.|--++.++.+....+|++-|.++ -+ ++.|++ .+. ....++.+...|--. ++.....
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~--~N~~~~~~~v~v~~L~Wg~~~~~~~~~--- 116 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIE--LNGSLLDGRVSVRPLDWGDELDSDLLE--- 116 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHH--TT--------EEEE--TTS-HHHHHHS---
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHH--hccccccccccCcEEEecCcccccccc---
Confidence 3468899999999998888888775557999999998 55 888888 311 011345554443211 1111100
Q ss_pred ccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 240 QNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 240 t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
....++..-.+-+..-.....+++...++++++|. +|..+...
T Consensus 117 ~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~-vl~~~~~R 159 (173)
T PF10294_consen 117 PHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGK-VLLAYKRR 159 (173)
T ss_dssp -SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TT-EEEEEE-S
T ss_pred cccCCEEEEecccchHHHHHHHHHHHHHHhCCCCE-EEEEeCEe
Confidence 00111111111111111222678888889999988 55555554
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.072 Score=53.50 Aligned_cols=115 Identities=10% Similarity=0.006 Sum_probs=76.5
Q ss_pred hhCCCCCCeEeeecccCcchHHHHHHhcCC--------------------------------C-------cEEEEcCCch
Q psy7769 161 ALNIRPYDTVLDMCAAPGGKTLVALQTLYP--------------------------------D-------YYCMDGASLL 201 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgPGgKT~~la~~~~~--------------------------------g-------~V~AvD~s~~ 201 (355)
+.+.+++..++|-.||+|...+.+|.+..+ + .++|+|+++.
T Consensus 186 lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r 265 (381)
T COG0116 186 LAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPR 265 (381)
T ss_pred HcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHH
Confidence 336778889999999999999988876521 1 3789999999
Q ss_pred hh--HHhhccccccccCc-ceEEEEEecceeeecccCCCCC--ccCCc-cccchHHHHhhhhHH-HHHHHHHhhccCCcE
Q psy7769 202 PV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLSPI--QNDGV-VHMSLKRIWEETGCE-IEIKHALKLVKVGGS 274 (355)
Q Consensus 202 Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG~--t~~~~-l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~ 274 (355)
.+ ++.|.++ .|. .-|+|.+.|+..+-.|--..|+ ++.+- .+.... .....|. ++...+.+.++--++
T Consensus 266 ~i~~Ak~NA~~----AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~--~~v~~LY~~fg~~lk~~~~~ws~ 339 (381)
T COG0116 266 HIEGAKANARA----AGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSE--ALVAKLYREFGRTLKRLLAGWSR 339 (381)
T ss_pred HHHHHHHHHHh----cCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCCh--hhHHHHHHHHHHHHHHHhcCCce
Confidence 99 8999984 455 4578999988765555211121 22111 222111 2223355 677777788887778
Q ss_pred EEEEeCC
Q psy7769 275 VVYSTCS 281 (355)
Q Consensus 275 lVYsTCS 281 (355)
.|++|-.
T Consensus 340 ~v~tt~e 346 (381)
T COG0116 340 YVFTTSE 346 (381)
T ss_pred EEEEccH
Confidence 8887643
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.016 Score=54.63 Aligned_cols=37 Identities=24% Similarity=0.112 Sum_probs=33.1
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
+|..+||++|.+||+|--+++.+. .+|+|+|+....+
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql 115 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQL 115 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCcc
Confidence 688999999999999999988753 6899999999877
|
|
| >KOG2671|consensus | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.03 Score=55.34 Aligned_cols=123 Identities=16% Similarity=0.130 Sum_probs=77.2
Q ss_pred echh-cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh---------HHhhccccccccCcceE
Q psy7769 151 MDGA-SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV---------LALNIRPYDTVLDIHAL 220 (355)
Q Consensus 151 QD~a-S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl---------l~~~l~r~~~~~g~~~v 220 (355)
+|+. |.+-+-...++||+.|.|=..|+|+.-...|.-+ +.|++-|++-..+ ++.|++ +|.....-+
T Consensus 192 mDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FG--a~viGtDIDyr~vragrg~~~si~aNFk--QYg~~~~fl 267 (421)
T KOG2671|consen 192 MDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFG--AYVIGTDIDYRTVRAGRGEDESIKANFK--QYGSSSQFL 267 (421)
T ss_pred cchhHHHHHhhhhccCCCCEEecCccccCceeeehhhhc--ceeeccccchheeecccCCCcchhHhHH--HhCCcchhh
Confidence 6654 4555566678999999999999999877766665 8899999986655 556777 432111111
Q ss_pred EE-------------EEecceeeecccCCCCC--ccCCc-----ccc----------chHHHHhhhhHH-HHHHHHHhhc
Q psy7769 221 KL-------------VKVGGSVVYSTCSLSPI--QNDGV-----VHM----------SLKRIWEETGCE-IEIKHALKLV 269 (355)
Q Consensus 221 ~~-------------~~~Da~~lDaPCSgsG~--t~~~~-----l~~----------~~~~l~~l~~lQ-~lL~~A~~~L 269 (355)
.+ ...|+..+|||- |+ ..+.. ++. .......+..+- .+|.-+.+.|
T Consensus 268 dvl~~D~sn~~~rsn~~fDaIvcDPPY---GVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L 344 (421)
T KOG2671|consen 268 DVLTADFSNPPLRSNLKFDAIVCDPPY---GVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRL 344 (421)
T ss_pred heeeecccCcchhhcceeeEEEeCCCc---chhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhh
Confidence 22 235667799997 32 01110 111 111122222333 8999999999
Q ss_pred cCCcEEEEEeC
Q psy7769 270 KVGGSVVYSTC 280 (355)
Q Consensus 270 kpGG~lVYsTC 280 (355)
.-||++|+=--
T Consensus 345 ~~ggrlv~w~p 355 (421)
T KOG2671|consen 345 VDGGRLVFWLP 355 (421)
T ss_pred hcCceEEEecC
Confidence 99999997433
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.067 Score=50.62 Aligned_cols=123 Identities=17% Similarity=0.080 Sum_probs=76.5
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee------
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------ 229 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------ 229 (355)
++.++.+ ...+||=+|.|.|+.+..++..-...+|+++|+++.-+ +++.+.........++++++..||..
T Consensus 69 ~~~~~~~-~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~ 147 (246)
T PF01564_consen 69 PPLLLHP-NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQ 147 (246)
T ss_dssp HHHHHSS-ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSS
T ss_pred hHhhcCC-CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhcc
Confidence 3455555 45699999999999888877654347899999999988 44444310000123578888888743
Q ss_pred --------eecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 230 --------VYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 230 --------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
+|++- ..|. ... -.. +.++.+.+.|+|||.++.-..| +..++..++.+.+..
T Consensus 148 ~~~yDvIi~D~~d-p~~~---------~~~-----l~t~ef~~~~~~~L~~~Gv~v~~~~~--~~~~~~~~~~i~~tl 208 (246)
T PF01564_consen 148 EEKYDVIIVDLTD-PDGP---------APN-----LFTREFYQLCKRRLKPDGVLVLQAGS--PFLHPELFKSILKTL 208 (246)
T ss_dssp ST-EEEEEEESSS-TTSC---------GGG-----GSSHHHHHHHHHHEEEEEEEEEEEEE--TTTTHHHHHHHHHHH
T ss_pred CCcccEEEEeCCC-CCCC---------ccc-----ccCHHHHHHHHhhcCCCcEEEEEccC--cccchHHHHHHHHHH
Confidence 34432 1110 000 011 7788999999999999987633 345677777766654
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG3010|consensus | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.091 Score=49.70 Aligned_cols=117 Identities=9% Similarity=-0.059 Sum_probs=65.5
Q ss_pred hCCCCCC-eEeeecccCcchHHH-HHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-------e
Q psy7769 162 LNIRPYD-TVLDMCAAPGGKTLV-ALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV-------V 230 (355)
Q Consensus 162 L~~~pG~-~VLD~CAgPGgKT~~-la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~-------l 230 (355)
....+|. ..+|++||+| +|+. +|... -.|+|.|+++.+| +++.-.. .| .. ........+... |
T Consensus 28 a~~~~~h~~a~DvG~G~G-qa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~-~y-~~-t~~~ms~~~~v~L~g~e~SV 101 (261)
T KOG3010|consen 28 ASRTEGHRLAWDVGTGNG-QAARGIAEHY--KEVIATDVSEAMLKVAKKHPPV-TY-CH-TPSTMSSDEMVDLLGGEESV 101 (261)
T ss_pred HhhCCCcceEEEeccCCC-cchHHHHHhh--hhheeecCCHHHHHHhhcCCCc-cc-cc-CCccccccccccccCCCcce
Confidence 3344555 8999999999 5554 45553 6899999999999 4433321 11 01 011222222111 4
Q ss_pred ecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC-CCCCCHHHHHHHHHhh
Q psy7769 231 YSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL-SPIQNDGVVHMSLKRI 298 (355)
Q Consensus 231 DaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl-~~~ENE~vV~~~L~~~ 298 (355)
|..-++-. +||. .+.+..+.|.+.||+.|-++-.=|.- ...-+.++..-+++.+
T Consensus 102 DlI~~Aqa------~HWF--------dle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~ 156 (261)
T KOG3010|consen 102 DLITAAQA------VHWF--------DLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLY 156 (261)
T ss_pred eeehhhhh------HHhh--------chHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHh
Confidence 43322111 4443 22266889999999888333222222 6667777777777654
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.022 Score=56.06 Aligned_cols=44 Identities=11% Similarity=-0.065 Sum_probs=39.0
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
++.+|||+|||+|+....++......+++|+|+++..+ +++|++
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~ 159 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIIS 159 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 56899999999999998888776667999999999999 888887
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.33 Score=44.76 Aligned_cols=174 Identities=15% Similarity=0.102 Sum_probs=89.3
Q ss_pred hCCCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HH--hhccccccccCcceEEEEEecceeeecccCC
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LA--LNIRPYDTVLDIHALKLVKVGGSVVYSTCSL 236 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~--~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSg 236 (355)
.+++||++|+|+--|.|.+|..++..+ .+|+|+++=..+... .+ .++.++.......|++.+-.+-..+++|---
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~ 123 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKL 123 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcc
Confidence 368999999999999999999998765 459999886555432 11 1111100001223444443333334444322
Q ss_pred CCCcc--CCc-cccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCC-----------CCCHHHHHHHHHhhhhcc
Q psy7769 237 SPIQN--DGV-VHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSP-----------IQNDGVVHMSLKRIWEET 302 (355)
Q Consensus 237 sG~t~--~~~-l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~-----------~ENE~vV~~~L~~~~~~~ 302 (355)
.+... --| ++... + .-....+....+++.|||||.++.-.-...+ --++.+|....+. .
T Consensus 124 d~~~~~~~yhdmh~k~--i-~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~vea----a 196 (238)
T COG4798 124 DLVPTAQNYHDMHNKN--I-HPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEA----A 196 (238)
T ss_pred cccccchhhhhhhccc--c-CcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHh----h
Confidence 22100 000 11100 0 0001116788999999999999875433333 2344555544443 2
Q ss_pred CceEEEecccccccccccccccccCCCccEEEEec-CCCCCCCceEEEEEEEc
Q psy7769 303 GCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQP-HLPSNFGPMYFCKFDKI 354 (355)
Q Consensus 303 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~P-~~~~~~~gfFia~l~r~ 354 (355)
|+.++-. +..+. .|.. .+|..++| ...+..| -|+=+|+|.
T Consensus 197 GFkl~ae--S~ila--------Np~D-~~~i~v~dp~~rGetD-rf~~kF~Kp 237 (238)
T COG4798 197 GFKLEAE--SEILA--------NPDD-PRGIWVFDPTIRGETD-RFTLKFRKP 237 (238)
T ss_pred cceeeee--ehhhc--------CCCC-CCceeecCccccCccc-eeEEEeecC
Confidence 4343321 11111 1222 45666444 4444444 888888875
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.072 Score=55.65 Aligned_cols=60 Identities=12% Similarity=-0.005 Sum_probs=42.3
Q ss_pred EechhcHHHHHhhCC-C-----CCCeEeeecccCcchHHHHHHhcC--------CCcEEEEcCCchhh--HHhhcc
Q psy7769 150 CMDGASLLPVLALNI-R-----PYDTVLDMCAAPGGKTLVALQTLY--------PDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 150 ~QD~aS~l~~~~L~~-~-----pG~~VLD~CAgPGgKT~~la~~~~--------~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
..+.+..++-.++.. . .+.+|||.|||+|+..+.++..+. .-.++++|+++..+ ++.++.
T Consensus 9 P~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~ 84 (524)
T TIGR02987 9 PPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLG 84 (524)
T ss_pred cHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHh
Confidence 344555555444432 1 345899999999999998886542 14689999999998 666765
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG1499|consensus | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.081 Score=52.34 Aligned_cols=108 Identities=16% Similarity=0.051 Sum_probs=70.0
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh-HHhhccccccccCcc-eEEEEEecceeeecccCCCCCccC
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV-LALNIRPYDTVLDIH-ALKLVKVGGSVVYSTCSLSPIQND 242 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl-l~~~l~r~~~~~g~~-~v~~~~~Da~~lDaPCSgsG~t~~ 242 (355)
-.|-.|||++||+|-.+...|+.+ ..+|+|+|-|.-.- +.+.++ . .+.. .|+++.+....+..|- .
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~--~--N~~~~ii~vi~gkvEdi~LP~-------e 126 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVK--D--NGLEDVITVIKGKVEDIELPV-------E 126 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHH--h--cCccceEEEeecceEEEecCc-------c
Confidence 368899999999999999888886 47899999987666 666555 3 2333 3677777666655551 0
Q ss_pred Cc-cc---cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCC
Q psy7769 243 GV-VH---MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSP 284 (355)
Q Consensus 243 ~~-l~---~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~ 284 (355)
.. +. |--.-+.--+.+-.+|-.==++|+|||.+.=++|+++-
T Consensus 127 KVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l 172 (346)
T KOG1499|consen 127 KVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPDRATLYL 172 (346)
T ss_pred ceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccccceEEE
Confidence 00 11 32211111112224455555799999999999998753
|
|
| >KOG1500|consensus | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.072 Score=52.67 Aligned_cols=114 Identities=15% Similarity=0.101 Sum_probs=65.6
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh-HHhhccccccccCcceEEEEEecceeeecccCCCCCccCCc
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV-LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDGV 244 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl-l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~~~ 244 (355)
.|..|||++||+|..+..+|+.+ ..+|+|++.|.-.- +++.++ .+. -..+|.++.+....+..|--..-+....-
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~--~N~-~~~rItVI~GKiEdieLPEk~DviISEPM 252 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVA--SNN-LADRITVIPGKIEDIELPEKVDVIISEPM 252 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHh--cCC-ccceEEEccCccccccCchhccEEEeccc
Confidence 47789999999999998888875 36899999987544 665555 311 11456666554443333321000000000
Q ss_pred --cccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe--CCCCCCCCHHH
Q psy7769 245 --VHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST--CSLSPIQNDGV 290 (355)
Q Consensus 245 --l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT--CSl~~~ENE~v 290 (355)
+.++..-+ +---+|.++|||.|.+.=+. --+-|.-+|..
T Consensus 253 G~mL~NERML-------EsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~L 295 (517)
T KOG1500|consen 253 GYMLVNERML-------ESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQL 295 (517)
T ss_pred hhhhhhHHHH-------HHHHHHHhhcCCCCcccCcccceeecccchHHH
Confidence 11222111 33557889999999886432 33445556654
|
|
| >KOG3420|consensus | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.022 Score=50.09 Aligned_cols=44 Identities=7% Similarity=-0.128 Sum_probs=35.9
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
-.|..++|+|||.|..+++.+ +.....|+++|+++..+ ..+|+.
T Consensus 47 iEgkkl~DLgcgcGmLs~a~s-m~~~e~vlGfDIdpeALEIf~rNae 92 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFS-MPKNESVLGFDIDPEALEIFTRNAE 92 (185)
T ss_pred ccCcchhhhcCchhhhHHHhh-cCCCceEEeeecCHHHHHHHhhchH
Confidence 368899999999999884443 33447899999999999 788887
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.14 Score=50.80 Aligned_cols=97 Identities=25% Similarity=0.231 Sum_probs=58.4
Q ss_pred CCCCCCeEeeecccCcch-HHHHHHhcCCCcEEEEcCCchhh-HHhh-ccccccccCc-ce-E-----EEEEecceeeec
Q psy7769 163 NIRPYDTVLDMCAAPGGK-TLVALQTLYPDYYCMDGASLLPV-LALN-IRPYDTVLDI-HA-L-----KLVKVGGSVVYS 232 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgK-T~~la~~~~~g~V~AvD~s~~Rl-l~~~-l~r~~~~~g~-~~-v-----~~~~~Da~~lDa 232 (355)
..+++++|+=+||||=|. +.++++..+..+|+++|.++.|+ +.+. ... ..+... .. . ....+.+..+=.
T Consensus 165 ~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~-~~~~~~~~~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 165 AVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA-DVVVNPSEDDAGAEILELTGGRGADVVI 243 (350)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC-eEeecCccccHHHHHHHHhCCCCCCEEE
Confidence 345666999999999555 45667777778999999999999 5444 320 000000 00 0 011111111222
Q ss_pred ccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 233 TCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 233 PCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
-|||+. ..+..|+++++|||++++.--.
T Consensus 244 e~~G~~---------------------~~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 244 EAVGSP---------------------PALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred ECCCCH---------------------HHHHHHHHHhcCCCEEEEEecc
Confidence 344322 4588999999999999986444
|
|
| >KOG0024|consensus | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.31 Score=48.03 Aligned_cols=106 Identities=18% Similarity=0.125 Sum_probs=68.1
Q ss_pred EEEechhcH-HHHHhhCCCCCCeEeeecccCcchHH-HHHHhcCCCcEEEEcCCchhh-HHhhccccccccCcceEEEE-
Q psy7769 148 YYCMDGASL-LPVLALNIRPYDTVLDMCAAPGGKTL-VALQTLYPDYYCMDGASLLPV-LALNIRPYDTVLDIHALKLV- 223 (355)
Q Consensus 148 ~~~QD~aS~-l~~~~L~~~pG~~VLD~CAgPGgKT~-~la~~~~~g~V~AvD~s~~Rl-l~~~l~r~~~~~g~~~v~~~- 223 (355)
-.+|..|-. -+...-++++|.+||=++|||=|..+ ..|+.++-.+|+..|+++.|+ +.+.+- ...+...
T Consensus 150 Al~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~G-------a~~~~~~~ 222 (354)
T KOG0024|consen 150 ALIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFG-------ATVTDPSS 222 (354)
T ss_pred ccccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhC-------CeEEeecc
Confidence 345554422 33445578999999999999966654 456667778999999999999 544443 1111111
Q ss_pred -------------Eecc---eeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 224 -------------KVGG---SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 224 -------------~~Da---~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
..++ ..+---|||.. .-++.|+..++.||++|-.-|-
T Consensus 223 ~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~---------------------~~~~aai~a~r~gGt~vlvg~g 275 (354)
T KOG0024|consen 223 HKSSPQELAELVEKALGKKQPDVTFDCSGAE---------------------VTIRAAIKATRSGGTVVLVGMG 275 (354)
T ss_pred ccccHHHHHHHHHhhccccCCCeEEEccCch---------------------HHHHHHHHHhccCCEEEEeccC
Confidence 1122 11334566654 3477889999999998876554
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.16 Score=50.76 Aligned_cols=86 Identities=19% Similarity=0.128 Sum_probs=62.5
Q ss_pred CCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-------------ee
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV-------------VY 231 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~-------------lD 231 (355)
.-.|+|.-+|+|--++.+|.-...-+|++||++++.. +++|++ . ....+..+++.|+-. +|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~--~--N~~~~~~v~n~DAN~lm~~~~~~fd~IDiD 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVR--L--NSGEDAEVINKDANALLHELHRAFDVIDID 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHH--h--cCcccceeecchHHHHHHhcCCCccEEecC
Confidence 6799999999999999988655434899999999999 888988 3 123445555555421 44
Q ss_pred cccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE
Q psy7769 232 STCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 232 aPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs 278 (355)
|= ||- . ..+..|++.++.||.|..+
T Consensus 129 PF--GSP-----------a---------PFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 129 PF--GSP-----------A---------PFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred CC--CCC-----------c---------hHHHHHHHHhhcCCEEEEE
Confidence 32 221 1 3488999999998888774
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.15 Score=48.15 Aligned_cols=73 Identities=15% Similarity=0.048 Sum_probs=46.5
Q ss_pred cHHHHHhhCCCCCC--eEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-----ceEEEEEe
Q psy7769 155 SLLPVLALNIRPYD--TVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-----HALKLVKV 225 (355)
Q Consensus 155 S~l~~~~L~~~pG~--~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-----~~v~~~~~ 225 (355)
....+.+.++++|. +|||++||-|.=++.+|..+ ++|+++|.|+-.. ++.-++++..-... .++++++.
T Consensus 62 ~~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 62 GDPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLG--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp GSHHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred ccHHHHHhCCCCCCCCEEEECCCcchHHHHHHHccC--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 45667778888775 99999999999999999764 6899999998777 55555432100111 46888888
Q ss_pred ccee
Q psy7769 226 GGSV 229 (355)
Q Consensus 226 Da~~ 229 (355)
|+..
T Consensus 140 d~~~ 143 (234)
T PF04445_consen 140 DALE 143 (234)
T ss_dssp -CCC
T ss_pred CHHH
Confidence 8765
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.096 Score=45.26 Aligned_cols=38 Identities=3% Similarity=-0.273 Sum_probs=30.5
Q ss_pred CCCCCeEeeecccCcc-hHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 164 IRPYDTVLDMCAAPGG-KTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGg-KT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
...+.+|||+|+|.|. .+..|++.+ ..|+|+|+++.++
T Consensus 14 ~~~~~kileIG~GfG~~vA~~L~~~G--~~ViaIDi~~~aV 52 (134)
T PRK04148 14 KGKNKKIVELGIGFYFKVAKKLKESG--FDVIVIDINEKAV 52 (134)
T ss_pred cccCCEEEEEEecCCHHHHHHHHHCC--CEEEEEECCHHHH
Confidence 3457899999999996 555666554 6899999999987
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.36 Score=46.81 Aligned_cols=116 Identities=14% Similarity=-0.012 Sum_probs=75.4
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee---
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV--- 229 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~--- 229 (355)
-..++....+.| .+||=++-|.|+.+-.++....-.+++.+|+++.-+ .++.+.-.......+++.++..||..
T Consensus 66 l~h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~ 144 (282)
T COG0421 66 LAHVPLLAHPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLR 144 (282)
T ss_pred HHhchhhhCCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHH
Confidence 334455556777 599999999999998888876668999999999988 55555411100113678888888764
Q ss_pred -----eecccCCCCC-ccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 230 -----VYSTCSLSPI-QNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 230 -----lDaPCSgsG~-t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
.|+-+.-+.- .+.....++. +.++.+.+.|+++|.+|.-+=|
T Consensus 145 ~~~~~fDvIi~D~tdp~gp~~~Lft~----------eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 145 DCEEKFDVIIVDSTDPVGPAEALFTE----------EFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred hCCCcCCEEEEcCCCCCCcccccCCH----------HHHHHHHHhcCCCcEEEEecCC
Confidence 3333321110 0000000111 6688999999999999988555
|
|
| >KOG2078|consensus | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.034 Score=56.28 Aligned_cols=62 Identities=19% Similarity=0.192 Sum_probs=50.6
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV 229 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~ 229 (355)
.++|+.|-|+|||-|-.++-++..+ .+|+|||.++..+ |+.|+. .+-..-.++++.+.||..
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~--crV~aNDLNpesik~Lk~ni~--lNkv~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKG--CRVYANDLNPESIKWLKANIK--LNKVDPSAIEIFNMDAKD 310 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcC--cEEEecCCCHHHHHHHHHhcc--ccccchhheeeecccHHH
Confidence 4789999999999999999888765 7999999999999 999988 311122458888888864
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.36 Score=52.45 Aligned_cols=62 Identities=11% Similarity=0.057 Sum_probs=47.8
Q ss_pred CCCCeEeeecccCcchHHHHHHhcC------------------------------------------CCcEEEEcCCchh
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLY------------------------------------------PDYYCMDGASLLP 202 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~------------------------------------------~g~V~AvD~s~~R 202 (355)
++++.++|-+||+|...+.+|.+.. ..+|+|+|+++..
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 5789999999999999988775411 1369999999999
Q ss_pred h--HHhhccccccccCc-ceEEEEEecceee
Q psy7769 203 V--LALNIRPYDTVLDI-HALKLVKVGGSVV 230 (355)
Q Consensus 203 l--l~~~l~r~~~~~g~-~~v~~~~~Da~~l 230 (355)
+ ++.|+. . .|. ..+.+.+.|...+
T Consensus 269 v~~A~~N~~--~--~g~~~~i~~~~~D~~~~ 295 (702)
T PRK11783 269 IQAARKNAR--R--AGVAELITFEVKDVADL 295 (702)
T ss_pred HHHHHHHHH--H--cCCCcceEEEeCChhhc
Confidence 9 889998 3 355 3477877777554
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.091 Score=48.96 Aligned_cols=101 Identities=15% Similarity=-0.016 Sum_probs=63.3
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcce-EEEEEecceeeecccCCCCCccC
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHA-LKLVKVGGSVVYSTCSLSPIQND 242 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~-v~~~~~Da~~lDaPCSgsG~t~~ 242 (355)
...+.||++||-|-.|-+++.-. -.+|-.+|..++-+ +++.+. . +... ..+.+.......|+ ..+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~--~---~~~~v~~~~~~gLQ~f~P~------~~~ 122 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLG--K---DNPRVGEFYCVGLQDFTPE------EGK 122 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTC--C---GGCCEEEEEES-GGG----------TT-
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhc--c---cCCCcceEEecCHhhccCC------CCc
Confidence 35699999999999998775432 16899999999988 666655 2 1111 23332222222222 011
Q ss_pred CccccchHHHHhhhhHH--HHHHHHHhhccCCcEEEEE
Q psy7769 243 GVVHMSLKRIWEETGCE--IEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 243 ~~l~~~~~~l~~l~~lQ--~lL~~A~~~LkpGG~lVYs 278 (355)
=++.|.++-+-.++.-+ +.|+++...|+|||.||.=
T Consensus 123 YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvK 160 (218)
T PF05891_consen 123 YDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVK 160 (218)
T ss_dssp EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEE
Confidence 11568888888888888 9999999999999999964
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.25 Score=45.66 Aligned_cols=124 Identities=16% Similarity=0.133 Sum_probs=71.8
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEE-EEEecceeeecccCCC-CC-c
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALK-LVKVGGSVVYSTCSLS-PI-Q 240 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~-~~~~Da~~lDaPCSgs-G~-t 240 (355)
.+.+||+++||+|-.+.+.|+.++.-.-.--|.+...+ +...+. . .+.+|+. .+..|...-+-|.... +. .
T Consensus 25 ~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~--~--~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~ 100 (204)
T PF06080_consen 25 SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIA--E--AGLPNVRPPLALDVSAPPWPWELPAPLSP 100 (204)
T ss_pred cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHH--h--cCCcccCCCeEeecCCCCCccccccccCC
Confidence 34469999999999999999988766677888888886 555554 2 2334432 2233432110111000 00 0
Q ss_pred cCCc-------cccchHHHHhhhhHHHHHHHHHhhccCCcEEE-EEeCCC---CCCCCHHHHHHHHHhh
Q psy7769 241 NDGV-------VHMSLKRIWEETGCEIEIKHALKLVKVGGSVV-YSTCSL---SPIQNDGVVHMSLKRI 298 (355)
Q Consensus 241 ~~~~-------l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lV-YsTCSl---~~~ENE~vV~~~L~~~ 298 (355)
..-+ ++..++. ..+.+++.|.++|++||.|+ |---.. +..|....-+..|+..
T Consensus 101 ~~~D~i~~~N~lHI~p~~-----~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~r 164 (204)
T PF06080_consen 101 ESFDAIFCINMLHISPWS-----AVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSR 164 (204)
T ss_pred CCcceeeehhHHHhcCHH-----HHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcC
Confidence 0001 1112221 12288999999999999987 544443 3345556677777753
|
The function of this family is unknown. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.1 Score=47.77 Aligned_cols=39 Identities=18% Similarity=-0.037 Sum_probs=32.9
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
++||.+|||+|||.|..-.+|.+. .+...+++|+++..+
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v 49 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNV 49 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHH
Confidence 578999999999999877777664 347899999999877
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.27 Score=45.36 Aligned_cols=111 Identities=13% Similarity=-0.001 Sum_probs=75.2
Q ss_pred EeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEeccee-eec------cc-CCCC
Q psy7769 170 VLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSV-VYS------TC-SLSP 238 (355)
Q Consensus 170 VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~-lDa------PC-SgsG 238 (355)
|.|+||==|.....|++.....+++|+|+++.-+ ++++++ + .+. ..|++..+||.. +++ -. .|.|
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~--~--~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMG 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIA--K--YGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMG 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHH--H--TT-TTTEEEEE-SGGGG--GGG---EEEEEEE-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH--H--cCCcccEEEEECCcccccCCCCCCCEEEEecCC
Confidence 6899999999999999876556899999999999 899998 4 243 568999999864 211 11 2333
Q ss_pred CccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceEEEec
Q psy7769 239 IQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKD 310 (355)
Q Consensus 239 ~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~~ 310 (355)
. .+- +||++....++....+|. | |..+...++.+|..+ |+.+.-..
T Consensus 77 G-----------------~lI~~ILe~~~~~~~~~~~lIL--q---P~~~~~~LR~~L~~~----gf~I~~E~ 123 (205)
T PF04816_consen 77 G-----------------ELIIEILEAGPEKLSSAKRLIL--Q---PNTHAYELRRWLYEN----GFEIIDED 123 (205)
T ss_dssp H-----------------HHHHHHHHHTGGGGTT--EEEE--E---ESS-HHHHHHHHHHT----TEEEEEEE
T ss_pred H-----------------HHHHHHHHhhHHHhccCCeEEE--e---CCCChHHHHHHHHHC----CCEEEEeE
Confidence 1 122 889999888776556665 3 447899999999864 55554433
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.14 Score=43.96 Aligned_cols=46 Identities=13% Similarity=-0.093 Sum_probs=37.4
Q ss_pred CCCCCeEeeecccCcchHHHHHHhc----CCCcEEEEcCCchhh--HHhhcc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTL----YPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~----~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
..+...|+|+|||-|..+..++..+ .+-.|+++|.++... +.++.+
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~ 74 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQ 74 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHH
Confidence 3678899999999999999999832 347899999999888 544444
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.14 Score=49.22 Aligned_cols=69 Identities=14% Similarity=0.034 Sum_probs=46.3
Q ss_pred eEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEE----EEEecceeeecccCCCC
Q psy7769 169 TVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALK----LVKVGGSVVYSTCSLSP 238 (355)
Q Consensus 169 ~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~----~~~~Da~~lDaPCSgsG 238 (355)
+|+|++||.||.+..+.+.+ --.|+|+|+++..+ .+.|....-+...+..+. .-..|....++||.+..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS 76 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGFPCQPFS 76 (275)
T ss_pred cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCCCChhhh
Confidence 69999999999988877654 24689999999999 777765211111122221 12345566999997765
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.13 Score=44.82 Aligned_cols=98 Identities=14% Similarity=0.089 Sum_probs=53.9
Q ss_pred cEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecce---------eeecccCCCCCccCCccccchHHHHhhhhHH
Q psy7769 192 YYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGS---------VVYSTCSLSPIQNDGVVHMSLKRIWEETGCE 259 (355)
Q Consensus 192 ~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~---------~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ 259 (355)
+|+|+|+.+..+ .+++++ . .+. .++.++...=. .+|+-+=.+|....++ ..+.....--
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~--~--~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggD-----k~i~T~~~TT 71 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLE--E--AGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGD-----KSITTKPETT 71 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHH--H--TT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS------TTSB--HHHH
T ss_pred CEEEEECHHHHHHHHHHHHH--h--cCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCC-----CCCCcCcHHH
Confidence 589999999999 777777 3 233 35666653321 1444443334210000 0111111111
Q ss_pred -HHHHHHHhhccCCcEEEEEeCCCCC--CCCHHHHHHHHHhh
Q psy7769 260 -IEIKHALKLVKVGGSVVYSTCSLSP--IQNDGVVHMSLKRI 298 (355)
Q Consensus 260 -~lL~~A~~~LkpGG~lVYsTCSl~~--~ENE~vV~~~L~~~ 298 (355)
..|+.|+++|+|||.|+...-.=++ .|..+.|..|++..
T Consensus 72 l~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L 113 (140)
T PF06962_consen 72 LKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASL 113 (140)
T ss_dssp HHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhC
Confidence 6799999999999999987777676 24445556666653
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=92.15 E-value=0.21 Score=46.67 Aligned_cols=58 Identities=17% Similarity=-0.043 Sum_probs=41.4
Q ss_pred chhcHHHHHhhCCCC---CCeEeeecccCcchHHHHHHhcCC--CcEEEEcCCchhh--HHhhcc
Q psy7769 152 DGASLLPVLALNIRP---YDTVLDMCAAPGGKTLVALQTLYP--DYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 152 D~aS~l~~~~L~~~p---G~~VLD~CAgPGgKT~~la~~~~~--g~V~AvD~s~~Rl--l~~~l~ 209 (355)
-.+|-+...+|...+ .-.++|-|||.|+..+.+.-+... ..|+|-|+++..+ +++|+.
T Consensus 34 RLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 34 RLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp HHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 455666666665443 338999999999998887765432 6899999999999 777875
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.13 Score=47.39 Aligned_cols=57 Identities=14% Similarity=0.030 Sum_probs=43.4
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS 228 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~ 228 (355)
.|-+|||+|||+|--++..+..+ ...|++.|+.+... ++-|.+ . +.-++.++..|..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~--a---ngv~i~~~~~d~~ 137 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAA--A---NGVSILFTHADLI 137 (218)
T ss_pred ccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchh--h---ccceeEEeecccc
Confidence 58899999999999887776654 36899999998777 777777 3 3345677777753
|
|
| >KOG1253|consensus | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.11 Score=53.68 Aligned_cols=92 Identities=17% Similarity=0.099 Sum_probs=65.2
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCC-CcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecc------------
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYP-DYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGG------------ 227 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~-g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da------------ 227 (355)
-.++-+|||+-+|+|--++..|..++. +.|+|+|.++..+ .++|++ . .+. ..|+....|+
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~--~--N~v~~ive~~~~DA~~lM~~~~~~~~ 182 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVE--L--NGVEDIVEPHHSDANVLMYEHPMVAK 182 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhh--h--cCchhhcccccchHHHHHHhcccccc
Confidence 346779999999999999999986654 7899999999999 888887 2 122 2233444443
Q ss_pred ----eeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 228 ----SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 228 ----~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
..+||-=|.+ ..|+.|++.++.||. ++.|||=
T Consensus 183 ~FDvIDLDPyGs~s----------------------~FLDsAvqav~~gGL-L~vT~TD 218 (525)
T KOG1253|consen 183 FFDVIDLDPYGSPS----------------------PFLDSAVQAVRDGGL-LCVTCTD 218 (525)
T ss_pred ccceEecCCCCCcc----------------------HHHHHHHHHhhcCCE-EEEEecc
Confidence 3355432111 459999999999875 5668873
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=91.62 E-value=1.9 Score=33.76 Aligned_cols=99 Identities=17% Similarity=0.122 Sum_probs=58.7
Q ss_pred EeeecccCcchHHHHHHhcCC-CcEEEEcCCchhh-H-HhhccccccccCcceEEEEEeccee----------eecccCC
Q psy7769 170 VLDMCAAPGGKTLVALQTLYP-DYYCMDGASLLPV-L-ALNIRPYDTVLDIHALKLVKVGGSV----------VYSTCSL 236 (355)
Q Consensus 170 VLD~CAgPGgKT~~la~~~~~-g~V~AvD~s~~Rl-l-~~~l~r~~~~~g~~~v~~~~~Da~~----------lDaPCSg 236 (355)
++|++||+|..+ .++..... ..++++|.+...+ . ..... . .+...+.+...|... +|..++.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAE--G--AGLGLVDFVVADALGGVLPFEDSASFDLVISL 126 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhh--h--cCCCceEEEEeccccCCCCCCCCCceeEEeee
Confidence 999999999987 55555433 3788899999888 4 22211 0 011113444444322 2222211
Q ss_pred CCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCC
Q psy7769 237 SPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQN 287 (355)
Q Consensus 237 sG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~EN 287 (355)
.. ..+.. ....+..+.+.++|||.+++++........
T Consensus 127 ~~------~~~~~--------~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 163 (257)
T COG0500 127 LV------LHLLP--------PAKALRELLRVLKPGGRLVLSDLLRDGLLE 163 (257)
T ss_pred ee------hhcCC--------HHHHHHHHHHhcCCCcEEEEEeccCCCCcc
Confidence 11 00111 227789999999999999999888765544
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=91.39 E-value=0.87 Score=47.44 Aligned_cols=146 Identities=17% Similarity=0.119 Sum_probs=87.0
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC----CCcEEEEcCCchhh--HHhhccccccccCcc-eE
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY----PDYYCMDGASLLPV--LALNIRPYDTVLDIH-AL 220 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~----~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~-~v 220 (355)
||-=-.-+-+.+.+|.|+++.+|+|-|||+||.-+..+..+. ...+++.|++.... .+-|+- +.|+. ++
T Consensus 168 fyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~----lhgi~~~~ 243 (489)
T COG0286 168 FYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLI----LHGIEGDA 243 (489)
T ss_pred cCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHH----HhCCCccc
Confidence 554444566778888889999999999999999988887653 26699999988877 333332 12222 11
Q ss_pred EE-----------------EEecceeeecccCCCCCccCC--c---cccchHH-HHhhhhH-HHHHHHHHhhccCCcE--
Q psy7769 221 KL-----------------VKVGGSVVYSTCSLSPIQNDG--V---VHMSLKR-IWEETGC-EIEIKHALKLVKVGGS-- 274 (355)
Q Consensus 221 ~~-----------------~~~Da~~lDaPCSgsG~t~~~--~---l~~~~~~-l~~l~~l-Q~lL~~A~~~LkpGG~-- 274 (355)
.+ -.+|...-.||-|+.|..+.. . .++.... ......- -.-+.|.+..|+|||+
T Consensus 244 ~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aa 323 (489)
T COG0286 244 NIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAA 323 (489)
T ss_pred cccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEE
Confidence 11 112334467898866632221 1 1100000 0000000 1457888889998764
Q ss_pred EEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 275 VVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 275 lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
+|...-.++..-+|..|++.|-.
T Consensus 324 ivl~~gvlfr~~~e~~IR~~l~~ 346 (489)
T COG0286 324 IVLPDGVLFRGGAEKDIRKDLLE 346 (489)
T ss_pred EEecCCcCcCCCchHHHHHHHHh
Confidence 33445555555589999988754
|
|
| >KOG3115|consensus | Back alignment and domain information |
|---|
Probab=91.10 E-value=0.47 Score=44.01 Aligned_cols=109 Identities=8% Similarity=-0.078 Sum_probs=64.1
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccc---cCcceEEEEEeccee-----------
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTV---LDIHALKLVKVGGSV----------- 229 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~---~g~~~v~~~~~Da~~----------- 229 (355)
..-.+.|++||-||....++...+...|.+.++.-.=. ++.+++.++.. -...|+-+....+..
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 44579999999999999999887777788888765443 44444422100 113555555544432
Q ss_pred -eecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCC
Q psy7769 230 -VYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 230 -lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
-+.-| ..+.|. .. +......++ .++.+-.-+|++||.++++|=-.
T Consensus 140 skmff~-----fpdpHf--k~-~khk~rii~~~l~~eyay~l~~gg~~ytitDv~ 186 (249)
T KOG3115|consen 140 SKMFFL-----FPDPHF--KA-RKHKWRIITSTLLSEYAYVLREGGILYTITDVK 186 (249)
T ss_pred ccceee-----cCChhH--hh-hhccceeechhHHHHHHhhhhcCceEEEEeeHH
Confidence 12222 222221 11 111111223 77888888999999999887443
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.63 E-value=0.32 Score=46.77 Aligned_cols=43 Identities=14% Similarity=-0.062 Sum_probs=32.9
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
.+||.|||-++|+|..+ .+|..++ -+-+++|+++.-+ +++++.
T Consensus 207 ~~GD~VLDPF~GSGTT~-~AA~~lg-R~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTG-AVAKASG-RKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred CCCCEEEECCCCCcHHH-HHHHHcC-CCEEEEeCCHHHHHHHHHHHH
Confidence 68999999999999744 3444432 5799999999888 666654
|
|
| >KOG3178|consensus | Back alignment and domain information |
|---|
Probab=90.21 E-value=0.87 Score=45.19 Aligned_cols=105 Identities=13% Similarity=-0.035 Sum_probs=68.0
Q ss_pred HhhCCCCC----CeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecc
Q psy7769 160 LALNIRPY----DTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYST 233 (355)
Q Consensus 160 ~~L~~~pG----~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaP 233 (355)
..+....| ...+|+++|.|..+-++....+ +|-+++.+..-+ .+..+. +| |..+.+|+. .|.|
T Consensus 167 ~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~-----~g---V~~v~gdmf-q~~P 235 (342)
T KOG3178|consen 167 KILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA-----PG---VEHVAGDMF-QDTP 235 (342)
T ss_pred hhhhhhcccccCceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc-----CC---cceeccccc-ccCC
Confidence 34444456 7899999999999999888543 477777777666 333332 23 566666765 4566
Q ss_pred cCCCCCccCCccccchHHHHhhhhHH--HHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 234 CSLSPIQNDGVVHMSLKRIWEETGCE--IEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 234 CSgsG~t~~~~l~~~~~~l~~l~~lQ--~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
- .+ +.|-.+-+.....-. ++|+++++.|+|||.|+..-+-+.
T Consensus 236 ~------~d--aI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 236 K------GD--AIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred C------cC--eEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 3 11 222222222222223 799999999999999999888444
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=89.57 E-value=0.7 Score=42.80 Aligned_cols=121 Identities=13% Similarity=0.105 Sum_probs=54.7
Q ss_pred EEechhcHHHHHhh--CCCCCCeEeeecccCcchHHHHHHhc----CCCcEEEEcCCchhhHHhhccccccccCcceEEE
Q psy7769 149 YCMDGASLLPVLAL--NIRPYDTVLDMCAAPGGKTLVALQTL----YPDYYCMDGASLLPVLALNIRPYDTVLDIHALKL 222 (355)
Q Consensus 149 ~~QD~aS~l~~~~L--~~~pG~~VLD~CAgPGgKT~~la~~~----~~g~V~AvD~s~~Rll~~~l~r~~~~~g~~~v~~ 222 (355)
.+|.+-=+++-..| .++| +.|+.+|.+-||-+...|.++ ..++|+++|++....-+..++ .. +-.++|++
T Consensus 14 i~q~P~Dm~~~qeli~~~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e--~h-p~~~rI~~ 89 (206)
T PF04989_consen 14 IIQYPQDMVAYQELIWELKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIE--SH-PMSPRITF 89 (206)
T ss_dssp ESS-HHHHHHHHHHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGG--G-----TTEEE
T ss_pred hhcCHHHHHHHHHHHHHhCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHh--hc-cccCceEE
Confidence 34544444443333 3455 499999999999998877543 569999999976554112222 00 11256889
Q ss_pred EEeccee---eecccCCCCCccCCcc-ccchHHHHhhhhHH-HHHHHHHhhccCCcEEEE
Q psy7769 223 VKVGGSV---VYSTCSLSPIQNDGVV-HMSLKRIWEETGCE-IEIKHALKLVKVGGSVVY 277 (355)
Q Consensus 223 ~~~Da~~---lDaPCSgsG~t~~~~l-~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVY 277 (355)
+.+|... ++....-.. ...+.+ ..+.. +...-. ..|+.-..++.+|+++|.
T Consensus 90 i~Gds~d~~~~~~v~~~~~-~~~~vlVilDs~---H~~~hvl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 90 IQGDSIDPEIVDQVRELAS-PPHPVLVILDSS---HTHEHVLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp EES-SSSTHHHHTSGSS-----SSEEEEESS-------SSHHHHHHHHHHT--TT-EEEE
T ss_pred EECCCCCHHHHHHHHHhhc-cCCceEEEECCC---ccHHHHHHHHHHhCccCCCCCEEEE
Confidence 9988754 222221110 001111 11110 000111 457778899999999874
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=89.53 E-value=0.57 Score=37.63 Aligned_cols=85 Identities=14% Similarity=0.125 Sum_probs=31.4
Q ss_pred eeecccCcchHHHHHHhcCC---CcEEEEcCCchhh-HHhhccccccccCc-ceEEEEEeccee--------------ee
Q psy7769 171 LDMCAAPGGKTLVALQTLYP---DYYCMDGASLLPV-LALNIRPYDTVLDI-HALKLVKVGGSV--------------VY 231 (355)
Q Consensus 171 LD~CAgPGgKT~~la~~~~~---g~V~AvD~s~~Rl-l~~~l~r~~~~~g~-~~v~~~~~Da~~--------------lD 231 (355)
|+++++.|..|..+++.+.. ++++++|..+..- .++.+++ .+. .+++++.+|... +|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~----~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iD 76 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK----AGLSDRVEFIQGDSPDFLPSLPDGPIDLIFID 76 (106)
T ss_dssp --------------------------EEEESS----------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh----cCCCCeEEEEEcCcHHHHHHcCCCCEEEEEEC
Confidence 56888999999998876533 4899999999511 3333331 122 357888777643 22
Q ss_pred cccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE
Q psy7769 232 STCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 232 aPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs 278 (355)
+.= +.+. ...-++.+++.|+|||.||+=
T Consensus 77 g~H-------------~~~~------~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 77 GDH-------------SYEA------VLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp S----------------HHH------HHHHHHHHGGGEEEEEEEEEE
T ss_pred CCC-------------CHHH------HHHHHHHHHHHcCCCeEEEEe
Confidence 221 0000 115689999999999999874
|
|
| >KOG3987|consensus | Back alignment and domain information |
|---|
Probab=89.08 E-value=0.16 Score=47.27 Aligned_cols=35 Identities=26% Similarity=0.117 Sum_probs=30.5
Q ss_pred CCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
..++||++||-|-.|.+++... .+|+|-+.|..|.
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr 147 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMR 147 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHH
Confidence 3589999999999999998776 5799999998876
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=89.07 E-value=2.2 Score=41.49 Aligned_cols=88 Identities=10% Similarity=-0.060 Sum_probs=50.2
Q ss_pred hCCCCCCeEeeecccCcch-HHHHHHhcCCCcEEEEcCCchhh-HHhhccccccccCcceEE-EEEe--cceeeecccCC
Q psy7769 162 LNIRPYDTVLDMCAAPGGK-TLVALQTLYPDYYCMDGASLLPV-LALNIRPYDTVLDIHALK-LVKV--GGSVVYSTCSL 236 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgK-T~~la~~~~~g~V~AvD~s~~Rl-l~~~l~r~~~~~g~~~v~-~~~~--Da~~lDaPCSg 236 (355)
.++++|++||=.++|+-|. +.++|+..+ .+|++++.++.++ +.+.+ |...+. .... ++..++.-|++
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G-~~vi~~~~~~~~~~~a~~~-------Ga~~vi~~~~~~~~~~d~~i~~~~ 232 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQG-ATVHVMTRGAAARRLALAL-------GAASAGGAYDTPPEPLDAAILFAP 232 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCC-CeEEEEeCChHHHHHHHHh-------CCceeccccccCcccceEEEECCC
Confidence 4678999999887543322 233444442 5799999999888 33322 221110 0000 11112223333
Q ss_pred CCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE
Q psy7769 237 SPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 237 sG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs 278 (355)
.| ..+..+++.+++||+++..
T Consensus 233 ~~---------------------~~~~~~~~~l~~~G~~v~~ 253 (329)
T TIGR02822 233 AG---------------------GLVPPALEALDRGGVLAVA 253 (329)
T ss_pred cH---------------------HHHHHHHHhhCCCcEEEEE
Confidence 33 4588899999999999764
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=88.87 E-value=2 Score=39.98 Aligned_cols=126 Identities=16% Similarity=0.107 Sum_probs=58.0
Q ss_pred EEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCC-CcEEEEcCCchhh--HHhhccccccccCcceEEEEEe
Q psy7769 149 YCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYP-DYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKV 225 (355)
Q Consensus 149 ~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~-g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~ 225 (355)
|..++--.++-.+....++..|-|+|||-+..+ +...+ -.|..+|..+..- ..-++...- +....+.
T Consensus 55 WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la----~~~~~~~~V~SfDLva~n~~Vtacdia~vP--L~~~svD---- 124 (219)
T PF05148_consen 55 WPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLA----KAVPNKHKVHSFDLVAPNPRVTACDIANVP--LEDESVD---- 124 (219)
T ss_dssp SSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHH----HH--S---EEEEESS-SSTTEEES-TTS-S----TT-EE----
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEECCCchHHHH----HhcccCceEEEeeccCCCCCEEEecCccCc--CCCCcee----
Confidence 444555555555555555679999999988655 33322 4688888765321 111111000 0001111
Q ss_pred cceeeeccc-CCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe-CCCCCCCCHHHHHHHHHhhhhccC
Q psy7769 226 GGSVVYSTC-SLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST-CSLSPIQNDGVVHMSLKRIWEETG 303 (355)
Q Consensus 226 Da~~lDaPC-SgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT-CSl~~~ENE~vV~~~L~~~~~~~~ 303 (355)
+=+=| |-.| ++....|.+|.|.|||||.|..+- +|= .+|. +.|++.. ...|
T Consensus 125 ----v~VfcLSLMG-----------------Tn~~~fi~EA~RvLK~~G~L~IAEV~SR--f~~~---~~F~~~~-~~~G 177 (219)
T PF05148_consen 125 ----VAVFCLSLMG-----------------TNWPDFIREANRVLKPGGILKIAEVKSR--FENV---KQFIKAL-KKLG 177 (219)
T ss_dssp ----EEEEES---S-----------------S-HHHHHHHHHHHEEEEEEEEEEEEGGG---S-H---HHHHHHH-HCTT
T ss_pred ----EEEEEhhhhC-----------------CCcHHHHHHHHheeccCcEEEEEEeccc--CcCH---HHHHHHH-HHCC
Confidence 11223 1123 122367999999999999998774 333 3343 4444433 2467
Q ss_pred ceEEEecc
Q psy7769 304 CEIEIKDL 311 (355)
Q Consensus 304 ~~~~~~~l 311 (355)
+++.-.+.
T Consensus 178 F~~~~~d~ 185 (219)
T PF05148_consen 178 FKLKSKDE 185 (219)
T ss_dssp EEEEEEE-
T ss_pred CeEEeccc
Confidence 66655443
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >KOG3191|consensus | Back alignment and domain information |
|---|
Probab=88.81 E-value=0.65 Score=42.39 Aligned_cols=119 Identities=8% Similarity=0.003 Sum_probs=69.2
Q ss_pred CCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc-----------eeeec
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG-----------SVVYS 232 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da-----------~~lDa 232 (355)
-..+|+++||+|..++.+++.. ++...+|.|+++..+ -.+.++ . +..++.+++.|- ..+.+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~--~---n~~~~~~V~tdl~~~l~~~~VDvLvfNP 118 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETAR--C---NRVHIDVVRTDLLSGLRNESVDVLVFNP 118 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHH--h---cCCccceeehhHHhhhccCCccEEEECC
Confidence 4689999999999999999865 447789999999999 334333 1 111233443332 22333
Q ss_pred ccCCCCCccCCcc-------ccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 233 TCSLSPIQNDGVV-------HMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 233 PCSgsG~t~~~~l-------~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
|--- +.+..+ .|.-. ..-+.-.+++|...-.+|.|-|.+...+|.-+ +..-|-++++.
T Consensus 119 PYVp---t~~~~i~~~~i~~a~aGG-~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N---~p~ei~k~l~~ 183 (209)
T KOG3191|consen 119 PYVP---TSDEEIGDEGIASAWAGG-KDGREVTDRLLPQVPDILSPRGVFYLVALRAN---KPKEILKILEK 183 (209)
T ss_pred CcCc---CCcccchhHHHHHHHhcC-cchHHHHHHHHhhhhhhcCcCceEEeeehhhc---CHHHHHHHHhh
Confidence 3300 000001 12210 00111233788888889999999988888653 33334446654
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=88.30 E-value=0.59 Score=42.00 Aligned_cols=38 Identities=32% Similarity=0.178 Sum_probs=26.2
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
-.+|+.|||-+||+|. |+++|..++ -+-+++|+++.-+
T Consensus 189 t~~gdiVlDpF~GSGT-T~~aa~~l~-R~~ig~E~~~~y~ 226 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGT-TAVAAEELG-RRYIGIEIDEEYC 226 (231)
T ss_dssp S-TT-EEEETT-TTTH-HHHHHHHTT--EEEEEESSHHHH
T ss_pred hccceeeehhhhccCh-HHHHHHHcC-CeEEEEeCCHHHH
Confidence 4689999999999997 444444443 4699999998766
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=88.01 E-value=1.4 Score=42.73 Aligned_cols=36 Identities=14% Similarity=-0.047 Sum_probs=27.3
Q ss_pred CeEeeecccCcchHHHHHHh----cC----CCcEEEEcCCchhh
Q psy7769 168 DTVLDMCAAPGGKTLVALQT----LY----PDYYCMDGASLLPV 203 (355)
Q Consensus 168 ~~VLD~CAgPGgKT~~la~~----~~----~g~V~AvD~s~~Rl 203 (355)
-+||.++|++|-=.--||.+ .. .-+|+|.|+|...+
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL 160 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVL 160 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHH
Confidence 59999999999765444432 21 24699999999998
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=87.59 E-value=2.6 Score=41.90 Aligned_cols=43 Identities=16% Similarity=0.043 Sum_probs=33.1
Q ss_pred hhCCCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 161 ALNIRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
.+.+++|++||..++|+ |..+.++|+..+...|+++|.++.++
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~ 222 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERL 222 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH
Confidence 45678899999997766 55666777766434699999999888
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.07 E-value=0.62 Score=44.83 Aligned_cols=57 Identities=16% Similarity=0.168 Sum_probs=41.3
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhhHHhhccccccccCcceEEEEEecceeee
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKVGGSVVY 231 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rll~~~l~r~~~~~g~~~v~~~~~Da~~lD 231 (355)
+.||+.-.|++|+|||.|-++.... -.|+|+|.-+-+ .++ ++.+.|+-...||...-
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr~--m~V~aVDng~ma---~sL------~dtg~v~h~r~DGfk~~ 265 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKRN--MRVYAVDNGPMA---QSL------MDTGQVTHLREDGFKFR 265 (358)
T ss_pred hcCCceeeecccCCCccchhhhhcc--eEEEEeccchhh---hhh------hcccceeeeeccCcccc
Confidence 4689999999999999999988764 589999976632 222 23345666777776533
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.79 E-value=3.5 Score=41.08 Aligned_cols=46 Identities=17% Similarity=0.039 Sum_probs=33.5
Q ss_pred hCCCCCCeEeeeccc-CcchHHHHHHhcCCCcEEEEcCCchhh-HHhhc
Q psy7769 162 LNIRPYDTVLDMCAA-PGGKTLVALQTLYPDYYCMDGASLLPV-LALNI 208 (355)
Q Consensus 162 L~~~pG~~VLD~CAg-PGgKT~~la~~~~~g~V~AvD~s~~Rl-l~~~l 208 (355)
.+++||++|+=.++| -|..++++|..+. .+|+|+|++++.+ +.+.+
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~l 209 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKL 209 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHh
Confidence 457899999988887 2334455666454 8999999999988 44444
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=85.28 E-value=1.1 Score=41.80 Aligned_cols=44 Identities=23% Similarity=0.095 Sum_probs=32.3
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
-.+|+.|||-++|+|....+..++. -+.+++|+++.-. +.++++
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~~--r~~~g~e~~~~y~~~~~~r~~ 206 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQSG--RRYIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHcC--CCEEEEecCHHHHHHHHHHHH
Confidence 4689999999999997444433332 5789999999877 555554
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=85.01 E-value=1.5 Score=40.19 Aligned_cols=107 Identities=7% Similarity=-0.051 Sum_probs=51.9
Q ss_pred CCeEeeecccCcchHHHHHHh----cC-----CCcEEEEcCCchhh--HHhhc------ccc------ccc---cC----
Q psy7769 167 YDTVLDMCAAPGGKTLVALQT----LY-----PDYYCMDGASLLPV--LALNI------RPY------DTV---LD---- 216 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~----~~-----~g~V~AvD~s~~Rl--l~~~l------~r~------~~~---~g---- 216 (355)
--+||.++|++|-=+--||.+ .. .-+|+|.|+|...+ +++-. +.+ +|. .+
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 358999999999765444422 11 14899999999998 43211 100 110 00
Q ss_pred c-----ceEEEEEecceeeecccCCCCCccCCc-cc-cchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeC
Q psy7769 217 I-----HALKLVKVGGSVVYSTCSLSPIQNDGV-VH-MSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 217 ~-----~~v~~~~~Da~~lDaPCSgsG~t~~~~-l~-~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTC 280 (355)
+ .+|.|...|-...+++-..+-+...|+ +. ++++ .| ++++...+.|+|||.|+-...
T Consensus 112 v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~-------~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPE-------TQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp E-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HH-------HHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred EChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHH-------HHHHHHHHHHHHcCCCCEEEEecC
Confidence 0 224455544432112211111111222 11 3332 33 899999999999999998644
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >KOG2782|consensus | Back alignment and domain information |
|---|
Probab=84.34 E-value=0.92 Score=42.57 Aligned_cols=46 Identities=17% Similarity=0.008 Sum_probs=41.4
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
++..|.|.+|...+||.-|.||.|..|.+.....+++|.|.++-.-
T Consensus 35 vl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~ 80 (303)
T KOG2782|consen 35 VLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVAR 80 (303)
T ss_pred HHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHH
Confidence 4677889999999999999999999999988778999999998665
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=83.75 E-value=0.96 Score=46.99 Aligned_cols=98 Identities=13% Similarity=0.095 Sum_probs=51.8
Q ss_pred eEeeecccCcchHHHHHHhcCC-CcEEEEcCCchhh---HHhhccccccccCc-ceEEEEEecceeeec-ccCCCCCccC
Q psy7769 169 TVLDMCAAPGGKTLVALQTLYP-DYYCMDGASLLPV---LALNIRPYDTVLDI-HALKLVKVGGSVVYS-TCSLSPIQND 242 (355)
Q Consensus 169 ~VLD~CAgPGgKT~~la~~~~~-g~V~AvD~s~~Rl---l~~~l~r~~~~~g~-~~v~~~~~Da~~lDa-PCSgsG~t~~ 242 (355)
.+||++||.|+++..|....=. -.+...|.++... +++-+- .+ .+. ..-++--.|.. +|. =||.-.
T Consensus 120 ~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvp--a~-~~~~~s~rLPfp~~~-fDmvHcsrc~---- 191 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVP--AM-IGVLGSQRLPFPSNA-FDMVHCSRCL---- 191 (506)
T ss_pred EEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcc--hh-hhhhccccccCCccc-hhhhhccccc----
Confidence 6899999999999998875310 1122234444333 222221 00 000 00011111111 222 243322
Q ss_pred CccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 243 GVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 243 ~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
+.|.+..- -+|-+.-|+|+|||.+|+|.--++
T Consensus 192 --i~W~~~~g-------~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 192 --IPWHPNDG-------FLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred --ccchhccc-------ceeehhhhhhccCceEEecCCccc
Confidence 33554431 357788899999999999988777
|
; GO: 0008168 methyltransferase activity |
| >KOG1197|consensus | Back alignment and domain information |
|---|
Probab=83.12 E-value=4.6 Score=38.96 Aligned_cols=46 Identities=28% Similarity=0.179 Sum_probs=31.9
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcC--CCcEEEEcCCchhh--HHhhcc
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLY--PDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~--~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
+++||+.||= .||.||..+.+.|+++ ..++++.-.+.+.. +++|-.
T Consensus 143 ~vkpGhtVlv-haAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~akenG~ 192 (336)
T KOG1197|consen 143 NVKPGHTVLV-HAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKENGA 192 (336)
T ss_pred CCCCCCEEEE-EeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhcCC
Confidence 6899999985 5667888887777653 36677776666655 555544
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=83.06 E-value=1.3 Score=42.58 Aligned_cols=42 Identities=24% Similarity=0.189 Sum_probs=30.5
Q ss_pred CeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh-HHhhcc
Q psy7769 168 DTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV-LALNIR 209 (355)
Q Consensus 168 ~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl-l~~~l~ 209 (355)
.+|||++||||.-+..+.+..+ ...++++|.|+.++ +.+.+.
T Consensus 35 ~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~ 78 (274)
T PF09243_consen 35 RSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLL 78 (274)
T ss_pred ceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHH
Confidence 4899999999965444444443 36799999999999 544443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=82.88 E-value=3.7 Score=39.72 Aligned_cols=98 Identities=16% Similarity=0.043 Sum_probs=53.0
Q ss_pred CeEeeecccCcchHHHHHH-h-cCCCcEEEEcCCchhh-HHhh-ccccccccCc-ceEEEEEecceeeecccCCCCCccC
Q psy7769 168 DTVLDMCAAPGGKTLVALQ-T-LYPDYYCMDGASLLPV-LALN-IRPYDTVLDI-HALKLVKVGGSVVYSTCSLSPIQND 242 (355)
Q Consensus 168 ~~VLD~CAgPGgKT~~la~-~-~~~g~V~AvD~s~~Rl-l~~~-l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG~t~~ 242 (355)
.+|+=+|+||=-.|+.+.. . +....|+++|+++.+. +.+. ++. . .+. ..+.+..+|+..+ +.. . ..
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~-~--~~L~~~m~f~~~d~~~~--~~d-l---~~ 192 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVAS-D--LGLSKRMSFITADVLDV--TYD-L---KE 192 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH------HH-SSEEEEES-GGGG---GG-------
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhh-c--ccccCCeEEEecchhcc--ccc-c---cc
Confidence 3999999999988876543 3 3346799999999999 4443 331 1 232 4578888887432 210 0 00
Q ss_pred CccccchHHHHhhh-----hHHHHHHHHHhhccCCcEEEEE
Q psy7769 243 GVVHMSLKRIWEET-----GCEIEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 243 ~~l~~~~~~l~~l~-----~lQ~lL~~A~~~LkpGG~lVYs 278 (355)
-++.| +..+. ..+++|.+..+.++||..|+|=
T Consensus 193 ~DvV~----lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 193 YDVVF----LAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -SEEE----E-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred CCEEE----EhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 00001 11111 2338999999999999999984
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=82.22 E-value=5.6 Score=38.91 Aligned_cols=40 Identities=10% Similarity=-0.075 Sum_probs=27.6
Q ss_pred hCCCCCCeEeeecccCcchHHH---HHHhcCCCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLV---ALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~---la~~~~~g~V~AvD~s~~Rl 203 (355)
..+++|++||=.++ |+.... +|+..+-.+|+++|.++.|+
T Consensus 172 ~~~~~g~~VlV~G~--g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~ 214 (358)
T TIGR03451 172 GGVKRGDSVAVIGC--GGVGDAAIAGAALAGASKIIAVDIDDRKL 214 (358)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCHHHH
Confidence 35789999998754 555544 44444322599999999998
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=81.64 E-value=0.65 Score=38.29 Aligned_cols=75 Identities=17% Similarity=0.148 Sum_probs=47.6
Q ss_pred CcchHHHHHHhcCCCcEEEEcCCchhh-HHhhccccccccCcceEEEEEecce-------------eeec--ccCCCCCc
Q psy7769 177 PGGKTLVALQTLYPDYYCMDGASLLPV-LALNIRPYDTVLDIHALKLVKVGGS-------------VVYS--TCSLSPIQ 240 (355)
Q Consensus 177 PGgKT~~la~~~~~g~V~AvD~s~~Rl-l~~~l~r~~~~~g~~~v~~~~~Da~-------------~lDa--PCSgsG~t 240 (355)
-|..++++|...+ .+|+++|.++.++ +.+.+- .. .++..+.. .+|. -|+|.+
T Consensus 2 vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~G-------a~--~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~-- 69 (130)
T PF00107_consen 2 VGLMAIQLAKAMG-AKVIATDRSEEKLELAKELG-------AD--HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSG-- 69 (130)
T ss_dssp HHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTT-------ES--EEEETTTSSHHHHHHHHTTTSSEEEEEESSSSH--
T ss_pred hHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhc-------cc--ccccccccccccccccccccccceEEEEecCcH--
Confidence 4677888888776 8999999999998 333322 11 11111110 1222 243333
Q ss_pred cCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 241 NDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 241 ~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
..+..+++++++||+++.....-
T Consensus 70 -------------------~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 70 -------------------DTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp -------------------HHHHHHHHHEEEEEEEEEESSTS
T ss_pred -------------------HHHHHHHHHhccCCEEEEEEccC
Confidence 56899999999999999865554
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=80.52 E-value=16 Score=35.05 Aligned_cols=115 Identities=9% Similarity=-0.080 Sum_probs=71.3
Q ss_pred HHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEE---------
Q psy7769 156 LLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVK--------- 224 (355)
Q Consensus 156 ~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~--------- 224 (355)
.-+++...+.| .+||=+|.|-||..-.+++.- .+|+.||+++.-+ .++.+-.+.-....++++++.
T Consensus 63 vHppl~~h~~p-k~VLIiGGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~ 139 (262)
T PRK00536 63 AHMGGCTKKEL-KEVLIVDGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKK 139 (262)
T ss_pred HHHHHhhCCCC-CeEEEEcCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCc
Confidence 34556666666 599999999999888887753 4999999999888 444343110001224454432
Q ss_pred ecceeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 225 VGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 225 ~Da~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
.|...+|..- ++ +-.+.+.+.|+|||.+|.=+-|... ...++..+.+..
T Consensus 140 fDVIIvDs~~-------------~~----------~fy~~~~~~L~~~Gi~v~Qs~sp~~--~~~~~~~i~~~l 188 (262)
T PRK00536 140 YDLIICLQEP-------------DI----------HKIDGLKRMLKEDGVFISVAKHPLL--EHVSMQNALKNM 188 (262)
T ss_pred CCEEEEcCCC-------------Ch----------HHHHHHHHhcCCCcEEEECCCCccc--CHHHHHHHHHHH
Confidence 2223344211 11 3467788899999999986555543 345556665544
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=80.32 E-value=5.1 Score=39.10 Aligned_cols=41 Identities=7% Similarity=-0.070 Sum_probs=28.2
Q ss_pred CCCCCCeEeeecccCcchH-HHHHHh-cCCCcEEEEcCCchhh
Q psy7769 163 NIRPYDTVLDMCAAPGGKT-LVALQT-LYPDYYCMDGASLLPV 203 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT-~~la~~-~~~g~V~AvD~s~~Rl 203 (355)
.+++|++||=.+||+=|.. .++|.. .+..+|+++|.++.|+
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~ 202 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKL 202 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHH
Confidence 3678999998876443322 344443 3335799999999988
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=80.26 E-value=1.6 Score=41.58 Aligned_cols=130 Identities=18% Similarity=0.101 Sum_probs=67.5
Q ss_pred eEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEE---EE-EecceeeecccCCCCCccC
Q psy7769 169 TVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALK---LV-KVGGSVVYSTCSLSPIQND 242 (355)
Q Consensus 169 ~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~---~~-~~Da~~lDaPCSgsG~t~~ 242 (355)
+|+|+|||.||.+..+-+.+ --.|.|+|+++... .+.|... .....+..+. +- ..|....-+||.++...+.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~~~-~~~~Di~~~~~~~l~~~~D~l~ggpPCQ~fS~ag~ 79 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANFPE-VICGDITEIDPSDLPKDVDLLIGGPPCQGFSIAGK 79 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHHTE-EEESHGGGCHHHHHHHT-SEEEEE---TTTSTTST
T ss_pred cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhcccc-cccccccccccccccccceEEEeccCCceEecccc
Confidence 79999999999998887764 23689999999988 6666630 1001111110 11 2454557789988764332
Q ss_pred CccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceE
Q psy7769 243 GVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEI 306 (355)
Q Consensus 243 ~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~ 306 (355)
+. .....+ ..+-.-+-.+++.++|--.|+=..-.+....+..+++.+++.. ++.|-.+
T Consensus 80 ~~-~~~d~r----~~L~~~~~~~v~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l-~~lGY~v 137 (335)
T PF00145_consen 80 RK-GFDDPR----NSLFFEFLRIVKELKPKYFLLENVPGLLSSKNGEVFKEILEEL-EELGYNV 137 (335)
T ss_dssp HH-CCCCHT----TSHHHHHHHHHHHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHH-HHTTEEE
T ss_pred cc-cccccc----chhhHHHHHHHhhccceEEEecccceeeccccccccccccccc-cccceee
Confidence 11 011110 1111112233345678655555566666666667777777655 2344333
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 355 | ||||
| 4fp9_A | 360 | Human Mterf4-Nsun4 Protein Complex Length = 360 | 3e-19 | ||
| 4fp9_A | 360 | Human Mterf4-Nsun4 Protein Complex Length = 360 | 7e-13 | ||
| 4fzv_A | 359 | Crystal Structure Of The Human Mterf4:nsun4:sam Ter | 3e-18 | ||
| 4fzv_A | 359 | Crystal Structure Of The Human Mterf4:nsun4:sam Ter | 4e-12 | ||
| 1ixk_A | 315 | Crystal Structure Analysis Of Methyltransferase Hom | 2e-09 | ||
| 3m6u_A | 464 | Multi-Site-Specific 16s Rrna Methyltransferase Rsmf | 1e-05 | ||
| 3m6w_A | 464 | Multi-Site-Specific 16s Rrna Methyltransferase Rsmf | 1e-05 | ||
| 3a4t_A | 274 | Crystal Structure Of Atrm4 From M.Jannaschii With S | 4e-05 | ||
| 3m6x_A | 464 | Multi-Site-Specific 16s Rrna Methyltransferase Rsmf | 4e-05 | ||
| 2yxl_A | 450 | Crystal Structure Of Ph0851 Length = 450 | 2e-04 | ||
| 3m4x_A | 456 | Structure Of A Ribosomal Methyltransferase Length = | 6e-04 | ||
| 1sqf_A | 429 | The Crystal Structure Of E. Coli Fmu Binary Complex | 7e-04 |
| >pdb|4FP9|A Chain A, Human Mterf4-Nsun4 Protein Complex Length = 360 | Back alignment and structure |
|
| >pdb|4FP9|A Chain A, Human Mterf4-Nsun4 Protein Complex Length = 360 | Back alignment and structure |
|
| >pdb|4FZV|A Chain A, Crystal Structure Of The Human Mterf4:nsun4:sam Ternary Complex Length = 359 | Back alignment and structure |
|
| >pdb|4FZV|A Chain A, Crystal Structure Of The Human Mterf4:nsun4:sam Ternary Complex Length = 359 | Back alignment and structure |
|
| >pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog Protein From Pyrococcus Horikoshii Length = 315 | Back alignment and structure |
|
| >pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group 43 Length = 464 | Back alignment and structure |
|
| >pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group P21212 In Complex With S-Adenosyl-L- Methionine Length = 464 | Back alignment and structure |
|
| >pdb|3A4T|A Chain A, Crystal Structure Of Atrm4 From M.Jannaschii With Sinefungin Length = 274 | Back alignment and structure |
|
| >pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group P21212 Length = 464 | Back alignment and structure |
|
| >pdb|2YXL|A Chain A, Crystal Structure Of Ph0851 Length = 450 | Back alignment and structure |
|
| >pdb|3M4X|A Chain A, Structure Of A Ribosomal Methyltransferase Length = 456 | Back alignment and structure |
|
| >pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With S- Adenosylmethionine At 2.1 A Resolution Length = 429 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A Length = 274 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 4e-19
Identities = 39/170 (22%), Positives = 58/170 (34%), Gaps = 71/170 (41%)
Query: 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKT------------LVALQTLYPDYY-- 193
Y +S++P + LN R D +LDMCAAPGGKT +VA+ +
Sbjct: 65 YMPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAV-----EISKT 119
Query: 194 --------------------CMDGASLLPVLALNIRPYDTVL------------------ 215
D L N +D +L
Sbjct: 120 RTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVS 179
Query: 216 --DI------------HALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 251
DI + L+K G +VYSTCS+ +N+ V+ L++
Sbjct: 180 EEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQK 229
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A Length = 274 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 3e-07
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 262 IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
I + L+K G +VYSTCS+ +N+ V+ L++
Sbjct: 194 IDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQK 229
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* Length = 464 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 6e-17
Identities = 46/179 (25%), Positives = 73/179 (40%), Gaps = 43/179 (24%)
Query: 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKT--LVALQTLYPDYYCMDGASLL---- 201
YY + ++ + L+ +P + VLD+ AAPGGKT L A M G LL
Sbjct: 83 YYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAAR---------MGGKGLLLANE 133
Query: 202 ------PVLALNIRPY---DTVLDIHALKLVKVGGS-----VVYSTCSLSPIQNDGVVH- 246
L N+ + V L + G+ ++ + CS +G+
Sbjct: 134 VDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDAPCS-----GEGMFRK 188
Query: 247 -MSLKRIWEETGCEI------EI-KHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
R W + + + A +L+ GG +VYSTC+ +P +N+GVV LK
Sbjct: 189 DREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFLKA 247
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A Length = 429 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 1e-14
Identities = 32/168 (19%), Positives = 53/168 (31%), Gaps = 75/168 (44%)
Query: 152 DGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV-------- 203
D ++ + L + + +LD+CAAPGGKT L+ A ++ V
Sbjct: 232 DASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILE-------VAPEAQVVAVDIDEQRLS 284
Query: 204 --------LALNIR----------------PYDTVL---------------DI------- 217
L + +D +L DI
Sbjct: 285 RVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDR 344
Query: 218 --------------HALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 251
+K GG++VY+TCS+ P +N + L+R
Sbjct: 345 DIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQR 392
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} Length = 450 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 1e-13
Identities = 31/165 (18%), Positives = 53/165 (32%), Gaps = 67/165 (40%)
Query: 152 DGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYP-------DYY----------- 193
+ AS + + L+ +P +TV+D+ AAPGGKT + + D
Sbjct: 245 EEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFV 304
Query: 194 -----------CMDGASLLPVLALNIRPYDTVL------------------------DIH 218
D ++ D VL I+
Sbjct: 305 KRMGIKIVKPLVKDARKAPEIIGE--EVADKVLLDAPCTSSGTIGKNPELRWRLREDKIN 362
Query: 219 AL------------KLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 251
+ +LVK GG ++Y+TCS+ +N+ + L
Sbjct: 363 EMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNV 407
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} Length = 450 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 4e-05
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 262 IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
++ A +LVK GG ++Y+TCS+ +N+ + L
Sbjct: 372 LESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNV 407
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 Length = 315 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 7e-11
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTL 182
Y + +S+ P +AL+ +P + V DM AAPGGKT
Sbjct: 100 IYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTS 134
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 Length = 315 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 3e-07
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 262 IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
++ L+++K GG +VYSTCSL P +N+ V+ +L
Sbjct: 229 LEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDN 264
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 Length = 315 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 1e-06
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 218 HALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 251
L+++K GG +VYSTCSL P +N+ V+ +L
Sbjct: 231 KGLEVLKPGGILVYSTCSLEPEENEFVIQWALDN 264
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} Length = 456 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 8e-11
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKT 181
Y + ++++ A +P + VLD+CAAPGGK+
Sbjct: 87 EYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKS 120
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} Length = 456 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 5e-07
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 262 IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSL 321
+ A+K++K G ++YSTC+ +P +N+ ++ + E IE L+Q++ +S
Sbjct: 217 LSSAIKMLKNKGQLIYSTCTFAPEENEEIIS----WLVENYPVTIEEIPLTQSVSSGRSE 272
Query: 322 FSFA 325
+
Sbjct: 273 WGSV 276
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} Length = 456 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 5e-06
Identities = 10/34 (29%), Positives = 23/34 (67%)
Query: 218 HALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 251
A+K++K G ++YSTC+ +P +N+ ++ ++
Sbjct: 219 SAIKMLKNKGQLIYSTCTFAPEENEEIISWLVEN 252
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 Length = 309 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 3e-10
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 119 SPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPG 178
P L F D+ E P + G D AS LP + L+ P V+D CAAPG
Sbjct: 61 MPELLVFP-AQTDLHEHPLYRAGH-----LILQDRASCLPAMLLDPPPGSHVIDACAAPG 114
Query: 179 GKTL 182
KT
Sbjct: 115 NKTS 118
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 Length = 309 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 4e-06
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 262 IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
+ HAL +VYSTCSL +N+ VV +L++
Sbjct: 218 LCHALTFPS-LQRLVYSTCSLCQEENEDVVRDALQQ 252
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 Length = 309 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 218 HALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 251
HAL +VYSTCSL +N+ VV +L++
Sbjct: 220 HALTFPS-LQRLVYSTCSLCQEENEDVVRDALQQ 252
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} Length = 479 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 3e-09
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 148 YYCMDGASLLPVLAL--NIRPYDTVLDMCAAPGGKT 181
+Y + +S+LPV AL + V+D+ AAPG KT
Sbjct: 97 FYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKT 132
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} Length = 479 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 262 IKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
I A ++ GG++VYSTC+L+ +N+ V +
Sbjct: 229 IDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKET 264
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} Length = 479 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 4e-06
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 218 HALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 251
A ++ GG++VYSTC+L+ +N+ V +
Sbjct: 231 SAFHALRPGGTLVYSTCTLNQEENEAVCLWLKET 264
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 5e-05
Identities = 27/111 (24%), Positives = 37/111 (33%), Gaps = 26/111 (23%)
Query: 42 RHLYSNQSLE--ASIETAELD------KDRLVAPHDTASTGLHDFIPATQLKGMEGFITD 93
HL + + E LD K R + AS + + + QLK + +I D
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL--QQLKFYKPYICD 536
Query: 94 ADYMDYYRPSPE------VDFKVVPETELHISPY---LQ-AFSFPSGDISE 134
D P E +DF E L S Y L+ A I E
Sbjct: 537 ND------PKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 355 | |||
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 100.0 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 100.0 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 100.0 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 100.0 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 100.0 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 100.0 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 100.0 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 100.0 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 100.0 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.52 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.48 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.35 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.33 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.33 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.32 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.3 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.29 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.27 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.27 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.19 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.19 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.19 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.17 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.16 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.15 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.13 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.13 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.13 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.1 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.1 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.1 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.09 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.06 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.04 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.02 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.01 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.01 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.0 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.0 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 98.99 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.99 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 98.98 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 98.97 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 98.97 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 98.97 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.94 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 98.93 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 98.93 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 98.93 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 98.93 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.92 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 98.92 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 98.92 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 98.92 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 98.91 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.91 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.91 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 98.9 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 98.9 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.89 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 98.89 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 98.88 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 98.88 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 98.88 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 98.87 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 98.87 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 98.86 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.86 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 98.85 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 98.85 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.84 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.84 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 98.84 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 98.83 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.83 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 98.82 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.82 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.81 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.81 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 98.8 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.79 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.79 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 98.78 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 98.77 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.76 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.76 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 98.76 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.76 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 98.76 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.75 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 98.75 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.75 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 98.75 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 98.75 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.75 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 98.75 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 98.74 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 98.73 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 98.73 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 98.73 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 98.73 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 98.73 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.73 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 98.73 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 98.72 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 98.72 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.72 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.71 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.71 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 98.71 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 98.71 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 98.71 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 98.7 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 98.7 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 98.68 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.68 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 98.68 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 98.67 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 98.67 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.67 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 98.66 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.66 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 98.66 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.66 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 98.65 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 98.65 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 98.64 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.64 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 98.63 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 98.63 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 98.63 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 98.62 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 98.62 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.62 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 98.62 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.62 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 98.61 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.61 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.61 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 98.6 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 98.6 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 98.6 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 98.59 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 98.59 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 98.59 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 98.59 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 98.59 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.58 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 98.57 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 98.56 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 98.56 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 98.56 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 98.56 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 98.55 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 98.55 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 98.55 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.55 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 98.55 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 98.55 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 98.55 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 98.55 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 98.55 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 98.54 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 98.54 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.54 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 98.54 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.53 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 98.53 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 98.53 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 98.53 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 98.52 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 98.52 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 98.52 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 98.51 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.51 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 98.49 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.47 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 98.47 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 98.46 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 98.46 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 98.44 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 98.43 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 98.43 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.42 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 98.42 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.41 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.4 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.38 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 98.38 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.36 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 98.36 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.35 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.34 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 98.34 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 98.33 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 98.33 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.33 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 98.32 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.32 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 98.31 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 98.3 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 98.3 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 98.29 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.28 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.28 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 98.28 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.26 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 98.26 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 98.26 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 98.26 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 98.26 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.26 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.25 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.24 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 98.24 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.24 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.23 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 98.23 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.22 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.22 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 98.22 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 98.21 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.21 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 98.21 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.21 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.2 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 98.16 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 98.16 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.13 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.13 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.13 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 98.13 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.12 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.1 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.09 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.09 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.09 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.05 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.03 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.03 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.03 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.03 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.02 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.01 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.0 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.0 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 97.98 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 97.98 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 97.97 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.96 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 97.95 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 97.94 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 97.92 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 97.91 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 97.91 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 97.9 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 97.88 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 97.84 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 97.82 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 97.79 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 97.78 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.77 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 97.76 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 97.73 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 97.7 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.69 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 97.66 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.66 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 97.63 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.63 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.62 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.59 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.58 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.52 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 97.49 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.49 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.4 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.3 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 97.23 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 97.14 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.14 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 97.14 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.04 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 96.98 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 96.89 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 96.7 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 96.69 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 96.55 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 96.33 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 95.86 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 95.79 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 95.64 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 95.37 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 95.15 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 95.15 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 95.05 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 94.79 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 94.72 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 94.51 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 94.5 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 94.5 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.12 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 94.05 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 93.78 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 93.51 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 93.43 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 93.17 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 93.03 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 92.7 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 92.4 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 92.39 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 92.34 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 92.21 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 92.19 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 92.18 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 92.05 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 91.84 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 91.5 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 91.12 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 91.05 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 91.04 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 90.78 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 90.71 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 90.63 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 90.58 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 88.49 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 87.68 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 87.64 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 87.16 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 86.19 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 86.03 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 85.71 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 85.67 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 85.42 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 85.11 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 84.69 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 84.25 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 84.17 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 84.0 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 83.4 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 83.07 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 81.9 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 81.76 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 81.58 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 81.46 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 81.22 |
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-53 Score=417.18 Aligned_cols=238 Identities=37% Similarity=0.578 Sum_probs=201.5
Q ss_pred CCCCccceeEecCCCCcccCCCCCCCCcceeeEEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEE
Q psy7769 116 LHISPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCM 195 (355)
Q Consensus 116 ~~~p~~l~~~~~~~~~~~~~p~~~~g~~~~~~~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~A 195 (355)
+.+++.+.++.+++|++.++|+++.|..+++.||+||++||+++.+|+|+||++||||||||||||+|||++++.+.|+|
T Consensus 98 ~~~~~~l~~~~~~~g~~~~~p~~~~g~~~vqd~~iQd~aS~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A 177 (359)
T 4fzv_A 98 WACSPNLRCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAA 177 (359)
T ss_dssp HHSCSSCCEEECCTTCCCCCCCCCBCTTSSBSEEEECGGGHHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEE
T ss_pred ccCCccceEEecCCCChhcCCCcccCceeccchhhhCHHHHHHHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEE
Confidence 55778899999999999999999999999999999999999999999999999999999999999999999887789999
Q ss_pred EcCCchhh--HHhhcccccc--ccCcceEEEEEecce-------------eeecccCCCCC-ccCCc--cc--cchHHHH
Q psy7769 196 DGASLLPV--LALNIRPYDT--VLDIHALKLVKVGGS-------------VVYSTCSLSPI-QNDGV--VH--MSLKRIW 253 (355)
Q Consensus 196 vD~s~~Rl--l~~~l~r~~~--~~g~~~v~~~~~Da~-------------~lDaPCSgsG~-t~~~~--l~--~~~~~l~ 253 (355)
+|+++.|+ +++|++|+.. +....++.++..|+. +|||||||+|+ +.+++ +. |++..+.
T Consensus 178 ~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~ 257 (359)
T 4fzv_A 178 NDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQ 257 (359)
T ss_dssp ECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHH
T ss_pred EcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHH
Confidence 99999999 8999984320 011246788777653 39999999852 33444 33 6788899
Q ss_pred hhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceEEEecccccccccccccccccCCCccE
Q psy7769 254 EETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYG 332 (355)
Q Consensus 254 ~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g 332 (355)
.+..+| +||.+|+++|||||+|||||||++++|||+||++||+++++...+.+.+.++......+.+.+.|.+.. ++|
T Consensus 258 ~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g 336 (359)
T 4fzv_A 258 ILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELLANQYSIQVQVEDLTHFRRVFMDTFCFFSSC-QVG 336 (359)
T ss_dssp THHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTTHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHTTTCEECTTC-SSS
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhCHHHHHHHHHhCCCCcccccccccccccccccccccccCccc-cce
Confidence 999999 999999999999999999999999999999999999998766667777777655443344444555554 789
Q ss_pred EEEecCCCCCCCceEEEEEEEc
Q psy7769 333 HLVQPHLPSNFGPMYFCKFDKI 354 (355)
Q Consensus 333 ~~~~P~~~~~~~gfFia~l~r~ 354 (355)
.+++||.+.++||||+|+|+|.
T Consensus 337 ~r~~P~~~~~~gGFFiA~L~Kv 358 (359)
T 4fzv_A 337 ELVIPNLMANFGPMYFCKMRRL 358 (359)
T ss_dssp EEEECBTTBCCCCEEEEEEEEC
T ss_pred EEECCCCCCCCCCEEEEEEEEC
Confidence 9999999888999999999996
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-43 Score=338.81 Aligned_cols=259 Identities=22% Similarity=0.237 Sum_probs=186.4
Q ss_pred CCCCCcceecccCCCChhhhhhh---ccccccCCCCCc--ceee-CCC---cCCCCCccceeEecCCCCcccCCCCCCCC
Q psy7769 72 STGLHDFIPATQLKGMEGFITDA---DYMDYYRPSPEV--DFKV-VPE---TELHISPYLQAFSFPSGDISEFPSPKRGV 142 (355)
Q Consensus 72 ~~~l~~~~rvn~lk~~~~~i~e~---~~~~~~~~~~~~--~~~v-~~~---~~~~~p~~l~~~~~~~~~~~~~p~~~~g~ 142 (355)
...+|.|+|||++|...+.+.+. +.+.... .+.. .++. ... -..++|..+.+ ....++..+|.++.|.
T Consensus 7 ~~~~p~~lRvN~lk~~~~~~~~~L~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~~l~~--~~~~~~~~~~~~~~G~ 83 (309)
T 2b9e_A 7 ASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQG-RASSLDDLRALKGKHFLLDPLMPELLVF--PAQTDLHEHPLYRAGH 83 (309)
T ss_dssp --CCCEEEEECTTTCCHHHHHHHHHHTTCEEEE-ECSSHHHHHTCCTTEEEECSSSTTEEEE--CTTCCCTTSHHHHTTS
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHhCCCeeee-ccccccccccccccccccccCCCceEEe--CCCCCcccChHHHCCe
Confidence 35588999999999998866543 2332110 0000 0000 000 02346766655 2335788889999887
Q ss_pred cceeeEEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhccccccccCcce
Q psy7769 143 TGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRPYDTVLDIHA 219 (355)
Q Consensus 143 ~~~~~~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~ 219 (355)
||+||++|++++.+|++++|++|||+|||||+||+++|+.+ +.++|+|+|+++.|+ +++|+++ .|..+
T Consensus 84 -----~~~Qd~~s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r----~g~~~ 154 (309)
T 2b9e_A 84 -----LILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLAR----AGVSC 154 (309)
T ss_dssp -----EEECCTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH----TTCCS
T ss_pred -----EEEECHHHHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH----cCCCe
Confidence 99999999999999999999999999999999999999986 458999999999999 9999984 45567
Q ss_pred EEEEEecc---------------eeeecccCCCCCccCCc--cc----cchHHHHhhhhHH-HHHHHHHhhccCCcEEEE
Q psy7769 220 LKLVKVGG---------------SVVYSTCSLSPIQNDGV--VH----MSLKRIWEETGCE-IEIKHALKLVKVGGSVVY 277 (355)
Q Consensus 220 v~~~~~Da---------------~~lDaPCSgsG~t~~~~--l~----~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVY 277 (355)
+.++..|+ ..+||||||+| +.+++ ++ |+++++..+..+| +||++|+++++ ||+|||
T Consensus 155 v~~~~~D~~~~~~~~~~~~~fD~Vl~D~PcSg~G-~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvY 232 (309)
T 2b9e_A 155 CELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSG-MPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVY 232 (309)
T ss_dssp EEEEECCGGGSCTTCGGGTTEEEEEECCCCCC-------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEE
T ss_pred EEEEeCChHhcCccccccCCCCEEEEcCCcCCCC-CCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEE
Confidence 77776553 34999999999 55553 43 4677889999999 99999999997 999999
Q ss_pred EeCCCCCCCCHHHHHHHHHhhhhccCceEEEeccccccc--ccccccccccCCCccEEEEecCCCCCCCceEEEEEEEc
Q psy7769 278 STCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALR--PLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFDKI 354 (355)
Q Consensus 278 sTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~g~~~~P~~~~~~~gfFia~l~r~ 354 (355)
||||++++|||+||++||++++ + .++++++.+.++ +.. .+ +. ...+.+++||.+ ++||||+|+|+|.
T Consensus 233 sTCs~~~~Ene~~v~~~l~~~~---~-~~~~~~~~~~~~~~~~~---~~-~~-~~~~~r~~P~~~-~~dGfF~A~l~k~ 301 (309)
T 2b9e_A 233 STCSLCQEENEDVVRDALQQNP---G-AFRLAPALPAWPHRGLS---TF-PG-AEHCLRASPETT-LSSGFFVAVIERV 301 (309)
T ss_dssp EESCCCGGGTHHHHHHHHTTST---T-TEEECCCCTTCCCBCCS---SS-TT-GGGSEEECHHHH-SSCSEEEEEEEEC
T ss_pred ECCCCChHHhHHHHHHHHHhCC---C-cEEEecccccccccccc---cc-CC-CCCeEEECCCCC-CCCCeEEEEEEEC
Confidence 9999999999999999998763 2 255565533221 111 11 11 246789999987 7899999999986
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-42 Score=346.79 Aligned_cols=218 Identities=17% Similarity=0.187 Sum_probs=173.8
Q ss_pred cCCCCCccceeEecCCCCcccCCCCCCCCcceeeEEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCc
Q psy7769 114 TELHISPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDY 192 (355)
Q Consensus 114 ~~~~~p~~l~~~~~~~~~~~~~p~~~~g~~~~~~~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~ 192 (355)
+.++.|..+. . ..+...|.+..|. ||+||++|++++.+|++++|++|||+|||||+||+++|+.++ .|.
T Consensus 63 ~~~~~~~~~~---~--~~~~~~~~~~~G~-----~~vQd~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~ 132 (456)
T 3m4x_A 63 PAPYSNEGFL---G--TVNGKSFLHQAGY-----EYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGL 132 (456)
T ss_dssp BCTTCTTEEE---S--CCCTTSHHHHTTS-----CEECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSE
T ss_pred CCCCCcceEE---c--CCCCCChHHhCCc-----EEEECHHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCE
Confidence 4456676544 1 2356778888887 999999999999999999999999999999999999998764 489
Q ss_pred EEEEcCCchhh--HHhhccccccccCcceEEEEEecc-------------eeeecccCCCCCccCCc--c--ccchHHHH
Q psy7769 193 YCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG-------------SVVYSTCSLSPIQNDGV--V--HMSLKRIW 253 (355)
Q Consensus 193 V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da-------------~~lDaPCSgsG~t~~~~--l--~~~~~~l~ 253 (355)
|+|+|+++.|+ +++|+++ .|..++.+++.|+ ..+|+||||+| +.+++ + .|+++.+.
T Consensus 133 V~AvDis~~rl~~~~~n~~r----~g~~nv~v~~~Da~~l~~~~~~~FD~Il~DaPCSg~G-~~rr~p~~~~~~~~~~~~ 207 (456)
T 3m4x_A 133 LVTNEIFPKRAKILSENIER----WGVSNAIVTNHAPAELVPHFSGFFDRIVVDAPCSGEG-MFRKDPNAIKEWTEESPL 207 (456)
T ss_dssp EEEECSSHHHHHHHHHHHHH----HTCSSEEEECCCHHHHHHHHTTCEEEEEEECCCCCGG-GTTTCHHHHHHCCTTHHH
T ss_pred EEEEeCCHHHHHHHHHHHHH----cCCCceEEEeCCHHHhhhhccccCCEEEECCCCCCcc-ccccCHHHhhhcCHHHHH
Confidence 99999999999 9999984 4666788876654 34999999999 55665 3 38889999
Q ss_pred hhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceEEEecccccccccccc-ccccc-CCCc
Q psy7769 254 EETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSL-FSFAN-INLS 330 (355)
Q Consensus 254 ~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~-~~~~ 330 (355)
.+..+| ++|.+|+++|||||+|||||||++++|||+||+++|+++ + ++++++.... ++... ..+.. ....
T Consensus 208 ~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~~----~--~~l~~~~~~~-~~~~~~~~~~~~~~~~ 280 (456)
T 3m4x_A 208 YCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVENY----P--VTIEEIPLTQ-SVSSGRSEWGSVAGLE 280 (456)
T ss_dssp HHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHHS----S--EEEECCCCSS-CCEECCGGGSSSTTGG
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHHhC----C--CEEEeccccc-cccccccccccccccC
Confidence 999999 999999999999999999999999999999999999975 3 5555553211 11000 01110 0124
Q ss_pred cEEEEecCCCCCCCceEEEEEEEc
Q psy7769 331 YGHLVQPHLPSNFGPMYFCKFDKI 354 (355)
Q Consensus 331 ~g~~~~P~~~~~~~gfFia~l~r~ 354 (355)
.+.+++||.+ +++|||+|+|+|.
T Consensus 281 ~~~r~~P~~~-~~dGFF~A~l~k~ 303 (456)
T 3m4x_A 281 KTIRIWPHKD-QGEGHFVAKLTFH 303 (456)
T ss_dssp GSEEECTTTS-SSSCEEEEEEEEC
T ss_pred CeEEECCCCC-CCcCeEEEEEEEC
Confidence 5789999997 6799999999985
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=343.67 Aligned_cols=247 Identities=19% Similarity=0.180 Sum_probs=191.1
Q ss_pred CCcceecccCCCChhhhhhhccccccCCCCCcceeeCCCcCCCCCccceeEecCCCCcccCCCCCCCCcceeeEEEechh
Q psy7769 75 LHDFIPATQLKGMEGFITDADYMDYYRPSPEVDFKVVPETELHISPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGA 154 (355)
Q Consensus 75 l~~~~rvn~lk~~~~~i~e~~~~~~~~~~~~~~~~v~~~~~~~~p~~l~~~~~~~~~~~~~p~~~~g~~~~~~~~~QD~a 154 (355)
.+.++|||++|...+.+.+.-. + ..++.++.|..+.+. ....+...|.+..|. +|+||++
T Consensus 30 ~~~~lRvN~lk~~~~~~~~~l~---------~----~~~~~~~~~~g~~l~--~~~~~~~~~~~~~G~-----~~vQd~s 89 (464)
T 3m6w_A 30 RTYGLRVNTLKLPPEAFQRISP---------W----PLRPIPWCQEGFYYP--EEARPGPHPFFYAGL-----YYIQEPS 89 (464)
T ss_dssp CCCEEEECTTTCCHHHHHHHCS---------S----CCEEETTEEEEEECC--TTCCCSSSHHHHTTS-----EEECCTT
T ss_pred CCeEEEEcCCCCCHHHHHHHcC---------C----CceecCCCCceEEEC--CCCCcccChHHhCCe-----EEEECHH
Confidence 5679999999999887766321 1 123445667665542 233567788888887 9999999
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc----
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG---- 227 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da---- 227 (355)
|++++.+|++++|++|||+|||||+||+++|+.++ .|.|+|+|+++.|+ +++|+++ .|.. +.+++.|+
T Consensus 90 s~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r----~G~~-v~~~~~Da~~l~ 164 (464)
T 3m6w_A 90 AQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVER----WGAP-LAVTQAPPRALA 164 (464)
T ss_dssp THHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH----HCCC-CEEECSCHHHHH
T ss_pred HHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH----cCCe-EEEEECCHHHhh
Confidence 99999999999999999999999999999999875 48999999999999 8999984 3555 66666553
Q ss_pred ---------eeeecccCCCCCccCCc--c--ccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHH
Q psy7769 228 ---------SVVYSTCSLSPIQNDGV--V--HMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHM 293 (355)
Q Consensus 228 ---------~~lDaPCSgsG~t~~~~--l--~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~ 293 (355)
..+||||||+|+ .+++ + .|+++.+..+..+| ++|++|+++|||||+|||||||++++|||+||++
T Consensus 165 ~~~~~~FD~Il~D~PcSg~G~-~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~ 243 (464)
T 3m6w_A 165 EAFGTYFHRVLLDAPCSGEGM-FRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAH 243 (464)
T ss_dssp HHHCSCEEEEEEECCCCCGGG-TTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHH
T ss_pred hhccccCCEEEECCCcCCccc-cccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHH
Confidence 449999999994 4444 3 47889999999999 9999999999999999999999999999999999
Q ss_pred HHHhhhhccCceEEEeccccc--c-cccccccccccCCCccEEEEecCCCCCCCceEEEEEEEc
Q psy7769 294 SLKRIWEETGCEIEIKDLSQA--L-RPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFDKI 354 (355)
Q Consensus 294 ~L~~~~~~~~~~~~~~~l~~~--~-~~~~~~~~~~~~~~~~g~~~~P~~~~~~~gfFia~l~r~ 354 (355)
||+++ .+ ++++++... . ++... +.-.......+.+++||.+ +++|||+|+|+|.
T Consensus 244 ~l~~~---~~--~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~P~~~-~~dGfF~A~l~k~ 300 (464)
T 3m6w_A 244 FLKAH---PE--FRLEDARLHPLFAPGVPE-WGEGNPELLKTARLWPHRL-EGEGHFLARFRKE 300 (464)
T ss_dssp HHHHC---TT--EEEECCCCSTTSEECCGG-GTTTCGGGGGSEEECTTTS-SSSCEEEEEEEEC
T ss_pred HHHHC---CC--cEEEecccccccccCccc-ccccccccCCeEEECCCCC-CceeEEEEEEEEC
Confidence 99976 23 455554321 1 11100 0000011245789999997 6799999999996
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-40 Score=319.08 Aligned_cols=252 Identities=21% Similarity=0.265 Sum_probs=191.8
Q ss_pred CCCCcceecccCCCChhhhhhh-ccccccCCCCCcceeeCCCcCCCCCccceeEecCCCCcccCCCCCCCCcceeeEEEe
Q psy7769 73 TGLHDFIPATQLKGMEGFITDA-DYMDYYRPSPEVDFKVVPETELHISPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCM 151 (355)
Q Consensus 73 ~~l~~~~rvn~lk~~~~~i~e~-~~~~~~~~~~~~~~~v~~~~~~~~p~~l~~~~~~~~~~~~~p~~~~g~~~~~~~~~Q 151 (355)
..+|.++|||++|...+.+.+. +. ..+.+ ++.+++|..+.+.. ...++..+|.+..|. +++|
T Consensus 41 ~~~p~~~RvN~~k~~~~~~~~~L~~-------~g~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~G~-----~~~q 103 (315)
T 1ixk_A 41 KPLPRCFRVNTLKISVQDLVKRLNK-------KGFQF----KRVPWAKEGFCLTR-EPFSITSTPEFLTGL-----IYIQ 103 (315)
T ss_dssp SCCCCEEEECTTTSCHHHHHHHHHH-------TTCEE----EEETTEEEEEEEEE-CSSCGGGSHHHHTTS-----EEEC
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHh-------CCCee----eECCCCCceEEEeC-CCCCcccChhHhcce-----EEEe
Confidence 4478899999999988876653 10 01111 12344666665532 224677888888887 9999
Q ss_pred chhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc-
Q psy7769 152 DGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG- 227 (355)
Q Consensus 152 D~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da- 227 (355)
|.+|++++.+|++++|++|||+|||||++|+++++.++ .++|+|+|+++.|+ +++|+++ .+..++.+++.|+
T Consensus 104 d~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~----~g~~~v~~~~~D~~ 179 (315)
T 1ixk_A 104 EASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSR----LGVLNVILFHSSSL 179 (315)
T ss_dssp CHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH----HTCCSEEEESSCGG
T ss_pred CHHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHH----hCCCeEEEEECChh
Confidence 99999999999999999999999999999999999874 48999999999999 8888883 3555677776654
Q ss_pred -----------eeeecccCCCCCccCCc--c--ccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHH
Q psy7769 228 -----------SVVYSTCSLSPIQNDGV--V--HMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVV 291 (355)
Q Consensus 228 -----------~~lDaPCSgsG~t~~~~--l--~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV 291 (355)
..+|+||||+|+ .+++ + +|+++++..+..+| ++|++++++|||||+|||||||++++|||.||
T Consensus 180 ~~~~~~~~fD~Il~d~Pcsg~g~-~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v 258 (315)
T 1ixk_A 180 HIGELNVEFDKILLDAPCTGSGT-IHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVI 258 (315)
T ss_dssp GGGGGCCCEEEEEEECCTTSTTT-CC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHH
T ss_pred hcccccccCCEEEEeCCCCCccc-ccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHH
Confidence 339999999994 4443 3 37888999999999 99999999999999999999999999999999
Q ss_pred HHHHHhhhhccCceEEEeccccccccccc--ccccccCCCccEEEEecCCCCCCCceEEEEEEEc
Q psy7769 292 HMSLKRIWEETGCEIEIKDLSQALRPLKS--LFSFANINLSYGHLVQPHLPSNFGPMYFCKFDKI 354 (355)
Q Consensus 292 ~~~L~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~g~~~~P~~~~~~~gfFia~l~r~ 354 (355)
+++|+++ + ++++++....+++.. ...+.+. ...+.+++||.+ ++||||+|+|+|.
T Consensus 259 ~~~l~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~r~~P~~~-~~dGfF~A~l~k~ 315 (315)
T 1ixk_A 259 QWALDNF----D--VELLPLKYGEPALTNPFGIELSEE-IKNARRLYPDVH-ETSGFFIAKIRKL 315 (315)
T ss_dssp HHHHHHS----S--EEEECCCSSEECCSSGGGCCCCGG-GGGSEEECTTTS-SSCSEEEEEEEEC
T ss_pred HHHHhcC----C--CEEecCCccccCcccccccccccc-cCCEEEECCCCC-CcccEEEEEEEEC
Confidence 9999863 4 555565432222211 0012222 246789999997 7899999999985
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-40 Score=333.09 Aligned_cols=250 Identities=20% Similarity=0.178 Sum_probs=188.9
Q ss_pred CCCcceecccCCCChhhhhhh-ccccccCCCCCcceeeCCCcCCCCCccceeEecC--CCCcccCCCCCCCCcceeeEEE
Q psy7769 74 GLHDFIPATQLKGMEGFITDA-DYMDYYRPSPEVDFKVVPETELHISPYLQAFSFP--SGDISEFPSPKRGVTGVFNYYC 150 (355)
Q Consensus 74 ~l~~~~rvn~lk~~~~~i~e~-~~~~~~~~~~~~~~~v~~~~~~~~p~~l~~~~~~--~~~~~~~p~~~~g~~~~~~~~~ 150 (355)
.+|.++|||++|...+.+.+. +..+. ..++.+++|+.+.+.... ...+...|.++.|. +|+
T Consensus 36 ~~p~~lRvN~lk~~~~~~~~~L~~~g~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-----~~~ 99 (479)
T 2frx_A 36 PLRRSIRVNTLKISVADFLQLTAPYGW-----------TLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGL-----FYI 99 (479)
T ss_dssp CCCCCEEECTTTCCHHHHHHHHGGGCC-----------CCCEETTEEEEEC---------CGGGSHHHHTTS-----EEE
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHcCC-----------ceeecCCCCceEEEecCcccccCcccChHHhCcE-----EEE
Confidence 378899999999998876653 11110 112334556555442110 11566778888887 999
Q ss_pred echhcHHHHHhhCCC--CCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEe
Q psy7769 151 MDGASLLPVLALNIR--PYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKV 225 (355)
Q Consensus 151 QD~aS~l~~~~L~~~--pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~ 225 (355)
||++|++++.+|+++ +|++|||+|||||+||+++|+.++ .|.|+|+|+++.|+ +++|+++ .|..++.+++.
T Consensus 100 Qd~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r----~g~~nv~~~~~ 175 (479)
T 2frx_A 100 QEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISR----CGISNVALTHF 175 (479)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHH----HTCCSEEEECC
T ss_pred ECHHHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH----cCCCcEEEEeC
Confidence 999999999999999 999999999999999999999874 58999999999999 9999984 45667888776
Q ss_pred cc-------------eeeecccCCCCCccCCc--c--ccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCC
Q psy7769 226 GG-------------SVVYSTCSLSPIQNDGV--V--HMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQN 287 (355)
Q Consensus 226 Da-------------~~lDaPCSgsG~t~~~~--l--~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~EN 287 (355)
|+ ..+||||||+| +.+++ + +|+++++..+..+| ++|.+|+++|||||+|||||||++++||
T Consensus 176 D~~~~~~~~~~~fD~Il~D~PcSg~G-~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~~En 254 (479)
T 2frx_A 176 DGRVFGAAVPEMFDAILLDAPCSGEG-VVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEEN 254 (479)
T ss_dssp CSTTHHHHSTTCEEEEEEECCCCCGG-GGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSSTTT
T ss_pred CHHHhhhhccccCCEEEECCCcCCcc-cccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCcccC
Confidence 65 33999999999 44443 3 48899999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhccCceEEEecccccccccccccccccCCCccEEEEecCCCCCCCceEEEEEEEc
Q psy7769 288 DGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFDKI 354 (355)
Q Consensus 288 E~vV~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~P~~~~~~~gfFia~l~r~ 354 (355)
|+||+++|++++ + .+++.++...+++.... . ....+.+++||.+ +++|||+|+|+|.
T Consensus 255 e~vv~~~l~~~~---~-~~~~~~~~~~~~~~~~~--~---~~~g~~r~~P~~~-~~dGfF~A~l~k~ 311 (479)
T 2frx_A 255 EAVCLWLKETYP---D-AVEFLPLGDLFPGANKA--L---TEEGFLHVFPQIY-DCEGFFVARLRKT 311 (479)
T ss_dssp HHHHHHHHHHST---T-TEEECCCTTSSTTGGGG--B---CTTSCEEECTTTT-TSCCEEEEEEEEC
T ss_pred HHHHHHHHHHCC---C-ceecccccccccccccc--c---ccCCeEEECCCCC-CcCccEEEEEEEc
Confidence 999999999763 2 23444443222221110 0 1123478999997 6789999999985
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-38 Score=295.75 Aligned_cols=246 Identities=22% Similarity=0.237 Sum_probs=180.6
Q ss_pred CCCcceecccCCCChhhhhhhccccccCCCCCcceeeCCCcCCCCCccceeEecCCCCcccCCCCCCCCcceeeEEEech
Q psy7769 74 GLHDFIPATQLKGMEGFITDADYMDYYRPSPEVDFKVVPETELHISPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMDG 153 (355)
Q Consensus 74 ~l~~~~rvn~lk~~~~~i~e~~~~~~~~~~~~~~~~v~~~~~~~~p~~l~~~~~~~~~~~~~p~~~~g~~~~~~~~~QD~ 153 (355)
.+|.|+|+|++|..++.+.+. +. ... +.+++ .++|+.+.+. ....++...|.+..|. |++||.
T Consensus 8 ~~~~~~rvn~~~~~~~~~~~~-----l~-~~g--~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~G~-----~~~qd~ 70 (274)
T 3ajd_A 8 EKMQFIRVNTLKINPEVLKKR-----LE-NKG--VVLEK---TFLDYAFEVK-KSPFSIGSTPEYLFGY-----YMPQSI 70 (274)
T ss_dssp -CCEEEEECTTTCCHHHHHHH-----HH-TTT--CEEEE---CSSTTEEEEE-ECSSCTTSSHHHHTTS-----EEECCS
T ss_pred CCCeEEEEeCCCCCHHHHHHH-----HH-HCC--CeecC---CCCCceEEEe-cCCCCcccChhhhCCe-----EEEeCH
Confidence 378999999999998876653 10 011 22222 4567776652 2234667788888886 999999
Q ss_pred hcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCC-CcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc---
Q psy7769 154 ASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYP-DYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG--- 227 (355)
Q Consensus 154 aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~-g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da--- 227 (355)
+|++++.++++++|++|||+|||||++|.++++.+.+ ++|+|+|+++.++ +++|+++ .+..++.+++.|+
T Consensus 71 ~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~----~g~~~v~~~~~D~~~~ 146 (274)
T 3ajd_A 71 SSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINR----MGVLNTIIINADMRKY 146 (274)
T ss_dssp GGGHHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHH----TTCCSEEEEESCHHHH
T ss_pred HHHHHHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHH----hCCCcEEEEeCChHhc
Confidence 9999999999999999999999999999999998754 8999999999999 8888883 3555677766543
Q ss_pred -------------eeeecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHH
Q psy7769 228 -------------SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHM 293 (355)
Q Consensus 228 -------------~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~ 293 (355)
..+|+||||+| +.+++-+|+++++.++...| ++|++++++|||||+|||+|||++++|||++|++
T Consensus 147 ~~~~~~~~~~fD~Vl~d~Pcs~~g-~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~ 225 (274)
T 3ajd_A 147 KDYLLKNEIFFDKILLDAPCSGNI-IKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKY 225 (274)
T ss_dssp HHHHHHTTCCEEEEEEEECCC-------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHH
T ss_pred chhhhhccccCCEEEEcCCCCCCc-ccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHH
Confidence 34999999999 44444468888888888999 9999999999999999999999999999999999
Q ss_pred HHHhhhhccCceEEEeccc-ccccccccccccccCCCccEEEEecCCCCCCCceEEEEEEEc
Q psy7769 294 SLKRIWEETGCEIEIKDLS-QALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFDKI 354 (355)
Q Consensus 294 ~L~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~g~~~~P~~~~~~~gfFia~l~r~ 354 (355)
+|+++ . +++++++. +..+++. .+.... ..+.+++||.+ + ||+|+|+|.
T Consensus 226 ~l~~~---~--~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~P~~~---~-ff~a~l~k~ 274 (274)
T 3ajd_A 226 ILQKR---N--DVELIIIKANEFKGIN---IKEGYI-KGTLRVFPPNE---P-FFIAKLRKI 274 (274)
T ss_dssp HHHHC---S--SEEEECCCSTTCTTSC---EEECSS-TTCEEECTTSC---C-EEEEEEEEC
T ss_pred HHHhC---C--CcEEecCccccccCcc---cccccC-CCeEEECCCCC---C-EEEEEEEEC
Confidence 99875 2 35555553 2122211 111111 45789999975 3 999999984
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-38 Score=317.61 Aligned_cols=214 Identities=19% Similarity=0.232 Sum_probs=173.6
Q ss_pred CCCCCccceeEecCCCCcccCCCCCCCCcceeeEEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCC-CcE
Q psy7769 115 ELHISPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYP-DYY 193 (355)
Q Consensus 115 ~~~~p~~l~~~~~~~~~~~~~p~~~~g~~~~~~~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~-g~V 193 (355)
.+++|+.+.+. ..+++..+|.+..|. +++||.+|++++.++++++|++|||+|||||+||+++++.+++ ++|
T Consensus 215 ~~~~~~~~~~~--~~~~~~~~~~~~~G~-----~~~qd~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v 287 (450)
T 2yxl_A 215 SERVPTILKIK--GPYNFDTSSAFNEGK-----IIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKI 287 (450)
T ss_dssp CSSCTTEEEEE--SCCCTTSCHHHHTTS-----EEECCHHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEE
T ss_pred cCccCceEEeC--CCCCcccCchhhCce-----EEecCchhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEE
Confidence 35677777663 446788889999887 9999999999999999999999999999999999999998755 899
Q ss_pred EEEcCCchhh--HHhhccccccccCcceEEEEEec--------------ceeeecccCCCCCccCCc--cc--cchHHHH
Q psy7769 194 CMDGASLLPV--LALNIRPYDTVLDIHALKLVKVG--------------GSVVYSTCSLSPIQNDGV--VH--MSLKRIW 253 (355)
Q Consensus 194 ~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~D--------------a~~lDaPCSgsG~t~~~~--l~--~~~~~l~ 253 (355)
+|+|+++.|+ +++|+++ .|..++.++..| ...+|+||||+| +.+++ ++ |+++++.
T Consensus 288 ~a~D~s~~~l~~~~~~~~~----~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g-~~~~~pd~~~~~~~~~~~ 362 (450)
T 2yxl_A 288 YAFDVDKMRMKRLKDFVKR----MGIKIVKPLVKDARKAPEIIGEEVADKVLLDAPCTSSG-TIGKNPELRWRLREDKIN 362 (450)
T ss_dssp EEECSCHHHHHHHHHHHHH----TTCCSEEEECSCTTCCSSSSCSSCEEEEEEECCCCCGG-GTTTSTTHHHHCCTTSHH
T ss_pred EEEcCCHHHHHHHHHHHHH----cCCCcEEEEEcChhhcchhhccCCCCEEEEcCCCCCCe-eeccChhhhhhCCHHHHH
Confidence 9999999999 8888883 355566666544 334999999999 44444 44 6788899
Q ss_pred hhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceEEEecccccccccccccccccCCCccE
Q psy7769 254 EETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYG 332 (355)
Q Consensus 254 ~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g 332 (355)
.+..+| ++|.+++++|||||+|||+|||++++|||++|.++|+++ .+ ++++++...++ .+ ....+
T Consensus 363 ~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~---~~--~~~~~~~~~~~------~~---~~~~~ 428 (450)
T 2yxl_A 363 EMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVH---PE--FKLVPLKSPYD------PG---FLEGT 428 (450)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHC---SS--CEECCCCSSSE------EC---SSTTC
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhC---CC--CEEeecccccc------cc---cCCCe
Confidence 999999 999999999999999999999999999999999999975 23 44444432211 11 11346
Q ss_pred EEEecCCCCCCCceEEEEEEEcC
Q psy7769 333 HLVQPHLPSNFGPMYFCKFDKIK 355 (355)
Q Consensus 333 ~~~~P~~~~~~~gfFia~l~r~~ 355 (355)
.+++||.+ +++|||+|+|+|+|
T Consensus 429 ~~~~P~~~-~~dGff~a~l~k~~ 450 (450)
T 2yxl_A 429 MRAWPHRH-STIGFFYALLEKSK 450 (450)
T ss_dssp EEECHHHH-SSCCEEEEEEECC-
T ss_pred EEECCCCC-CCCceEEEEEEECC
Confidence 78999987 67999999999975
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=311.29 Aligned_cols=237 Identities=16% Similarity=0.181 Sum_probs=187.1
Q ss_pred CCChhhhhhh--cccc--------ccCCCCCcceeeCCC-------------------cCCCCCccceeEecCCCCcccC
Q psy7769 85 KGMEGFITDA--DYMD--------YYRPSPEVDFKVVPE-------------------TELHISPYLQAFSFPSGDISEF 135 (355)
Q Consensus 85 k~~~~~i~e~--~~~~--------~~~~~~~~~~~v~~~-------------------~~~~~p~~l~~~~~~~~~~~~~ 135 (355)
.+.|+|+.+. +.|+ +++.++++++|||+. +.+++|+.+.+ ...+++...
T Consensus 143 ~~~p~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~Rvn~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~--~~~~~~~~~ 220 (429)
T 1sqg_A 143 YLHPSWLLKRLQKAYPEQWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRL--ETPAPVHAL 220 (429)
T ss_dssp GCSCHHHHHHHHHHCTTTHHHHHHHHTSCCCEEEEECTTTCCHHHHHHHHHHTTCCEECCTTCTTEEEE--SSCCCGGGS
T ss_pred hcCcHHHHHHHHHHhhHHHHHHHHhCCCCCCeEEEEcCCCCCHHHHHHHHHhCCCceeecCCCCCEEEE--CCCCCcccC
Confidence 4577887764 2232 456777788888751 12456766655 344678889
Q ss_pred CCCCCCCcceeeEEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcccccc
Q psy7769 136 PSPKRGVTGVFNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDT 213 (355)
Q Consensus 136 p~~~~g~~~~~~~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~ 213 (355)
|.|..|. +++||.+|++++.++++++|++|||+|||||+||+++++.++.+.|+|+|+++.|+ +++|+++
T Consensus 221 ~~~~~G~-----~~~qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~--- 292 (429)
T 1sqg_A 221 PGFEDGW-----VTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR--- 292 (429)
T ss_dssp TTGGGTS-----EEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHH---
T ss_pred hHHhCCC-----eEeeCHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHH---
Confidence 9999887 99999999999999999999999999999999999999988668999999999999 8888883
Q ss_pred ccCcceEEEEEec--------------ceeeecccCCCCCccCCc--cc--cchHHHHhhhhHH-HHHHHHHhhccCCcE
Q psy7769 214 VLDIHALKLVKVG--------------GSVVYSTCSLSPIQNDGV--VH--MSLKRIWEETGCE-IEIKHALKLVKVGGS 274 (355)
Q Consensus 214 ~~g~~~v~~~~~D--------------a~~lDaPCSgsG~t~~~~--l~--~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~ 274 (355)
.|. ++.++..| ...+|+||||+| +.+++ ++ |++.++..+..+| ++|.+++++|||||+
T Consensus 293 -~g~-~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g-~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~ 369 (429)
T 1sqg_A 293 -LGM-KATVKQGDGRYPSQWCGEQQFDRILLDAPCSATG-VIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGT 369 (429)
T ss_dssp -TTC-CCEEEECCTTCTHHHHTTCCEEEEEEECCCCCGG-GTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEE
T ss_pred -cCC-CeEEEeCchhhchhhcccCCCCEEEEeCCCCccc-ccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCE
Confidence 233 24555544 344999999999 44444 44 6788899999999 999999999999999
Q ss_pred EEEEeCCCCCCCCHHHHHHHHHhhhhccCceEEEecccccccccccccccccCCCccEEEEecCCCCCCCceEEEEEEEc
Q psy7769 275 VVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFDKI 354 (355)
Q Consensus 275 lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~P~~~~~~~gfFia~l~r~ 354 (355)
|||||||++++|||.+|.++|+++ .+ +++++ . +. .. ..|.+++||.+ +++|||+|+|+|.
T Consensus 370 lvystcs~~~~ene~~v~~~l~~~---~~--~~~~~-~----~~--------~~-~~~~~~~P~~~-~~dGff~a~l~k~ 429 (429)
T 1sqg_A 370 LVYATCSVLPEENSLQIKAFLQRT---AD--AELCE-T----GT--------PE-QPGKQNLPGAE-EGDGFFYAKLIKK 429 (429)
T ss_dssp EEEEESCCCGGGTHHHHHHHHHHC---TT--CEECS-S----BC--------SS-SBSEEECCCTT-SCCSEEEEEEEC-
T ss_pred EEEEECCCChhhHHHHHHHHHHhC---CC--CEEeC-C----CC--------CC-CCeEEECCCCC-CCCceEEEEEEEC
Confidence 999999999999999999999975 23 33333 1 11 11 45789999997 7799999999984
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.2e-14 Score=131.77 Aligned_cols=123 Identities=17% Similarity=-0.030 Sum_probs=82.4
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCC
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPI 239 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~ 239 (355)
.++||++|||+|||||++|.++|+.++ .|+|+|+|+++.++ +.+..+ . ..|+.++.+|+...+..-.-.+
T Consensus 73 ~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~--~----r~nv~~i~~Da~~~~~~~~~~~- 145 (232)
T 3id6_C 73 PIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQ--R----RPNIFPLLADARFPQSYKSVVE- 145 (232)
T ss_dssp SCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHH--H----CTTEEEEECCTTCGGGTTTTCC-
T ss_pred CCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh--h----cCCeEEEEcccccchhhhcccc-
Confidence 388999999999999999999998764 69999999999987 444443 1 1468888888764221110000
Q ss_pred ccCCccccchHHHHhhhhHH-HHH-HHHHhhccCCcEEEEE---eC---CCCCCCCHHHHHHHHHhh
Q psy7769 240 QNDGVVHMSLKRIWEETGCE-IEI-KHALKLVKVGGSVVYS---TC---SLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 240 t~~~~l~~~~~~l~~l~~lQ-~lL-~~A~~~LkpGG~lVYs---TC---Sl~~~ENE~vV~~~L~~~ 298 (355)
. -++.+.. .. ...| ++| ..+.++|||||+++++ +| ++.++||..++.++|+++
T Consensus 146 ~--~D~I~~d--~a--~~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~ 206 (232)
T 3id6_C 146 N--VDVLYVD--IA--QPDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENS 206 (232)
T ss_dssp C--EEEEEEC--CC--CTTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHT
T ss_pred c--eEEEEec--CC--ChhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHC
Confidence 0 0100100 00 0123 444 5566699999999977 89 999999999999999864
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.7e-14 Score=138.51 Aligned_cols=131 Identities=18% Similarity=0.155 Sum_probs=97.8
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEE-
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVK- 224 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~- 224 (355)
|+.|..+..++...+ ++|.+|||+|||+|++|+++|... ..|+|+|+|+.++ +++|++ . .+..+ .+.+
T Consensus 198 f~dqr~~r~~l~~~~--~~g~~VLDlg~GtG~~sl~~a~~g--a~V~avDis~~al~~a~~n~~--~--ng~~~-~~~~~ 268 (393)
T 4dmg_A 198 YLDQRENRRLFEAMV--RPGERVLDVYSYVGGFALRAARKG--AYALAVDKDLEALGVLDQAAL--R--LGLRV-DIRHG 268 (393)
T ss_dssp CGGGHHHHHHHHTTC--CTTCEEEEESCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHH--H--HTCCC-EEEES
T ss_pred CCCHHHHHHHHHHHh--cCCCeEEEcccchhHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHH--H--hCCCC-cEEEc
Confidence 666888877776554 479999999999999999999864 4599999999999 888887 2 23221 2223
Q ss_pred ------------ecceeeecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCH--H
Q psy7769 225 ------------VGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQND--G 289 (355)
Q Consensus 225 ------------~Da~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE--~ 289 (355)
+|...+|+||-.. +...+......+ +++..++++|||||.|+|+|||....+++ .
T Consensus 269 D~~~~l~~~~~~fD~Ii~dpP~f~~----------~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~~~~~f~~ 338 (393)
T 4dmg_A 269 EALPTLRGLEGPFHHVLLDPPTLVK----------RPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHLRLEDLLE 338 (393)
T ss_dssp CHHHHHHTCCCCEEEEEECCCCCCS----------SGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHH
T ss_pred cHHHHHHHhcCCCCEEEECCCcCCC----------CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHH
Confidence 3444589998221 223344444455 99999999999999999999999988877 6
Q ss_pred HHHHHHHh
Q psy7769 290 VVHMSLKR 297 (355)
Q Consensus 290 vV~~~L~~ 297 (355)
+|..++..
T Consensus 339 ~v~~a~~~ 346 (393)
T 4dmg_A 339 VARRAAAD 346 (393)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 67666654
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=7.9e-13 Score=130.10 Aligned_cols=138 Identities=14% Similarity=0.074 Sum_probs=98.1
Q ss_pred EEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEec
Q psy7769 149 YCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVG 226 (355)
Q Consensus 149 ~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~D 226 (355)
+.|...+.+++ .. +|.+|||+|||+|+.+.++|.. ..+|+++|+++.++ +++|++ . .+..++.++.+|
T Consensus 196 ~~~~~~~~~~~---~~-~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~--~--n~~~~~~~~~~d 265 (382)
T 1wxx_A 196 LDQRENRLYME---RF-RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENAR--L--NGLGNVRVLEAN 265 (382)
T ss_dssp GGGHHHHHHGG---GC-CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHH--H--TTCTTEEEEESC
T ss_pred cchHHHHHHHH---hc-CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHH--H--cCCCCceEEECC
Confidence 34544444433 33 7899999999999999999987 37899999999999 888887 3 355557777766
Q ss_pred ce----------------eeecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCC--
Q psy7769 227 GS----------------VVYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQN-- 287 (355)
Q Consensus 227 a~----------------~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~EN-- 287 (355)
+. .+|+|+.+.+ ...+......+ +++..++++|+|||.|+++||+.+..++
T Consensus 266 ~~~~~~~~~~~~~~fD~Ii~dpP~~~~~----------~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 335 (382)
T 1wxx_A 266 AFDLLRRLEKEGERFDLVVLDPPAFAKG----------KKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLF 335 (382)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCSCCS----------TTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHH
T ss_pred HHHHHHHHHhcCCCeeEEEECCCCCCCC----------hhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHH
Confidence 42 3888874332 22233333444 8999999999999999999999988765
Q ss_pred HHHHHHHHHhhhhccCceEEEec
Q psy7769 288 DGVVHMSLKRIWEETGCEIEIKD 310 (355)
Q Consensus 288 E~vV~~~L~~~~~~~~~~~~~~~ 310 (355)
+.++...+.. .|..++.+.
T Consensus 336 ~~~i~~~~~~----~g~~~~~i~ 354 (382)
T 1wxx_A 336 YAMVAEAAQD----AHRLLRVVE 354 (382)
T ss_dssp HHHHHHHHHH----TTCCEEEEE
T ss_pred HHHHHHHHHH----cCCeEEEEE
Confidence 4566555443 344455443
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-11 Score=110.19 Aligned_cols=121 Identities=11% Similarity=0.039 Sum_probs=92.9
Q ss_pred echhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcc-eEEEEEecc
Q psy7769 151 MDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIH-ALKLVKVGG 227 (355)
Q Consensus 151 QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~-~v~~~~~Da 227 (355)
+..-..+....+++.+|++|||+|||+|..+..++.. .++|+++|+++.++ ++++++ . .+.. ++.++.+|+
T Consensus 40 ~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~--~--~g~~~~v~~~~~d~ 113 (204)
T 3njr_A 40 KSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNID--T--YGLSPRMRAVQGTA 113 (204)
T ss_dssp CHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHH--H--TTCTTTEEEEESCT
T ss_pred cHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHH--H--cCCCCCEEEEeCch
Confidence 3444556677788999999999999999999999987 48999999999999 788887 3 3555 789999887
Q ss_pred ee-------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 228 SV-------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 228 ~~-------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
.. .|...++.+ + ..+ +++.+.+.|||||++++++|+. ++...+..++++.
T Consensus 114 ~~~~~~~~~~D~v~~~~~-------------~----~~~-~l~~~~~~LkpgG~lv~~~~~~---~~~~~~~~~l~~~ 170 (204)
T 3njr_A 114 PAALADLPLPEAVFIGGG-------------G----SQA-LYDRLWEWLAPGTRIVANAVTL---ESETLLTQLHARH 170 (204)
T ss_dssp TGGGTTSCCCSEEEECSC-------------C----CHH-HHHHHHHHSCTTCEEEEEECSH---HHHHHHHHHHHHH
T ss_pred hhhcccCCCCCEEEECCc-------------c----cHH-HHHHHHHhcCCCcEEEEEecCc---ccHHHHHHHHHhC
Confidence 54 222221111 0 222 7999999999999999999987 6777777777753
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.7e-12 Score=118.61 Aligned_cols=123 Identities=11% Similarity=0.070 Sum_probs=85.8
Q ss_pred echhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEec
Q psy7769 151 MDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVG 226 (355)
Q Consensus 151 QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~D 226 (355)
+...+.+...++...++.+|||+|||+|..+..+|..++ .++|+++|+++.++ ++++++ . .+. .++.+..+|
T Consensus 48 ~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~--~--~g~~~~v~~~~~d 123 (248)
T 3tfw_A 48 AANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQ--L--AGVDQRVTLREGP 123 (248)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHH--H--TTCTTTEEEEESC
T ss_pred CHHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH--H--cCCCCcEEEEEcC
Confidence 455566666666777899999999999999999998875 58999999999999 888887 3 344 368999988
Q ss_pred ceeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 227 GSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 227 a~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
+...-+.....+ ..+. +..... .......++.+.++|||||.|++.++...
T Consensus 124 ~~~~l~~~~~~~-~fD~-V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~~~ 174 (248)
T 3tfw_A 124 ALQSLESLGECP-AFDL-IFIDAD----KPNNPHYLRWALRYSRPGTLIIGDNVVRD 174 (248)
T ss_dssp HHHHHHTCCSCC-CCSE-EEECSC----GGGHHHHHHHHHHTCCTTCEEEEECCSGG
T ss_pred HHHHHHhcCCCC-CeEE-EEECCc----hHHHHHHHHHHHHhcCCCeEEEEeCCCcC
Confidence 754211111101 1111 100000 11122679999999999999999888765
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.6e-12 Score=126.88 Aligned_cols=132 Identities=14% Similarity=0.026 Sum_probs=96.3
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-c-eEEEE
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-H-ALKLV 223 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~-~v~~~ 223 (355)
|..|.....++..+ .+|.+|||+|||+|+.++++|... ..+|+++|+++.++ +++|++ . .+. . +++++
T Consensus 205 f~~~~~~~~~l~~~---~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~--~--ngl~~~~v~~~ 276 (396)
T 3c0k_A 205 YLDQRDSRLATRRY---VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVE--L--NKLDLSKAEFV 276 (396)
T ss_dssp CGGGHHHHHHHHHH---CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHH--H--TTCCGGGEEEE
T ss_pred CcCHHHHHHHHHHh---hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH--H--cCCCccceEEE
Confidence 33565665565554 578999999999999999999864 36899999999999 888887 3 344 3 67777
Q ss_pred Eecc----------------eeeecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCC-
Q psy7769 224 KVGG----------------SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPI- 285 (355)
Q Consensus 224 ~~Da----------------~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~- 285 (355)
.+|+ ..+|+|+.+.+ .. .+......+ +++..++++|+|||.+++++|+.+..
T Consensus 277 ~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~~~---~~-------~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 346 (396)
T 3c0k_A 277 RDDVFKLLRTYRDRGEKFDVIVMDPPKFVEN---KS-------QLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTS 346 (396)
T ss_dssp ESCHHHHHHHHHHTTCCEEEEEECCSSTTTC---SS-------SSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCH
T ss_pred ECCHHHHHHHHHhcCCCCCEEEECCCCCCCC---hh-------HHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCH
Confidence 7664 23888874322 11 111112233 88999999999999999999998877
Q ss_pred -CCHHHHHHHHHh
Q psy7769 286 -QNDGVVHMSLKR 297 (355)
Q Consensus 286 -ENE~vV~~~L~~ 297 (355)
++..++...+..
T Consensus 347 ~~~~~~i~~~~~~ 359 (396)
T 3c0k_A 347 DLFQKIIADAAID 359 (396)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 667777766654
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.30 E-value=6e-12 Score=124.20 Aligned_cols=140 Identities=18% Similarity=0.100 Sum_probs=97.1
Q ss_pred EechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcc-eEEEEEec
Q psy7769 150 CMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIH-ALKLVKVG 226 (355)
Q Consensus 150 ~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~-~v~~~~~D 226 (355)
.|.....++..+ .++|.+|||+|||+|+.+.++|.. +.++|+++|+++.++ +++|++ . .+.. ++.++..|
T Consensus 203 ~~~~~~~~~~~~--~~~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~--~--n~~~~~v~~~~~d 275 (396)
T 2as0_A 203 DQRENRLALEKW--VQPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAK--L--NGVEDRMKFIVGS 275 (396)
T ss_dssp TTHHHHHHHGGG--CCTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHH--H--TTCGGGEEEEESC
T ss_pred CHHHHHHHHHHH--hhCCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHH--H--cCCCccceEEECC
Confidence 344554454433 248999999999999999999986 336899999999999 888887 3 3444 67887766
Q ss_pred ce----------------eeecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCC--
Q psy7769 227 GS----------------VVYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQN-- 287 (355)
Q Consensus 227 a~----------------~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~EN-- 287 (355)
+. .+|+|+.+.. ...+......+ +++..++++|+|||.|+|++|+.+..++
T Consensus 276 ~~~~~~~~~~~~~~fD~Vi~dpP~~~~~----------~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~ 345 (396)
T 2as0_A 276 AFEEMEKLQKKGEKFDIVVLDPPAFVQH----------EKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMF 345 (396)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCSCSS----------GGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHH
T ss_pred HHHHHHHHHhhCCCCCEEEECCCCCCCC----------HHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHHHH
Confidence 42 2777763321 22233333334 8999999999999999999999876653
Q ss_pred HHHHHHHHHhhhhccCceEEEec
Q psy7769 288 DGVVHMSLKRIWEETGCEIEIKD 310 (355)
Q Consensus 288 E~vV~~~L~~~~~~~~~~~~~~~ 310 (355)
+.++...... .+..+..+.
T Consensus 346 ~~~v~~~~~~----~~~~~~~i~ 364 (396)
T 2as0_A 346 KDMIIAAGAK----AGKFLKMLE 364 (396)
T ss_dssp HHHHHHHHHH----TTEEEEESS
T ss_pred HHHHHHHHHH----cCCeEEEEe
Confidence 4555544432 344555544
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.5e-13 Score=134.19 Aligned_cols=174 Identities=16% Similarity=0.041 Sum_probs=107.4
Q ss_pred echhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcccccc-----------ccCc
Q psy7769 151 MDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDT-----------VLDI 217 (355)
Q Consensus 151 QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~-----------~~g~ 217 (355)
|.....+...++...+|.+|||+|||+|.+++++|...+..+|+++|+++.++ +++|+++... ..+.
T Consensus 32 ~~~nr~l~~~~l~~~~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl 111 (378)
T 2dul_A 32 MALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE 111 (378)
T ss_dssp GHHHHHHHHHHHHHHCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS
T ss_pred hHHHHHHHHHHHHHcCCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCC
Confidence 44445454333333378999999999999999999886556899999999999 8899883100 0044
Q ss_pred ceEEEEEecce-------------eeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCC
Q psy7769 218 HALKLVKVGGS-------------VVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSP 284 (355)
Q Consensus 218 ~~v~~~~~Da~-------------~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~ 284 (355)
.++++++.|+. .+||||+. ..+|..|++.||+|| ++|.||+-..
T Consensus 112 ~~i~v~~~Da~~~~~~~~~~fD~I~lDP~~~~----------------------~~~l~~a~~~lk~gG-~l~vt~td~~ 168 (378)
T 2dul_A 112 KTIVINHDDANRLMAERHRYFHFIDLDPFGSP----------------------MEFLDTALRSAKRRG-ILGVTATDGA 168 (378)
T ss_dssp SEEEEEESCHHHHHHHSTTCEEEEEECCSSCC----------------------HHHHHHHHHHEEEEE-EEEEEECCHH
T ss_pred CceEEEcCcHHHHHHhccCCCCEEEeCCCCCH----------------------HHHHHHHHHhcCCCC-EEEEEeecch
Confidence 55888877752 27777631 157899999999999 7889998655
Q ss_pred CCCHHHHHHHHHhhhhccCceEEEecccccc-ccccccc-ccccCCCccEEEEecCCCCCCCceEEEEEEEc
Q psy7769 285 IQNDGVVHMSLKRIWEETGCEIEIKDLSQAL-RPLKSLF-SFANINLSYGHLVQPHLPSNFGPMYFCKFDKI 354 (355)
Q Consensus 285 ~ENE~vV~~~L~~~~~~~~~~~~~~~l~~~~-~~~~~~~-~~~~~~~~~g~~~~P~~~~~~~gfFia~l~r~ 354 (355)
..+.......+.++ |.. +....... .++.-.. .......++|..+.|... ..+|||+++++|.
T Consensus 169 ~l~~~~~~~~~~~y----g~~--p~~~~~~~e~~~ri~l~~~~~~~~~~g~~i~P~~~-~~~~~y~rv~vrv 233 (378)
T 2dul_A 169 PLCGAHPRACLRKY----LAV--PLRGELCHEVGTRILVGVIARYAAKYDLGIDVILA-YYKDHYFRAFVKL 233 (378)
T ss_dssp HHTTSSHHHHHHHH----SSB--CCCSTTHHHHHHHHHHHHHHHHHHTTTEEEEEEEE-EEETTEEEEEEEE
T ss_pred hhccccHHHHHHHc----cCC--CcccccccchhHHHHHHHHHHhcCcCCcEEEEEEE-EecCCEEEEEEEE
Confidence 33333344444432 211 11111000 0000000 000001246778888653 4468999999874
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=6.8e-12 Score=112.86 Aligned_cols=122 Identities=12% Similarity=0.004 Sum_probs=83.5
Q ss_pred echhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEec
Q psy7769 151 MDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVG 226 (355)
Q Consensus 151 QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~D 226 (355)
+.....+...++...++.+|||+|||+|..+.++++.++ .++|+++|+++.++ +++++. . .+. +++.++.+|
T Consensus 43 ~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~--~--~~~~~~v~~~~~d 118 (223)
T 3duw_A 43 SPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIE--R--ANLNDRVEVRTGL 118 (223)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHH--H--TTCTTTEEEEESC
T ss_pred CHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH--H--cCCCCcEEEEEcC
Confidence 455566666666777889999999999999999998875 58999999999999 888887 3 344 348888888
Q ss_pred ceeeecc--cCCCCCccCCcccc-chHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 227 GSVVYST--CSLSPIQNDGVVHM-SLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 227 a~~lDaP--CSgsG~t~~~~l~~-~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
+...-+. -.+.+ . -++.+ ... ......+++.+.++|||||.|++..+...
T Consensus 119 ~~~~~~~~~~~~~~-~--fD~v~~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 171 (223)
T 3duw_A 119 ALDSLQQIENEKYE-P--FDFIFIDAD----KQNNPAYFEWALKLSRPGTVIIGDNVVRE 171 (223)
T ss_dssp HHHHHHHHHHTTCC-C--CSEEEECSC----GGGHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred HHHHHHHHHhcCCC-C--cCEEEEcCC----cHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence 7431110 00000 0 11111 000 01122789999999999999998876654
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.3e-11 Score=108.09 Aligned_cols=135 Identities=12% Similarity=0.027 Sum_probs=99.4
Q ss_pred EechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc
Q psy7769 150 CMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG 227 (355)
Q Consensus 150 ~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da 227 (355)
.++....+....+.+++|++|||+|||+|..+..++...+.++|+++|+++.++ ++++++ . .+..++.++..|+
T Consensus 24 ~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~--~--~~~~~v~~~~~d~ 99 (204)
T 3e05_A 24 TKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLK--K--FVARNVTLVEAFA 99 (204)
T ss_dssp CCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHH--H--HTCTTEEEEECCT
T ss_pred ChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH--H--hCCCcEEEEeCCh
Confidence 345555667777889999999999999999999999987668999999999999 888887 3 3456788988887
Q ss_pred ee-------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhhh
Q psy7769 228 SV-------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWE 300 (355)
Q Consensus 228 ~~-------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~~ 300 (355)
.. .|.-.+..+ . ....++++.+.++|||||++++++++. ++...+...+++
T Consensus 100 ~~~~~~~~~~D~i~~~~~----------~------~~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~~~~~~~l~~--- 157 (204)
T 3e05_A 100 PEGLDDLPDPDRVFIGGS----------G------GMLEEIIDAVDRRLKSEGVIVLNAVTL---DTLTKAVEFLED--- 157 (204)
T ss_dssp TTTCTTSCCCSEEEESCC----------T------TCHHHHHHHHHHHCCTTCEEEEEECBH---HHHHHHHHHHHH---
T ss_pred hhhhhcCCCCCEEEECCC----------C------cCHHHHHHHHHHhcCCCeEEEEEeccc---ccHHHHHHHHHH---
Confidence 42 222221111 0 023378999999999999999998887 566666677765
Q ss_pred ccCceEEEecc
Q psy7769 301 ETGCEIEIKDL 311 (355)
Q Consensus 301 ~~~~~~~~~~l 311 (355)
.|++++...+
T Consensus 158 -~g~~~~~~~~ 167 (204)
T 3e05_A 158 -HGYMVEVACV 167 (204)
T ss_dssp -TTCEEEEEEE
T ss_pred -CCCceeEEEE
Confidence 3545554443
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.19 E-value=8.9e-11 Score=108.73 Aligned_cols=133 Identities=11% Similarity=0.063 Sum_probs=87.4
Q ss_pred cHHHHHhhCCC-CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEeccee-
Q psy7769 155 SLLPVLALNIR-PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSV- 229 (355)
Q Consensus 155 S~l~~~~L~~~-pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~- 229 (355)
+.+.+..+.++ ++.+|||+|||+|..+..+++... +.|+|+|+++.++ +++|+. . .+. .++.+++.|...
T Consensus 37 ~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~-~~v~gvDi~~~~~~~a~~n~~--~--~~~~~~v~~~~~D~~~~ 111 (259)
T 3lpm_A 37 AVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTK-AKIVGVEIQERLADMAKRSVA--Y--NQLEDQIEIIEYDLKKI 111 (259)
T ss_dssp HHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCC-CEEEEECCSHHHHHHHHHHHH--H--TTCTTTEEEECSCGGGG
T ss_pred HHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcC-CcEEEEECCHHHHHHHHHHHH--H--CCCcccEEEEECcHHHh
Confidence 77888888888 999999999999999999998753 4999999999999 788887 3 233 357777766532
Q ss_pred -------------eecccCCC---CCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHH
Q psy7769 230 -------------VYSTCSLS---PIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHM 293 (355)
Q Consensus 230 -------------lDaPCSgs---G~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~ 293 (355)
+++|+... |... ..-.....+......+..+++.+.++|||||++++.. +.++...+..
T Consensus 112 ~~~~~~~~fD~Ii~npPy~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~----~~~~~~~~~~ 186 (259)
T 3lpm_A 112 TDLIPKERADIVTCNPPYFATPDTSLKN-TNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH----RPERLLDIID 186 (259)
T ss_dssp GGTSCTTCEEEEEECCCC------------------------HHHHHHHHHHHHHEEEEEEEEEEE----CTTTHHHHHH
T ss_pred hhhhccCCccEEEECCCCCCCccccCCC-CchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE----cHHHHHHHHH
Confidence 66666433 2100 0000000111111223389999999999999999943 3455555666
Q ss_pred HHHh
Q psy7769 294 SLKR 297 (355)
Q Consensus 294 ~L~~ 297 (355)
.+.+
T Consensus 187 ~l~~ 190 (259)
T 3lpm_A 187 IMRK 190 (259)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.8e-11 Score=128.32 Aligned_cols=129 Identities=12% Similarity=0.034 Sum_probs=92.2
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcc--eEEEE
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIH--ALKLV 223 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~--~v~~~ 223 (355)
|+-|.....++.... +|.+|||+|||+|+.+++++... ..+|+++|+|+.++ +++|++ . .+.. +++++
T Consensus 524 f~d~r~~r~~l~~~~---~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~--~--ngl~~~~v~~i 595 (703)
T 3v97_A 524 FLDHRIARRMLGQMS---KGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLR--L--NGLTGRAHRLI 595 (703)
T ss_dssp CGGGHHHHHHHHHHC---TTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHH--H--TTCCSTTEEEE
T ss_pred cccHHHHHHHHHHhc---CCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHH--H--cCCCccceEEE
Confidence 445777777766543 68999999999999999998743 35799999999999 888987 3 3443 68888
Q ss_pred Eecce-------------eeecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHH
Q psy7769 224 KVGGS-------------VVYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDG 289 (355)
Q Consensus 224 ~~Da~-------------~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~ 289 (355)
++|+. .+|+||.+.+. . ..........+ +++..+.++|+|||+|++|+|+-....++.
T Consensus 596 ~~D~~~~l~~~~~~fD~Ii~DPP~f~~~~---~-----~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~~~ 667 (703)
T 3v97_A 596 QADCLAWLREANEQFDLIFIDPPTFSNSK---R-----MEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLD 667 (703)
T ss_dssp ESCHHHHHHHCCCCEEEEEECCCSBC---------------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCCHH
T ss_pred ecCHHHHHHhcCCCccEEEECCccccCCc---c-----chhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccCHH
Confidence 76653 39999844320 0 00111122233 899999999999999999999977777754
Q ss_pred HHH
Q psy7769 290 VVH 292 (355)
Q Consensus 290 vV~ 292 (355)
..+
T Consensus 668 ~l~ 670 (703)
T 3v97_A 668 GLA 670 (703)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.2e-11 Score=109.79 Aligned_cols=114 Identities=13% Similarity=0.042 Sum_probs=75.5
Q ss_pred cHHHHHh------hCCCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEe
Q psy7769 155 SLLPVLA------LNIRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKV 225 (355)
Q Consensus 155 S~l~~~~------L~~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~ 225 (355)
|-|++.+ |.++||++|||+|||+|..+.++|... ..|+|+|+|+++.++ ++++++ . ..|+..+..
T Consensus 60 sklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~--~----~~ni~~V~~ 133 (233)
T 4df3_A 60 SKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVR--D----RRNIFPILG 133 (233)
T ss_dssp CHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHST--T----CTTEEEEES
T ss_pred hHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhH--h----hcCeeEEEE
Confidence 4455544 458999999999999999999999986 459999999999999 777776 2 246777777
Q ss_pred cceeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 226 GGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 226 Da~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
|....+.+--..+ .-++.+. .+..-...+.++.++.++|||||+++.+.
T Consensus 134 d~~~p~~~~~~~~---~vDvVf~--d~~~~~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 134 DARFPEKYRHLVE---GVDGLYA--DVAQPEQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp CTTCGGGGTTTCC---CEEEEEE--CCCCTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eccCccccccccc---eEEEEEE--eccCChhHHHHHHHHHHhccCCCEEEEEE
Confidence 7654111100000 0000000 00000011167999999999999999874
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=6e-11 Score=111.66 Aligned_cols=114 Identities=18% Similarity=0.108 Sum_probs=84.3
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcc-eEEEEEeccee-----------
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIH-ALKLVKVGGSV----------- 229 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~-~v~~~~~Da~~----------- 229 (355)
+++|++|||+|||+|+.+..+|..... +|+|+|+++.++ +++|++ . .+.. +++++++|+..
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~--~--n~~~~~v~~~~~D~~~~~~~~~fD~Vi 197 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIH--L--NKVEDRMSAYNMDNRDFPGENIADRIL 197 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHH--H--TTCTTTEEEECSCTTTCCCCSCEEEEE
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHH--H--cCCCceEEEEECCHHHhcccCCccEEE
Confidence 568999999999999999999988643 799999999999 888887 3 3443 47888888753
Q ss_pred eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC---CCCCHHHHHHHHHhhhhccCceE
Q psy7769 230 VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS---PIQNDGVVHMSLKRIWEETGCEI 306 (355)
Q Consensus 230 lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~---~~ENE~vV~~~L~~~~~~~~~~~ 306 (355)
+|+|+ .. .+++..++++|||||.+++++|+-. ..+....+..++++ .|+++
T Consensus 198 ~~~p~-------------~~---------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~----~G~~~ 251 (278)
T 2frn_A 198 MGYVV-------------RT---------HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKE----YGYDV 251 (278)
T ss_dssp ECCCS-------------SG---------GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHH----TTCEE
T ss_pred ECCch-------------hH---------HHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHH----cCCee
Confidence 33332 00 1568899999999999999999853 34445555555554 46565
Q ss_pred EE
Q psy7769 307 EI 308 (355)
Q Consensus 307 ~~ 308 (355)
+.
T Consensus 252 ~~ 253 (278)
T 2frn_A 252 EK 253 (278)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=4.3e-11 Score=104.37 Aligned_cols=112 Identities=13% Similarity=0.063 Sum_probs=74.0
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee--------eec
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV--------VYS 232 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~--------lDa 232 (355)
.+++|++|||+|||+|..+..++.. .++|+|+|+++.++ ++++++ . .+..++.++..|... +|.
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~--~--~~~~~v~~~~~~~~~l~~~~~~~fD~ 92 (185)
T 3mti_A 19 VLDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLS--D--LGIENTELILDGHENLDHYVREPIRA 92 (185)
T ss_dssp TCCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHH--H--HTCCCEEEEESCGGGGGGTCCSCEEE
T ss_pred hCCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHH--H--cCCCcEEEEeCcHHHHHhhccCCcCE
Confidence 4678999999999999999999987 48999999999999 888887 3 344678888755433 343
Q ss_pred ccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCC
Q psy7769 233 TCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPI 285 (355)
Q Consensus 233 PCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ 285 (355)
.++..|. +......+......+ .+|+.+.++|||||+++.+.++-++.
T Consensus 93 v~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 141 (185)
T 3mti_A 93 AIFNLGY-----LPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDG 141 (185)
T ss_dssp EEEEEC----------------CHHHHHHHHHHHHHHEEEEEEEEEEEC-----
T ss_pred EEEeCCC-----CCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCC
Confidence 3322221 001111111122223 78999999999999999988875543
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.15 E-value=7.1e-11 Score=106.58 Aligned_cols=139 Identities=6% Similarity=-0.089 Sum_probs=89.4
Q ss_pred EechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEe
Q psy7769 150 CMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKV 225 (355)
Q Consensus 150 ~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~ 225 (355)
+++..+.+...++...++.+|||+|||+|..|.++|+.++ .++|+++|+++.++ ++++++ . .+. ++++++.+
T Consensus 42 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~--~--~~~~~~v~~~~~ 117 (221)
T 3u81_A 42 VGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLN--F--AGLQDKVTILNG 117 (221)
T ss_dssp CCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHH--H--HTCGGGEEEEES
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHH--H--cCCCCceEEEEC
Confidence 3556667777777777889999999999999999998764 58999999999999 888887 3 344 46899999
Q ss_pred cceeeecccCC-CCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 226 GGSVVYSTCSL-SPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 226 Da~~lDaPCSg-sG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
|+...-+.... .+ ...-++.+............+++..+ ++|||||+||+.+|... +...+..++..
T Consensus 118 d~~~~l~~~~~~~~-~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~~---~~~~~~~~l~~ 185 (221)
T 3u81_A 118 ASQDLIPQLKKKYD-VDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIVP---GTPDFLAYVRG 185 (221)
T ss_dssp CHHHHGGGTTTTSC-CCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCCC---CCHHHHHHHHH
T ss_pred CHHHHHHHHHHhcC-CCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCCc---chHHHHHHHhh
Confidence 87442111100 00 00111111000001111111566666 99999999999999863 33444455544
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=6.2e-11 Score=106.75 Aligned_cols=130 Identities=15% Similarity=0.082 Sum_probs=83.8
Q ss_pred EEEechhcH-HHHHhh--CCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhcccccc-ccCcceE
Q psy7769 148 YYCMDGASL-LPVLAL--NIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDT-VLDIHAL 220 (355)
Q Consensus 148 ~~~QD~aS~-l~~~~L--~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~-~~g~~~v 220 (355)
.+++++... ....++ .+++|++|||+|||+|.++.++++.++ .++|+++|+++.++ +++++.+... ..+..++
T Consensus 56 ~~~~~p~~~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v 135 (226)
T 1i1n_A 56 ATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRV 135 (226)
T ss_dssp EEECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSE
T ss_pred ceecCHHHHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcE
Confidence 556665522 223344 378999999999999999999998863 47999999999999 7777762100 0013468
Q ss_pred EEEEecceeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHH
Q psy7769 221 KLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDG 289 (355)
Q Consensus 221 ~~~~~Da~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~ 289 (355)
.+...|+.....+- + ..+. +... ..+..+++++.+.|||||++++++|+...+++..
T Consensus 136 ~~~~~d~~~~~~~~---~-~fD~-i~~~-------~~~~~~~~~~~~~LkpgG~lv~~~~~~~~~~~~~ 192 (226)
T 1i1n_A 136 QLVVGDGRMGYAEE---A-PYDA-IHVG-------AAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLE 192 (226)
T ss_dssp EEEESCGGGCCGGG---C-CEEE-EEEC-------SBBSSCCHHHHHTEEEEEEEEEEESCTTSCEEEE
T ss_pred EEEECCcccCcccC---C-CcCE-EEEC-------CchHHHHHHHHHhcCCCcEEEEEEecCCCceEEE
Confidence 88888864211100 0 0000 0000 0001346788899999999999999987666643
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.6e-10 Score=106.70 Aligned_cols=123 Identities=14% Similarity=-0.034 Sum_probs=84.0
Q ss_pred EechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEe
Q psy7769 150 CMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKV 225 (355)
Q Consensus 150 ~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~ 225 (355)
++.....+...++...++.+|||+|||+|..|..+|..++ .++|+++|+++.++ ++++++ . .+. .+++++.+
T Consensus 44 i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~--~--~g~~~~i~~~~g 119 (242)
T 3r3h_A 44 VAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWR--E--AKQEHKIKLRLG 119 (242)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHH--H--TTCTTTEEEEES
T ss_pred cCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH--H--cCCCCcEEEEEc
Confidence 4556666777777777788999999999999999999775 58999999999999 888887 3 344 47899988
Q ss_pred cceeeecccC--C-CCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 226 GGSVVYSTCS--L-SPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 226 Da~~lDaPCS--g-sG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
|+..+.+... + .+ +. ++.+.... .......++.++++|||||.|++..+.+
T Consensus 120 da~~~l~~~~~~~~~~-~f--D~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~~ 173 (242)
T 3r3h_A 120 PALDTLHSLLNEGGEH-QF--DFIFIDAD---KTNYLNYYELALKLVTPKGLIAIDNIFW 173 (242)
T ss_dssp CHHHHHHHHHHHHCSS-CE--EEEEEESC---GGGHHHHHHHHHHHEEEEEEEEEECSSS
T ss_pred CHHHHHHHHhhccCCC-CE--eEEEEcCC---hHHhHHHHHHHHHhcCCCeEEEEECCcc
Confidence 8753211100 0 00 00 11110000 0112267999999999999999876554
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.13 E-value=6.4e-10 Score=95.60 Aligned_cols=119 Identities=17% Similarity=0.143 Sum_probs=88.0
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcc-eEEEEEeccee--
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIH-ALKLVKVGGSV-- 229 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~-~v~~~~~Da~~-- 229 (355)
.......+.+.+|++|||+|||+|..+..++...+.++|+++|+++.++ +++++. . .+.. ++ ++..|+..
T Consensus 14 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~--~--~~~~~~~-~~~~d~~~~~ 88 (178)
T 3hm2_A 14 RALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAI--N--LGVSDRI-AVQQGAPRAF 88 (178)
T ss_dssp HHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHH--T--TTCTTSE-EEECCTTGGG
T ss_pred HHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHH--H--hCCCCCE-EEecchHhhh
Confidence 3455566788999999999999999999999876568999999999999 788877 3 3444 67 77777632
Q ss_pred ------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 230 ------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 230 ------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
+|.-.+..+ +.+ ..+++.+.++|||||++++++++. ++...+..+++++
T Consensus 89 ~~~~~~~D~i~~~~~------~~~-----------~~~l~~~~~~L~~gG~l~~~~~~~---~~~~~~~~~~~~~ 143 (178)
T 3hm2_A 89 DDVPDNPDVIFIGGG------LTA-----------PGVFAAAWKRLPVGGRLVANAVTV---ESEQMLWALRKQF 143 (178)
T ss_dssp GGCCSCCSEEEECC-------TTC-----------TTHHHHHHHTCCTTCEEEEEECSH---HHHHHHHHHHHHH
T ss_pred hccCCCCCEEEECCc------ccH-----------HHHHHHHHHhcCCCCEEEEEeecc---ccHHHHHHHHHHc
Confidence 222221111 001 267999999999999999999887 6666777777654
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-10 Score=113.98 Aligned_cols=117 Identities=9% Similarity=0.006 Sum_probs=83.3
Q ss_pred echhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcc--eEEEEEec
Q psy7769 151 MDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIH--ALKLVKVG 226 (355)
Q Consensus 151 QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~--~v~~~~~D 226 (355)
|.....+....+ .+|.+|||+|||+|+.++++|... ..+|+++|+++.++ +++|++ . .+.. +++++.+|
T Consensus 199 ~~~~~~~~~~~~--~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~--~--n~~~~~~v~~~~~D 271 (385)
T 2b78_A 199 QRQVRNELINGS--AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFE--A--NHLDMANHQLVVMD 271 (385)
T ss_dssp GHHHHHHHHHTT--TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHH--H--TTCCCTTEEEEESC
T ss_pred HHHHHHHHHHHh--cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH--H--cCCCccceEEEECC
Confidence 444445555444 678999999999999999999753 25899999999999 888887 3 3443 68887766
Q ss_pred c----------------eeeecccCCCCCccCCccccchHHHHhhhh-HHHHHHHHHhhccCCcEEEEEeCCCCC
Q psy7769 227 G----------------SVVYSTCSLSPIQNDGVVHMSLKRIWEETG-CEIEIKHALKLVKVGGSVVYSTCSLSP 284 (355)
Q Consensus 227 a----------------~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~-lQ~lL~~A~~~LkpGG~lVYsTCSl~~ 284 (355)
+ ..+|||+.+.+ .+ ....... +.+++..+.++|+|||.|++++|+-..
T Consensus 272 ~~~~l~~~~~~~~~fD~Ii~DPP~~~~~---~~-------~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~ 336 (385)
T 2b78_A 272 VFDYFKYARRHHLTYDIIIIDPPSFARN---KK-------EVFSVSKDYHKLIRQGLEILSENGLIIASTNAANM 336 (385)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCC---------------CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS
T ss_pred HHHHHHHHHHhCCCccEEEECCCCCCCC---hh-------hHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcC
Confidence 4 23888884321 00 0111111 227899999999999999999998775
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-10 Score=112.85 Aligned_cols=141 Identities=10% Similarity=-0.087 Sum_probs=93.7
Q ss_pred echhcHHHHHhhC-CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcc--eEEEEEe
Q psy7769 151 MDGASLLPVLALN-IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIH--ALKLVKV 225 (355)
Q Consensus 151 QD~aS~l~~~~L~-~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~--~v~~~~~ 225 (355)
|.....++...+. ..+|.+|||+|||+|+.+..++... .+|+++|+|+.++ +++|++ . .+.. ++.+++.
T Consensus 137 q~~~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~--~--~gl~~~~v~~i~~ 210 (332)
T 2igt_A 137 QIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQV--L--AGLEQAPIRWICE 210 (332)
T ss_dssp GHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHH--H--HTCTTSCEEEECS
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHH--H--cCCCccceEEEEC
Confidence 4444444555553 4578899999999999999999864 4999999999999 888887 3 2333 3666655
Q ss_pred c----------------ceeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcE-EEEEeCCCCCCCCH
Q psy7769 226 G----------------GSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGS-VVYSTCSLSPIQND 288 (355)
Q Consensus 226 D----------------a~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~-lVYsTCSl~~~ENE 288 (355)
| ...+|+||.+.+- ....|. ......+++..+.++|+|||. ++.++|+. ..++
T Consensus 211 D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~---~~~~~~-----~~~~~~~ll~~~~~~LkpgG~lli~~~~~~--~~~~ 280 (332)
T 2igt_A 211 DAMKFIQREERRGSTYDIILTDPPKFGRGT---HGEVWQ-----LFDHLPLMLDICREILSPKALGLVLTAYSI--RASF 280 (332)
T ss_dssp CHHHHHHHHHHHTCCBSEEEECCCSEEECT---TCCEEE-----HHHHHHHHHHHHHHTBCTTCCEEEEEECCT--TSCH
T ss_pred cHHHHHHHHHhcCCCceEEEECCccccCCc---hHHHHH-----HHHHHHHHHHHHHHhcCcCcEEEEEECCCC--CCCH
Confidence 4 3348888844330 000011 111222889999999999998 44455654 4566
Q ss_pred HHHHHHHHhhhhccCceEE
Q psy7769 289 GVVHMSLKRIWEETGCEIE 307 (355)
Q Consensus 289 ~vV~~~L~~~~~~~~~~~~ 307 (355)
.....++++...+.|..++
T Consensus 281 ~~~~~~l~~a~~~~g~~v~ 299 (332)
T 2igt_A 281 YSMHELMRETMRGAGGVVA 299 (332)
T ss_dssp HHHHHHHHHHTTTSCSEEE
T ss_pred HHHHHHHHHHHHHcCCeEE
Confidence 7777777765445565555
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.8e-10 Score=104.43 Aligned_cols=125 Identities=11% Similarity=-0.015 Sum_probs=87.0
Q ss_pred EEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEe
Q psy7769 149 YCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKV 225 (355)
Q Consensus 149 ~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~ 225 (355)
++|...+.+...++.+.++.+|||+|||+|..+..++...+.++|+++|+++.++ +++++. . .+. .++.+...
T Consensus 37 ~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~--~--~~~~~~v~~~~~ 112 (233)
T 2gpy_A 37 IMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVK--A--LGLESRIELLFG 112 (233)
T ss_dssp CCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHH--H--TTCTTTEEEECS
T ss_pred CcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH--H--cCCCCcEEEEEC
Confidence 4577777888888888899999999999999999999987668999999999999 788877 3 344 35788887
Q ss_pred cceeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 226 GGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 226 Da~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
|+....+.....+ . -++.+.... ......+++.+.++|+|||+++++++.+.
T Consensus 113 d~~~~~~~~~~~~-~--fD~I~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 164 (233)
T 2gpy_A 113 DALQLGEKLELYP-L--FDVLFIDAA---KGQYRRFFDMYSPMVRPGGLILSDNVLFR 164 (233)
T ss_dssp CGGGSHHHHTTSC-C--EEEEEEEGG---GSCHHHHHHHHGGGEEEEEEEEEETTTC-
T ss_pred CHHHHHHhcccCC-C--ccEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEEcCCcC
Confidence 7643111100000 0 011111000 01223789999999999999999976543
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.09 E-value=3e-10 Score=110.20 Aligned_cols=131 Identities=15% Similarity=0.036 Sum_probs=89.5
Q ss_pred HHHHHhhCCCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeec
Q psy7769 156 LLPVLALNIRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYS 232 (355)
Q Consensus 156 ~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDa 232 (355)
...+.++.++++..|||+|||+|..+..+|... ....|+++|+++.++ +++|++ . .+..++.+.+.|+..+..
T Consensus 193 ~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~--~--~g~~~i~~~~~D~~~~~~ 268 (354)
T 3tma_A 193 QALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAAL--A--SGLSWIRFLRADARHLPR 268 (354)
T ss_dssp HHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHH--H--TTCTTCEEEECCGGGGGG
T ss_pred HHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHH--H--cCCCceEEEeCChhhCcc
Confidence 334555678899999999999999999999887 568999999999999 888888 3 344467888877654222
Q ss_pred ccCCCCC-ccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHH
Q psy7769 233 TCSLSPI-QNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLK 296 (355)
Q Consensus 233 PCSgsG~-t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~ 296 (355)
+....++ ..+....+..........++ .+++.+.++|||||++++.|| |+..++.+++
T Consensus 269 ~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~------~~~~~~~~~~ 328 (354)
T 3tma_A 269 FFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL------RPALLKRALP 328 (354)
T ss_dssp TCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES------CHHHHHHHCC
T ss_pred ccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC------CHHHHHHHhh
Confidence 2211110 00000001111123344555 899999999999999999998 4566666554
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.06 E-value=3.9e-10 Score=100.54 Aligned_cols=109 Identities=16% Similarity=0.160 Sum_probs=74.0
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhhHHhhccccccccCcceEEEEE-------------------
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVK------------------- 224 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rll~~~l~r~~~~~g~~~v~~~~------------------- 224 (355)
+++|++|||+|||||++|..+++. .++|+|+|+++...+ .++.+++
T Consensus 23 ~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~~~-------------~~v~~~~~D~~~~~~~~~~~~~~~~~ 87 (191)
T 3dou_A 23 VRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEMEEI-------------AGVRFIRCDIFKETIFDDIDRALREE 87 (191)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCCCC-------------TTCEEEECCTTSSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccccC-------------CCeEEEEccccCHHHHHHHHHHhhcc
Confidence 578999999999999999999987 589999999984220 1122222
Q ss_pred ----ecceeeecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 225 ----VGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 225 ----~Da~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
.|....|+++..+|. |..+.. ....++ .+|..|.++|||||++|..+ ...++...+.+.++..
T Consensus 88 ~~~~~D~Vlsd~~~~~~g~-------~~~d~~-~~~~l~~~~l~~a~~~LkpGG~lv~k~---~~~~~~~~~~~~l~~~ 155 (191)
T 3dou_A 88 GIEKVDDVVSDAMAKVSGI-------PSRDHA-VSYQIGQRVMEIAVRYLRNGGNVLLKQ---FQGDMTNDFIAIWRKN 155 (191)
T ss_dssp TCSSEEEEEECCCCCCCSC-------HHHHHH-HHHHHHHHHHHHHHHHEEEEEEEEEEE---ECSTHHHHHHHHHGGG
T ss_pred cCCcceEEecCCCcCCCCC-------cccCHH-HHHHHHHHHHHHHHHHccCCCEEEEEE---cCCCCHHHHHHHHHHh
Confidence 344445666655552 222222 222344 88999999999999999554 4456666777777654
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.2e-10 Score=106.45 Aligned_cols=132 Identities=17% Similarity=0.080 Sum_probs=84.8
Q ss_pred hhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCC
Q psy7769 161 ALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSP 238 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG 238 (355)
+..+.+|++|||+|||+|..+..+|.....++|+|+|+++.++ +++|++ . .+..++.++.+|+..+ +. .+
T Consensus 114 ~~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~--~--n~l~~~~~~~~d~~~~-~~---~~ 185 (272)
T 3a27_A 114 AFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIK--L--NKLNNVIPILADNRDV-EL---KD 185 (272)
T ss_dssp HTSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHH--H--TTCSSEEEEESCGGGC-CC---TT
T ss_pred HHhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH--H--cCCCCEEEEECChHHc-Cc---cC
Confidence 4457889999999999999999999986567999999999999 888887 3 3556788988887643 11 00
Q ss_pred CccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceEEE
Q psy7769 239 IQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEI 308 (355)
Q Consensus 239 ~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~ 308 (355)
..+. +...+-. ...+++..+++.|+|||.+++ +|.....+.++.....++...+..+..++.
T Consensus 186 -~~D~-Vi~d~p~-----~~~~~l~~~~~~LkpgG~l~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (272)
T 3a27_A 186 -VADR-VIMGYVH-----KTHKFLDKTFEFLKDRGVIHY-HETVAEKIMYERPIERLKFYAEKNGYKLID 247 (272)
T ss_dssp -CEEE-EEECCCS-----SGGGGHHHHHHHEEEEEEEEE-EEEEEGGGTTTHHHHHHHHHHHHTTEEEEE
T ss_pred -CceE-EEECCcc-----cHHHHHHHHHHHcCCCCEEEE-EEcCccccccccHHHHHHHHHHHhCCeeEE
Confidence 0010 1111100 112678899999999988774 555544433333333333322223434443
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.02 E-value=3.4e-10 Score=105.76 Aligned_cols=119 Identities=10% Similarity=0.038 Sum_probs=77.1
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhcccccccc-CcceEEEE
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRPYDTVL-DIHALKLV 223 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r~~~~~-g~~~v~~~ 223 (355)
..+++..+.+++..+++.+|++|||+|||+|..+.++++.. +.++|+++|+++.++ ++++++ . . +..++.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~--~--~~g~~~v~~~ 167 (275)
T 1yb2_A 92 QIISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLS--E--FYDIGNVRTS 167 (275)
T ss_dssp --------------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHH--T--TSCCTTEEEE
T ss_pred cccChhhHHHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHH--h--cCCCCcEEEE
Confidence 34566667788888899999999999999999999999874 448999999999999 888887 3 3 45678888
Q ss_pred EecceeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 224 KVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 224 ~~Da~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
..|+.. +... + . -++.+. ......++|+++.++|||||++++++|+.
T Consensus 168 ~~d~~~---~~~~-~-~--fD~Vi~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 214 (275)
T 1yb2_A 168 RSDIAD---FISD-Q-M--YDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNF 214 (275)
T ss_dssp CSCTTT---CCCS-C-C--EEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred ECchhc---cCcC-C-C--ccEEEE-----cCcCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 888643 1100 0 0 010000 00011167999999999999999999876
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=4.8e-10 Score=102.17 Aligned_cols=121 Identities=10% Similarity=-0.002 Sum_probs=87.4
Q ss_pred EechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc
Q psy7769 150 CMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG 227 (355)
Q Consensus 150 ~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da 227 (355)
-|++++...+..+++.++.+|||+|||+|..+..++... ..|+++|+++.++ +++++. . .+..++.+...|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~--~--~~~~~v~~~~~d~ 78 (239)
T 1xxl_A 5 HHHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQ--E--KGVENVRFQQGTA 78 (239)
T ss_dssp -CHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHH--H--HTCCSEEEEECBT
T ss_pred ccCCCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHH--H--cCCCCeEEEeccc
Confidence 378899999999999999999999999999999988775 5999999999999 777776 3 3445788888887
Q ss_pred eeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 228 SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 228 ~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
..++.+- + + -++.+....+........+|.++.++|||||+++.++...
T Consensus 79 ~~~~~~~---~-~--fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 127 (239)
T 1xxl_A 79 ESLPFPD---D-S--FDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA 127 (239)
T ss_dssp TBCCSCT---T-C--EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred ccCCCCC---C-c--EEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence 5432211 0 0 0111111111122233378999999999999999986654
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=9.8e-10 Score=102.59 Aligned_cols=137 Identities=13% Similarity=-0.006 Sum_probs=90.7
Q ss_pred hhcHHHHHhhCC--CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce
Q psy7769 153 GASLLPVLALNI--RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS 228 (355)
Q Consensus 153 ~aS~l~~~~L~~--~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~ 228 (355)
....++..+++. .++.+|||+|||+|..+..++...+..+|+|+|+|+.++ +++|++ . .+..++.+...|..
T Consensus 94 ~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~--~--~~~~~v~~~~~d~~ 169 (276)
T 2b3t_A 94 DTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQ--H--LAIKNIHILQSDWF 169 (276)
T ss_dssp THHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHH--H--HTCCSEEEECCSTT
T ss_pred hHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH--H--cCCCceEEEEcchh
Confidence 344455444432 578899999999999999999877668999999999999 888887 3 34446777766643
Q ss_pred -----------eeecccCCCCCcc-CCc-cccchHH-----HHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHH
Q psy7769 229 -----------VVYSTCSLSPIQN-DGV-VHMSLKR-----IWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGV 290 (355)
Q Consensus 229 -----------~lDaPCSgsG~t~-~~~-l~~~~~~-----l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~v 290 (355)
..++||.+.+... ... +.+.|.. ...+.....++..+.++|||||.+++.++. .+...
T Consensus 170 ~~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~ 245 (276)
T 2b3t_A 170 SALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW----QQGEA 245 (276)
T ss_dssp GGGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS----SCHHH
T ss_pred hhcccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc----hHHHH
Confidence 3777876543100 000 1111110 001112238999999999999999998654 34556
Q ss_pred HHHHHHh
Q psy7769 291 VHMSLKR 297 (355)
Q Consensus 291 V~~~L~~ 297 (355)
+..++++
T Consensus 246 ~~~~l~~ 252 (276)
T 2b3t_A 246 VRQAFIL 252 (276)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666664
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.00 E-value=7.8e-10 Score=99.93 Aligned_cols=117 Identities=19% Similarity=0.091 Sum_probs=73.4
Q ss_pred hCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeec--ccCCC
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYS--TCSLS 237 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDa--PCSgs 237 (355)
+.+++|++|||+|||+|..+.+++...+.++|+|+|+|+.++ +.++.+ . ..++.++..|+...+. |-.
T Consensus 53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~--~----~~~v~~~~~d~~~~~~~~~~~-- 124 (210)
T 1nt2_A 53 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVR--E----RNNIIPLLFDASKPWKYSGIV-- 124 (210)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHH--H----CSSEEEECSCTTCGGGTTTTC--
T ss_pred cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHh--c----CCCeEEEEcCCCCchhhcccc--
Confidence 356799999999999999999999887668999999999987 444444 1 1356777777643210 100
Q ss_pred CCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe---CCCCCCCCHHHH
Q psy7769 238 PIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST---CSLSPIQNDGVV 291 (355)
Q Consensus 238 G~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT---CSl~~~ENE~vV 291 (355)
+ + -++.+.. +..-...+.+++++.++|||||+++++. |.-.....+.+.
T Consensus 125 ~-~--fD~V~~~--~~~~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~ 176 (210)
T 1nt2_A 125 E-K--VDLIYQD--IAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVF 176 (210)
T ss_dssp C-C--EEEEEEC--CCSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHH
T ss_pred c-c--eeEEEEe--ccChhHHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHHH
Confidence 0 0 0111110 0000011145899999999999999984 322333445554
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=4e-11 Score=118.95 Aligned_cols=156 Identities=13% Similarity=0.027 Sum_probs=100.0
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCC-CcEEEEcCCchhh--HHhhccccccccCcce--EEEEEeccee----------
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYP-DYYCMDGASLLPV--LALNIRPYDTVLDIHA--LKLVKVGGSV---------- 229 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~-g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~--v~~~~~Da~~---------- 229 (355)
++|.+|||+|||+|++++++|..... ++|+++|+++.++ +++|++ . .+..+ ++++++|+..
T Consensus 51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~--~--Ngl~~~~v~v~~~Da~~~l~~~~~~~f 126 (392)
T 3axs_A 51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFK--L--NNIPEDRYEIHGMEANFFLRKEWGFGF 126 (392)
T ss_dssp CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHH--H--TTCCGGGEEEECSCHHHHHHSCCSSCE
T ss_pred CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH--H--hCCCCceEEEEeCCHHHHHHHhhCCCC
Confidence 67999999999999999999986533 6899999999999 999998 3 35544 7888777532
Q ss_pred ----eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhhhccCce
Q psy7769 230 ----VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCE 305 (355)
Q Consensus 230 ----lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~ 305 (355)
+||+|+ ...++..|+++|++|| ++|+||+-........+...+.+ +|..
T Consensus 127 D~V~lDP~g~----------------------~~~~l~~a~~~Lk~gG-ll~~t~t~~~~l~g~~~~~~~rk----Yg~~ 179 (392)
T 3axs_A 127 DYVDLDPFGT----------------------PVPFIESVALSMKRGG-ILSLTATDTAPLSGTYPKTCMRR----YMAR 179 (392)
T ss_dssp EEEEECCSSC----------------------CHHHHHHHHHHEEEEE-EEEEEECCHHHHTTSSHHHHHHH----HSSB
T ss_pred cEEEECCCcC----------------------HHHHHHHHHHHhCCCC-EEEEEecchhhhccccHHHHHHH----hCCc
Confidence 555431 0157899999999998 88999976553322233444444 3422
Q ss_pred EEEecccccc-cccccc-cccccCCCccEEEEecCCCCCCCceEEEEEEEc
Q psy7769 306 IEIKDLSQAL-RPLKSL-FSFANINLSYGHLVQPHLPSNFGPMYFCKFDKI 354 (355)
Q Consensus 306 ~~~~~l~~~~-~~~~~~-~~~~~~~~~~g~~~~P~~~~~~~gfFia~l~r~ 354 (355)
+.++.... .+..-. ........++|..+.|... -..+||+-+|.|.
T Consensus 180 --p~r~~~~~e~~~r~~L~~~~~~a~~~~~~i~P~l~-~~~~~y~Rv~vrv 227 (392)
T 3axs_A 180 --PLRNEFKHEVGIRILIKKVIELAAQYDIAMIPIFA-YSHLHYFKLFFVK 227 (392)
T ss_dssp --CCCSTTHHHHHHHHHHHHHHHHHHTTTEEEEEEEE-EEETTEEEEEEEE
T ss_pred --ccccccccchhHHHHHHHHHHhcccCCCeEEeeEE-EEeCcEEEEEEEE
Confidence 22221000 000000 0001101257778888764 3457999988874
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.3e-09 Score=94.41 Aligned_cols=131 Identities=9% Similarity=-0.074 Sum_probs=89.6
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecc
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYST 233 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaP 233 (355)
.....+.+.++.+|||+|||+|..+..++... ..++|+++|+++.++ +++++. . .+..++.+...|...+..+
T Consensus 28 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~--~--~~~~~~~~~~~d~~~~~~~ 103 (219)
T 3dh0_A 28 KVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVN--K--LGLKNVEVLKSEENKIPLP 103 (219)
T ss_dssp HHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHH--H--HTCTTEEEEECBTTBCSSC
T ss_pred HHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHH--H--cCCCcEEEEecccccCCCC
Confidence 34455678899999999999999999999887 447999999999999 777776 3 3445788988887542211
Q ss_pred cCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCC---------CCHHHHHHHHHh
Q psy7769 234 CSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPI---------QNDGVVHMSLKR 297 (355)
Q Consensus 234 CSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~---------ENE~vV~~~L~~ 297 (355)
- + + -++.+...-+........+|+++.++|||||.++++++..... -+...+...+++
T Consensus 104 ~---~-~--fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 170 (219)
T 3dh0_A 104 D---N-T--VDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILED 170 (219)
T ss_dssp S---S-C--EEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHH
T ss_pred C---C-C--eeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHH
Confidence 1 0 0 0111111111122223378999999999999999998765433 235666777765
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-09 Score=103.79 Aligned_cols=116 Identities=19% Similarity=0.133 Sum_probs=83.6
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEeccee-----------
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSV----------- 229 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~----------- 229 (355)
+++|++|||+|||+|+.++++|... ..+|+|+|+++..+ +++|++ . .+. .++++.++|+..
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~--~--N~v~~~v~~~~~D~~~~~~~~~~D~Vi 197 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIH--L--NKVEDRMSAYNMDNRDFPGENIADRIL 197 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHH--H--TTCTTTEEEECSCTTTCCCCSCEEEEE
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHH--H--cCCCCcEEEEeCcHHHhccccCCCEEE
Confidence 5789999999999999999999864 36899999999999 999998 3 344 458899988764
Q ss_pred eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE-eC--CCCCCCCHHHHHHHHHhhhhccCceE
Q psy7769 230 VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS-TC--SLSPIQNDGVVHMSLKRIWEETGCEI 306 (355)
Q Consensus 230 lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs-TC--Sl~~~ENE~vV~~~L~~~~~~~~~~~ 306 (355)
+++|.++ . +.|..|+++||+||.|.|. .+ .....+..+.++.+.+. .|.++
T Consensus 198 ~~~p~~~-------------~---------~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~----~g~~v 251 (278)
T 3k6r_A 198 MGYVVRT-------------H---------EFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKE----YGYDV 251 (278)
T ss_dssp ECCCSSG-------------G---------GGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHH----TTCEE
T ss_pred ECCCCcH-------------H---------HHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHH----cCCcE
Confidence 3334311 0 4588899999999998653 32 23344455666666654 45555
Q ss_pred EEec
Q psy7769 307 EIKD 310 (355)
Q Consensus 307 ~~~~ 310 (355)
+...
T Consensus 252 ~~~~ 255 (278)
T 3k6r_A 252 EKLN 255 (278)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5433
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=9.1e-10 Score=103.03 Aligned_cols=104 Identities=12% Similarity=0.054 Sum_probs=75.2
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcC--CCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceee-----ecc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLY--PDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVV-----YST 233 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~--~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~l-----DaP 233 (355)
++||.+|||+|||+|..+..+++... ..+|+|+|+|+.++ +++++. . .+. .+++++++|...+ |.-
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~--~--~~~~~~v~~~~~D~~~~~~~~~d~v 143 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHID--A--YKAPTPVDVIEGDIRDIAIENASMV 143 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHH--T--SCCSSCEEEEESCTTTCCCCSEEEE
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHH--h--hccCceEEEeecccccccccccccc
Confidence 57899999999999999999998753 35899999999999 788877 3 222 5789999997542 222
Q ss_pred cCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 234 CSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 234 CSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
.+... ++|-+. ...+.+|+++.+.|||||+++.+.-..
T Consensus 144 ~~~~~------l~~~~~-----~~~~~~l~~i~~~LkpGG~lii~e~~~ 181 (261)
T 4gek_A 144 VLNFT------LQFLEP-----SERQALLDKIYQGLNPGGALVLSEKFS 181 (261)
T ss_dssp EEESC------GGGSCH-----HHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred eeeee------eeecCc-----hhHhHHHHHHHHHcCCCcEEEEEeccC
Confidence 21111 222111 112278999999999999999986544
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.3e-09 Score=98.10 Aligned_cols=136 Identities=13% Similarity=0.065 Sum_probs=84.9
Q ss_pred hCCCCCCeEeeeccc-CcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee---------
Q psy7769 162 LNIRPYDTVLDMCAA-PGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV--------- 229 (355)
Q Consensus 162 L~~~pG~~VLD~CAg-PGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~--------- 229 (355)
..+++|.+|||+||| +|..+..++... .++|+++|+++.++ +++|+. . .+. ++.++..|+..
T Consensus 51 ~~~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~--~--~~~-~v~~~~~d~~~~~~~~~~~f 124 (230)
T 3evz_A 51 TFLRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIE--R--NNS-NVRLVKSNGGIIKGVVEGTF 124 (230)
T ss_dssp TTCCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHH--H--TTC-CCEEEECSSCSSTTTCCSCE
T ss_pred hhcCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHH--H--hCC-CcEEEeCCchhhhhcccCce
Confidence 346789999999999 999999999875 58999999999999 888887 3 243 67788777421
Q ss_pred ----eecccCCCCCccCCc--c-ccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhhhcc
Q psy7769 230 ----VYSTCSLSPIQNDGV--V-HMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEET 302 (355)
Q Consensus 230 ----lDaPCSgsG~t~~~~--l-~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~~~~ 302 (355)
+++|+...+. .+.. . .|... .......+++++.+.++|||||++++.+++-. ++...+...+++ .
T Consensus 125 D~I~~npp~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~~l~~----~ 196 (230)
T 3evz_A 125 DVIFSAPPYYDKPL-GRVLTEREAIGGG-KYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE--KLLNVIKERGIK----L 196 (230)
T ss_dssp EEEEECCCCC----------------CC-SSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH--HHHHHHHHHHHH----T
T ss_pred eEEEECCCCcCCcc-ccccChhhhhccC-ccchHHHHHHHHHHHHHhCCCeEEEEEecccH--hHHHHHHHHHHH----c
Confidence 5555432220 0000 0 00000 00011123889999999999999999765421 333444445543 4
Q ss_pred CceEEEecc
Q psy7769 303 GCEIEIKDL 311 (355)
Q Consensus 303 ~~~~~~~~l 311 (355)
|+.++.+..
T Consensus 197 g~~~~~~~~ 205 (230)
T 3evz_A 197 GYSVKDIKF 205 (230)
T ss_dssp TCEEEEEEE
T ss_pred CCceEEEEe
Confidence 655555443
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.1e-09 Score=94.51 Aligned_cols=126 Identities=15% Similarity=0.096 Sum_probs=82.9
Q ss_pred hCCCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceee-------
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVV------- 230 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~l------- 230 (355)
+.+++|++|||+|||+|..+..++... ..++|+++|+++.++ +++++. . .+. .++.++..|+..+
T Consensus 18 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~--~--~~~~~~v~~~~~d~~~~~~~~~~~ 93 (197)
T 3eey_A 18 MFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLT--D--LNLIDRVTLIKDGHQNMDKYIDCP 93 (197)
T ss_dssp HHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHH--H--TTCGGGEEEECSCGGGGGGTCCSC
T ss_pred hcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH--H--cCCCCCeEEEECCHHHHhhhccCC
Confidence 356789999999999999999999876 347999999999999 788877 3 344 5788888886432
Q ss_pred -ecccCCCCCcc--CCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCC--CHHHHHHHHHh
Q psy7769 231 -YSTCSLSPIQN--DGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQ--NDGVVHMSLKR 297 (355)
Q Consensus 231 -DaPCSgsG~t~--~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~E--NE~vV~~~L~~ 297 (355)
|.-.+..+... +..+...+. ...++++.+.++|||||++++++++-.+.. ....+..+++.
T Consensus 94 fD~v~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~ 159 (197)
T 3eey_A 94 VKAVMFNLGYLPSGDHSISTRPE------TTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKG 159 (197)
T ss_dssp EEEEEEEESBCTTSCTTCBCCHH------HHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTT
T ss_pred ceEEEEcCCcccCcccccccCcc------cHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHh
Confidence 22221111000 000001111 111789999999999999999886654332 23344455543
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-09 Score=104.48 Aligned_cols=100 Identities=11% Similarity=0.037 Sum_probs=75.7
Q ss_pred HhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceee-----ec
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVV-----YS 232 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~l-----Da 232 (355)
.++++++|++|||+|||||+.|..++.....++|+++|+++.++ ++++++ . .|..+++++.+|+..+ |+
T Consensus 116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~--~--~gl~~v~~v~gDa~~l~d~~FDv 191 (298)
T 3fpf_A 116 ALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIE--G--LGVDGVNVITGDETVIDGLEFDV 191 (298)
T ss_dssp HHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHH--H--HTCCSEEEEESCGGGGGGCCCSE
T ss_pred HHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHH--h--cCCCCeEEEECchhhCCCCCcCE
Confidence 35789999999999999999886655444458999999999999 788877 3 3446899999998653 22
Q ss_pred ccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 233 TCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 233 PCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
-.+..+ ....+++++++.+.|||||+|+...
T Consensus 192 V~~~a~----------------~~d~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 192 LMVAAL----------------AEPKRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp EEECTT----------------CSCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred EEECCC----------------ccCHHHHHHHHHHHcCCCcEEEEEc
Confidence 221111 1223388999999999999999876
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.2e-09 Score=97.79 Aligned_cols=109 Identities=14% Similarity=0.069 Sum_probs=75.5
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCc--ceEEEEEecceeeecccCCC
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDI--HALKLVKVGGSVVYSTCSLS 237 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~--~~v~~~~~Da~~lDaPCSgs 237 (355)
+++++.+|||+|||+|..|..+|..++ .++|+++|+++.++ ++++++ . .+. .+++++.+|+..+-+.-. .
T Consensus 53 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~--~--~g~~~~~i~~~~gda~~~l~~~~-~ 127 (221)
T 3dr5_A 53 NGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFR--E--AGYSPSRVRFLLSRPLDVMSRLA-N 127 (221)
T ss_dssp CCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHH--H--TTCCGGGEEEECSCHHHHGGGSC-T
T ss_pred CCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH--H--cCCCcCcEEEEEcCHHHHHHHhc-C
Confidence 455667999999999999999998764 58999999999999 888887 3 344 479999988754211100 0
Q ss_pred CCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 238 PIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 238 G~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
+ +. ++.|... ........++.++++|||||.|++..+.+
T Consensus 128 ~-~f--D~V~~d~---~~~~~~~~l~~~~~~LkpGG~lv~dn~~~ 166 (221)
T 3dr5_A 128 D-SY--QLVFGQV---SPMDLKALVDAAWPLLRRGGALVLADALL 166 (221)
T ss_dssp T-CE--EEEEECC---CTTTHHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred C-Cc--CeEEEcC---cHHHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 0 10 1111000 00112267999999999999999988876
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-09 Score=97.94 Aligned_cols=109 Identities=12% Similarity=0.052 Sum_probs=75.7
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccC
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQND 242 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~ 242 (355)
.++.+|||+|||+|..+..+|+..+...|+|+|+++.++ +++++. . .+..|+.++.+|+..++... ..+ +.+
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~--~--~~~~nv~~~~~d~~~l~~~~-~~~-~~d 110 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVK--D--SEAQNVKLLNIDADTLTDVF-EPG-EVK 110 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHH--H--SCCSSEEEECCCGGGHHHHC-CTT-SCC
T ss_pred CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHH--H--cCCCCEEEEeCCHHHHHhhc-CcC-CcC
Confidence 467899999999999999999987668999999999999 777777 3 35567999999986532100 001 111
Q ss_pred Cc-cc----cchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEe
Q psy7769 243 GV-VH----MSLKRIWEETGCE-IEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 243 ~~-l~----~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsT 279 (355)
.- +. |...+-....-.+ .+|+.+.++|||||.|+++|
T Consensus 111 ~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 111 RVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred EEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 11 11 2211111111123 88999999999999999987
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=98.93 E-value=7.9e-09 Score=92.27 Aligned_cols=115 Identities=11% Similarity=0.004 Sum_probs=77.9
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-----ceEEEEEeccee
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-----HALKLVKVGGSV 229 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-----~~v~~~~~Da~~ 229 (355)
.+...+...++.+|||+|||+|..+..+++......|+++|+++.++ +++++. . .+. .++.+...|...
T Consensus 20 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~--~--~~~~~~~~~~v~~~~~d~~~ 95 (217)
T 3jwh_A 20 GVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLD--R--LRLPRNQWERLQLIQGALTY 95 (217)
T ss_dssp HHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHT--T--CCCCHHHHTTEEEEECCTTS
T ss_pred HHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHH--H--hcCCcccCcceEEEeCCccc
Confidence 44455566788999999999999999999876557999999999999 777776 2 232 268899888754
Q ss_pred eecccCCCCCccCCccccchHHHHhhh--hHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 230 VYSTCSLSPIQNDGVVHMSLKRIWEET--GCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 230 lDaPCSgsG~t~~~~l~~~~~~l~~l~--~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
.+.+-. .-++.+...-+..+. .++.+|+.+.++|||||.++.+.+.
T Consensus 96 ~~~~~~------~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 143 (217)
T 3jwh_A 96 QDKRFH------GYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNI 143 (217)
T ss_dssp CCGGGC------SCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBH
T ss_pred ccccCC------CcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCc
Confidence 332210 011111111111111 1237899999999999988877664
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.5e-09 Score=98.74 Aligned_cols=117 Identities=15% Similarity=0.087 Sum_probs=81.8
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccCCCCCc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLSPIQ 240 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG~t 240 (355)
+.+|.+|||+|||+|..+..++.. ..++|+++|+++.++ ++++++ . .+. +++.++..|...+..+- + +
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~--~--~~~~~~v~~~~~d~~~~~~~~---~-~ 114 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNAR--Q--SGLQNRVTGIVGSMDDLPFRN---E-E 114 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHH--H--TTCTTTEEEEECCTTSCCCCT---T-C
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHH--H--cCCCcCcEEEEcChhhCCCCC---C-C
Confidence 678999999999999999999987 446999999999999 777776 3 344 45899998875432211 0 0
Q ss_pred cCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHH
Q psy7769 241 NDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVH 292 (355)
Q Consensus 241 ~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~ 292 (355)
-++.+...-+... ....+|+.+.++|||||+++.+++++........+.
T Consensus 115 --fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 163 (267)
T 3kkz_A 115 --LDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEIN 163 (267)
T ss_dssp --EEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHH
T ss_pred --EEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHH
Confidence 0111111111122 234789999999999999999998876655544433
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=5.2e-10 Score=103.83 Aligned_cols=112 Identities=13% Similarity=0.001 Sum_probs=79.7
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCcc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQN 241 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~ 241 (355)
+.++.+|||+|||+|..++.+|...+.++|+++|+++.++ +++|++ . .+..++.++++|+..+...-...+
T Consensus 78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~--~--~~l~~v~~~~~d~~~~~~~~~~~~--- 150 (249)
T 3g89_A 78 WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIE--V--LGLKGARALWGRAEVLAREAGHRE--- 150 (249)
T ss_dssp CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHH--H--HTCSSEEEEECCHHHHTTSTTTTT---
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH--H--hCCCceEEEECcHHHhhcccccCC---
Confidence 4678999999999999999999887678999999999999 888887 3 456679999988754321100000
Q ss_pred CCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCC
Q psy7769 242 DGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQ 286 (355)
Q Consensus 242 ~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~E 286 (355)
.-++.++ .....+..+++.+.++|||||++++..+....+|
T Consensus 151 ~fD~I~s----~a~~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e 191 (249)
T 3g89_A 151 AYARAVA----RAVAPLCVLSELLLPFLEVGGAAVAMKGPRVEEE 191 (249)
T ss_dssp CEEEEEE----ESSCCHHHHHHHHGGGEEEEEEEEEEECSCCHHH
T ss_pred CceEEEE----CCcCCHHHHHHHHHHHcCCCeEEEEEeCCCcHHH
Confidence 0011111 0112334789999999999999999888754433
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.92 E-value=3.7e-09 Score=96.88 Aligned_cols=124 Identities=14% Similarity=0.102 Sum_probs=83.2
Q ss_pred echhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEec
Q psy7769 151 MDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVG 226 (355)
Q Consensus 151 QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~D 226 (355)
+.....+...++...++.+|||+|||+|+.+..++..++ .++|+++|+++.++ ++++++ . .+. ++++++.+|
T Consensus 55 ~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~--~--~g~~~~i~~~~gd 130 (237)
T 3c3y_A 55 SPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIR--K--AGVEHKINFIESD 130 (237)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHH--H--TTCGGGEEEEESC
T ss_pred CHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH--H--cCCCCcEEEEEcC
Confidence 344455555556666778999999999999999999875 58999999999999 888887 3 344 468898888
Q ss_pred ceeeeccc--CCCCCccCCcccc-chHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 227 GSVVYSTC--SLSPIQNDGVVHM-SLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 227 a~~lDaPC--SgsG~t~~~~l~~-~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
+..+-+.. .+.. ...-++.+ ... .......++.+.++|+|||.|++.+|.+.
T Consensus 131 a~~~l~~l~~~~~~-~~~fD~I~~d~~----~~~~~~~l~~~~~~L~pGG~lv~d~~~~~ 185 (237)
T 3c3y_A 131 AMLALDNLLQGQES-EGSYDFGFVDAD----KPNYIKYHERLMKLVKVGGIVAYDNTLWG 185 (237)
T ss_dssp HHHHHHHHHHSTTC-TTCEEEEEECSC----GGGHHHHHHHHHHHEEEEEEEEEECTTGG
T ss_pred HHHHHHHHHhccCC-CCCcCEEEECCc----hHHHHHHHHHHHHhcCCCeEEEEecCCcC
Confidence 75421110 0000 00011111 000 01122789999999999999999988553
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.92 E-value=5.9e-09 Score=93.15 Aligned_cols=117 Identities=9% Similarity=-0.041 Sum_probs=77.4
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccC
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCS 235 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCS 235 (355)
....+.+++|.+|||+|||+|..+..++...+.++|+++|+++.++ +.++.++.....+..++.++..|+..++.+.
T Consensus 19 ~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~- 97 (218)
T 3mq2_A 19 EFEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLS- 97 (218)
T ss_dssp HHHHHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCC-
T ss_pred HHHHhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCC-
Confidence 3455567899999999999999999999986568999999999988 3333221000034467899999986644332
Q ss_pred CCCCccCCc---cccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 236 LSPIQNDGV---VHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 236 gsG~t~~~~---l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
+ + +.- +.|.............+|+++.++|||||+++++.
T Consensus 98 --~-~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 140 (218)
T 3mq2_A 98 --G-V-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVAL 140 (218)
T ss_dssp --C-E-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred --C-C-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEe
Confidence 1 1 111 11222100111111288999999999999999854
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.8e-09 Score=98.39 Aligned_cols=120 Identities=8% Similarity=0.004 Sum_probs=83.0
Q ss_pred echhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecc
Q psy7769 151 MDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGG 227 (355)
Q Consensus 151 QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da 227 (355)
+.....+...++...++.+|||+|||+|..+..++.....++|+++|+++.++ ++++++ . .+. .++.++.+|+
T Consensus 56 ~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~--~--~~~~~~v~~~~~d~ 131 (232)
T 3ntv_A 56 DRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLA--T--YHFENQVRIIEGNA 131 (232)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHH--H--TTCTTTEEEEESCG
T ss_pred CHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH--H--cCCCCcEEEEECCH
Confidence 44555666666677788999999999999999999865568999999999999 888887 3 344 4789999887
Q ss_pred eeeec-ccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 228 SVVYS-TCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 228 ~~lDa-PCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
....+ .. .+ ..+. +..... ......+++.+.++|||||.|++..+-+
T Consensus 132 ~~~~~~~~--~~-~fD~-V~~~~~----~~~~~~~l~~~~~~LkpgG~lv~d~~~~ 179 (232)
T 3ntv_A 132 LEQFENVN--DK-VYDM-IFIDAA----KAQSKKFFEIYTPLLKHQGLVITDNVLY 179 (232)
T ss_dssp GGCHHHHT--TS-CEEE-EEEETT----SSSHHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred HHHHHhhc--cC-CccE-EEEcCc----HHHHHHHHHHHHHhcCCCeEEEEeeCCc
Confidence 54322 11 00 1111 100000 1112278999999999999999855443
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.92 E-value=2e-09 Score=98.86 Aligned_cols=121 Identities=10% Similarity=-0.032 Sum_probs=82.0
Q ss_pred EEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEec
Q psy7769 149 YCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVG 226 (355)
Q Consensus 149 ~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~D 226 (355)
+.|.......+..+.+.++.+|||+|||+|..+..++... ++|+++|+++.++ +++++. . .+..++.+..+|
T Consensus 20 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~--~--~~~~~v~~~~~d 93 (260)
T 1vl5_A 20 HAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIE--G--NGHQQVEYVQGD 93 (260)
T ss_dssp ---CCCHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHH--H--TTCCSEEEEECC
T ss_pred ccCHHHHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHH--h--cCCCceEEEEec
Confidence 4455556666777788899999999999999999888775 5999999999999 777766 3 344578898888
Q ss_pred ceeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 227 GSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 227 a~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
+..++.|- + + -++.+....+........+|.++.++|||||+++.++..
T Consensus 94 ~~~l~~~~---~-~--fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~ 142 (260)
T 1vl5_A 94 AEQMPFTD---E-R--FHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS 142 (260)
T ss_dssp C-CCCSCT---T-C--EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred HHhCCCCC---C-C--EEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcC
Confidence 76532221 0 0 011111111112223337899999999999999997543
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=7.6e-10 Score=100.66 Aligned_cols=121 Identities=10% Similarity=-0.019 Sum_probs=81.2
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccC
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQND 242 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~ 242 (355)
.++.+|||+|||+|..+..+|+..+...|+|+|+++.++ +++++. . .+..|+.++.+|+..+-+.+-..| +.+
T Consensus 33 ~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~--~--~~l~nv~~~~~Da~~~l~~~~~~~-~~d 107 (218)
T 3dxy_A 33 REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAH--E--EGLSNLRVMCHDAVEVLHKMIPDN-SLR 107 (218)
T ss_dssp SCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHH--H--TTCSSEEEECSCHHHHHHHHSCTT-CEE
T ss_pred CCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHH--H--hCCCcEEEEECCHHHHHHHHcCCC-Chh
Confidence 468899999999999999999987668899999999999 777776 3 456789999999765211000011 111
Q ss_pred Cc-cc----cchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHH
Q psy7769 243 GV-VH----MSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLK 296 (355)
Q Consensus 243 ~~-l~----~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~ 296 (355)
.- +. |...+-....-.+ .+++.+.+.|||||+++++|- ++.-.+++++
T Consensus 108 ~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td------~~~~~~~~~~ 161 (218)
T 3dxy_A 108 MVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD------WEPYAEHMLE 161 (218)
T ss_dssp EEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES------CHHHHHHHHH
T ss_pred eEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC------CHHHHHHHHH
Confidence 11 11 2222111111123 689999999999999999884 3444555444
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.91 E-value=2.3e-09 Score=96.22 Aligned_cols=124 Identities=10% Similarity=0.024 Sum_probs=82.1
Q ss_pred echhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEec
Q psy7769 151 MDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVG 226 (355)
Q Consensus 151 QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~D 226 (355)
+.....+...++...++.+|||+|||+|..|.+++..++ .++|+++|+++.++ ++++++ . .+. +++.++.+|
T Consensus 49 ~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~--~--~~~~~~v~~~~~d 124 (225)
T 3tr6_A 49 APEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWE--K--AGLSDKIGLRLSP 124 (225)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHH--H--TTCTTTEEEEESC
T ss_pred CHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHH--H--CCCCCceEEEeCC
Confidence 344455666666667888999999999999999998765 58999999999999 888887 3 344 358898888
Q ss_pred ceeeecccCCCCCccCCcccc-chHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 227 GSVVYSTCSLSPIQNDGVVHM-SLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 227 a~~lDaPCSgsG~t~~~~l~~-~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
+...-+.....+....-++.+ ... ......+++.+.++|||||.|++..+.+
T Consensus 125 ~~~~~~~~~~~~~~~~fD~v~~~~~----~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 177 (225)
T 3tr6_A 125 AKDTLAELIHAGQAWQYDLIYIDAD----KANTDLYYEESLKLLREGGLIAVDNVLR 177 (225)
T ss_dssp HHHHHHHHHTTTCTTCEEEEEECSC----GGGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred HHHHHHHhhhccCCCCccEEEECCC----HHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 743111100000000011111 110 1112278999999999999999876654
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.91 E-value=1e-09 Score=97.84 Aligned_cols=119 Identities=8% Similarity=-0.078 Sum_probs=79.9
Q ss_pred chhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecc
Q psy7769 152 DGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGG 227 (355)
Q Consensus 152 D~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da 227 (355)
.....+...++...++.+|||+|||+|..|..++.... .++|+++|+++.++ ++++++ . .+. .++.++.+|+
T Consensus 42 ~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~--~--~~~~~~v~~~~~d~ 117 (210)
T 3c3p_A 42 RQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLH--D--NGLIDRVELQVGDP 117 (210)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHH--H--HSGGGGEEEEESCH
T ss_pred HHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH--H--CCCCceEEEEEecH
Confidence 33444544445555678999999999999999998765 58999999999999 777877 3 233 4588888887
Q ss_pred eeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 228 SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 228 ~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
...-+.. .. -++.+... .......+++.+.++|||||.+++.++.+.
T Consensus 118 ~~~~~~~-----~~-fD~v~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 164 (210)
T 3c3p_A 118 LGIAAGQ-----RD-IDILFMDC---DVFNGADVLERMNRCLAKNALLIAVNALRR 164 (210)
T ss_dssp HHHHTTC-----CS-EEEEEEET---TTSCHHHHHHHHGGGEEEEEEEEEESSSSC
T ss_pred HHHhccC-----CC-CCEEEEcC---ChhhhHHHHHHHHHhcCCCeEEEEECcccc
Confidence 4311111 00 11111000 001222789999999999999999877653
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.3e-09 Score=97.86 Aligned_cols=113 Identities=15% Similarity=0.045 Sum_probs=78.4
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcc-eEEEEEecceeeecccCCCCC
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIH-ALKLVKVGGSVVYSTCSLSPI 239 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~-~v~~~~~Da~~lDaPCSgsG~ 239 (355)
.+.++.+|||+|||+|..+..+++..+ ++|+++|+++.++ +++++. . .+.. ++.++..|+..+..+- +
T Consensus 43 ~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~--~--~~~~~~~~~~~~d~~~~~~~~---~- 113 (257)
T 3f4k_A 43 ELTDDAKIADIGCGTGGQTLFLADYVK-GQITGIDLFPDFIEIFNENAV--K--ANCADRVKGITGSMDNLPFQN---E- 113 (257)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHCC-SEEEEEESCHHHHHHHHHHHH--H--TTCTTTEEEEECCTTSCSSCT---T-
T ss_pred cCCCCCeEEEeCCCCCHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHH--H--cCCCCceEEEECChhhCCCCC---C-
Confidence 567899999999999999999998874 4999999999999 777776 3 3443 4889998875432110 0
Q ss_pred ccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCC
Q psy7769 240 QNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQN 287 (355)
Q Consensus 240 t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~EN 287 (355)
+ -++.+...-+... ....+|+++.++|||||+++++++++.....
T Consensus 114 ~--fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~ 158 (257)
T 3f4k_A 114 E--LDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEASWFTSER 158 (257)
T ss_dssp C--EEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEEEESSSCC
T ss_pred C--EEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEeeccCCCC
Confidence 0 0111100001111 2237899999999999999999987555443
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=5.5e-09 Score=99.06 Aligned_cols=116 Identities=16% Similarity=0.061 Sum_probs=80.8
Q ss_pred HHHHhhC-CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeec
Q psy7769 157 LPVLALN-IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYS 232 (355)
Q Consensus 157 l~~~~L~-~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDa 232 (355)
.+...+. +++|.+|||+|||+|..+..+++.. ..+|+++|+++.++ +++++. . .+. .++.+...|+..+..
T Consensus 107 ~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~--~--~~~~~~v~~~~~d~~~~~~ 181 (312)
T 3vc1_A 107 FLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRAR--E--LRIDDHVRSRVCNMLDTPF 181 (312)
T ss_dssp HHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHH--H--TTCTTTEEEEECCTTSCCC
T ss_pred HHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHH--H--cCCCCceEEEECChhcCCC
Confidence 3445555 7889999999999999999999875 37899999999999 777777 3 344 368999998754321
Q ss_pred ccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCC
Q psy7769 233 TCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSP 284 (355)
Q Consensus 233 PCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~ 284 (355)
+- + . -++.+...-+... ....+|+.+.++|||||++++++.....
T Consensus 182 ~~---~-~--fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 226 (312)
T 3vc1_A 182 DK---G-A--VTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNP 226 (312)
T ss_dssp CT---T-C--EEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEECT
T ss_pred CC---C-C--EeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEEccccc
Confidence 10 0 0 1111111111122 2338999999999999999998865544
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.89 E-value=9.7e-09 Score=100.50 Aligned_cols=131 Identities=4% Similarity=-0.034 Sum_probs=86.8
Q ss_pred EechhcHHHHHhh-CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEec
Q psy7769 150 CMDGASLLPVLAL-NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVG 226 (355)
Q Consensus 150 ~QD~aS~l~~~~L-~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~D 226 (355)
.|+.++.+..... ...+|.+|||+| |+|..+..++.....++|+++|+++.++ +++|++ . .|..++.++.+|
T Consensus 155 ~~~~~~~~l~~~~~~~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~--~--~g~~~v~~~~~D 229 (373)
T 2qm3_A 155 PETTVARVILMHTRGDLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAAN--E--IGYEDIEIFTFD 229 (373)
T ss_dssp HHHHHHHHHHHHHTTCSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHH--H--HTCCCEEEECCC
T ss_pred HHHHHHHHHHHhhcCCCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH--H--cCCCCEEEEECh
Confidence 3555555554322 345789999999 9999999998775457999999999999 888887 3 344478888888
Q ss_pred cee-eecccCCCCCccCCccc---cchHHHHhhhhHHHHHHHHHhhccCCc-EEEEEeCCCCCCCCH---HHHHHHHH
Q psy7769 227 GSV-VYSTCSLSPIQNDGVVH---MSLKRIWEETGCEIEIKHALKLVKVGG-SVVYSTCSLSPIQND---GVVHMSLK 296 (355)
Q Consensus 227 a~~-lDaPCSgsG~t~~~~l~---~~~~~l~~l~~lQ~lL~~A~~~LkpGG-~lVYsTCSl~~~ENE---~vV~~~L~ 296 (355)
+.. +..... + ..+.-+. +... .+..+|..+.+.||||| .++|++|+ ..++. ..+..++.
T Consensus 230 ~~~~l~~~~~--~-~fD~Vi~~~p~~~~------~~~~~l~~~~~~LkpgG~~~~~~~~~--~~~~~~~~~~~~~~l~ 296 (373)
T 2qm3_A 230 LRKPLPDYAL--H-KFDTFITDPPETLE------AIRAFVGRGIATLKGPRCAGYFGITR--RESSLDKWREIQKLLL 296 (373)
T ss_dssp TTSCCCTTTS--S-CBSEEEECCCSSHH------HHHHHHHHHHHTBCSTTCEEEEEECT--TTCCHHHHHHHHHHHH
T ss_pred hhhhchhhcc--C-CccEEEECCCCchH------HHHHHHHHHHHHcccCCeEEEEEEec--CcCCHHHHHHHHHHHH
Confidence 754 211000 0 0010000 1111 12488999999999999 55898887 34555 56666665
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=98.89 E-value=6.3e-09 Score=89.88 Aligned_cols=124 Identities=13% Similarity=0.088 Sum_probs=86.8
Q ss_pred hhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcce--EEEEEecce
Q psy7769 153 GASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHA--LKLVKVGGS 228 (355)
Q Consensus 153 ~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~--v~~~~~Da~ 228 (355)
..+......+.+.++.+|||+|||+|..+..++.. ...|+++|+++.++ +++++. . .+..+ +.+...|..
T Consensus 39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~--~--~~~~~~~~~~~~~d~~ 112 (194)
T 1dus_A 39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIK--L--NNLDNYDIRVVHSDLY 112 (194)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHH--H--TTCTTSCEEEEECSTT
T ss_pred hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHH--H--cCCCccceEEEECchh
Confidence 45566667777889999999999999999998877 47999999999999 777776 3 34454 888888864
Q ss_pred e------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 229 V------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 229 ~------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
. .|.-.+... +++... ....+++.+.++|+|||.++.++++. ++...+...+++
T Consensus 113 ~~~~~~~~D~v~~~~~------~~~~~~------~~~~~l~~~~~~L~~gG~l~~~~~~~---~~~~~~~~~l~~ 172 (194)
T 1dus_A 113 ENVKDRKYNKIITNPP------IRAGKE------VLHRIIEEGKELLKDNGEIWVVIQTK---QGAKSLAKYMKD 172 (194)
T ss_dssp TTCTTSCEEEEEECCC------STTCHH------HHHHHHHHHHHHEEEEEEEEEEEEST---HHHHHHHHHHHH
T ss_pred cccccCCceEEEECCC------cccchh------HHHHHHHHHHHHcCCCCEEEEEECCC---CChHHHHHHHHH
Confidence 3 222221110 111111 12278999999999999999998876 233334444544
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=4.6e-09 Score=90.63 Aligned_cols=132 Identities=13% Similarity=0.120 Sum_probs=91.3
Q ss_pred echhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecc
Q psy7769 151 MDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGG 227 (355)
Q Consensus 151 QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da 227 (355)
++.-..+....+.+.++.+|||+|||+|..+..++... .+|+++|+++.++ +++++. . .+. .++.+...|.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~--~--~~~~~~~~~~~~d~ 91 (192)
T 1l3i_A 18 AMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQ--R--HGLGDNVTLMEGDA 91 (192)
T ss_dssp CHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHH--H--TTCCTTEEEEESCH
T ss_pred hHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHH--H--cCCCcceEEEecCH
Confidence 34444555666788899999999999999999998876 7999999999999 777776 3 344 5678888776
Q ss_pred ee-------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhhh
Q psy7769 228 SV-------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWE 300 (355)
Q Consensus 228 ~~-------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~~ 300 (355)
.. .|.-.+... + ..+..+++.+.++|+|||.+++++++. ++...+..++++
T Consensus 92 ~~~~~~~~~~D~v~~~~~-------------~---~~~~~~l~~~~~~l~~gG~l~~~~~~~---~~~~~~~~~l~~--- 149 (192)
T 1l3i_A 92 PEALCKIPDIDIAVVGGS-------------G---GELQEILRIIKDKLKPGGRIIVTAILL---ETKFEAMECLRD--- 149 (192)
T ss_dssp HHHHTTSCCEEEEEESCC-------------T---TCHHHHHHHHHHTEEEEEEEEEEECBH---HHHHHHHHHHHH---
T ss_pred HHhcccCCCCCEEEECCc-------------h---HHHHHHHHHHHHhcCCCcEEEEEecCc---chHHHHHHHHHH---
Confidence 43 222211100 0 112378999999999999999999875 344445555554
Q ss_pred ccCceEEEecc
Q psy7769 301 ETGCEIEIKDL 311 (355)
Q Consensus 301 ~~~~~~~~~~l 311 (355)
.|++++...+
T Consensus 150 -~g~~~~~~~~ 159 (192)
T 1l3i_A 150 -LGFDVNITEL 159 (192)
T ss_dssp -TTCCCEEEEE
T ss_pred -CCCceEEEEE
Confidence 3545554443
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.9e-09 Score=97.46 Aligned_cols=107 Identities=19% Similarity=0.023 Sum_probs=78.9
Q ss_pred hhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhccccccccCcce-EEEEEecce
Q psy7769 153 GASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRPYDTVLDIHA-LKLVKVGGS 228 (355)
Q Consensus 153 ~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~-v~~~~~Da~ 228 (355)
..+......+++.+|++|||+|||+|..+.+++..+ +.++|+++|+++.++ ++++++ . .+..+ +.+...|+.
T Consensus 80 ~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~--~--~~~~~~v~~~~~d~~ 155 (255)
T 3mb5_A 80 KDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIK--W--AGFDDRVTIKLKDIY 155 (255)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHH--H--HTCTTTEEEECSCGG
T ss_pred hHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHH--H--cCCCCceEEEECchh
Confidence 344566777889999999999999999999999884 458999999999999 888887 3 34444 888888765
Q ss_pred e------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 229 V------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 229 ~------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
. +|.-.+. + + ....++.++.++|+|||+++..+-+
T Consensus 156 ~~~~~~~~D~v~~~----------~-~-------~~~~~l~~~~~~L~~gG~l~~~~~~ 196 (255)
T 3mb5_A 156 EGIEEENVDHVILD----------L-P-------QPERVVEHAAKALKPGGFFVAYTPC 196 (255)
T ss_dssp GCCCCCSEEEEEEC----------S-S-------CGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred hccCCCCcCEEEEC----------C-C-------CHHHHHHHHHHHcCCCCEEEEEECC
Confidence 3 2222110 0 0 0115689999999999999976533
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-09 Score=99.97 Aligned_cols=112 Identities=12% Similarity=0.003 Sum_probs=78.2
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCc
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQ 240 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t 240 (355)
.+.++.+|||+|||+|..+..++.....++|+++|+++.++ ++++++ . .+..++.++++|+..+..+-.-.+ .
T Consensus 67 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~--~--~~~~~v~~~~~d~~~~~~~~~~~~-~ 141 (240)
T 1xdz_A 67 DFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSE--A--LQLENTTFCHDRAETFGQRKDVRE-S 141 (240)
T ss_dssp CGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHH--H--HTCSSEEEEESCHHHHTTCTTTTT-C
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH--H--cCCCCEEEEeccHHHhcccccccC-C
Confidence 44578899999999999999999865568999999999999 788877 3 355578999988754322100000 0
Q ss_pred cCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCC
Q psy7769 241 NDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPI 285 (355)
Q Consensus 241 ~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ 285 (355)
-++.+... ...++.+++.+.++|||||++++..+....+
T Consensus 142 --fD~V~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~ 180 (240)
T 1xdz_A 142 --YDIVTARA----VARLSVLSELCLPLVKKNGLFVALKAASAEE 180 (240)
T ss_dssp --EEEEEEEC----CSCHHHHHHHHGGGEEEEEEEEEEECC-CHH
T ss_pred --ccEEEEec----cCCHHHHHHHHHHhcCCCCEEEEEeCCCchH
Confidence 11111100 1234488999999999999999987766443
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.87 E-value=4.5e-09 Score=94.07 Aligned_cols=110 Identities=11% Similarity=0.025 Sum_probs=75.6
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccC
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQND 242 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~ 242 (355)
.++.+|||+|||+|..+..++...+...|+|+|+++.++ +++++. . .+..++.++.+|+..+..... .+ +.+
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~--~--~~~~~v~~~~~d~~~~~~~~~-~~-~~D 113 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVL--E--VGVPNIKLLWVDGSDLTDYFE-DG-EID 113 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHH--H--HCCSSEEEEECCSSCGGGTSC-TT-CCS
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHH--H--cCCCCEEEEeCCHHHHHhhcC-CC-CCC
Confidence 568899999999999999999987668999999999999 778877 3 345678999999865321010 01 111
Q ss_pred Cc-----cccchHHHHhh-hhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 243 GV-----VHMSLKRIWEE-TGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 243 ~~-----l~~~~~~l~~l-~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
.- ..|...+.... .....+|..+.++|||||.+++.|-
T Consensus 114 ~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (214)
T 1yzh_A 114 RLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD 157 (214)
T ss_dssp EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred EEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence 11 01211111111 1122889999999999999999763
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=98.87 E-value=4.4e-09 Score=95.89 Aligned_cols=115 Identities=12% Similarity=0.061 Sum_probs=79.9
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecc
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYST 233 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaP 233 (355)
.....+.+.+|.+|||+|||+|..+..++... ...|+++|+++.++ +++++. . .+. .++.+...|+..+..
T Consensus 27 ~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~--~--~~~~~~v~~~~~d~~~~~~- 100 (256)
T 1nkv_A 27 TLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAE--E--LGVSERVHFIHNDAAGYVA- 100 (256)
T ss_dssp HHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHH--H--TTCTTTEEEEESCCTTCCC-
T ss_pred HHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHH--h--cCCCcceEEEECChHhCCc-
Confidence 44455678899999999999999999999876 46899999999999 777776 2 244 468888888754211
Q ss_pred cCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 234 CSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 234 CSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
.+ +. ++.+....+........+|+++.++|||||+++.++....
T Consensus 101 ---~~-~f--D~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~ 144 (256)
T 1nkv_A 101 ---NE-KC--DVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWR 144 (256)
T ss_dssp ---SS-CE--EEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEET
T ss_pred ---CC-CC--CEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCccc
Confidence 00 10 1111111111222234789999999999999999876543
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=6.5e-09 Score=97.86 Aligned_cols=116 Identities=16% Similarity=0.013 Sum_probs=81.2
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceee---
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVV--- 230 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~l--- 230 (355)
..+..+++++|.+|||+|||+|..+..+++..+ .+|+++|+|+.++ +++++. . .+. .++.+...|...+
T Consensus 63 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~--~--~~~~~~v~~~~~d~~~~~~~ 137 (302)
T 3hem_A 63 LALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFD--E--VDSPRRKEVRIQGWEEFDEP 137 (302)
T ss_dssp HHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHH--H--SCCSSCEEEEECCGGGCCCC
T ss_pred HHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHH--h--cCCCCceEEEECCHHHcCCC
Confidence 345566788999999999999999999998754 7999999999999 777776 3 344 3688998887543
Q ss_pred -ecccCCCCCccCCccccchHH--HHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 231 -YSTCSLSPIQNDGVVHMSLKR--IWEETGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 231 -DaPCSgsG~t~~~~l~~~~~~--l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
|...+... +.+-++. ......+..+|+++.++|||||+++..+.+..
T Consensus 138 fD~v~~~~~------~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 187 (302)
T 3hem_A 138 VDRIVSLGA------FEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP 187 (302)
T ss_dssp CSEEEEESC------GGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred ccEEEEcch------HHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence 22221110 1111000 00001223789999999999999999988764
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.86 E-value=5.3e-09 Score=102.32 Aligned_cols=86 Identities=16% Similarity=0.215 Sum_probs=66.2
Q ss_pred CCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc-----------------
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG----------------- 227 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da----------------- 227 (355)
|.+|||+|||+|..|+.+|... .+|+|+|+++.++ +++|++ . .+..+++++.+|+
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~--~--ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~ 287 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIA--A--NHIDNVQIIRMAAEEFTQAMNGVREFNRLQ 287 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHH--H--TTCCSEEEECCCSHHHHHHHSSCCCCTTGG
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHH--H--cCCCceEEEECCHHHHHHHHhhcccccccc
Confidence 6799999999999999988743 6899999999999 888887 3 3556777776554
Q ss_pred -----------eeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 228 -----------SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 228 -----------~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
..+|||..|. ...+++.|++||+|||.+|+.
T Consensus 288 ~~~~~~~~fD~Vv~dPPr~g~------------------------~~~~~~~l~~~g~ivyvsc~p 329 (369)
T 3bt7_A 288 GIDLKSYQCETIFVDPPRSGL------------------------DSETEKMVQAYPRILYISCNP 329 (369)
T ss_dssp GSCGGGCCEEEEEECCCTTCC------------------------CHHHHHHHTTSSEEEEEESCH
T ss_pred ccccccCCCCEEEECcCcccc------------------------HHHHHHHHhCCCEEEEEECCH
Confidence 2366665322 335566677999999999964
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.85 E-value=3e-09 Score=94.41 Aligned_cols=109 Identities=13% Similarity=0.076 Sum_probs=81.4
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEe
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKV 225 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~ 225 (355)
++.+..........+.++++++|||+|||+|..+..++... ++|+++|+++.++ +++++. . .+..++.+...
T Consensus 59 ~~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~--~~v~~vD~~~~~~~~a~~~~~--~--~~~~~v~~~~~ 132 (210)
T 3lbf_A 59 TISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLV--QHVCSVERIKGLQWQARRRLK--N--LDLHNVSTRHG 132 (210)
T ss_dssp EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHH--H--TTCCSEEEEES
T ss_pred EeCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEecCHHHHHHHHHHHH--H--cCCCceEEEEC
Confidence 45566556666778889999999999999999999999883 8999999999999 888887 3 35567899988
Q ss_pred ccee-------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 226 GGSV-------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 226 Da~~-------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
|+.. .|.-.+..+ +. .+...+.++|||||+++.+...
T Consensus 133 d~~~~~~~~~~~D~i~~~~~------~~-------------~~~~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 133 DGWQGWQARAPFDAIIVTAA------PP-------------EIPTALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CGGGCCGGGCCEEEEEESSB------CS-------------SCCTHHHHTEEEEEEEEEEECS
T ss_pred CcccCCccCCCccEEEEccc------hh-------------hhhHHHHHhcccCcEEEEEEcC
Confidence 8754 222221111 00 1123578899999999998876
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=98.85 E-value=2e-08 Score=89.66 Aligned_cols=115 Identities=10% Similarity=-0.039 Sum_probs=76.7
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-----ceEEEEEeccee
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-----HALKLVKVGGSV 229 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-----~~v~~~~~Da~~ 229 (355)
.+...+...++.+|||+|||+|..+..++......+|+++|+++.++ +++++. . .+. .++.+...|...
T Consensus 20 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~--~--~~~~~~~~~~v~~~~~d~~~ 95 (219)
T 3jwg_A 20 TVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLK--I--DRLPEMQRKRISLFQSSLVY 95 (219)
T ss_dssp HHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHT--G--GGSCHHHHTTEEEEECCSSS
T ss_pred HHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHH--h--hccccccCcceEEEeCcccc
Confidence 34455556788999999999999999998876557999999999999 777766 2 122 268899888744
Q ss_pred eecccCCCCCccCCccccchHHHHhhh--hHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 230 VYSTCSLSPIQNDGVVHMSLKRIWEET--GCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 230 lDaPCSgsG~t~~~~l~~~~~~l~~l~--~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
.+.+-. .-++.+...-+..+. .+..+|+++.++|||||.++.+.+.
T Consensus 96 ~~~~~~------~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 143 (219)
T 3jwg_A 96 RDKRFS------GYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNK 143 (219)
T ss_dssp CCGGGT------TCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBG
T ss_pred cccccC------CCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccch
Confidence 322210 011111111111122 1237899999999999977776654
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.84 E-value=2.3e-09 Score=98.44 Aligned_cols=125 Identities=11% Similarity=0.015 Sum_probs=78.4
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcccccc--c--cCcceEEEEEeccee-eecccCC
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDT--V--LDIHALKLVKVGGSV-VYSTCSL 236 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~--~--~g~~~v~~~~~Da~~-lDaPCSg 236 (355)
+.++.+|||+|||+|+.+..+|.....+.|+++|+++.++ ++++++.... . .+..|+.++.+|+.. ++ .+-.
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~-~~~~ 125 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLP-NFFE 125 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGG-GTSC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHH-Hhcc
Confidence 4578899999999999999999987667899999999999 7776652100 0 044678999999864 22 1100
Q ss_pred CCCccCCc-cc----cchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHH
Q psy7769 237 SPIQNDGV-VH----MSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLK 296 (355)
Q Consensus 237 sG~t~~~~-l~----~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~ 296 (355)
.| +.+.. +. |...+.......+ .++..+.++|+|||.|+++| .++...+++.+
T Consensus 126 ~~-~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t------d~~~~~~~~~~ 184 (246)
T 2vdv_E 126 KG-QLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT------DVKDLHEWMVK 184 (246)
T ss_dssp TT-CEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE------SCHHHHHHHHH
T ss_pred cc-ccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe------ccHHHHHHHHH
Confidence 11 11111 11 2111111111122 78999999999999999966 33454554443
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=3.1e-09 Score=100.56 Aligned_cols=120 Identities=12% Similarity=-0.022 Sum_probs=80.9
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcc-eEEEEEecc-------------
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIH-ALKLVKVGG------------- 227 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~-~v~~~~~Da------------- 227 (355)
..++.+|||+|||+|..+..++.. +..+|+|+|+|+.++ +++|++ . .+.. ++.++..|.
T Consensus 121 ~~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~--~--~~l~~~v~~~~~D~~~~~~~~f~~~D~ 195 (284)
T 1nv8_A 121 KYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAE--R--HGVSDRFFVRKGEFLEPFKEKFASIEM 195 (284)
T ss_dssp HHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHH--H--TTCTTSEEEEESSTTGGGGGGTTTCCE
T ss_pred ccCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHH--H--cCCCCceEEEECcchhhcccccCCCCE
Confidence 347789999999999999999988 668999999999999 888887 3 3443 377776543
Q ss_pred eeeecccCCCCCccCCccccchHHHHhhhhHH--HHHHHHH-hhccCCcEEEEEeCCCCCCCCHHHHH
Q psy7769 228 SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCE--IEIKHAL-KLVKVGGSVVYSTCSLSPIQNDGVVH 292 (355)
Q Consensus 228 ~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ--~lL~~A~-~~LkpGG~lVYsTCSl~~~ENE~vV~ 292 (355)
...++||.+.+......++|.+..... .... .++++++ +.++|||.+++. +...+++.|.+
T Consensus 196 IvsnPPyi~~~~~l~~~v~~ep~~al~-~~~dgl~~~~~i~~~~l~pgG~l~~e---~~~~q~~~v~~ 259 (284)
T 1nv8_A 196 ILSNPPYVKSSAHLPKDVLFEPPEALF-GGEDGLDFYREFFGRYDTSGKIVLME---IGEDQVEELKK 259 (284)
T ss_dssp EEECCCCBCGGGSCTTSCCCSCHHHHB-CTTTSCHHHHHHHHHCCCTTCEEEEE---CCTTCHHHHTT
T ss_pred EEEcCCCCCcccccChhhccCcHHHhc-CCCcHHHHHHHHHHhcCCCCCEEEEE---ECchHHHHHHH
Confidence 446778766542111113343332111 1111 6789999 999999999973 33445444433
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.1e-08 Score=92.16 Aligned_cols=107 Identities=13% Similarity=0.032 Sum_probs=76.1
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCcc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQN 241 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~ 241 (355)
+.++.+|||+|||+|..+..++...+..+|+++|+++.++ +++++. . .+ ++.++..|...++.+ + +.
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--~--~~--~~~~~~~d~~~~~~~----~-~f 110 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFR--G--NL--KVKYIEADYSKYDFE----E-KY 110 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTC--S--CT--TEEEEESCTTTCCCC----S-CE
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhc--c--CC--CEEEEeCchhccCCC----C-Cc
Confidence 5688999999999999999999987668999999999999 777776 2 22 688888887653332 1 11
Q ss_pred CCccccchHHHHhhhhHH--HHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 242 DGVVHMSLKRIWEETGCE--IEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 242 ~~~l~~~~~~l~~l~~lQ--~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
+- .+...-+..+...+ ++|+++.++|||||.++.++....
T Consensus 111 D~--v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 152 (234)
T 3dtn_A 111 DM--VVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHG 152 (234)
T ss_dssp EE--EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred eE--EEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCC
Confidence 10 00001111111112 689999999999999999987764
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.83 E-value=9.7e-09 Score=89.98 Aligned_cols=108 Identities=17% Similarity=0.100 Sum_probs=72.7
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeeccc--CCCC-C
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTC--SLSP-I 239 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPC--SgsG-~ 239 (355)
.+|.+|||+|||+|..+..++.. +..+|+++|+++.++ +++|++ . .+..+++++++|+..+.... ...- +
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~--~--~~~~~v~~~~~d~~~~~~~~~~~~fD~i 117 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIE--A--LGLSGATLRRGAVAAVVAAGTTSPVDLV 117 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHH--H--HTCSCEEEEESCHHHHHHHCCSSCCSEE
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHH--H--cCCCceEEEEccHHHHHhhccCCCccEE
Confidence 57899999999999999987775 336899999999999 888887 3 34467889988865421100 0000 0
Q ss_pred ccCCccccchHHHHhhhhHHHHHHHHHh--hccCCcEEEEEeCCCC
Q psy7769 240 QNDGVVHMSLKRIWEETGCEIEIKHALK--LVKVGGSVVYSTCSLS 283 (355)
Q Consensus 240 t~~~~l~~~~~~l~~l~~lQ~lL~~A~~--~LkpGG~lVYsTCSl~ 283 (355)
..+....+.. ...++++..+.+ +|+|||.++..+.+-.
T Consensus 118 ~~~~p~~~~~------~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~ 157 (189)
T 3p9n_A 118 LADPPYNVDS------ADVDAILAALGTNGWTREGTVAVVERATTC 157 (189)
T ss_dssp EECCCTTSCH------HHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred EECCCCCcch------hhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence 0000001111 122377888888 9999999999887653
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=3.6e-09 Score=100.68 Aligned_cols=116 Identities=14% Similarity=-0.020 Sum_probs=78.0
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-------------e
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV-------------V 230 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~-------------l 230 (355)
.+.+|||+|||+|+.+..++...+.++|+++|+++..+ +++++..+....+.+++.++..|+.. +
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 45799999999999999998865557999999999999 77777421000223568888877632 4
Q ss_pred ecccCCCCCccCCccccchHHHHhhhh-H-HHHHHHHHhhccCCcEEEEEeCC--CCCCCCHHHHHHHHH
Q psy7769 231 YSTCSLSPIQNDGVVHMSLKRIWEETG-C-EIEIKHALKLVKVGGSVVYSTCS--LSPIQNDGVVHMSLK 296 (355)
Q Consensus 231 DaPCSgsG~t~~~~l~~~~~~l~~l~~-l-Q~lL~~A~~~LkpGG~lVYsTCS--l~~~ENE~vV~~~L~ 296 (355)
|+++...| .... . +++++.+.++|+|||.+++.+|+ +.+.+...+++.+.+
T Consensus 170 d~~~~~~~---------------~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~ 224 (296)
T 1inl_A 170 DSTDPTAG---------------QGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISK 224 (296)
T ss_dssp EC-------------------------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHH
T ss_pred cCCCcccC---------------chhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHH
Confidence 44442111 0011 1 27899999999999999999998 444555555555444
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=9.7e-09 Score=93.62 Aligned_cols=112 Identities=10% Similarity=-0.004 Sum_probs=78.0
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCC
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSL 236 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSg 236 (355)
+..+.+.+|.+|||+|||+|..+..++... ..+|+++|+++.++ +++++. . . .++.+...|...++.|-
T Consensus 48 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~--~---~-~~~~~~~~d~~~~~~~~-- 118 (266)
T 3ujc_A 48 LSDIELNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVS--G---N-NKIIFEANDILTKEFPE-- 118 (266)
T ss_dssp TTTCCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCC--S---C-TTEEEEECCTTTCCCCT--
T ss_pred HHhcCCCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhh--c---C-CCeEEEECccccCCCCC--
Confidence 344567889999999999999999999875 47999999999999 666666 2 1 56888888875432211
Q ss_pred CCCccCCccccchHHHHhh--hhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 237 SPIQNDGVVHMSLKRIWEE--TGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 237 sG~t~~~~l~~~~~~l~~l--~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
+ + -++.+...-+... .....+|+++.++|||||+++.++.+..
T Consensus 119 -~-~--fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (266)
T 3ujc_A 119 -N-N--FDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCAT 163 (266)
T ss_dssp -T-C--EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred -C-c--EEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 0 0 0111111112222 2233889999999999999999876543
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.3e-08 Score=92.61 Aligned_cols=125 Identities=11% Similarity=-0.009 Sum_probs=81.6
Q ss_pred chhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcc-eEEEEEecc
Q psy7769 152 DGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIH-ALKLVKVGG 227 (355)
Q Consensus 152 D~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~-~v~~~~~Da 227 (355)
.....+...++...++.+|||+|||+|..+..++..++ .++|+++|+++.++ +++++. . .+.. ++.+..+|+
T Consensus 46 ~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~--~--~g~~~~v~~~~~d~ 121 (239)
T 2hnk_A 46 PEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWK--E--NGLENKIFLKLGSA 121 (239)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHH--H--TTCGGGEEEEESCH
T ss_pred HHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH--H--cCCCCCEEEEECCH
Confidence 33344555566677899999999999999999998865 48999999999999 777876 3 3443 488888887
Q ss_pred eeeec--ccC------CCCCc---cCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 228 SVVYS--TCS------LSPIQ---NDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 228 ~~lDa--PCS------gsG~t---~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
....+ +.. ..+.. ..-++.+... .......+++.+.++|+|||++++.++.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~---~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~ 185 (239)
T 2hnk_A 122 LETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDA---DKENYPNYYPLILKLLKPGGLLIADNVLWD 185 (239)
T ss_dssp HHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECS---CGGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred HHHHHHHHhhcccccccccccCCCCCcCEEEEeC---CHHHHHHHHHHHHHHcCCCeEEEEEccccC
Confidence 43111 000 00000 0011111000 011222779999999999999999886554
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=8.6e-09 Score=95.30 Aligned_cols=120 Identities=12% Similarity=0.039 Sum_probs=80.8
Q ss_pred echhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEec
Q psy7769 151 MDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVG 226 (355)
Q Consensus 151 QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~D 226 (355)
+.....+...++...++.+|||+|||+|..+..++..++ .++|+++|+++.++ ++++++ . .+. .++.++.+|
T Consensus 64 ~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~--~--~g~~~~i~~~~gd 139 (247)
T 1sui_A 64 SADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIK--K--AGVDHKIDFREGP 139 (247)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHH--H--TTCGGGEEEEESC
T ss_pred CHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH--H--cCCCCCeEEEECC
Confidence 344455555666666778999999999999999999875 58999999999999 888887 3 344 568899888
Q ss_pred ceeeeccc--CC--CCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 227 GSVVYSTC--SL--SPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 227 a~~lDaPC--Sg--sG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
+...-+.. .+ .+ +. ++.+.... .......++.+.++|||||.|++..+
T Consensus 140 a~~~l~~l~~~~~~~~-~f--D~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~ 191 (247)
T 1sui_A 140 ALPVLDEMIKDEKNHG-SY--DFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_dssp HHHHHHHHHHSGGGTT-CB--SEEEECSC---STTHHHHHHHHHHHBCTTCCEEEECT
T ss_pred HHHHHHHHHhccCCCC-CE--EEEEEcCc---hHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 75421100 00 00 11 11110000 01122789999999999999998763
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.81 E-value=9.2e-09 Score=95.88 Aligned_cols=105 Identities=10% Similarity=0.015 Sum_probs=78.5
Q ss_pred HHHHHhhCCCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceee-
Q psy7769 156 LLPVLALNIRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVV- 230 (355)
Q Consensus 156 ~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~l- 230 (355)
...+..+++.+|.+|||+|||+|..+..++... ..++|+++|+++.++ ++++++ . .+. .++.+...|....
T Consensus 102 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~--~--~~~~~~v~~~~~d~~~~~ 177 (277)
T 1o54_A 102 SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLT--K--WGLIERVTIKVRDISEGF 177 (277)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHH--H--TTCGGGEEEECCCGGGCC
T ss_pred HHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHH--H--cCCCCCEEEEECCHHHcc
Confidence 455667789999999999999999999999884 358999999999999 788877 3 243 4678877776431
Q ss_pred -----ecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 231 -----YSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 231 -----DaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
|.-.+ .+. ...++|.++.++|+|||++++.+++.
T Consensus 178 ~~~~~D~V~~------------~~~------~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (277)
T 1o54_A 178 DEKDVDALFL------------DVP------DPWNYIDKCWEALKGGGRFATVCPTT 216 (277)
T ss_dssp SCCSEEEEEE------------CCS------CGGGTHHHHHHHEEEEEEEEEEESSH
T ss_pred cCCccCEEEE------------CCc------CHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 11110 000 01156889999999999999998865
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=3.6e-09 Score=96.94 Aligned_cols=107 Identities=17% Similarity=0.059 Sum_probs=70.9
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCcc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQN 241 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~ 241 (355)
..+|.+|||+|||.|..+.++++.. ...|+++|+++..+ ++++.. . ...++.++.+|+..+..+... + +.
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~~-~~~v~~id~~~~~~~~a~~~~~--~---~~~~~~~~~~~a~~~~~~~~~-~-~F 129 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAP--R---QTHKVIPLKGLWEDVAPTLPD-G-HF 129 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTSC-EEEEEEEECCHHHHHHHHHHGG--G---CSSEEEEEESCHHHHGGGSCT-T-CE
T ss_pred ccCCCeEEEECCCccHHHHHHHHhC-CcEEEEEeCCHHHHHHHHHHHh--h---CCCceEEEeehHHhhcccccc-c-CC
Confidence 4689999999999999998887653 36899999999999 777776 2 224677777776543222200 0 00
Q ss_pred CCccc----cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 242 DGVVH----MSLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 242 ~~~l~----~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
+. +. ............+.+++++.++|||||+++|.+
T Consensus 130 D~-i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 130 DG-ILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp EE-EEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ce-EEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence 00 00 011112222333478999999999999999965
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.2e-08 Score=92.10 Aligned_cols=117 Identities=9% Similarity=0.021 Sum_probs=87.7
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcc-eEEEEEeccee-------eecc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIH-ALKLVKVGGSV-------VYST 233 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~-~v~~~~~Da~~-------lDaP 233 (355)
+.+|++|||+|||+|..++.+|.....++|+|+|+++..+ +++|++ . .+.. +|++..+|+.. +|+-
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~--~--~gl~~~i~~~~~d~l~~l~~~~~~D~I 88 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVE--A--HGLKEKIQVRLANGLAAFEETDQVSVI 88 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHH--H--TTCTTTEEEEECSGGGGCCGGGCCCEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH--H--cCCCceEEEEECchhhhcccCcCCCEE
Confidence 5689999999999999999999876557999999999999 899998 3 3553 58999999842 2222
Q ss_pred c-CCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceEEEe
Q psy7769 234 C-SLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIK 309 (355)
Q Consensus 234 C-SgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~ 309 (355)
. .|.| .. .+.+||..+...|++||++|.+.- .+...|..+|.++ |+.+.-.
T Consensus 89 viaG~G-----------g~-----~i~~Il~~~~~~L~~~~~lVlq~~-----~~~~~vr~~L~~~----Gf~i~~e 140 (225)
T 3kr9_A 89 TIAGMG-----------GR-----LIARILEEGLGKLANVERLILQPN-----NREDDLRIWLQDH----GFQIVAE 140 (225)
T ss_dssp EEEEEC-----------HH-----HHHHHHHHTGGGCTTCCEEEEEES-----SCHHHHHHHHHHT----TEEEEEE
T ss_pred EEcCCC-----------hH-----HHHHHHHHHHHHhCCCCEEEEECC-----CCHHHHHHHHHHC----CCEEEEE
Confidence 2 1212 00 122899999999999999999655 4788888888763 5555433
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.8e-08 Score=91.83 Aligned_cols=121 Identities=12% Similarity=0.006 Sum_probs=79.9
Q ss_pred hhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecce
Q psy7769 153 GASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGS 228 (355)
Q Consensus 153 ~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~ 228 (355)
....+...++...++.+|||+|||+|..+..++..++ .++|+++|+++.++ ++++++ . .+. .++.+..+|+.
T Consensus 59 ~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~--~--~g~~~~i~~~~~d~~ 134 (232)
T 3cbg_A 59 EQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQ--K--AGVAEKISLRLGPAL 134 (232)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHH--H--HTCGGGEEEEESCHH
T ss_pred HHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH--H--cCCCCcEEEEEcCHH
Confidence 3344444555556788999999999999999998765 47999999999999 777776 3 244 45888888864
Q ss_pred ee--ecccCC-CCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 229 VV--YSTCSL-SPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 229 ~l--DaPCSg-sG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
.. ..+-.+ .+ . -++.+.... .......++.+.++|+|||.|++..+.+.
T Consensus 135 ~~l~~l~~~~~~~-~--fD~V~~d~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 186 (232)
T 3cbg_A 135 ATLEQLTQGKPLP-E--FDLIFIDAD---KRNYPRYYEIGLNLLRRGGLMVIDNVLWH 186 (232)
T ss_dssp HHHHHHHTSSSCC-C--EEEEEECSC---GGGHHHHHHHHHHTEEEEEEEEEECTTGG
T ss_pred HHHHHHHhcCCCC-C--cCEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEeCCCcC
Confidence 21 001000 00 0 011110000 01222789999999999999999988764
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=9.8e-09 Score=93.69 Aligned_cols=109 Identities=7% Similarity=-0.083 Sum_probs=72.0
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCC-chhh--H---HhhccccccccCcceEEEEEecceeeecccCCC
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGAS-LLPV--L---ALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLS 237 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s-~~Rl--l---~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgs 237 (355)
.++|++|||+|||+|..+..+|+....+.|+++|+| +.++ + ++++. . .+..++.+...|+..++... .
T Consensus 22 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~--~--~~~~~v~~~~~d~~~l~~~~--~ 95 (225)
T 3p2e_A 22 GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPS--K--GGLSNVVFVIAAAESLPFEL--K 95 (225)
T ss_dssp TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGG--G--TCCSSEEEECCBTTBCCGGG--T
T ss_pred CCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHH--H--cCCCCeEEEEcCHHHhhhhc--c
Confidence 468999999999999999999976555789999999 6664 3 55554 2 35568899999987652111 1
Q ss_pred CCccCCcc--ccchHHHHhh-hhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 238 PIQNDGVV--HMSLKRIWEE-TGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 238 G~t~~~~l--~~~~~~l~~l-~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
+....-.+ .|... .... .....+|..+.++|||||+++.++
T Consensus 96 d~v~~i~~~~~~~~~-~~~~~~~~~~~l~~~~r~LkpGG~l~i~~ 139 (225)
T 3p2e_A 96 NIADSISILFPWGTL-LEYVIKPNRDILSNVADLAKKEAHFEFVT 139 (225)
T ss_dssp TCEEEEEEESCCHHH-HHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred CeEEEEEEeCCCcHH-hhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence 11000001 12221 1111 111278999999999999999844
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.5e-08 Score=89.69 Aligned_cols=119 Identities=14% Similarity=0.001 Sum_probs=82.6
Q ss_pred cHHHHHhhC--CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-
Q psy7769 155 SLLPVLALN--IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV- 229 (355)
Q Consensus 155 S~l~~~~L~--~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~- 229 (355)
.......+. +.++.+|||+|||+|..+..++.. +..+|+++|+++.++ +++++. . .+..++.+...|...
T Consensus 47 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~--~--~~~~~v~~~~~d~~~~ 121 (205)
T 3grz_A 47 TQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKL-GAKSVLATDISDESMTAAEENAA--L--NGIYDIALQKTSLLAD 121 (205)
T ss_dssp HHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHH--H--TTCCCCEEEESSTTTT
T ss_pred HHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHH--H--cCCCceEEEecccccc
Confidence 344444444 678999999999999999998875 346999999999999 777776 3 344457888888743
Q ss_pred ----eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 230 ----VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 230 ----lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
+|.-.+. .... .+..+++.+.++|+|||++++++... +....+...+++
T Consensus 122 ~~~~fD~i~~~----------~~~~------~~~~~l~~~~~~L~~gG~l~~~~~~~---~~~~~~~~~~~~ 174 (205)
T 3grz_A 122 VDGKFDLIVAN----------ILAE------ILLDLIPQLDSHLNEDGQVIFSGIDY---LQLPKIEQALAE 174 (205)
T ss_dssp CCSCEEEEEEE----------SCHH------HHHHHGGGSGGGEEEEEEEEEEEEEG---GGHHHHHHHHHH
T ss_pred CCCCceEEEEC----------CcHH------HHHHHHHHHHHhcCCCCEEEEEecCc---ccHHHHHHHHHH
Confidence 2222211 0011 12378999999999999999976654 345556666654
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=6.3e-09 Score=95.57 Aligned_cols=128 Identities=9% Similarity=-0.095 Sum_probs=84.3
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHh----cCCCcEEEEcCCchhh-HHhhccccccccCcceEEEEEecceeee
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQT----LYPDYYCMDGASLLPV-LALNIRPYDTVLDIHALKLVKVGGSVVY 231 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~----~~~g~V~AvD~s~~Rl-l~~~l~r~~~~~g~~~v~~~~~Da~~lD 231 (355)
+...++...++.+|||+|||+|+.|..+|.. ...++|+++|+++.++ ..+.+. .+++++.+|+...+
T Consensus 72 ~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~--------~~v~~~~gD~~~~~ 143 (236)
T 2bm8_A 72 VYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDM--------ENITLHQGDCSDLT 143 (236)
T ss_dssp HHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGC--------TTEEEEECCSSCSG
T ss_pred HHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccC--------CceEEEECcchhHH
Confidence 3344455556789999999999999999987 3458999999999988 322211 46889999986531
Q ss_pred -cccCCCCCccCCccccchHHHHhhhhHHHHHHHHHh-hccCCcEEEEEe-CCCCCCCCHHHHHHHHHhh
Q psy7769 232 -STCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALK-LVKVGGSVVYST-CSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 232 -aPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~-~LkpGG~lVYsT-CSl~~~ENE~vV~~~L~~~ 298 (355)
.|.-..+ ..+. +..... . .....+|.++.+ +|||||+||+.. |.+.+..+...+..+++.+
T Consensus 144 ~l~~~~~~-~fD~-I~~d~~---~-~~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~ 207 (236)
T 2bm8_A 144 TFEHLREM-AHPL-IFIDNA---H-ANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAF 207 (236)
T ss_dssp GGGGGSSS-CSSE-EEEESS---C-SSHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTT
T ss_pred HHHhhccC-CCCE-EEECCc---h-HhHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhC
Confidence 1210000 0011 110000 0 123378999997 999999999974 4555566777888888875
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.76 E-value=6.3e-08 Score=84.59 Aligned_cols=110 Identities=16% Similarity=0.121 Sum_probs=68.8
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCC---------CcEEEEcCCchhhHHhhccccccccCcceEEEE-Ee--------
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYP---------DYYCMDGASLLPVLALNIRPYDTVLDIHALKLV-KV-------- 225 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~---------g~V~AvD~s~~Rll~~~l~r~~~~~g~~~v~~~-~~-------- 225 (355)
+++|++|||+|||||..+..+++..+. ++|+++|+++.+.+ .++.++ ..
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~-------------~~~~~~~~~d~~~~~~~ 86 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPL-------------EGATFLCPADVTDPRTS 86 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCC-------------TTCEEECSCCTTSHHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccC-------------CCCeEEEeccCCCHHHH
Confidence 678999999999999999999988643 78999999985410 011222 22
Q ss_pred ------------cceeeecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHH
Q psy7769 226 ------------GGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVH 292 (355)
Q Consensus 226 ------------Da~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~ 292 (355)
|....|.++..+| .|..+.. ....++ .+++.+.++|||||+++.+++.. ++...+.
T Consensus 87 ~~~~~~~~~~~fD~V~~~~~~~~~~-------~~~~~~~-~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~---~~~~~~~ 155 (196)
T 2nyu_A 87 QRILEVLPGRRADVILSDMAPNATG-------FRDLDHD-RLISLCLTLLSVTPDILQPGGTFLCKTWAG---SQSRRLQ 155 (196)
T ss_dssp HHHHHHSGGGCEEEEEECCCCCCCS-------CHHHHHH-HHHHHHHHHHHHHHHHEEEEEEEEEEECCS---GGGHHHH
T ss_pred HHHHHhcCCCCCcEEEeCCCCCCCC-------CcccCHH-HHHHHHHHHHHHHHHHhcCCCEEEEEecCC---ccHHHHH
Confidence 2222333222222 1212211 112233 88999999999999999987644 3334444
Q ss_pred HHHHh
Q psy7769 293 MSLKR 297 (355)
Q Consensus 293 ~~L~~ 297 (355)
..+..
T Consensus 156 ~~l~~ 160 (196)
T 2nyu_A 156 RRLTE 160 (196)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 45544
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=98.76 E-value=6.2e-09 Score=91.57 Aligned_cols=124 Identities=8% Similarity=-0.083 Sum_probs=67.2
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEE----------------ec
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVK----------------VG 226 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~----------------~D 226 (355)
.++.+|||+|||+|..+..++......+|+++|+++.++ +++++. . .+. ++.++. .|
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~--~--~~~-~~~~~~~d~~~~~~~~~~~~~~fD 103 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAE--R--FGA-VVDWAAADGIEWLIERAERGRPWH 103 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC------------------------CCHHHHHHHHHHHHHTTCCBS
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHH--H--hCC-ceEEEEcchHhhhhhhhhccCccc
Confidence 788999999999999999999987557999999999999 777776 2 222 344433 34
Q ss_pred ceeeecccCCCCCccC--Cccc-cchHHH-----HhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHH
Q psy7769 227 GSVVYSTCSLSPIQND--GVVH-MSLKRI-----WEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLK 296 (355)
Q Consensus 227 a~~lDaPCSgsG~t~~--~~l~-~~~~~l-----~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~ 296 (355)
....|+|+...+.... ..+. +.+... ..+..+..+++++.++|||||++++.++.. .....+..++.
T Consensus 104 ~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~~~~~~~l~ 178 (215)
T 4dzr_A 104 AIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH---NQADEVARLFA 178 (215)
T ss_dssp EEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT---SCHHHHHHHTG
T ss_pred EEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC---ccHHHHHHHHH
Confidence 4457777744331000 0000 111000 001111378999999999999966666553 45566666665
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1e-08 Score=99.18 Aligned_cols=91 Identities=20% Similarity=0.163 Sum_probs=73.1
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEeccee---------ee
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSV---------VY 231 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~---------lD 231 (355)
..+|.+|||+|||+|+.+.. |. +..+|+|+|+++..+ +++|++ . .+. .++.++++|+.. +|
T Consensus 193 ~~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~--~--n~l~~~v~~~~~D~~~~~~~fD~Vi~d 265 (336)
T 2yx1_A 193 VSLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIK--L--NKLEHKIIPILSDVREVDVKGNRVIMN 265 (336)
T ss_dssp CCTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHH--H--TTCTTTEEEEESCGGGCCCCEEEEEEC
T ss_pred cCCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHH--H--cCCCCcEEEEECChHHhcCCCcEEEEC
Confidence 35899999999999999999 76 357899999999999 888887 3 344 468888888743 44
Q ss_pred cccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 232 STCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 232 aPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
+|..+ . +++..+.++|+|||.++|++|+-.
T Consensus 266 pP~~~----------------~------~~l~~~~~~L~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 266 LPKFA----------------H------KFIDKALDIVEEGGVIHYYTIGKD 295 (336)
T ss_dssp CTTTG----------------G------GGHHHHHHHEEEEEEEEEEEEESS
T ss_pred CcHhH----------------H------HHHHHHHHHcCCCCEEEEEEeecC
Confidence 44311 0 568899999999999999999987
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.5e-08 Score=93.61 Aligned_cols=107 Identities=14% Similarity=0.007 Sum_probs=76.1
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCc
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQ 240 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t 240 (355)
.+.++.+|||+|||+|..+..++...+.++|+++|+++.++ +++++. . .+..++.+...|...+..+- + +
T Consensus 34 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--~--~~~~~~~~~~~d~~~~~~~~---~-~ 105 (276)
T 3mgg_A 34 VYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTE--K--NGIKNVKFLQANIFSLPFED---S-S 105 (276)
T ss_dssp CCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHH--H--TTCCSEEEEECCGGGCCSCT---T-C
T ss_pred cCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH--H--cCCCCcEEEEcccccCCCCC---C-C
Confidence 45789999999999999999999886568999999999999 777776 3 35567889988876432221 1 0
Q ss_pred cCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 241 NDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 241 ~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
-++.+...-+........+|+++.++|||||.++..+
T Consensus 106 --fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~ 142 (276)
T 3mgg_A 106 --FDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIE 142 (276)
T ss_dssp --EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred --eeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 0111111111122223378999999999999999986
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.6e-08 Score=92.03 Aligned_cols=118 Identities=12% Similarity=0.057 Sum_probs=88.0
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEeccee-------eecc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSV-------VYST 233 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~-------lDaP 233 (355)
+.+|++|||+|||+|..++.++.....++|+|+|+++..+ +++|++ . .+. .++.+..+|+.. +|+-
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~--~--~gl~~~I~~~~gD~l~~~~~~~~~D~I 94 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVS--E--HGLTSKIDVRLANGLSAFEEADNIDTI 94 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHH--H--TTCTTTEEEEECSGGGGCCGGGCCCEE
T ss_pred CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH--H--cCCCCcEEEEECchhhccccccccCEE
Confidence 5689999999999999999999876557899999999999 899998 3 344 359999999753 2322
Q ss_pred c-CCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceEEEec
Q psy7769 234 C-SLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKD 310 (355)
Q Consensus 234 C-SgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~~ 310 (355)
. .|.| .+ .+.+||..+...|+++|++|.+.- .++..|..+|.++ |+.+.-..
T Consensus 95 viaGmG----------g~------lI~~IL~~~~~~l~~~~~lIlqp~-----~~~~~lr~~L~~~----Gf~i~~E~ 147 (230)
T 3lec_A 95 TICGMG----------GR------LIADILNNDIDKLQHVKTLVLQPN-----NREDDLRKWLAAN----DFEIVAED 147 (230)
T ss_dssp EEEEEC----------HH------HHHHHHHHTGGGGTTCCEEEEEES-----SCHHHHHHHHHHT----TEEEEEEE
T ss_pred EEeCCc----------hH------HHHHHHHHHHHHhCcCCEEEEECC-----CChHHHHHHHHHC----CCEEEEEE
Confidence 1 1222 01 112889999999999999998763 4688888888764 55554433
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1e-08 Score=91.16 Aligned_cols=129 Identities=12% Similarity=0.066 Sum_probs=88.1
Q ss_pred echhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce
Q psy7769 151 MDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS 228 (355)
Q Consensus 151 QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~ 228 (355)
+..-..+....+...++.+|||+|||+|..+..++... ..|+++|+++.++ +++++. . ..++.+...|..
T Consensus 36 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~--~----~~~~~~~~~d~~ 107 (216)
T 3ofk_A 36 RERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTK--R----WSHISWAATDIL 107 (216)
T ss_dssp HHHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTT--T----CSSEEEEECCTT
T ss_pred HHHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcc--c----CCCeEEEEcchh
Confidence 43445556666777889999999999999999998875 6899999999999 777776 2 236889888875
Q ss_pred eee------cccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC------CCCCCCCHHHHHHHHH
Q psy7769 229 VVY------STCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC------SLSPIQNDGVVHMSLK 296 (355)
Q Consensus 229 ~lD------aPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC------Sl~~~ENE~vV~~~L~ 296 (355)
.+. .-.+... +.+-+ ....+..+|.++.++|||||.++++|. .+....+...+..++.
T Consensus 108 ~~~~~~~fD~v~~~~~------l~~~~----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (216)
T 3ofk_A 108 QFSTAELFDLIVVAEV------LYYLE----DMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRRWGHVAGAETVITILT 177 (216)
T ss_dssp TCCCSCCEEEEEEESC------GGGSS----SHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHTTCSCCHHHHHHHHH
T ss_pred hCCCCCCccEEEEccH------HHhCC----CHHHHHHHHHHHHHHcCCCCEEEEEecCCCcchhhhhhhhHHHHHHHHH
Confidence 533 2211100 11111 111223789999999999999999873 3334555566666665
Q ss_pred h
Q psy7769 297 R 297 (355)
Q Consensus 297 ~ 297 (355)
.
T Consensus 178 ~ 178 (216)
T 3ofk_A 178 E 178 (216)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.75 E-value=4.3e-08 Score=86.15 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=34.2
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcC--CCcEEEEcCCch
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLY--PDYYCMDGASLL 201 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~--~g~V~AvD~s~~ 201 (355)
+++|.+|||+|||||+.|..+++..+ .++|+|+|+++.
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~ 59 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM 59 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc
Confidence 57899999999999999999998875 589999999984
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.75 E-value=2.6e-08 Score=85.96 Aligned_cols=102 Identities=16% Similarity=0.006 Sum_probs=70.5
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEeccee--------eec
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSV--------VYS 232 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~--------lDa 232 (355)
..++.+|||+|||+|..+..++.. +..+|+++|+++.++ ++++++ . .+. .++.++..|+.. .|.
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~--~--~~~~~~~~~~~~d~~~~~~~~~~~fD~ 103 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNII--M--TKAENRFTLLKMEAERAIDCLTGRFDL 103 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHH--T--TTCGGGEEEECSCHHHHHHHBCSCEEE
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHH--H--cCCCCceEEEECcHHHhHHhhcCCCCE
Confidence 568899999999999999999887 346999999999999 888887 3 344 368888877643 111
Q ss_pred ccCCCCCccCCccccchHHHHhhhhHHHHHHHH--HhhccCCcEEEEEeCCCCC
Q psy7769 233 TCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHA--LKLVKVGGSVVYSTCSLSP 284 (355)
Q Consensus 233 PCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A--~~~LkpGG~lVYsTCSl~~ 284 (355)
-.+. .. +... ...+.++.. .++|+|||.+++++++-..
T Consensus 104 i~~~------~~--~~~~------~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~ 143 (177)
T 2esr_A 104 VFLD------PP--YAKE------TIVATIEALAAKNLLSEQVMVVCETDKTVL 143 (177)
T ss_dssp EEEC------CS--SHHH------HHHHHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred EEEC------CC--CCcc------hHHHHHHHHHhCCCcCCCcEEEEEECCccc
Confidence 1100 00 1111 111344444 4999999999999887643
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=98.75 E-value=9.4e-09 Score=94.70 Aligned_cols=115 Identities=12% Similarity=0.058 Sum_probs=79.3
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecc
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYST 233 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaP 233 (355)
.....+.+.+|.+|||+|||+|..+..++... ..+|+++|+|+.++ +++++. . .+. .++.+...|...+..+
T Consensus 52 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~--~--~~~~~~~~~~~~d~~~~~~~ 126 (273)
T 3bus_A 52 EMIALLDVRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARAT--A--AGLANRVTFSYADAMDLPFE 126 (273)
T ss_dssp HHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHH--H--TTCTTTEEEEECCTTSCCSC
T ss_pred HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHH--h--cCCCcceEEEECccccCCCC
Confidence 34455677899999999999999999998865 47999999999999 666665 2 233 3688888887543221
Q ss_pred cCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 234 CSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 234 CSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
- + + -++.+...-+........+|+++.++|||||+++.++...
T Consensus 127 ~---~-~--fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 169 (273)
T 3bus_A 127 D---A-S--FDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVL 169 (273)
T ss_dssp T---T-C--EEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred C---C-C--ccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeec
Confidence 1 0 0 0111111112222223478999999999999999988654
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.4e-08 Score=97.17 Aligned_cols=96 Identities=9% Similarity=-0.051 Sum_probs=61.9
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcC----Cchhh-HHhhccccccccCcceEEEEEe-ccee--------
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGA----SLLPV-LALNIRPYDTVLDIHALKLVKV-GGSV-------- 229 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~----s~~Rl-l~~~l~r~~~~~g~~~v~~~~~-Da~~-------- 229 (355)
+++|.+|||+|||||+.|..+++. ++|+++|+ ++.++ .. ..+ . .+.+++.++.. |...
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~-~~~--~--~~~~~v~~~~~~D~~~l~~~~fD~ 151 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPI-PMS--T--YGWNLVRLQSGVDVFFIPPERCDT 151 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCC-CCC--S--TTGGGEEEECSCCTTTSCCCCCSE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHH-Hhh--h--cCCCCeEEEeccccccCCcCCCCE
Confidence 578999999999999999999886 68999999 55444 11 112 1 22345777766 6542
Q ss_pred --eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 230 --VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 230 --lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
.|.+|+ +|. |..+... .+ .+|..+.++|||||.++..+
T Consensus 152 V~sd~~~~-~g~-------~~~d~~~---~l-~~L~~~~~~LkpGG~~v~kv 191 (305)
T 2p41_A 152 LLCDIGES-SPN-------PTVEAGR---TL-RVLNLVENWLSNNTQFCVKV 191 (305)
T ss_dssp EEECCCCC-CSS-------HHHHHHH---HH-HHHHHHHHHCCTTCEEEEEE
T ss_pred EEECCccc-cCc-------chhhHHH---HH-HHHHHHHHHhCCCCEEEEEe
Confidence 343332 231 1111110 01 47888999999999888643
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=98.75 E-value=2.3e-08 Score=89.27 Aligned_cols=115 Identities=11% Similarity=-0.108 Sum_probs=72.2
Q ss_pred hCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcccccc--------ccCcceEEEEEecceeee
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDT--------VLDIHALKLVKVGGSVVY 231 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~--------~~g~~~v~~~~~Da~~lD 231 (355)
+.+.+|.+|||+|||+|..+..+++.+ ..|+|+|+|+.++ ++++...... .....++.+.++|+..++
T Consensus 18 l~~~~~~~vLD~GCG~G~~~~~la~~g--~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~ 95 (203)
T 1pjz_A 18 LNVVPGARVLVPLCGKSQDMSWLSGQG--YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT 95 (203)
T ss_dssp HCCCTTCEEEETTTCCSHHHHHHHHHC--CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST
T ss_pred cccCCCCEEEEeCCCCcHhHHHHHHCC--CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCC
Confidence 456789999999999999999999874 5899999999999 6555431000 001246788888875432
Q ss_pred cccCCCCCccCCccccchHHHHhhh--hHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 232 STCSLSPIQNDGVVHMSLKRIWEET--GCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 232 aPCSgsG~t~~~~l~~~~~~l~~l~--~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
.+- .+ + -++.+...-+..+. ..+..++++.++|||||++++.|+...
T Consensus 96 ~~~--~~-~--fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~ 144 (203)
T 1pjz_A 96 ARD--IG-H--CAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYD 144 (203)
T ss_dssp HHH--HH-S--EEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSC
T ss_pred ccc--CC-C--EEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecC
Confidence 210 00 0 00001000011111 112689999999999999777776654
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.6e-08 Score=89.16 Aligned_cols=113 Identities=12% Similarity=0.054 Sum_probs=76.7
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeeccc
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTC 234 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPC 234 (355)
....+.++++ +|||+|||+|..+..++.. ...+|+++|+++.++ +++++. . .+. .++.+...|...++.+-
T Consensus 36 ~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~--~--~~~~~~~~~~~~d~~~~~~~~ 109 (219)
T 3dlc_A 36 IINRFGITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIA--D--ANLNDRIQIVQGDVHNIPIED 109 (219)
T ss_dssp HHHHHCCCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHH--H--TTCTTTEEEEECBTTBCSSCT
T ss_pred HHHhcCCCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHH--h--ccccCceEEEEcCHHHCCCCc
Confidence 3445566677 9999999999999999987 447999999999999 777776 3 233 46889888875532211
Q ss_pred CCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 235 SLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 235 SgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
+ .-++.+...-+........+|+++.++|||||.++.++...
T Consensus 110 ---~---~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 151 (219)
T 3dlc_A 110 ---N---YADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFG 151 (219)
T ss_dssp ---T---CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred ---c---cccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccC
Confidence 0 00111111111122233378999999999999999986444
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.4e-08 Score=90.90 Aligned_cols=109 Identities=7% Similarity=-0.061 Sum_probs=73.5
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeeccc
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTC 234 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPC 234 (355)
-.+..+.+.++.+|||+|||+|..+..++...+.++|+++|+++.++ ++++.. ++.+...|+..+. +-
T Consensus 24 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~---------~~~~~~~d~~~~~-~~ 93 (259)
T 2p35_A 24 DLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLP---------NTNFGKADLATWK-PA 93 (259)
T ss_dssp HHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHST---------TSEEEECCTTTCC-CS
T ss_pred HHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCC---------CcEEEECChhhcC-cc
Confidence 33445567789999999999999999999886568999999999999 555432 3466777765432 10
Q ss_pred CCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 235 SLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 235 SgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
+ +. ++.+...-+........+|+++.++|||||+++.++..
T Consensus 94 ---~-~f--D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 94 ---Q-KA--DLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPD 134 (259)
T ss_dssp ---S-CE--EEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred ---C-Cc--CEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 0 00 11111111111223337899999999999999998853
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=98.73 E-value=2e-08 Score=93.87 Aligned_cols=109 Identities=7% Similarity=-0.078 Sum_probs=76.5
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccCCCCC
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLSPI 239 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG~ 239 (355)
.+.++.+|||+|||+|..+..++... ..+|+++|+++.++ +++++. . .+. .++.+...|...+..+- +
T Consensus 79 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~--~--~~~~~~~~~~~~d~~~~~~~~---~- 149 (297)
T 2o57_A 79 VLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNN--Q--AGLADNITVKYGSFLEIPCED---N- 149 (297)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHH--H--HTCTTTEEEEECCTTSCSSCT---T-
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHH--h--cCCCcceEEEEcCcccCCCCC---C-
Confidence 77899999999999999999999875 36999999999999 666665 2 233 46888888875432111 0
Q ss_pred ccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 240 QNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 240 t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
+ -++.+...-+........+|+++.++|||||+++.++...
T Consensus 150 ~--fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 190 (297)
T 2o57_A 150 S--YDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMK 190 (297)
T ss_dssp C--EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred C--EeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 0 0111111112222333488999999999999999997654
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.4e-08 Score=98.18 Aligned_cols=116 Identities=12% Similarity=0.032 Sum_probs=83.7
Q ss_pred echhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc---ceEEEEEe
Q psy7769 151 MDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI---HALKLVKV 225 (355)
Q Consensus 151 QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~---~~v~~~~~ 225 (355)
.|.++.+....+...++.+|||+|||+|..+..++...+..+|+++|+++.++ +++|+. . .+. .++.+...
T Consensus 207 ~d~~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~--~--ngl~~~~~v~~~~~ 282 (375)
T 4dcm_A 207 LDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVE--T--NMPEALDRCEFMIN 282 (375)
T ss_dssp CCHHHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHH--H--HCGGGGGGEEEEEC
T ss_pred ccHHHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHH--H--cCCCcCceEEEEec
Confidence 45667777888888888999999999999999999987668999999999999 788877 3 232 25777777
Q ss_pred ccee-----------eecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCC
Q psy7769 226 GGSV-----------VYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSP 284 (355)
Q Consensus 226 Da~~-----------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~ 284 (355)
|+.. +++|..... +.. .... ++++.+.+.|||||++++++-+..+
T Consensus 283 D~~~~~~~~~fD~Ii~nppfh~~~--------~~~------~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~ 339 (375)
T 4dcm_A 283 NALSGVEPFRFNAVLCNPPFHQQH--------ALT------DNVAWEMFHHARRCLKINGELYIVANRHLD 339 (375)
T ss_dssp STTTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHHEEEEEEEEEEEETTSC
T ss_pred hhhccCCCCCeeEEEECCCcccCc--------ccC------HHHHHHHHHHHHHhCCCCcEEEEEEECCcC
Confidence 7542 333321000 000 0112 7899999999999999997655543
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.7e-08 Score=90.71 Aligned_cols=112 Identities=17% Similarity=0.076 Sum_probs=79.5
Q ss_pred HHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhcccccccc-CcceEEEEEecceeee
Q psy7769 156 LLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVL-DIHALKLVKVGGSVVY 231 (355)
Q Consensus 156 ~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~-g~~~v~~~~~Da~~lD 231 (355)
...+..+++.+|++|||+|||+|..+..++...+ .++|+++|+++.++ ++++++ . . +..++.+...|....+
T Consensus 86 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~--~--~~g~~~v~~~~~d~~~~~ 161 (258)
T 2pwy_A 86 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVR--A--FWQVENVRFHLGKLEEAE 161 (258)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHH--H--HCCCCCEEEEESCGGGCC
T ss_pred HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH--H--hcCCCCEEEEECchhhcC
Confidence 4566677889999999999999999999998853 58999999999999 777776 3 2 4457888888875321
Q ss_pred cccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 232 STCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 232 aPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
.+- + ..+. +.... .....+|+++.++|+|||+++..+.+.
T Consensus 162 ~~~---~-~~D~-v~~~~------~~~~~~l~~~~~~L~~gG~l~~~~~~~ 201 (258)
T 2pwy_A 162 LEE---A-AYDG-VALDL------MEPWKVLEKAALALKPDRFLVAYLPNI 201 (258)
T ss_dssp CCT---T-CEEE-EEEES------SCGGGGHHHHHHHEEEEEEEEEEESCH
T ss_pred CCC---C-CcCE-EEECC------cCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 110 0 0000 10000 011157999999999999999988654
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.6e-08 Score=93.30 Aligned_cols=113 Identities=12% Similarity=0.066 Sum_probs=79.6
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeeccc
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTC 234 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPC 234 (355)
....+.+.+|.+|||+|||+|..+..++... ..+|+++|+++.++ +++++. . .+. .++.+...|...++
T Consensus 82 ~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~--~--~~~~~~v~~~~~d~~~~~--- 153 (318)
T 2fk8_A 82 NLDKLDLKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLA--S--IDTNRSRQVLLQGWEDFA--- 153 (318)
T ss_dssp HHTTSCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHH--T--SCCSSCEEEEESCGGGCC---
T ss_pred HHHhcCCCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHH--h--cCCCCceEEEECChHHCC---
Confidence 3445567899999999999999999999875 36999999999999 777776 3 233 45888888875432
Q ss_pred CCCCCccCCccccchHHHHhh--hhHHHHHHHHHhhccCCcEEEEEeCCCCC
Q psy7769 235 SLSPIQNDGVVHMSLKRIWEE--TGCEIEIKHALKLVKVGGSVVYSTCSLSP 284 (355)
Q Consensus 235 SgsG~t~~~~l~~~~~~l~~l--~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~ 284 (355)
+ +.+.- +...-+... .....+|+++.++|||||+++.++.+...
T Consensus 154 ---~-~fD~v--~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 199 (318)
T 2fk8_A 154 ---E-PVDRI--VSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYH 199 (318)
T ss_dssp ---C-CCSEE--EEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred ---C-CcCEE--EEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence 1 11111 111111112 22338899999999999999999887643
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.73 E-value=4.2e-08 Score=86.70 Aligned_cols=115 Identities=15% Similarity=-0.004 Sum_probs=78.3
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee---------ee
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV---------VY 231 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~---------lD 231 (355)
.+.+|.+|||+|||+|..+..++... .++|+++|+++.++ +++++. . .+. ++.++..|+.. +|
T Consensus 46 ~~~~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~--~--~~~-~~~~~~~d~~~~~~~~D~v~~~ 119 (207)
T 1wy7_A 46 GDIEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLG--E--FKG-KFKVFIGDVSEFNSRVDIVIMN 119 (207)
T ss_dssp TSSTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTG--G--GTT-SEEEEESCGGGCCCCCSEEEEC
T ss_pred CCCCcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHH--H--cCC-CEEEEECchHHcCCCCCEEEEc
Confidence 46689999999999999999998873 35899999999999 788877 3 233 67777776643 55
Q ss_pred cccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceEEE
Q psy7769 232 STCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEI 308 (355)
Q Consensus 232 aPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~ 308 (355)
+|+.. +... ....+|+.+.+.+ || +|+.| +.+.++.+.+.+++++ .|++++.
T Consensus 120 ~p~~~----------~~~~------~~~~~l~~~~~~l--~~--~~~~~-~~~~~~~~~~~~~l~~----~g~~~~~ 171 (207)
T 1wy7_A 120 PPFGS----------QRKH------ADRPFLLKAFEIS--DV--VYSIH-LAKPEVRRFIEKFSWE----HGFVVTH 171 (207)
T ss_dssp CCCSS----------SSTT------TTHHHHHHHHHHC--SE--EEEEE-ECCHHHHHHHHHHHHH----TTEEEEE
T ss_pred CCCcc----------ccCC------chHHHHHHHHHhc--Cc--EEEEE-eCCcCCHHHHHHHHHH----CCCeEEE
Confidence 55411 1110 0115688888887 43 67777 3345667777777764 4544443
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.73 E-value=1.8e-08 Score=93.33 Aligned_cols=114 Identities=16% Similarity=0.029 Sum_probs=80.5
Q ss_pred hcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhcccccccc-C--cceEEEEEecc
Q psy7769 154 ASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVL-D--IHALKLVKVGG 227 (355)
Q Consensus 154 aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~-g--~~~v~~~~~Da 227 (355)
.....+..+++.+|++|||+|||+|..+.+++...+ .++|+++|+++.++ +++++. . . + ..++.+...|+
T Consensus 87 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~--~--~~g~~~~~v~~~~~d~ 162 (280)
T 1i9g_A 87 DAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVS--G--CYGQPPDNWRLVVSDL 162 (280)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHH--H--HHTSCCTTEEEECSCG
T ss_pred HHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH--H--hcCCCCCcEEEEECch
Confidence 345666777899999999999999999999998653 58999999999999 777776 3 2 3 35688888887
Q ss_pred eeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 228 SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 228 ~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
.....+- + ..+.-+. . .....++|.++.++|+|||++++++++.
T Consensus 163 ~~~~~~~---~-~~D~v~~-~------~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 206 (280)
T 1i9g_A 163 ADSELPD---G-SVDRAVL-D------MLAPWEVLDAVSRLLVAGGVLMVYVATV 206 (280)
T ss_dssp GGCCCCT---T-CEEEEEE-E------SSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred HhcCCCC---C-ceeEEEE-C------CcCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 5421110 0 0010000 0 0011156999999999999999988765
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=98.72 E-value=8.1e-08 Score=87.01 Aligned_cols=102 Identities=14% Similarity=0.043 Sum_probs=71.9
Q ss_pred hCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee----eecccC
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV----VYSTCS 235 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~----lDaPCS 235 (355)
+.+.+|++|||+|||+|..+.+++...+.++|+++|+++.++ ++++++ . . .++.++..|+.. .+.+
T Consensus 70 ~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~--~---~-~~v~~~~~d~~~~~~~~~~~-- 141 (230)
T 1fbn_A 70 MPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACA--E---R-ENIIPILGDANKPQEYANIV-- 141 (230)
T ss_dssp CCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTT--T---C-TTEEEEECCTTCGGGGTTTS--
T ss_pred cCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhh--c---C-CCeEEEECCCCCcccccccC--
Confidence 346789999999999999999999886568999999999999 777776 3 2 578888888754 2111
Q ss_pred CCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE
Q psy7769 236 LSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 236 gsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs 278 (355)
+ ..+--++.-+ .....+.+|+++.++|||||+++.+
T Consensus 142 --~-~~D~v~~~~~----~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 142 --E-KVDVIYEDVA----QPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp --C-CEEEEEECCC----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred --c-cEEEEEEecC----ChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 0 1010011000 0001126799999999999999987
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.5e-08 Score=90.36 Aligned_cols=108 Identities=13% Similarity=0.008 Sum_probs=70.4
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc--ceEEEEEecceeeecccCCCCCcc
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI--HALKLVKVGGSVVYSTCSLSPIQN 241 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~--~~v~~~~~Da~~lDaPCSgsG~t~ 241 (355)
+|.+|||+|||+|..+..++... .+.|+++|+|+.++ +++|++ . .+. .++.++.+|+........ .+ .
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~--~--~~~~~~~v~~~~~d~~~~~~~~~-~~-~- 124 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQ--T--LKCSSEQAEVINQSSLDFLKQPQ-NQ-P- 124 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHH--H--TTCCTTTEEEECSCHHHHTTSCC-SS-C-
T ss_pred CCCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHH--H--hCCCccceEEEECCHHHHHHhhc-cC-C-
Confidence 78899999999999999877664 36899999999999 888887 3 344 578888877643211100 00 0
Q ss_pred CCc-cccchHHHHhhhhHHHHHHHH--HhhccCCcEEEEEeCCCC
Q psy7769 242 DGV-VHMSLKRIWEETGCEIEIKHA--LKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 242 ~~~-l~~~~~~l~~l~~lQ~lL~~A--~~~LkpGG~lVYsTCSl~ 283 (355)
.-+ +...+- . .....++++..+ .++|||||.+++++|+..
T Consensus 125 ~fD~I~~~~~-~-~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 125 HFDVVFLDPP-F-HFNLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp CEEEEEECCC-S-SSCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred CCCEEEECCC-C-CCccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 001 000000 0 001122556666 678999999999999875
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.5e-08 Score=90.34 Aligned_cols=95 Identities=15% Similarity=-0.008 Sum_probs=68.4
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-------------e
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV-------------V 230 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~-------------l 230 (355)
+|.+|||+|||+|..+..++... ..+|+++|+++.++ +++|++ . .+..++.+++.|+.. +
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~-~~~V~~vD~s~~~l~~a~~~~~--~--~~~~~v~~~~~D~~~~~~~~~~~fD~V~~ 128 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLA--T--LKAGNARVVNSNAMSFLAQKGTPHNIVFV 128 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHH--H--TTCCSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHhcC-CCEEEEEECCHHHHHHHHHHHH--H--cCCCcEEEEECCHHHHHhhcCCCCCEEEE
Confidence 78899999999999999877764 25899999999999 888887 3 344578888877643 2
Q ss_pred ecccCCCCCccCCccccchHHHHhhhhHHHHHHHHH--hhccCCcEEEEEeCCCCC
Q psy7769 231 YSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHAL--KLVKVGGSVVYSTCSLSP 284 (355)
Q Consensus 231 DaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~--~~LkpGG~lVYsTCSl~~ 284 (355)
|+|. .. ....++++... ++|+|||.+++++|+...
T Consensus 129 ~~p~-------------~~------~~~~~~l~~l~~~~~L~pgG~l~i~~~~~~~ 165 (202)
T 2fpo_A 129 DPPF-------------RR------GLLEETINLLEDNGWLADEALIYVESEVENG 165 (202)
T ss_dssp CCSS-------------ST------TTHHHHHHHHHHTTCEEEEEEEEEEEEGGGC
T ss_pred CCCC-------------CC------CcHHHHHHHHHhcCccCCCcEEEEEECCCcc
Confidence 2221 10 01114455554 469999999999998654
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=3e-08 Score=89.07 Aligned_cols=120 Identities=13% Similarity=0.054 Sum_probs=78.2
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceee
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVV 230 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~l 230 (355)
..+...++...++.+|||+|||+|..+..++..+. .++|+++|+++.++ ++++++ . .+. .++.++.+|+...
T Consensus 58 ~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~--~--~g~~~~i~~~~~d~~~~ 133 (229)
T 2avd_A 58 AQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWR--Q--AEAEHKIDLRLKPALET 133 (229)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHH--H--TTCTTTEEEEESCHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH--H--CCCCCeEEEEEcCHHHH
Confidence 34445555667888999999999999999998765 58999999999999 777876 3 243 4688888886431
Q ss_pred ecccCCCCCccCCcccc-chHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 231 YSTCSLSPIQNDGVVHM-SLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 231 DaPCSgsG~t~~~~l~~-~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
-......|....-++.+ ... ......+++.+.++|+|||.+++..+..
T Consensus 134 ~~~~~~~~~~~~~D~v~~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 182 (229)
T 2avd_A 134 LDELLAAGEAGTFDVAVVDAD----KENCSAYYERCLQLLRPGGILAVLRVLW 182 (229)
T ss_dssp HHHHHHTTCTTCEEEEEECSC----STTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred HHHHHhcCCCCCccEEEECCC----HHHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 00000000000001111 100 0111267999999999999999987654
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.71 E-value=4.4e-09 Score=100.20 Aligned_cols=128 Identities=13% Similarity=0.046 Sum_probs=80.8
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEe
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKV 225 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~ 225 (355)
|..++......+..+++.+|++|||+|||+|..|..+++.. ++|+|+|+++.++ +++++. . .+..++.++.+
T Consensus 24 fl~~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~--~~v~~vDi~~~~~~~a~~~~~--~--~~~~~v~~~~~ 97 (299)
T 2h1r_A 24 LLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLA--KKVITIDIDSRMISEVKKRCL--Y--EGYNNLEVYEG 97 (299)
T ss_dssp EECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTS--SEEEEECSCHHHHHHHHHHHH--H--TTCCCEEC---
T ss_pred eecCHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHH--H--cCCCceEEEEC
Confidence 44455666677788889999999999999999999998763 7999999999999 777775 2 24467888888
Q ss_pred cceeeecccCCCCCccCCccccchHHHHhhhhHH-H--------HHHHHHhhccCCcEEEEEeCCC
Q psy7769 226 GGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCE-I--------EIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 226 Da~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~--------lL~~A~~~LkpGG~lVYsTCSl 282 (355)
|+..++.+. -..+.......|....+..+...+ . -.+.|.++++++|...|+|||+
T Consensus 98 D~~~~~~~~-~D~Vv~n~py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G~~~y~~ls~ 162 (299)
T 2h1r_A 98 DAIKTVFPK-FDVCTANIPYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVGDSNYSRLTI 162 (299)
T ss_dssp -CCSSCCCC-CSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTTSTTCCHHHH
T ss_pred chhhCCccc-CCEEEEcCCcccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCCCcchhHHHH
Confidence 875533220 000000000112222222111100 0 0156889999999999999987
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.6e-08 Score=92.92 Aligned_cols=127 Identities=9% Similarity=-0.062 Sum_probs=79.0
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccc--cccCcceEEEEEeccee-eecccCCCC
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYD--TVLDIHALKLVKVGGSV-VYSTCSLSP 238 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~--~~~g~~~v~~~~~Da~~-lDaPCSgsG 238 (355)
..++.+|||+|||+|..+..+|.......|+|+|+++.++ ++++++.++ ...+..|+.++.+|+.. ++... ..|
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~-~~~ 122 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFF-YKG 122 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHC-CTT
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhC-CCc
Confidence 4567799999999999999999877667899999999999 665554110 00234679999999864 32100 011
Q ss_pred CccCCc-cc----cchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 239 IQNDGV-VH----MSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 239 ~t~~~~-l~----~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
+.+.. +. |...+-......+ .+|+.+.++|||||.|+++|+ ++..+.++++..
T Consensus 123 -~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td------~~~~~~~~~~~l 181 (235)
T 3ckk_A 123 -QLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD------VLELHDWMCTHF 181 (235)
T ss_dssp -CEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES------CHHHHHHHHHHH
T ss_pred -CeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC------CHHHHHHHHHHH
Confidence 11111 11 2111111111112 789999999999999999986 456666665543
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=3.5e-08 Score=85.99 Aligned_cols=114 Identities=11% Similarity=-0.045 Sum_probs=76.5
Q ss_pred hhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceee
Q psy7769 153 GASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVV 230 (355)
Q Consensus 153 ~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~l 230 (355)
.........+...++.+|||+|||+|..+..++.. ..+|+++|+++.++ +++++. . .+..++.+...|...+
T Consensus 19 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~--~--~~~~~~~~~~~d~~~~ 92 (199)
T 2xvm_A 19 RTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKS--I--ENLDNLHTRVVDLNNL 92 (199)
T ss_dssp CCCHHHHHHTTTSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHH--H--HTCTTEEEEECCGGGC
T ss_pred cccHHHHHHhhccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHH--h--CCCCCcEEEEcchhhC
Confidence 33445566677778899999999999999999887 36999999999999 777765 2 2444688888887543
Q ss_pred ecccCCCCCccCCccccchHHHHhhh--hHHHHHHHHHhhccCCcEEEEEe
Q psy7769 231 YSTCSLSPIQNDGVVHMSLKRIWEET--GCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 231 DaPCSgsG~t~~~~l~~~~~~l~~l~--~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
+.+ + .. ++.+...-+..+. ....+|+++.++|||||.+++.+
T Consensus 93 ~~~----~-~~--D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (199)
T 2xvm_A 93 TFD----R-QY--DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 136 (199)
T ss_dssp CCC----C-CE--EEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCC----C-Cc--eEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 210 1 10 1000000011111 22378999999999999987754
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=98.71 E-value=1.4e-08 Score=94.88 Aligned_cols=118 Identities=15% Similarity=0.066 Sum_probs=81.8
Q ss_pred chhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCC-CcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce
Q psy7769 152 DGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYP-DYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS 228 (355)
Q Consensus 152 D~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~-g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~ 228 (355)
+..+.+.-.++.+.++.+|||+|||+|..+..++...+. .+|+++|+++.++ +++++. . .+ .++.+...|+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~--~--~~-~~v~~~~~d~~ 82 (284)
T 3gu3_A 8 DYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFR--L--LP-YDSEFLEGDAT 82 (284)
T ss_dssp HHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHH--S--SS-SEEEEEESCTT
T ss_pred HHHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH--h--cC-CceEEEEcchh
Confidence 334445555567788999999999999999999987653 7999999999999 777766 2 22 27889998876
Q ss_pred eeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 229 VVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 229 ~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
.+..+ + +. ++.+...-+......+.+|+++.++|||||.++..+..
T Consensus 83 ~~~~~----~-~f--D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 83 EIELN----D-KY--DIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp TCCCS----S-CE--EEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hcCcC----C-Ce--eEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 42211 1 11 11111111122223347899999999999999988776
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=4.1e-08 Score=93.75 Aligned_cols=109 Identities=15% Similarity=0.004 Sum_probs=78.3
Q ss_pred echhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc
Q psy7769 151 MDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG 227 (355)
Q Consensus 151 QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da 227 (355)
|..-.......+++++|++|||+|||+|..+..+++... .++|+++|+++.++ ++++++ . .+..++.+...|+
T Consensus 60 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~--~--~g~~~v~~~~~d~ 135 (317)
T 1dl5_A 60 QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVE--R--LGIENVIFVCGDG 135 (317)
T ss_dssp CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHH--H--TTCCSEEEEESCG
T ss_pred CHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHH--H--cCCCCeEEEECCh
Confidence 334445566677889999999999999999999998875 37899999999999 777876 3 3556688888887
Q ss_pred ee-------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 228 SV-------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 228 ~~-------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
.. .|.-.+..+ +. .+...+.+.|||||+++.+..+.
T Consensus 136 ~~~~~~~~~fD~Iv~~~~------~~-------------~~~~~~~~~LkpgG~lvi~~~~~ 178 (317)
T 1dl5_A 136 YYGVPEFSPYDVIFVTVG------VD-------------EVPETWFTQLKEGGRVIVPINLK 178 (317)
T ss_dssp GGCCGGGCCEEEEEECSB------BS-------------CCCHHHHHHEEEEEEEEEEBCBG
T ss_pred hhccccCCCeEEEEEcCC------HH-------------HHHHHHHHhcCCCcEEEEEECCC
Confidence 54 222221111 00 11245677999999999985443
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=4.4e-08 Score=91.12 Aligned_cols=110 Identities=14% Similarity=0.080 Sum_probs=77.4
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccC
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCS 235 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCS 235 (355)
...+.+.+|.+|||+|||+|..+..+++..+ .+|+++|+++.++ +++++. . .+. .++.+...|...+ |
T Consensus 57 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~--~--~~~~~~~~~~~~d~~~~--~-- 127 (287)
T 1kpg_A 57 LGKLGLQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVA--N--SENLRSKRVLLAGWEQF--D-- 127 (287)
T ss_dssp HTTTTCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHH--T--CCCCSCEEEEESCGGGC--C--
T ss_pred HHHcCCCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHH--h--cCCCCCeEEEECChhhC--C--
Confidence 4455678999999999999999999996553 5999999999999 777776 2 233 4688888887532 2
Q ss_pred CCCCccCCccccchHHHHhh--hhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 236 LSPIQNDGVVHMSLKRIWEE--TGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 236 gsG~t~~~~l~~~~~~l~~l--~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
+ +.+.- +...-+..+ .....+|+++.++|||||+++.++...
T Consensus 128 --~-~fD~v--~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 171 (287)
T 1kpg_A 128 --E-PVDRI--VSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITG 171 (287)
T ss_dssp --C-CCSEE--EEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred --C-CeeEE--EEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 1 11111 111112222 123378999999999999999988765
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.68 E-value=8.3e-08 Score=82.14 Aligned_cols=133 Identities=14% Similarity=0.102 Sum_probs=87.7
Q ss_pred hhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceee
Q psy7769 153 GASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVV 230 (355)
Q Consensus 153 ~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~l 230 (355)
.-.......+.+.++.+|||+|||+|..+..++. ...+|+++|+++.++ +++++. . .+..++.+...|...
T Consensus 22 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~--~--~~~~~~~~~~~d~~~- 94 (183)
T 2yxd_A 22 EIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLA--K--FNIKNCQIIKGRAED- 94 (183)
T ss_dssp HHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHH--H--TTCCSEEEEESCHHH-
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHH--H--cCCCcEEEEECCccc-
Confidence 3344555666788999999999999999999988 457999999999999 778877 3 344678888888754
Q ss_pred ecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceEEEec
Q psy7769 231 YSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKD 310 (355)
Q Consensus 231 DaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~~~ 310 (355)
..|- + ..+--+.... .....+++.+.++ |||.+++++|+. ++-..+...+++ .|+.++.+.
T Consensus 95 ~~~~---~-~~D~i~~~~~------~~~~~~l~~~~~~--~gG~l~~~~~~~---~~~~~~~~~l~~----~g~~~~~~~ 155 (183)
T 2yxd_A 95 VLDK---L-EFNKAFIGGT------KNIEKIIEILDKK--KINHIVANTIVL---ENAAKIINEFES----RGYNVDAVN 155 (183)
T ss_dssp HGGG---C-CCSEEEECSC------SCHHHHHHHHHHT--TCCEEEEEESCH---HHHHHHHHHHHH----TTCEEEEEE
T ss_pred cccC---C-CCcEEEECCc------ccHHHHHHHHhhC--CCCEEEEEeccc---ccHHHHHHHHHH----cCCeEEEEE
Confidence 1111 0 0000010111 1223778888887 999999999875 233334444543 456666554
Q ss_pred c
Q psy7769 311 L 311 (355)
Q Consensus 311 l 311 (355)
.
T Consensus 156 ~ 156 (183)
T 2yxd_A 156 V 156 (183)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.68 E-value=4.6e-08 Score=90.90 Aligned_cols=124 Identities=10% Similarity=0.019 Sum_probs=78.5
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEeccee--
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSV-- 229 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~-- 229 (355)
+.+.+..+.+.++.+|||+|||+|..+..++.......|+++|+++.++ +++|+..+.. .+. .++.+++.|...
T Consensus 25 ~~lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~-~~l~~~v~~~~~D~~~~~ 103 (260)
T 2ozv_A 25 AMLLASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDN-AAFSARIEVLEADVTLRA 103 (260)
T ss_dssp HHHHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGG-TTTGGGEEEEECCTTCCH
T ss_pred HHHHHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhh-CCCcceEEEEeCCHHHHh
Confidence 6677777788889999999999999999999987667999999999999 8888872000 122 357777777543
Q ss_pred -----------------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 230 -----------------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 230 -----------------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
.++|....+-....+......+......+..+++.+.++|||||++++..
T Consensus 104 ~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 104 KARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp HHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 33333211100000000000000001123388999999999999999854
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.8e-08 Score=86.61 Aligned_cols=121 Identities=9% Similarity=0.038 Sum_probs=76.8
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeee-------ccc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVY-------STC 234 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lD-------aPC 234 (355)
+.++.+|||+|||+|..+..++.... ..|+++|+++.++ +++++. . ..++.+...|+..++ ...
T Consensus 40 ~~~~~~vLdiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~~~~a~~~~~--~----~~~i~~~~~d~~~~~~~~~~fD~v~ 112 (215)
T 2pxx_A 40 LRPEDRILVLGCGNSALSYELFLGGF-PNVTSVDYSSVVVAAMQACYA--H----VPQLRWETMDVRKLDFPSASFDVVL 112 (215)
T ss_dssp CCTTCCEEEETCTTCSHHHHHHHTTC-CCEEEEESCHHHHHHHHHHTT--T----CTTCEEEECCTTSCCSCSSCEEEEE
T ss_pred cCCCCeEEEECCCCcHHHHHHHHcCC-CcEEEEeCCHHHHHHHHHhcc--c----CCCcEEEEcchhcCCCCCCcccEEE
Confidence 47889999999999999999988743 3899999999999 666665 2 235677777765432 111
Q ss_pred CCCCC--ccCCc-cccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 235 SLSPI--QNDGV-VHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 235 SgsG~--t~~~~-l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
+.... ....+ ..|... ........++|+++.++|||||++++++.+. ......++..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~-----~~~~~~~~~~ 172 (215)
T 2pxx_A 113 EKGTLDALLAGERDPWTVS-SEGVHTVDQVLSEVSRVLVPGGRFISMTSAA-----PHFRTRHYAQ 172 (215)
T ss_dssp EESHHHHHTTTCSCTTSCC-HHHHHHHHHHHHHHHHHEEEEEEEEEEESCC-----HHHHHHHHCC
T ss_pred ECcchhhhccccccccccc-cchhHHHHHHHHHHHHhCcCCCEEEEEeCCC-----cHHHHHHHhc
Confidence 00000 00000 012110 0111223389999999999999999998764 3344455543
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.67 E-value=2e-08 Score=88.62 Aligned_cols=101 Identities=12% Similarity=-0.017 Sum_probs=73.0
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccCC
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDG 243 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~~ 243 (355)
++.+|||+|||+|..+..++...+..+|+++|+++.++ +++++. . .+..++.+...|.....++ + . -
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--~--~~~~~v~~~~~d~~~~~~~----~-~--~ 133 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQH--E--LKLENIEPVQSRVEEFPSE----P-P--F 133 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHH--H--TTCSSEEEEECCTTTSCCC----S-C--E
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH--H--cCCCCeEEEecchhhCCcc----C-C--c
Confidence 58899999999999999999876668999999999999 778877 3 3555688888887542211 0 0 0
Q ss_pred ccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 244 VVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 244 ~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
++.+.. .......++..+.++|+|||.++.....
T Consensus 134 D~i~~~----~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 167 (207)
T 1jsx_A 134 DGVISR----AFASLNDMVSWCHHLPGEQGRFYALKGQ 167 (207)
T ss_dssp EEEECS----CSSSHHHHHHHHTTSEEEEEEEEEEESS
T ss_pred CEEEEe----ccCCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 111100 0112237899999999999999997654
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.67 E-value=3.3e-08 Score=88.94 Aligned_cols=107 Identities=11% Similarity=0.058 Sum_probs=77.0
Q ss_pred EEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEec
Q psy7769 149 YCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVG 226 (355)
Q Consensus 149 ~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~D 226 (355)
+.+..........+.+.++.+|||+|||+|..+..++... ++|+++|+++.++ +++++. . .+ ++.+...|
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~--~--~~--~v~~~~~d 124 (231)
T 1vbf_A 53 TTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLS--Y--YN--NIKLILGD 124 (231)
T ss_dssp ECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHT--T--CS--SEEEEESC
T ss_pred cCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHh--h--cC--CeEEEECC
Confidence 3344444456667788899999999999999999999876 7999999999999 777777 3 23 68888888
Q ss_pred cee-------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 227 GSV-------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 227 a~~-------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
+.. .|.-.+..+ +. .+...+.+.|||||++++++.+-
T Consensus 125 ~~~~~~~~~~fD~v~~~~~------~~-------------~~~~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 125 GTLGYEEEKPYDRVVVWAT------AP-------------TLLCKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp GGGCCGGGCCEEEEEESSB------BS-------------SCCHHHHHTEEEEEEEEEEECSS
T ss_pred cccccccCCCccEEEECCc------HH-------------HHHHHHHHHcCCCcEEEEEEcCC
Confidence 753 222111110 00 12346788999999999997654
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.67 E-value=6.4e-08 Score=90.13 Aligned_cols=111 Identities=6% Similarity=-0.036 Sum_probs=84.5
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEeccee-------eec
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSV-------VYS 232 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~-------lDa 232 (355)
-+.+|++|||+|||+|..++.++.....++|+|+|+++..+ +++|++ . .|. .+|.+..+|+.. +|+
T Consensus 18 ~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~--~--~gl~~~I~v~~gD~l~~~~~~~~~D~ 93 (244)
T 3gnl_A 18 YITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVR--S--SGLTEQIDVRKGNGLAVIEKKDAIDT 93 (244)
T ss_dssp TCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHH--H--TTCTTTEEEEECSGGGGCCGGGCCCE
T ss_pred hCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH--H--cCCCceEEEEecchhhccCccccccE
Confidence 35689999999999999999999876557899999999999 899998 3 355 358999999753 222
Q ss_pred cc-CCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 233 TC-SLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 233 PC-SgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
-. .|.| .+ .+.+||..+...|+++|++|.+.- .+...|..+|.++
T Consensus 94 IviagmG----------g~------lI~~IL~~~~~~L~~~~~lIlq~~-----~~~~~lr~~L~~~ 139 (244)
T 3gnl_A 94 IVIAGMG----------GT------LIRTILEEGAAKLAGVTKLILQPN-----IAAWQLREWSEQN 139 (244)
T ss_dssp EEEEEEC----------HH------HHHHHHHHTGGGGTTCCEEEEEES-----SCHHHHHHHHHHH
T ss_pred EEEeCCc----------hH------HHHHHHHHHHHHhCCCCEEEEEcC-----CChHHHHHHHHHC
Confidence 21 1111 01 112899999999999999998763 4788888888864
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.66 E-value=5.1e-08 Score=88.88 Aligned_cols=108 Identities=14% Similarity=-0.079 Sum_probs=73.2
Q ss_pred HhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCC
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLS 237 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgs 237 (355)
..+...++.+|||+|||+|..+..++.... ..|+++|+++.++ +++++. ..++.+...|...++.+-
T Consensus 38 ~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~~~~~~--- 106 (253)
T 3g5l_A 38 KMLPDFNQKTVLDLGCGFGWHCIYAAEHGA-KKVLGIDLSERMLTEAKRKTT-------SPVVCYEQKAIEDIAIEP--- 106 (253)
T ss_dssp TTCCCCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHCC-------CTTEEEEECCGGGCCCCT---
T ss_pred HhhhccCCCEEEEECCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHhhc-------cCCeEEEEcchhhCCCCC---
Confidence 344556899999999999999999988752 3899999999999 555554 235788888875432211
Q ss_pred CCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 238 PIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 238 G~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
+ + -++.+...-+..+...+++|+++.++|||||.++.++.+
T Consensus 107 ~-~--fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 147 (253)
T 3g5l_A 107 D-A--YNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEH 147 (253)
T ss_dssp T-C--EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred C-C--eEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 0 0 011111111222233448899999999999999998643
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=3.1e-08 Score=89.94 Aligned_cols=108 Identities=11% Similarity=0.077 Sum_probs=78.2
Q ss_pred EechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc
Q psy7769 150 CMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG 227 (355)
Q Consensus 150 ~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da 227 (355)
.+..........+.+.+|++|||+|||+|..+..++...+ ++|+++|+++.++ +++++. . .+..++.+...|+
T Consensus 75 ~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~--~--~~~~~v~~~~~d~ 149 (235)
T 1jg1_A 75 SAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLE--R--AGVKNVHVILGDG 149 (235)
T ss_dssp CCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHH--H--TTCCSEEEEESCG
T ss_pred ccHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHH--H--cCCCCcEEEECCc
Confidence 3444445566677889999999999999999999998876 7999999999999 777776 3 3555688888886
Q ss_pred ee-------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 228 SV-------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 228 ~~-------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
.. .|.-.+..+ + +.+...+.+.|||||+++.++-.
T Consensus 150 ~~~~~~~~~fD~Ii~~~~------~-------------~~~~~~~~~~L~pgG~lvi~~~~ 191 (235)
T 1jg1_A 150 SKGFPPKAPYDVIIVTAG------A-------------PKIPEPLIEQLKIGGKLIIPVGS 191 (235)
T ss_dssp GGCCGGGCCEEEEEECSB------B-------------SSCCHHHHHTEEEEEEEEEEECS
T ss_pred ccCCCCCCCccEEEECCc------H-------------HHHHHHHHHhcCCCcEEEEEEec
Confidence 21 222221111 0 02234678899999999998754
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=7.3e-08 Score=85.14 Aligned_cols=104 Identities=12% Similarity=-0.094 Sum_probs=72.8
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh-HHhhccccccccCcceEEEEEecceee------e
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV-LALNIRPYDTVLDIHALKLVKVGGSVV------Y 231 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl-l~~~l~r~~~~~g~~~v~~~~~Da~~l------D 231 (355)
..+....++.+|||+|||+|..+..++... .+|+++|+++.++ ..+. . +..++.++..|...+ |
T Consensus 39 ~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~-~------~~~~~~~~~~d~~~~~~~~~~D 109 (218)
T 3ou2_A 39 ERLRAGNIRGDVLELASGTGYWTRHLSGLA--DRVTALDGSAEMIAEAGR-H------GLDNVEFRQQDLFDWTPDRQWD 109 (218)
T ss_dssp HHHTTTTSCSEEEEESCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHGG-G------CCTTEEEEECCTTSCCCSSCEE
T ss_pred HHHhcCCCCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHh-c------CCCCeEEEecccccCCCCCcee
Confidence 333347788899999999999999999873 6999999999998 3222 2 234678888887543 2
Q ss_pred cccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 232 STCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 232 aPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
.-.+... +.+-++ ..+..+|+++.++|||||.+++++.+.
T Consensus 110 ~v~~~~~------l~~~~~-----~~~~~~l~~~~~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 110 AVFFAHW------LAHVPD-----DRFEAFWESVRSAVAPGGVVEFVDVTD 149 (218)
T ss_dssp EEEEESC------GGGSCH-----HHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred EEEEech------hhcCCH-----HHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 2221111 111111 012378999999999999999998876
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.66 E-value=9.3e-08 Score=85.96 Aligned_cols=103 Identities=16% Similarity=0.052 Sum_probs=71.0
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeec--ccCCCC
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYS--TCSLSP 238 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDa--PCSgsG 238 (355)
+.+|++|||+|||+|..+..++...+ .++|+++|+++.++ ++++++ . . .++.++..|+...+. +.. +
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~--~--~--~~v~~~~~d~~~~~~~~~~~--~ 142 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVE--E--R--RNIVPILGDATKPEEYRALV--P 142 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHS--S--C--TTEEEEECCTTCGGGGTTTC--C
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHh--c--c--CCCEEEEccCCCcchhhccc--C
Confidence 67899999999999999999998764 48999999999998 777776 3 1 568888888754221 110 0
Q ss_pred CccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeC
Q psy7769 239 IQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 239 ~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTC 280 (355)
+.+.-+...+ ..... .++.++.++|||||+++++.+
T Consensus 143 -~~D~v~~~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~ 179 (227)
T 1g8a_A 143 -KVDVIFEDVA-----QPTQAKILIDNAEVYLKRGGYGMIAVK 179 (227)
T ss_dssp -CEEEEEECCC-----STTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -CceEEEECCC-----CHhHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 0000010000 01111 459999999999999999843
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.65 E-value=7.9e-08 Score=86.50 Aligned_cols=110 Identities=12% Similarity=-0.084 Sum_probs=74.5
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeeccc
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTC 234 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPC 234 (355)
.....+...++.+|||+|||+|..+..++... ..+|+++|+++.++ ++++.. . .++.+...|...++.+-
T Consensus 34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~--~-----~~~~~~~~d~~~~~~~~ 105 (243)
T 3bkw_A 34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKMLARARAAGP--D-----TGITYERADLDKLHLPQ 105 (243)
T ss_dssp HHHHHSCCCTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTSC--S-----SSEEEEECCGGGCCCCT
T ss_pred HHHHhccccCCCEEEEEcCcCCHHHHHHHHCC-CCeEEEEcCCHHHHHHHHHhcc--c-----CCceEEEcChhhccCCC
Confidence 34556666789999999999999999998873 24899999999999 666655 2 25778888875432110
Q ss_pred CCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 235 SLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 235 SgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
+ .-++.+...-+........+|+++.++|||||++++++.
T Consensus 106 ---~---~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 106 ---D---SFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp ---T---CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---C---CceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeC
Confidence 0 001111111122222334889999999999999999873
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.9e-08 Score=92.37 Aligned_cols=115 Identities=10% Similarity=-0.037 Sum_probs=76.7
Q ss_pred CCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCC-
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPI- 239 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~- 239 (355)
..++.+|||+|||+|..+..+++.. ...+|+++|+++.++ ++++++ .......++.++..|+..++.+-. .++
T Consensus 34 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~--~~~~~~~~v~~~~~d~~~~~~~~~-~~~~ 110 (299)
T 3g5t_A 34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKE--GSPDTYKNVSFKISSSDDFKFLGA-DSVD 110 (299)
T ss_dssp CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHH--HCC-CCTTEEEEECCTTCCGGGCT-TTTT
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHH--hccCCCCceEEEEcCHHhCCcccc-cccc
Confidence 4589999999999999999999865 568999999999999 777766 210123578999999865433210 000
Q ss_pred ccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 240 QNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 240 t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
...-++.+...-+..+ ....+|.++.++|||||.|++.+++.
T Consensus 111 ~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~ 152 (299)
T 3g5t_A 111 KQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIWGYAD 152 (299)
T ss_dssp SSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred CCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 0011111111112222 33488999999999999999866553
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.6e-08 Score=87.71 Aligned_cols=105 Identities=11% Similarity=0.068 Sum_probs=75.5
Q ss_pred hcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-
Q psy7769 154 ASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV- 229 (355)
Q Consensus 154 aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~- 229 (355)
........+.+.+|.+|||+|||+|..+..++...+ .++|+++|+++.++ +++++. . .+..++.+...|+..
T Consensus 65 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~--~--~~~~~v~~~~~d~~~~ 140 (215)
T 2yxe_A 65 MVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLR--K--LGYDNVIVIVGDGTLG 140 (215)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHH--H--HTCTTEEEEESCGGGC
T ss_pred HHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH--H--cCCCCeEEEECCcccC
Confidence 334555667888999999999999999999998873 37999999999999 777776 3 345568888888632
Q ss_pred ------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 230 ------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 230 ------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
.|.-.+..+ +. .+...+.++|||||+++.++.+
T Consensus 141 ~~~~~~fD~v~~~~~------~~-------------~~~~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 141 YEPLAPYDRIYTTAA------GP-------------KIPEPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp CGGGCCEEEEEESSB------BS-------------SCCHHHHHTEEEEEEEEEEESS
T ss_pred CCCCCCeeEEEECCc------hH-------------HHHHHHHHHcCCCcEEEEEECC
Confidence 222221111 00 1234778899999999998754
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.64 E-value=1.8e-08 Score=90.90 Aligned_cols=108 Identities=13% Similarity=0.068 Sum_probs=75.9
Q ss_pred echhcHHHHHhh--CCCCCCeEeeecccCcchHHHHHHhcC------CCcEEEEcCCchhh--HHhhccccccccC----
Q psy7769 151 MDGASLLPVLAL--NIRPYDTVLDMCAAPGGKTLVALQTLY------PDYYCMDGASLLPV--LALNIRPYDTVLD---- 216 (355)
Q Consensus 151 QD~aS~l~~~~L--~~~pG~~VLD~CAgPGgKT~~la~~~~------~g~V~AvD~s~~Rl--l~~~l~r~~~~~g---- 216 (355)
|..........| .+++|++|||+|||+|..+..+++..+ .++|+++|+++.++ +++++. . .+
T Consensus 67 ~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~--~--~~~~~~ 142 (227)
T 1r18_A 67 APHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLN--T--DDRSML 142 (227)
T ss_dssp CHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHH--H--HHHHHH
T ss_pred ChHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHH--h--cCcccc
Confidence 333334445555 578999999999999999999998654 36999999999999 777776 3 23
Q ss_pred -cceEEEEEeccee-------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 217 -IHALKLVKVGGSV-------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 217 -~~~v~~~~~Da~~-------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
..++.+...|+.. .|.-.+..+ +..+++++.+.|||||+++.++-.
T Consensus 143 ~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~-------------------~~~~~~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 143 DSGQLLIVEGDGRKGYPPNAPYNAIHVGAA-------------------APDTPTELINQLASGGRLIVPVGP 196 (227)
T ss_dssp HHTSEEEEESCGGGCCGGGCSEEEEEECSC-------------------BSSCCHHHHHTEEEEEEEEEEESC
T ss_pred CCCceEEEECCcccCCCcCCCccEEEECCc-------------------hHHHHHHHHHHhcCCCEEEEEEec
Confidence 4578888888753 222211111 002356788999999999998654
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=98.63 E-value=7.7e-08 Score=87.59 Aligned_cols=103 Identities=11% Similarity=0.031 Sum_probs=70.8
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCc
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQ 240 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t 240 (355)
.+.++.+|||+|||+|..+..++... +.|+++|+++.++ +++++. .+..++.+...|+..+..+- + +
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~~~~d~~~~~~~~---~-~ 104 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIARG--YRYIALDADAAMLEVFRQKIA-----GVDRKVQVVQADARAIPLPD---E-S 104 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTTT--CEEEEEESCHHHHHHHHHHTT-----TSCTTEEEEESCTTSCCSCT---T-C
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHhh-----ccCCceEEEEcccccCCCCC---C-C
Confidence 56789999999999999999998763 7899999999999 666663 23356888888875432110 0 0
Q ss_pred cCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE
Q psy7769 241 NDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 241 ~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs 278 (355)
-++.+...-+........+|+++.++|||||.++.+
T Consensus 105 --fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 105 --VHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp --EEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred --eeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence 011111011111122237899999999999999987
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.63 E-value=8.5e-08 Score=85.55 Aligned_cols=104 Identities=11% Similarity=0.027 Sum_probs=72.8
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-----ceEEEEEecceee------
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-----HALKLVKVGGSVV------ 230 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-----~~v~~~~~Da~~l------ 230 (355)
++++.+|||+|||+|..+..++... .+|+++|+++.++ +++++. . .+. .++.+...|...+
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~--~--~~~~~~~~~~~~~~~~d~~~~~~~~~~ 101 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASKG--YSVTGIDINSEAIRLAETAAR--S--PGLNQKTGGKAEFKVENASSLSFHDSS 101 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTT--C--CSCCSSSSCEEEEEECCTTSCCSCTTC
T ss_pred CCCCCeEEEECCCCCHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHH--h--cCCccccCcceEEEEecccccCCCCCc
Confidence 4578999999999999999998873 6999999999999 777776 2 222 3678888887542
Q ss_pred -ecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 231 -YSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 231 -DaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
|.-++... +.+-+ .......+|+.+.++|||||+++.++....
T Consensus 102 ~D~v~~~~~------l~~~~----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 145 (235)
T 3sm3_A 102 FDFAVMQAF------LTSVP----DPKERSRIIKEVFRVLKPGAYLYLVEFGQN 145 (235)
T ss_dssp EEEEEEESC------GGGCC----CHHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred eeEEEEcch------hhcCC----CHHHHHHHHHHHHHHcCCCeEEEEEECCcc
Confidence 22221110 11110 001112789999999999999999987653
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.63 E-value=9.1e-08 Score=86.81 Aligned_cols=109 Identities=11% Similarity=-0.083 Sum_probs=75.1
Q ss_pred HhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCC
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLS 237 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgs 237 (355)
..+...++.+|||+|||+|..+..++... ...|+++|+++.++ +++++. . . .++.+...|...++.+-
T Consensus 87 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~--~---~-~~~~~~~~d~~~~~~~~--- 156 (254)
T 1xtp_A 87 ASLPGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELA--G---M-PVGKFILASMETATLPP--- 156 (254)
T ss_dssp HTSTTCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTT--T---S-SEEEEEESCGGGCCCCS---
T ss_pred HhhcccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhc--c---C-CceEEEEccHHHCCCCC---
Confidence 34456788999999999999999998876 46799999999999 777766 2 1 56888888875432221
Q ss_pred CCccCCccccchHHHHhh--hhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 238 PIQNDGVVHMSLKRIWEE--TGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 238 G~t~~~~l~~~~~~l~~l--~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
+ .-++.+...-+..+ .....+|+++.++|||||++++++..
T Consensus 157 ~---~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 199 (254)
T 1xtp_A 157 N---TYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENC 199 (254)
T ss_dssp S---CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred C---CeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence 0 00111111112222 12238899999999999999999853
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.62 E-value=6.8e-08 Score=91.02 Aligned_cols=44 Identities=23% Similarity=0.076 Sum_probs=39.2
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
+|.+|||+|||+|..+..++...+..+|+++|+++.++ +++++.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~ 91 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIR 91 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHH
Confidence 68899999999999999999987668999999999999 777766
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=2e-08 Score=91.10 Aligned_cols=103 Identities=17% Similarity=0.062 Sum_probs=71.8
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceee---------ec
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVV---------YS 232 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~l---------Da 232 (355)
++++.+|||+|||+|..+..++... ..+|+++|+|+.++ ++++.+ . .+ .++.++.+|+..+ |.
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~--~--~~-~~v~~~~~d~~~~~~~~~~~~fD~ 131 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAP--R--QT-HKVIPLKGLWEDVAPTLPDGHFDG 131 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGG--G--CS-SEEEEEESCHHHHGGGSCTTCEEE
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcC-CCeEEEEcCCHHHHHHHHHHHH--h--cC-CCeEEEecCHHHhhcccCCCceEE
Confidence 5789999999999999999886643 24899999999999 777776 2 23 5788888886543 32
Q ss_pred ccC-CCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 233 TCS-LSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 233 PCS-gsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
..+ ..+. .... ........+++++.++|||||++++.+++
T Consensus 132 V~~d~~~~--------~~~~-~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 132 ILYDTYPL--------SEET-WHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp EEECCCCC--------BGGG-TTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred EEECCccc--------chhh-hhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 221 1110 0000 01112227799999999999999998765
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=5.7e-08 Score=88.00 Aligned_cols=69 Identities=14% Similarity=0.002 Sum_probs=55.5
Q ss_pred hcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecce
Q psy7769 154 ASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGS 228 (355)
Q Consensus 154 aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~ 228 (355)
+..++..+....+|.+|||+|||+|+.+..++... ++|+|+|+++.++ ++++++ . .+. .++.++.+|+.
T Consensus 66 ~~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~--~--~~~~~~~~~~~~d~~ 137 (241)
T 3gdh_A 66 AEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAE--V--YGIADKIEFICGDFL 137 (241)
T ss_dssp HHHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHH--H--TTCGGGEEEEESCHH
T ss_pred HHHHHHHhhhccCCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHH--H--cCCCcCeEEEECChH
Confidence 45555555566689999999999999999999875 8999999999999 888887 3 344 47888887764
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.62 E-value=9.7e-08 Score=86.57 Aligned_cols=102 Identities=14% Similarity=0.002 Sum_probs=72.9
Q ss_pred hhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceee--------
Q psy7769 161 ALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVV-------- 230 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~l-------- 230 (355)
...+.++.+|||+|||+|..+..++.... +|+++|+++.++ +++++. . .++.++..|...+
T Consensus 51 ~~~~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~--~-----~~~~~~~~d~~~~~~~~~~~~ 121 (245)
T 3ggd_A 51 ELLFNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENT--A-----ANISYRLLDGLVPEQAAQIHS 121 (245)
T ss_dssp TTTSCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSC--C-----TTEEEEECCTTCHHHHHHHHH
T ss_pred hhccCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCc--c-----cCceEEECccccccccccccc
Confidence 33467899999999999999999998763 899999999999 666554 1 3678888887652
Q ss_pred ----ecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 231 ----YSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 231 ----DaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
|.-++... +++-+. ...+.+|+++.+.|||||+++.+..+.
T Consensus 122 ~~~~d~v~~~~~------~~~~~~-----~~~~~~l~~~~~~LkpgG~l~i~~~~~ 166 (245)
T 3ggd_A 122 EIGDANIYMRTG------FHHIPV-----EKRELLGQSLRILLGKQGAMYLIELGT 166 (245)
T ss_dssp HHCSCEEEEESS------STTSCG-----GGHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred ccCccEEEEcch------hhcCCH-----HHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 22221110 111111 122378999999999999998887754
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.62 E-value=2.2e-08 Score=94.58 Aligned_cols=80 Identities=14% Similarity=0.017 Sum_probs=62.6
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEE
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVK 224 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~ 224 (355)
|..+.......+..+++.++++|||+|||+|..|..+++.. ++|+|+|+++.++ +++++. . .+. .+++++.
T Consensus 10 fl~d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~--~--~~~~~~v~~~~ 83 (285)
T 1zq9_A 10 ILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQ--G--TPVASKLQVLV 83 (285)
T ss_dssp EECCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHT--T--STTGGGEEEEE
T ss_pred ccCCHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHH--h--cCCCCceEEEE
Confidence 33344445566777888999999999999999999999875 6999999999999 777776 3 233 5789999
Q ss_pred ecceeeecc
Q psy7769 225 VGGSVVYST 233 (355)
Q Consensus 225 ~Da~~lDaP 233 (355)
+|+..++.|
T Consensus 84 ~D~~~~~~~ 92 (285)
T 1zq9_A 84 GDVLKTDLP 92 (285)
T ss_dssp SCTTTSCCC
T ss_pred cceecccch
Confidence 998654443
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.61 E-value=9.8e-08 Score=82.42 Aligned_cols=112 Identities=13% Similarity=0.058 Sum_probs=69.4
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccC-CCCC
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCS-LSPI 239 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCS-gsG~ 239 (355)
..++.+|||+|||+|..+..++.. +..+|+++|+++.++ +++++. . .+. .++.++..|+........ ..+
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~--~--~~~~~~~~~~~~d~~~~~~~~~~~~~- 115 (187)
T 2fhp_A 42 YFDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIA--I--TKEPEKFEVRKMDANRALEQFYEEKL- 115 (187)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHH--H--HTCGGGEEEEESCHHHHHHHHHHTTC-
T ss_pred hcCCCCEEEeCCccCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHH--H--hCCCcceEEEECcHHHHHHHHHhcCC-
Confidence 457899999999999999988874 336899999999999 777876 3 233 468888888643111000 000
Q ss_pred ccCCccccchHHHHhhhhHHHHHHH--HHhhccCCcEEEEEeCCCCC
Q psy7769 240 QNDGVVHMSLKRIWEETGCEIEIKH--ALKLVKVGGSVVYSTCSLSP 284 (355)
Q Consensus 240 t~~~~l~~~~~~l~~l~~lQ~lL~~--A~~~LkpGG~lVYsTCSl~~ 284 (355)
..+- +...+- . ........+.. +.++|+|||.+++++|+-..
T Consensus 116 ~fD~-i~~~~~-~-~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~ 159 (187)
T 2fhp_A 116 QFDL-VLLDPP-Y-AKQEIVSQLEKMLERQLLTNEAVIVCETDKTVK 159 (187)
T ss_dssp CEEE-EEECCC-G-GGCCHHHHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred CCCE-EEECCC-C-CchhHHHHHHHHHHhcccCCCCEEEEEeCCccc
Confidence 0000 000000 0 00011123333 38899999999999988754
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.3e-07 Score=92.51 Aligned_cols=122 Identities=8% Similarity=-0.016 Sum_probs=80.2
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccCCCCC-
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLSPI- 239 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG~- 239 (355)
+.+|.+|||+|||+|+.+..++.....++|+++|+++.++ +++|+. . .|. .++.+.+.|+..+..+-...++
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~--~--~gl~~~i~~~~~D~~~~~~~~~~fD~I 290 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNAL--A--AGVLDKIKFIQGDATQLSQYVDSVDFA 290 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHH--H--TTCGGGCEEEECCGGGGGGTCSCEEEE
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHH--H--cCCCCceEEEECChhhCCcccCCcCEE
Confidence 7889999999999999999999887556999999999999 888887 3 354 5688888887542221100000
Q ss_pred ccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 240 QNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 240 t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
...............+..+. ++++.+.+.| ||.++|.||+ ...+...+.+
T Consensus 291 i~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~------~~~~~~~~~~ 341 (373)
T 3tm4_A 291 ISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTE------KKAIEEAIAE 341 (373)
T ss_dssp EEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESC------HHHHHHHHHH
T ss_pred EECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECC------HHHHHHHHHH
Confidence 00000000011112233444 8889999988 7899999984 4566666654
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.61 E-value=9.7e-08 Score=91.56 Aligned_cols=125 Identities=17% Similarity=0.085 Sum_probs=80.0
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccc------ccc-CcceEEEEE
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYD------TVL-DIHALKLVK 224 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~------~~~-g~~~v~~~~ 224 (355)
....+..+++.+|++|||+|||+|..+..++...+ .++|+++|+++.++ +++++.++. .+. ...++.+..
T Consensus 94 ~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~ 173 (336)
T 2b25_A 94 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336)
T ss_dssp HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence 44556677899999999999999999999998754 48999999999999 777766210 000 024688888
Q ss_pred ecceeeecccCCCCCccCCcc-c-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHH
Q psy7769 225 VGGSVVYSTCSLSPIQNDGVV-H-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLK 296 (355)
Q Consensus 225 ~Da~~lDaPCSgsG~t~~~~l-~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~ 296 (355)
.|+.....+.. .+ ..+.-+ . ..+. .++.++.+.|||||+++..+. +...+..+++
T Consensus 174 ~d~~~~~~~~~-~~-~fD~V~~~~~~~~---------~~l~~~~~~LkpgG~lv~~~~------~~~~~~~~~~ 230 (336)
T 2b25_A 174 KDISGATEDIK-SL-TFDAVALDMLNPH---------VTLPVFYPHLKHGGVCAVYVV------NITQVIELLD 230 (336)
T ss_dssp SCTTCCC---------EEEEEECSSSTT---------TTHHHHGGGEEEEEEEEEEES------SHHHHHHHHH
T ss_pred CChHHcccccC-CC-CeeEEEECCCCHH---------HHHHHHHHhcCCCcEEEEEeC------CHHHHHHHHH
Confidence 88653211110 00 000000 0 0011 358899999999999995543 3345555554
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.2e-07 Score=82.27 Aligned_cols=111 Identities=9% Similarity=-0.069 Sum_probs=74.9
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee------eeccc
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------VYSTC 234 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------lDaPC 234 (355)
.+.++.+|||+|||+|..+..++... ..|+++|+++.++ +++++. +.+...|... +|...
T Consensus 40 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~----------~~~~~~d~~~~~~~~~fD~v~ 107 (211)
T 3e23_A 40 ELPAGAKILELGCGAGYQAEAMLAAG--FDVDATDGSPELAAEASRRLG----------RPVRTMLFHQLDAIDAYDAVW 107 (211)
T ss_dssp TSCTTCEEEESSCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHT----------SCCEECCGGGCCCCSCEEEEE
T ss_pred hcCCCCcEEEECCCCCHHHHHHHHcC--CeEEEECCCHHHHHHHHHhcC----------CceEEeeeccCCCCCcEEEEE
Confidence 45689999999999999999998873 6999999999998 555542 1233344332 23322
Q ss_pred CCCCCccCCccc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCC-----------CCHHHHHHHHHh
Q psy7769 235 SLSPIQNDGVVH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPI-----------QNDGVVHMSLKR 297 (355)
Q Consensus 235 SgsG~t~~~~l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~-----------ENE~vV~~~L~~ 297 (355)
+... +. +..+ ..+.+|+++.++|||||+++.+++..... -+.+.+..+|++
T Consensus 108 ~~~~------l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 170 (211)
T 3e23_A 108 AHAC------LLHVPRD------ELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAE 170 (211)
T ss_dssp ECSC------GGGSCHH------HHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHH
T ss_pred ecCc------hhhcCHH------HHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHh
Confidence 1111 11 1111 22378999999999999999997765432 256677777765
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.60 E-value=6.1e-08 Score=91.54 Aligned_cols=114 Identities=10% Similarity=-0.034 Sum_probs=75.7
Q ss_pred hhCCCCCCeEeeecccCcchHHHHH-HhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccCC
Q psy7769 161 ALNIRPYDTVLDMCAAPGGKTLVAL-QTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSL 236 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgPGgKT~~la-~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSg 236 (355)
...+.++.+|||+|||+|..+..++ .....++|+++|+++.++ +++++. . .+. .++.++..|+..+..+.+-
T Consensus 113 ~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~--~--~~~~~~v~~~~~d~~~~~~~~~f 188 (305)
T 3ocj_A 113 QRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAA--G--HALAGQITLHRQDAWKLDTREGY 188 (305)
T ss_dssp HHHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHT--T--STTGGGEEEEECCGGGCCCCSCE
T ss_pred HhhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHH--h--cCCCCceEEEECchhcCCccCCe
Confidence 3346789999999999999999886 334457999999999999 888887 3 344 3589999998653322100
Q ss_pred CCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 237 SPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 237 sG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
..+.....+.+-++. ....++|+++.++|||||+++.++.+.
T Consensus 189 D~v~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~i~~~~~ 230 (305)
T 3ocj_A 189 DLLTSNGLNIYEPDD----ARVTELYRRFWQALKPGGALVTSFLTP 230 (305)
T ss_dssp EEEECCSSGGGCCCH----HHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred EEEEECChhhhcCCH----HHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence 000000001111110 011168999999999999999987553
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.60 E-value=6.5e-08 Score=93.42 Aligned_cols=120 Identities=14% Similarity=0.069 Sum_probs=83.0
Q ss_pred chhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee
Q psy7769 152 DGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV 229 (355)
Q Consensus 152 D~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~ 229 (355)
|..+.+....+.+.++.+|||+|||+|..+..++......+|+++|+++.++ +++++. . .+. ++.+...|...
T Consensus 182 d~~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~--~--~~~-~~~~~~~d~~~ 256 (343)
T 2pjd_A 182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLA--A--NGV-EGEVFASNVFS 256 (343)
T ss_dssp CHHHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHH--H--TTC-CCEEEECSTTT
T ss_pred cHHHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH--H--hCC-CCEEEEccccc
Confidence 5567777777877788899999999999999999887667999999999999 777776 2 222 23556666532
Q ss_pred -----eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCC
Q psy7769 230 -----VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSP 284 (355)
Q Consensus 230 -----lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~ 284 (355)
+|.-.+.. .+++... .......++++.+.+.|||||.++..+.+..+
T Consensus 257 ~~~~~fD~Iv~~~------~~~~g~~--~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 308 (343)
T 2pjd_A 257 EVKGRFDMIISNP------PFHDGMQ--TSLDAAQTLIRGAVRHLNSGGELRIVANAFLP 308 (343)
T ss_dssp TCCSCEEEEEECC------CCCSSSH--HHHHHHHHHHHHHGGGEEEEEEEEEEEETTSS
T ss_pred cccCCeeEEEECC------CcccCcc--CCHHHHHHHHHHHHHhCCCCcEEEEEEcCCCC
Confidence 22222110 0111100 01112238999999999999999999887754
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=98.59 E-value=8.4e-08 Score=85.31 Aligned_cols=106 Identities=14% Similarity=0.061 Sum_probs=71.1
Q ss_pred HhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCC
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLS 237 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgs 237 (355)
..+.+.++.+|||+|||+|..+..++... ..|+++|+++.++ +++++. .++.+...|+..+..+
T Consensus 39 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~--------~~~~~~~~d~~~~~~~---- 104 (220)
T 3hnr_A 39 EDVVNKSFGNVLEFGVGTGNLTNKLLLAG--RTVYGIEPSREMRMIAKEKLP--------KEFSITEGDFLSFEVP---- 104 (220)
T ss_dssp HHHHHTCCSEEEEECCTTSHHHHHHHHTT--CEEEEECSCHHHHHHHHHHSC--------TTCCEESCCSSSCCCC----
T ss_pred HHhhccCCCeEEEeCCCCCHHHHHHHhCC--CeEEEEeCCHHHHHHHHHhCC--------CceEEEeCChhhcCCC----
Confidence 33445689999999999999999998873 7999999999998 555443 2356677776543322
Q ss_pred CCccCCccccchHHHHhhhhHH--HHHHHHHhhccCCcEEEEEeCCC
Q psy7769 238 PIQNDGVVHMSLKRIWEETGCE--IEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 238 G~t~~~~l~~~~~~l~~l~~lQ--~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
+ +.+. .+...-+..+...+ .+|+++.++|||||.++.++...
T Consensus 105 ~-~fD~--v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 148 (220)
T 3hnr_A 105 T-SIDT--IVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIF 148 (220)
T ss_dssp S-CCSE--EEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECB
T ss_pred C-CeEE--EEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 1 1111 11111111122222 58999999999999999998655
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.59 E-value=6.7e-08 Score=89.73 Aligned_cols=102 Identities=18% Similarity=0.059 Sum_probs=71.5
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceee----
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVV---- 230 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~l---- 230 (355)
.....+.+.++.+|||+|||+|..+..++. ..+.|+++|+++.++ +++++. ++.+...|+..+
T Consensus 48 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~---------~~~~~~~d~~~~~~~~ 116 (279)
T 3ccf_A 48 DLLQLLNPQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYP---------HLHFDVADARNFRVDK 116 (279)
T ss_dssp HHHHHHCCCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCT---------TSCEEECCTTTCCCSS
T ss_pred HHHHHhCCCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCC---------CCEEEECChhhCCcCC
Confidence 345666788999999999999999999988 347999999999999 555443 234566665432
Q ss_pred --ecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 231 --YSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 231 --DaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
|...+... +.| +.....+|+++.++|||||+++.++...
T Consensus 117 ~fD~v~~~~~------l~~-------~~d~~~~l~~~~~~LkpgG~l~~~~~~~ 157 (279)
T 3ccf_A 117 PLDAVFSNAM------LHW-------VKEPEAAIASIHQALKSGGRFVAEFGGK 157 (279)
T ss_dssp CEEEEEEESC------GGG-------CSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred CcCEEEEcch------hhh-------CcCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 22221111 112 1223378999999999999999987653
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.59 E-value=8.6e-08 Score=89.16 Aligned_cols=105 Identities=9% Similarity=0.012 Sum_probs=72.3
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccCCCCCccC
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLSPIQND 242 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG~t~~ 242 (355)
++.+|||+|||+|..+..++.. ...|+++|+++.++ +++++. . .+. .++.++..|...+...- .+ +
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~--~--~~~~~~v~~~~~d~~~~~~~~--~~-~-- 136 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAE--A--KGVSDNMQFIHCAAQDVASHL--ET-P-- 136 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHH--C---CCGGGEEEEESCGGGTGGGC--SS-C--
T ss_pred CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHH--h--cCCCcceEEEEcCHHHhhhhc--CC-C--
Confidence 4789999999999999999887 37999999999999 777776 3 344 57889998875432100 00 0
Q ss_pred CccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 243 GVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 243 ~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
-++.+...-+........+|+++.++|||||+++.++..
T Consensus 137 fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (285)
T 4htf_A 137 VDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYN 175 (285)
T ss_dssp EEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred ceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeC
Confidence 011111111222223347899999999999999998763
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=7.4e-08 Score=89.51 Aligned_cols=112 Identities=6% Similarity=-0.229 Sum_probs=70.7
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccc---------cc----cccCcceEEEEEecc
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRP---------YD----TVLDIHALKLVKVGG 227 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r---------~~----~~~g~~~v~~~~~Da 227 (355)
.+.++.+|||++||+|.-+..||+.+ ..|+|+|+|+.++ ++++... .. +.....++.+.++|+
T Consensus 65 ~~~~~~~vLD~GCG~G~~~~~La~~G--~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~ 142 (252)
T 2gb4_A 65 KGQSGLRVFFPLCGKAIEMKWFADRG--HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSI 142 (252)
T ss_dssp TTCCSCEEEETTCTTCTHHHHHHHTT--CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCT
T ss_pred cCCCCCeEEEeCCCCcHHHHHHHHCC--CeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcc
Confidence 45688999999999999999999874 5899999999999 5444320 00 000124688999998
Q ss_pred eeeeccc-CCCCCccCCc-cccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 228 SVVYSTC-SLSPIQNDGV-VHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 228 ~~lDaPC-SgsG~t~~~~-l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
..++.+- ..+-+..... +.+-+. ...+..++++.++|||||+++..|..
T Consensus 143 ~~l~~~~~~~FD~V~~~~~l~~l~~-----~~~~~~l~~~~~~LkpGG~l~l~~~~ 193 (252)
T 2gb4_A 143 FDLPRANIGKFDRIWDRGALVAINP-----GDHDRYADIILSLLRKEFQYLVAVLS 193 (252)
T ss_dssp TTGGGGCCCCEEEEEESSSTTTSCG-----GGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred ccCCcccCCCEEEEEEhhhhhhCCH-----HHHHHHHHHHHHHcCCCeEEEEEEEe
Confidence 6543321 0000000000 111111 11227899999999999999876644
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=4.1e-08 Score=91.43 Aligned_cols=111 Identities=11% Similarity=0.006 Sum_probs=74.8
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-----
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV----- 229 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~----- 229 (355)
+....+...++.+|||+|||+|..+..++... .+|+++|+|+.++ +++++..........++.+...|...
T Consensus 48 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 125 (293)
T 3thr_A 48 WLLGLLRQHGCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDV 125 (293)
T ss_dssp HHHHHHHHTTCCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHS
T ss_pred HHHHHhcccCCCEEEEecCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcccc
Confidence 44455566788999999999999999998874 5999999999999 66655210100122456777776533
Q ss_pred -----eecccC-CCCCccCCccccchHHHHhhhh-------HHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 230 -----VYSTCS-LSPIQNDGVVHMSLKRIWEETG-------CEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 230 -----lDaPCS-gsG~t~~~~l~~~~~~l~~l~~-------lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
.|.-.+ |.. +..+.. ...+|+++.++|||||+++.+++..
T Consensus 126 ~~~~~fD~V~~~g~~-------------l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (293)
T 3thr_A 126 PAGDGFDAVICLGNS-------------FAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY 178 (293)
T ss_dssp CCTTCEEEEEECTTC-------------GGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred ccCCCeEEEEEcChH-------------HhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCH
Confidence 332221 111 111112 2388999999999999999998763
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.58 E-value=1e-07 Score=86.29 Aligned_cols=110 Identities=14% Similarity=0.030 Sum_probs=77.4
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeee
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVY 231 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lD 231 (355)
.......+++.+|++|||+|||+|..+..++.. .++|+++|+++.++ +++++. . .+. .++.+...|.....
T Consensus 80 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~--~--~~~~~~~~~~~~d~~~~~ 153 (248)
T 2yvl_A 80 SFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLK--K--FNLGKNVKFFNVDFKDAE 153 (248)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHH--H--TTCCTTEEEECSCTTTSC
T ss_pred HHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHH--H--cCCCCcEEEEEcChhhcc
Confidence 346666778889999999999999999999987 48999999999999 777776 3 243 46788777764311
Q ss_pred cccCCCCCccCCcccc-chHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 232 STCSLSPIQNDGVVHM-SLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 232 aPCSgsG~t~~~~l~~-~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
.+ . + .-++.+ ... ....+++++.++|+|||+++..+.+.
T Consensus 154 ~~--~-~---~~D~v~~~~~------~~~~~l~~~~~~L~~gG~l~~~~~~~ 193 (248)
T 2yvl_A 154 VP--E-G---IFHAAFVDVR------EPWHYLEKVHKSLMEGAPVGFLLPTA 193 (248)
T ss_dssp CC--T-T---CBSEEEECSS------CGGGGHHHHHHHBCTTCEEEEEESSH
T ss_pred cC--C-C---cccEEEECCc------CHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 00 0 0 011111 000 11156889999999999999988654
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.3e-07 Score=92.62 Aligned_cols=118 Identities=11% Similarity=-0.007 Sum_probs=75.4
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccc---cccCc--ceEEEEEecceee
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYD---TVLDI--HALKLVKVGGSVV 230 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~---~~~g~--~~v~~~~~Da~~l 230 (355)
++..+++++|++|||+|||.|..++.+|...+..+|+|+|+++.++ +++++++++ ...|. .+|.++++|+..+
T Consensus 165 il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~l 244 (438)
T 3uwp_A 165 MIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE 244 (438)
T ss_dssp HHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSH
T ss_pred HHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCC
Confidence 3456688999999999999999999999765545699999999988 544432100 00233 5799999998653
Q ss_pred eccc--CCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 231 YSTC--SLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 231 DaPC--SgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
+.+- ...-+..-....|.+ .+.+.|.+.++.|||||+||.+-...
T Consensus 245 p~~d~~~~aDVVf~Nn~~F~p-------dl~~aL~Ei~RvLKPGGrIVssE~f~ 291 (438)
T 3uwp_A 245 EWRERIANTSVIFVNNFAFGP-------EVDHQLKERFANMKEGGRIVSSKPFA 291 (438)
T ss_dssp HHHHHHHTCSEEEECCTTCCH-------HHHHHHHHHHTTSCTTCEEEESSCSS
T ss_pred ccccccCCccEEEEcccccCc-------hHHHHHHHHHHcCCCCcEEEEeeccc
Confidence 3210 000000000011222 22255778889999999999764433
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.6e-07 Score=86.98 Aligned_cols=109 Identities=14% Similarity=0.076 Sum_probs=73.4
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccCCCCCc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLSPIQ 240 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG~t 240 (355)
+.++.+|||+|||+|..+..++... .+.|+++|+++.++ +++++. . .+. .++.++..|......+. .+ .
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~--~--~~~~~~v~~~~~d~~~~~~~~--~~-~ 133 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRAR--N--MKRRFKVFFRAQDSYGRHMDL--GK-E 133 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHH--T--SCCSSEEEEEESCTTTSCCCC--SS-C
T ss_pred CCCCCeEEEECCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH--h--cCCCccEEEEECCccccccCC--CC-C
Confidence 4688999999999999999988763 35899999999999 777776 3 233 46888888875432110 00 0
Q ss_pred cCCccccchHHH----HhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 241 NDGVVHMSLKRI----WEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 241 ~~~~l~~~~~~l----~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
-++.+....+ ........+|+++.++|||||+++.+++..
T Consensus 134 --fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 177 (298)
T 1ri5_A 134 --FDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 177 (298)
T ss_dssp --EEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred --cCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 0111000001 111222388999999999999999998763
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.56 E-value=6.4e-08 Score=85.25 Aligned_cols=111 Identities=15% Similarity=-0.022 Sum_probs=70.9
Q ss_pred hhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCC
Q psy7769 161 ALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSP 238 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG 238 (355)
+....++.+|||+|||+|..+..++... ..+|+++|+++.++ +++++. . .+ .++.+...|+..++.+- +
T Consensus 18 ~~~~~~~~~vLDiGcG~G~~~~~~~~~~-~~~v~~vD~s~~~~~~a~~~~~--~--~~-~~~~~~~~d~~~~~~~~---~ 88 (209)
T 2p8j_A 18 CNESNLDKTVLDCGAGGDLPPLSIFVED-GYKTYGIEISDLQLKKAENFSR--E--NN-FKLNISKGDIRKLPFKD---E 88 (209)
T ss_dssp HHHSSSCSEEEEESCCSSSCTHHHHHHT-TCEEEEEECCHHHHHHHHHHHH--H--HT-CCCCEEECCTTSCCSCT---T
T ss_pred HhccCCCCEEEEECCCCCHHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHH--h--cC-CceEEEECchhhCCCCC---C
Confidence 3345678999999999999866554332 36899999999999 666665 2 12 34677777765432111 0
Q ss_pred CccCCccccchHHHHhh--hhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 239 IQNDGVVHMSLKRIWEE--TGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 239 ~t~~~~l~~~~~~l~~l--~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
+ -++.+...-+..+ .....+++++.+.|||||.+++++.+..
T Consensus 89 -~--fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 132 (209)
T 2p8j_A 89 -S--MSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTK 132 (209)
T ss_dssp -C--EEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETT
T ss_pred -c--eeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 0 0010100001111 1223889999999999999999998763
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=98.56 E-value=9.8e-08 Score=86.59 Aligned_cols=107 Identities=13% Similarity=-0.103 Sum_probs=72.5
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccC
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQND 242 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~ 242 (355)
.++.+|||+|||+|..+..++... ...|+++|+++.++ +++++. . .+..++.+...|...++.+- + .
T Consensus 78 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~--~--~~~~~~~~~~~d~~~~~~~~---~---~ 146 (241)
T 2ex4_A 78 TGTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLG--E--EGKRVRNYFCCGLQDFTPEP---D---S 146 (241)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTG--G--GGGGEEEEEECCGGGCCCCS---S---C
T ss_pred CCCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhh--h--cCCceEEEEEcChhhcCCCC---C---C
Confidence 368899999999999999888765 46899999999999 777776 3 23456888888865432221 0 0
Q ss_pred CccccchHHHHhhhh--HHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 243 GVVHMSLKRIWEETG--CEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 243 ~~l~~~~~~l~~l~~--lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
-++.+...-+..+.. +..+|+.+.++|||||++++++...
T Consensus 147 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 188 (241)
T 2ex4_A 147 YDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMA 188 (241)
T ss_dssp EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred EEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccC
Confidence 111111111111111 2278999999999999999987543
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=98.56 E-value=9e-08 Score=93.76 Aligned_cols=115 Identities=11% Similarity=-0.047 Sum_probs=75.8
Q ss_pred CCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhcccccc---c-cCcceEEEEEecceeeec----
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRPYDT---V-LDIHALKLVKVGGSVVYS---- 232 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r~~~---~-~g~~~v~~~~~Da~~lDa---- 232 (355)
+.+|.+|||+|||+|..+..++... ..++|+++|+++.++ +++++++... . ....++.++..|...++.
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~ 160 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE 160 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence 5689999999999999999999876 457999999999999 7777651100 0 112578999988765311
Q ss_pred ccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 233 TCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 233 PCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
|-. .+ .-++.+...-+........+|+++.++|||||.|++++...
T Consensus 161 ~~~-~~---~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 206 (383)
T 4fsd_A 161 GVP-DS---SVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYA 206 (383)
T ss_dssp CCC-TT---CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred CCC-CC---CEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 210 00 01111111111112223388999999999999999986544
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.5e-07 Score=89.71 Aligned_cols=100 Identities=10% Similarity=0.015 Sum_probs=65.8
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcc------eEEEEEecce--------
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIH------ALKLVKVGGS-------- 228 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~------~v~~~~~Da~-------- 228 (355)
.+|.+|||+|||+|+-+..++... .+.|+++|+|+.++ ++++.. . .+.. ++.+...|..
T Consensus 47 ~~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~--~--~~~~~~~~~~~~~f~~~d~~~d~~~~~l 121 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYN--K--LNSGIKTKYYKFDYIQETIRSDTFVSSV 121 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHH--H--HCC----CCCEEEEEECCTTSSSHHHHH
T ss_pred CCCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHH--h--ccccccccccccchhhhhcccchhhhhh
Confidence 358899999999998777665532 36899999999999 666554 2 1111 2455555541
Q ss_pred -------eeecccCCCCCccCCcccc--chHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 229 -------VVYSTCSLSPIQNDGVVHM--SLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 229 -------~lDaPCSgsG~t~~~~l~~--~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
..|+.++... ++| .... .+.+|+++.++|||||+++.+|+.
T Consensus 122 ~~~~~~~~FD~V~~~~~------lhy~~~~~~------~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 122 REVFYFGKFNIIDWQFA------IHYSFHPRH------YATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp HTTCCSSCEEEEEEESC------GGGTCSTTT------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hccccCCCeeEEEECch------HHHhCCHHH------HHHHHHHHHHHcCCCCEEEEEeCC
Confidence 1344332221 222 2221 237899999999999999999874
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.6e-07 Score=92.63 Aligned_cols=113 Identities=18% Similarity=0.057 Sum_probs=77.8
Q ss_pred chhcHHHHHhh------CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEE
Q psy7769 152 DGASLLPVLAL------NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLV 223 (355)
Q Consensus 152 D~aS~l~~~~L------~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~ 223 (355)
|..+.+....+ ...+|.+|||+|||+|..+..++... .+|+++|+++.++ +++|+. . .+. ++.++
T Consensus 213 d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g--~~V~gvDis~~al~~A~~n~~--~--~~~-~v~~~ 285 (381)
T 3dmg_A 213 DPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMG--AEVVGVEDDLASVLSLQKGLE--A--NAL-KAQAL 285 (381)
T ss_dssp CHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTT--CEEEEEESBHHHHHHHHHHHH--H--TTC-CCEEE
T ss_pred CHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHH--H--cCC-CeEEE
Confidence 44455444444 23478899999999999999999873 6999999999999 888887 3 232 25677
Q ss_pred Eeccee------------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCC
Q psy7769 224 KVGGSV------------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSP 284 (355)
Q Consensus 224 ~~Da~~------------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~ 284 (355)
..|+.. +++|....+ . ......+++++.+.+.|||||+++++++...+
T Consensus 286 ~~D~~~~~~~~~~fD~Ii~npp~~~~~-----------~--~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~ 345 (381)
T 3dmg_A 286 HSDVDEALTEEARFDIIVTNPPFHVGG-----------A--VILDVAQAFVNVAAARLRPGGVFFLVSNPFLK 345 (381)
T ss_dssp ECSTTTTSCTTCCEEEEEECCCCCTTC-----------S--SCCHHHHHHHHHHHHHEEEEEEEEEEECTTSC
T ss_pred EcchhhccccCCCeEEEEECCchhhcc-----------c--ccHHHHHHHHHHHHHhcCcCcEEEEEEcCCCC
Confidence 776533 333331111 0 00111227899999999999999999887753
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.2e-07 Score=84.96 Aligned_cols=101 Identities=8% Similarity=-0.069 Sum_probs=69.8
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCcc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQN 241 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~ 241 (355)
..++.+|||+|||+|..+..++... ..|+++|+++.++ +++++. . ++.+...|...+.++. +.
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~-----~---~v~~~~~d~~~~~~~~-----~f 104 (250)
T 2p7i_A 40 FFRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLK-----D---GITYIHSRFEDAQLPR-----RY 104 (250)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSC-----S---CEEEEESCGGGCCCSS-----CE
T ss_pred hcCCCcEEEECCCCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhhh-----C---CeEEEEccHHHcCcCC-----cc
Confidence 4578899999999999999988765 4899999999999 666554 1 5778888865431111 10
Q ss_pred CCccccchHHHHhhhhHHHHHHHHH-hhccCCcEEEEEeCC
Q psy7769 242 DGVVHMSLKRIWEETGCEIEIKHAL-KLVKVGGSVVYSTCS 281 (355)
Q Consensus 242 ~~~l~~~~~~l~~l~~lQ~lL~~A~-~~LkpGG~lVYsTCS 281 (355)
++.+...-+..+.....+|+++. ++|||||+++.++..
T Consensus 105 --D~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~ 143 (250)
T 2p7i_A 105 --DNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPN 143 (250)
T ss_dssp --EEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred --cEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 11111111222223347899999 999999999998854
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.55 E-value=8.7e-08 Score=86.01 Aligned_cols=100 Identities=14% Similarity=0.069 Sum_probs=72.2
Q ss_pred HHHhh--CCCCCCeEeeecccCcchHHHHHHhcC-----CCcEEEEcCCchhh--HHhhccccccccC-----cceEEEE
Q psy7769 158 PVLAL--NIRPYDTVLDMCAAPGGKTLVALQTLY-----PDYYCMDGASLLPV--LALNIRPYDTVLD-----IHALKLV 223 (355)
Q Consensus 158 ~~~~L--~~~pG~~VLD~CAgPGgKT~~la~~~~-----~g~V~AvD~s~~Rl--l~~~l~r~~~~~g-----~~~v~~~ 223 (355)
....+ .+++|.+|||+|||+|..+..++.... .++|+++|+++.++ +++++. . .+ ..++.+.
T Consensus 70 ~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~--~--~~~~~~~~~~v~~~ 145 (227)
T 2pbf_A 70 SLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIK--R--DKPELLKIDNFKII 145 (227)
T ss_dssp HHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHH--H--HCGGGGSSTTEEEE
T ss_pred HHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHH--H--cCccccccCCEEEE
Confidence 33444 578999999999999999999998763 36999999999999 777776 3 23 3568888
Q ss_pred Eecceee-----------ecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 224 KVGGSVV-----------YSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 224 ~~Da~~l-----------DaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
..|+... |.-.+..+ +..++..+.++|||||+++.++-
T Consensus 146 ~~d~~~~~~~~~~~~~~fD~I~~~~~-------------------~~~~~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 146 HKNIYQVNEEEKKELGLFDAIHVGAS-------------------ASELPEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp ECCGGGCCHHHHHHHCCEEEEEECSB-------------------BSSCCHHHHHHEEEEEEEEEEEE
T ss_pred ECChHhcccccCccCCCcCEEEECCc-------------------hHHHHHHHHHhcCCCcEEEEEEc
Confidence 8886531 21111100 00346788899999999998754
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.9e-07 Score=86.41 Aligned_cols=117 Identities=13% Similarity=0.066 Sum_probs=80.1
Q ss_pred cHHHHHhhC--CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-
Q psy7769 155 SLLPVLALN--IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV- 229 (355)
Q Consensus 155 S~l~~~~L~--~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~- 229 (355)
..+....+. +.+|.+|||+|||+|..+..++... .+|+++|+++.++ +++|+. . .+.. +.+...|...
T Consensus 107 t~~~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~g--~~v~gvDi~~~~v~~a~~n~~--~--~~~~-v~~~~~d~~~~ 179 (254)
T 2nxc_A 107 TRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLG--GKALGVDIDPMVLPQAEANAK--R--NGVR-PRFLEGSLEAA 179 (254)
T ss_dssp HHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCGGGHHHHHHHHH--H--TTCC-CEEEESCHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHH--H--cCCc-EEEEECChhhc
Confidence 334444432 5789999999999999999888764 3999999999999 788877 3 2333 6777776543
Q ss_pred -----eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 230 -----VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 230 -----lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
.|.-.+. .... .+..++..+.++|||||+++.+.... +....+...+++
T Consensus 180 ~~~~~fD~Vv~n----------~~~~------~~~~~l~~~~~~LkpgG~lils~~~~---~~~~~v~~~l~~ 233 (254)
T 2nxc_A 180 LPFGPFDLLVAN----------LYAE------LHAALAPRYREALVPGGRALLTGILK---DRAPLVREAMAG 233 (254)
T ss_dssp GGGCCEEEEEEE----------CCHH------HHHHHHHHHHHHEEEEEEEEEEEEEG---GGHHHHHHHHHH
T ss_pred CcCCCCCEEEEC----------CcHH------HHHHHHHHHHHHcCCCCEEEEEeecc---CCHHHHHHHHHH
Confidence 1221100 0011 12378999999999999999987654 345566666654
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.4e-07 Score=85.46 Aligned_cols=105 Identities=16% Similarity=0.054 Sum_probs=69.3
Q ss_pred hCCCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeee-cccCCC
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVY-STCSLS 237 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lD-aPCSgs 237 (355)
+.+++|++|||+|||+|..+.++++.. ..++|+++|+++.++ +.++.+ . . .++.++.+|+...+ .|...
T Consensus 73 ~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~--~---~-~~v~~~~~d~~~~~~~~~~~- 145 (233)
T 2ipx_A 73 IHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAK--K---R-TNIIPVIEDARHPHKYRMLI- 145 (233)
T ss_dssp CCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHH--H---C-TTEEEECSCTTCGGGGGGGC-
T ss_pred ecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhh--c---c-CCeEEEEcccCChhhhcccC-
Confidence 357789999999999999999999886 348999999999877 555555 2 1 45778888775421 11100
Q ss_pred CCccCCccccc-hHHHHhhhhH-HHHHHHHHhhccCCcEEEEEeC
Q psy7769 238 PIQNDGVVHMS-LKRIWEETGC-EIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 238 G~t~~~~l~~~-~~~l~~l~~l-Q~lL~~A~~~LkpGG~lVYsTC 280 (355)
+ . -++.+. .. .... +.++.++.++|||||+++.++.
T Consensus 146 ~-~--~D~V~~~~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 146 A-M--VDVIFADVA----QPDQTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp C-C--EEEEEECCC----CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred C-c--EEEEEEcCC----CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 0 0 011000 00 0011 1568889999999999999543
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.55 E-value=2e-07 Score=84.08 Aligned_cols=114 Identities=9% Similarity=-0.045 Sum_probs=78.3
Q ss_pred CCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeee------cccCCCC
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVY------STCSLSP 238 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lD------aPCSgsG 238 (355)
+.+|||+|||+|..+..++.. ...|+++|+++.++ +++++. .. ....++.+...|...+. ...+...
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~--~~-~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~ 141 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMASP--ERFVVGLDISESALAKANETYG--SS-PKAEYFSFVKEDVFTWRPTELFDLIFDYVF 141 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCBT--TEEEEEECSCHHHHHHHHHHHT--TS-GGGGGEEEECCCTTTCCCSSCEEEEEEESS
T ss_pred CCCEEEeCCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHhh--cc-CCCcceEEEECchhcCCCCCCeeEEEEChh
Confidence 349999999999999988763 36899999999999 777776 21 12357899988876532 2221100
Q ss_pred CccCCccc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCC-------CHHHHHHHHHh
Q psy7769 239 IQNDGVVH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQ-------NDGVVHMSLKR 297 (355)
Q Consensus 239 ~t~~~~l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~E-------NE~vV~~~L~~ 297 (355)
+. +.++ ....+|+.+.++|||||+++..+.+..... ....+...|+.
T Consensus 142 ------l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 196 (235)
T 3lcc_A 142 ------FCAIEPE------MRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVP 196 (235)
T ss_dssp ------TTTSCGG------GHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGG
T ss_pred ------hhcCCHH------HHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHH
Confidence 11 1111 222789999999999999998776654332 45677777764
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-07 Score=89.19 Aligned_cols=111 Identities=15% Similarity=-0.030 Sum_probs=75.1
Q ss_pred HhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc---ceEEEEEecceeeeccc
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI---HALKLVKVGGSVVYSTC 234 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~---~~v~~~~~Da~~lDaPC 234 (355)
..+.+.++ +|||+|||+|..+..++... .+|+++|+++.++ +++++. . .+. .++.++..|...++.+-
T Consensus 77 ~~~~~~~~-~vLDlGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~--~--~~~~~~~~v~~~~~d~~~~~~~~ 149 (299)
T 3g2m_A 77 TRTGPVSG-PVLELAAGMGRLTFPFLDLG--WEVTALELSTSVLAAFRKRLA--E--APADVRDRCTLVQGDMSAFALDK 149 (299)
T ss_dssp HHHCCCCS-CEEEETCTTTTTHHHHHTTT--CCEEEEESCHHHHHHHHHHHH--T--SCHHHHTTEEEEECBTTBCCCSC
T ss_pred HhhCCCCC-cEEEEeccCCHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHh--h--cccccccceEEEeCchhcCCcCC
Confidence 34444444 99999999999999998873 6899999999999 777776 3 232 46899999986532211
Q ss_pred CCCCCccCCccccchHHHHhhh--hHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 235 SLSPIQNDGVVHMSLKRIWEET--GCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 235 SgsG~t~~~~l~~~~~~l~~l~--~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
..+. +.....-+.... .+..+|+++.++|||||+|+.++....
T Consensus 150 -----~fD~-v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 194 (299)
T 3g2m_A 150 -----RFGT-VVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSE 194 (299)
T ss_dssp -----CEEE-EEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred -----CcCE-EEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCc
Confidence 1110 100111111111 123889999999999999999988764
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.6e-07 Score=87.36 Aligned_cols=103 Identities=15% Similarity=-0.017 Sum_probs=72.2
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee------e
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------V 230 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------l 230 (355)
...+...++.+|||+|||+|..+..++... .+|+++|+++.++ +++++. . .+. ++.+...|... .
T Consensus 113 ~~~~~~~~~~~vLD~GcG~G~~~~~l~~~g--~~v~~vD~s~~~~~~a~~~~~--~--~~~-~~~~~~~d~~~~~~~~~f 185 (286)
T 3m70_A 113 VDAAKIISPCKVLDLGCGQGRNSLYLSLLG--YDVTSWDHNENSIAFLNETKE--K--ENL-NISTALYDINAANIQENY 185 (286)
T ss_dssp HHHHHHSCSCEEEEESCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHH--H--TTC-CEEEEECCGGGCCCCSCE
T ss_pred HHHhhccCCCcEEEECCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHH--H--cCC-ceEEEEeccccccccCCc
Confidence 344455589999999999999999999874 6999999999999 777776 3 243 68888888754 2
Q ss_pred ecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 231 YSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 231 DaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
|...+... +.+-.. ..+..+|+++.++|||||.++..+
T Consensus 186 D~i~~~~~------~~~~~~-----~~~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 186 DFIVSTVV------FMFLNR-----ERVPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp EEEEECSS------GGGSCG-----GGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cEEEEccc------hhhCCH-----HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 22221110 111111 122278999999999999977643
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.5e-07 Score=81.27 Aligned_cols=109 Identities=10% Similarity=-0.127 Sum_probs=74.0
Q ss_pred CCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceee-------ecccCCC
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVV-------YSTCSLS 237 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~l-------DaPCSgs 237 (355)
+.+|||+|||+|..+..++... .+|+++|+++.++ ++++.. ++.++..|+..+ |.-.+..
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~---------~~~~~~~d~~~~~~~~~~fD~v~~~~ 110 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLG--HQIEGLEPATRLVELARQTHP---------SVTFHHGTITDLSDSPKRWAGLLAWY 110 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTT--CCEEEECCCHHHHHHHHHHCT---------TSEEECCCGGGGGGSCCCEEEEEEES
T ss_pred CCeEEEecCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHhCC---------CCeEEeCcccccccCCCCeEEEEehh
Confidence 8899999999999999998873 6899999999998 555533 246667776442 2222111
Q ss_pred CCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCC------------CCCHHHHHHHHHh
Q psy7769 238 PIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSP------------IQNDGVVHMSLKR 297 (355)
Q Consensus 238 G~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~------------~ENE~vV~~~L~~ 297 (355)
. +.+-+ ......+|+++.++|||||.++.++..... .-....+...|++
T Consensus 111 ~------l~~~~-----~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 171 (203)
T 3h2b_A 111 S------LIHMG-----PGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALET 171 (203)
T ss_dssp S------STTCC-----TTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHH
T ss_pred h------HhcCC-----HHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHH
Confidence 0 11111 012237899999999999999998866532 1235666667764
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.1e-07 Score=88.86 Aligned_cols=96 Identities=9% Similarity=0.012 Sum_probs=69.0
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhhHHhhccccccccCcceEEEEEeccee-------eecccCCCC
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKVGGSV-------VYSTCSLSP 238 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rll~~~l~r~~~~~g~~~v~~~~~Da~~-------lDaPCSgsG 238 (355)
.+.+|||+|||+|..+..++... .+|+|+|+|+.++ +..+ + ..++.+..+|+.. +|...++..
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml--~~a~--~----~~~v~~~~~~~e~~~~~~~sfD~v~~~~~ 108 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQI--RQAL--R----HPRVTYAVAPAEDTGLPPASVDVAIAAQA 108 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHH--HTCC--C----CTTEEEEECCTTCCCCCSSCEEEEEECSC
T ss_pred CCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhh--hhhh--h----cCCceeehhhhhhhcccCCcccEEEEeee
Confidence 46799999999999999998875 6899999999887 1122 1 1357888888754 444432221
Q ss_pred CccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCC
Q psy7769 239 IQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPI 285 (355)
Q Consensus 239 ~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ 285 (355)
++|.. .++.+.++.++|||||+|+..+.+....
T Consensus 109 ------~h~~~--------~~~~~~e~~rvLkpgG~l~~~~~~~~~~ 141 (257)
T 4hg2_A 109 ------MHWFD--------LDRFWAELRRVARPGAVFAAVTYGLTRV 141 (257)
T ss_dssp ------CTTCC--------HHHHHHHHHHHEEEEEEEEEEEECCCBC
T ss_pred ------hhHhh--------HHHHHHHHHHHcCCCCEEEEEECCCCCC
Confidence 33432 1257899999999999999988776543
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.54 E-value=4.6e-08 Score=94.45 Aligned_cols=127 Identities=13% Similarity=0.081 Sum_probs=82.0
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCC-----CcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce-------
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYP-----DYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS------- 228 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~-----g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~------- 228 (355)
.+.++.+|||.|||+|+.+..++..+.. ..|+|+|+++..+ ++.|+. . .+. ++.+..+|..
T Consensus 127 ~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~--~--~g~-~~~i~~~D~l~~~~~~~ 201 (344)
T 2f8l_A 127 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGAD--L--QRQ-KMTLLHQDGLANLLVDP 201 (344)
T ss_dssp TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHH--H--HTC-CCEEEESCTTSCCCCCC
T ss_pred CCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHH--h--CCC-CceEEECCCCCccccCC
Confidence 5678899999999999999999876532 6899999999999 666665 2 233 3556666542
Q ss_pred ----eeecccCCCCCccCCc--cccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEe-CCCCCCCCHHHHHHHHHh
Q psy7769 229 ----VVYSTCSLSPIQNDGV--VHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYST-CSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 229 ----~lDaPCSgsG~t~~~~--l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsT-CSl~~~ENE~vV~~~L~~ 297 (355)
..++|.+... ... .+|.+.........+ .++.++++.|+|||++++.+ .++...+....+...|.+
T Consensus 202 fD~Ii~NPPfg~~~---~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~ 275 (344)
T 2f8l_A 202 VDVVISDLPVGYYP---DDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKK 275 (344)
T ss_dssp EEEEEEECCCSEES---CHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHH
T ss_pred ccEEEECCCCCCcC---chhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHh
Confidence 2566651100 000 011111011122344 68999999999999999886 344444556666666654
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=98.54 E-value=2e-07 Score=83.93 Aligned_cols=104 Identities=13% Similarity=-0.059 Sum_probs=70.9
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCcc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQN 241 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~ 241 (355)
+.++.+|||+|||+|..+..++... .+|+++|+++.++ ++++.. ..++.++..|...++.+- + +
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~~d~~~~~~~~---~-~- 116 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRTG--YKAVGVDISEVMIQKGKERGE-------GPDLSFIKGDLSSLPFEN---E-Q- 116 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHTTTC-------BTTEEEEECBTTBCSSCT---T-C-
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhcc-------cCCceEEEcchhcCCCCC---C-C-
Confidence 4588999999999999999999873 6899999999998 554433 245788888876532221 0 0
Q ss_pred CCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 242 DGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 242 ~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
-++.+...-+........+|+++.++|+|||+++.++...
T Consensus 117 -fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 156 (242)
T 3l8d_A 117 -FEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGP 156 (242)
T ss_dssp -EEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred -ccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCC
Confidence 0111111111112223378999999999999999998544
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2e-07 Score=93.16 Aligned_cols=63 Identities=19% Similarity=0.084 Sum_probs=52.1
Q ss_pred HhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS 228 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~ 228 (355)
..+++.++++|||+|||+|..+..+|.. .++|+|+|+++.++ +++|++ . .+..++.+..+|+.
T Consensus 280 ~~l~~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~--~--~~~~~v~f~~~d~~ 344 (433)
T 1uwv_A 280 EWLDVQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNAR--L--NGLQNVTFYHENLE 344 (433)
T ss_dssp HHHTCCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHH--H--TTCCSEEEEECCTT
T ss_pred HhhcCCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHH--H--cCCCceEEEECCHH
Confidence 4456778999999999999999999987 37999999999999 888887 3 35557888877763
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.53 E-value=2e-07 Score=87.52 Aligned_cols=104 Identities=18% Similarity=0.036 Sum_probs=68.2
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc---e---
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG---S--- 228 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da---~--- 228 (355)
.....+.+.+|.+|||+|||+|..+..+++.. +.|+|+|+|+.++ +++++. . ...+..+...+. .
T Consensus 36 ~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g--~~V~gvD~S~~ml~~Ar~~~~--~---~~v~~~~~~~~~~~~~~~~ 108 (261)
T 3iv6_A 36 NDIFLENIVPGSTVAVIGASTRFLIEKALERG--ASVTVFDFSQRMCDDLAEALA--D---RCVTIDLLDITAEIPKELA 108 (261)
T ss_dssp HHHHTTTCCTTCEEEEECTTCHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTS--S---SCCEEEECCTTSCCCGGGT
T ss_pred HHHHhcCCCCcCEEEEEeCcchHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHH--h---ccceeeeeecccccccccC
Confidence 34556678899999999999999999999875 6899999999999 777776 3 111222222221 0
Q ss_pred -eeecccCCCCCccCCccc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 229 -VVYSTCSLSPIQNDGVVH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 229 -~lDaPCSgsG~t~~~~l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
..|...+... ++ |..+ ....++..+.++| |||+|+.|..
T Consensus 109 ~~fD~Vv~~~~------l~~~~~~------~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 109 GHFDFVLNDRL------INRFTTE------EARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp TCCSEEEEESC------GGGSCHH------HHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred CCccEEEEhhh------hHhCCHH------HHHHHHHHHHHhC-cCcEEEEEec
Confidence 0222221111 11 2221 1226788999999 9999998754
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=98.53 E-value=3.2e-07 Score=84.45 Aligned_cols=122 Identities=11% Similarity=0.016 Sum_probs=77.1
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCch------hh--HHhhccccccccCc-ceEEEEE
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLL------PV--LALNIRPYDTVLDI-HALKLVK 224 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~------Rl--l~~~l~r~~~~~g~-~~v~~~~ 224 (355)
....+..+.+.+|.+|||+|||+|..+..++... ..++|+++|+++. ++ +++++. . .+. .++.+..
T Consensus 32 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~--~--~~~~~~v~~~~ 107 (275)
T 3bkx_A 32 RLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLL--A--GPLGDRLTVHF 107 (275)
T ss_dssp HHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHH--T--STTGGGEEEEC
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHH--h--cCCCCceEEEE
Confidence 3344556678899999999999999999999886 3489999999997 77 777776 3 233 5788888
Q ss_pred ec-ceeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCC
Q psy7769 225 VG-GSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSP 284 (355)
Q Consensus 225 ~D-a~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~ 284 (355)
.| ....+.|.. .+ +. ++.+...-+........+++....+++|||+++.++.+...
T Consensus 108 ~d~~~~~~~~~~-~~-~f--D~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~ 164 (275)
T 3bkx_A 108 NTNLSDDLGPIA-DQ-HF--DRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQP 164 (275)
T ss_dssp SCCTTTCCGGGT-TC-CC--SEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSC
T ss_pred CChhhhccCCCC-CC-CE--EEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCC
Confidence 87 211122210 00 01 11111111111111224566666777789999998877643
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=98.53 E-value=1.4e-07 Score=82.93 Aligned_cols=102 Identities=10% Similarity=0.024 Sum_probs=70.5
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCcc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQN 241 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~ 241 (355)
..++ +|||+|||+|..+..++... ..|+++|+++.++ +++++. . .+. ++.+...|...++.+- + ..
T Consensus 28 ~~~~-~vLdiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~--~--~~~-~~~~~~~d~~~~~~~~---~-~f 95 (202)
T 2kw5_A 28 IPQG-KILCLAEGEGRNACFLASLG--YEVTAVDQSSVGLAKAKQLAQ--E--KGV-KITTVQSNLADFDIVA---D-AW 95 (202)
T ss_dssp SCSS-EEEECCCSCTHHHHHHHTTT--CEEEEECSSHHHHHHHHHHHH--H--HTC-CEEEECCBTTTBSCCT---T-TC
T ss_pred CCCC-CEEEECCCCCHhHHHHHhCC--CeEEEEECCHHHHHHHHHHHH--h--cCC-ceEEEEcChhhcCCCc---C-Cc
Confidence 5677 99999999999998888763 6999999999999 666665 2 222 5778877765432221 0 00
Q ss_pred CCc----cccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 242 DGV----VHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 242 ~~~----l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
+-- .++... ....+|+.+.++|||||.++.++.+..
T Consensus 96 D~v~~~~~~~~~~------~~~~~l~~~~~~L~pgG~l~~~~~~~~ 135 (202)
T 2kw5_A 96 EGIVSIFCHLPSS------LRQQLYPKVYQGLKPGGVFILEGFAPE 135 (202)
T ss_dssp SEEEEECCCCCHH------HHHHHHHHHHTTCCSSEEEEEEEECTT
T ss_pred cEEEEEhhcCCHH------HHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence 100 112111 222789999999999999999987643
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=2.1e-07 Score=78.61 Aligned_cols=109 Identities=14% Similarity=0.076 Sum_probs=71.6
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh-HHhhccccccccCcceEEEEEec---------------
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV-LALNIRPYDTVLDIHALKLVKVG--------------- 226 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl-l~~~l~r~~~~~g~~~v~~~~~D--------------- 226 (355)
++++.+|||+|||+|..+..+++..+ .++|+++|+++ ++ + . ++.+...|
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-~------------~~~~~~~d~~~~~~~~~~~~~~~ 85 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-V------------GVDFLQGDFRDELVMKALLERVG 85 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-T------------TEEEEESCTTSHHHHHHHHHHHT
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-C------------cEEEEEcccccchhhhhhhccCC
Confidence 67899999999999999999998853 47999999998 55 3 1 12333333
Q ss_pred -----ceeeecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 227 -----GSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 227 -----a~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
....+.|+...|. + .........++ .+++.+.++|+|||.++.++... ++...+...+..
T Consensus 86 ~~~~D~i~~~~~~~~~~~-------~-~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~---~~~~~~~~~~~~ 151 (180)
T 1ej0_A 86 DSKVQVVMSDMAPNMSGT-------P-AVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG---EGFDEYLREIRS 151 (180)
T ss_dssp TCCEEEEEECCCCCCCSC-------H-HHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS---TTHHHHHHHHHH
T ss_pred CCceeEEEECCCccccCC-------C-ccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC---CcHHHHHHHHHH
Confidence 3334444433331 0 11111122233 88999999999999999876543 555556556654
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.52 E-value=1.3e-07 Score=80.40 Aligned_cols=99 Identities=17% Similarity=0.080 Sum_probs=66.6
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-----------eec
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV-----------VYS 232 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~-----------lDa 232 (355)
++.+|||+|||+|..+..++.... .|+++|+++.++ +++++. . .+. ++.+.+.|+.. +|.
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~--~--~~~-~~~~~~~d~~~~~~~~~~~~~~~D~ 113 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGW--EAVLVEKDPEAVRLLKENVR--R--TGL-GARVVALPVEVFLPEAKAQGERFTV 113 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTC--EEEEECCCHHHHHHHHHHHH--H--HTC-CCEEECSCHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHH--H--cCC-ceEEEeccHHHHHHhhhccCCceEE
Confidence 788999999999999999998753 499999999999 777776 2 233 56777666533 111
Q ss_pred ccCCCCCccCCccccchHHHHhhhhHHHHHHHH--HhhccCCcEEEEEeCCCCCCC
Q psy7769 233 TCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHA--LKLVKVGGSVVYSTCSLSPIQ 286 (355)
Q Consensus 233 PCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A--~~~LkpGG~lVYsTCSl~~~E 286 (355)
-.+.. . +. . ...++++.. .++|||||.+++++++.....
T Consensus 114 i~~~~------~--~~-~------~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~~~ 154 (171)
T 1ws6_A 114 AFMAP------P--YA-M------DLAALFGELLASGLVEAGGLYVLQHPKDLYLP 154 (171)
T ss_dssp EEECC------C--TT-S------CTTHHHHHHHHHTCEEEEEEEEEEEETTSCCT
T ss_pred EEECC------C--Cc-h------hHHHHHHHHHhhcccCCCcEEEEEeCCccCCc
Confidence 11000 0 11 0 011334444 499999999999888775544
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.52 E-value=1.9e-07 Score=84.80 Aligned_cols=106 Identities=13% Similarity=0.050 Sum_probs=69.9
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCc
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQ 240 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t 240 (355)
...++.+|||+|||+|..+..++... ..|+++|+|+.++ +++++. . .+. ++.++..|...++.+- .
T Consensus 38 ~~~~~~~vLDlGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~--~--~~~-~v~~~~~d~~~~~~~~-----~ 105 (252)
T 1wzn_A 38 AKREVRRVLDLACGTGIPTLELAERG--YEVVGLDLHEEMLRVARRKAK--E--RNL-KIEFLQGDVLEIAFKN-----E 105 (252)
T ss_dssp CSSCCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHH--H--TTC-CCEEEESCGGGCCCCS-----C
T ss_pred cccCCCEEEEeCCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHH--h--cCC-ceEEEECChhhcccCC-----C
Confidence 34678899999999999999998863 6899999999999 777765 2 222 5778888875432211 0
Q ss_pred cCCccc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 241 NDGVVH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 241 ~~~~l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
.+--+. +............++|+++.++|||||.++..+.
T Consensus 106 fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 106 FDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp EEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 000000 0000000011223889999999999999998653
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-07 Score=84.61 Aligned_cols=107 Identities=11% Similarity=0.035 Sum_probs=71.0
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCcc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQN 241 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~ 241 (355)
+.++.+|||+|||+|..+..++... .+|+++|+++.++ +++++. . .+ .++.++..|...++.+- + ..
T Consensus 36 ~~~~~~vLDlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~--~--~~-~~~~~~~~d~~~~~~~~---~-~~ 104 (227)
T 1ve3_A 36 MKKRGKVLDLACGVGGFSFLLEDYG--FEVVGVDISEDMIRKAREYAK--S--RE-SNVEFIVGDARKLSFED---K-TF 104 (227)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHH--H--TT-CCCEEEECCTTSCCSCT---T-CE
T ss_pred cCCCCeEEEEeccCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHH--h--cC-CCceEEECchhcCCCCC---C-cE
Confidence 3458899999999999999888875 3999999999999 777765 2 22 56788888875432110 0 00
Q ss_pred CCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 242 DGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 242 ~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
+--+....-.........++|+++.++|||||+++..++.
T Consensus 105 D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 105 DYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp EEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 0000000000111112237899999999999999998775
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.7e-07 Score=93.78 Aligned_cols=95 Identities=14% Similarity=0.082 Sum_probs=66.8
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce------
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS------ 228 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~------ 228 (355)
+...++.+.++++|||+|||+|..+..+|... .+|+++|+++.++ +++|++ . .+.. +.+..+|+.
T Consensus 281 l~~~~~~~~~~~~VLDlgcG~G~~sl~la~~~--~~V~gvD~s~~ai~~A~~n~~--~--ngl~-v~~~~~d~~~~~~~~ 353 (425)
T 2jjq_A 281 LVRKVSELVEGEKILDMYSGVGTFGIYLAKRG--FNVKGFDSNEFAIEMARRNVE--I--NNVD-AEFEVASDREVSVKG 353 (425)
T ss_dssp HHHHHHHHCCSSEEEEETCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHH--H--HTCC-EEEEECCTTTCCCTT
T ss_pred HHHHhhccCCCCEEEEeeccchHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHH--H--cCCc-EEEEECChHHcCccC
Confidence 33444446789999999999999999999864 6899999999999 888887 3 2444 677766653
Q ss_pred ----eeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 229 ----VVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 229 ----~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
.+|+|..|.. +.+..+++.++||| ++|.+|
T Consensus 354 fD~Vv~dPPr~g~~---------------------~~~~~~l~~l~p~g-ivyvsc 387 (425)
T 2jjq_A 354 FDTVIVDPPRAGLH---------------------PRLVKRLNREKPGV-IVYVSC 387 (425)
T ss_dssp CSEEEECCCTTCSC---------------------HHHHHHHHHHCCSE-EEEEES
T ss_pred CCEEEEcCCccchH---------------------HHHHHHHHhcCCCc-EEEEEC
Confidence 3677764332 11223334589976 566677
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.7e-06 Score=74.47 Aligned_cols=117 Identities=12% Similarity=-0.048 Sum_probs=74.3
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCC-Cc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSP-IQ 240 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG-~t 240 (355)
+.++.+|||+|||+|..+..++... ..|+++|+++.++ +++++. ++.+...|...++.+....- +.
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~---------~~~~~~~d~~~~~~~~~~~D~i~ 112 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQG--HDVLGTDLDPILIDYAKQDFP---------EARWVVGDLSVDQISETDFDLIV 112 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHCT---------TSEEEECCTTTSCCCCCCEEEEE
T ss_pred ccCCCeEEEECCCCCHHHHHHHHCC--CcEEEEcCCHHHHHHHHHhCC---------CCcEEEcccccCCCCCCceeEEE
Confidence 4688999999999999999998873 6899999999998 666554 13556666543221110000 00
Q ss_pred cCCc-cccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 241 NDGV-VHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 241 ~~~~-l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
...+ +.+... .....+|..+.++|+|||.+++++..... -....+...+++
T Consensus 113 ~~~~~~~~~~~-----~~~~~~l~~~~~~l~~~G~l~~~~~~~~~-~~~~~~~~~l~~ 164 (195)
T 3cgg_A 113 SAGNVMGFLAE-----DGREPALANIHRALGADGRAVIGFGAGRG-WVFGDFLEVAER 164 (195)
T ss_dssp ECCCCGGGSCH-----HHHHHHHHHHHHHEEEEEEEEEEEETTSS-CCHHHHHHHHHH
T ss_pred ECCcHHhhcCh-----HHHHHHHHHHHHHhCCCCEEEEEeCCCCC-cCHHHHHHHHHH
Confidence 0000 111100 11227899999999999999998765432 345556666654
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.47 E-value=3.9e-07 Score=91.43 Aligned_cols=101 Identities=10% Similarity=-0.007 Sum_probs=72.9
Q ss_pred HhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--H-------HhhccccccccC--cceEEEEEecce
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--L-------ALNIRPYDTVLD--IHALKLVKVGGS 228 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l-------~~~l~r~~~~~g--~~~v~~~~~Da~ 228 (355)
..+++++|++|||+|||+|..+..+|...+..+|+++|+++..+ + ++++. . .| ..++.++.+|+.
T Consensus 236 ~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~--~--~Gl~~~nV~~i~gD~~ 311 (433)
T 1u2z_A 236 QQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCK--L--YGMRLNNVEFSLKKSF 311 (433)
T ss_dssp HHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHH--H--TTBCCCCEEEEESSCS
T ss_pred HhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHH--H--cCCCCCceEEEEcCcc
Confidence 45678899999999999999999999877556899999999988 5 66666 3 35 467888887654
Q ss_pred e-----------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE
Q psy7769 229 V-----------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 229 ~-----------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs 278 (355)
. .|+..++.- + +. ..+...|..+.+.|||||+||.+
T Consensus 312 ~~~~~~~~~~~~FDvIvvn~~------l-~~-------~d~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 312 VDNNRVAELIPQCDVILVNNF------L-FD-------EDLNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp TTCHHHHHHGGGCSEEEECCT------T-CC-------HHHHHHHHHHHTTCCTTCEEEES
T ss_pred ccccccccccCCCCEEEEeCc------c-cc-------ccHHHHHHHHHHhCCCCeEEEEe
Confidence 2 111111000 0 11 12236788999999999999987
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.5e-07 Score=91.06 Aligned_cols=114 Identities=18% Similarity=0.051 Sum_probs=76.3
Q ss_pred HhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceee------
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVV------ 230 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~l------ 230 (355)
..+.+.+|.+|||+|||+|..+..+++.. ..+|+|+|+++ ++ ++++++ . .+. .++.++.+|+..+
T Consensus 58 ~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~v~gvD~s~-~~~~a~~~~~--~--~~~~~~i~~~~~d~~~~~~~~~~ 131 (340)
T 2fyt_A 58 QNPHIFKDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSE-ILYQAMDIIR--L--NKLEDTITLIKGKIEEVHLPVEK 131 (340)
T ss_dssp HCGGGTTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEESST-HHHHHHHHHH--H--TTCTTTEEEEESCTTTSCCSCSC
T ss_pred hhhhhcCCCEEEEeeccCcHHHHHHHHcC-CCEEEEEChHH-HHHHHHHHHH--H--cCCCCcEEEEEeeHHHhcCCCCc
Confidence 34456789999999999999999888873 35899999996 77 777776 3 243 5788998887543
Q ss_pred -ecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC--CCCCHH
Q psy7769 231 -YSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS--PIQNDG 289 (355)
Q Consensus 231 -DaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~--~~ENE~ 289 (355)
|.-.|. |-..-+.....+..+|..+.++|||||+++.+.|++. +.++..
T Consensus 132 ~D~Ivs~----------~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip~~~~~~~~~~~~~~ 183 (340)
T 2fyt_A 132 VDVIISE----------WMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLVAVSDVN 183 (340)
T ss_dssp EEEEEEC----------CCBTTBTTTCHHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHH
T ss_pred EEEEEEc----------CchhhccCHHHHHHHHHHHHhhcCCCcEEEcccceEEEEEecchh
Confidence 322211 1000011111233789999999999999996555442 345544
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.2e-07 Score=83.55 Aligned_cols=104 Identities=11% Similarity=0.019 Sum_probs=69.8
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCcc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQN 241 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~ 241 (355)
+.++.+|||+|||+|..+..++.. .+|+++|+++.++ +++++. . .+ .++.+...|...++.+- ..
T Consensus 31 ~~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~--~--~~-~~~~~~~~d~~~~~~~~-----~f 97 (243)
T 3d2l_A 31 VEPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAM--E--TN-RHVDFWVQDMRELELPE-----PV 97 (243)
T ss_dssp SCTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHH--H--TT-CCCEEEECCGGGCCCSS-----CE
T ss_pred cCCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhh--h--cC-CceEEEEcChhhcCCCC-----Cc
Confidence 456789999999999999888766 6999999999999 777665 2 12 35678888865432210 00
Q ss_pred CCccccc-hHHHHhh---hhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 242 DGVVHMS-LKRIWEE---TGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 242 ~~~l~~~-~~~l~~l---~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
++.+. ...+..+ .....+|+++.++|||||+++.++.+.
T Consensus 98 --D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 140 (243)
T 3d2l_A 98 --DAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSP 140 (243)
T ss_dssp --EEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred --CEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCH
Confidence 00000 0011111 122378999999999999999877653
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.3e-07 Score=80.78 Aligned_cols=100 Identities=8% Similarity=-0.011 Sum_probs=69.2
Q ss_pred HhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce----eeecc
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS----VVYST 233 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~----~lDaP 233 (355)
..+.+.++.+|||+|||+|..+..++... .+|+++|+++.++ ++++.. ++.+...|.. ..|.-
T Consensus 11 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~---------~v~~~~~d~~~~~~~~D~v 79 (170)
T 3i9f_A 11 PNIFEGKKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEKFD---------SVITLSDPKEIPDNSVDFI 79 (170)
T ss_dssp HHHHSSCCEEEEEETCTTCTTHHHHHTTE--EEEEEECSCHHHHHHHHHHCT---------TSEEESSGGGSCTTCEEEE
T ss_pred HhcCcCCCCeEEEECCCCCHHHHHHHhhc--CeEEEEeCCHHHHHHHHHhCC---------CcEEEeCCCCCCCCceEEE
Confidence 34457789999999999999999999877 4999999999988 555422 3455555510 02322
Q ss_pred cCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 234 CSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 234 CSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
.+... +......+.+|+++.+.|||||+++.++....
T Consensus 80 ~~~~~-------------l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 116 (170)
T 3i9f_A 80 LFANS-------------FHDMDDKQHVISEVKRILKDDGRVIIIDWRKE 116 (170)
T ss_dssp EEESC-------------STTCSCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred EEccc-------------hhcccCHHHHHHHHHHhcCCCCEEEEEEcCcc
Confidence 21111 11112233789999999999999999976654
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.44 E-value=3.1e-07 Score=84.59 Aligned_cols=110 Identities=12% Similarity=0.062 Sum_probs=72.2
Q ss_pred HHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhhHHhhccccccccCcceEEEEEecceeeecccC
Q psy7769 156 LLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKVGGSVVYSTCS 235 (355)
Q Consensus 156 ~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rll~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCS 235 (355)
......+.+.++.+|||+|||+|..+..+++. ..+|+++|+|+.++ ...+ . . .++.+...|+..+..+-
T Consensus 24 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~--~~a~--~---~-~~~~~~~~d~~~~~~~~- 92 (261)
T 3ege_A 24 NAIINLLNLPKGSVIADIGAGTGGYSVALANQ--GLFVYAVEPSIVMR--QQAV--V---H-PQVEWFTGYAENLALPD- 92 (261)
T ss_dssp HHHHHHHCCCTTCEEEEETCTTSHHHHHHHTT--TCEEEEECSCHHHH--HSSC--C---C-TTEEEECCCTTSCCSCT-
T ss_pred HHHHHHhCCCCCCEEEEEcCcccHHHHHHHhC--CCEEEEEeCCHHHH--HHHH--h---c-cCCEEEECchhhCCCCC-
Confidence 34455667788999999999999999999873 37999999999877 1122 1 0 15778888875432211
Q ss_pred CCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 236 LSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 236 gsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
+ + -++.+...-+........+|+++.+.|| ||.++..++..
T Consensus 93 --~-~--fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~ 133 (261)
T 3ege_A 93 --K-S--VDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDI 133 (261)
T ss_dssp --T-C--BSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECG
T ss_pred --C-C--EeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCC
Confidence 1 1 1111111112222333488999999999 99998888763
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.43 E-value=2.8e-07 Score=82.72 Aligned_cols=102 Identities=14% Similarity=0.019 Sum_probs=69.3
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccCC
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDG 243 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~~ 243 (355)
++.+|||+|||+|..+..+++.. .+|+++|+++.++ +++++. . .+. ++.+...|...++.+. . -
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~--~~~~~~D~s~~~~~~a~~~~~--~--~~~-~~~~~~~d~~~~~~~~-----~--f 102 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFR--S--QGL-KPRLACQDISNLNINR-----K--F 102 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHH--H--TTC-CCEEECCCGGGCCCSC-----C--E
T ss_pred CCCeEEEeCCCCCHHHHHHHHCC--CcEEEEECCHHHHHHHHHHHh--h--cCC-CeEEEecccccCCccC-----C--c
Confidence 78899999999999999988774 6899999999999 666665 2 222 5677777765432220 0 0
Q ss_pred ccccchH-HHHhh---hhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 244 VVHMSLK-RIWEE---TGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 244 ~l~~~~~-~l~~l---~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
++.+... -+..+ .....+|+++.++|||||.++.++..
T Consensus 103 D~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (246)
T 1y8c_A 103 DLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp EEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred eEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 0111111 12222 22338899999999999999986643
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.8e-07 Score=79.86 Aligned_cols=120 Identities=14% Similarity=0.001 Sum_probs=73.6
Q ss_pred hhcHHHHHhhCC--CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh-HHhhccccccccCcceEEEEEeccee
Q psy7769 153 GASLLPVLALNI--RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV-LALNIRPYDTVLDIHALKLVKVGGSV 229 (355)
Q Consensus 153 ~aS~l~~~~L~~--~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl-l~~~l~r~~~~~g~~~v~~~~~Da~~ 229 (355)
+.+.+.+..+.. .++.+|||+|||+|..+..++... +|+|+|+++.++ . . .++.++.+|+..
T Consensus 8 ~~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~----~--------~~~~~~~~d~~~ 72 (170)
T 3q87_B 8 EDTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES----H--------RGGNLVRADLLC 72 (170)
T ss_dssp HHHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT----C--------SSSCEEECSTTT
T ss_pred ccHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc----c--------cCCeEEECChhh
Confidence 334444444655 678899999999999999988765 999999999988 5 1 123455555532
Q ss_pred ------eecccCCCCCccCCccccchHHHHhhhh--HHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 230 ------VYSTCSLSPIQNDGVVHMSLKRIWEETG--CEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 230 ------lDaPCSgsG~t~~~~l~~~~~~l~~l~~--lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
.|.-.+... +.|..+....... ..+++..+++.+ |||+++.++.+. .+...+..++++
T Consensus 73 ~~~~~~fD~i~~n~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~---~~~~~l~~~l~~ 138 (170)
T 3q87_B 73 SINQESVDVVVFNPP------YVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA---NRPKEVLARLEE 138 (170)
T ss_dssp TBCGGGCSEEEECCC------CBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG---GCHHHHHHHHHH
T ss_pred hcccCCCCEEEECCC------CccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC---CCHHHHHHHHHH
Confidence 222221111 1111110000000 015677777777 999999988766 556667777764
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.4e-07 Score=94.35 Aligned_cols=141 Identities=16% Similarity=0.100 Sum_probs=90.1
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhc-------------CCCcEEEEcCCchhh--HHhhccccc
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTL-------------YPDYYCMDGASLLPV--LALNIRPYD 212 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~-------------~~g~V~AvD~s~~Rl--l~~~l~r~~ 212 (355)
||--..-+.+.+.++.+.+|.+|||.|||+|+....++..+ ....++++|+++..+ ++.|+. .
T Consensus 153 fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~--l 230 (445)
T 2okc_A 153 YFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY--L 230 (445)
T ss_dssp GCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH--H
T ss_pred ccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHH--H
Confidence 45444555667778889999999999999999999888753 236899999999988 566654 1
Q ss_pred cccCcc--eEEEEEecc-----------eeeecccCCCCCccCCc-cccchHHHHhhhhHH-HHHHHHHhhccCCcEEEE
Q psy7769 213 TVLDIH--ALKLVKVGG-----------SVVYSTCSLSPIQNDGV-VHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVY 277 (355)
Q Consensus 213 ~~~g~~--~v~~~~~Da-----------~~lDaPCSgsG~t~~~~-l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVY 277 (355)
.|.. ++.+.++|. ...+||.++... .... .+.... ......+ ..+.+++++|||||++++
T Consensus 231 --~g~~~~~~~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~-~~~~~~~~~~~--~~~~~~~~~fl~~~~~~Lk~gG~~a~ 305 (445)
T 2okc_A 231 --HGIGTDRSPIVCEDSLEKEPSTLVDVILANPPFGTRPA-GSVDINRPDFY--VETKNNQLNFLQHMMLMLKTGGRAAV 305 (445)
T ss_dssp --TTCCSSCCSEEECCTTTSCCSSCEEEEEECCCSSCCCT-TCCCCCCTTSS--SCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred --hCCCcCCCCEeeCCCCCCcccCCcCEEEECCCCCCccc-ccchhhHhhcC--CCCcchHHHHHHHHHHHhccCCEEEE
Confidence 2332 344555443 347778765441 1111 110000 0012234 779999999999999999
Q ss_pred EeCC--CCCCCCHHHHHHHH
Q psy7769 278 STCS--LSPIQNDGVVHMSL 295 (355)
Q Consensus 278 sTCS--l~~~ENE~vV~~~L 295 (355)
.++. ++....+..+.+.|
T Consensus 306 V~p~~~L~~~~~~~~iR~~L 325 (445)
T 2okc_A 306 VLPDNVLFEAGAGETIRKRL 325 (445)
T ss_dssp EEEHHHHHCSTHHHHHHHHH
T ss_pred EECCcccccCcHHHHHHHHH
Confidence 8865 33333344555544
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.42 E-value=4.5e-07 Score=81.30 Aligned_cols=99 Identities=11% Similarity=-0.018 Sum_probs=68.2
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceee------ecccCC
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVV------YSTCSL 236 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~l------DaPCSg 236 (355)
.++.+|||+|||+|..+..++... ..|+++|+++.++ +++++. ++.+...|...+ |.-.+.
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~~---------~~~~~~~d~~~~~~~~~~D~v~~~ 107 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEF--GDTAGLELSEDMLTHARKRLP---------DATLHQGDMRDFRLGRKFSAVVSM 107 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHH--SEEEEEESCHHHHHHHHHHCT---------TCEEEECCTTTCCCSSCEEEEEEC
T ss_pred CCCCeEEEecccCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhCC---------CCEEEECCHHHcccCCCCcEEEEc
Confidence 578899999999999999999876 4899999999999 555543 246666676432 222211
Q ss_pred CCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 237 SPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 237 sG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
.+ .+.+-+ .......+|+++.++|||||.++.+++...
T Consensus 108 ~~-----~~~~~~----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 145 (239)
T 3bxo_A 108 FS-----SVGYLK----TTEELGAAVASFAEHLEPGGVVVVEPWWFP 145 (239)
T ss_dssp TT-----GGGGCC----SHHHHHHHHHHHHHTEEEEEEEEECCCCCT
T ss_pred Cc-----hHhhcC----CHHHHHHHHHHHHHhcCCCeEEEEEeccCc
Confidence 11 011110 001223789999999999999999887653
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1.7e-07 Score=85.85 Aligned_cols=46 Identities=17% Similarity=0.003 Sum_probs=38.9
Q ss_pred CCCCCeEeeecccCcchHHHHHHh--cCCCcEEEEcCCchhh--HHhhcc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQT--LYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~--~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
..++.+|||+|||+|..+..++.. ....+|+|+|+|+.++ +++++.
T Consensus 49 ~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~ 98 (250)
T 1o9g_A 49 GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLA 98 (250)
T ss_dssp CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHH
Confidence 346789999999999999999887 3346899999999999 777766
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=4.4e-07 Score=86.80 Aligned_cols=64 Identities=14% Similarity=0.103 Sum_probs=52.3
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEec
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVG 226 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~D 226 (355)
++..|++++|.+|||+|||+|+.|..++..++.++|+|+|.|+.++ ++++++ . .+ .++.++++|
T Consensus 18 ~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~--~--~g-~~v~~v~~d 83 (301)
T 1m6y_A 18 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLK--E--FS-DRVSLFKVS 83 (301)
T ss_dssp HHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTG--G--GT-TTEEEEECC
T ss_pred HHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH--h--cC-CcEEEEECC
Confidence 4566788999999999999999999999987568999999999999 788887 3 23 456665544
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=6.4e-07 Score=84.27 Aligned_cols=114 Identities=18% Similarity=-0.044 Sum_probs=76.0
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcccccccc-------CcceEEEEEeccee------
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVL-------DIHALKLVKVGGSV------ 229 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~-------g~~~v~~~~~Da~~------ 229 (355)
..+.+|||+|||+|+.+..++.. +.++|+++|+++..+ +++++ ++.... ..++++++..|+..
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~ 151 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR 151 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcccC
Confidence 45679999999999999999887 557999999999999 77776 221001 23568888777632
Q ss_pred ------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHH
Q psy7769 230 ------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLK 296 (355)
Q Consensus 230 ------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~ 296 (355)
+|+|+. .| + ...+ -..++++.+.+.|+|||.++..+++.. .+...+..+.+
T Consensus 152 ~fD~Ii~d~~~~-~~----------~--~~~l-~~~~~l~~~~~~L~pgG~lv~~~~~~~--~~~~~~~~~~~ 208 (281)
T 1mjf_A 152 GFDVIIADSTDP-VG----------P--AKVL-FSEEFYRYVYDALNNPGIYVTQAGSVY--LFTDELISAYK 208 (281)
T ss_dssp CEEEEEEECCCC-C-----------------T-TSHHHHHHHHHHEEEEEEEEEEEEETT--TSHHHHHHHHH
T ss_pred CeeEEEECCCCC-CC----------c--chhh-hHHHHHHHHHHhcCCCcEEEEEcCCcc--cCHHHHHHHHH
Confidence 444431 11 1 0000 012789999999999999999887753 24444444444
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.6e-07 Score=90.51 Aligned_cols=117 Identities=14% Similarity=0.049 Sum_probs=76.4
Q ss_pred hCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccCCCC
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLSP 238 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG 238 (355)
+...+|.+|||+|||+|..+..+++.. ..+|+|+|++ .++ ++++++ . .+. .+++++.+|...++.|-
T Consensus 59 ~~~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~a~~~~~--~--~~~~~~v~~~~~d~~~~~~~~---- 128 (376)
T 3r0q_C 59 KHHFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMADHARALVK--A--NNLDHIVEVIEGSVEDISLPE---- 128 (376)
T ss_dssp TTTTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESS-TTHHHHHHHHH--H--TTCTTTEEEEESCGGGCCCSS----
T ss_pred cccCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccH-HHHHHHHHHHH--H--cCCCCeEEEEECchhhcCcCC----
Confidence 456789999999999999999998874 3599999999 888 777776 3 233 34889998886543331
Q ss_pred CccCCc-cccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC--CCCCCHH
Q psy7769 239 IQNDGV-VHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL--SPIQNDG 289 (355)
Q Consensus 239 ~t~~~~-l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl--~~~ENE~ 289 (355)
..+-- ..|-..-+.....+..++..+.++|||||.++.+.+++ .+.+.+.
T Consensus 129 -~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~ 181 (376)
T 3r0q_C 129 -KVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHARMWLAPIKSNI 181 (376)
T ss_dssp -CEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEEEEEEEECCTH
T ss_pred -cceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCeEEEEeecchH
Confidence 00000 00100000000122378889999999999999877664 3444443
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.6e-06 Score=84.89 Aligned_cols=136 Identities=11% Similarity=-0.045 Sum_probs=85.1
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh-HHhhccccccccCcceEEEEE-
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV-LALNIRPYDTVLDIHALKLVK- 224 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl-l~~~l~r~~~~~g~~~v~~~~- 224 (355)
||--..-..+.+..+.+.++.+|||+|||+|+.+..+++.. ....|+|+|+++.++ +..+ +.+.+
T Consensus 21 ~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a~~------------~~~~~~ 88 (421)
T 2ih2_A 21 VETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPW------------AEGILA 88 (421)
T ss_dssp CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTT------------EEEEES
T ss_pred EeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhCCC------------CcEEeC
Confidence 55445555566666666667899999999999999999875 447999999999887 3222 23333
Q ss_pred ----------ecceeeecccCCCCCccCCcc--ccchHHHH----------hhhhHH-HHHHHHHhhccCCcEEEEEeCC
Q psy7769 225 ----------VGGSVVYSTCSLSPIQNDGVV--HMSLKRIW----------EETGCE-IEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 225 ----------~Da~~lDaPCSgsG~t~~~~l--~~~~~~l~----------~l~~lQ-~lL~~A~~~LkpGG~lVYsTCS 281 (355)
.|....+||....+.. .++ +...+... ...+++ .++.++.++|+|||++++.++.
T Consensus 89 D~~~~~~~~~fD~Ii~NPPy~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 89 DFLLWEPGEAFDLILGNPPYGIVGEA--SKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 166 (421)
T ss_dssp CGGGCCCSSCEEEEEECCCCCCBSCT--TTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred ChhhcCccCCCCEEEECcCccCcccc--cccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence 3444477887544310 000 01111100 112345 7899999999999999999876
Q ss_pred C-CCCCCHHHHHHHHHh
Q psy7769 282 L-SPIQNDGVVHMSLKR 297 (355)
Q Consensus 282 l-~~~ENE~vV~~~L~~ 297 (355)
- ...+....+...|.+
T Consensus 167 ~~l~~~~~~~lr~~l~~ 183 (421)
T 2ih2_A 167 TWLVLEDFALLREFLAR 183 (421)
T ss_dssp GGGTCGGGHHHHHHHHH
T ss_pred HHhcCccHHHHHHHHHh
Confidence 2 222233445555543
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=98.36 E-value=3.2e-07 Score=88.90 Aligned_cols=114 Identities=14% Similarity=0.047 Sum_probs=77.2
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecc--
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYST-- 233 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaP-- 233 (355)
...+...+|.+|||+|||+|..+..+++. +.++|+|+|.++ ++ ++++++ . .+. .++.++..|...++.|
T Consensus 43 ~~~l~~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a~~~~~--~--~~l~~~v~~~~~d~~~~~~~~~ 116 (348)
T 2y1w_A 43 LQNHTDFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVK--S--NNLTDRIVVIPGKVEEVSLPEQ 116 (348)
T ss_dssp HHTGGGTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHH--H--TTCTTTEEEEESCTTTCCCSSC
T ss_pred HhccccCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHHHHHHH--H--cCCCCcEEEEEcchhhCCCCCc
Confidence 34455678999999999999999988876 336999999996 66 777776 3 244 5688988887653322
Q ss_pred ----cCC-CCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC--CCCCHHH
Q psy7769 234 ----CSL-SPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS--PIQNDGV 290 (355)
Q Consensus 234 ----CSg-sG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~--~~ENE~v 290 (355)
.|. .+ .++..+ ...+.+.++.++|||||.++.+++++. +.+.+..
T Consensus 117 ~D~Ivs~~~~------~~~~~~------~~~~~l~~~~~~LkpgG~li~~~~~~~~~~i~~~~~ 168 (348)
T 2y1w_A 117 VDIIISEPMG------YMLFNE------RMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQL 168 (348)
T ss_dssp EEEEEECCCB------TTBTTT------SHHHHHHHGGGGEEEEEEEESCEEEEEEEEECCHHH
T ss_pred eeEEEEeCch------hcCChH------HHHHHHHHHHhhcCCCeEEEEecCcEEEEEecchHH
Confidence 211 00 011111 112567788999999999998877764 4455543
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.35 E-value=3.7e-07 Score=83.81 Aligned_cols=91 Identities=12% Similarity=0.042 Sum_probs=58.0
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEE-e-------cceeeecccC
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVK-V-------GGSVVYSTCS 235 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~-~-------Da~~lDaPCS 235 (355)
+|.+|||+|||+|+.|..+++.. ..+|+|+|+++.++ .+++..+... .+..++.... . |...+|...+
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis~~ml~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~D~v~~ 114 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVGTNQLAWKIRSDERVVV-MEQFNFRNAVLADFEQGRPSFTSIDVSFI 114 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSCCCCCHHHHTCTTEEE-ECSCCGGGCCGGGCCSCCCSEEEECCSSS
T ss_pred CCCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCCHHHHHHHHHhCccccc-cccceEEEeCHhHcCcCCCCEEEEEEEhh
Confidence 57799999999999999998873 35999999999999 3444331100 0001111111 1 1111333221
Q ss_pred CCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 236 LSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 236 gsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
. +..+|..+.++|||||+++..+
T Consensus 115 ~---------------------l~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 115 S---------------------LDLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp C---------------------GGGTHHHHHHHSCTTCEEEEEE
T ss_pred h---------------------HHHHHHHHHHhccCCCEEEEEE
Confidence 1 1267999999999999999964
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.34 E-value=5.8e-07 Score=84.26 Aligned_cols=106 Identities=11% Similarity=-0.069 Sum_probs=63.8
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEE--Eeccee-----eecc
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLV--KVGGSV-----VYST 233 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~--~~Da~~-----lDaP 233 (355)
.+++|++|||+|||||+.|..+++. ++|+|+|+++ ++ ++++..... ..+ .++.++ ++|+.. +|..
T Consensus 71 ~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~~~-~~~-~~v~~~~~~~D~~~l~~~~fD~V 144 (265)
T 2oxt_A 71 YVELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRITE-SYG-WNIVKFKSRVDIHTLPVERTDVI 144 (265)
T ss_dssp SCCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCCCC-BTT-GGGEEEECSCCTTTSCCCCCSEE
T ss_pred CCCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhhhhhhh-ccC-CCeEEEecccCHhHCCCCCCcEE
Confidence 3678999999999999999988876 7999999998 43 221111000 011 156777 677653 3333
Q ss_pred cCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCc--EEEEEeCC
Q psy7769 234 CSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGG--SVVYSTCS 281 (355)
Q Consensus 234 CSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG--~lVYsTCS 281 (355)
.|..+ ... ..|..+ ....+ .+|..+.++||||| .++..+-.
T Consensus 145 ~sd~~-~~~--~~~~~d---~~~~l-~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 145 MCDVG-ESS--PKWSVE---SERTI-KILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp EECCC-CCC--SCHHHH---HHHHH-HHHHHHHHHHHHCTTCEEEEEESC
T ss_pred EEeCc-ccC--Cccchh---HHHHH-HHHHHHHHHhccCCCeEEEEEeCC
Confidence 32211 000 001111 10001 37889999999999 99986644
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=7.1e-07 Score=83.61 Aligned_cols=102 Identities=11% Similarity=0.032 Sum_probs=64.5
Q ss_pred CCCCCeEeeecccCcchHHHHHHh----cCCCcE--EEEcCCchhh--HHhhccccccccCcceEEEE--Eeccee----
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQT----LYPDYY--CMDGASLLPV--LALNIRPYDTVLDIHALKLV--KVGGSV---- 229 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~----~~~g~V--~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~--~~Da~~---- 229 (355)
+.++.+|||+|||+|..|..++.. .....| +++|.|+.++ +++++.. . .+..++.+. ..|+..
T Consensus 50 ~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~-~--~~~~~v~~~~~~~~~~~~~~~ 126 (292)
T 2aot_A 50 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAK-T--SNLENVKFAWHKETSSEYQSR 126 (292)
T ss_dssp TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHT-C--SSCTTEEEEEECSCHHHHHHH
T ss_pred CCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHh-c--cCCCcceEEEEecchhhhhhh
Confidence 467889999999999887755432 233544 9999999999 6666641 1 133445443 333211
Q ss_pred ---------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 230 ---------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 230 ---------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
.|...+... +......+..|+++.++|||||+++.++.+
T Consensus 127 ~~~~~~~~~fD~V~~~~~-------------l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~ 174 (292)
T 2aot_A 127 MLEKKELQKWDFIHMIQM-------------LYYVKDIPATLKFFHSLLGTNAKMLIIVVS 174 (292)
T ss_dssp HHTTTCCCCEEEEEEESC-------------GGGCSCHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred hccccCCCceeEEEEeee-------------eeecCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 222221111 222233347899999999999999988644
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.33 E-value=3.5e-07 Score=87.16 Aligned_cols=37 Identities=22% Similarity=0.111 Sum_probs=33.4
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
+|.+|||+|||+|+.|..+++.. .++|+|+|+++.++
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~g-a~~V~aVDvs~~mL 121 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNG-AKLVYAVDVGTNQL 121 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSSSCS
T ss_pred cccEEEecCCCccHHHHHHHhCC-CCEEEEEECCHHHH
Confidence 57899999999999999988873 46999999999999
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.9e-06 Score=80.77 Aligned_cols=106 Identities=8% Similarity=-0.088 Sum_probs=69.4
Q ss_pred CCCeEeeecccC---cchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeec----c---
Q psy7769 166 PYDTVLDMCAAP---GGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYS----T--- 233 (355)
Q Consensus 166 pG~~VLD~CAgP---GgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDa----P--- 233 (355)
+..+|||+|||+ |..+..+++....++|+++|+|+.++ +++++. . ..++.++.+|....+. |
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~--~----~~~v~~~~~D~~~~~~~~~~~~~~ 150 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLA--K----DPNTAVFTADVRDPEYILNHPDVR 150 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHT--T----CTTEEEEECCTTCHHHHHHSHHHH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcC--C----CCCeEEEEeeCCCchhhhccchhh
Confidence 447999999999 98665555555558999999999999 666665 2 2468899999754211 0
Q ss_pred ----c-CCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 234 ----C-SLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 234 ----C-SgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
. +-..+.....++|-++. ..+.+|+++.+.|||||+|+.++...
T Consensus 151 ~~~d~~~~d~v~~~~vlh~~~d~-----~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 151 RMIDFSRPAAIMLVGMLHYLSPD-----VVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp HHCCTTSCCEEEETTTGGGSCTT-----THHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred ccCCCCCCEEEEEechhhhCCcH-----HHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 0 00000000012222211 12378999999999999999998765
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=2.1e-06 Score=82.96 Aligned_cols=106 Identities=12% Similarity=0.008 Sum_probs=75.8
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEeccee-----
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSV----- 229 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~----- 229 (355)
.+..++..++.+|||+|||+|..+..++......+++++|+ +..+ +++++. . .+. .++.+...|...
T Consensus 174 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~--~--~~~~~~v~~~~~d~~~~~~~~ 248 (374)
T 1qzz_A 174 PADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFA--D--AGLADRVTVAEGDFFKPLPVT 248 (374)
T ss_dssp HHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHH--H--TTCTTTEEEEECCTTSCCSCC
T ss_pred HHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHH--h--cCCCCceEEEeCCCCCcCCCC
Confidence 34455677889999999999999999998876679999999 8888 777776 2 233 368899888743
Q ss_pred eecccCCCCCccCCccc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 230 VYSTCSLSPIQNDGVVH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 230 lDaPCSgsG~t~~~~l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
.|.-.+. ..++ |..... .++|+++.+.|||||+++....
T Consensus 249 ~D~v~~~------~vl~~~~~~~~------~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 249 ADVVLLS------FVLLNWSDEDA------LTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp EEEEEEE------SCGGGSCHHHH------HHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCEEEEe------ccccCCCHHHH------HHHHHHHHHhcCCCcEEEEEec
Confidence 2222110 0021 332211 1789999999999999998876
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.32 E-value=5.7e-07 Score=81.04 Aligned_cols=108 Identities=14% Similarity=-0.005 Sum_probs=69.8
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-eecccCCCCCc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV-VYSTCSLSPIQ 240 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~-lDaPCSgsG~t 240 (355)
+.+|.+|||+|||+|..+..++... .+|+++|+++.++ ++++.. ++.++..|... +..+. .+
T Consensus 46 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~---------~~~~~~~d~~~~~~~~~--~~-- 110 (226)
T 3m33_A 46 LTPQTRVLEAGCGHGPDAARFGPQA--ARWAAYDFSPELLKLARANAP---------HADVYEWNGKGELPAGL--GA-- 110 (226)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHCT---------TSEEEECCSCSSCCTTC--CC--
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhCC---------CceEEEcchhhccCCcC--CC--
Confidence 4688999999999999999998873 7999999999999 555522 35677777631 11110 00
Q ss_pred cCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 241 NDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 241 ~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
.-++.+.. .....+|+++.++|||||+++.... ..+...+...+.+
T Consensus 111 -~fD~v~~~------~~~~~~l~~~~~~LkpgG~l~~~~~----~~~~~~~~~~l~~ 156 (226)
T 3m33_A 111 -PFGLIVSR------RGPTSVILRLPELAAPDAHFLYVGP----RLNVPEVPERLAA 156 (226)
T ss_dssp -CEEEEEEE------SCCSGGGGGHHHHEEEEEEEEEEES----SSCCTHHHHHHHH
T ss_pred -CEEEEEeC------CCHHHHHHHHHHHcCCCcEEEEeCC----cCCHHHHHHHHHH
Confidence 00111111 0111668899999999999993222 2344456666664
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=7.6e-07 Score=83.98 Aligned_cols=105 Identities=10% Similarity=-0.017 Sum_probs=63.8
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEE--Eeccee-----eeccc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLV--KVGGSV-----VYSTC 234 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~--~~Da~~-----lDaPC 234 (355)
+++|.+|||+|||||+.|..+++. ++|+|+|+++ ++ ++++...... .+ .++.++ ++|... +|...
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~~~~-~~-~~v~~~~~~~D~~~l~~~~fD~Vv 153 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRLVET-FG-WNLITFKSKVDVTKMEPFQADTVL 153 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCCCCC-TT-GGGEEEECSCCGGGCCCCCCSEEE
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhchhhhhh-cC-CCeEEEeccCcHhhCCCCCcCEEE
Confidence 578999999999999999998876 7999999998 44 2222110000 11 156777 777654 33333
Q ss_pred CCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCc--EEEEEeCC
Q psy7769 235 SLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGG--SVVYSTCS 281 (355)
Q Consensus 235 SgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG--~lVYsTCS 281 (355)
|..+ .... .|..+ ....+ .+|..+.++||||| .++..+.+
T Consensus 154 sd~~-~~~~--~~~~d---~~~~l-~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 154 CDIG-ESNP--TAAVE---ASRTL-TVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp ECCC-CCCS--CHHHH---HHHHH-HHHHHHHHHHHHSTTCEEEEEESC
T ss_pred ECCC-cCCC--chhhh---HHHHH-HHHHHHHHHhccCCCcEEEEEeCC
Confidence 2211 0000 01111 10001 37889999999999 99986654
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=6.8e-07 Score=81.90 Aligned_cols=96 Identities=9% Similarity=-0.075 Sum_probs=66.0
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee------eecccCC
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------VYSTCSL 236 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------lDaPCSg 236 (355)
.++.+|||+|||+|..+..++... ..|+++|+++.++ +++++. ++.++..|... .|+..+.
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~---------~~~~~~~d~~~~~~~~~fD~v~~~ 117 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNP---------DAVLHHGDMRDFSLGRRFSAVTCM 117 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCT---------TSEEEECCTTTCCCSCCEEEEEEC
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCC---------CCEEEECChHHCCccCCcCEEEEc
Confidence 467899999999999999988764 5899999999999 555544 24667777643 3333221
Q ss_pred CCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 237 SPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 237 sG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
.+ .+.+- .....+..+|+++.++|||||.++.++.
T Consensus 118 ~~-----~l~~~----~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 152 (263)
T 3pfg_A 118 FS-----SIGHL----AGQAELDAALERFAAHVLPDGVVVVEPW 152 (263)
T ss_dssp TT-----GGGGS----CHHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred Cc-----hhhhc----CCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 11 01111 0111233789999999999999999754
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.30 E-value=7.8e-07 Score=80.53 Aligned_cols=92 Identities=9% Similarity=-0.107 Sum_probs=63.7
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee---------eec
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV---------VYS 232 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~---------lDa 232 (355)
++++.+|||+|||+|..+..+++.. .+|+++|+|+.++ +++++ .++..|... +|.
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~------------~~~~~d~~~~~~~~~~~~fD~ 104 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEEG--IESIGVDINEDMIKFCEGKF------------NVVKSDAIEYLKSLPDKYLDG 104 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHHT--CCEEEECSCHHHHHHHHTTS------------EEECSCHHHHHHTSCTTCBSE
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhCC--CcEEEEECCHHHHHHHHhhc------------ceeeccHHHHhhhcCCCCeeE
Confidence 5688999999999999999888873 6899999999988 44442 233344322 222
Q ss_pred ccCCCCCccCCccccchHHHHhhh--hHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 233 TCSLSPIQNDGVVHMSLKRIWEET--GCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 233 PCSgsG~t~~~~l~~~~~~l~~l~--~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
-.+.. -+..+. .+..+|+++.++|||||.++.++...
T Consensus 105 i~~~~-------------~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 143 (240)
T 3dli_A 105 VMISH-------------FVEHLDPERLFELLSLCYSKMKYSSYIVIESPNP 143 (240)
T ss_dssp EEEES-------------CGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECT
T ss_pred EEECC-------------chhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 22111 111112 23378999999999999999988653
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=2.4e-07 Score=89.80 Aligned_cols=111 Identities=13% Similarity=0.032 Sum_probs=72.2
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccCCCCC
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLSPI 239 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG~ 239 (355)
.+.+|.+|||+|||+|..+..+++. +..+|+|+|++ .++ ++++++ . .+. .++.++.+|...+..|- +
T Consensus 63 ~~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s-~~l~~a~~~~~--~--~~~~~~v~~~~~d~~~~~~~~---~- 132 (349)
T 3q7e_A 63 HLFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECS-SISDYAVKIVK--A--NKLDHVVTIIKGKVEEVELPV---E- 132 (349)
T ss_dssp HHHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECS-THHHHHHHHHH--H--TTCTTTEEEEESCTTTCCCSS---S-
T ss_pred ccCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcH-HHHHHHHHHHH--H--cCCCCcEEEEECcHHHccCCC---C-
Confidence 3568899999999999999999887 34699999999 477 777776 3 243 34889998876533220 0
Q ss_pred ccCCcc-ccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 240 QNDGVV-HMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 240 t~~~~l-~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
..+--+ .|-..-+.....+..++..+.++|||||.++.+.+++.
T Consensus 133 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~~~~ 177 (349)
T 3q7e_A 133 KVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLY 177 (349)
T ss_dssp CEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEEEEE
T ss_pred ceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEccccceEE
Confidence 000000 01000011111233788999999999999997777654
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=98.29 E-value=3.3e-07 Score=84.84 Aligned_cols=116 Identities=16% Similarity=0.114 Sum_probs=67.0
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccC------------------------
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLD------------------------ 216 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g------------------------ 216 (355)
.+.+|.+|||+|||+|..+..++... -..|+|+|+|+.++ ++++++.......
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~~-~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 130 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHhh-hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHH
Confidence 46689999999999998776655442 14799999999999 6666541000000
Q ss_pred -cceEE-EEEecceeeecccC-CCCCccCCcc-ccchHHH-HhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 217 -IHALK-LVKVGGSVVYSTCS-LSPIQNDGVV-HMSLKRI-WEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 217 -~~~v~-~~~~Da~~lDaPCS-gsG~t~~~~l-~~~~~~l-~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
..++. ++..|....++.-. ..+ +.+--+ .+....+ .....+..+|+++.++|||||+++.++.
T Consensus 131 ~~~~i~~~~~~D~~~~~~~~~~~~~-~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~ 198 (263)
T 2a14_A 131 LRAAVKRVLKCDVHLGNPLAPAVLP-LADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT 198 (263)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCC-CEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred HHhhhheEEeccccCCCCCCccccC-CCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 01243 66777543221100 001 111100 0111111 1112333889999999999999999974
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=2.1e-06 Score=82.79 Aligned_cols=113 Identities=9% Similarity=0.045 Sum_probs=77.4
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccC
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCS 235 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCS 235 (355)
+..++..++.+|||+|||+|..+..++...+..+++++|+ +..+ +++++. . .+. .++++..+|......|-
T Consensus 183 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~--~--~~~~~~v~~~~~d~~~~~~~~- 256 (359)
T 1x19_A 183 LEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAA--E--KGVADRMRGIAVDIYKESYPE- 256 (359)
T ss_dssp HHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHH--H--TTCTTTEEEEECCTTTSCCCC-
T ss_pred HHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHH--h--cCCCCCEEEEeCccccCCCCC-
Confidence 3445677889999999999999999999876679999999 8888 777776 3 233 34899999875432111
Q ss_pred CCCCccCCccc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 236 LSPIQNDGVVH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 236 gsG~t~~~~l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
+.-+.....++ |..+. ..++|+++.+.|||||+++.......
T Consensus 257 ~D~v~~~~vlh~~~d~~------~~~~l~~~~~~L~pgG~l~i~e~~~~ 299 (359)
T 1x19_A 257 ADAVLFCRILYSANEQL------STIMCKKAFDAMRSGGRLLILDMVID 299 (359)
T ss_dssp CSEEEEESCGGGSCHHH------HHHHHHHHHTTCCTTCEEEEEEECCC
T ss_pred CCEEEEechhccCCHHH------HHHHHHHHHHhcCCCCEEEEEecccC
Confidence 00000000011 33221 22789999999999999988776553
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.28 E-value=3.7e-07 Score=87.68 Aligned_cols=116 Identities=11% Similarity=0.004 Sum_probs=74.3
Q ss_pred hCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccCCCC
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLSP 238 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG 238 (355)
+...++.+|||+|||+|..+..+++.. ..+|+|+|++ .++ ++++++ . .+. .++.++.+|+..++.|-.
T Consensus 34 ~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~v~~vD~s-~~~~~a~~~~~--~--~~~~~~i~~~~~d~~~~~~~~~--- 104 (328)
T 1g6q_1 34 KDLFKDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMS-SIIEMAKELVE--L--NGFSDKITLLRGKLEDVHLPFP--- 104 (328)
T ss_dssp HHHHTTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESS-THHHHHHHHHH--H--TTCTTTEEEEESCTTTSCCSSS---
T ss_pred HhhcCCCEEEEecCccHHHHHHHHHCC-CCEEEEEChH-HHHHHHHHHHH--H--cCCCCCEEEEECchhhccCCCC---
Confidence 445678999999999999998888763 3589999999 567 777776 2 233 458888888754332210
Q ss_pred CccCCccc---cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC--CCCCHH
Q psy7769 239 IQNDGVVH---MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS--PIQNDG 289 (355)
Q Consensus 239 ~t~~~~l~---~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~--~~ENE~ 289 (355)
.-++. |-...+.....+..+|..+.++|||||.++.+++++. +.+...
T Consensus 105 ---~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~ 157 (328)
T 1g6q_1 105 ---KVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQ 157 (328)
T ss_dssp ---CEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHH
T ss_pred ---cccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEEeeceEEEEEecCch
Confidence 00000 0000011111233778889999999999997766643 335443
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.9e-06 Score=76.09 Aligned_cols=97 Identities=14% Similarity=-0.023 Sum_probs=65.1
Q ss_pred HhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee--------
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV-------- 229 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~-------- 229 (355)
..+...++.+|||+|||+|..+..++... .+|+++|+++.++ ++++ . . +.+...|...
T Consensus 46 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-~--~-------~~~~~~~~~~~~~~~~~~ 113 (227)
T 3e8s_A 46 LAILGRQPERVLDLGCGEGWLLRALADRG--IEAVGVDGDRTLVDAARAA-G--A-------GEVHLASYAQLAEAKVPV 113 (227)
T ss_dssp HHHHHTCCSEEEEETCTTCHHHHHHHTTT--CEEEEEESCHHHHHHHHHT-C--S-------SCEEECCHHHHHTTCSCC
T ss_pred HHhhcCCCCEEEEeCCCCCHHHHHHHHCC--CEEEEEcCCHHHHHHHHHh-c--c-------cccchhhHHhhccccccc
Confidence 33445677999999999999999988773 6899999999998 5444 2 1 1233333322
Q ss_pred ---eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 230 ---VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 230 ---lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
+|.-.+... +. ....+.+|+++.++|||||+++.++...
T Consensus 114 ~~~fD~v~~~~~-------------l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 155 (227)
T 3e8s_A 114 GKDYDLICANFA-------------LL-HQDIIELLSAMRTLLVPGGALVIQTLHP 155 (227)
T ss_dssp CCCEEEEEEESC-------------CC-SSCCHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCCccEEEECch-------------hh-hhhHHHHHHHHHHHhCCCeEEEEEecCc
Confidence 222221111 01 1223378999999999999999988644
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=2.4e-06 Score=82.11 Aligned_cols=121 Identities=12% Similarity=-0.031 Sum_probs=77.6
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee--------eeccc
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV--------VYSTC 234 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~--------lDaPC 234 (355)
..+.+|||+|||+|+.+..++...+..+|+++|+++..+ +++++..+....+.++++++..|+.. .|.-.
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 356799999999999999988764457999999999999 77887621000123568888888643 22222
Q ss_pred CCCCCccCCccccchHHHHhhhhH-HHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 235 SLSPIQNDGVVHMSLKRIWEETGC-EIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 235 SgsG~t~~~~l~~~~~~l~~l~~l-Q~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
+... + .+.+. . ... .++++.+.+.|+|||.++..+.+.. -+...+..+++.
T Consensus 195 ~d~~---~---p~~~~--~--~l~~~~~l~~~~~~LkpgG~lv~~~~~~~--~~~~~~~~~~~~ 246 (321)
T 2pt6_A 195 VDSS---D---PIGPA--E--TLFNQNFYEKIYNALKPNGYCVAQCESLW--IHVGTIKNMIGY 246 (321)
T ss_dssp EECC---C---SSSGG--G--GGSSHHHHHHHHHHEEEEEEEEEEECCTT--TCHHHHHHHHHH
T ss_pred ECCc---C---CCCcc--h--hhhHHHHHHHHHHhcCCCcEEEEEcCCcc--cCHHHHHHHHHH
Confidence 1100 0 01111 0 011 2789999999999999999865532 234445555444
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.2e-06 Score=77.67 Aligned_cols=100 Identities=10% Similarity=-0.074 Sum_probs=64.2
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccC
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQND 242 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~ 242 (355)
.++.+|||+|||+|..+..++.. + .+|+++|+++.++ ++++.. .+...|....+.|... + .
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~~-----------~~~~~d~~~~~~~~~~-~---~ 93 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKLD-----------HVVLGDIETMDMPYEE-E---Q 93 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTSS-----------EEEESCTTTCCCCSCT-T---C
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhCC-----------cEEEcchhhcCCCCCC-C---c
Confidence 68899999999999999999887 3 8999999999988 544433 2444454321111100 0 0
Q ss_pred CccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 243 GVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 243 ~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
-++.+...-+........+|+++.++|+|||.++.++-.
T Consensus 94 fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 132 (230)
T 3cc8_A 94 FDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPN 132 (230)
T ss_dssp EEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred cCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 001111111122222337899999999999999998744
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=98.26 E-value=7.9e-07 Score=82.95 Aligned_cols=44 Identities=11% Similarity=-0.034 Sum_probs=33.2
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
.+|.+|||+|||+|. +..++.......|+++|+|+.++ ++++++
T Consensus 70 ~~~~~vLDiGcG~G~-~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~ 115 (289)
T 2g72_A 70 VSGRTLIDIGSGPTV-YQLLSACSHFEDITMTDFLEVNRQELGRWLQ 115 (289)
T ss_dssp SCCSEEEEETCTTCC-GGGTTGGGGCSEEEEECSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCcCh-HHHHhhccCCCeEEEeCCCHHHHHHHHHHHh
Confidence 378899999999999 44333332346899999999999 666554
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.26 E-value=5.8e-06 Score=80.17 Aligned_cols=109 Identities=6% Similarity=-0.141 Sum_probs=77.2
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeee--cccCCCCC
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVY--STCSLSPI 239 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lD--aPCSgsG~ 239 (355)
..+.+|||+|||+|..+..+++..+..+++++|+ +..+ +++++. . .+. .++++..+|....+ .|- +.-+
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~--~--~~~~~~v~~~~~d~~~~~~~~p~-~~D~ 251 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTA--G--LSGSERIHGHGANLLDRDVPFPT-GFDA 251 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHT--T--CTTGGGEEEEECCCCSSSCCCCC-CCSE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHH--h--cCcccceEEEEccccccCCCCCC-CcCE
Confidence 4567999999999999999999876689999999 8888 777776 3 233 57899999986433 231 1111
Q ss_pred ccCCc-cc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCC
Q psy7769 240 QNDGV-VH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPI 285 (355)
Q Consensus 240 t~~~~-l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ 285 (355)
..-.. ++ |..... .++|+++.+.|||||+|+.....+...
T Consensus 252 v~~~~vlh~~~~~~~------~~~l~~~~~~L~pgG~l~i~e~~~~~~ 293 (363)
T 3dp7_A 252 VWMSQFLDCFSEEEV------ISILTRVAQSIGKDSKVYIMETLWDRQ 293 (363)
T ss_dssp EEEESCSTTSCHHHH------HHHHHHHHHHCCTTCEEEEEECCTTSC
T ss_pred EEEechhhhCCHHHH------HHHHHHHHHhcCCCcEEEEEeeccCCc
Confidence 11111 22 443322 278999999999999999987766543
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.6e-06 Score=81.94 Aligned_cols=113 Identities=15% Similarity=0.081 Sum_probs=70.8
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcccccc---ccCcceEEEEEecceeeec--ccC-C
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDT---VLDIHALKLVKVGGSVVYS--TCS-L 236 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~---~~g~~~v~~~~~Da~~lDa--PCS-g 236 (355)
.++.+|||+|||+|..+..++.. ....|+++|+++.++ ++++...... ..+..++.++..|...++. +.. .
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 47889999999999999998874 347899999999999 6666541000 0022468888888754320 010 0
Q ss_pred CCCccCCc-----cccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 237 SPIQNDGV-----VHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 237 sG~t~~~~-----l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
.+ +.+-- ++|.. ........+|.++.++|||||.++.+|...
T Consensus 112 ~~-~fD~V~~~~~l~~~~---~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 112 QM-CFDICSCQFVCHYSF---ESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp TC-CEEEEEEETCGGGGG---GSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred CC-CEEEEEEecchhhcc---CCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 00 00000 22321 111222388999999999999999988754
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.26 E-value=8.5e-07 Score=81.55 Aligned_cols=96 Identities=15% Similarity=0.027 Sum_probs=64.5
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccC
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQND 242 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~ 242 (355)
.++.+|||+|||+|..+..++.....+.|+++|+++.++ ++++.. ++.+...|+..+..+- + +
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---------~~~~~~~d~~~~~~~~---~-~-- 148 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP---------QVTFCVASSHRLPFSD---T-S-- 148 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT---------TSEEEECCTTSCSBCT---T-C--
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCC---------CcEEEEcchhhCCCCC---C-c--
Confidence 678999999999999999999876557999999999999 554443 2355666654321110 0 0
Q ss_pred CccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 243 GVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 243 ~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
-++.+.... ...++++.++|||||+++.++...
T Consensus 149 fD~v~~~~~-------~~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 149 MDAIIRIYA-------PCKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp EEEEEEESC-------CCCHHHHHHHEEEEEEEEEEEECT
T ss_pred eeEEEEeCC-------hhhHHHHHHhcCCCcEEEEEEcCH
Confidence 000000000 034788999999999999987654
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=3.9e-06 Score=79.04 Aligned_cols=120 Identities=10% Similarity=-0.042 Sum_probs=76.9
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee--------eeccc
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV--------VYSTC 234 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~--------lDaPC 234 (355)
.++.+|||+|||.|+.+..++......+|+++|+++..+ +++++.........+++.++..|+.. .|+-.
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 456799999999999999988765457999999999999 77777621000113578888888643 22222
Q ss_pred CCCCCccCCccccchHHHHhhhhH--HHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 235 SLSPIQNDGVVHMSLKRIWEETGC--EIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 235 SgsG~t~~~~l~~~~~~l~~l~~l--Q~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
+..- ..+.+. ..+ ++.++.+.+.|+|||.++..+++... +...+..+++.
T Consensus 157 ~d~~------~~~~~~-----~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~--~~~~~~~~~~~ 208 (283)
T 2i7c_A 157 VDSS------DPIGPA-----ETLFNQNFYEKIYNALKPNGYCVAQCESLWI--HVGTIKNMIGY 208 (283)
T ss_dssp EECC------CTTTGG-----GGGSSHHHHHHHHHHEEEEEEEEEECCCTTT--CHHHHHHHHHH
T ss_pred EcCC------CCCCcc-----hhhhHHHHHHHHHHhcCCCcEEEEECCCccc--CHHHHHHHHHH
Confidence 1000 001111 111 27899999999999999998776432 33344444443
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=5.6e-07 Score=81.91 Aligned_cols=111 Identities=12% Similarity=0.082 Sum_probs=70.7
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccC------------------------
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLD------------------------ 216 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g------------------------ 216 (355)
...+|.+|||+|||+|..+..++.... ..|+++|+++.++ +++++. .. .+
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLK--KE-PGAFDWSPVVTYVCDLEGNRMKGPEK 128 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHT--TC-TTCCCCHHHHHHHHHHTTTCSCHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHh--cC-CccccchhhhhhhhcccccccchHHH
Confidence 346788999999999999888876542 5899999999999 766665 21 00
Q ss_pred ----cceE-EEEEecceeeec-ccCCCCCccCCccccchHHHH----hhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 217 ----IHAL-KLVKVGGSVVYS-TCSLSPIQNDGVVHMSLKRIW----EETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 217 ----~~~v-~~~~~Da~~lDa-PCSgsG~t~~~~l~~~~~~l~----~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
..++ .+...|....++ +-...+ .-++.+...-+. .......+|+++.++|||||+++.++.
T Consensus 129 ~~~l~~~v~~~~~~d~~~~~~~~~~~~~---~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 199 (265)
T 2i62_A 129 EEKLRRAIKQVLKCDVTQSQPLGGVSLP---PADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDA 199 (265)
T ss_dssp HHHHHHHEEEEEECCTTSSSTTTTCCCC---CEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred HHHhhhhheeEEEeeeccCCCCCccccC---CccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence 0126 778888755332 110001 111111111112 122233889999999999999999874
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=1.7e-06 Score=82.54 Aligned_cols=102 Identities=11% Similarity=-0.074 Sum_probs=69.8
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-------------
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------------- 229 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------------- 229 (355)
..+.+|||+|||.|+.+..++......+|+++|+++..+ +++++.........++++++..|+..
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 456799999999999999998765457999999999999 77776521000123568888888743
Q ss_pred eecccCCCCCccCCccccchHHHHhhhhH-H-HHHHHHHhhccCCcEEEEEeCCC
Q psy7769 230 VYSTCSLSPIQNDGVVHMSLKRIWEETGC-E-IEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 230 lDaPCSgsG~t~~~~l~~~~~~l~~l~~l-Q-~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
+|++.. +.+ ...+ . ++++.+.++|+|||.++..+.+.
T Consensus 174 ~d~~~~-----------~~~-----~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~ 212 (304)
T 2o07_A 174 TDSSDP-----------MGP-----AESLFKESYYQLMKTALKEDGVLCCQGECQ 212 (304)
T ss_dssp EECC---------------------------CHHHHHHHHHEEEEEEEEEEEECT
T ss_pred ECCCCC-----------CCc-----chhhhHHHHHHHHHhccCCCeEEEEecCCc
Confidence 222210 001 0112 2 78999999999999999987553
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.2e-06 Score=83.52 Aligned_cols=108 Identities=14% Similarity=0.002 Sum_probs=64.2
Q ss_pred hCCCCCCeEeeecc------cCcchHHHHHHhcC-CCcEEEEcCCchhhHHhhccccccccCcceEEE-EEecc------
Q psy7769 162 LNIRPYDTVLDMCA------APGGKTLVALQTLY-PDYYCMDGASLLPVLALNIRPYDTVLDIHALKL-VKVGG------ 227 (355)
Q Consensus 162 L~~~pG~~VLD~CA------gPGgKT~~la~~~~-~g~V~AvD~s~~Rll~~~l~r~~~~~g~~~v~~-~~~Da------ 227 (355)
+.+++|++|||+|| |||+ ..+++..+ .++|+|+|+++. + . ++++ +++|.
T Consensus 59 l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v-----~---------~v~~~i~gD~~~~~~~ 121 (290)
T 2xyq_A 59 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V-----S---------DADSTLIGDCATVHTA 121 (290)
T ss_dssp CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B-----C---------SSSEEEESCGGGCCCS
T ss_pred cCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C-----C---------CCEEEEECccccCCcc
Confidence 46789999999999 7788 55566665 489999999986 2 1 1223 33333
Q ss_pred -----eeeecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 228 -----SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 228 -----~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
...|.++..+|. |..+.... ..+. ++|+.+.++|||||+++..+-.. ... ..+...+++
T Consensus 122 ~~fD~Vvsn~~~~~~g~-------~~~d~~~~-~~l~~~~l~~a~r~LkpGG~~v~~~~~~--~~~-~~l~~~l~~ 186 (290)
T 2xyq_A 122 NKWDLIISDMYDPRTKH-------VTKENDSK-EGFFTYLCGFIKQKLALGGSIAVKITEH--SWN-ADLYKLMGH 186 (290)
T ss_dssp SCEEEEEECCCCCC----------CCSCCCCC-CTHHHHHHHHHHHHEEEEEEEEEEECSS--SCC-HHHHHHHTT
T ss_pred CcccEEEEcCCcccccc-------ccccccch-HHHHHHHHHHHHHhcCCCcEEEEEEecc--CCH-HHHHHHHHH
Confidence 223333322221 11110000 1122 78999999999999999875433 233 345555654
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.23 E-value=9.2e-07 Score=78.11 Aligned_cols=97 Identities=14% Similarity=0.031 Sum_probs=61.9
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCC-cEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccC
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPD-YYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQND 242 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g-~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~ 242 (355)
++.+|||+|||+|..+..+ .. +|+++|+++.++ +++++. ++.+...|...+..+- + .
T Consensus 36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~---------~~~~~~~d~~~~~~~~---~---~ 95 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAP---------EATWVRAWGEALPFPG---E---S 95 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCT---------TSEEECCCTTSCCSCS---S---C
T ss_pred CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCC---------CcEEEEcccccCCCCC---C---c
Confidence 8899999999999988766 34 899999999998 555543 2345555553321110 0 0
Q ss_pred CccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 243 GVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 243 ~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
-++.+...-+.......++|+++.++|||||.++.++..-
T Consensus 96 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 96 FDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEA 135 (211)
T ss_dssp EEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred EEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 0000000111112233378999999999999999987643
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=3e-06 Score=81.51 Aligned_cols=106 Identities=11% Similarity=-0.001 Sum_probs=75.5
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEeccee-----e
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSV-----V 230 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~-----l 230 (355)
+..++..++.+|||+|||+|..+..++......+++++|+ +..+ +++++. . .+. .++.+...|... .
T Consensus 176 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~--~--~~~~~~v~~~~~d~~~~~~~~~ 250 (360)
T 1tw3_A 176 AAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLK--D--EGLSDRVDVVEGDFFEPLPRKA 250 (360)
T ss_dssp HHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHH--H--TTCTTTEEEEECCTTSCCSSCE
T ss_pred HHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHH--h--cCCCCceEEEeCCCCCCCCCCc
Confidence 3445667889999999999999999998876678999999 8888 777776 3 233 368899988753 2
Q ss_pred ecccCCCCCccCCccc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 231 YSTCSLSPIQNDGVVH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 231 DaPCSgsG~t~~~~l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
|.-.+. ..++ |..... .++|+++.+.|||||+++.+...
T Consensus 251 D~v~~~------~vl~~~~~~~~------~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 251 DAIILS------FVLLNWPDHDA------VRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp EEEEEE------SCGGGSCHHHH------HHHHHHHHHTEEEEEEEEEEECC
T ss_pred cEEEEc------ccccCCCHHHH------HHHHHHHHHhcCCCcEEEEEEEe
Confidence 221100 0011 322211 17899999999999999988766
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.22 E-value=6.4e-06 Score=77.27 Aligned_cols=116 Identities=14% Similarity=-0.040 Sum_probs=75.9
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-------------e
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV-------------V 230 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~-------------l 230 (355)
.+.+|||+|||.|+.+..++...+..+|+++|+++..+ +++++..+......++++++.+|+.. +
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 45799999999999999888764447999999999999 77777411000223578888888753 3
Q ss_pred ecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 231 YSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 231 DaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
|++.. .+ .+..+ -.+++++.+.+.|+|||.++..+.+. ..+...+..+++.
T Consensus 155 d~~~~-~~---------~~~~l----~~~~~~~~~~~~L~pgG~lv~~~~~~--~~~~~~~~~~~~~ 205 (275)
T 1iy9_A 155 DSTEP-VG---------PAVNL----FTKGFYAGIAKALKEDGIFVAQTDNP--WFTPELITNVQRD 205 (275)
T ss_dssp SCSSC-CS---------CCCCC----STTHHHHHHHHHEEEEEEEEEECCCT--TTCHHHHHHHHHH
T ss_pred CCCCC-CC---------cchhh----hHHHHHHHHHHhcCCCcEEEEEcCCc--cccHHHHHHHHHH
Confidence 33320 01 00000 00177899999999999999987653 2344455544443
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=98.22 E-value=3e-06 Score=80.39 Aligned_cols=113 Identities=14% Similarity=-0.012 Sum_probs=76.9
Q ss_pred HhhCC--CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeeccc
Q psy7769 160 LALNI--RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTC 234 (355)
Q Consensus 160 ~~L~~--~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPC 234 (355)
..++. .++.+|||+|||+|..+..+++..+..+++++|++ ..+ +++++. . .+. .++.+...|....+.|-
T Consensus 157 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~--~--~~~~~~v~~~~~d~~~~~~~~ 231 (335)
T 2r3s_A 157 QLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENAR--I--QGVASRYHTIAGSAFEVDYGN 231 (335)
T ss_dssp HHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHH--H--HTCGGGEEEEESCTTTSCCCS
T ss_pred HhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHH--h--cCCCcceEEEecccccCCCCC
Confidence 34455 78899999999999999999988766799999999 888 777766 2 233 35889988875422221
Q ss_pred CCCCCccCCc-cc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCC
Q psy7769 235 SLSPIQNDGV-VH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSP 284 (355)
Q Consensus 235 SgsG~t~~~~-l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~ 284 (355)
+.-+..-.+ ++ |.... ..++|+++.+.|+|||+++........
T Consensus 232 -~~D~v~~~~~l~~~~~~~------~~~~l~~~~~~L~pgG~l~i~e~~~~~ 276 (335)
T 2r3s_A 232 -DYDLVLLPNFLHHFDVAT------CEQLLRKIKTALAVEGKVIVFDFIPNS 276 (335)
T ss_dssp -CEEEEEEESCGGGSCHHH------HHHHHHHHHHHEEEEEEEEEEECCCCT
T ss_pred -CCcEEEEcchhccCCHHH------HHHHHHHHHHhCCCCcEEEEEeecCCC
Confidence 000000001 11 32221 227899999999999999988776644
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.7e-06 Score=91.13 Aligned_cols=118 Identities=12% Similarity=-0.071 Sum_probs=77.9
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhcccccc--ccCcceEEEEEecceeeec
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDT--VLDIHALKLVKVGGSVVYS 232 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~--~~g~~~v~~~~~Da~~lDa 232 (355)
+...+...+|.+|||+|||+|..+..+++... ..+|+++|+++.++ +++++..... ..+..++.+..+|+..++.
T Consensus 713 LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~ 792 (950)
T 3htx_A 713 ALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDS 792 (950)
T ss_dssp HHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCT
T ss_pred HHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCc
Confidence 34555566899999999999999999988763 36999999999999 6664431000 0245689999999866443
Q ss_pred ccCCCCCccCCccccchHHHHhhhhHH--HHHHHHHhhccCCcEEEEEeCCC
Q psy7769 233 TCSLSPIQNDGVVHMSLKRIWEETGCE--IEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 233 PCSgsG~t~~~~l~~~~~~l~~l~~lQ--~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
+- + . -++.+...-+..+..-+ .+++.+.++|||| .++.+|+..
T Consensus 793 ~d---~-s--FDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 793 RL---H-D--VDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp TS---C-S--CCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred cc---C-C--eeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 31 1 1 11111111122222222 6899999999998 888888753
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.21 E-value=5.7e-06 Score=78.67 Aligned_cols=109 Identities=17% Similarity=0.019 Sum_probs=75.6
Q ss_pred hCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccCCCC
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLSP 238 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG 238 (355)
++..+ .+|||+|||+|..+..+++..+..+++++|+ +..+ +++++. . .+. .++.+..+|... +.| .+.-
T Consensus 164 ~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~--~--~~~~~~v~~~~~d~~~-~~~-~~~D 235 (334)
T 2ip2_A 164 LDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLS--S--LLAGERVSLVGGDMLQ-EVP-SNGD 235 (334)
T ss_dssp SCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTH--H--HHHTTSEEEEESCTTT-CCC-SSCS
T ss_pred CCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHh--h--cCCCCcEEEecCCCCC-CCC-CCCC
Confidence 34555 8999999999999999998876679999999 8888 777765 2 232 468899988754 223 1111
Q ss_pred CccCCc-cc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCC
Q psy7769 239 IQNDGV-VH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSP 284 (355)
Q Consensus 239 ~t~~~~-l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~ 284 (355)
+..-.+ ++ |..... .++|+++.+.|||||+++.....+..
T Consensus 236 ~v~~~~vl~~~~~~~~------~~~l~~~~~~L~pgG~l~i~e~~~~~ 277 (334)
T 2ip2_A 236 IYLLSRIIGDLDEAAS------LRLLGNCREAMAGDGRVVVIERTISA 277 (334)
T ss_dssp EEEEESCGGGCCHHHH------HHHHHHHHHHSCTTCEEEEEECCBCS
T ss_pred EEEEchhccCCCHHHH------HHHHHHHHHhcCCCCEEEEEEeccCC
Confidence 111111 22 443322 27899999999999999998776543
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.21 E-value=3e-06 Score=77.80 Aligned_cols=99 Identities=9% Similarity=-0.031 Sum_probs=65.0
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccCC
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDG 243 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~~ 243 (355)
++.+|||+|||+|..+..+++.. ..|+++|+++.++ ++++.. . + +...|+..++.+- + + -
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~--~------~--~~~~d~~~~~~~~---~-~--f 115 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERG--FEVVLVDPSKEMLEVAREKGV--K------N--VVEAKAEDLPFPS---G-A--F 115 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTT--CEEEEEESCHHHHHHHHHHTC--S------C--EEECCTTSCCSCT---T-C--E
T ss_pred CCCeEEEeCCCcCHHHHHHHHcC--CeEEEEeCCHHHHHHHHhhcC--C------C--EEECcHHHCCCCC---C-C--E
Confidence 78899999999999999988763 6899999999999 555443 1 1 4555654322110 0 0 0
Q ss_pred ccccchHHHHhh-hhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 244 VVHMSLKRIWEE-TGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 244 ~l~~~~~~l~~l-~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
++.+....+... .....+|+++.++|||||+++.++.+.
T Consensus 116 D~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 116 EAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp EEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred EEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 000000011111 223388999999999999999988764
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.21 E-value=7.3e-07 Score=87.87 Aligned_cols=115 Identities=17% Similarity=0.068 Sum_probs=74.4
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccCCCCCcc
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLSPIQN 241 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG~t~ 241 (355)
.+|.+|||++||+|..+..+|+.+ ..+|+|+|.++ ++ ++++++ . .+. .+|+++.+|...++.|..-.-+..
T Consensus 82 ~~~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~-~~~~a~~~~~--~--n~~~~~i~~i~~~~~~~~lpe~~Dvivs 155 (376)
T 4hc4_A 82 LRGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASA-IWQQAREVVR--F--NGLEDRVHVLPGPVETVELPEQVDAIVS 155 (376)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECST-THHHHHHHHH--H--TTCTTTEEEEESCTTTCCCSSCEEEEEC
T ss_pred cCCCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChH-HHHHHHHHHH--H--cCCCceEEEEeeeeeeecCCccccEEEe
Confidence 478999999999999888777764 35899999996 55 777766 3 233 468999998876555531000000
Q ss_pred CCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC--CCCCHH
Q psy7769 242 DGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS--PIQNDG 289 (355)
Q Consensus 242 ~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~--~~ENE~ 289 (355)
.|--.-+..-..+..++....++|||||.++-+.|+++ +.|.+.
T Consensus 156 ----E~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~~atly~apie~~~ 201 (376)
T 4hc4_A 156 ----EWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASAELFIVPISDQM 201 (376)
T ss_dssp ----CCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHH
T ss_pred ----ecccccccccchhhhHHHHHHhhCCCCceECCccceEEEEEeccch
Confidence 01100011111233677778899999999998877754 556644
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.20 E-value=3.5e-06 Score=80.79 Aligned_cols=112 Identities=16% Similarity=0.081 Sum_probs=76.7
Q ss_pred hCCCC-CCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeee--cccC
Q psy7769 162 LNIRP-YDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVY--STCS 235 (355)
Q Consensus 162 L~~~p-G~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lD--aPCS 235 (355)
++..+ +.+|||+|||+|..+..+++..+..+++++|+ +..+ +++++. . .+. .++++..+|....+ .|-
T Consensus 174 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~--~--~~~~~~v~~~~~d~~~~~~~~~~- 247 (352)
T 3mcz_A 174 LGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIH--A--HDLGGRVEFFEKNLLDARNFEGG- 247 (352)
T ss_dssp CGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHH--H--TTCGGGEEEEECCTTCGGGGTTC-
T ss_pred CCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHH--h--cCCCCceEEEeCCcccCcccCCC-
Confidence 34556 88999999999999999998877789999999 7777 666666 2 233 46899999875433 221
Q ss_pred CCCCccCCc-cc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCC
Q psy7769 236 LSPIQNDGV-VH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPI 285 (355)
Q Consensus 236 gsG~t~~~~-l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ 285 (355)
+.-+..-.+ ++ |..... ..+|+++.+.|||||+|+.....+...
T Consensus 248 ~~D~v~~~~vlh~~~~~~~------~~~l~~~~~~L~pgG~l~i~e~~~~~~ 293 (352)
T 3mcz_A 248 AADVVMLNDCLHYFDAREA------REVIGHAAGLVKPGGALLILTMTMNDD 293 (352)
T ss_dssp CEEEEEEESCGGGSCHHHH------HHHHHHHHHTEEEEEEEEEEEECCCTT
T ss_pred CccEEEEecccccCCHHHH------HHHHHHHHHHcCCCCEEEEEEeccCCC
Confidence 000000011 22 333221 278999999999999999987766544
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=9.1e-06 Score=78.96 Aligned_cols=114 Identities=6% Similarity=-0.092 Sum_probs=78.7
Q ss_pred hhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccCCC
Q psy7769 161 ALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLS 237 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgs 237 (355)
.++..++.+|||+|||+|..+..+++..+..+++++|+ +..+ +++++. . .+. .++++...|.. -+.|- +.
T Consensus 197 ~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~--~--~~l~~~v~~~~~d~~-~~~p~-~~ 269 (369)
T 3gwz_A 197 AYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLT--G--RGLADRCEILPGDFF-ETIPD-GA 269 (369)
T ss_dssp HSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHH--H--TTCTTTEEEEECCTT-TCCCS-SC
T ss_pred hCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhh--h--cCcCCceEEeccCCC-CCCCC-Cc
Confidence 34567789999999999999999998876679999999 8888 777766 2 233 56899999875 12221 11
Q ss_pred CCccCCc-cc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCC
Q psy7769 238 PIQNDGV-VH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQN 287 (355)
Q Consensus 238 G~t~~~~-l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~EN 287 (355)
-+..-++ ++ |..... .++|+++.+.|||||+|+.....+.....
T Consensus 270 D~v~~~~vlh~~~d~~~------~~~L~~~~~~L~pgG~l~i~e~~~~~~~~ 315 (369)
T 3gwz_A 270 DVYLIKHVLHDWDDDDV------VRILRRIATAMKPDSRLLVIDNLIDERPA 315 (369)
T ss_dssp SEEEEESCGGGSCHHHH------HHHHHHHHTTCCTTCEEEEEEEBCCSSCC
T ss_pred eEEEhhhhhccCCHHHH------HHHHHHHHHHcCCCCEEEEEEeccCCCCC
Confidence 1011111 22 333221 17899999999999999998877654433
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=4.3e-06 Score=79.66 Aligned_cols=108 Identities=11% Similarity=-0.053 Sum_probs=74.9
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccCCCCCc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLSPIQ 240 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG~t 240 (355)
..++.+|||+|||+|..+..+++..+..+++++|+ +..+ +++++. . .+. .++++..+|.. -+.|- +.-+.
T Consensus 167 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~--~--~~~~~~v~~~~~d~~-~~~p~-~~D~v 239 (332)
T 3i53_A 167 WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFL--D--TGLSGRAQVVVGSFF-DPLPA-GAGGY 239 (332)
T ss_dssp CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHH--H--TTCTTTEEEEECCTT-SCCCC-SCSEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhh--h--cCcCcCeEEecCCCC-CCCCC-CCcEE
Confidence 35578999999999999999998877789999999 8888 777766 2 233 56899999875 12221 11101
Q ss_pred cCCc-cc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCC
Q psy7769 241 NDGV-VH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSP 284 (355)
Q Consensus 241 ~~~~-l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~ 284 (355)
.-++ ++ |.... .+++|+++.+.|||||+|+........
T Consensus 240 ~~~~vlh~~~~~~------~~~~l~~~~~~L~pgG~l~i~e~~~~~ 279 (332)
T 3i53_A 240 VLSAVLHDWDDLS------AVAILRRCAEAAGSGGVVLVIEAVAGD 279 (332)
T ss_dssp EEESCGGGSCHHH------HHHHHHHHHHHHTTTCEEEEEECCCC-
T ss_pred EEehhhccCCHHH------HHHHHHHHHHhcCCCCEEEEEeecCCC
Confidence 1111 22 43321 127899999999999999998766543
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.1e-05 Score=75.60 Aligned_cols=44 Identities=23% Similarity=0.147 Sum_probs=37.8
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcC-Cchhh--HHhhc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGA-SLLPV--LALNI 208 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~-s~~Rl--l~~~l 208 (355)
..+|.+|||+|||+|..+..++... .++|+++|+ ++.++ +++|+
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~ 123 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNI 123 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHH
T ss_pred hcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHH
Confidence 4578899999999999999888763 358999999 89999 78887
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.13 E-value=2.8e-06 Score=87.37 Aligned_cols=141 Identities=12% Similarity=-0.005 Sum_probs=90.4
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC------------------CCcEEEEcCCchhh--HHhh
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY------------------PDYYCMDGASLLPV--LALN 207 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~------------------~g~V~AvD~s~~Rl--l~~~ 207 (355)
||--..-+.+.+.++.+.+|.+|||.|||+|+..+.++..+. ...++++|+++..+ ++.|
T Consensus 151 fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~n 230 (541)
T 2ar0_A 151 YFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMN 230 (541)
T ss_dssp CCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHH
T ss_pred eeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHH
Confidence 555555566677888999999999999999999998886531 13799999999998 5556
Q ss_pred ccccccccCcce-----EEEEEecc-------------eeeecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhh
Q psy7769 208 IRPYDTVLDIHA-----LKLVKVGG-------------SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKL 268 (355)
Q Consensus 208 l~r~~~~~g~~~-----v~~~~~Da-------------~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~ 268 (355)
+. . .+..+ +.+.++|. ...+||.++......+. .+.. .....+ ..+.+++++
T Consensus 231 l~--l--~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~-~~~~----~~~~~~~~Fl~~~l~~ 301 (541)
T 2ar0_A 231 CL--L--HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITR-TFVH----PTSNKQLCFMQHIIET 301 (541)
T ss_dssp HH--T--TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCS-CCSS----CCSCHHHHHHHHHHHH
T ss_pred HH--H--hCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHh-hcCC----CCCchHHHHHHHHHHH
Confidence 54 1 23322 44555543 33778886543110000 0100 012233 679999999
Q ss_pred ccCCcEEEEEeCC--CCCCCCHHHHHHHHHh
Q psy7769 269 VKVGGSVVYSTCS--LSPIQNDGVVHMSLKR 297 (355)
Q Consensus 269 LkpGG~lVYsTCS--l~~~ENE~vV~~~L~~ 297 (355)
|||||++++.+.. ++....+..+.+.|-+
T Consensus 302 Lk~gGr~a~V~p~~~L~~~~~~~~iR~~L~~ 332 (541)
T 2ar0_A 302 LHPGGRAAVVVPDNVLFEGGKGTDIRRDLMD 332 (541)
T ss_dssp EEEEEEEEEEEEHHHHHCCTHHHHHHHHHHH
T ss_pred hCCCCEEEEEecCcceecCcHHHHHHHHHhh
Confidence 9999999988653 3333335566555543
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.6e-06 Score=78.12 Aligned_cols=100 Identities=14% Similarity=0.061 Sum_probs=68.3
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcc-eEEEEEeccee------eecccC
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIH-ALKLVKVGGSV------VYSTCS 235 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~-~v~~~~~Da~~------lDaPCS 235 (355)
.+.++|||++||.|..++.++...+..+|+|+|+|+.++ +++++. . .|.. ++.+ .|... .|+.++
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~--~--~g~~~~v~~--~d~~~~~~~~~~DvVLa 121 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIG--K--LKTTIKYRF--LNKESDVYKGTYDVVFL 121 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHH--H--SCCSSEEEE--ECCHHHHTTSEEEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH--h--cCCCccEEE--ecccccCCCCCcChhhH
Confidence 457799999999999999888776667999999999999 888887 3 3554 6666 44322 233331
Q ss_pred CCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE-eCCCC
Q psy7769 236 LSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS-TCSLS 283 (355)
Q Consensus 236 gsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs-TCSl~ 283 (355)
++ -+.-+.+.+..+...++.|+|||.+|-- |-|+.
T Consensus 122 -----------~k--~LHlL~~~~~al~~v~~~L~pggvfISfptksl~ 157 (200)
T 3fzg_A 122 -----------LK--MLPVLKQQDVNILDFLQLFHTQNFVISFPIKSLS 157 (200)
T ss_dssp -----------ET--CHHHHHHTTCCHHHHHHTCEEEEEEEEEECCCCC
T ss_pred -----------hh--HHHhhhhhHHHHHHHHHHhCCCCEEEEeChHHhc
Confidence 11 1222211224455899999999888743 56764
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.13 E-value=8.9e-06 Score=78.87 Aligned_cols=51 Identities=25% Similarity=0.258 Sum_probs=43.6
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh-HHhhc
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV-LALNI 208 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl-l~~~l 208 (355)
++..|.++||+.++|+|+|.||.|..|++.+ +.|+|+|+|.++..+ ..+++
T Consensus 49 vl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL 101 (347)
T 3tka_A 49 AVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTI 101 (347)
T ss_dssp HHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTC
T ss_pred HHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhh
Confidence 4567789999999999999999999999876 459999999999999 43343
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.7e-06 Score=86.29 Aligned_cols=116 Identities=15% Similarity=0.034 Sum_probs=74.8
Q ss_pred hhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccCCC
Q psy7769 161 ALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLS 237 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgs 237 (355)
.+...++.+|||+|||+|..+..+++. +..+|+|+|+++ ++ ++++++ . .+. .+++++.+|...++.|-
T Consensus 153 ~l~~~~~~~VLDiGcGtG~la~~la~~-~~~~V~gvD~s~-~l~~A~~~~~--~--~gl~~~v~~~~~d~~~~~~~~--- 223 (480)
T 3b3j_A 153 NHTDFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVK--S--NNLTDRIVVIPGKVEEVSLPE--- 223 (480)
T ss_dssp TGGGTTTCEEEEESCSTTHHHHHHHHT-TCSEEEEEECHH-HHHHHHHHHH--H--TTCTTTEEEEESCTTTCCCSS---
T ss_pred hhhhcCCCEEEEecCcccHHHHHHHHc-CCCEEEEEEcHH-HHHHHHHHHH--H--cCCCCcEEEEECchhhCccCC---
Confidence 344567899999999999999988874 346899999998 77 777776 3 344 57899999876533221
Q ss_pred CCccCCccccchHHHHhh--hhHHHHHHHHHhhccCCcEEEEEeCCCC--CCCCHH
Q psy7769 238 PIQNDGVVHMSLKRIWEE--TGCEIEIKHALKLVKVGGSVVYSTCSLS--PIQNDG 289 (355)
Q Consensus 238 G~t~~~~l~~~~~~l~~l--~~lQ~lL~~A~~~LkpGG~lVYsTCSl~--~~ENE~ 289 (355)
. -++.++..-.... ....+.+..+.++|||||.++.+.+++. +.+.+.
T Consensus 224 --~--fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~~~~~~~~pi~~~~ 275 (480)
T 3b3j_A 224 --Q--VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGDVHLAPFTDEQ 275 (480)
T ss_dssp --C--EEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESCEEEEEEEEECCHH
T ss_pred --C--eEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEEeceeeeeccCchH
Confidence 0 0111110000111 1112567788999999999997665543 344443
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.10 E-value=3.3e-06 Score=78.71 Aligned_cols=79 Identities=14% Similarity=0.053 Sum_probs=63.7
Q ss_pred EEEechh-cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEE
Q psy7769 148 YYCMDGA-SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVK 224 (355)
Q Consensus 148 ~~~QD~a-S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~ 224 (355)
-++.|+. ....+..+++.+|++|||+|||+|..|..++... ++|+|+|+++.++ +++++. . ..++++++
T Consensus 10 nFL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~--~----~~~v~~i~ 81 (255)
T 3tqs_A 10 HFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYN--Q----QKNITIYQ 81 (255)
T ss_dssp CEECCHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHT--T----CTTEEEEE
T ss_pred ccccCHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHh--h----CCCcEEEE
Confidence 3455543 4456677889999999999999999999999875 7999999999999 777776 2 35789999
Q ss_pred ecceeeeccc
Q psy7769 225 VGGSVVYSTC 234 (355)
Q Consensus 225 ~Da~~lDaPC 234 (355)
+|+..+|.+-
T Consensus 82 ~D~~~~~~~~ 91 (255)
T 3tqs_A 82 NDALQFDFSS 91 (255)
T ss_dssp SCTTTCCGGG
T ss_pred cchHhCCHHH
Confidence 9998776553
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.09 E-value=5.4e-06 Score=80.24 Aligned_cols=122 Identities=14% Similarity=-0.026 Sum_probs=76.9
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee---------eec
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV---------VYS 232 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~---------lDa 232 (355)
...+.+|||+|||+|+.+..++...+..+|+++|+++.++ +++++.++.......+++++.+|+.. .|.
T Consensus 118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl 197 (334)
T 1xj5_A 118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 197 (334)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence 3456799999999999999998765457999999999999 77777521000122568888888643 222
Q ss_pred ccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHH
Q psy7769 233 TCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLK 296 (355)
Q Consensus 233 PCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~ 296 (355)
-.+.. ..+.......-..++++.+.++|+|||.++..+.+... ....++..++
T Consensus 198 Ii~d~---------~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~--~~~~~~~~~~ 250 (334)
T 1xj5_A 198 VIVDS---------SDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWL--HMDIIEDIVS 250 (334)
T ss_dssp EEECC---------CCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTT--CHHHHHHHHH
T ss_pred EEECC---------CCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCccc--cHHHHHHHHH
Confidence 22100 00000000000128899999999999999998655432 3333444443
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.09 E-value=7.2e-06 Score=78.66 Aligned_cols=108 Identities=12% Similarity=-0.070 Sum_probs=70.0
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee--------eecccC
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV--------VYSTCS 235 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~--------lDaPCS 235 (355)
.+.+|||+|||.|+.+..++...+.++|+++|+++..+ +++++..+......++++++.+|+.. .|.-.+
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 45799999999999999998765458999999999999 77777621000113568888888743 222221
Q ss_pred CCCCccCCccccchHHHHhhhhH-HHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 236 LSPIQNDGVVHMSLKRIWEETGC-EIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 236 gsG~t~~~~l~~~~~~l~~l~~l-Q~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
..- -.+.+. . ... +++++.+.++|+|||.++..+.+..
T Consensus 188 d~~------~~~~~~--~--~l~t~~~l~~~~~~LkpgG~lv~~~~~~~ 226 (314)
T 2b2c_A 188 DSS------DPVGPA--E--SLFGQSYYELLRDALKEDGILSSQGESVW 226 (314)
T ss_dssp CCC-----------------------HHHHHHHHEEEEEEEEEECCCTT
T ss_pred cCC------CCCCcc--h--hhhHHHHHHHHHhhcCCCeEEEEECCCcc
Confidence 100 001110 0 011 2789999999999999999876543
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.09 E-value=1.3e-05 Score=73.17 Aligned_cols=57 Identities=16% Similarity=0.117 Sum_probs=46.0
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcc-eEEEEEec
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIH-ALKLVKVG 226 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~-~v~~~~~D 226 (355)
++.+|||+|||+|..+..++.....++|+++|+++.++ +++|++ . .+.. ++.++++|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~--~--~~~~~~v~~~~~d 124 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVE--Q--NNLSDLIKVVKVP 124 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHH--H--TTCTTTEEEEECC
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHH--H--cCCCccEEEEEcc
Confidence 57899999999999999998876558999999999999 788876 3 2333 37777665
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=5.8e-06 Score=78.60 Aligned_cols=113 Identities=13% Similarity=-0.014 Sum_probs=69.3
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcccc-ccccCcceEEEEEecceeeecccCCCCCc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPY-DTVLDIHALKLVKVGGSVVYSTCSLSPIQ 240 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~-~~~~g~~~v~~~~~Da~~lDaPCSgsG~t 240 (355)
..++.+|||+|||.|+.+..++......+|+++|+++..+ +++++..+ .. ...+++.++..|+....... ..+ .
T Consensus 93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~-~~~~~v~~~~~D~~~~~~~~-~~~-~ 169 (304)
T 3bwc_A 93 HPKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRS-LADPRATVRVGDGLAFVRQT-PDN-T 169 (304)
T ss_dssp SSSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGG-GGCTTEEEEESCHHHHHHSS-CTT-C
T ss_pred CCCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcc-cCCCcEEEEECcHHHHHHhc-cCC-c
Confidence 3567899999999999999998764457999999999999 66666310 10 12356888888875311100 000 0
Q ss_pred cCCccc--cchHHHHhhhhH--HHHHHHHHhhccCCcEEEEEeCC
Q psy7769 241 NDGVVH--MSLKRIWEETGC--EIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 241 ~~~~l~--~~~~~l~~l~~l--Q~lL~~A~~~LkpGG~lVYsTCS 281 (355)
.+--+. ..+. .....+ .++++.+.+.|||||+++..+.+
T Consensus 170 fDvIi~d~~~~~--~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 212 (304)
T 3bwc_A 170 YDVVIIDTTDPA--GPASKLFGEAFYKDVLRILKPDGICCNQGES 212 (304)
T ss_dssp EEEEEEECC-----------CCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred eeEEEECCCCcc--ccchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 000000 0000 000111 27899999999999999987654
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.3e-05 Score=76.98 Aligned_cols=112 Identities=13% Similarity=0.020 Sum_probs=73.2
Q ss_pred HhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhhHHhhccccccccCc-ceEEEEEecceeeecccCCCC
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLSP 238 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rll~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG 238 (355)
..++..++.+|||+|||+|..+..+++..+..+++++|++. .+.+.+++ . .+. .++++..+|.. -..| +-..
T Consensus 178 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~~~~~~--~--~~~~~~v~~~~~d~~-~~~p-~~D~ 250 (348)
T 3lst_A 178 RAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAE-VVARHRLD--A--PDVAGRWKVVEGDFL-REVP-HADV 250 (348)
T ss_dssp HHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHH-HHTTCCCC--C--GGGTTSEEEEECCTT-TCCC-CCSE
T ss_pred HhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHH-Hhhccccc--c--cCCCCCeEEEecCCC-CCCC-CCcE
Confidence 34466788999999999999999999987667899999842 22323333 1 122 46899999975 2223 1111
Q ss_pred CccCCccc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCC
Q psy7769 239 IQNDGVVH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSP 284 (355)
Q Consensus 239 ~t~~~~l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~ 284 (355)
+.....++ |..... .++|+++.+.|||||+|+.....+..
T Consensus 251 v~~~~vlh~~~d~~~------~~~L~~~~~~LkpgG~l~i~e~~~~~ 291 (348)
T 3lst_A 251 HVLKRILHNWGDEDS------VRILTNCRRVMPAHGRVLVIDAVVPE 291 (348)
T ss_dssp EEEESCGGGSCHHHH------HHHHHHHHHTCCTTCEEEEEECCBCS
T ss_pred EEEehhccCCCHHHH------HHHHHHHHHhcCCCCEEEEEEeccCC
Confidence 11111122 433221 27899999999999999998765543
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.03 E-value=4.6e-06 Score=76.75 Aligned_cols=76 Identities=8% Similarity=0.001 Sum_probs=60.7
Q ss_pred EechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc
Q psy7769 150 CMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG 227 (355)
Q Consensus 150 ~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da 227 (355)
++.......+..+++.+|++|||+|||+|..|..+++.. ++|+|+|+++.++ +++++. . ..+++++++|+
T Consensus 14 ~d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~--~----~~~v~~~~~D~ 85 (244)
T 1qam_A 14 TSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLV--D----HDNFQVLNKDI 85 (244)
T ss_dssp CCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTT--T----CCSEEEECCCG
T ss_pred CCHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhc--c----CCCeEEEEChH
Confidence 333444555666778899999999999999999999886 7999999999999 777776 2 24789999998
Q ss_pred eeeecc
Q psy7769 228 SVVYST 233 (355)
Q Consensus 228 ~~lDaP 233 (355)
..++.+
T Consensus 86 ~~~~~~ 91 (244)
T 1qam_A 86 LQFKFP 91 (244)
T ss_dssp GGCCCC
T ss_pred HhCCcc
Confidence 776554
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.03 E-value=1.4e-05 Score=70.07 Aligned_cols=102 Identities=10% Similarity=-0.031 Sum_probs=65.4
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee---------ee
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV---------VY 231 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~---------lD 231 (355)
.+.+|.+|||+|||+|..+..++.. +..+|+++|+++.++ +++++. ++.++..|+.. +|
T Consensus 48 ~~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~---------~~~~~~~d~~~~~~~~D~v~~~ 117 (200)
T 1ne2_A 48 GNIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCG---------GVNFMVADVSEISGKYDTWIMN 117 (200)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCT---------TSEEEECCGGGCCCCEEEEEEC
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcC---------CCEEEECcHHHCCCCeeEEEEC
Confidence 4668899999999999999999887 335799999999999 666654 23555555432 33
Q ss_pred cccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 232 STCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 232 aPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
+|. .+.... ....+++.+++.+ |+ +|+.|.. .+...+...+..
T Consensus 118 ~p~-----------~~~~~~-----~~~~~l~~~~~~~--g~--~~~~~~~---~~~~~~~~~~~~ 160 (200)
T 1ne2_A 118 PPF-----------GSVVKH-----SDRAFIDKAFETS--MW--IYSIGNA---KARDFLRREFSA 160 (200)
T ss_dssp CCC-----------------------CHHHHHHHHHHE--EE--EEEEEEG---GGHHHHHHHHHH
T ss_pred CCc-----------hhccCc-----hhHHHHHHHHHhc--Cc--EEEEEcC---chHHHHHHHHHH
Confidence 332 111110 0015688888887 43 7777743 345556666654
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=6.8e-06 Score=78.34 Aligned_cols=77 Identities=12% Similarity=-0.044 Sum_probs=61.7
Q ss_pred EEechh-cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEe
Q psy7769 149 YCMDGA-SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKV 225 (355)
Q Consensus 149 ~~QD~a-S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~ 225 (355)
|+.|+. ....+..+++.+|++|||+|||+|..|..+++.. ++|+|+|+++.++ +++++. +..+++++++
T Consensus 32 fL~d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~--~~V~aVEid~~li~~a~~~~~------~~~~v~vi~g 103 (295)
T 3gru_A 32 FLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNA--KKVYVIEIDKSLEPYANKLKE------LYNNIEIIWG 103 (295)
T ss_dssp EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCGGGHHHHHHHHH------HCSSEEEEES
T ss_pred ccCCHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhc------cCCCeEEEEC
Confidence 455543 4455677788999999999999999999999874 7999999999999 777765 2357899999
Q ss_pred cceeeecc
Q psy7769 226 GGSVVYST 233 (355)
Q Consensus 226 Da~~lDaP 233 (355)
|+..+|.+
T Consensus 104 D~l~~~~~ 111 (295)
T 3gru_A 104 DALKVDLN 111 (295)
T ss_dssp CTTTSCGG
T ss_pred chhhCCcc
Confidence 99766554
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=5.6e-06 Score=79.13 Aligned_cols=107 Identities=11% Similarity=-0.085 Sum_probs=70.6
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccc-cCcceEEEEEeccee--------eecc
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTV-LDIHALKLVKVGGSV--------VYST 233 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~-~g~~~v~~~~~Da~~--------lDaP 233 (355)
..+.+|||+|||.|+.+..+++.....+|+++|+++..+ +++++..+... .+.++++++.+|+.. .|.-
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 345799999999999999988765457999999999999 67776511000 113568888888743 2222
Q ss_pred cCCCCCccCCcccc---chHHHHhhhhH--HHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 234 CSLSPIQNDGVVHM---SLKRIWEETGC--EIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 234 CSgsG~t~~~~l~~---~~~~l~~l~~l--Q~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
.+... ..+ .+ ...+ .+.++.+.+.|||||.++..+.+.
T Consensus 156 i~d~~------~~~~~~~~-----~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~ 198 (314)
T 1uir_A 156 IIDLT------DPVGEDNP-----ARLLYTVEFYRLVKAHLNPGGVMGMQTGMI 198 (314)
T ss_dssp EEECC------CCBSTTCG-----GGGGSSHHHHHHHHHTEEEEEEEEEEEEEE
T ss_pred EECCC------CcccccCc-----chhccHHHHHHHHHHhcCCCcEEEEEccCc
Confidence 11000 001 11 0112 278999999999999999886554
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.00 E-value=9e-06 Score=78.32 Aligned_cols=102 Identities=6% Similarity=-0.144 Sum_probs=70.8
Q ss_pred CeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee---------eecccCC
Q psy7769 168 DTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV---------VYSTCSL 236 (355)
Q Consensus 168 ~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~---------lDaPCSg 236 (355)
.+|||+|||.|+.+..+++.....+|+++|+++..+ +++++. . ....+++++..|+.. .|+-.+.
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~--~--~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D 166 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFD--I--PRAPRVKIRVDDARMVAESFTPASRDVIIRD 166 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSC--C--CCTTTEEEEESCHHHHHHTCCTTCEEEEEEC
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhcc--c--cCCCceEEEECcHHHHHhhccCCCCCEEEEC
Confidence 499999999999999999876567999999999999 677776 2 234678888888753 2222211
Q ss_pred CCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 237 SPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 237 sG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
.- ... ..+..+ . .++.++.+.+.|+|||.++..+.+-
T Consensus 167 ~~-~~~----~~~~~L---~-t~efl~~~~r~LkpgGvlv~~~~~~ 203 (317)
T 3gjy_A 167 VF-AGA----ITPQNF---T-TVEFFEHCHRGLAPGGLYVANCGDH 203 (317)
T ss_dssp CS-TTS----CCCGGG---S-BHHHHHHHHHHEEEEEEEEEEEEEC
T ss_pred CC-Ccc----ccchhh---h-HHHHHHHHHHhcCCCcEEEEEecCC
Confidence 00 000 001101 0 1278999999999999999888764
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=1.4e-05 Score=75.51 Aligned_cols=107 Identities=9% Similarity=-0.035 Sum_probs=71.2
Q ss_pred CeEeeecccC--cchHHHHHHhc-CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeee----cc--cCC
Q psy7769 168 DTVLDMCAAP--GGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVY----ST--CSL 236 (355)
Q Consensus 168 ~~VLD~CAgP--GgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lD----aP--CSg 236 (355)
..|||++||. |+.+..+++.. ...+|+++|.|+.++ .+.++. . .+..++.++..|....+ .| -.+
T Consensus 80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~--~--~~~~~~~~v~aD~~~~~~~l~~~~~~~~ 155 (277)
T 3giw_A 80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLA--S--TPEGRTAYVEADMLDPASILDAPELRDT 155 (277)
T ss_dssp CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHC--C--CSSSEEEEEECCTTCHHHHHTCHHHHTT
T ss_pred CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhc--c--CCCCcEEEEEecccChhhhhcccccccc
Confidence 6899999997 66677777754 458999999999999 666665 2 22347899999986532 11 011
Q ss_pred CC------CccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 237 SP------IQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 237 sG------~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
+- +.....++|-++.- ..+.+|+...+.|+|||+|+.++-+-
T Consensus 156 ~D~~~p~av~~~avLH~l~d~~----~p~~~l~~l~~~L~PGG~Lvls~~~~ 203 (277)
T 3giw_A 156 LDLTRPVALTVIAIVHFVLDED----DAVGIVRRLLEPLPSGSYLAMSIGTA 203 (277)
T ss_dssp CCTTSCCEEEEESCGGGSCGGG----CHHHHHHHHHTTSCTTCEEEEEEECC
T ss_pred cCcCCcchHHhhhhHhcCCchh----hHHHHHHHHHHhCCCCcEEEEEeccC
Confidence 10 00000033433210 01278999999999999999998664
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=3.5e-05 Score=74.55 Aligned_cols=114 Identities=8% Similarity=-0.043 Sum_probs=78.5
Q ss_pred hhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCC
Q psy7769 161 ALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSP 238 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG 238 (355)
.++..++.+|||++||+|..+..+++..+..+++..|. +..+ +++++. . .+..+|+++.+|... |++-.+.-
T Consensus 174 ~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~--~--~~~~rv~~~~gD~~~-~~~~~~D~ 247 (353)
T 4a6d_A 174 AFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFS--F--QEEEQIDFQEGDFFK-DPLPEADL 247 (353)
T ss_dssp SSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSC--C----CCSEEEEESCTTT-SCCCCCSE
T ss_pred hcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhh--h--cccCceeeecCcccc-CCCCCceE
Confidence 33556778999999999999999999887778888887 5556 666665 2 345789999999753 22211111
Q ss_pred CccCCc-cc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCC
Q psy7769 239 IQNDGV-VH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQN 287 (355)
Q Consensus 239 ~t~~~~-l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~EN 287 (355)
..-++ ++ |..+... +||+++.+.|+|||+|+....-+.+..+
T Consensus 248 -~~~~~vlh~~~d~~~~------~iL~~~~~al~pgg~lli~e~~~~~~~~ 291 (353)
T 4a6d_A 248 -YILARVLHDWADGKCS------HLLERIYHTCKPGGGILVIESLLDEDRR 291 (353)
T ss_dssp -EEEESSGGGSCHHHHH------HHHHHHHHHCCTTCEEEEEECCCCTTSC
T ss_pred -EEeeeecccCCHHHHH------HHHHHHHhhCCCCCEEEEEEeeeCCCCC
Confidence 11111 32 5544322 7899999999999999998876655443
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=97.98 E-value=2e-05 Score=77.69 Aligned_cols=66 Identities=17% Similarity=-0.008 Sum_probs=52.5
Q ss_pred HhhCCCCCCeEeeecccCcchHHHHHHhcCC--------------------------------------CcEEEEcCCch
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKTLVALQTLYP--------------------------------------DYYCMDGASLL 201 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~--------------------------------------g~V~AvD~s~~ 201 (355)
.+.+.++++.|||.+||+|+..+.+|.+..+ ..|+++|+++.
T Consensus 188 ~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~ 267 (384)
T 3ldg_A 188 LLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGR 267 (384)
T ss_dssp HHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHH
T ss_pred HHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHH
Confidence 4456788999999999999999988876432 46999999999
Q ss_pred hh--HHhhccccccccCcc-eEEEEEeccee
Q psy7769 202 PV--LALNIRPYDTVLDIH-ALKLVKVGGSV 229 (355)
Q Consensus 202 Rl--l~~~l~r~~~~~g~~-~v~~~~~Da~~ 229 (355)
++ +++|++ . .|.. .+.+.+.|+..
T Consensus 268 al~~Ar~Na~--~--~gl~~~I~~~~~D~~~ 294 (384)
T 3ldg_A 268 MVEIARKNAR--E--VGLEDVVKLKQMRLQD 294 (384)
T ss_dssp HHHHHHHHHH--H--TTCTTTEEEEECCGGG
T ss_pred HHHHHHHHHH--H--cCCCCceEEEECChHH
Confidence 99 888988 3 3553 48888888754
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.97 E-value=2e-05 Score=77.67 Aligned_cols=67 Identities=6% Similarity=-0.122 Sum_probs=53.3
Q ss_pred HhhCCCCCCeEeeecccCcchHHHHHHhcCC--------------------------------------CcEEEEcCCch
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKTLVALQTLYP--------------------------------------DYYCMDGASLL 201 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~--------------------------------------g~V~AvD~s~~ 201 (355)
.+.+..+|..|||.|||+|+.++.+|.+..+ ..|+++|+++.
T Consensus 189 ~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ 268 (385)
T 3ldu_A 189 YLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEE 268 (385)
T ss_dssp HTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHH
T ss_pred HhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHH
Confidence 4456778999999999999999998876422 57999999999
Q ss_pred hh--HHhhccccccccCc-ceEEEEEecceee
Q psy7769 202 PV--LALNIRPYDTVLDI-HALKLVKVGGSVV 230 (355)
Q Consensus 202 Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~l 230 (355)
++ ++.|+. . .|. .++.+.+.|+..+
T Consensus 269 ai~~Ar~Na~--~--~gl~~~i~~~~~D~~~l 296 (385)
T 3ldu_A 269 SIDIARENAE--I--AGVDEYIEFNVGDATQF 296 (385)
T ss_dssp HHHHHHHHHH--H--HTCGGGEEEEECCGGGC
T ss_pred HHHHHHHHHH--H--cCCCCceEEEECChhhc
Confidence 99 888887 3 344 3688888887653
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.96 E-value=7.3e-06 Score=81.59 Aligned_cols=82 Identities=10% Similarity=-0.066 Sum_probs=58.7
Q ss_pred echhcHHHHHhh--CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEec
Q psy7769 151 MDGASLLPVLAL--NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVG 226 (355)
Q Consensus 151 QD~aS~l~~~~L--~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~D 226 (355)
|..++..++..- ...+|.+|||+|||+|..++.++... ++|+++|+|+.++ +++|++ .+..|..+++++++|
T Consensus 76 eQat~e~vA~~~a~~l~~g~~VLDLgcG~G~~al~LA~~g--~~V~~VD~s~~~l~~Ar~N~~--~~~~gl~~i~~i~~D 151 (410)
T 3ll7_A 76 EQSSGAVTSSYKSRFIREGTKVVDLTGGLGIDFIALMSKA--SQGIYIERNDETAVAARHNIP--LLLNEGKDVNILTGD 151 (410)
T ss_dssp HHSCCHHHHHHGGGGSCTTCEEEESSCSSSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHH--HHSCTTCEEEEEESC
T ss_pred hhcCHHHHHHHHHHhcCCCCEEEEeCCCchHHHHHHHhcC--CEEEEEECCHHHHHHHHHhHH--HhccCCCcEEEEECc
Confidence 344454444321 13359999999999999999988764 7999999999999 888887 310145678888777
Q ss_pred ce--------------eeecccCC
Q psy7769 227 GS--------------VVYSTCSL 236 (355)
Q Consensus 227 a~--------------~lDaPCSg 236 (355)
+. .+|||-.+
T Consensus 152 a~~~L~~~~~~~fDvV~lDPPrr~ 175 (410)
T 3ll7_A 152 FKEYLPLIKTFHPDYIYVDPARRS 175 (410)
T ss_dssp GGGSHHHHHHHCCSEEEECCEEC-
T ss_pred HHHhhhhccCCCceEEEECCCCcC
Confidence 53 27888754
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=1.5e-05 Score=75.09 Aligned_cols=76 Identities=13% Similarity=-0.047 Sum_probs=61.7
Q ss_pred EEEech-hcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEE
Q psy7769 148 YYCMDG-ASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVK 224 (355)
Q Consensus 148 ~~~QD~-aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~ 224 (355)
-++.|+ -....+..+++.+| +|||+|||+|..|..+++.. ++|+|+|+++.++ +++++. . .++++++
T Consensus 28 nfL~d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~--~-----~~v~vi~ 97 (271)
T 3fut_A 28 NFLVSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLS--G-----LPVRLVF 97 (271)
T ss_dssp CEECCHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTT--T-----SSEEEEE
T ss_pred cccCCHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcC--C-----CCEEEEE
Confidence 455554 34556677789999 99999999999999999875 7999999999999 777765 2 4689999
Q ss_pred ecceeeecc
Q psy7769 225 VGGSVVYST 233 (355)
Q Consensus 225 ~Da~~lDaP 233 (355)
+|+..+|.+
T Consensus 98 ~D~l~~~~~ 106 (271)
T 3fut_A 98 QDALLYPWE 106 (271)
T ss_dssp SCGGGSCGG
T ss_pred CChhhCChh
Confidence 999877665
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=5.2e-06 Score=81.57 Aligned_cols=101 Identities=7% Similarity=-0.113 Sum_probs=65.7
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc-------ee
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG-------SV 229 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da-------~~ 229 (355)
...+.+.++.+|||+|||+|..+..++... ..|+++|+|+.++ ++++-. ......+...|+ ..
T Consensus 100 ~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g--~~v~gvD~s~~~~~~a~~~~~------~~~~~~~~~~~~~~l~~~~~~ 171 (416)
T 4e2x_A 100 LATELTGPDPFIVEIGCNDGIMLRTIQEAG--VRHLGFEPSSGVAAKAREKGI------RVRTDFFEKATADDVRRTEGP 171 (416)
T ss_dssp HHTTTCSSSCEEEEETCTTTTTHHHHHHTT--CEEEEECCCHHHHHHHHTTTC------CEECSCCSHHHHHHHHHHHCC
T ss_pred HHHhCCCCCCEEEEecCCCCHHHHHHHHcC--CcEEEECCCHHHHHHHHHcCC------CcceeeechhhHhhcccCCCC
Confidence 344566789999999999999999998864 5899999999998 443311 100000111111 11
Q ss_pred eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 230 VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 230 lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
+|.-.+... +..+.....+|+++.++|||||+++.++-
T Consensus 172 fD~I~~~~v-------------l~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 209 (416)
T 4e2x_A 172 ANVIYAANT-------------LCHIPYVQSVLEGVDALLAPDGVFVFEDP 209 (416)
T ss_dssp EEEEEEESC-------------GGGCTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEEECCh-------------HHhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 444442211 22222334889999999999999999864
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.6e-05 Score=75.10 Aligned_cols=79 Identities=11% Similarity=-0.035 Sum_probs=60.9
Q ss_pred EEEech-hcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCC--CcEEEEcCCchhh--HHhhccccccccCcceEEE
Q psy7769 148 YYCMDG-ASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYP--DYYCMDGASLLPV--LALNIRPYDTVLDIHALKL 222 (355)
Q Consensus 148 ~~~QD~-aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~--g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~ 222 (355)
-++.|+ -....+..+++.+|++|||+|||+|..|..++..... ++|+|+|+++.++ ++++. ..++++
T Consensus 23 ~fL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--------~~~v~~ 94 (279)
T 3uzu_A 23 NFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--------GELLEL 94 (279)
T ss_dssp CEECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--------GGGEEE
T ss_pred cccCCHHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--------CCCcEE
Confidence 345553 3445567778899999999999999999999987632 5599999999999 66552 135889
Q ss_pred EEecceeeeccc
Q psy7769 223 VKVGGSVVYSTC 234 (355)
Q Consensus 223 ~~~Da~~lDaPC 234 (355)
+++|+..+|.+-
T Consensus 95 i~~D~~~~~~~~ 106 (279)
T 3uzu_A 95 HAGDALTFDFGS 106 (279)
T ss_dssp EESCGGGCCGGG
T ss_pred EECChhcCChhH
Confidence 999998776654
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.91 E-value=2.8e-06 Score=77.90 Aligned_cols=124 Identities=10% Similarity=-0.012 Sum_probs=78.9
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEe
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKV 225 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~ 225 (355)
|..+.......+..+++.+|++|||+|||+|..|..++... ++|+|+|+++.++ +++++. +..+++++.+
T Consensus 11 fl~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~------~~~~v~~~~~ 82 (245)
T 1yub_A 11 FLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLK------LNTRVTLIHQ 82 (245)
T ss_dssp BCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTT------TCSEEEECCS
T ss_pred CCCCHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhc------cCCceEEEEC
Confidence 44455556667778888999999999999999999999875 7999999999998 655554 2357888888
Q ss_pred cceeeecccC-CCCCccCCccccchHHHHhhh---hHH-HHH----HHHHhhccCCcEEEEEe
Q psy7769 226 GGSVVYSTCS-LSPIQNDGVVHMSLKRIWEET---GCE-IEI----KHALKLVKVGGSVVYST 279 (355)
Q Consensus 226 Da~~lDaPCS-gsG~t~~~~l~~~~~~l~~l~---~lQ-~lL----~~A~~~LkpGG~lVYsT 279 (355)
|+..++.+-. ..-+........+...+.... ... ..+ +.+.++|+|||+++..+
T Consensus 83 D~~~~~~~~~~~f~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 83 DILQFQFPNKQRYKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp CCTTTTCCCSSEEEEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred ChhhcCcccCCCcEEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 8765443210 000000000001111111111 111 334 77999999999876654
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=97.91 E-value=1.3e-05 Score=74.49 Aligned_cols=71 Identities=10% Similarity=-0.130 Sum_probs=54.6
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeec
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYS 232 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDa 232 (355)
....+..+++.+|++|||+|||+|..|. ++. ...++|+|+|+++.++ +++++. . .++++++++|+..+|.
T Consensus 10 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~--~----~~~v~~i~~D~~~~~~ 81 (252)
T 1qyr_A 10 IDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPF--L----GPKLTIYQQDAMTFNF 81 (252)
T ss_dssp HHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTT--T----GGGEEEECSCGGGCCH
T ss_pred HHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhc--c----CCceEEEECchhhCCH
Confidence 3345566788999999999999999999 653 3223399999999999 777766 2 2578999999977654
Q ss_pred c
Q psy7769 233 T 233 (355)
Q Consensus 233 P 233 (355)
+
T Consensus 82 ~ 82 (252)
T 1qyr_A 82 G 82 (252)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=4.1e-05 Score=74.47 Aligned_cols=105 Identities=10% Similarity=-0.002 Sum_probs=70.8
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhhHHhhccccccccCcceEEEEEecceeeecccCCCCCccCC
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDG 243 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rll~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~~ 243 (355)
..++.+|||+|||+|..+..+++..+..+++++|+ +..+ ...+ . ..+++++.+|... +.| .+.-+....
T Consensus 201 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~--~~a~--~----~~~v~~~~~d~~~-~~p-~~D~v~~~~ 269 (368)
T 3reo_A 201 FEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVI--QDAP--A----FSGVEHLGGDMFD-GVP-KGDAIFIKW 269 (368)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH--TTCC--C----CTTEEEEECCTTT-CCC-CCSEEEEES
T ss_pred ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHH--Hhhh--h----cCCCEEEecCCCC-CCC-CCCEEEEec
Confidence 45678999999999999999999887788999999 6555 1122 1 1457888888753 223 111100000
Q ss_pred ccc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCC
Q psy7769 244 VVH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPI 285 (355)
Q Consensus 244 ~l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ 285 (355)
.++ |...... ++|+++.+.|||||+|+.....+...
T Consensus 270 vlh~~~~~~~~------~~l~~~~~~L~pgG~l~i~e~~~~~~ 306 (368)
T 3reo_A 270 ICHDWSDEHCL------KLLKNCYAALPDHGKVIVAEYILPPS 306 (368)
T ss_dssp CGGGBCHHHHH------HHHHHHHHHSCTTCEEEEEECCCCSS
T ss_pred hhhcCCHHHHH------HHHHHHHHHcCCCCEEEEEEeccCCC
Confidence 022 4433221 78999999999999999988776443
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=5.2e-05 Score=73.67 Aligned_cols=104 Identities=12% Similarity=-0.036 Sum_probs=71.5
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhhHHhhccccccccCcceEEEEEecceeeecccCCCCCccCC
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDG 243 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rll~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~~ 243 (355)
..++.+|||+|||+|..+..+++..+..+++++|+ +..+ ...+ . ..+++++.+|... +.|- +.- ..-.
T Consensus 199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~--~~a~--~----~~~v~~~~~D~~~-~~p~-~D~-v~~~ 266 (364)
T 3p9c_A 199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVI--SEAP--Q----FPGVTHVGGDMFK-EVPS-GDT-ILMK 266 (364)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH--TTCC--C----CTTEEEEECCTTT-CCCC-CSE-EEEE
T ss_pred ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHH--Hhhh--h----cCCeEEEeCCcCC-CCCC-CCE-EEeh
Confidence 56788999999999999999999877788999999 6554 1122 1 1458899999754 3331 111 0111
Q ss_pred c-cc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCC
Q psy7769 244 V-VH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPI 285 (355)
Q Consensus 244 ~-l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ 285 (355)
+ ++ |..+... ++|+++.+.|||||+|+.....+...
T Consensus 267 ~vlh~~~d~~~~------~~L~~~~~~L~pgG~l~i~e~~~~~~ 304 (364)
T 3p9c_A 267 WILHDWSDQHCA------TLLKNCYDALPAHGKVVLVQCILPVN 304 (364)
T ss_dssp SCGGGSCHHHHH------HHHHHHHHHSCTTCEEEEEECCBCSS
T ss_pred HHhccCCHHHHH------HHHHHHHHHcCCCCEEEEEEeccCCC
Confidence 1 22 4433222 78999999999999999988776443
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=97.84 E-value=3.3e-05 Score=72.08 Aligned_cols=110 Identities=10% Similarity=-0.077 Sum_probs=74.1
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee----eecccCCCCC
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV----VYSTCSLSPI 239 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~----lDaPCSgsG~ 239 (355)
.+.+|||+|||.|+.+..++.. + ++|+++|+++..+ +++++..+......+++.++.+|+.. .|+-.+...
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d~~- 148 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCLQE- 148 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEESSC-
T ss_pred CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEECCC-
Confidence 4579999999999999988877 6 8999999999999 66666511000112468888888753 344432110
Q ss_pred ccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 240 QNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 240 t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
.+. ..++.+.+.|+|||.++..+++.. .+...+..+++.
T Consensus 149 --------dp~---------~~~~~~~~~L~pgG~lv~~~~~~~--~~~~~~~~~~~~ 187 (262)
T 2cmg_A 149 --------PDI---------HRIDGLKRMLKEDGVFISVAKHPL--LEHVSMQNALKN 187 (262)
T ss_dssp --------CCH---------HHHHHHHTTEEEEEEEEEEEECTT--TCHHHHHHHHHH
T ss_pred --------ChH---------HHHHHHHHhcCCCcEEEEEcCCcc--cCHHHHHHHHHH
Confidence 111 368899999999999999876643 233444444443
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.82 E-value=7.7e-05 Score=73.67 Aligned_cols=67 Identities=10% Similarity=-0.019 Sum_probs=52.9
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCC--------------------------------------CcEEEEcCCc
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYP--------------------------------------DYYCMDGASL 200 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~--------------------------------------g~V~AvD~s~ 200 (355)
+.+.+..++..|||.|||+|..++.+|.+..+ ..|+++|+++
T Consensus 194 l~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~ 273 (393)
T 3k0b_A 194 VLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDA 273 (393)
T ss_dssp HHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCH
T ss_pred HHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCH
Confidence 34556788999999999999999988876432 4699999999
Q ss_pred hhh--HHhhccccccccCcc-eEEEEEeccee
Q psy7769 201 LPV--LALNIRPYDTVLDIH-ALKLVKVGGSV 229 (355)
Q Consensus 201 ~Rl--l~~~l~r~~~~~g~~-~v~~~~~Da~~ 229 (355)
.++ ++.|+. . .|.. ++.+.+.|+..
T Consensus 274 ~al~~Ar~Na~--~--~gl~~~I~~~~~D~~~ 301 (393)
T 3k0b_A 274 RLIEIAKQNAV--E--AGLGDLITFRQLQVAD 301 (393)
T ss_dssp HHHHHHHHHHH--H--TTCTTCSEEEECCGGG
T ss_pred HHHHHHHHHHH--H--cCCCCceEEEECChHh
Confidence 999 888888 3 3543 47888888754
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=97.79 E-value=2.2e-05 Score=69.97 Aligned_cols=94 Identities=12% Similarity=0.010 Sum_probs=58.9
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccCC
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDG 243 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~~ 243 (355)
++.+|||+|||+|..+..++.. +++|+++.++ ++++ ++.+...|...++.+- + .-
T Consensus 47 ~~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-----------~~~~~~~d~~~~~~~~---~---~f 103 (219)
T 1vlm_A 47 PEGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-----------GVFVLKGTAENLPLKD---E---SF 103 (219)
T ss_dssp CSSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-----------TCEEEECBTTBCCSCT---T---CE
T ss_pred CCCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-----------CCEEEEcccccCCCCC---C---Ce
Confidence 4889999999999998877543 9999999988 4433 1345555553322110 0 00
Q ss_pred ccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 244 VVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 244 ~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
++.+...-+..+...+.+|+.+.++|+|||.++.++...
T Consensus 104 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 142 (219)
T 1vlm_A 104 DFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDR 142 (219)
T ss_dssp EEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred eEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeCC
Confidence 011111111122233478999999999999999987643
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.78 E-value=5.3e-05 Score=66.93 Aligned_cols=116 Identities=10% Similarity=-0.019 Sum_probs=70.0
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeeccc
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTC 234 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPC 234 (355)
+...+....++.+|||+|||+|..+..++ ..|+++|+++..+ ....+. . ... .++ .+|.-.
T Consensus 58 ~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~~~~~~~~d~~--~--~~~-------~~~-~fD~v~ 120 (215)
T 2zfu_A 58 IARDLRQRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASLDPRVTVCDMA--Q--VPL-------EDE-SVDVAV 120 (215)
T ss_dssp HHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCSSTTEEESCTT--S--CSC-------CTT-CEEEEE
T ss_pred HHHHHhccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCCCceEEEeccc--c--CCC-------CCC-CEeEEE
Confidence 44444445688999999999999877662 6899999998643 111111 0 000 000 123222
Q ss_pred CCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhhhccCceEEE
Q psy7769 235 SLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEI 308 (355)
Q Consensus 235 SgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~~~~~~ 308 (355)
+... +++ .....+|+++.++|+|||.++.+++... ..+...+...|++ .|+++..
T Consensus 121 ~~~~------l~~--------~~~~~~l~~~~~~L~~gG~l~i~~~~~~-~~~~~~~~~~l~~----~Gf~~~~ 175 (215)
T 2zfu_A 121 FCLS------LMG--------TNIRDFLEEANRVLKPGGLLKVAEVSSR-FEDVRTFLRAVTK----LGFKIVS 175 (215)
T ss_dssp EESC------CCS--------SCHHHHHHHHHHHEEEEEEEEEEECGGG-CSCHHHHHHHHHH----TTEEEEE
T ss_pred Eehh------ccc--------cCHHHHHHHHHHhCCCCeEEEEEEcCCC-CCCHHHHHHHHHH----CCCEEEE
Confidence 1111 111 1223789999999999999999887642 2366677777765 3544433
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.77 E-value=4e-05 Score=78.82 Aligned_cols=145 Identities=12% Similarity=0.010 Sum_probs=87.9
Q ss_pred EEEechhcHHHHHhhC----CCCCCeEeeecccCcchHHHHHHhcC---CCcEEEEcCCchhh--HHhhccccccccCc-
Q psy7769 148 YYCMDGASLLPVLALN----IRPYDTVLDMCAAPGGKTLVALQTLY---PDYYCMDGASLLPV--LALNIRPYDTVLDI- 217 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~----~~pG~~VLD~CAgPGgKT~~la~~~~---~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~- 217 (355)
||--..-+.+.+.++. +.+|.+|||.|||+|+..+.++..+. ...++|+|+++..+ ++.|+. . .|.
T Consensus 199 fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~--l--~gi~ 274 (542)
T 3lkd_A 199 FYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMI--L--HGVP 274 (542)
T ss_dssp CCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHH--H--TTCC
T ss_pred ecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHH--H--cCCC
Confidence 4444444555566665 67899999999999999998887642 46899999999988 555654 1 233
Q ss_pred -ceEEEEEecce---------------eeecccCCCCCccCCc----cccchHH-HHhhhhHH-HHHHHHHhhcc-CCcE
Q psy7769 218 -HALKLVKVGGS---------------VVYSTCSLSPIQNDGV----VHMSLKR-IWEETGCE-IEIKHALKLVK-VGGS 274 (355)
Q Consensus 218 -~~v~~~~~Da~---------------~lDaPCSgsG~t~~~~----l~~~~~~-l~~l~~lQ-~lL~~A~~~Lk-pGG~ 274 (355)
.++.+.++|.. ...||.++.. ..... .+|.... +....... ..+.++++.|+ +||+
T Consensus 275 ~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~-~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr 353 (542)
T 3lkd_A 275 IENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKW-SASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGV 353 (542)
T ss_dssp GGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCC-CCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCE
T ss_pred cCccceEecceecccccccccccccEEEecCCcCCcc-ccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCcee
Confidence 45566665542 2566664321 11100 0111100 11112223 57999999999 9999
Q ss_pred EEEEeCC--CCCCCCHHHHHHHHHh
Q psy7769 275 VVYSTCS--LSPIQNDGVVHMSLKR 297 (355)
Q Consensus 275 lVYsTCS--l~~~ENE~vV~~~L~~ 297 (355)
+++.+-. ++..-.+..+++.|-+
T Consensus 354 ~a~VlP~g~Lf~~~~~~~iRk~Lle 378 (542)
T 3lkd_A 354 MAIVLPHGVLFRGNAEGTIRKALLE 378 (542)
T ss_dssp EEEEEETHHHHCCTHHHHHHHHHHH
T ss_pred EEEEecchHhhCCchhHHHHHHHHh
Confidence 9876543 2222225667766654
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=6.3e-05 Score=74.77 Aligned_cols=91 Identities=12% Similarity=0.019 Sum_probs=64.4
Q ss_pred CCCeEeeeccc------CcchHHHHHHhc-CCCcEEEEcCCchhhHHhhccccccccCcceEEEEEeccee---------
Q psy7769 166 PYDTVLDMCAA------PGGKTLVALQTL-YPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKVGGSV--------- 229 (355)
Q Consensus 166 pG~~VLD~CAg------PGgKT~~la~~~-~~g~V~AvD~s~~Rll~~~l~r~~~~~g~~~v~~~~~Da~~--------- 229 (355)
++.+|||+||| +|+.++.++... ..++|+++|+++.+. . ...+++++++|+..
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~-----~------~~~rI~fv~GDa~dlpf~~~l~~ 284 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH-----V------DELRIRTIQGDQNDAEFLDRIAR 284 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG-----G------CBTTEEEEECCTTCHHHHHHHHH
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh-----h------cCCCcEEEEecccccchhhhhhc
Confidence 56899999999 788888888754 568999999999763 1 12467888888754
Q ss_pred ----eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 230 ----VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 230 ----lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
+|...+. | .++ ....+..|++++++|||||+++.....
T Consensus 285 ~d~sFDlVisd-g------sH~-------~~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 285 RYGPFDIVIDD-G------SHI-------NAHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp HHCCEEEEEEC-S------CCC-------HHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred ccCCccEEEEC-C------ccc-------chhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 2333211 1 011 112237899999999999999998554
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=5.6e-05 Score=71.28 Aligned_cols=39 Identities=13% Similarity=-0.082 Sum_probs=31.0
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCch
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLL 201 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~ 201 (355)
.++++.+|||+||||||++..+++..+.+.|+++|+...
T Consensus 71 ~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvD 109 (277)
T 3evf_A 71 YVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRD 109 (277)
T ss_dssp SSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT
T ss_pred CCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEecc
Confidence 357899999999999999988877644457788887743
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=97.70 E-value=2.6e-05 Score=72.28 Aligned_cols=72 Identities=22% Similarity=0.099 Sum_probs=57.2
Q ss_pred hhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceee
Q psy7769 153 GASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVV 230 (355)
Q Consensus 153 ~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~l 230 (355)
.-....+..+++.+|++|||+|||+|..|..++.. +.++|+|+|+++.++ ++++ . . .+++++++|+..+
T Consensus 18 ~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~-~--~-----~~v~~i~~D~~~~ 88 (249)
T 3ftd_A 18 GVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSI-G--D-----ERLEVINEDASKF 88 (249)
T ss_dssp HHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTS-C--C-----TTEEEECSCTTTC
T ss_pred HHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhc-c--C-----CCeEEEEcchhhC
Confidence 33445567778889999999999999999999876 237999999999998 6555 3 1 3688999998776
Q ss_pred ecc
Q psy7769 231 YST 233 (355)
Q Consensus 231 DaP 233 (355)
|.+
T Consensus 89 ~~~ 91 (249)
T 3ftd_A 89 PFC 91 (249)
T ss_dssp CGG
T ss_pred Chh
Confidence 655
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=7.9e-05 Score=70.90 Aligned_cols=101 Identities=12% Similarity=-0.043 Sum_probs=59.2
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhhHHhh-ccccccccCcceEEEE-----------Eecceeee
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALN-IRPYDTVLDIHALKLV-----------KVGGSVVY 231 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rll~~~-l~r~~~~~g~~~v~~~-----------~~Da~~lD 231 (355)
.++|.+|||+||||||++..+++..+-..|+++|+......... .. . .+...+.+. ..|....|
T Consensus 79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~--~--~~~~iv~~~~~~di~~l~~~~~DlVlsD 154 (300)
T 3eld_A 79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQ--T--LGWNIVKFKDKSNVFTMPTEPSDTLLCD 154 (300)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCC--B--TTGGGEEEECSCCTTTSCCCCCSEEEEC
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccccc--c--cCCceEEeecCceeeecCCCCcCEEeec
Confidence 46899999999999999999987654357889999754220000 00 0 011111111 11222244
Q ss_pred cccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCC-cEEEEEeCC
Q psy7769 232 STCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVG-GSVVYSTCS 281 (355)
Q Consensus 232 aPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpG-G~lVYsTCS 281 (355)
.-.+ +|. |. +.+ ..+ .||.-|..+|+|| |.+|.-.--
T Consensus 155 ~APn-sG~-------~~---~D~--~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 155 IGES-SSN-------PL---VER--DRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp CCCC-CSS-------HH---HHH--HHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred CcCC-CCC-------HH---HHH--HHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 4444 552 11 111 123 6799999999999 999986444
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=7.9e-05 Score=72.24 Aligned_cols=99 Identities=13% Similarity=0.033 Sum_probs=67.5
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhhHHhhccccccccCcceEEEEEeccee----eecccCCCCC
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKVGGSV----VYSTCSLSPI 239 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rll~~~l~r~~~~~g~~~v~~~~~Da~~----lDaPCSgsG~ 239 (355)
..++.+|||+|||+|..+..+++..+..+++++|+ +..+ +..+ . ..++.++.+|... .|+-.+..
T Consensus 207 ~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~--~~a~--~----~~~v~~~~~d~~~~~~~~D~v~~~~-- 275 (372)
T 1fp1_D 207 FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVI--ENAP--P----LSGIEHVGGDMFASVPQGDAMILKA-- 275 (372)
T ss_dssp TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH--TTCC--C----CTTEEEEECCTTTCCCCEEEEEEES--
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHH--Hhhh--h----cCCCEEEeCCcccCCCCCCEEEEec--
Confidence 56788999999999999999999876678999999 7665 1122 1 1347888888743 22222110
Q ss_pred ccCCccc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 240 QNDGVVH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 240 t~~~~l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
.++ |.... ..++|+++.+.|||||+|+.+...+.
T Consensus 276 ----~lh~~~d~~------~~~~l~~~~~~L~pgG~l~i~e~~~~ 310 (372)
T 1fp1_D 276 ----VCHNWSDEK------CIEFLSNCHKALSPNGKVIIVEFILP 310 (372)
T ss_dssp ----SGGGSCHHH------HHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred ----ccccCCHHH------HHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 022 32221 11789999999999999998865543
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.66 E-value=2.5e-05 Score=72.78 Aligned_cols=68 Identities=21% Similarity=0.022 Sum_probs=51.8
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCc-------hhh--HHhhccccccccCcce-EEEEE
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASL-------LPV--LALNIRPYDTVLDIHA-LKLVK 224 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~-------~Rl--l~~~l~r~~~~~g~~~-v~~~~ 224 (355)
..+...++.+.+|++|||+|||+|..++.+|... ++|+++|+++ ..+ +++|++ . .+..+ +++++
T Consensus 72 ~~~l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~g--~~V~~vD~s~~~~~ll~~~l~~a~~n~~--~--~~~~~ri~~~~ 145 (258)
T 2r6z_A 72 GELIAKAVNHTAHPTVWDATAGLGRDSFVLASLG--LTVTAFEQHPAVACLLSDGIRRALLNPE--T--QDTAARINLHF 145 (258)
T ss_dssp -CHHHHHTTGGGCCCEEETTCTTCHHHHHHHHTT--CCEEEEECCHHHHHHHHHHHHHHHHSHH--H--HHHHTTEEEEE
T ss_pred hHHHHHHhCcCCcCeEEEeeCccCHHHHHHHHhC--CEEEEEECChhhhHHHHHHHHHHHhHHH--h--hCCccCeEEEE
Confidence 3455555677788999999999999999999864 7999999999 777 666665 2 23433 78887
Q ss_pred ecce
Q psy7769 225 VGGS 228 (355)
Q Consensus 225 ~Da~ 228 (355)
+|+.
T Consensus 146 ~d~~ 149 (258)
T 2r6z_A 146 GNAA 149 (258)
T ss_dssp SCHH
T ss_pred CCHH
Confidence 7764
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=7.9e-05 Score=70.13 Aligned_cols=104 Identities=9% Similarity=-0.044 Sum_probs=63.2
Q ss_pred CCCeEeeecccCcc----hHHHHHHhcC----CCcEEEEcCCchhh--HHhhcccc------------ccc-------cC
Q psy7769 166 PYDTVLDMCAAPGG----KTLVALQTLY----PDYYCMDGASLLPV--LALNIRPY------------DTV-------LD 216 (355)
Q Consensus 166 pG~~VLD~CAgPGg----KT~~la~~~~----~g~V~AvD~s~~Rl--l~~~l~r~------------~~~-------~g 216 (355)
++.+|||+|||+|- .+..+++..+ ..+|+|+|+|+.++ +++++... +|. .+
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45699999999998 4445555533 24899999999999 66654200 000 00
Q ss_pred ---c-----ceEEEEEecceeeecccCCCC---CccCCc-cc-cchHHHHhhhhHH-HHHHHHHhhccCCcEEEEE
Q psy7769 217 ---I-----HALKLVKVGGSVVYSTCSLSP---IQNDGV-VH-MSLKRIWEETGCE-IEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 217 ---~-----~~v~~~~~Da~~lDaPCSgsG---~t~~~~-l~-~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYs 278 (355)
+ .+|.|...|... .|....| +...++ +. +.+. .| +++....+.|+|||.|+..
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~--~~~~~~~~fDlI~crnvliyf~~~-------~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLE--KQYNVPGPFDAIFCRNVMIYFDKT-------TQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTC--SSCCCCCCEEEEEECSSGGGSCHH-------HHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeechhhcccCeEEecccCC--CCCCcCCCeeEEEECCchHhCCHH-------HHHHHHHHHHHHhCCCcEEEEE
Confidence 0 257788887643 2221111 011122 22 3322 23 8999999999999999873
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00017 Score=76.42 Aligned_cols=115 Identities=9% Similarity=-0.041 Sum_probs=75.3
Q ss_pred HhhCCCCCCeEeeecccCcchHHHHHHhcC------------------------------------------CCcEEEEc
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKTLVALQTLY------------------------------------------PDYYCMDG 197 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT~~la~~~~------------------------------------------~g~V~AvD 197 (355)
.+.+..++..|||.|||+|+..+.+|.+.. ...|+++|
T Consensus 184 ~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~D 263 (703)
T 3v97_A 184 MRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSD 263 (703)
T ss_dssp HHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_pred HhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEE
Confidence 444678899999999999999988886531 25799999
Q ss_pred CCchhh--HHhhccccccccCcc-eEEEEEecceeeecccC--CCCC-ccCCc--cccchHHHHhhhhHHHHHHHHHhhc
Q psy7769 198 ASLLPV--LALNIRPYDTVLDIH-ALKLVKVGGSVVYSTCS--LSPI-QNDGV--VHMSLKRIWEETGCEIEIKHALKLV 269 (355)
Q Consensus 198 ~s~~Rl--l~~~l~r~~~~~g~~-~v~~~~~Da~~lDaPCS--gsG~-t~~~~--l~~~~~~l~~l~~lQ~lL~~A~~~L 269 (355)
+++.++ ++.|+. . .|.. .+.+.+.|+..+..|.. ..|+ ...++ .++. ....+..+.+.+...++.+
T Consensus 264 id~~av~~A~~N~~--~--agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg--~~~~l~~ly~~l~~~lk~~ 337 (703)
T 3v97_A 264 SDARVIQRARTNAR--L--AGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLD--SEPALIALHSLLGRIMKNQ 337 (703)
T ss_dssp SCHHHHHHHHHHHH--H--TTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC-----CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--H--cCCCCceEEEECChhhCccccccCCCCEEEeCCCcccccc--chhHHHHHHHHHHHHHHhh
Confidence 999999 888988 3 4554 48899999876655531 1221 11111 1111 1112222334566777777
Q ss_pred cCCcEEEEEeC
Q psy7769 270 KVGGSVVYSTC 280 (355)
Q Consensus 270 kpGG~lVYsTC 280 (355)
.|||+++.-|-
T Consensus 338 ~~g~~~~ilt~ 348 (703)
T 3v97_A 338 FGGWNLSLFSA 348 (703)
T ss_dssp CTTCEEEEEES
T ss_pred CCCCeEEEEeC
Confidence 79998887653
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.62 E-value=5.1e-05 Score=71.70 Aligned_cols=39 Identities=15% Similarity=0.127 Sum_probs=32.3
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchh
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLP 202 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~R 202 (355)
++++.+|||+||||||++..++...+...|+++|+....
T Consensus 88 Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~ 126 (282)
T 3gcz_A 88 VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQG 126 (282)
T ss_dssp CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTT
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCc
Confidence 578999999999999999888865544678999998653
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.59 E-value=2e-05 Score=81.16 Aligned_cols=145 Identities=14% Similarity=0.062 Sum_probs=87.2
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC---------------CCcEEEEcCCchhh--HHhhccc
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY---------------PDYYCMDGASLLPV--LALNIRP 210 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~---------------~g~V~AvD~s~~Rl--l~~~l~r 210 (355)
||--..-+.+.+.++.+++| +|||.|||+|+..+.++..+. ...++++|+++..+ ++.|+.
T Consensus 227 fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~- 304 (544)
T 3khk_A 227 YYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMV- 304 (544)
T ss_dssp TCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHH-
T ss_pred EeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHH-
Confidence 55555556777788888888 999999999999887765321 35799999999988 555553
Q ss_pred cccccCc-ceEEEEE-------------ecceeeecccCCCCCccCC--c-cccchHH-------HHhhhhHH-HHHHHH
Q psy7769 211 YDTVLDI-HALKLVK-------------VGGSVVYSTCSLSPIQNDG--V-VHMSLKR-------IWEETGCE-IEIKHA 265 (355)
Q Consensus 211 ~~~~~g~-~~v~~~~-------------~Da~~lDaPCSgsG~t~~~--~-l~~~~~~-------l~~l~~lQ-~lL~~A 265 (355)
. .|. .++.+.+ +|.....||-+........ . .+|.... +......+ ..+.++
T Consensus 305 -l--~gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~ 381 (544)
T 3khk_A 305 -I--RGIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHM 381 (544)
T ss_dssp -H--TTCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHH
T ss_pred -H--hCCCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHH
Confidence 1 122 1121122 3444577887543211000 0 1121000 11111223 579999
Q ss_pred HhhccCCcEEEEEeCC--CCCC-CCHHHHHHHHHh
Q psy7769 266 LKLVKVGGSVVYSTCS--LSPI-QNDGVVHMSLKR 297 (355)
Q Consensus 266 ~~~LkpGG~lVYsTCS--l~~~-ENE~vV~~~L~~ 297 (355)
++.|+|||++++.+-. ++.. -.+..+++.|-+
T Consensus 382 l~~Lk~gGr~aiVlP~g~L~~~~~~~~~iRk~Lle 416 (544)
T 3khk_A 382 LYHLAPTGSMALLLANGSMSSNTNNEGEIRKTLVE 416 (544)
T ss_dssp HHTEEEEEEEEEEEETHHHHCCGGGHHHHHHHHHH
T ss_pred HHHhccCceEEEEecchhhhcCcchHHHHHHHHHh
Confidence 9999999998887642 3332 256677777654
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00012 Score=71.77 Aligned_cols=57 Identities=16% Similarity=0.141 Sum_probs=42.8
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhhHHhhccccccccCcceEEEEEecceeee
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKVGGSVVY 231 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rll~~~l~r~~~~~g~~~v~~~~~Da~~lD 231 (355)
+++|++|||+||+|||+|..+++.. ++|+|+|..+ +...+. ..++|+++..|+...+
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg--~~V~aVD~~~---l~~~l~------~~~~V~~~~~d~~~~~ 265 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRN--MWVYSVDNGP---MAQSLM------DTGQVTWLREDGFKFR 265 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTT--CEEEEECSSC---CCHHHH------TTTCEEEECSCTTTCC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCC--CEEEEEEhhh---cChhhc------cCCCeEEEeCcccccc
Confidence 6799999999999999999998875 8999999764 112221 2246788888876533
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=6.8e-05 Score=70.04 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=29.3
Q ss_pred CCCCCeEeeecccCcchHHHHHHh--cC--CCcEEEEcC
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQT--LY--PDYYCMDGA 198 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~--~~--~g~V~AvD~ 198 (355)
++||++|||+||||||++..+++. .. .|.|+|+|.
T Consensus 71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~ 109 (269)
T 2px2_A 71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG 109 (269)
T ss_dssp CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT
T ss_pred CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc
Confidence 689999999999999999998887 42 367788884
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00017 Score=69.17 Aligned_cols=104 Identities=13% Similarity=0.044 Sum_probs=69.1
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhhHHhhccccccccCcceEEEEEecceeeecccCCCCCccC
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQND 242 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rll~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~ 242 (355)
+..++.+|||+|||+|..+..+++..+..+++++|+ +..+ +..+ . ..++.+..+|... +.|- .-+..-
T Consensus 185 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~--~~a~--~----~~~v~~~~~d~~~-~~p~--~D~v~~ 252 (352)
T 1fp2_A 185 VFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVV--ENLS--G----SNNLTYVGGDMFT-SIPN--ADAVLL 252 (352)
T ss_dssp HHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH--TTCC--C----BTTEEEEECCTTT-CCCC--CSEEEE
T ss_pred ccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHH--hhcc--c----CCCcEEEeccccC-CCCC--ccEEEe
Confidence 345778999999999999999998876678999999 7766 1122 1 1247888888743 2220 100001
Q ss_pred Cc-cc-cchHHHHhhhhHHHHHHHHHhhccC---CcEEEEEeCCCCC
Q psy7769 243 GV-VH-MSLKRIWEETGCEIEIKHALKLVKV---GGSVVYSTCSLSP 284 (355)
Q Consensus 243 ~~-l~-~~~~~l~~l~~lQ~lL~~A~~~Lkp---GG~lVYsTCSl~~ 284 (355)
.. ++ |.... ..++|+++.+.||| ||+|+.+......
T Consensus 253 ~~~lh~~~d~~------~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~ 293 (352)
T 1fp2_A 253 KYILHNWTDKD------CLRILKKCKEAVTNDGKRGKVTIIDMVIDK 293 (352)
T ss_dssp ESCGGGSCHHH------HHHHHHHHHHHHSGGGCCCEEEEEECEECT
T ss_pred ehhhccCCHHH------HHHHHHHHHHhCCCCCCCcEEEEEEeecCC
Confidence 11 22 43221 11789999999999 9999998776543
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00014 Score=68.94 Aligned_cols=49 Identities=14% Similarity=0.036 Sum_probs=43.1
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
++..|++++|+.+||+++|.||.|..|++. .|+|+|+|.++..+ +++ +.
T Consensus 14 ~le~L~~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~ 64 (285)
T 1wg8_A 14 ALDLLAVRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LH 64 (285)
T ss_dssp HHHHHTCCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TC
T ss_pred HHHhhCCCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hc
Confidence 456778999999999999999999999987 58999999999999 555 54
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.40 E-value=9.9e-05 Score=68.97 Aligned_cols=73 Identities=15% Similarity=0.052 Sum_probs=53.5
Q ss_pred cHHHHHhhCCCCC--CeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccc---cccC-c-ceEEEEEe
Q psy7769 155 SLLPVLALNIRPY--DTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYD---TVLD-I-HALKLVKV 225 (355)
Q Consensus 155 S~l~~~~L~~~pG--~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~---~~~g-~-~~v~~~~~ 225 (355)
......++.+++| ++|||++||.|.-++.+|... ++|+++|+++..+ +++++++++ ...+ . .+++++++
T Consensus 75 ~e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g--~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~ 152 (258)
T 2oyr_A 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (258)
T ss_dssp GSHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHT--CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEES
T ss_pred HHHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEEC
Confidence 4455667777788 999999999999999999874 6899999999876 555554221 0012 3 46888887
Q ss_pred ccee
Q psy7769 226 GGSV 229 (355)
Q Consensus 226 Da~~ 229 (355)
|+..
T Consensus 153 D~~~ 156 (258)
T 2oyr_A 153 SSLT 156 (258)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7643
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0011 Score=70.97 Aligned_cols=132 Identities=14% Similarity=0.068 Sum_probs=75.5
Q ss_pred CCCCeEeeecccCcchHHHHHHhcC---CCcEEEEcCCchhh--H--HhhccccccccCcceEEEEEe------------
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLY---PDYYCMDGASLLPV--L--ALNIRPYDTVLDIHALKLVKV------------ 225 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~---~g~V~AvD~s~~Rl--l--~~~l~r~~~~~g~~~v~~~~~------------ 225 (355)
.++.+|||.|||+|+..+.++..+. +..++|+|+++..+ + +.|+.......+.....+...
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 4689999999999999999988653 36899999999988 4 444431001122222223222
Q ss_pred -cceeeecccCCCCCccCCccccchHHHH-----------hhhhHH-HHHHHHHhhccCCcEEEEEeCC-CCCCC--CHH
Q psy7769 226 -GGSVVYSTCSLSPIQNDGVVHMSLKRIW-----------EETGCE-IEIKHALKLVKVGGSVVYSTCS-LSPIQ--NDG 289 (355)
Q Consensus 226 -Da~~lDaPCSgsG~t~~~~l~~~~~~l~-----------~l~~lQ-~lL~~A~~~LkpGG~lVYsTCS-l~~~E--NE~ 289 (355)
|....+||-++.. .......-...++. ....+. ..+.+++++|++||++++.+-. +.... ...
T Consensus 400 FDVVIgNPPYg~~~-~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg~~~k 478 (878)
T 3s1s_A 400 VSVVVMNPPYVSGV-TDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYLTAQGNESK 478 (878)
T ss_dssp EEEEEECCBCCSSC-CCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHHHCCSHHHH
T ss_pred CCEEEECCCccccc-cchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHhccCChHHH
Confidence 2233666763321 00000000000011 011344 7899999999999999987654 32222 255
Q ss_pred HHHHHHHh
Q psy7769 290 VVHMSLKR 297 (355)
Q Consensus 290 vV~~~L~~ 297 (355)
-++++|-+
T Consensus 479 kLRk~LLe 486 (878)
T 3s1s_A 479 AFREFLVG 486 (878)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 66666643
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00073 Score=64.95 Aligned_cols=102 Identities=14% Similarity=0.052 Sum_probs=67.8
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhhHHhhccccccccCcceEEEEEecceeeecccCCCCCccCC
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDG 243 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rll~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~~ 243 (355)
..++.+|||+|||+|..+..+++..+..+++++|+ +..+ ...+ . ..++.+..+|... +.| + .-+..-.
T Consensus 191 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~--~~a~--~----~~~v~~~~~d~~~-~~~-~-~D~v~~~ 258 (358)
T 1zg3_A 191 FEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVV--GNLT--G----NENLNFVGGDMFK-SIP-S-ADAVLLK 258 (358)
T ss_dssp HHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHH--SSCC--C----CSSEEEEECCTTT-CCC-C-CSEEEEE
T ss_pred ccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHH--hhcc--c----CCCcEEEeCccCC-CCC-C-ceEEEEc
Confidence 34678999999999999999999876678999998 5554 1122 1 1347888888754 323 1 1100111
Q ss_pred c-cc-cchHHHHhhhhHHHHHHHHHhhccC---CcEEEEEeCCCC
Q psy7769 244 V-VH-MSLKRIWEETGCEIEIKHALKLVKV---GGSVVYSTCSLS 283 (355)
Q Consensus 244 ~-l~-~~~~~l~~l~~lQ~lL~~A~~~Lkp---GG~lVYsTCSl~ 283 (355)
+ ++ |.... ..++|+++.+.||| ||+|+.....+.
T Consensus 259 ~vlh~~~d~~------~~~~l~~~~~~L~p~~~gG~l~i~e~~~~ 297 (358)
T 1zg3_A 259 WVLHDWNDEQ------SLKILKNSKEAISHKGKDGKVIIIDISID 297 (358)
T ss_dssp SCGGGSCHHH------HHHHHHHHHHHTGGGGGGCEEEEEECEEC
T ss_pred ccccCCCHHH------HHHHHHHHHHhCCCCCCCcEEEEEEeccC
Confidence 1 22 33221 11789999999999 999998877654
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00011 Score=62.87 Aligned_cols=83 Identities=10% Similarity=-0.076 Sum_probs=53.8
Q ss_pred hhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceee--------
Q psy7769 161 ALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVV-------- 230 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~l-------- 230 (355)
-+++++|++|||+++|. +++|+++.++ ++++.. . ++.+...|...+
T Consensus 7 ~~g~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~--~------~~~~~~~d~~~~~~~~~~~~ 62 (176)
T 2ld4_A 7 DFGISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTG--N------EGRVSVENIKQLLQSAHKES 62 (176)
T ss_dssp TTTCCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTT--T------TSEEEEEEGGGGGGGCCCSS
T ss_pred ccCCCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcc--c------CcEEEEechhcCccccCCCC
Confidence 34678999999999875 2389999988 665554 1 246666666432
Q ss_pred --ecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 231 --YSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 231 --DaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
|.-.+... ++|-. ...+++|+++.+.|||||+++.+.
T Consensus 63 ~fD~V~~~~~------l~~~~------~~~~~~l~~~~r~LkpgG~l~~~~ 101 (176)
T 2ld4_A 63 SFDIILSGLV------PGSTT------LHSAEILAEIARILRPGGCLFLKE 101 (176)
T ss_dssp CEEEEEECCS------TTCCC------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CEeEEEECCh------hhhcc------cCHHHHHHHHHHHCCCCEEEEEEc
Confidence 22221111 12210 122378999999999999999864
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0012 Score=61.52 Aligned_cols=130 Identities=14% Similarity=0.029 Sum_probs=73.3
Q ss_pred CCCCCeEeeecccCcchHHHHHHhc------CC------CcEEEEcCCc---hhh-------------HHhhcccc----
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTL------YP------DYYCMDGASL---LPV-------------LALNIRPY---- 211 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~------~~------g~V~AvD~s~---~Rl-------------l~~~l~r~---- 211 (355)
.+++.+|||+|.|.|.-++.+++.. ++ .+++++|..+ .++ ++.+++..
T Consensus 58 ~~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~ 137 (257)
T 2qy6_A 58 PHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPL 137 (257)
T ss_dssp SSSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSC
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccc
Confidence 4566799999999999998877643 22 4799999987 222 22232210
Q ss_pred ------ccccCcceEEEEEecceeeecccCCCCCccCCc---cc-cchHHHHhhhhH-H-HHHHHHHhhccCCcEEEEEe
Q psy7769 212 ------DTVLDIHALKLVKVGGSVVYSTCSLSPIQNDGV---VH-MSLKRIWEETGC-E-IEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 212 ------~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~~~---l~-~~~~~l~~l~~l-Q-~lL~~A~~~LkpGG~lVYsT 279 (355)
.+..+..++++..+|+..+-+-..+.+ ...-+ +. |.+.+. ..+ + ++|..+.++|+|||+|+.-|
T Consensus 138 ~g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~-~~~~D~iflD~fsp~~~---p~lw~~~~l~~l~~~L~pGG~l~tys 213 (257)
T 2qy6_A 138 PGCHRLLLDEGRVTLDLWFGDINELISQLDDSL-NQKVDAWFLDGFAPAKN---PDMWTQNLFNAMARLARPGGTLATFT 213 (257)
T ss_dssp SEEEEEEEC--CEEEEEEESCHHHHGGGSCGGG-TTCEEEEEECSSCTTTC---GGGCCHHHHHHHHHHEEEEEEEEESC
T ss_pred cchhheeccCCceEEEEEECcHHHHHhhccccc-CCeEEEEEECCCCcccC---hhhcCHHHHHHHHHHcCCCcEEEEEe
Confidence 000122456778888754211110000 00011 11 333221 122 1 78999999999999998433
Q ss_pred CCCCCCCCHHHHHHHHHhhhhccCceEEE
Q psy7769 280 CSLSPIQNDGVVHMSLKRIWEETGCEIEI 308 (355)
Q Consensus 280 CSl~~~ENE~vV~~~L~~~~~~~~~~~~~ 308 (355)
++ .+|.+.|.. .|+.++.
T Consensus 214 aa-------~~vrr~L~~----aGF~v~~ 231 (257)
T 2qy6_A 214 SA-------GFVRRGLQE----AGFTMQK 231 (257)
T ss_dssp CB-------HHHHHHHHH----HTEEEEE
T ss_pred CC-------HHHHHHHHH----CCCEEEe
Confidence 32 478888875 3655543
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00067 Score=63.09 Aligned_cols=104 Identities=12% Similarity=-0.113 Sum_probs=63.1
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccC
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQND 242 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~ 242 (355)
.+..+|||++||.|-.+..++ ...+++|+|+++.++ +++++. . .+ .+..+...|.....+|- ..+
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~--~--~g-~~~~~~v~D~~~~~~~~-----~~D 170 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAR--E--KD-WDFTFALQDVLCAPPAE-----AGD 170 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHH--H--TT-CEEEEEECCTTTSCCCC-----BCS
T ss_pred CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHH--h--cC-CCceEEEeecccCCCCC-----Ccc
Confidence 457799999999998887665 568999999999999 888876 2 23 45677777765433332 111
Q ss_pred CccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEE-eCCCC
Q psy7769 243 GVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYS-TCSLS 283 (355)
Q Consensus 243 ~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYs-TCSl~ 283 (355)
--+.+. -+..+...+ ..+.+.+..|+++|.+|-. |-|+.
T Consensus 171 vvLllk--~lh~LE~q~~~~~~~ll~aL~~~~vvVsfPtksl~ 211 (253)
T 3frh_A 171 LALIFK--LLPLLEREQAGSAMALLQSLNTPRMAVSFPTRSLG 211 (253)
T ss_dssp EEEEES--CHHHHHHHSTTHHHHHHHHCBCSEEEEEEECC---
T ss_pred hHHHHH--HHHHhhhhchhhHHHHHHHhcCCCEEEEcChHHhc
Confidence 111111 112222223 3333788899998666633 55664
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.001 Score=61.51 Aligned_cols=125 Identities=11% Similarity=-0.034 Sum_probs=71.2
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh-HHhhccccccccCcceEEEEEe-ccee-----eecccC
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV-LALNIRPYDTVLDIHALKLVKV-GGSV-----VYSTCS 235 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl-l~~~l~r~~~~~g~~~v~~~~~-Da~~-----lDaPCS 235 (355)
.++||+.|||++|||||++..++...+..+|+|+|+-..-. --..++ . .|.+.|++... |... +|.--|
T Consensus 75 ~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~--s--~gwn~v~fk~gvDv~~~~~~~~Dtllc 150 (267)
T 3p8z_A 75 MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMS--T--YGWNIVKLMSGKDVFYLPPEKCDTLLC 150 (267)
T ss_dssp SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCC--C--TTTTSEEEECSCCGGGCCCCCCSEEEE
T ss_pred CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhh--h--cCcCceEEEeccceeecCCccccEEEE
Confidence 46799999999999999998888765556899999986544 112233 2 35566788776 7321 333222
Q ss_pred CCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhhhhccC
Q psy7769 236 LSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETG 303 (355)
Q Consensus 236 gsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~~~~~~ 303 (355)
-.|- ..+. +. +.+ ..--+.|+-|-++|++ |.++. =+..-+.++|+ .+|++....++
T Consensus 151 DIge-Ss~~----~~-vE~-~RtlrvLela~~wL~~-~~fc~---KVl~py~p~v~-e~l~~lq~~fg 206 (267)
T 3p8z_A 151 DIGE-SSPS----PT-VEE-SRTIRVLKMVEPWLKN-NQFCI---KVLNPYMPTVI-EHLERLQRKHG 206 (267)
T ss_dssp CCCC-CCSC----HH-HHH-HHHHHHHHHHGGGCSS-CEEEE---EESCCCSHHHH-HHHHHHHHHHC
T ss_pred ecCC-CCCC----hh-hhh-hHHHHHHHHHHHhccc-CCEEE---EEccCCChhHH-HHHHHHHHHhC
Confidence 2231 1110 11 111 0000578888899998 54443 33333455555 44544332344
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0005 Score=64.69 Aligned_cols=106 Identities=13% Similarity=-0.009 Sum_probs=65.5
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccC
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQND 242 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~ 242 (355)
.+-.+|||++||.|-.++.++...+..+++|+|+++.++ ++.|+. . .|.. ..+...|- +|...+ ..
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~--~--~g~~-~~~~v~D~-----~~~~p~--~~ 198 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALT--R--LNVP-HRTNVADL-----LEDRLD--EP 198 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHH--H--TTCC-EEEEECCT-----TTSCCC--SC
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHH--h--cCCC-ceEEEeee-----cccCCC--CC
Confidence 335699999999999998887766668999999999999 888887 3 3443 45555554 332211 11
Q ss_pred CccccchHHHHhhhhHH--HHHHHHHhhccCCcEEEEE-eCCCC
Q psy7769 243 GVVHMSLKRIWEETGCE--IEIKHALKLVKVGGSVVYS-TCSLS 283 (355)
Q Consensus 243 ~~l~~~~~~l~~l~~lQ--~lL~~A~~~LkpGG~lVYs-TCSl~ 283 (355)
.++.....-+..+...| .++ ..+..|++||.+|-- |-|+.
T Consensus 199 ~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~ 241 (281)
T 3lcv_B 199 ADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPTKSLG 241 (281)
T ss_dssp CSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEECC---
T ss_pred cchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccchhhc
Confidence 22111111122222222 455 899999998877733 55553
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0016 Score=66.66 Aligned_cols=141 Identities=13% Similarity=0.114 Sum_probs=83.2
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-------------CCcEEEEcCCchhh--HHhhccccc
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-------------PDYYCMDGASLLPV--LALNIRPYD 212 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-------------~g~V~AvD~s~~Rl--l~~~l~r~~ 212 (355)
||-=..-+.+.+.+++|++|++|+|-|||+||..+.+...+. ...++++|+++... ++-|+- -
T Consensus 199 fyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~--l 276 (530)
T 3ufb_A 199 FYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLL--L 276 (530)
T ss_dssp CCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHH--H
T ss_pred ECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHH--h
Confidence 554445566778889999999999999999999887765321 24699999999887 444443 1
Q ss_pred cccCcceEEEEE----------------ecceeeecccCCCCCccCCc-c-ccchHHHHhhhhHH-HHHHHHHhhcc---
Q psy7769 213 TVLDIHALKLVK----------------VGGSVVYSTCSLSPIQNDGV-V-HMSLKRIWEETGCE-IEIKHALKLVK--- 270 (355)
Q Consensus 213 ~~~g~~~v~~~~----------------~Da~~lDaPCSgsG~t~~~~-l-~~~~~~l~~l~~lQ-~lL~~A~~~Lk--- 270 (355)
.|.....+.. +|...-.||.++.. ... . ++.. .......+ -.+.++++.||
T Consensus 277 --hg~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~---~~~~~~~~~~--~~~~~~~~~~Fl~~~l~~Lk~~~ 349 (530)
T 3ufb_A 277 --HGLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEE---EKGILGNFPE--DMQTAETAMLFLQLIMRKLKRPG 349 (530)
T ss_dssp --HTCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBC---CHHHHTTSCG--GGCCCBHHHHHHHHHHHHBCCTT
T ss_pred --cCCccccccccccccCchhhhcccccceEEEecCCCCccc---cccccccCch--hcccchhHHHHHHHHHHHhhhhh
Confidence 2322112222 34444677774321 111 0 0100 00112223 44667777776
Q ss_pred ----CCcEEEEEeC--CCCCCCCHHHHHHHHHh
Q psy7769 271 ----VGGSVVYSTC--SLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 271 ----pGG~lVYsTC--Sl~~~ENE~vV~~~L~~ 297 (355)
+||++++.+- .++..-.+.-+++.|-+
T Consensus 350 ~~l~~gGr~avVlP~g~Lf~~~~~~~iRk~Lle 382 (530)
T 3ufb_A 350 HGSDNGGRAAVVVPNGTLFSDGISARIKEELLK 382 (530)
T ss_dssp SSSSSCCEEEEEEEHHHHHCCTHHHHHHHHHHH
T ss_pred hccCCCceEEEEecchhhhccchHHHHHHHHhh
Confidence 7999988765 34433335567666654
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0017 Score=61.72 Aligned_cols=39 Identities=13% Similarity=0.002 Sum_probs=33.0
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCch
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLL 201 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~ 201 (355)
.+++|+.|||++|||||++..++...+..+|+|+|+-..
T Consensus 91 ~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~ 129 (321)
T 3lkz_A 91 FLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGP 129 (321)
T ss_dssp SCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCST
T ss_pred CCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCC
Confidence 467899999999999999987776654468999999876
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0056 Score=55.09 Aligned_cols=118 Identities=11% Similarity=-0.080 Sum_probs=73.7
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccC---cceEEEEEecceeee---cccCC
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLD---IHALKLVKVGGSVVY---STCSL 236 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g---~~~v~~~~~Da~~lD---aPCSg 236 (355)
+...+||++++ |+-|+.+|++. .|+|+++|.++.+. ++++++ + .| ..+|.++.+|+.... .|-+.
T Consensus 29 ~~a~~VLEiGt--GySTl~lA~~~-~g~VvtvE~d~~~~~~ar~~l~--~--~g~~~~~~I~~~~gda~~~~~wg~p~~~ 101 (202)
T 3cvo_A 29 EEAEVILEYGS--GGSTVVAAELP-GKHVTSVESDRAWARMMKAWLA--A--NPPAEGTEVNIVWTDIGPTGDWGHPVSD 101 (202)
T ss_dssp HHCSEEEEESC--SHHHHHHHTST-TCEEEEEESCHHHHHHHHHHHH--H--SCCCTTCEEEEEECCCSSBCGGGCBSSS
T ss_pred hCCCEEEEECc--hHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHH--H--cCCCCCCceEEEEeCchhhhcccccccc
Confidence 45679999997 67777777743 59999999999999 888898 3 34 467899988864321 11111
Q ss_pred CCC---------------ccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHH
Q psy7769 237 SPI---------------QNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLK 296 (355)
Q Consensus 237 sG~---------------t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~ 296 (355)
++. ...-++.+-..+ ..+.-+..++++|+|||+||.=..+.. .....|..|++
T Consensus 102 ~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~-----k~~~~~~~~l~~l~~GG~Iv~DNv~~r--~~y~~v~~~~~ 169 (202)
T 3cvo_A 102 AKWRSYPDYPLAVWRTEGFRHPDVVLVDGR-----FRVGCALATAFSITRPVTLLFDDYSQR--RWQHQVEEFLG 169 (202)
T ss_dssp TTGGGTTHHHHGGGGCTTCCCCSEEEECSS-----SHHHHHHHHHHHCSSCEEEEETTGGGC--SSGGGGHHHHC
T ss_pred hhhhhHHHHhhhhhccccCCCCCEEEEeCC-----CchhHHHHHHHhcCCCeEEEEeCCcCC--cchHHHHHHHh
Confidence 100 000111110000 011446668899999999987554433 44567788876
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0014 Score=68.65 Aligned_cols=116 Identities=11% Similarity=-0.055 Sum_probs=73.1
Q ss_pred CCeEeeecccCcchH---HHHHHhcCC-CcEEEEcCCchhh-HHhhccccccccCcceEEEEEecceeeecccCCCCCcc
Q psy7769 167 YDTVLDMCAAPGGKT---LVALQTLYP-DYYCMDGASLLPV-LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQN 241 (355)
Q Consensus 167 G~~VLD~CAgPGgKT---~~la~~~~~-g~V~AvD~s~~Rl-l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~ 241 (355)
+..|||+|||.|-.. +.+++.... .+|+|+|.++... +++..+ ...++ +.|+++++|.+.++.|.-
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~--~N~~~-dkVtVI~gd~eev~LPEK------ 428 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQ--FEEWG-SQVTVVSSDMREWVAPEK------ 428 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHH--HHTTG-GGEEEEESCTTTCCCSSC------
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHH--hccCC-CeEEEEeCcceeccCCcc------
Confidence 347999999999884 444444322 3799999998766 555555 21122 569999999988777641
Q ss_pred CCccc---cc-hHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC--CCCCHHHHHHH
Q psy7769 242 DGVVH---MS-LKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS--PIQNDGVVHMS 294 (355)
Q Consensus 242 ~~~l~---~~-~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~--~~ENE~vV~~~ 294 (355)
-++. |- ---+.+.. + ++|.++-++|||||.++=+.|+++ |.+.+..-+..
T Consensus 429 -VDIIVSEwMG~fLl~E~m-l-evL~Ardr~LKPgGimiPs~atlyiapi~~~~l~~e~ 484 (637)
T 4gqb_A 429 -ADIIVSELLGSFADNELS-P-ECLDGAQHFLKDDGVSIPGEYTSFLAPISSSKLYNEV 484 (637)
T ss_dssp -EEEEECCCCBTTBGGGCH-H-HHHHHHGGGEEEEEEEESCEEEEEEEEEECHHHHHHH
T ss_pred -cCEEEEEcCcccccccCC-H-HHHHHHHHhcCCCcEEccccceEEEEEecCHHHHHHH
Confidence 1111 11 00112211 1 678899999999999995555543 56766654443
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0042 Score=63.85 Aligned_cols=59 Identities=12% Similarity=-0.181 Sum_probs=46.7
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV 229 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~ 229 (355)
..+-+|||+|||.|..+..||+.+ +.|+++|.++..+ ++.... . .+..++.+.+.|+..
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~g--a~V~giD~~~~~i~~a~~~a~--~--~~~~~~~~~~~~~~~ 125 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASKG--ATIVGIDFQQENINVCRALAE--E--NPDFAAEFRVGRIEE 125 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHH--T--STTSEEEEEECCHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHhCC--CEEEEECCCHHHHHHHHHHHH--h--cCCCceEEEECCHHH
Confidence 345799999999999999999986 7899999999999 555554 2 243468888877643
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0077 Score=56.62 Aligned_cols=43 Identities=16% Similarity=-0.127 Sum_probs=37.3
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
.+|+.|||.+||+|..+..++.++ .+++++|+++..+ ++++++
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~g--~~~~g~e~~~~~~~~a~~r~~ 278 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARWG--RRALGVELVPRYAQLAKERFA 278 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHH
Confidence 689999999999999877776654 6899999999999 777776
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.011 Score=56.43 Aligned_cols=44 Identities=23% Similarity=0.098 Sum_probs=32.2
Q ss_pred cHHHHHh----hCCCCCCeEeeecc------cCcchHHHHHHhcCC-CcEEEEcCCc
Q psy7769 155 SLLPVLA----LNIRPYDTVLDMCA------APGGKTLVALQTLYP-DYYCMDGASL 200 (355)
Q Consensus 155 S~l~~~~----L~~~pG~~VLD~CA------gPGgKT~~la~~~~~-g~V~AvD~s~ 200 (355)
.||.-++ |.+.-|++|||++| |||+ ..+.+.++. +.|+++|+.+
T Consensus 94 tqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~ 148 (344)
T 3r24_A 94 TQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLND 148 (344)
T ss_dssp HHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSC
T ss_pred HHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCcc
Confidence 4555444 23557999999997 9999 345556655 5999999987
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.01 Score=57.72 Aligned_cols=77 Identities=14% Similarity=0.070 Sum_probs=57.6
Q ss_pred EEEechhc-HHHHHhhCCC------CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcc
Q psy7769 148 YYCMDGAS-LLPVLALNIR------PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIH 218 (355)
Q Consensus 148 ~~~QD~aS-~l~~~~L~~~------pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~ 218 (355)
-|+.|+.- .-++..++++ +++.||+++.|+|..|..|++.....+|+|+|+++..+ |++.+. .+
T Consensus 33 nFL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~-------~~ 105 (353)
T 1i4w_A 33 KYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE-------GS 105 (353)
T ss_dssp CCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT-------TS
T ss_pred CccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhcc-------CC
Confidence 35566553 3445566665 46999999999999999999875557899999999876 665542 14
Q ss_pred eEEEEEecceeee
Q psy7769 219 ALKLVKVGGSVVY 231 (355)
Q Consensus 219 ~v~~~~~Da~~lD 231 (355)
+++++.+|+..+|
T Consensus 106 ~l~ii~~D~l~~~ 118 (353)
T 1i4w_A 106 PLQILKRDPYDWS 118 (353)
T ss_dssp SCEEECSCTTCHH
T ss_pred CEEEEECCccchh
Confidence 6899999996655
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0043 Score=65.43 Aligned_cols=120 Identities=5% Similarity=-0.080 Sum_probs=72.8
Q ss_pred CeEeeecccCcchHHHH---HH-hc---------CCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeee
Q psy7769 168 DTVLDMCAAPGGKTLVA---LQ-TL---------YPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVY 231 (355)
Q Consensus 168 ~~VLD~CAgPGgKT~~l---a~-~~---------~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lD 231 (355)
-.|||+|||.|-.+..+ ++ .. ...+|+|+|.++... ++.+.. .+. ..|+++.+|.+.+.
T Consensus 411 ~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-----Ng~~d~VtVI~gd~eev~ 485 (745)
T 3ua3_A 411 VVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-----RTWKRRVTIIESDMRSLP 485 (745)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-----HTTTTCSEEEESCGGGHH
T ss_pred cEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-----cCCCCeEEEEeCchhhcc
Confidence 47999999999997432 22 11 124999999998766 444333 122 34899999998876
Q ss_pred cccCCCCCccCCccc---cchHHHHhhhhHH-HHHHHHHhhccCCcEEEEE--eCCCCCCCCHHHHHHHH
Q psy7769 232 STCSLSPIQNDGVVH---MSLKRIWEETGCE-IEIKHALKLVKVGGSVVYS--TCSLSPIQNDGVVHMSL 295 (355)
Q Consensus 232 aPCSgsG~t~~~~l~---~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYs--TCSl~~~ENE~vV~~~L 295 (355)
.|-...| ...-++. |--. .-..++. ++|..+-++|||||.++=+ |..+.|.+.+..-+.+.
T Consensus 486 lp~~~~~-~ekVDIIVSElmGs--fl~nEL~pe~Ld~v~r~Lkp~Gi~iP~~~t~ylaPi~~~~l~~~v~ 552 (745)
T 3ua3_A 486 GIAKDRG-FEQPDIIVSELLGS--FGDNELSPECLDGVTGFLKPTTISIPQKYTSYVKPIMSTHIHQTIK 552 (745)
T ss_dssp HHHHHTT-CCCCSEEEECCCBT--TBGGGSHHHHHHTTGGGSCTTCEEESCEEEEEEEEEECHHHHHHHH
T ss_pred cccccCC-CCcccEEEEecccc--ccchhccHHHHHHHHHhCCCCcEEECCccEEEEEEecCHHHHHHHH
Confidence 6421101 0111111 2110 0011234 7899999999999999944 44455677776655443
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.065 Score=50.80 Aligned_cols=123 Identities=13% Similarity=-0.057 Sum_probs=76.1
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcccc-ccccCcceEEEEEeccee-----
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPY-DTVLDIHALKLVKVGGSV----- 229 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~-~~~~g~~~v~~~~~Da~~----- 229 (355)
+++++.+.| .+||=+|.|-|+.+-.++...+-.+|+.+|+++.-+ .++.+... ......++++++..||..
T Consensus 76 ~~l~~~p~p-k~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~ 154 (294)
T 3o4f_A 76 VPLLAHGHA-KHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQT 154 (294)
T ss_dssp HHHHHSSCC-CEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCS
T ss_pred HHHhhCCCC-CeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhc
Confidence 345556665 499999999999888887654446899999999888 55444210 000233678999888864
Q ss_pred --------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 230 --------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 230 --------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
+|.+-. .|. . .-.++. +.++.+.+.|+|||.+|.-+-|.. -+...+...++.
T Consensus 155 ~~~yDvIi~D~~dp-~~~-~--~~L~t~----------eFy~~~~~~L~p~Gv~v~q~~sp~--~~~~~~~~~~~~ 214 (294)
T 3o4f_A 155 SQTFDVIISDCTDP-IGP-G--ESLFTS----------AFYEGCKRCLNPGGIFVAQNGVCF--LQQEEAIDSHRK 214 (294)
T ss_dssp SCCEEEEEESCCCC-CCT-T--CCSSCC----------HHHHHHHHTEEEEEEEEEEEEESS--SCCHHHHHHHHH
T ss_pred cccCCEEEEeCCCc-CCC-c--hhhcCH----------HHHHHHHHHhCCCCEEEEecCCcc--cChHHHHHHHHH
Confidence 554431 110 0 000111 678889999999999997533322 233344444443
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.038 Score=52.06 Aligned_cols=104 Identities=13% Similarity=0.111 Sum_probs=66.6
Q ss_pred CCCeEeeecccCcchHHHHHHhc-----CCCcEEEEcCCch--------------------------hh--HHhhccccc
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTL-----YPDYYCMDGASLL--------------------------PV--LALNIRPYD 212 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~-----~~g~V~AvD~s~~--------------------------Rl--l~~~l~r~~ 212 (355)
|| .||+++++.|+-++.++..+ ..++|+++|.... ++ +++|++ +
T Consensus 107 pg-~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~--~ 183 (282)
T 2wk1_A 107 PG-DLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFR--N 183 (282)
T ss_dssp CC-EEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHH--H
T ss_pred CC-cEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHH--H
Confidence 55 99999999999999988765 2588999996421 33 677887 3
Q ss_pred cccCc--ceEEEEEecceeeecccCCCCCccCCc-cccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 213 TVLDI--HALKLVKVGGSVVYSTCSLSPIQNDGV-VHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 213 ~~~g~--~~v~~~~~Da~~lDaPCSgsG~t~~~~-l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
.|. .+|+++.+|+...= |. -.+ ..-. +..+.+ .. ......|+.++..|+|||.||+=...
T Consensus 184 --~gl~~~~I~li~Gda~etL-~~-~~~--~~~d~vfIDaD-~y--~~~~~~Le~~~p~L~pGGiIv~DD~~ 246 (282)
T 2wk1_A 184 --YDLLDEQVRFLPGWFKDTL-PT-API--DTLAVLRMDGD-LY--ESTWDTLTNLYPKVSVGGYVIVDDYM 246 (282)
T ss_dssp --TTCCSTTEEEEESCHHHHS-TT-CCC--CCEEEEEECCC-SH--HHHHHHHHHHGGGEEEEEEEEESSCT
T ss_pred --cCCCcCceEEEEeCHHHHH-hh-CCC--CCEEEEEEcCC-cc--ccHHHHHHHHHhhcCCCEEEEEcCCC
Confidence 343 67999999885311 11 000 0011 112221 10 01116789999999999999986653
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.035 Score=54.33 Aligned_cols=43 Identities=12% Similarity=-0.006 Sum_probs=31.2
Q ss_pred CCeEeeecccCcchHHHHHHh--------c-------CCCcEEEEcCCchhh--HHhhcc
Q psy7769 167 YDTVLDMCAAPGGKTLVALQT--------L-------YPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~--------~-------~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
..+|+|+|||+|.-|+.++.. . +.-.|+.+|.-.... +-+.+.
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~ 112 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLP 112 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSC
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhh
Confidence 579999999999999987421 1 235789999888776 434443
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.052 Score=51.31 Aligned_cols=46 Identities=13% Similarity=0.059 Sum_probs=34.5
Q ss_pred hCCCCCCeEeeecccCcch-HHHHHHhcCCCcEEEEcCCchhh-HHhh
Q psy7769 162 LNIRPYDTVLDMCAAPGGK-TLVALQTLYPDYYCMDGASLLPV-LALN 207 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgK-T~~la~~~~~g~V~AvD~s~~Rl-l~~~ 207 (355)
..+++|++||=.+||++|- +.++|......+|+++|.+++|+ +.+.
T Consensus 159 ~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~ 206 (348)
T 4eez_A 159 SGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKK 206 (348)
T ss_dssp HTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHH
T ss_pred cCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhh
Confidence 4688999999999887653 44455555558999999999998 4433
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=94.72 E-value=0.031 Score=55.07 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=40.9
Q ss_pred CCCCCCeEeeecccCcchHHHHH-HhcCC-CcEEEEcCCchhh--HHhhcc
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVAL-QTLYP-DYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la-~~~~~-g~V~AvD~s~~Rl--l~~~l~ 209 (355)
.+++|+.|+|++|.-|..|..++ ....+ ++|+|+|.++... +++|++
T Consensus 223 ~l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~ 273 (409)
T 2py6_A 223 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLR 273 (409)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHH
T ss_pred ccCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHH
Confidence 46899999999999999999888 45544 8999999999988 888887
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.51 E-value=0.03 Score=51.53 Aligned_cols=44 Identities=20% Similarity=0.160 Sum_probs=36.3
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
..+|+.|||.+||+|..+..++.++ .+++++|+++..+ +++|++
T Consensus 210 ~~~~~~vlD~f~GsGtt~~~a~~~g--r~~ig~e~~~~~~~~~~~r~~ 255 (260)
T 1g60_A 210 SNPNDLVLDCFMGSGTTAIVAKKLG--RNFIGCDMNAEYVNQANFVLN 255 (260)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHHH
Confidence 3789999999999998666655553 6899999999988 777776
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=94.50 E-value=0.094 Score=49.89 Aligned_cols=44 Identities=20% Similarity=0.084 Sum_probs=32.0
Q ss_pred HhhCCCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 160 LALNIRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
...++++|++||=.+||+ |..++++|...+-.+|+++|.++.|+
T Consensus 160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~ 204 (352)
T 3fpc_A 160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCC 204 (352)
T ss_dssp HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH
Confidence 344689999999997654 44445566555434899999999988
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=94.50 E-value=0.022 Score=54.83 Aligned_cols=73 Identities=11% Similarity=0.109 Sum_probs=44.4
Q ss_pred CeEeeecccCcchHHHHHHhcCC-CcEEEEcCCchhh--HHhhccccccc-cCcceEE---EE--EecceeeecccCCCC
Q psy7769 168 DTVLDMCAAPGGKTLVALQTLYP-DYYCMDGASLLPV--LALNIRPYDTV-LDIHALK---LV--KVGGSVVYSTCSLSP 238 (355)
Q Consensus 168 ~~VLD~CAgPGgKT~~la~~~~~-g~V~AvD~s~~Rl--l~~~l~r~~~~-~g~~~v~---~~--~~Da~~lDaPCSgsG 238 (355)
.+|||++||.||.+..+...+.. ..|+|+|+++..+ .+.|....... .++..+. +. ..|....++||.++.
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~fS 82 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFT 82 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC-----
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcchh
Confidence 47999999999999988876422 3699999999999 77777521100 1111111 11 356667999998876
Q ss_pred Cc
Q psy7769 239 IQ 240 (355)
Q Consensus 239 ~t 240 (355)
..
T Consensus 83 ~a 84 (343)
T 1g55_A 83 RI 84 (343)
T ss_dssp --
T ss_pred hc
Confidence 43
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.12 E-value=0.23 Score=47.29 Aligned_cols=43 Identities=19% Similarity=0.098 Sum_probs=32.1
Q ss_pred hhCCCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 161 ALNIRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
..++++|++||-.+||+ |..++++|...+-.+|+++|.++.++
T Consensus 166 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~ 209 (356)
T 1pl8_A 166 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRL 209 (356)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH
Confidence 34789999999998754 44455666655434899999999988
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.045 Score=53.47 Aligned_cols=121 Identities=13% Similarity=0.085 Sum_probs=65.3
Q ss_pred CeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccc-cCcceEE----------EEEecceeeeccc
Q psy7769 168 DTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTV-LDIHALK----------LVKVGGSVVYSTC 234 (355)
Q Consensus 168 ~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~-~g~~~v~----------~~~~Da~~lDaPC 234 (355)
.+|||+|||.||.+..+.+.+. -.|+|+|+++..+ .+.|......+ .++..+. .-..|....++||
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~-~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpPC 81 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGF-DVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPPC 81 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTC-EEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCCC
T ss_pred CeEEEEccCcCHHHHHHHHCCC-cEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCCC
Confidence 5899999999999998877652 3578999999998 77776511100 1111110 0134555689999
Q ss_pred CCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHH
Q psy7769 235 SLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSL 295 (355)
Q Consensus 235 SgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L 295 (355)
.++...+.+. .. +- ...+-.-.-..++.++|--.|+=..--+....+..+.+.++
T Consensus 82 Q~fS~ag~~~--~~--d~--r~~L~~~~~~~v~~~~P~~~v~ENV~gl~s~~~~~~~~~i~ 136 (376)
T 3g7u_A 82 QGFSSIGKGN--PD--DS--RNQLYMHFYRLVSELQPLFFLAENVPGIMQEKYSGIRNKAF 136 (376)
T ss_dssp CTTC---------C--HH--HHHHHHHHHHHHHHHCCSEEEEEECTTTTCGGGHHHHHHHH
T ss_pred CCcccccCCC--CC--Cc--hHHHHHHHHHHHHHhCCCEEEEecchHhhccCcHHHHHHHH
Confidence 8776433321 11 11 11121112234445688533333444444445556666665
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.26 Score=48.27 Aligned_cols=107 Identities=15% Similarity=0.075 Sum_probs=64.8
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcccc-ccccC---cceEEEEEeccee----------
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPY-DTVLD---IHALKLVKVGGSV---------- 229 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~-~~~~g---~~~v~~~~~Da~~---------- 229 (355)
+..+||=+|.|-|+....+++. +..+|+.+|+++.-+ .++.+... ....+ .++++++..||..
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 4579999999999988877764 347899999999988 45544310 00011 1347787777642
Q ss_pred ------eecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEE-EeCCC
Q psy7769 230 ------VYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVY-STCSL 282 (355)
Q Consensus 230 ------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVY-sTCSl 282 (355)
+|++-...+ + .+..... .-+. +.++.+.+.|+|||.+|. +.|-.
T Consensus 284 ~yDvIIvDl~D~~~s-~-------~p~g~a~-~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~ 335 (381)
T 3c6k_A 284 EFDYVINDLTAVPIS-T-------SPEEDST-WEFLRLILDLSMKVLKQDGKYFTQGNCVN 335 (381)
T ss_dssp CEEEEEEECCSSCCC-C-------C----CH-HHHHHHHHHHHHHTEEEEEEEEEEEEETT
T ss_pred ceeEEEECCCCCccc-C-------cccCcch-HHHHHHHHHHHHHhcCCCCEEEEecCCCc
Confidence 665431111 0 0100000 1122 778999999999999986 34433
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=0.22 Score=46.92 Aligned_cols=41 Identities=10% Similarity=-0.080 Sum_probs=32.2
Q ss_pred hCCCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
..+++|++||-.+||+ |..++++|...+ .+|+++|.++.++
T Consensus 162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~Vi~~~~~~~~~ 203 (340)
T 3s2e_A 162 TDTRPGQWVVISGIGGLGHVAVQYARAMG-LRVAAVDIDDAKL 203 (340)
T ss_dssp TTCCTTSEEEEECCSTTHHHHHHHHHHTT-CEEEEEESCHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEeCCHHHH
Confidence 4678999999988765 555566666553 5999999999998
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=93.43 E-value=0.17 Score=49.69 Aligned_cols=24 Identities=4% Similarity=-0.022 Sum_probs=21.1
Q ss_pred HHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 260 IEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 260 ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
..|+.-.+-|+|||++|.++..-.
T Consensus 206 ~FL~~Ra~eL~pGG~mvl~~~gr~ 229 (384)
T 2efj_A 206 TFLRIHSEELISRGRMLLTFICKE 229 (384)
T ss_dssp HHHHHHHHHEEEEEEEEEEEECCC
T ss_pred HHHHHHHHHhccCCeEEEEEecCC
Confidence 679999999999999999987653
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=93.17 E-value=0.07 Score=51.10 Aligned_cols=122 Identities=10% Similarity=-0.014 Sum_probs=68.0
Q ss_pred CCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceE---EEEEecceeeecccCCCCCcc
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHAL---KLVKVGGSVVYSTCSLSPIQN 241 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v---~~~~~Da~~lDaPCSgsG~t~ 241 (355)
+.+|+|++||.||.+..+.+.+ -..|+|+|+++..+ .+.|..... ..++..+ .+-..|....++||.++...+
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG-~~~v~~~e~d~~a~~t~~~N~~~~~-~~Di~~~~~~~~~~~D~l~~gpPCQ~fS~ag 88 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNFGEKP-EGDITQVNEKTIPDHDILCAGFPCQAFSISG 88 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTT-CEEEEEECCCHHHHHHHHHHHSCCC-BSCGGGSCGGGSCCCSEEEEECCCTTTCTTS
T ss_pred CCcEEEECCCcCHHHHHHHHCC-CeEEEEEeCCHHHHHHHHHHcCCCC-cCCHHHcCHhhCCCCCEEEECCCCCCcchhc
Confidence 5689999999999998887764 24589999999988 777765210 0111111 011346666999998876444
Q ss_pred CCc-cccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 242 DGV-VHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 242 ~~~-l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
.+. +. . ....+- +.+ .+++.++|--.++=..-.+....+....+.+++.
T Consensus 89 ~~~g~~-d-----~r~~L~~~~~-r~i~~~~P~~~~~ENV~gl~~~~~~~~~~~i~~~ 139 (327)
T 2c7p_A 89 KQKGFE-D-----SRGTLFFDIA-RIVREKKPKVVFMENVKNFASHDNGNTLEVVKNT 139 (327)
T ss_dssp CCCGGG-S-----TTSCHHHHHH-HHHHHHCCSEEEEEEEGGGGTGGGGHHHHHHHHH
T ss_pred ccCCCc-c-----hhhHHHHHHH-HHHHhccCcEEEEeCcHHHHhccccHHHHHHHHH
Confidence 332 11 0 111111 222 2334467854444444444433344444555443
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.03 E-value=0.44 Score=44.79 Aligned_cols=48 Identities=15% Similarity=-0.061 Sum_probs=33.9
Q ss_pred HhhCCCCCCeEeeecccCcch-HHHHHHhcCCCcEEEEcCCchhh-HHhh
Q psy7769 160 LALNIRPYDTVLDMCAAPGGK-TLVALQTLYPDYYCMDGASLLPV-LALN 207 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgK-T~~la~~~~~g~V~AvD~s~~Rl-l~~~ 207 (355)
....+++|++||=.+||+.|. ++++|...+...++++|.+++|+ +.+.
T Consensus 154 ~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~ 203 (346)
T 4a2c_A 154 HLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS 203 (346)
T ss_dssp HHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred HHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH
Confidence 334678999999998866543 34555555445689999999998 4433
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=92.70 E-value=0.4 Score=45.26 Aligned_cols=41 Identities=10% Similarity=-0.018 Sum_probs=32.6
Q ss_pred CCCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 163 NIRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 163 ~~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
.+++|++||=.+||+ |..++++|...+..+|+++|.++.|+
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~ 209 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRL 209 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH
Confidence 578999999998755 55556677665557999999999998
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=92.40 E-value=0.14 Score=49.26 Aligned_cols=44 Identities=11% Similarity=-0.104 Sum_probs=32.4
Q ss_pred HhhCCCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 160 LALNIRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
...++++|++||=.+||+ |..++++|...+-.+|+++|.++.++
T Consensus 176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~ 220 (370)
T 4ej6_A 176 DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKR 220 (370)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH
Confidence 345789999999988754 44445566655434899999999998
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=92.39 E-value=0.039 Score=52.08 Aligned_cols=105 Identities=11% Similarity=0.034 Sum_probs=69.5
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee--------------
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV-------------- 229 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~-------------- 229 (355)
.+..+||+.||+|..++.++.. ..+++.+|.++..+ +++|++ . ..++++.+.|+..
T Consensus 91 n~~~~LDlfaGSGaLgiEaLS~--~d~~vfvE~~~~a~~~L~~Nl~--~----~~~~~V~~~D~~~~L~~l~~~~~~fdL 162 (283)
T 2oo3_A 91 NLNSTLSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPH--F----NKKVYVNHTDGVSKLNALLPPPEKRGL 162 (283)
T ss_dssp SSSSSCCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCC--T----TSCEEEECSCHHHHHHHHCSCTTSCEE
T ss_pred cCCCceeEeCCcHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHHhC--c----CCcEEEEeCcHHHHHHHhcCCCCCccE
Confidence 4667999999999999887762 37899999999999 899997 2 2467888888632
Q ss_pred --eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 230 --VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 230 --lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
+|||--- ..... ..-+.|..+.+ +.|+|+++. ++|.-+...++.+++..
T Consensus 163 VfiDPPYe~------------k~~~~---~vl~~L~~~~~-r~~~Gi~v~----WYPi~~~~~~~~~~~~l 213 (283)
T 2oo3_A 163 IFIDPSYER------------KEEYK---EIPYAIKNAYS-KFSTGLYCV----WYPVVNKAWTEQFLRKM 213 (283)
T ss_dssp EEECCCCCS------------TTHHH---HHHHHHHHHHH-HCTTSEEEE----EEEESSHHHHHHHHHHH
T ss_pred EEECCCCCC------------CcHHH---HHHHHHHHhCc-cCCCeEEEE----EEeccchHHHHHHHHHH
Confidence 6666410 01111 11133444333 446788775 55666677777777665
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.34 E-value=0.39 Score=45.85 Aligned_cols=42 Identities=14% Similarity=0.098 Sum_probs=32.3
Q ss_pred hCCCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
.++++|++||-.+||+ |..++++|...+-.+|+++|.++.++
T Consensus 186 ~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~ 228 (371)
T 1f8f_A 186 LKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRL 228 (371)
T ss_dssp TCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHH
Confidence 4688999999998765 55556666665433699999999998
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=92.21 E-value=0.79 Score=42.89 Aligned_cols=123 Identities=11% Similarity=0.026 Sum_probs=65.7
Q ss_pred CeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccc-cCcceE---EEEEecceeeecccCCCCCcc
Q psy7769 168 DTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTV-LDIHAL---KLVKVGGSVVYSTCSLSPIQN 241 (355)
Q Consensus 168 ~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~-~g~~~v---~~~~~Da~~lDaPCSgsG~t~ 241 (355)
.+|||++||.||.+..+-+.+- -.|.|+|+++... .+.|... ..+ .++..+ .+-..|...--+||.++-+.+
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~-~~v~a~e~d~~a~~ty~~N~~~-~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~fS~ag 78 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESNHSA-KLIKGDISKISSDEFPKCDGIIGGPPSQSWSEGG 78 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTC-EEEEEEECCTTTHHHHHHHCCS-EEEESCGGGCCGGGSCCCSEEECCCCGGGTEETT
T ss_pred CeEEEeCcCccHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHHCCC-CcccCChhhCCHhhCCcccEEEecCCCCCcCCCC
Confidence 4799999999999988766542 3578999999988 6666541 000 000000 011123333557997765332
Q ss_pred CCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 242 DGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 242 ~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
.+. ... + ....+- +++ ..++.++|--.|+=..--+....+..+.+.+++..
T Consensus 79 ~~~-g~~--d--~R~~L~~~~~-r~i~~~~Pk~~~~ENV~gl~~~~~~~~~~~i~~~l 130 (331)
T 3ubt_Y 79 SLR-GID--D--PRGKLFYEYI-RILKQKKPIFFLAENVKGMMAQRHNKAVQEFIQEF 130 (331)
T ss_dssp EEC-CTT--C--GGGHHHHHHH-HHHHHHCCSEEEEEECCGGGGCTTSHHHHHHHHHH
T ss_pred Ccc-CCC--C--chhHHHHHHH-HHHhccCCeEEEeeeecccccccccchhhhhhhhh
Confidence 211 010 1 111122 222 34455788655554555555555556666666544
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=92.19 E-value=0.51 Score=44.83 Aligned_cols=43 Identities=19% Similarity=0.076 Sum_probs=31.3
Q ss_pred hhCCCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 161 ALNIRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
..++++|++||=.+||+ |..++++|...+-..|+++|.++.++
T Consensus 174 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~ 217 (363)
T 3m6i_A 174 RAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRL 217 (363)
T ss_dssp HHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHH
T ss_pred HcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH
Confidence 34689999999987644 44445566655433599999999999
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=92.18 E-value=0.27 Score=46.61 Aligned_cols=41 Identities=5% Similarity=-0.202 Sum_probs=31.1
Q ss_pred hCCCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
.++++|++||-.+||+ |..++++|...+ .+|+++|.++.++
T Consensus 172 ~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~Vi~~~~~~~~~ 213 (348)
T 3two_A 172 SKVTKGTKVGVAGFGGLGSMAVKYAVAMG-AEVSVFARNEHKK 213 (348)
T ss_dssp TTCCTTCEEEEESCSHHHHHHHHHHHHTT-CEEEEECSSSTTH
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCC-CeEEEEeCCHHHH
Confidence 3688999999987654 444455665543 6899999999998
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=92.05 E-value=0.52 Score=45.15 Aligned_cols=42 Identities=10% Similarity=-0.111 Sum_probs=31.2
Q ss_pred hCCCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
.++++|++||=.+||+ |..++++|...+-.+|+++|.++.|+
T Consensus 189 ~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~ 231 (378)
T 3uko_A 189 AKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKY 231 (378)
T ss_dssp TCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH
Confidence 4678999999997753 44445566555434899999999998
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=91.84 E-value=0.15 Score=49.62 Aligned_cols=107 Identities=8% Similarity=-0.037 Sum_probs=62.7
Q ss_pred CCeEeeecccCcchHHHHHHh----------------cCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce
Q psy7769 167 YDTVLDMCAAPGGKTLVALQT----------------LYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS 228 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~----------------~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~ 228 (355)
.-+|+|+||+.|.-|+.+... .+.-.|+.+|.-.... +-+.+. ......++ .++.+.+.
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~--~~~~~~~~-~f~~gvpg 128 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLP--IENDVDGV-CFINGVPG 128 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTT--TSCSCTTC-EEEEEEES
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcc--hhcccCCC-EEEEecch
Confidence 358999999999999865432 1125799999998888 666655 11000112 23322221
Q ss_pred e----------eecccCCCCCccCCccccc--------------------hHHHHhhh--hHH----HHHHHHHhhccCC
Q psy7769 229 V----------VYSTCSLSPIQNDGVVHMS--------------------LKRIWEET--GCE----IEIKHALKLVKVG 272 (355)
Q Consensus 229 ~----------lDaPCSgsG~t~~~~l~~~--------------------~~~l~~l~--~lQ----~lL~~A~~~LkpG 272 (355)
. +|.-+|... ++|- +..+.+.- +.| ..|+.-.+-|+||
T Consensus 129 SFy~rlfp~~S~d~v~Ss~a------LHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pG 202 (359)
T 1m6e_X 129 SFYGRLFPRNTLHFIHSSYS------LMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPG 202 (359)
T ss_dssp CSSSCCSCTTCBSCEEEESC------TTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTT
T ss_pred hhhhccCCCCceEEEEehhh------hhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1 444444333 2331 11121111 122 6799999999999
Q ss_pred cEEEEEeCCC
Q psy7769 273 GSVVYSTCSL 282 (355)
Q Consensus 273 G~lVYsTCSl 282 (355)
|++|.++..-
T Consensus 203 G~mvl~~~gr 212 (359)
T 1m6e_X 203 GRMVLTILGR 212 (359)
T ss_dssp CEEEEEEEEC
T ss_pred ceEEEEEecC
Confidence 9999998755
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=91.50 E-value=0.15 Score=43.78 Aligned_cols=39 Identities=8% Similarity=-0.178 Sum_probs=30.6
Q ss_pred CCCCCeEeeecccCc-chHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 164 IRPYDTVLDMCAAPG-GKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 164 ~~pG~~VLD~CAgPG-gKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
..++++|||+|||+| ..+..|+... .-.|+|+|+++..+
T Consensus 33 ~~~~~rVlEVG~G~g~~vA~~La~~~-g~~V~atDInp~Av 72 (153)
T 2k4m_A 33 SGPGTRVVEVGAGRFLYVSDYIRKHS-KVDLVLTDIKPSHG 72 (153)
T ss_dssp SCSSSEEEEETCTTCCHHHHHHHHHS-CCEEEEECSSCSST
T ss_pred CCCCCcEEEEccCCChHHHHHHHHhC-CCeEEEEECCcccc
Confidence 456789999999999 4788888633 14699999998654
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=91.12 E-value=0.86 Score=43.47 Aligned_cols=42 Identities=12% Similarity=-0.016 Sum_probs=30.9
Q ss_pred hCCCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
.++++|++||-.+||+ |..++++|...+..+|+++|.++.++
T Consensus 187 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~ 229 (373)
T 1p0f_A 187 AKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKF 229 (373)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHH
Confidence 4688999999998654 33445566555433799999999998
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.05 E-value=0.77 Score=43.43 Aligned_cols=42 Identities=19% Similarity=0.169 Sum_probs=30.5
Q ss_pred hhCCCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 161 ALNIRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
..++++|++||-.+||+ |..++++|...+ .+|+++|.++.++
T Consensus 163 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~Vi~~~~~~~~~ 205 (352)
T 1e3j_A 163 RAGVQLGTTVLVIGAGPIGLVSVLAAKAYG-AFVVCTARSPRRL 205 (352)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHH
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CEEEEEcCCHHHH
Confidence 34789999999988643 334445555443 5699999999988
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=91.04 E-value=0.89 Score=43.42 Aligned_cols=42 Identities=7% Similarity=-0.081 Sum_probs=30.4
Q ss_pred hCCCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
.++++|++||-.+||+ |..++++|...+-.+|+++|.++.++
T Consensus 191 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~ 233 (376)
T 1e3i_A 191 AKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKF 233 (376)
T ss_dssp SCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH
Confidence 4678999999998654 33344555555333799999999998
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.78 E-value=0.97 Score=43.11 Aligned_cols=42 Identities=7% Similarity=-0.047 Sum_probs=30.6
Q ss_pred hCCCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
.++++|++||-.+||+ |..++++|...+-.+|+++|.++.++
T Consensus 188 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~ 230 (374)
T 1cdo_A 188 AKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKF 230 (374)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH
Confidence 4678999999998644 33445566555323799999999998
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.71 E-value=0.73 Score=44.26 Aligned_cols=42 Identities=19% Similarity=0.021 Sum_probs=30.0
Q ss_pred hC-CCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 162 LN-IRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~-~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
++ +++|++||-.++|+ |..++++|...+..+|+++|.++.++
T Consensus 190 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~ 233 (380)
T 1vj0_A 190 YPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRL 233 (380)
T ss_dssp CSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHH
T ss_pred cCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHH
Confidence 36 88999999998543 33344555554324899999999988
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=90.63 E-value=1 Score=42.96 Aligned_cols=42 Identities=5% Similarity=-0.150 Sum_probs=30.6
Q ss_pred hCCCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
.++++|++||-.+||+ |..++++|...+-.+|+++|.++.++
T Consensus 187 ~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~ 229 (374)
T 2jhf_A 187 AKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKF 229 (374)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH
Confidence 4678999999998654 33445556555323799999999998
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=90.58 E-value=1 Score=42.95 Aligned_cols=42 Identities=5% Similarity=-0.108 Sum_probs=30.5
Q ss_pred hCCCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
.++++|++||-.+||+ |..++++|...+-.+|+++|.++.++
T Consensus 186 ~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~ 228 (373)
T 2fzw_A 186 AKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKF 228 (373)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH
Confidence 4678999999998644 33344555555423799999999998
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=88.49 E-value=0.86 Score=43.40 Aligned_cols=41 Identities=12% Similarity=-0.085 Sum_probs=30.6
Q ss_pred hCCCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
.++++|++||=.++|+ |..++++|...+ .+|+++|.++.++
T Consensus 185 ~~~~~g~~VlV~G~G~vG~~a~qla~~~G-a~Vi~~~~~~~~~ 226 (363)
T 3uog_A 185 GHLRAGDRVVVQGTGGVALFGLQIAKATG-AEVIVTSSSREKL 226 (363)
T ss_dssp TCCCTTCEEEEESSBHHHHHHHHHHHHTT-CEEEEEESCHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CEEEEEecCchhH
Confidence 3578999999998655 444455565543 6999999999988
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=87.68 E-value=0.54 Score=44.55 Aligned_cols=44 Identities=18% Similarity=0.095 Sum_probs=34.8
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
..+|+.|||-+||+|..+.. |..++ -+.+++|+++..+ ++++++
T Consensus 250 ~~~~~~VlDpF~GsGtt~~a-a~~~g-r~~ig~e~~~~~~~~~~~r~~ 295 (323)
T 1boo_A 250 TEPDDLVVDIFGGSNTTGLV-AERES-RKWISFEMKPEYVAASAFRFL 295 (323)
T ss_dssp CCTTCEEEETTCTTCHHHHH-HHHTT-CEEEEEESCHHHHHHHHGGGS
T ss_pred CCCCCEEEECCCCCCHHHHH-HHHcC-CCEEEEeCCHHHHHHHHHHHH
Confidence 47899999999999974444 44332 5799999999988 777887
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=87.64 E-value=1.3 Score=41.61 Aligned_cols=42 Identities=12% Similarity=0.071 Sum_probs=29.6
Q ss_pred hhCCCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 161 ALNIRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
..++ +|++||-.+||+ |..++++|...+-.+|+++|.++.++
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~ 202 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRL 202 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHH
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH
Confidence 4467 999999998843 33344555544323899999999887
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=87.16 E-value=0.28 Score=49.55 Aligned_cols=41 Identities=15% Similarity=-0.086 Sum_probs=32.9
Q ss_pred CCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhc
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNI 208 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l 208 (355)
.-+|+|+|||.||.+..+.+.+. -.|+|+|+++... .+.|.
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG~-~~v~avE~d~~A~~ty~~N~ 130 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIGG-QCVFTSEWNKHAVRTYKANH 130 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTTE-EEEEEECCCHHHHHHHHHHS
T ss_pred cceEEEecCCccHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHhc
Confidence 45899999999999988765532 3489999999988 66665
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=86.19 E-value=5 Score=36.98 Aligned_cols=127 Identities=13% Similarity=0.119 Sum_probs=62.6
Q ss_pred EEechhcHHHHHhhCCC--------CCCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh--HHhhccccccccC
Q psy7769 149 YCMDGASLLPVLALNIR--------PYDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV--LALNIRPYDTVLD 216 (355)
Q Consensus 149 ~~QD~aS~l~~~~L~~~--------pG~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g 216 (355)
..||+++++......+. .|.+|| +.-|.||...+++..+ ...+|+.+|.+..++ +...+. . .+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~m~~l~~k~vl-VTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~--~--~~ 89 (293)
T 3rih_A 15 QTQGPGSMLVVESAEPAERKVMFDLSARSVL-VTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELG--E--LG 89 (293)
T ss_dssp -------------------CCTTCCTTCEEE-ETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHT--T--SS
T ss_pred hhcCCceeeeecCCCCcccccccCCCCCEEE-EeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH--h--hC
Confidence 45666666654333221 343444 5667788888888654 336899999999888 555555 2 23
Q ss_pred cceEEEEEeccee-----------------eecccCCCCCccCCcc-ccchHHHHhhhh--HH---HHHHHHHhhcc--C
Q psy7769 217 IHALKLVKVGGSV-----------------VYSTCSLSPIQNDGVV-HMSLKRIWEETG--CE---IEIKHALKLVK--V 271 (355)
Q Consensus 217 ~~~v~~~~~Da~~-----------------lDaPCSgsG~t~~~~l-~~~~~~l~~l~~--lQ---~lL~~A~~~Lk--p 271 (355)
..++.++..|... +|.-....|+.....+ ..+.+....... +. .+++.++..++ .
T Consensus 90 ~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~ 169 (293)
T 3rih_A 90 AGNVIGVRLDVSDPGSCADAARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASG 169 (293)
T ss_dssp SSCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHS
T ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC
Confidence 2457777777643 5665555554332222 234443332222 11 45555555443 3
Q ss_pred CcEEEEEeC
Q psy7769 272 GGSVVYSTC 280 (355)
Q Consensus 272 GG~lVYsTC 280 (355)
+|+||+.+.
T Consensus 170 ~g~iV~isS 178 (293)
T 3rih_A 170 RGRVILTSS 178 (293)
T ss_dssp SCEEEEECC
T ss_pred CCEEEEEeC
Confidence 478887654
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=86.03 E-value=0.9 Score=43.84 Aligned_cols=42 Identities=14% Similarity=0.110 Sum_probs=33.7
Q ss_pred hCCCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
.++++|++||-.+||+ |..++++|...+-.+|+++|.++.|+
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~ 223 (398)
T 2dph_A 181 AGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERL 223 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH
Confidence 4688999999999766 66667777765434899999999988
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.71 E-value=0.59 Score=44.02 Aligned_cols=76 Identities=14% Similarity=-0.013 Sum_probs=46.8
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCc-EEEEcCCchhh--HHhhcccccc-ccCcceEE---E---EEecceeeeccc
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDY-YCMDGASLLPV--LALNIRPYDT-VLDIHALK---L---VKVGGSVVYSTC 234 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~-V~AvD~s~~Rl--l~~~l~r~~~-~~g~~~v~---~---~~~Da~~lDaPC 234 (355)
+.+.+|+|+|||.||.+..+.+.+-... |+|+|+++... .+.|...... ..++..+. + -..|...-.+||
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~~~~~~~~DI~~i~~~~i~~~~~~Dll~ggpPC 93 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRSVTQKHIQEWGPFDLVIGGSPC 93 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTTTCEEEECCGGGCCHHHHHHTCCCSEEEECCCC
T ss_pred CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCCCCceeCCChHHccHHHhcccCCcCEEEecCCC
Confidence 3466999999999999988877653322 69999999988 5666541000 00111110 0 024555588999
Q ss_pred CCCCCc
Q psy7769 235 SLSPIQ 240 (355)
Q Consensus 235 SgsG~t 240 (355)
.++-+.
T Consensus 94 Q~fS~a 99 (295)
T 2qrv_A 94 NDLSIV 99 (295)
T ss_dssp GGGBTT
T ss_pred cccccc
Confidence 776533
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=85.67 E-value=3.1 Score=38.99 Aligned_cols=41 Identities=7% Similarity=-0.127 Sum_probs=29.9
Q ss_pred hCCCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
.++++|++||-.+||+ |..+.++|...+ .+|+++|.++.++
T Consensus 160 ~~~~~g~~VlV~GaG~vG~~~~~~a~~~G-a~Vi~~~~~~~~~ 201 (339)
T 1rjw_A 160 TGAKPGEWVAIYGIGGLGHVAVQYAKAMG-LNVVAVDIGDEKL 201 (339)
T ss_dssp HTCCTTCEEEEECCSTTHHHHHHHHHHTT-CEEEEECSCHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CEEEEEeCCHHHH
Confidence 3688999999998843 333344444443 6999999999988
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=85.42 E-value=0.8 Score=43.47 Aligned_cols=45 Identities=24% Similarity=0.115 Sum_probs=34.0
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCc---hhh--HHhhccc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASL---LPV--LALNIRP 210 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~---~Rl--l~~~l~r 210 (355)
..+|+.|||-+||+|..+..+..+. -+.+++|+++ .-+ +++++++
T Consensus 240 ~~~~~~vlDpF~GsGtt~~aa~~~~--r~~ig~e~~~~~~~~~~~~~~Rl~~ 289 (319)
T 1eg2_A 240 SHPGSTVLDFFAGSGVTARVAIQEG--RNSICTDAAPVFKEYYQKQLTFLQD 289 (319)
T ss_dssp SCTTCEEEETTCTTCHHHHHHHHHT--CEEEEEESSTHHHHHHHHHHHHC--
T ss_pred CCCCCEEEecCCCCCHHHHHHHHcC--CcEEEEECCccHHHHHHHHHHHHHH
Confidence 4689999999999997555444443 5799999999 777 7777773
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=85.11 E-value=2.3 Score=41.08 Aligned_cols=44 Identities=25% Similarity=0.260 Sum_probs=30.8
Q ss_pred CCCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh-HHh
Q psy7769 163 NIRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV-LAL 206 (355)
Q Consensus 163 ~~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl-l~~ 206 (355)
++++|++||=.+||+ |..++++|...+-.+|+++|.++.|+ +.+
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~ 255 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAK 255 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 578999999887643 33344555554434899999999998 443
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=84.69 E-value=2.1 Score=40.19 Aligned_cols=42 Identities=17% Similarity=-0.027 Sum_probs=31.9
Q ss_pred hhCCCCCCeEeeeccc--CcchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 161 ALNIRPYDTVLDMCAA--PGGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAg--PGgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
..++++|++||-.+|| -|.-++++|...+ .+|+++|.++.++
T Consensus 139 ~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~G-a~Vi~~~~~~~~~ 182 (340)
T 3gms_A 139 TLNLQRNDVLLVNACGSAIGHLFAQLSQILN-FRLIAVTRNNKHT 182 (340)
T ss_dssp TSCCCTTCEEEESSTTSHHHHHHHHHHHHHT-CEEEEEESSSTTH
T ss_pred hcccCCCCEEEEeCCccHHHHHHHHHHHHcC-CEEEEEeCCHHHH
Confidence 3468899999998876 3555556666543 6899999999988
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=84.25 E-value=1.8 Score=40.63 Aligned_cols=40 Identities=13% Similarity=-0.130 Sum_probs=30.6
Q ss_pred CCCCCCeEeeecccC-cchHHHHHHhcC-CCcEEEEcCCchhh
Q psy7769 163 NIRPYDTVLDMCAAP-GGKTLVALQTLY-PDYYCMDGASLLPV 203 (355)
Q Consensus 163 ~~~pG~~VLD~CAgP-GgKT~~la~~~~-~g~V~AvD~s~~Rl 203 (355)
++ +|++||-.+||+ |..++++|.... ..+|+++|.++.++
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~ 209 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHR 209 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHH
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 77 999999999854 444556666551 36899999999988
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=84.17 E-value=2.3 Score=40.50 Aligned_cols=38 Identities=8% Similarity=-0.097 Sum_probs=27.6
Q ss_pred CCCeEeeec-cc-CcchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 166 PYDTVLDMC-AA-PGGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 166 pG~~VLD~C-Ag-PGgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
+|++||=.+ +| -|..++++|+.....+|+++|.++.++
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~ 210 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQ 210 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 899998776 22 244455666654457999999999988
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=84.00 E-value=0.91 Score=43.33 Aligned_cols=71 Identities=8% Similarity=0.029 Sum_probs=45.8
Q ss_pred CCeEeeecccCcchHHHHHHhcCCC-cE-EEEcCCchhh--HHhhccccccccCcceEE---EE--EecceeeecccCCC
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTLYPD-YY-CMDGASLLPV--LALNIRPYDTVLDIHALK---LV--KVGGSVVYSTCSLS 237 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~~~g-~V-~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~---~~--~~Da~~lDaPCSgs 237 (355)
.-+|+|++||.||.+..+.+.+-.. .| +|+|+++... .+.|....-+..++..+. +. ..|.....+||.++
T Consensus 10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ~f 89 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEEVQVKNLDSISIKQIESLNCNTWFMSPPCQPY 89 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCCCBCCCTTTCCHHHHHHTCCCEEEECCCCTTC
T ss_pred CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCCcccCChhhcCHHHhccCCCCEEEecCCccCc
Confidence 3589999999999998887764223 46 6999999988 677765110001111111 11 24555578999887
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=83.40 E-value=2.6 Score=39.63 Aligned_cols=41 Identities=17% Similarity=-0.026 Sum_probs=28.8
Q ss_pred hCCCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
.++ +|++||-.+||+ |..++++|...+-.+|+++|.++.++
T Consensus 164 ~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~ 205 (348)
T 2d8a_A 164 GPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRR 205 (348)
T ss_dssp SCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHH
T ss_pred cCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH
Confidence 357 999999998843 33344555544323899999999888
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=83.07 E-value=8.8 Score=33.99 Aligned_cols=108 Identities=12% Similarity=0.011 Sum_probs=59.9
Q ss_pred CCeEeeecccCcchHHHHHHhc--CCCcEEEEcC-Cchhh--HHhhccccccccCcceEEEEEeccee------------
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGA-SLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------------ 229 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~-s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------------ 229 (355)
|.+|| +.-|.|+...+++..+ ...+|++++. +...+ +...++ . .+ .++.++..|...
T Consensus 21 ~k~vl-ItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~--~--~~-~~~~~~~~D~~~~~~~~~~~~~~~ 94 (274)
T 1ja9_A 21 GKVAL-TTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELK--K--LG-AQGVAIQADISKPSEVVALFDKAV 94 (274)
T ss_dssp TCEEE-ETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH--H--TT-CCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHH--h--cC-CcEEEEEecCCCHHHHHHHHHHHH
Confidence 55666 5666788888888654 2367999888 66665 444443 1 12 235666666432
Q ss_pred -----eecccCCCCCccCCcc-ccchHHHHhhh--hHH---HHHHHHHhhccCCcEEEEEeC
Q psy7769 230 -----VYSTCSLSPIQNDGVV-HMSLKRIWEET--GCE---IEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 230 -----lDaPCSgsG~t~~~~l-~~~~~~l~~l~--~lQ---~lL~~A~~~LkpGG~lVYsTC 280 (355)
+|.-....|+.....+ ..+.+...... ++. .+++.+.+.++.||++|+.+.
T Consensus 95 ~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS 156 (274)
T 1ja9_A 95 SHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSS 156 (274)
T ss_dssp HHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred HHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcC
Confidence 5666555553222221 22222222211 122 667777777766788888643
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=81.90 E-value=9.6 Score=33.99 Aligned_cols=106 Identities=9% Similarity=0.111 Sum_probs=61.9
Q ss_pred CCCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee------------
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------------ 229 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------------ 229 (355)
.|.+|| +.-|.||...+++..+ ...+|+.+|.++.++ +.+.+. .++.++..|...
T Consensus 7 ~gk~~l-VTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (255)
T 4eso_A 7 QGKKAI-VIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFG--------PRVHALRSDIADLNEIAVLGAAAG 77 (255)
T ss_dssp TTCEEE-EETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG--------GGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEE-EECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC--------CcceEEEccCCCHHHHHHHHHHHH
Confidence 355555 4556678888887654 336899999998887 443332 134556666432
Q ss_pred -----eecccCCCCCccCCcc-ccchHHHHhhhhH--H---HHHHHHHhhccCCcEEEEEeC
Q psy7769 230 -----VYSTCSLSPIQNDGVV-HMSLKRIWEETGC--E---IEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 230 -----lDaPCSgsG~t~~~~l-~~~~~~l~~l~~l--Q---~lL~~A~~~LkpGG~lVYsTC 280 (355)
+|.-....|+.....+ ..+.+........ . .+++.+...++.+|+||+.+.
T Consensus 78 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 139 (255)
T 4eso_A 78 QTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSS 139 (255)
T ss_dssp HHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 5655544553322222 2333333322221 1 677888888888999998654
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=81.76 E-value=16 Score=32.43 Aligned_cols=110 Identities=14% Similarity=0.032 Sum_probs=59.6
Q ss_pred CCeEeeecccCc-chHHHHHHhc--CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee------------
Q psy7769 167 YDTVLDMCAAPG-GKTLVALQTL--YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------------ 229 (355)
Q Consensus 167 G~~VLD~CAgPG-gKT~~la~~~--~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------------ 229 (355)
|.+||=.+++.| |...+++..+ ...+|++++.+.... +.+... . .+..++.++..|...
T Consensus 7 ~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~--~~~~~~~~~~~D~~~~~~v~~~~~~~~ 82 (266)
T 3oig_A 7 GRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAG--T--LDRNDSIILPCDVTNDAEIETCFASIK 82 (266)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHH--T--SSSCCCEEEECCCSSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHH--h--cCCCCceEEeCCCCCHHHHHHHHHHHH
Confidence 556665555432 4677777543 336799998886554 433333 2 122246677777543
Q ss_pred -----eecccCCCCCccC----Cc-cccchHHHHhhhh--HH---HHHHHHHhhccCCcEEEEEeC
Q psy7769 230 -----VYSTCSLSPIQND----GV-VHMSLKRIWEETG--CE---IEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 230 -----lDaPCSgsG~t~~----~~-l~~~~~~l~~l~~--lQ---~lL~~A~~~LkpGG~lVYsTC 280 (355)
+|.-....|+... .. ...+.+....... +. .+++.++..++.+|+||+.+.
T Consensus 83 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 148 (266)
T 3oig_A 83 EQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY 148 (266)
T ss_dssp HHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred HHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 4544444443221 11 1122332222211 11 678888888888999998654
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=81.58 E-value=1.9 Score=41.47 Aligned_cols=42 Identities=17% Similarity=0.107 Sum_probs=31.8
Q ss_pred hCCCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
.++++|++||-.+||+ |..++++|...+-.+|+++|.++.|+
T Consensus 181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~ 223 (398)
T 1kol_A 181 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARL 223 (398)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHH
Confidence 4688999999988655 44555666665434799999999998
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=81.46 E-value=13 Score=33.32 Aligned_cols=110 Identities=16% Similarity=0.066 Sum_probs=61.2
Q ss_pred CCCeEeeecccCc-chHHHHHHhc--CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-----------
Q psy7769 166 PYDTVLDMCAAPG-GKTLVALQTL--YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV----------- 229 (355)
Q Consensus 166 pG~~VLD~CAgPG-gKT~~la~~~--~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~----------- 229 (355)
.|..+|=-+|+.+ |....+|+.+ ...+|+.+|.+...+ +.+.++ . .+..++.++..|...
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~--~--~~~~~~~~~~~Dv~~~~~v~~~~~~~ 80 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLE--Q--LNQPEAHLYQIDVQSDEEVINGFEQI 80 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHG--G--GTCSSCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH--h--cCCCcEEEEEccCCCHHHHHHHHHHH
Confidence 3666776666543 6666666543 337899999998877 666565 2 233345666777543
Q ss_pred ------eecccCCCCCccCCcc-----ccchHHHHhh--hhHH---HHHHHHHhhccCCcEEEEEe
Q psy7769 230 ------VYSTCSLSPIQNDGVV-----HMSLKRIWEE--TGCE---IEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 230 ------lDaPCSgsG~t~~~~l-----~~~~~~l~~l--~~lQ---~lL~~A~~~LkpGG~lVYsT 279 (355)
+|.-....|+.....+ ....+..... .++. .+...+....+.||.||..+
T Consensus 81 ~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnis 146 (256)
T 4fs3_A 81 GKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATT 146 (256)
T ss_dssp HHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEE
T ss_pred HHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEe
Confidence 6655444443221111 1112222111 1111 45666778888999998754
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=81.22 E-value=3.7 Score=38.21 Aligned_cols=42 Identities=12% Similarity=-0.190 Sum_probs=29.1
Q ss_pred hhCCCCCCeEeeeccc--CcchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 161 ALNIRPYDTVLDMCAA--PGGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAg--PGgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
..++++|++||-.+|+ -|.-+.+++... ..+|++++.++.++
T Consensus 144 ~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~ 187 (336)
T 4b7c_A 144 VGQPKNGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKC 187 (336)
T ss_dssp TTCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHH
T ss_pred hcCCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHH
Confidence 3468899999987762 233334444443 36999999999888
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 355 | ||||
| d1ixka_ | 313 | c.66.1.38 (A:) Hypothetical methyltransferase PH13 | 3e-08 | |
| d2b9ea1 | 293 | c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) | 1e-07 | |
| d1sqga2 | 284 | c.66.1.38 (A:145-428) Ribosomal RNA small subunit | 1e-06 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 0.001 |
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 52.3 bits (124), Expect = 3e-08
Identities = 50/226 (22%), Positives = 88/226 (38%), Gaps = 25/226 (11%)
Query: 146 FNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLA 205
Y + +S+ P +AL+ +P + V DM AAPGGKT L L + + +
Sbjct: 96 GLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKT-SYLAQLMRNDGVIYAFDVDENRL 154
Query: 206 LNIRPYDTVLDIHALKLVKVGGSVVYST-------CSLSPIQNDGVVHMSLKRIWEETGC 258
R + L + + L + +P G +H + +R W T
Sbjct: 155 RETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMD 214
Query: 259 EIEIKHALK---------LVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIK 309
+I+ L+ ++K GG +VYSTCSL P +N+ V+ +L ++E+
Sbjct: 215 DIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDN------FDVELL 268
Query: 310 DLSQALRPLKSLFSFA-NINLSYGHLVQPHLPSNFGPMYFCKFDKI 354
L L + F + + + P + + K K+
Sbjct: 269 PLKYGEPALTNPFGIELSEEIKNARRLYPDV-HETSGFFIAKIRKL 313
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.5 bits (119), Expect = 1e-07
Identities = 49/275 (17%), Positives = 85/275 (30%), Gaps = 34/275 (12%)
Query: 101 RPSPEVDFKVVPETELHISPYL-QAFSFPSG-DISEFPSPKRGVTGVFNYYCMDGASLLP 158
R S D + + + P + + FP+ D+ E P + G + D AS LP
Sbjct: 32 RASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAG-----HLILQDRASCLP 86
Query: 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMD-GASLLPVLALNIRPYD----- 212
+ L+ P V+D CAAPG KT L + ++
Sbjct: 87 AMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC 146
Query: 213 ---TVLDIHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKH----- 264
D A+ V+ G+ L+ T + +
Sbjct: 147 CELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQ 206
Query: 265 -----ALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLK 319
+VYSTCSL +N+ VV +L++ + A P +
Sbjct: 207 QRALCHALTFPSLQRLVYSTCSLCQEENEDVVRDALQQ----NPGAFRLAPALPAW-PHR 261
Query: 320 SLFSFANINLSYGHLVQPHLPSNFGPMYFCKFDKI 354
L +F + P + + +++
Sbjct: 262 GLSTF--PGAEHCLRASPET-TLSSGFFVAVIERV 293
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 47.0 bits (110), Expect = 1e-06
Identities = 32/165 (19%), Positives = 55/165 (33%), Gaps = 15/165 (9%)
Query: 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYC------MDGASLL 201
D ++ + L + + +LD+CAAPGGKT L+ + +
Sbjct: 84 VTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVY 143
Query: 202 PVLALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDGV--VHMSLKRIWEETGCE 259
L G +P GV H +K + +
Sbjct: 144 DNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIP 203
Query: 260 IEIK-------HALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
+ +K GG++VY+TCS+ P +N + L+R
Sbjct: 204 ELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQR 248
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 37.8 bits (87), Expect = 0.001
Identities = 27/165 (16%), Positives = 52/165 (31%), Gaps = 17/165 (10%)
Query: 153 GASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPYD 212
A +L L +R + VL + AA G + D + A+
Sbjct: 43 AAMILKGHRLKLRGDERVLYLGAASGTTVS----------HLADIVDEGIIYAVEYSAKP 92
Query: 213 TVLDIHALKLVKVGGSVVYSTCSL-SPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKV 271
+ ++ +++ V + + I ++ EI +A +K
Sbjct: 93 FEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKE 152
Query: 272 GGSVV---YSTCSLSPIQNDGVVHMSLKRIWEETGCEI-EIKDLS 312
G VV + S + + V LK + E +I + L
Sbjct: 153 KGEVVIMVKARSIDSTAEPEEVFKSVLKEM--EGDFKIVKHGSLM 195
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 355 | |||
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 100.0 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 100.0 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.66 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.54 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.48 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.43 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.4 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.36 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.35 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.29 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.27 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.27 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.23 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.19 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.17 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.16 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.13 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.09 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.08 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.07 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.06 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.02 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 98.99 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 98.94 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 98.9 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 98.86 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 98.84 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 98.84 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 98.82 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 98.8 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.79 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 98.78 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 98.77 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 98.77 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 98.77 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.77 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 98.75 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 98.75 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 98.75 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.73 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 98.71 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.7 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 98.68 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 98.67 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 98.66 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.58 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 98.58 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 98.57 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.55 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.53 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 98.52 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.46 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.45 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.45 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 98.42 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.4 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.35 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.34 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 98.29 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.28 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.27 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.23 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.21 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.21 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 98.19 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.18 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 98.13 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 98.12 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.1 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.0 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 97.95 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 97.94 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.79 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 97.75 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 97.68 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.6 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.59 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.53 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.52 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 97.47 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.36 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.32 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.29 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.29 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 97.27 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.09 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 96.97 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 96.94 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 96.94 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.69 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.59 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 96.57 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 96.55 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 96.53 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.51 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 96.46 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.45 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.37 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 96.24 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.16 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 96.08 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 95.83 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 95.76 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.63 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 95.61 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 95.51 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.4 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 94.99 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 94.4 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.18 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 94.04 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.94 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 93.31 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 93.3 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 92.76 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 92.28 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 92.16 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 92.15 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 92.05 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 91.35 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 91.16 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 91.14 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 91.08 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 90.92 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 90.89 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 89.86 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 87.89 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 86.21 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 86.16 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 85.3 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 83.71 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 82.31 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 81.2 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 80.69 |
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.3e-52 Score=395.97 Aligned_cols=238 Identities=17% Similarity=0.158 Sum_probs=194.4
Q ss_pred CCCCcceecccCCCChhhhhhh-ccccccCCCCCcceeeCCCcCCCCCccceeEecCCCCcccCCCCCCCCcceeeEEEe
Q psy7769 73 TGLHDFIPATQLKGMEGFITDA-DYMDYYRPSPEVDFKVVPETELHISPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCM 151 (355)
Q Consensus 73 ~~l~~~~rvn~lk~~~~~i~e~-~~~~~~~~~~~~~~~v~~~~~~~~p~~l~~~~~~~~~~~~~p~~~~g~~~~~~~~~Q 151 (355)
..+|.|+|||++|+.++.+.+. +..+ + ...+...+|..+.+ ...+.+..+|.|+.|. +|+|
T Consensus 26 ~~~p~~lRvN~~k~s~~~~~~~L~~~g---------i--~~~~~~~~p~~l~l--~~~~~l~~~~~~~~G~-----~~vQ 87 (284)
T d1sqga2 26 QRPPMWLRINRTHHSRDSWLALLDEAG---------M--KGFPHADYPDAVRL--ETPAPVHALPGFEDGW-----VTVQ 87 (284)
T ss_dssp SCCCEEEEECTTTCCHHHHHHHHHHTT---------C--CEECCTTCTTEEEE--SSCCCGGGSTTGGGTS-----EEEC
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHhcC---------C--ceeecCCCCcccee--ccccchhhChhhhccE-----EEec
Confidence 3468899999999988876653 1000 1 11233457877766 3456888999999997 9999
Q ss_pred chhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEE-----
Q psy7769 152 DGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVK----- 224 (355)
Q Consensus 152 D~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~----- 224 (355)
|++||+++.+|++++|++||||||||||||++||+++.+|.|+|+|+++.|+ ++++++| .|..++.+..
T Consensus 88 D~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r----~g~~~~~~~~~~~~~ 163 (284)
T d1sqga2 88 DASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKR----LGMKATVKQGDGRYP 163 (284)
T ss_dssp CHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHH----TTCCCEEEECCTTCT
T ss_pred cccccccccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhc----ccccceeeecccccc
Confidence 9999999999999999999999999999999999988779999999999999 9999994 4666655543
Q ss_pred --------ecceeeecccCCCCCccCCc--cc--cchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHH
Q psy7769 225 --------VGGSVVYSTCSLSPIQNDGV--VH--MSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVV 291 (355)
Q Consensus 225 --------~Da~~lDaPCSgsG~t~~~~--l~--~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV 291 (355)
+|...|||||||+| +.+++ ++ |++.++.++..+| +||++|+++|||||+|||||||++|+|||+||
T Consensus 164 ~~~~~~~~fd~IL~DaPCSg~G-~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv 242 (284)
T d1sqga2 164 SQWCGEQQFDRILLDAPCSATG-VIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQI 242 (284)
T ss_dssp HHHHTTCCEEEEEEECCCCCGG-GTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHH
T ss_pred chhcccccccEEEEeccccccC-ccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHH
Confidence 34455999999999 66666 44 7888999999999 99999999999999999999999999999999
Q ss_pred HHHHHhhhhccCceEEEecccccccccccccccccCCCccEEEEecCCCCCCCceEEEEEEE
Q psy7769 292 HMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFDK 353 (355)
Q Consensus 292 ~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~P~~~~~~~gfFia~l~r 353 (355)
++||++++ ++++++.. .+. ..|.+++||.+ ++||||+|+|+|
T Consensus 243 ~~~l~~~~-----~~~~~~~~------------~~~--~~~~~~~P~~~-~~dGFF~A~l~K 284 (284)
T d1sqga2 243 KAFLQRTA-----DAELCETG------------TPE--QPGKQNLPGAE-EGDGFFYAKLIK 284 (284)
T ss_dssp HHHHHHCT-----TCEECSSB------------CSS--SBSEEECCCTT-SCCSEEEEEEEC
T ss_pred HHHHHhCC-----CcEEecCC------------CCC--CCcEEECCCCC-CcccEEEEEEEC
Confidence 99999863 34444431 011 46789999997 789999999987
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=3.3e-52 Score=401.01 Aligned_cols=251 Identities=21% Similarity=0.254 Sum_probs=198.6
Q ss_pred CCcceecccCCCChhhhhhhccccccCCCCCcceeeCCCcCCCCCccceeEecCCCCcccCCCCCCCCcceeeEEEechh
Q psy7769 75 LHDFIPATQLKGMEGFITDADYMDYYRPSPEVDFKVVPETELHISPYLQAFSFPSGDISEFPSPKRGVTGVFNYYCMDGA 154 (355)
Q Consensus 75 l~~~~rvn~lk~~~~~i~e~~~~~~~~~~~~~~~~v~~~~~~~~p~~l~~~~~~~~~~~~~p~~~~g~~~~~~~~~QD~a 154 (355)
+|.|+|||++|+.++.+.+. +.+ .. +. .+..+++|+.+.+. ...+++..+|.++.|. +|+||++
T Consensus 41 ~p~~iRvN~~k~~~e~~~~~-----L~~-~g--~~--~~~~~~~~~~~~~~-~~~~~l~~~~~~~~G~-----~~vQD~a 104 (313)
T d1ixka_ 41 LPRCFRVNTLKISVQDLVKR-----LNK-KG--FQ--FKRVPWAKEGFCLT-REPFSITSTPEFLTGL-----IYIQEAS 104 (313)
T ss_dssp CCCEEEECTTTSCHHHHHHH-----HHH-TT--CE--EEEETTEEEEEEEE-ECSSCGGGSHHHHTTS-----EEECCHH
T ss_pred CCeEEEEcCCcCCHHHHHHH-----HHh-CC--Cc--eEECCCCcchhhhc-cCCCccccCHhhhhce-----EEEeccc
Confidence 78999999999998887664 100 00 11 12345677777664 3456788899999987 9999999
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc----
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG---- 227 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da---- 227 (355)
||+++.+|+|+||++|||+||||||||++++++++ .|.|+|+|+++.|+ ++++++| .+..|+.++..|+
T Consensus 105 S~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r----~~~~~i~~~~~d~~~~~ 180 (313)
T d1ixka_ 105 SMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSR----LGVLNVILFHSSSLHIG 180 (313)
T ss_dssp HHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHH----HTCCSEEEESSCGGGGG
T ss_pred ccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHH----HHhhccccccccccccc
Confidence 99999999999999999999999999999998774 59999999999999 8999994 4667777765544
Q ss_pred --------eeeecccCCCCCccCCc--cc--cchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHH
Q psy7769 228 --------SVVYSTCSLSPIQNDGV--VH--MSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMS 294 (355)
Q Consensus 228 --------~~lDaPCSgsG~t~~~~--l~--~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~ 294 (355)
..|||||||+| +.+++ ++ |+++++.+++.+| +||.+|+++|||||+|||||||++++|||+||++|
T Consensus 181 ~~~~~fD~ILvDaPCSg~G-~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~ 259 (313)
T d1ixka_ 181 ELNVEFDKILLDAPCTGSG-TIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWA 259 (313)
T ss_dssp GGCCCEEEEEEECCTTSTT-TCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHH
T ss_pred cccccccEEEEccccccCC-ceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHH
Confidence 44999999999 55665 54 6788999999999 99999999999999999999999999999999999
Q ss_pred HHhhhhccCceEEEecccccccccccc--cccccCCCccEEEEecCCCCCCCceEEEEEEEc
Q psy7769 295 LKRIWEETGCEIEIKDLSQALRPLKSL--FSFANINLSYGHLVQPHLPSNFGPMYFCKFDKI 354 (355)
Q Consensus 295 L~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~g~~~~P~~~~~~~gfFia~l~r~ 354 (355)
|+++ + ++.+++....+++... ..+.+.. ++|.|++||.+ ++||||+|+|+|.
T Consensus 260 L~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~~P~~~-~~dGfFiA~l~Kv 313 (313)
T d1ixka_ 260 LDNF----D--VELLPLKYGEPALTNPFGIELSEEI-KNARRLYPDVH-ETSGFFIAKIRKL 313 (313)
T ss_dssp HHHS----S--EEEECCCSSEECCSSGGGCCCCGGG-GGSEEECTTTS-SSCSEEEEEEEEC
T ss_pred HhcC----C--CEEeecccCCccccCcccccccccc-CCcEEECCCCC-CcccEEEEEEEEC
Confidence 9864 3 5555554333333221 2333333 67899999997 7899999999984
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-50 Score=386.89 Aligned_cols=259 Identities=20% Similarity=0.205 Sum_probs=189.5
Q ss_pred CCcceecccCCCChhhhhhh---ccccccCCCCCcc-eeeCC----CcCCCCCccceeEecCCCCcccCCCCCCCCccee
Q psy7769 75 LHDFIPATQLKGMEGFITDA---DYMDYYRPSPEVD-FKVVP----ETELHISPYLQAFSFPSGDISEFPSPKRGVTGVF 146 (355)
Q Consensus 75 l~~~~rvn~lk~~~~~i~e~---~~~~~~~~~~~~~-~~v~~----~~~~~~p~~l~~~~~~~~~~~~~p~~~~g~~~~~ 146 (355)
+|+|+|||++|..++++.+. +++.......... +.... ...+++|..+.+ ....++...|.++.|.
T Consensus 2 lP~~~RVNtlk~~~ee~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~--~~~~~l~~~~~~~~G~---- 75 (293)
T d2b9ea1 2 LPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVF--PAQTDLHEHPLYRAGH---- 75 (293)
T ss_dssp CCEEEEECTTTCCHHHHHHHHHHTTCEEEEECSSHHHHHTCCTTEEEECSSSTTEEEE--CTTCCCTTSHHHHTTS----
T ss_pred CCeEEEECCCcCCHHHHHHHHHHcCCccccccccchhhhhcccccccccCCCCCeEEe--CCCCCcccChHHhCcE----
Confidence 79999999999999987765 3332211111100 00000 123567877655 3567888889999987
Q ss_pred eEEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhccccccccCcceEEEE
Q psy7769 147 NYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLV 223 (355)
Q Consensus 147 ~~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~ 223 (355)
||+||++|++++++|++++|++||||||||||||+|||+++ +.++|+|+|+++.|+ +++|++| .|+.++.+.
T Consensus 76 -~~~QD~sS~l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r----~g~~~~~~~ 150 (293)
T d2b9ea1 76 -LILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLAR----AGVSCCELA 150 (293)
T ss_dssp -EEECCTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH----TTCCSEEEE
T ss_pred -EEEcCCcccccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHh----cCccceeee
Confidence 99999999999999999999999999999999999999876 458999999999999 9999994 577788887
Q ss_pred Eecc---------------eeeecccCCCCCccCCc--ccc--c--hHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCC
Q psy7769 224 KVGG---------------SVVYSTCSLSPIQNDGV--VHM--S--LKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 224 ~~Da---------------~~lDaPCSgsG~t~~~~--l~~--~--~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCS 281 (355)
..|+ ..+||||||+| +.+++ ++| + ..++..+..+| +||.+|+. ++|||+|||||||
T Consensus 151 ~~d~~~~~~~~~~~~~fD~VL~DaPCSg~G-~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~~-l~~gG~lvYsTCS 228 (293)
T d2b9ea1 151 EEDFLAVSPSDPRYHEVHYILLDPSCSGSG-MPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALT-FPSLQRLVYSTCS 228 (293)
T ss_dssp ECCGGGSCTTCGGGTTEEEEEECCCCCC-------------------CCHHHHHHHHHHHHHHHTT-CTTCCEEEEEESC
T ss_pred ehhhhhhcccccccceeeEEeecCcccchh-hhcccchhhccCCcchhhHHHHhhhhHHhHHHhhh-cccccEEEEeecc
Confidence 7664 34999999999 66665 443 3 33467889999 99999996 6999999999999
Q ss_pred CCCCCCHHHHHHHHHhhhhccCceEEEecccccccccccccccccCCCccEEEEecCCCCCCCceEEEEEEEc
Q psy7769 282 LSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLKSLFSFANINLSYGHLVQPHLPSNFGPMYFCKFDKI 354 (355)
Q Consensus 282 l~~~ENE~vV~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~P~~~~~~~gfFia~l~r~ 354 (355)
++++|||+||++||+++++ .+++++..+.+.... +...+. ..++.|++||.+ +++|||+|+|+|.
T Consensus 229 l~~~ENe~vV~~~L~~~~~----~~~l~~~~~~~~~~~--~~~~~~-~~~~~r~~P~~~-~~dGfFiA~L~ki 293 (293)
T d2b9ea1 229 LCQEENEDVVRDALQQNPG----AFRLAPALPAWPHRG--LSTFPG-AEHCLRASPETT-LSSGFFVAVIERV 293 (293)
T ss_dssp CCGGGTHHHHHHHHTTSTT----TEEECCCCTTCCCBC--CSSSTT-GGGSEEECHHHH-SSCSEEEEEEEEC
T ss_pred CChhHhHHHHHHHHHhCCC----CEEeccCcccccccc--cccCCC-CCCEEEECCCCC-CccCEEEEEEEEC
Confidence 9999999999999998642 244554433221110 111122 257889999987 7799999999984
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.66 E-value=5.7e-17 Score=154.42 Aligned_cols=129 Identities=15% Similarity=0.105 Sum_probs=98.8
Q ss_pred hCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc------------
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG------------ 227 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da------------ 227 (355)
+....|.+|||+|||+|++++++|... .+|+++|+|+.++ +++|++ . .|..+++++..|+
T Consensus 141 ~~~~~g~rVLDl~~gtG~~s~~~a~g~--~~V~~vD~s~~al~~a~~n~~--~--ngl~~~~~i~~d~~~~~~~~~~~~~ 214 (318)
T d1wxxa2 141 MERFRGERALDVFSYAGGFALHLALGF--REVVAVDSSAEALRRAEENAR--L--NGLGNVRVLEANAFDLLRRLEKEGE 214 (318)
T ss_dssp GGGCCEEEEEEETCTTTHHHHHHHHHE--EEEEEEESCHHHHHHHHHHHH--H--TTCTTEEEEESCHHHHHHHHHHTTC
T ss_pred HHHhCCCeeeccCCCCcHHHHHHHhcC--CcEEeecchHHHHHHHHHHHH--H--cCCCCcceeeccHHHHhhhhHhhhc
Confidence 334579999999999999999988644 6899999999999 899998 3 4666788877664
Q ss_pred ----eeeecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCC--CCCCCCHHHHHHHHHhhhh
Q psy7769 228 ----SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCS--LSPIQNDGVVHMSLKRIWE 300 (355)
Q Consensus 228 ----~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCS--l~~~ENE~vV~~~L~~~~~ 300 (355)
..+||||++.+ ...+......+ +++..++++|||||.|||+||| ++.++.+.+|..+....
T Consensus 215 ~fD~Vi~DpP~~~~~----------~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a-- 282 (318)
T d1wxxa2 215 RFDLVVLDPPAFAKG----------KKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDA-- 282 (318)
T ss_dssp CEEEEEECCCCSCCS----------TTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHT--
T ss_pred CCCEEEEcCCccccc----------hHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHc--
Confidence 33999997766 12233334445 9999999999999999999999 56667777887777643
Q ss_pred ccCceEEEec
Q psy7769 301 ETGCEIEIKD 310 (355)
Q Consensus 301 ~~~~~~~~~~ 310 (355)
+.++..+.
T Consensus 283 --~~~~~~~~ 290 (318)
T d1wxxa2 283 --HRLLRVVE 290 (318)
T ss_dssp --TCCEEEEE
T ss_pred --CCCEEEEE
Confidence 44454443
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.54 E-value=5.5e-15 Score=140.75 Aligned_cols=138 Identities=18% Similarity=0.099 Sum_probs=97.8
Q ss_pred echhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecc
Q psy7769 151 MDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGG 227 (355)
Q Consensus 151 QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da 227 (355)
|.....++... .++|.+|||+|||+|++++++|..+ ..+|+++|+++..+ +++|++ . .|. .++.++++|+
T Consensus 132 qr~~r~~~~~~--~~~g~~VLDl~~g~G~~si~~a~~g-a~~V~~vD~s~~al~~a~~N~~--~--ngl~~~~~~~~~d~ 204 (324)
T d2as0a2 132 QRENRLALEKW--VQPGDRVLDVFTYTGGFAIHAAIAG-ADEVIGIDKSPRAIETAKENAK--L--NGVEDRMKFIVGSA 204 (324)
T ss_dssp THHHHHHHGGG--CCTTCEEEETTCTTTHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHH--H--TTCGGGEEEEESCH
T ss_pred hhhHHHHHHhh--cCCCCeeecccCcccchhhhhhhcC-CcEEEeecCCHHHHHHHHHHHH--H--cCCCccceeeechh
Confidence 44444454433 4789999999999999999988764 35899999999999 889998 3 344 4677877664
Q ss_pred ----------------eeeecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCC--CCH
Q psy7769 228 ----------------SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPI--QND 288 (355)
Q Consensus 228 ----------------~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~--ENE 288 (355)
..+||||.+.+ ..........+ +++..|+++|+|||.|||||||-+-. +-.
T Consensus 205 ~~~~~~~~~~~~~fD~Vi~DpP~~~~~----------~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~ 274 (324)
T d2as0a2 205 FEEMEKLQKKGEKFDIVVLDPPAFVQH----------EKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFK 274 (324)
T ss_dssp HHHHHHHHHTTCCEEEEEECCCCSCSS----------GGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHH
T ss_pred hhhhHHHHhccCCCCchhcCCccccCC----------HHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHH
Confidence 33999996544 22233333333 89999999999999999999997543 333
Q ss_pred HHHHHHHHhhhhccCceEEEe
Q psy7769 289 GVVHMSLKRIWEETGCEIEIK 309 (355)
Q Consensus 289 ~vV~~~L~~~~~~~~~~~~~~ 309 (355)
++|..+..+ .|..+.++
T Consensus 275 ~~v~~a~~~----~gr~~~~~ 291 (324)
T d2as0a2 275 DMIIAAGAK----AGKFLKML 291 (324)
T ss_dssp HHHHHHHHH----TTEEEEES
T ss_pred HHHHHHHHH----cCCeEEEe
Confidence 555555443 34445544
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.48 E-value=1.9e-14 Score=136.86 Aligned_cols=122 Identities=12% Similarity=0.052 Sum_probs=87.1
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce------------
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS------------ 228 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~------------ 228 (355)
...+|.+|||+|||+|+++++++..+ ...|+++|+++..+ +++|++ .+..+..+++++..|+.
T Consensus 141 ~~~~g~~VLdlf~~~G~~sl~aa~~g-a~~V~~vD~s~~a~~~a~~N~~--~n~l~~~~~~~i~~d~~~~l~~~~~~~~~ 217 (317)
T d2b78a2 141 GSAAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFE--ANHLDMANHQLVVMDVFDYFKYARRHHLT 217 (317)
T ss_dssp TTTBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHH--HTTCCCTTEEEEESCHHHHHHHHHHTTCC
T ss_pred HhhCCCceeecCCCCcHHHHHHHhCC-CceEEEecCCHHHHHHHHHHHH--HhcccCcceEEEEccHHHHHHHHHhhcCC
Confidence 45679999999999999999877643 35799999999999 888987 32133356888887763
Q ss_pred ----eeecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCC--CCCCCHHHHHHHHHh
Q psy7769 229 ----VVYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSL--SPIQNDGVVHMSLKR 297 (355)
Q Consensus 229 ----~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl--~~~ENE~vV~~~L~~ 297 (355)
.+|||+.+.. +..+.....-+ +|+..|+++|+|||.|+|||||- +.++-+..|..++..
T Consensus 218 fD~Ii~DPP~f~~~----------~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~a~~~ 283 (317)
T d2b78a2 218 YDIIIIDPPSFARN----------KKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGK 283 (317)
T ss_dssp EEEEEECCCCC---------------CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCEEEEcChhhccc----------hhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHHHHHH
Confidence 2999984322 11111222223 89999999999999999999994 444445666666543
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.43 E-value=1.5e-13 Score=123.00 Aligned_cols=125 Identities=20% Similarity=0.108 Sum_probs=88.1
Q ss_pred hCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCC
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPI 239 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~ 239 (355)
|.++||++|||+|||+|+.+.++|+..++++|+|+|+++.++ ++++.+ . .+|+.++..|+.. +++....
T Consensus 52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~--~----~~ni~~i~~d~~~--~~~~~~~- 122 (209)
T d1nt2a_ 52 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVR--E----RNNIIPLLFDASK--PWKYSGI- 122 (209)
T ss_dssp CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHH--H----CSSEEEECSCTTC--GGGTTTT-
T ss_pred CCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhh--c----cCCceEEEeeccC--ccccccc-
Confidence 568999999999999999999999998779999999999999 777776 2 2467888888653 2221100
Q ss_pred ccCCc-cccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE---eCCCCCCCCHHHHHHHHHhh
Q psy7769 240 QNDGV-VHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS---TCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 240 t~~~~-l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs---TCSl~~~ENE~vV~~~L~~~ 298 (355)
.+.. +.+. .+......+.+|.++.++|||||+++.+ .|.-...+.+.+.+...+..
T Consensus 123 -~~~vd~v~~--~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~~l 182 (209)
T d1nt2a_ 123 -VEKVDLIYQ--DIAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKEM 182 (209)
T ss_dssp -CCCEEEEEE--CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHHH
T ss_pred -cceEEEEEe--cccChhhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHHHH
Confidence 0000 0010 0101111127799999999999999765 47777788888888777654
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.40 E-value=1.6e-12 Score=117.83 Aligned_cols=120 Identities=17% Similarity=0.106 Sum_probs=76.0
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCC
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPI 239 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~ 239 (355)
.++||++|||+|||+|..|.|+|+.+ +.|+|+|+|+++.++ ++++++ . ..++..+..|+...+..-....
T Consensus 70 ~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~--~----~~~~~~i~~d~~~~~~~~~~~~- 142 (227)
T d1g8aa_ 70 PIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVE--E----RRNIVPILGDATKPEEYRALVP- 142 (227)
T ss_dssp CCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHS--S----CTTEEEEECCTTCGGGGTTTCC-
T ss_pred ccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHH--h----cCCceEEEEECCCccccccccc-
Confidence 47899999999999999999999987 459999999999999 777776 2 2345666666543111100000
Q ss_pred ccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe--CCCCCCCC-HHHHHH
Q psy7769 240 QNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST--CSLSPIQN-DGVVHM 293 (355)
Q Consensus 240 t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT--CSl~~~EN-E~vV~~ 293 (355)
.-.+.+. .+......+.++.++.++|||||+++.++ +|....++ +.+.+.
T Consensus 143 --~vD~i~~--d~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~ 195 (227)
T d1g8aa_ 143 --KVDVIFE--DVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFRE 195 (227)
T ss_dssp --CEEEEEE--CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHH
T ss_pred --ceEEEEE--EccccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHH
Confidence 0000000 00000011168999999999999998763 44444444 444443
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.36 E-value=1.9e-12 Score=112.87 Aligned_cols=118 Identities=12% Similarity=0.104 Sum_probs=89.4
Q ss_pred HHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEeccee---
Q psy7769 156 LLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSV--- 229 (355)
Q Consensus 156 ~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~--- 229 (355)
.+....|+|+||++|||+|||+|..|..+|... ++|+|+|+++.++ +++|++ . .+. .+++++++|+..
T Consensus 23 ~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~~~l~~a~~n~~--~--~gl~~~v~~~~gda~~~~~ 96 (186)
T d1l3ia_ 23 CLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQ--R--HGLGDNVTLMEGDAPEALC 96 (186)
T ss_dssp HHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHH--H--TTCCTTEEEEESCHHHHHT
T ss_pred HHHHHhcCCCCCCEEEEEECCeEcccccccccc--eEEEEecCCHHHHHHHHHHHH--H--cCCCcceEEEECchhhccc
Confidence 445556899999999999999999999988764 6999999999999 999998 3 355 589999998753
Q ss_pred ----eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 230 ----VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 230 ----lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
.|.--.+.+ .....++++.+.+.|||||++|++..+. |+...+..++..+
T Consensus 97 ~~~~~D~v~~~~~----------------~~~~~~~~~~~~~~LkpgG~lvi~~~~~---e~~~~~~~~l~~~ 150 (186)
T d1l3ia_ 97 KIPDIDIAVVGGS----------------GGELQEILRIIKDKLKPGGRIIVTAILL---ETKFEAMECLRDL 150 (186)
T ss_dssp TSCCEEEEEESCC----------------TTCHHHHHHHHHHTEEEEEEEEEEECBH---HHHHHHHHHHHHT
T ss_pred ccCCcCEEEEeCc----------------cccchHHHHHHHHHhCcCCEEEEEeecc---ccHHHHHHHHHHc
Confidence 221111100 0112378999999999999999887766 7777777777653
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.35 E-value=2.6e-12 Score=118.91 Aligned_cols=113 Identities=13% Similarity=0.087 Sum_probs=85.4
Q ss_pred chhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecc
Q psy7769 152 DGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGG 227 (355)
Q Consensus 152 D~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da 227 (355)
-+.+.+.+..|+++||++|||+|||+|+.|.++|..+ +.|+|+++|+++.++ +++|+++ .+. .++.+...|.
T Consensus 89 pkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~----~g~~~~v~~~~~d~ 164 (266)
T d1o54a_ 89 PKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTK----WGLIERVTIKVRDI 164 (266)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHH----TTCGGGEEEECCCG
T ss_pred hHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHH----hccccCcEEEeccc
Confidence 3456688999999999999999999999999999876 458999999999999 8889884 233 5666666553
Q ss_pred ee-----------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEE-EEeCCCCCCCCHHHHHHHH
Q psy7769 228 SV-----------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVV-YSTCSLSPIQNDGVVHMSL 295 (355)
Q Consensus 228 ~~-----------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lV-YsTCSl~~~ENE~vV~~~L 295 (355)
.. +|.|. ++ +.|+++.++|||||+++ |+.|. .++++.+
T Consensus 165 ~~~~~~~~~D~V~~d~p~--------------p~---------~~l~~~~~~LKpGG~lv~~~P~~-------~Qv~~~~ 214 (266)
T d1o54a_ 165 SEGFDEKDVDALFLDVPD--------------PW---------NYIDKCWEALKGGGRFATVCPTT-------NQVQETL 214 (266)
T ss_dssp GGCCSCCSEEEEEECCSC--------------GG---------GTHHHHHHHEEEEEEEEEEESSH-------HHHHHHH
T ss_pred cccccccceeeeEecCCC--------------HH---------HHHHHHHhhcCCCCEEEEEeCcc-------cHHHHHH
Confidence 21 22222 22 56999999999999997 55553 4555555
Q ss_pred Hhh
Q psy7769 296 KRI 298 (355)
Q Consensus 296 ~~~ 298 (355)
+..
T Consensus 215 ~~l 217 (266)
T d1o54a_ 215 KKL 217 (266)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.29 E-value=2.8e-12 Score=118.74 Aligned_cols=127 Identities=13% Similarity=0.022 Sum_probs=89.1
Q ss_pred chhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce
Q psy7769 152 DGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS 228 (355)
Q Consensus 152 D~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~ 228 (355)
.+.+.+.+..|+++||++|||+|||+|..|.+||..++ .|+|+++|+++.++ +++|++++. .....|+.+.+.|..
T Consensus 82 pkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~-~~~~~nv~~~~~d~~ 160 (264)
T d1i9ga_ 82 PKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCY-GQPPDNWRLVVSDLA 160 (264)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHH-TSCCTTEEEECSCGG
T ss_pred hHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhc-cCCCceEEEEecccc
Confidence 44466888999999999999999999999999999864 59999999999999 888888421 112367888887764
Q ss_pred eeecccCCCCCccCCc-cc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 229 VVYSTCSLSPIQNDGV-VH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 229 ~lDaPCSgsG~t~~~~-l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
....|. + +.|.- +. -+|+ +.+.++.+.|||||++|..+.++ .++++.++..
T Consensus 161 ~~~~~~---~-~fDaV~ldlp~P~---------~~l~~~~~~LkpGG~lv~~~P~i------~Qv~~~~~~l 213 (264)
T d1i9ga_ 161 DSELPD---G-SVDRAVLDMLAPW---------EVLDAVSRLLVAGGVLMVYVATV------TQLSRIVEAL 213 (264)
T ss_dssp GCCCCT---T-CEEEEEEESSCGG---------GGHHHHHHHEEEEEEEEEEESSH------HHHHHHHHHH
T ss_pred cccccC---C-CcceEEEecCCHH---------HHHHHHHhccCCCCEEEEEeCcc------ChHHHHHHHH
Confidence 311110 0 00110 10 1132 45889999999999998766665 3555555443
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.27 E-value=4.7e-12 Score=116.27 Aligned_cols=117 Identities=10% Similarity=0.087 Sum_probs=80.7
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEE
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVK 224 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~ 224 (355)
+|..|.+ +.+..++++||++|||+|||+|+.|..+|..+ +.|+|+++|.++.++ +++|++++ .+..|+.+..
T Consensus 69 iypkD~~--~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~---~~~~nv~~~~ 143 (250)
T d1yb2a1 69 ISEIDAS--YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEF---YDIGNVRTSR 143 (250)
T ss_dssp --------------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTT---SCCTTEEEEC
T ss_pred cCHHHHH--HHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh---cCCCceEEEE
Confidence 5777755 45678999999999999999999999999876 458999999999999 89999832 2457888888
Q ss_pred eccee-----------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHH
Q psy7769 225 VGGSV-----------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHM 293 (355)
Q Consensus 225 ~Da~~-----------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~ 293 (355)
.|... +|.|. ++ +.|.++.+.|||||+++...-++ .++++
T Consensus 144 ~Di~~~~~~~~fD~V~ld~p~--------------p~---------~~l~~~~~~LKpGG~lv~~~P~i------~Qv~~ 194 (250)
T d1yb2a1 144 SDIADFISDQMYDAVIADIPD--------------PW---------NHVQKIASMMKPGSVATFYLPNF------DQSEK 194 (250)
T ss_dssp SCTTTCCCSCCEEEEEECCSC--------------GG---------GSHHHHHHTEEEEEEEEEEESSH------HHHHH
T ss_pred eeeecccccceeeeeeecCCc--------------hH---------HHHHHHHHhcCCCceEEEEeCCc------ChHHH
Confidence 77542 22222 22 45899999999999998543333 45666
Q ss_pred HHHhh
Q psy7769 294 SLKRI 298 (355)
Q Consensus 294 ~L~~~ 298 (355)
.++..
T Consensus 195 ~~~~l 199 (250)
T d1yb2a1 195 TVLSL 199 (250)
T ss_dssp HHHHS
T ss_pred HHHHH
Confidence 66544
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.27 E-value=2.9e-12 Score=114.69 Aligned_cols=114 Identities=11% Similarity=0.043 Sum_probs=83.1
Q ss_pred HHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecc
Q psy7769 156 LLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYST 233 (355)
Q Consensus 156 ~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaP 233 (355)
.+.+..++++||++|||+|||+|..|..+++.+ ++|+|+|+|+.++ +++++. . .+..++.++++|+..+..|
T Consensus 6 ~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~--~--~~~~~~~~~~~d~~~~~~~ 79 (234)
T d1xxla_ 6 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQ--E--KGVENVRFQQGTAESLPFP 79 (234)
T ss_dssp HHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHH--H--HTCCSEEEEECBTTBCCSC
T ss_pred HHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhc--c--ccccccccccccccccccc
Confidence 466788899999999999999999999999875 6899999999999 777766 3 3556789999987653222
Q ss_pred cCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 234 CSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 234 CSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
- | +.+ +.+....+....+.+.+|+++.++|||||++++++-+
T Consensus 80 ~---~-~fD--~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~ 121 (234)
T d1xxla_ 80 D---D-SFD--IITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHY 121 (234)
T ss_dssp T---T-CEE--EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred c---c-ccc--eeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcC
Confidence 0 1 101 1111111223334458899999999999999997543
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.23 E-value=7.2e-12 Score=110.65 Aligned_cols=124 Identities=15% Similarity=0.135 Sum_probs=89.9
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEe----------
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKV---------- 225 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~---------- 225 (355)
++.+|+|++|+.|||+|||+||.|.++++..+.++|+|+|.++.++ ++++++ .| + .++.+++.
T Consensus 15 vi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~--~~--~-~r~~~~~~~f~~~~~~~~ 89 (192)
T d1m6ya2 15 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLK--EF--S-DRVSLFKVSYREADFLLK 89 (192)
T ss_dssp HHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTG--GG--T-TTEEEEECCGGGHHHHHH
T ss_pred HHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhc--cc--c-ccccchhHHHhhHHHHHH
Confidence 4567889999999999999999999999988779999999999999 777777 32 1 23555544
Q ss_pred -------cceeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 226 -------GGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 226 -------Da~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
|+..+|..||+.- +.. .-..+..+.+.|..+.++|+|||+++..|+. ..|+ ..|+.++...
T Consensus 90 ~~~~~~vdgIl~DlGvSs~Q------ld~---~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~--s~Ed-r~vk~~f~~~ 157 (192)
T d1m6ya2 90 TLGIEKVDGILMDLGVSTYQ------LKG---ENRELENLKEFLKKAEDLLNPGGRIVVISFH--SLED-RIVKETFRNS 157 (192)
T ss_dssp HTTCSCEEEEEEECSCCHHH------HHT---SHTHHHHHHHHHHHGGGGEEEEEEEEEEESS--HHHH-HHHHHHHHHC
T ss_pred HcCCCCcceeeeccchhHhh------hhh---hhccchhHHHHHHHHHHhcCCCCeeeeeccc--cHHH-HHHHHHHhhc
Confidence 4444666664311 000 0122333338899999999999999976644 4454 7888888764
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.19 E-value=1e-11 Score=109.99 Aligned_cols=111 Identities=11% Similarity=0.010 Sum_probs=81.3
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCC
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSL 236 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSg 236 (355)
...++++++++|||++||+|..|.+++..+ .+|+|+|+|+.++ +++++. . .+.+++.+.+.|+..++.|-
T Consensus 8 l~~~~l~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~--~--~~~~~i~~~~~d~~~l~~~~-- 79 (231)
T d1vl5a_ 8 MQIAALKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIE--G--NGHQQVEYVQGDAEQMPFTD-- 79 (231)
T ss_dssp HHHHTCCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHH--H--TTCCSEEEEECCC-CCCSCT--
T ss_pred HHhcCCCCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhccc--c--cccccccccccccccccccc--
Confidence 456788999999999999999999998775 6899999999999 777776 3 46678999999987643221
Q ss_pred CCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 237 SPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 237 sG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
| +.+ +.+...-+..+...+.+|+++.++|||||+++.++-+
T Consensus 80 -~-~fD--~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~ 120 (231)
T d1vl5a_ 80 -E-RFH--IVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS 120 (231)
T ss_dssp -T-CEE--EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -c-ccc--cccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 1 111 1122222333344557899999999999999987644
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=1.4e-11 Score=117.14 Aligned_cols=109 Identities=16% Similarity=0.102 Sum_probs=81.0
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccc------cc-cCc
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYD------TV-LDI 217 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~------~~-~g~ 217 (355)
+|..| +.+++..|+++||++|||+|||+|+.|.+||..++ .|+|+++|+++.++ +++|++++. .. ...
T Consensus 82 iypkD--~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~ 159 (324)
T d2b25a1 82 TFPKD--INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWP 159 (324)
T ss_dssp CCHHH--HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCC
T ss_pred ccccc--HHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccc
Confidence 45555 45777889999999999999999999999998764 59999999999999 888887321 00 012
Q ss_pred ceEEEEEecce--------------eeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEE-EEeCC
Q psy7769 218 HALKLVKVGGS--------------VVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVV-YSTCS 281 (355)
Q Consensus 218 ~~v~~~~~Da~--------------~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lV-YsTCS 281 (355)
.|+.+...|.. .+|.|- |+ +.|.++.+.|||||+|+ |+.|.
T Consensus 160 ~nv~~~~~di~~~~~~~~~~~fD~V~LD~p~--------------P~---------~~l~~~~~~LKpGG~lv~~~P~i 215 (324)
T d2b25a1 160 DNVDFIHKDISGATEDIKSLTFDAVALDMLN--------------PH---------VTLPVFYPHLKHGGVCAVYVVNI 215 (324)
T ss_dssp CCEEEEESCTTCCC-------EEEEEECSSS--------------TT---------TTHHHHGGGEEEEEEEEEEESSH
T ss_pred cceeEEecchhhcccccCCCCcceEeecCcC--------------HH---------HHHHHHHHhccCCCEEEEEeCCH
Confidence 56777776642 133332 22 45899999999999998 55554
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.16 E-value=6.4e-11 Score=107.13 Aligned_cols=106 Identities=13% Similarity=0.049 Sum_probs=72.8
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCc
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQ 240 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t 240 (355)
.++||++|||+|||+|..+.++|...+.|.|+|+|+|+.++ ++++.. . .+++.++..|+...+.+-....
T Consensus 71 ~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~--~----~~ni~~i~~d~~~~~~~~~~~~-- 142 (230)
T d1g8sa_ 71 PIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACA--E----RENIIPILGDANKPQEYANIVE-- 142 (230)
T ss_dssp CCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTT--T----CTTEEEEECCTTCGGGGTTTCC--
T ss_pred CCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHh--h----hcccceEEEeeccCcccccccc--
Confidence 47899999999999999999999987779999999999999 776665 2 2456677777765222211100
Q ss_pred cCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 241 NDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 241 ~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
+ +.+.-..+....+.+.++.++.++|||||.++.+.
T Consensus 143 -~--v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~ 178 (230)
T d1g8sa_ 143 -K--VDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAI 178 (230)
T ss_dssp -C--EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -e--eEEeeccccchHHHHHHHHHHHHhcccCceEEEEe
Confidence 0 00000001111112267999999999999988763
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=4e-11 Score=107.97 Aligned_cols=117 Identities=12% Similarity=0.045 Sum_probs=83.5
Q ss_pred chhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecce
Q psy7769 152 DGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGS 228 (355)
Q Consensus 152 D~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~ 228 (355)
+..-..++..+.++||++|||+|||+|+.+..+++..+ .+|+++|+|+.++ ++++.. . .|. +++++..+|+.
T Consensus 19 ~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~--~--~gl~~~v~~~~~d~~ 93 (245)
T d1nkva_ 19 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAE--E--LGVSERVHFIHNDAA 93 (245)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHH--H--TTCTTTEEEEESCCT
T ss_pred HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHH--H--hhccccchhhhhHHh
Confidence 44455677888999999999999999999999887653 7999999999999 677766 3 344 45889988876
Q ss_pred eeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 229 VVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 229 ~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
.+.+.= .-++.++...+....+.+.+|+++.+.|||||+++++.-
T Consensus 94 ~~~~~~-------~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 94 GYVANE-------KCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp TCCCSS-------CEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred hccccC-------ceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEec
Confidence 431110 001112222233333445789999999999999999753
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.09 E-value=7.7e-11 Score=108.34 Aligned_cols=115 Identities=7% Similarity=-0.092 Sum_probs=80.4
Q ss_pred hCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccCCCC
Q psy7769 162 LNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLSP 238 (355)
Q Consensus 162 L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG 238 (355)
..+.+|++|||+|||+|+.+..+++.. ..+|+|+|+++.++ ++++.. . .|. .++.+.++|+..+..|- |
T Consensus 63 ~~l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~--~--~gl~~~v~~~~~d~~~l~~~~---~ 134 (282)
T d2o57a1 63 GVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNN--Q--AGLADNITVKYGSFLEIPCED---N 134 (282)
T ss_dssp TCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHH--H--HTCTTTEEEEECCTTSCSSCT---T
T ss_pred cCCCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccc--c--ccccccccccccccccccccc---c
Confidence 467899999999999999999998865 36899999999999 666666 2 344 47899999986532221 0
Q ss_pred CccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCC
Q psy7769 239 IQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQN 287 (355)
Q Consensus 239 ~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~EN 287 (355)
+. ++.+....+........+|.++.++|||||++++++........
T Consensus 135 -sf--D~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 180 (282)
T d2o57a1 135 -SY--DFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGID 180 (282)
T ss_dssp -CE--EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCC
T ss_pred -cc--chhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeecCCCCc
Confidence 00 11122222233333447899999999999999998765544333
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.08 E-value=2.9e-10 Score=107.06 Aligned_cols=148 Identities=10% Similarity=-0.107 Sum_probs=95.0
Q ss_pred EechhcHHHHHhh-CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEec
Q psy7769 150 CMDGASLLPVLAL-NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVG 226 (355)
Q Consensus 150 ~QD~aS~l~~~~L-~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~D 226 (355)
-|-..-.+....+ ....|.+|||+|||+|+.++++|..+ ++|+++|.|+..+ +++|++ .+.....++++++.|
T Consensus 115 dqr~nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~G--A~V~~VD~s~~al~~a~~N~~--ln~~~~~~~~~i~~D 190 (309)
T d2igta1 115 EQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQV--LAGLEQAPIRWICED 190 (309)
T ss_dssp GGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHH--HHTCTTSCEEEECSC
T ss_pred chhHHHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhCC--CeEEEEeChHHHHHHHHHhhh--hhcccCCcEEEEeCC
Confidence 3656665555444 35678899999999999999988754 6899999999999 888887 311222457888766
Q ss_pred c----------------eeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHH
Q psy7769 227 G----------------SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGV 290 (355)
Q Consensus 227 a----------------~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~v 290 (355)
+ ..+|||+-+.| .+...|...+- +..++..+.++|+|||.++++||+-... ....
T Consensus 191 ~~~~l~~~~~~~~~fD~IilDPP~f~~~---~~~~~~~~~~~-----~~~l~~~~~~ll~~~g~~ll~t~~s~~~-s~~~ 261 (309)
T d2igta1 191 AMKFIQREERRGSTYDIILTDPPKFGRG---THGEVWQLFDH-----LPLMLDICREILSPKALGLVLTAYSIRA-SFYS 261 (309)
T ss_dssp HHHHHHHHHHHTCCBSEEEECCCSEEEC---TTCCEEEHHHH-----HHHHHHHHHHTBCTTCCEEEEEECCTTS-CHHH
T ss_pred HHHhHHHHhhcCCCCCEEEECCCccccc---ccchhHHHHHH-----HHHHHHHHHHhcCCCCCEEEEecCCCCC-CHHH
Confidence 5 34999984433 11122322211 1167888999999999877776644333 3334
Q ss_pred HHHHHHhhhhccCceEEEec
Q psy7769 291 VHMSLKRIWEETGCEIEIKD 310 (355)
Q Consensus 291 V~~~L~~~~~~~~~~~~~~~ 310 (355)
...++.......+..++...
T Consensus 262 ~~~~~~~~~~~ag~~v~~~e 281 (309)
T d2igta1 262 MHELMRETMRGAGGVVASGE 281 (309)
T ss_dssp HHHHHHHHTTTSCSEEEEEE
T ss_pred HHHHHHHHHHhcCCcceeeE
Confidence 44444443223444555443
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.07 E-value=1.7e-10 Score=100.68 Aligned_cols=127 Identities=15% Similarity=0.118 Sum_probs=87.9
Q ss_pred chhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee
Q psy7769 152 DGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV 229 (355)
Q Consensus 152 D~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~ 229 (355)
|.++.+.+..+.+.++++|||+|||+|..+.+++... .+|+++|+|+.++ +++|++... ....++.+...|...
T Consensus 38 d~~t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~--~~v~~iD~s~~~i~~a~~n~~~~~--l~~~~i~~~~~d~~~ 113 (194)
T d1dusa_ 38 DKGTKILVENVVVDKDDDILDLGCGYGVIGIALADEV--KSTTMADINRRAIKLAKENIKLNN--LDNYDIRVVHSDLYE 113 (194)
T ss_dssp CHHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTT--CTTSCEEEEECSTTT
T ss_pred CHHHHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhc--cccceeeeccccchhHHHHHHHhC--CccceEEEEEcchhh
Confidence 7788888899999999999999999999999988754 5899999999999 888877211 222457888877532
Q ss_pred ------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 230 ------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 230 ------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
.|.-.+... +++..+ ...++++++.++|||||.++...... .+...+..++++
T Consensus 114 ~~~~~~fD~Ii~~~p------~~~~~~------~~~~~l~~~~~~LkpgG~l~i~~~~~---~~~~~~~~~l~~ 172 (194)
T d1dusa_ 114 NVKDRKYNKIITNPP------IRAGKE------VLHRIIEEGKELLKDNGEIWVVIQTK---QGAKSLAKYMKD 172 (194)
T ss_dssp TCTTSCEEEEEECCC------STTCHH------HHHHHHHHHHHHEEEEEEEEEEEEST---HHHHHHHHHHHH
T ss_pred hhccCCceEEEEccc------EEecch------hhhhHHHHHHHhcCcCcEEEEEEeCc---CCHHHHHHHHHH
Confidence 222221000 111111 11278999999999999987754433 344555666654
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.06 E-value=7.5e-11 Score=105.20 Aligned_cols=98 Identities=14% Similarity=0.026 Sum_probs=74.0
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-----
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV----- 229 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~----- 229 (355)
...+|+++||++|||+|||+|..|..+|+.++ .++|+++|+++.++ ++++++ . .+..|+.++.+|+..
T Consensus 67 ~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~--~--~~~~n~~~~~~d~~~~~~~~ 142 (213)
T d1dl5a1 67 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVE--R--LGIENVIFVCGDGYYGVPEF 142 (213)
T ss_dssp HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHH--H--TTCCSEEEEESCGGGCCGGG
T ss_pred HHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHh--h--hcccccccccCchHHccccc
Confidence 45677899999999999999999999998774 58999999999999 888887 4 466788888888754
Q ss_pred --eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE
Q psy7769 230 --VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 230 --lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs 278 (355)
.|.-.++.+ .. .+....++.|||||+||..
T Consensus 143 ~~fD~I~~~~~----------~~---------~~p~~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 143 SPYDVIFVTVG----------VD---------EVPETWFTQLKEGGRVIVP 174 (213)
T ss_dssp CCEEEEEECSB----------BS---------CCCHHHHHHEEEEEEEEEE
T ss_pred cchhhhhhhcc----------HH---------HhHHHHHHhcCCCcEEEEE
Confidence 343332221 00 1123456679999999863
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.02 E-value=3.5e-10 Score=103.97 Aligned_cols=115 Identities=19% Similarity=0.128 Sum_probs=83.3
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEeccee-----------
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSV----------- 229 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~----------- 229 (355)
.++|++|||+|||+|+.++++|... .++|+|+|+++..+ +++|++ . .+. ++++++++|+..
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~--~--n~l~~~v~~~~~D~~~~~~~~~~D~Ii 179 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIH--L--NKVEDRMSAYNMDNRDFPGENIADRIL 179 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHH--H--TTCTTTEEEECSCTTTCCCCSCEEEEE
T ss_pred cCCccEEEECcceEcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHH--H--hCCCceEEEEEcchHHhccCCCCCEEE
Confidence 5789999999999999999999864 46999999999999 999998 3 344 358899999854
Q ss_pred eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE-eC--CCCCCCCHHHHHHHHHhhhhccCceE
Q psy7769 230 VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS-TC--SLSPIQNDGVVHMSLKRIWEETGCEI 306 (355)
Q Consensus 230 lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs-TC--Sl~~~ENE~vV~~~L~~~~~~~~~~~ 306 (355)
+++|+++ . +.|..|+++|++||.|.|. .| .....+..+.+..+... .|.++
T Consensus 180 ~~~p~~~-------------~---------~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~----~g~~v 233 (260)
T d2frna1 180 MGYVVRT-------------H---------EFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKE----YGYDV 233 (260)
T ss_dssp ECCCSSG-------------G---------GGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHH----TTCEE
T ss_pred ECCCCch-------------H---------HHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHH----cCCce
Confidence 3333311 0 4588899999999999653 22 33344555666666654 35555
Q ss_pred EEe
Q psy7769 307 EIK 309 (355)
Q Consensus 307 ~~~ 309 (355)
+..
T Consensus 234 ~~~ 236 (260)
T d2frna1 234 EKL 236 (260)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=98.99 E-value=3.3e-10 Score=100.54 Aligned_cols=121 Identities=15% Similarity=0.105 Sum_probs=86.1
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccCC
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDG 243 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~~ 243 (355)
++-.|||+|||+|..+.++|+..+...++|+|+++.++ +.++++ . .+..|+.++.+|+..+.- +-..+ +.+.
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~--~--~~l~Nv~~~~~Da~~l~~-~~~~~-~~d~ 102 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVK--D--SEAQNVKLLNIDADTLTD-VFEPG-EVKR 102 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHH--H--SCCSSEEEECCCGGGHHH-HCCTT-SCCE
T ss_pred CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHH--H--HhccCchhcccchhhhhc-ccCch-hhhc
Confidence 45589999999999999999998789999999999999 777776 3 467899999999876321 10111 1222
Q ss_pred c-cc----cchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 244 V-VH----MSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 244 ~-l~----~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
. +. |...+-...--++ +.|+.+.+.|||||.|+..| -++...++.++..
T Consensus 103 v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T------D~~~y~~~~~~~~ 157 (204)
T d2fcaa1 103 VYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT------DNRGLFEYSLKSF 157 (204)
T ss_dssp EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE------SCHHHHHHHHHHH
T ss_pred cccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE------CChHHHHHHHHHH
Confidence 1 11 4322222222233 88999999999999999988 6667666666654
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.94 E-value=5.4e-10 Score=97.61 Aligned_cols=100 Identities=9% Similarity=0.005 Sum_probs=70.4
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-------eeccc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV-------VYSTC 234 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~-------lDaPC 234 (355)
++++++|||+|||+|..+.++++.. ..|+|+|+|+.++ +++++. . .+ .++.++..|+.. .|.-+
T Consensus 35 l~~~~~ILDiGcG~G~~~~~la~~~--~~v~giD~S~~~i~~ak~~~~--~--~~-~~~~~~~~d~~~l~~~~~~fD~I~ 107 (226)
T d1ve3a1 35 MKKRGKVLDLACGVGGFSFLLEDYG--FEVVGVDISEDMIRKAREYAK--S--RE-SNVEFIVGDARKLSFEDKTFDYVI 107 (226)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHH--H--TT-CCCEEEECCTTSCCSCTTCEEEEE
T ss_pred cCCCCEEEEECCCcchhhhhHhhhh--cccccccccccchhhhhhhhc--c--cc-ccccccccccccccccCcCceEEE
Confidence 4688899999999999999999864 6899999999999 666665 2 22 235666777654 44433
Q ss_pred CCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 235 SLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 235 SgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
+... +.|-+. ..++++|+++.++|||||+++..+-+
T Consensus 108 ~~~~------l~~~~~-----~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 108 FIDS------IVHFEP-----LELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp EESC------GGGCCH-----HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred Eecc------hhhCCh-----hHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 2222 222110 12337899999999999999876543
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=98.90 E-value=1.3e-09 Score=96.65 Aligned_cols=106 Identities=11% Similarity=-0.060 Sum_probs=73.8
Q ss_pred CCCCCeEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-----eeccc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV-----VYSTC 234 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~-----lDaPC 234 (355)
.+|+.+|||+|||+|..|..|++.. ...+|+|+|+|+.++ ++++++ .+ ....++.+...|... .|.-.
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~--~~-~~~~~~~~~~~d~~~~~~~~~d~i~ 113 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIA--AY-HSEIPVEILCNDIRHVEIKNASMVI 113 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHH--TS-CCSSCEEEECSCTTTCCCCSEEEEE
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhH--hh-cccchhhhccchhhccccccceeeE
Confidence 4689999999999999999999865 246899999999999 777776 21 122456777777643 22222
Q ss_pred CCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 235 SLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 235 SgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
+... ++|-+ ..+.+.+|+++.+.|||||.++.++-+..
T Consensus 114 ~~~~------l~~~~-----~~d~~~~l~~i~~~LkpgG~li~~~~~~~ 151 (225)
T d1im8a_ 114 LNFT------LQFLP-----PEDRIALLTKIYEGLNPNGVLVLSEKFRF 151 (225)
T ss_dssp EESC------GGGSC-----GGGHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred Eeee------ccccC-----hhhHHHHHHHHHHhCCCCceeeccccccc
Confidence 1111 22211 11223789999999999999999876653
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.86 E-value=2.4e-09 Score=94.81 Aligned_cols=121 Identities=13% Similarity=0.073 Sum_probs=87.2
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCccCC
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDG 243 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~~ 243 (355)
.+..|||+|||.|..+.++|+..+...++++|+++.++ +.+++. . .+.+|+.+..+|+..+. ..-..+ +.+.
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~--~--~~l~Ni~~~~~da~~l~-~~~~~~-~~~~ 104 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVL--E--VGVPNIKLLWVDGSDLT-DYFEDG-EIDR 104 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHH--H--HCCSSEEEEECCSSCGG-GTSCTT-CCSE
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhh--h--hccccceeeecCHHHHh-hhccCC-ceeh
Confidence 34589999999999999999998778999999999999 666666 3 46789999999987643 111111 1121
Q ss_pred c-cc----cchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 244 V-VH----MSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 244 ~-l~----~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
. +. |...+-.+.--++ +.|....+.|||||.|.++| -++.-..+.++..
T Consensus 105 i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T------D~~~Y~~~~le~~ 159 (204)
T d1yzha1 105 LYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT------DNRGLFEYSLVSF 159 (204)
T ss_dssp EEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE------SCHHHHHHHHHHH
T ss_pred hcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE------CCccHHHHHHHHH
Confidence 1 11 4433333333344 89999999999999999988 5666666666544
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=98.84 E-value=4.1e-09 Score=89.47 Aligned_cols=108 Identities=11% Similarity=-0.106 Sum_probs=72.5
Q ss_pred HhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc------------ceEEEEEe
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI------------HALKLVKV 225 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~------------~~v~~~~~ 225 (355)
..|.+.||.+|||++||+|.-+..+|+.+ ..|+|+|+|+.++ ++++.+ . .+. .++.+...
T Consensus 14 ~~l~~~~~~rvLd~GCG~G~~a~~la~~G--~~V~gvD~S~~~i~~a~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~ 87 (201)
T d1pjza_ 14 SSLNVVPGARVLVPLCGKSQDMSWLSGQG--YHVVGAELSEAAVERYFTERG--E--QPHITSQGDFKVYAAPGIEIWCG 87 (201)
T ss_dssp HHHCCCTTCEEEETTTCCSHHHHHHHHHC--CEEEEEEECHHHHHHHHHHHC--S--CSEEEEETTEEEEECSSSEEEEE
T ss_pred HHcCCCCCCEEEEecCcCCHHHHHHHHcC--CceEeecccHHHHHHHHHHhc--c--ccchhhhhhhhhccccccceecc
Confidence 34678899999999999999999999875 7899999999999 666665 2 111 11234455
Q ss_pred ccee--------eecccCCCCCccCCcccc-chHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCC
Q psy7769 226 GGSV--------VYSTCSLSPIQNDGVVHM-SLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPI 285 (355)
Q Consensus 226 Da~~--------lDaPCSgsG~t~~~~l~~-~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ 285 (355)
|... .|+-.+... +.+ ..+ .....++++++.|||||.++..+.+..+.
T Consensus 88 d~~~l~~~~~~~~D~i~~~~~------l~~l~~~------~~~~~~~~i~~~LkpgG~l~l~~~~~~~~ 144 (201)
T d1pjza_ 88 DFFALTARDIGHCAAFYDRAA------MIALPAD------MRERYVQHLEALMPQACSGLLITLEYDQA 144 (201)
T ss_dssp CCSSSTHHHHHSEEEEEEESC------GGGSCHH------HHHHHHHHHHHHSCSEEEEEEEEESSCSS
T ss_pred cccccccccccceeEEEEEee------eEecchh------hhHHHHHHHHHhcCCCcEEEEEEcccccc
Confidence 5432 333221111 111 111 12278999999999999988877666443
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=98.84 E-value=3.2e-09 Score=95.79 Aligned_cols=103 Identities=14% Similarity=0.152 Sum_probs=72.6
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEeccee--------eec
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSV--------VYS 232 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~--------lDa 232 (355)
.++|.+|||+|||+|+-+..++... .+.|+|+|+|+.++ ++++.+ . .+. .++.+...|+.. .|+
T Consensus 22 ~~~~~~VLDlGCG~G~~~~~~~~~~-~~~v~GiD~S~~~l~~A~~r~~--~--~~~~~~v~f~~~D~~~~~~~~~~~fD~ 96 (252)
T d1ri5a_ 22 TKRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRAR--N--MKRRFKVFFRAQDSYGRHMDLGKEFDV 96 (252)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHH--T--SCCSSEEEEEESCTTTSCCCCSSCEEE
T ss_pred CCCcCEEEEecccCcHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHH--h--cCCCcceEEEEcchhhhcccccccceE
Confidence 4689999999999999998887753 36899999999999 776665 2 222 478898888732 555
Q ss_pred ccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 233 TCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 233 PCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
.++..+ +++-... ...+..+|.++.++|||||+++.++-
T Consensus 97 V~~~~~------l~~~~~~---~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 97 ISSQFS------FHYAFST---SESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp EEEESC------GGGGGSS---HHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEcce------eeecCCC---HHHHHHHHHHHhceeCCCCEEEEEec
Confidence 543322 2221100 01122789999999999999998764
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=98.82 E-value=4e-09 Score=96.50 Aligned_cols=120 Identities=13% Similarity=0.080 Sum_probs=82.0
Q ss_pred chhcHHHHHhhC--CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc
Q psy7769 152 DGASLLPVLALN--IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG 227 (355)
Q Consensus 152 D~aS~l~~~~L~--~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da 227 (355)
.+...++..+|. .+||++|||+|||+|..+..++..+ .+|+|+|+|+.++ +++|++ . .+. ++++..+|.
T Consensus 104 H~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g--~~V~gvDis~~av~~A~~na~--~--n~~-~~~~~~~d~ 176 (254)
T d2nxca1 104 HETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLG--GKALGVDIDPMVLPQAEANAK--R--NGV-RPRFLEGSL 176 (254)
T ss_dssp SHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCGGGHHHHHHHHH--H--TTC-CCEEEESCH
T ss_pred cchhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhcC--CEEEEEECChHHHHHHHHHHH--H--cCC-ceeEEeccc
Confidence 456677777764 6899999999999999988877654 6899999999999 888887 3 243 346666664
Q ss_pred ee------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 228 SV------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 228 ~~------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
.. .|...+ .+.... +.+++..+.+.|||||+++.|.= . .+....|...+++
T Consensus 177 ~~~~~~~~fD~V~a----------ni~~~~------l~~l~~~~~~~LkpGG~lilSgi--l-~~~~~~v~~~~~~ 233 (254)
T d2nxca1 177 EAALPFGPFDLLVA----------NLYAEL------HAALAPRYREALVPGGRALLTGI--L-KDRAPLVREAMAG 233 (254)
T ss_dssp HHHGGGCCEEEEEE----------ECCHHH------HHHHHHHHHHHEEEEEEEEEEEE--E-GGGHHHHHHHHHH
T ss_pred cccccccccchhhh----------cccccc------HHHHHHHHHHhcCCCcEEEEEec--c-hhhHHHHHHHHHH
Confidence 32 222210 011111 12678889999999999998742 2 2445555555654
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.80 E-value=3.9e-09 Score=94.06 Aligned_cols=101 Identities=11% Similarity=0.012 Sum_probs=72.9
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceee------ecc-
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVV------YST- 233 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~l------DaP- 233 (355)
...++.+|||+|||+|..+..+++.. ..|+|+|+|+.++ +++++. . .+ .++.+.++|+..+ |.-
T Consensus 38 ~~~~~~~iLDiGcGtG~~~~~l~~~~--~~v~gvD~s~~mi~~a~~~~~--~--~~-~~i~~~~~d~~~l~~~~~fD~I~ 110 (251)
T d1wzna1 38 AKREVRRVLDLACGTGIPTLELAERG--YEVVGLDLHEEMLRVARRKAK--E--RN-LKIEFLQGDVLEIAFKNEFDAVT 110 (251)
T ss_dssp CSSCCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHH--H--TT-CCCEEEESCGGGCCCCSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCccchhhcccc--eEEEEEeeccccccccccccc--c--cc-ccchheehhhhhcccccccchHh
Confidence 45667799999999999999999865 5899999999999 777776 2 12 2578888988653 322
Q ss_pred cCCCCCccCCccc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 234 CSLSPIQNDGVVH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 234 CSgsG~t~~~~l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
|++.. +. ++. ...++.|+++.+.|||||+++.....+
T Consensus 111 ~~~~~------~~~~~~------~~~~~~L~~~~~~LkpgG~lii~~~~~ 148 (251)
T d1wzna1 111 MFFST------IMYFDE------EDLRKLFSKVAEALKPGGVFITDFPCW 148 (251)
T ss_dssp ECSSG------GGGSCH------HHHHHHHHHHHHHEEEEEEEEEEEEC-
T ss_pred hhhhh------hhcCCh------HHHHHHHHHHHHHcCCCcEEEEEeccc
Confidence 21111 11 111 122378999999999999999987654
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.79 E-value=3.3e-09 Score=95.38 Aligned_cols=95 Identities=13% Similarity=0.102 Sum_probs=70.7
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-----
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV----- 229 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~----- 229 (355)
.....|++++|++|||++||+|..|..||.+. ++|+++|+++..+ +++++. ...|+.++.+|+..
T Consensus 61 ~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~------~~~nv~~~~~d~~~g~~~~ 132 (224)
T d1vbfa_ 61 FMLDELDLHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLS------YYNNIKLILGDGTLGYEEE 132 (224)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHT------TCSSEEEEESCGGGCCGGG
T ss_pred HHHHHhhhcccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHh------cccccccccCchhhcchhh
Confidence 34577899999999999999999999999886 7999999999999 666665 23578999988754
Q ss_pred --eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE
Q psy7769 230 --VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 230 --lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs 278 (355)
.|+-..+.++ ..+....++.|||||+||.-
T Consensus 133 ~pfD~Iiv~~a~-------------------~~ip~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 133 KPYDRVVVWATA-------------------PTLLCKPYEQLKEGGIMILP 164 (224)
T ss_dssp CCEEEEEESSBB-------------------SSCCHHHHHTEEEEEEEEEE
T ss_pred hhHHHHHhhcch-------------------hhhhHHHHHhcCCCCEEEEE
Confidence 3333211110 01233455789999999973
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=1.2e-08 Score=90.70 Aligned_cols=132 Identities=8% Similarity=-0.166 Sum_probs=83.6
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccc-------------cccCcceEEE
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYD-------------TVLDIHALKL 222 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~-------------~~~g~~~v~~ 222 (355)
...++.+.+|.+|||+|||.|.-+..||+.+ ..|+|+|+|+..+ ++++..... +.....++.+
T Consensus 37 ~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G--~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 114 (229)
T d2bzga1 37 LDTFLKGKSGLRVFFPLCGKAVEMKWFADRG--HSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISL 114 (229)
T ss_dssp HHHHHTTCCSCEEEETTCTTCTHHHHHHHTT--CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEE
T ss_pred HHHhcCCCCCCEEEEeCCCCcHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEE
Confidence 3455678899999999999999999999876 6899999999999 554433100 0000134677
Q ss_pred EEecceeeecccCCC-CCccCCc-cc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCC--------CHHHH
Q psy7769 223 VKVGGSVVYSTCSLS-PIQNDGV-VH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQ--------NDGVV 291 (355)
Q Consensus 223 ~~~Da~~lDaPCSgs-G~t~~~~-l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~E--------NE~vV 291 (355)
.+.|...+++.-.+. -...+.. ++ ..++. .+..+++..++|||||++++.+++..+.+ .++.+
T Consensus 115 ~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~------r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp~~~~~~el 188 (229)
T d2bzga1 115 YCCSIFDLPRTNIGKFDMIWDRGALVAINPGD------RKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPPFYVPHAEI 188 (229)
T ss_dssp EESCGGGGGGSCCCCEEEEEESSSTTTSCGGG------HHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSSCCCCHHHH
T ss_pred EEcchhhccccccCceeEEEEEEEEEeccchh------hHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCCCCCCHHHH
Confidence 777764422211000 0000111 11 22221 12678999999999999999999876544 45567
Q ss_pred HHHHHh
Q psy7769 292 HMSLKR 297 (355)
Q Consensus 292 ~~~L~~ 297 (355)
..++..
T Consensus 189 ~~lf~~ 194 (229)
T d2bzga1 189 ERLFGK 194 (229)
T ss_dssp HHHHTT
T ss_pred HHHhcC
Confidence 777653
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=98.77 E-value=2.8e-09 Score=95.36 Aligned_cols=98 Identities=16% Similarity=0.129 Sum_probs=69.1
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee------eecc-cCC
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------VYST-CSL 236 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------lDaP-CSg 236 (355)
++.+|||+|||+|..+..+++.+ ..|+|+|.|+.++ +++++. . .+ .++.++++|+.. .|.. |.+
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~--~--~~-~~v~~~~~d~~~~~~~~~fD~i~~~~ 109 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFR--S--QG-LKPRLACQDISNLNINRKFDLITCCL 109 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHH--H--TT-CCCEEECCCGGGCCCSCCEEEEEECT
T ss_pred CCCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhcccccc--c--cC-ccceeeccchhhhcccccccccceee
Confidence 45699999999999999999875 5899999999999 677665 2 23 257888888764 3421 211
Q ss_pred CCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 237 SPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 237 sG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
.. + .-+.....++.+|+++.++|||||.+++..-
T Consensus 110 ~~------~----~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 110 DS------T----NYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp TG------G----GGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ee------e----eccCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 10 0 0011112333789999999999999998653
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.77 E-value=8e-09 Score=95.56 Aligned_cols=110 Identities=14% Similarity=0.080 Sum_probs=76.8
Q ss_pred HHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeec
Q psy7769 156 LLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYS 232 (355)
Q Consensus 156 ~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDa 232 (355)
...+..|+++||++|||+|||.|+.+.++++..+ ..|+++|+|+..+ ++++++ . .+. .++.+...|...++-
T Consensus 42 ~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~--~--~~l~~~~~~~~~d~~~~~~ 116 (280)
T d2fk8a1 42 DLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLA--S--IDTNRSRQVLLQGWEDFAE 116 (280)
T ss_dssp HHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHH--T--SCCSSCEEEEESCGGGCCC
T ss_pred HHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHH--h--hccccchhhhhhhhhhhcc
Confidence 3556667899999999999999999999988764 6999999999999 777776 3 233 346666666543221
Q ss_pred ccCCCCCccCCccccchHHHHhhh--hHHHHHHHHHhhccCCcEEEEEe
Q psy7769 233 TCSLSPIQNDGVVHMSLKRIWEET--GCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 233 PCSgsG~t~~~~l~~~~~~l~~l~--~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
+ .+.- ++-+.+.... .++..++.+.++|||||+++..|
T Consensus 117 ~-------fD~i--~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 117 P-------VDRI--VSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp C-------CSEE--EEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred c-------hhhh--hHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence 1 1111 1111122222 23478999999999999999876
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=3.5e-09 Score=95.01 Aligned_cols=98 Identities=15% Similarity=0.083 Sum_probs=69.6
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhcccccc-ccCcceEEEEEeccee-------ee
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDT-VLDIHALKLVKVGGSV-------VY 231 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~-~~g~~~v~~~~~Da~~-------lD 231 (355)
+++||++|||+|||+|..|+.+|++.+ .|+|+++|+++..+ +++++++... ..+..++.+..+|+.. .|
T Consensus 73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD 152 (224)
T d1i1na_ 73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYD 152 (224)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhh
Confidence 789999999999999999999999875 58999999999999 7788763210 0123567888888754 22
Q ss_pred cccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 232 STCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 232 aPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
.--.+.+ . .++....++.|||||+||...
T Consensus 153 ~I~~~~~----------~---------~~ip~~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 153 AIHVGAA----------A---------PVVPQALIDQLKPGGRLILPV 181 (224)
T ss_dssp EEEECSB----------B---------SSCCHHHHHTEEEEEEEEEEE
T ss_pred hhhhhcc----------h---------hhcCHHHHhhcCCCcEEEEEE
Confidence 2211111 0 022345678899999999743
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.77 E-value=9.2e-09 Score=95.52 Aligned_cols=118 Identities=14% Similarity=0.041 Sum_probs=85.0
Q ss_pred echhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecc
Q psy7769 151 MDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGG 227 (355)
Q Consensus 151 QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da 227 (355)
|+.---+++..|+++||++|||++||-|+.+.++|...+ .+|+++.+|+..+ +++++.+ .+. .++.+...|.
T Consensus 47 Q~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g-~~v~git~s~~Q~~~a~~~~~~----~g~~~~v~~~~~d~ 121 (285)
T d1kpga_ 47 QIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVAN----SENLRSKRVLLAGW 121 (285)
T ss_dssp HHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHT----CCCCSCEEEEESCG
T ss_pred HHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCC-cceEEEeccHHHHHHHHHHHHh----hhhhhhhHHHHhhh
Confidence 444455777888999999999999999999999998764 7999999999999 6676662 233 5788888887
Q ss_pred eeeecccCCCCCccCCccccchHHHHhhh--hHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 228 SVVYSTCSLSPIQNDGVVHMSLKRIWEET--GCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 228 ~~lDaPCSgsG~t~~~~l~~~~~~l~~l~--~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
..++.+ .++- ++-+.+.... +.+..++.+.++|||||+++..|.+.
T Consensus 122 ~~~~~~-------fD~i--~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~ 169 (285)
T d1kpga_ 122 EQFDEP-------VDRI--VSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITG 169 (285)
T ss_dssp GGCCCC-------CSEE--EEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred hccccc-------ccce--eeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEec
Confidence 654322 1111 1111122221 23378999999999999999877653
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=4.5e-09 Score=92.94 Aligned_cols=106 Identities=14% Similarity=-0.046 Sum_probs=72.8
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCc
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQ 240 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t 240 (355)
...++.+|||+|||+|..+..++.... .+|+++|+|+.++ +++++. . .+..++.+.++|+..++.+-. .
T Consensus 57 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~--~--~~~~~~~f~~~d~~~~~~~~~----~ 127 (222)
T d2ex4a1 57 NKTGTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLG--E--EGKRVRNYFCCGLQDFTPEPD----S 127 (222)
T ss_dssp -CCCCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTG--G--GGGGEEEEEECCGGGCCCCSS----C
T ss_pred CCCCCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhccccccc--c--ccccccccccccccccccccc----c
Confidence 456788999999999999988765442 5899999999999 777776 3 456788999999866443210 0
Q ss_pred cCCccccchHHHHhhhh--HHHHHHHHHhhccCCcEEEEEe
Q psy7769 241 NDGVVHMSLKRIWEETG--CEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 241 ~~~~l~~~~~~l~~l~~--lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
. ++.+...-+..+.. +.++|+++.++|||||.++.++
T Consensus 128 f--D~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~ 166 (222)
T d2ex4a1 128 Y--DVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKD 166 (222)
T ss_dssp E--EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c--cccccccccccchhhhhhhHHHHHHHhcCCcceEEEEE
Confidence 0 01111111112211 2278999999999999999874
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=98.75 E-value=1.1e-08 Score=88.86 Aligned_cols=108 Identities=13% Similarity=-0.025 Sum_probs=72.5
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCc
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQ 240 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t 240 (355)
.+++| +|||++||.|..+..+++.+ .+|+|+|+|+.++ ++++.. . .+..++.+...|.....++=+=..+.
T Consensus 28 ~~~~g-rvLDiGcG~G~~~~~la~~g--~~v~gvD~s~~~l~~a~~~~~--~--~~~~~~~~~~~d~~~~~~~~~fD~I~ 100 (198)
T d2i6ga1 28 VVAPG-RTLDLGCGNGRNSLYLAANG--YDVTAWDKNPASMANLERIKA--A--EGLDNLQTDLVDLNTLTFDGEYDFIL 100 (198)
T ss_dssp TSCSC-EEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHH--H--TTCTTEEEEECCTTTCCCCCCEEEEE
T ss_pred cCCCC-cEEEECCCCCHHHHHHHHHh--hhhccccCcHHHHHHHHHHhh--h--ccccchhhhheecccccccccccEEE
Confidence 34555 99999999999999999875 6899999999999 666666 3 46677888888865422211000000
Q ss_pred cCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 241 NDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 241 ~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
....+.+-+. ...+.+|+++.++|+|||++++++..-
T Consensus 101 ~~~~~~~~~~-----~~~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 101 STVVMMFLEA-----QTIPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp EESCGGGSCT-----THHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred EeeeeecCCH-----HHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 0000111110 123378999999999999999987764
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=3e-09 Score=95.05 Aligned_cols=97 Identities=14% Similarity=0.021 Sum_probs=67.4
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-------------
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------------- 229 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------------- 229 (355)
.+|.+|||+|||+|..+..++... ..+|+++|+|+.++ ++++.. . ...++.+...|+..
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~-~~~v~~id~s~~~~~~a~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~fD~i 125 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAP--R---QTHKVIPLKGLWEDVAPTLPDGHFDGI 125 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGG--G---CSSEEEEEESCHHHHGGGSCTTCEEEE
T ss_pred cCCCeEEEeeccchHHHHHHHHcC-CCeEEEeCCCHHHHHHHHHHhh--h---cccccccccccccccccccccccccce
Confidence 679999999999999999988753 36899999999999 777776 2 12345565555432
Q ss_pred -eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 230 -VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 230 -lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
+|+..+. ..+.........++++.++|||||+++|.++
T Consensus 126 ~fD~~~~~-------------~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~ 164 (229)
T d1zx0a1 126 LYDTYPLS-------------EETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 164 (229)
T ss_dssp EECCCCCB-------------GGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred eecccccc-------------cccccccCHHHHHHHHHHHcCCCcEEEEEec
Confidence 3333211 1122222222789999999999999998643
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.73 E-value=9.2e-09 Score=91.85 Aligned_cols=69 Identities=12% Similarity=0.091 Sum_probs=60.3
Q ss_pred HHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee
Q psy7769 156 LLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV 229 (355)
Q Consensus 156 ~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~ 229 (355)
+....+|++++|++|||++||+|..|+.||.+.+ ++|+++|.++... ++++++ . .+..|+.++++|+..
T Consensus 68 a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~--~--~g~~nv~~~~gd~~~ 138 (215)
T d1jg1a_ 68 AIMLEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLE--R--AGVKNVHVILGDGSK 138 (215)
T ss_dssp HHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHH--H--TTCCSEEEEESCGGG
T ss_pred HHHHHhhccCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHH--H--cCCceeEEEECcccc
Confidence 4457788999999999999999999999998874 6899999999988 888888 4 577899999999865
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.71 E-value=1.8e-08 Score=93.84 Aligned_cols=116 Identities=16% Similarity=0.046 Sum_probs=81.1
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeee
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVY 231 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lD 231 (355)
--+.+..|++++|++|||++||-|+.+.++|+..+ .+|+++++|+..+ ++++++. .+. ..+.+...|....|
T Consensus 50 ~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~----~~l~~~v~~~~~d~~~~~ 124 (291)
T d1kpia_ 50 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDE----VDSPRRKEVRIQGWEEFD 124 (291)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHH----SCCSSCEEEEECCGGGCC
T ss_pred HHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHh----hccchhhhhhhhcccccc
Confidence 44567778999999999999999999999998764 7999999999998 6666652 233 34666666654322
Q ss_pred cccCCCCCccCCccccchHHHHhh---------hhHHHHHHHHHhhccCCcEEEEEeCCCCC
Q psy7769 232 STCSLSPIQNDGVVHMSLKRIWEE---------TGCEIEIKHALKLVKVGGSVVYSTCSLSP 284 (355)
Q Consensus 232 aPCSgsG~t~~~~l~~~~~~l~~l---------~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~ 284 (355)
.+. ++- ++.+.+.+. .+.+..++.+.++|||||+++..|.++..
T Consensus 125 ~~f-------D~i--~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~ 177 (291)
T d1kpia_ 125 EPV-------DRI--VSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPD 177 (291)
T ss_dssp CCC-------SEE--EEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCC
T ss_pred ccc-------ceE--eechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccC
Confidence 211 111 111222222 12348999999999999999998887643
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.70 E-value=1.9e-08 Score=87.55 Aligned_cols=116 Identities=18% Similarity=0.104 Sum_probs=80.3
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEE------------
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVK------------ 224 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~------------ 224 (355)
...|.+++|+.++|+|+|.||.|..+++. .|+|+|+|.++..+ +++... +++.+++
T Consensus 11 l~~l~~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~~--------~~~~~~~~~f~~~~~~l~~ 80 (182)
T d1wg8a2 11 LDLLAVRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHL--------PGLTVVQGNFRHLKRHLAA 80 (182)
T ss_dssp HHHHTCCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCC--------TTEEEEESCGGGHHHHHHH
T ss_pred HHhcCCCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhccc--------cceeEeehHHHHHHHHHHH
Confidence 45678999999999999999999998875 48999999999998 433221 1233333
Q ss_pred -----ecceeeecccCCCCCccCCccccchHH-HHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 225 -----VGGSVVYSTCSLSPIQNDGVVHMSLKR-IWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 225 -----~Da~~lDaPCSgsG~t~~~~l~~~~~~-l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
.|+..+|.-+|..++ +. -.++..++..|..+..++++||++++.|..- .| +..|..++++
T Consensus 81 ~~~~~vdgIl~DLGvSs~ql----------d~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs--~E-d~ivk~~~~e 146 (182)
T d1wg8a2 81 LGVERVDGILADLGVSSFHL----------DDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS--LE-DRVVKRFLRE 146 (182)
T ss_dssp TTCSCEEEEEEECSCCHHHH----------HCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH--HH-HHHHHHHHHH
T ss_pred cCCCccCEEEEEccCCHHHh----------hcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc--ch-hHHHHHHHhh
Confidence 344456654433321 11 1222333388999999999999999988643 34 4677777775
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=98.68 E-value=1.3e-08 Score=89.62 Aligned_cols=93 Identities=10% Similarity=-0.005 Sum_probs=64.3
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-------eeccc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV-------VYSTC 234 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~-------lDaPC 234 (355)
..++.+|||+|||+|..+..++..+ .+|+|+|+|+.++ ++++.. . .++.+|+.. .|.-.
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~giD~s~~~l~~a~~~~~--~--------~~~~~~~~~l~~~~~~fD~ii 107 (246)
T d2avna1 40 LKNPCRVLDLGGGTGKWSLFLQERG--FEVVLVDPSKEMLEVAREKGV--K--------NVVEAKAEDLPFPSGAFEAVL 107 (246)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHTTT--CEEEEEESCHHHHHHHHHHTC--S--------CEEECCTTSCCSCTTCEEEEE
T ss_pred cCCCCEEEEECCCCchhcccccccc--eEEEEeecccccccccccccc--c--------cccccccccccccccccccee
Confidence 4477899999999999999998864 6899999999999 665543 1 133445432 33221
Q ss_pred CCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 235 SLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 235 SgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
+.. .-+..+....++|+++.++|||||.++.++-
T Consensus 108 ~~~------------~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 108 ALG------------DVLSYVENKDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp ECS------------SHHHHCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eec------------chhhhhhhHHHHHHHHHhhcCcCcEEEEEEC
Confidence 100 1122223333789999999999999998864
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=98.67 E-value=9e-09 Score=94.70 Aligned_cols=118 Identities=15% Similarity=0.048 Sum_probs=81.0
Q ss_pred echhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCC-CcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc
Q psy7769 151 MDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYP-DYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG 227 (355)
Q Consensus 151 QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~-g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da 227 (355)
.|..+-++-.+..+..+.+|||+|||+|..+..++...+. ++|+++|+|+.++ +++++. . .+. ++.+...|+
T Consensus 12 ~d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~--~--~~~-~~~f~~~d~ 86 (281)
T d2gh1a1 12 DDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFR--L--LPY-DSEFLEGDA 86 (281)
T ss_dssp HHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHH--S--SSS-EEEEEESCT
T ss_pred HHHHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccc--c--ccc-ccccccccc
Confidence 3444445555556777889999999999999999987654 6899999999999 777777 3 233 688888887
Q ss_pred eeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 228 SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 228 ~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
..++.+- . -++.+...-+..+...+.+|+++.+.|||||.++..+.
T Consensus 87 ~~~~~~~-----~--fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 87 TEIELND-----K--YDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp TTCCCSS-----C--EEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ccccccC-----C--ceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 6532221 0 01111111122233334789999999999999987663
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.66 E-value=1e-08 Score=94.39 Aligned_cols=117 Identities=11% Similarity=0.015 Sum_probs=71.3
Q ss_pred HHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee----
Q psy7769 156 LLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV---- 229 (355)
Q Consensus 156 ~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~---- 229 (355)
.+....|..+++.+|||+|||+|..+..+|+.+ ..|+|+|+|+.++ ++++....+.........+...|...
T Consensus 46 ~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g--~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (292)
T d1xvaa_ 46 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD 123 (292)
T ss_dssp HHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH
T ss_pred HHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcC--CeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccc
Confidence 345566777788899999999999999999874 5899999999999 66655411100001122333333221
Q ss_pred ------ee-cccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 230 ------VY-STCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 230 ------lD-aPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
.| +-|.+.. +.+-+........+..+|+++.++|||||+++..+.
T Consensus 124 ~~~~~~fd~v~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 124 VPAGDGFDAVICLGNS------FAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp SCCTTCEEEEEECSSC------GGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCCCceEEEEecCc------hhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 22 3342221 110000000111223789999999999999999764
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.58 E-value=6.5e-08 Score=91.36 Aligned_cols=96 Identities=17% Similarity=0.138 Sum_probs=73.4
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce-------
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS------- 228 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~------- 228 (355)
+...+++.++++|||++||.|..|+.||... .+|+|+|.++..+ +++|++ . .++.|+.++.+|..
T Consensus 204 v~~~~~~~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~na~--~--n~i~n~~~~~~~~~~~~~~~~ 277 (358)
T d1uwva2 204 ALEWLDVQPEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQNAR--L--NGLQNVTFYHENLEEDVTKQP 277 (358)
T ss_dssp HHHHHTCCTTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHHHH--H--TTCCSEEEEECCTTSCCSSSG
T ss_pred HHHhhccCCCceEEEecccccccchhccccc--cEEEeccCcHHHHHHHHHhHH--h--cccccceeeecchhhhhhhhh
Confidence 3455678899999999999999999998765 7899999999999 888988 3 57788888876542
Q ss_pred ---------eeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 229 ---------VVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 229 ---------~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
.+|||=+|.+ +.+...++ ++| -+|||..|-.
T Consensus 278 ~~~~~~d~vilDPPR~G~~---------------------~~~~~l~~-~~~-~~ivYVSCnp 317 (358)
T d1uwva2 278 WAKNGFDKVLLDPARAGAA---------------------GVMQQIIK-LEP-IRIVYVSCNP 317 (358)
T ss_dssp GGTTCCSEEEECCCTTCCH---------------------HHHHHHHH-HCC-SEEEEEESCH
T ss_pred hhhccCceEEeCCCCccHH---------------------HHHHHHHH-cCC-CEEEEEeCCH
Confidence 3888876643 22333333 356 4999999964
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=98.58 E-value=5.4e-08 Score=88.24 Aligned_cols=110 Identities=14% Similarity=-0.001 Sum_probs=76.0
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeeccc
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTC 234 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPC 234 (355)
.....+.+.++.+|||++||+|..|.+++.... ..|+++|.++.++ +++++. +.+++.+.+.|...++.+-
T Consensus 84 ~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~-~~v~~vD~s~~~l~~a~~~~~------~~~~~~~~~~d~~~~~~~~ 156 (254)
T d1xtpa_ 84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKLY-ATTDLLEPVKHMLEEAKRELA------GMPVGKFILASMETATLPP 156 (254)
T ss_dssp HHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHC-SEEEEEESCHHHHHHHHHHTT------TSSEEEEEESCGGGCCCCS
T ss_pred HHHhhCCCCCCCeEEEecccCChhhHHHHhhcC-ceEEEEcCCHHHHHhhhcccc------ccccceeEEccccccccCC
Confidence 334455566788999999999999999887653 4799999999999 666665 3356788888875543321
Q ss_pred CCCCCccCCccccchHHHHhhhhHH--HHHHHHHhhccCCcEEEEEe
Q psy7769 235 SLSPIQNDGVVHMSLKRIWEETGCE--IEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 235 SgsG~t~~~~l~~~~~~l~~l~~lQ--~lL~~A~~~LkpGG~lVYsT 279 (355)
..-++.|...-+..+..-+ ++|+++.+.|||||.|+.+.
T Consensus 157 ------~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e 197 (254)
T d1xtpa_ 157 ------NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKE 197 (254)
T ss_dssp ------SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------CccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEe
Confidence 0111223322333333333 78999999999999999864
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=98.57 E-value=3e-08 Score=90.56 Aligned_cols=95 Identities=16% Similarity=0.069 Sum_probs=66.5
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCcc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQN 241 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~ 241 (355)
+.++.+|||+|||+|..+.++++......++++|+|+.++ ++++.. ++.+..+|+..++.+- + +.
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~---------~~~~~~~d~~~l~~~~---~-sf 148 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP---------QVTFCVASSHRLPFSD---T-SM 148 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT---------TSEEEECCTTSCSBCT---T-CE
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccc---------cccceeeehhhccCCC---C-CE
Confidence 5678899999999999999999988778999999999999 544433 3567778875432221 0 11
Q ss_pred CCccc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 242 DGVVH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 242 ~~~l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
+.-+. +.+. .++++.++|||||.++++|-.
T Consensus 149 D~v~~~~~~~----------~~~e~~rvLkpgG~l~~~~p~ 179 (268)
T d1p91a_ 149 DAIIRIYAPC----------KAEELARVVKPGGWVITATPG 179 (268)
T ss_dssp EEEEEESCCC----------CHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEeecCCHH----------HHHHHHHHhCCCcEEEEEeeC
Confidence 11011 1121 145678899999999998854
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.55 E-value=9.3e-08 Score=88.17 Aligned_cols=125 Identities=11% Similarity=-0.029 Sum_probs=83.7
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-----------ee
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV-----------VY 231 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~-----------lD 231 (355)
..+.+|||+|||+|..++.+|...+...|+|+|+|+..+ +++|++ . .+..++.++..|... ..
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~--~--~~~~~v~~~~~d~~~~~~~~~fDlIvsN 182 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQ--H--LAIKNIHILQSDWFSALAGQQFAMIVSN 182 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHH--H--HTCCSEEEECCSTTGGGTTCCEEEEEEC
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHH--H--hCcccceeeecccccccCCCceeEEEec
Confidence 456689999999999999999988779999999999999 899998 4 455678888877532 55
Q ss_pred cccCCCCC-ccCCc-cccchHH-----HHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 232 STCSLSPI-QNDGV-VHMSLKR-----IWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 232 aPCSgsG~-t~~~~-l~~~~~~-----l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
||.-...- ..... +++.|.. ..-+.-+.+++..+.++|+|||.+++-. .. .....|..++++
T Consensus 183 PPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEi---g~-~q~~~v~~~l~~ 251 (274)
T d2b3ta1 183 PPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH---GW-QQGEAVRQAFIL 251 (274)
T ss_dssp CCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC---CS-SCHHHHHHHHHH
T ss_pred chhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEE---Cc-hHHHHHHHHHHH
Confidence 66522110 00000 1122211 0111112289999999999999999842 22 345566666654
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=1.3e-07 Score=89.08 Aligned_cols=107 Identities=12% Similarity=0.023 Sum_probs=75.2
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcccc-----ccccCcceEEEEEeccee-
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPY-----DTVLDIHALKLVKVGGSV- 229 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~-----~~~~g~~~v~~~~~Da~~- 229 (355)
....++++++++|||+|||.|..+.++|...+..+++|+|+++.++ ++++++.+ .+.....++.+.++|+..
T Consensus 143 ~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~ 222 (328)
T d1nw3a_ 143 MIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSE 222 (328)
T ss_dssp HHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSH
T ss_pred HHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccc
Confidence 3456689999999999999999999999877667899999999998 44444311 100123578999999854
Q ss_pred --------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE
Q psy7769 230 --------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 230 --------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs 278 (355)
.|+.+... +.+.++ +...|.+.++.|||||+||-+
T Consensus 223 ~~~~~~~~advi~~~~-------~~f~~~-------~~~~l~e~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 223 EWRERIANTSVIFVNN-------FAFGPE-------VDHQLKERFANMKEGGRIVSS 265 (328)
T ss_dssp HHHHHHHHCSEEEECC-------TTTCHH-------HHHHHHHHHTTCCTTCEEEES
T ss_pred ccccccCcceEEEEcc-------eecchH-------HHHHHHHHHHhCCCCcEEEEe
Confidence 34444211 112222 225688899999999999854
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=98.52 E-value=1.3e-07 Score=85.23 Aligned_cols=112 Identities=12% Similarity=-0.009 Sum_probs=78.6
Q ss_pred HHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEeccee---
Q psy7769 156 LLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSV--- 229 (355)
Q Consensus 156 ~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~--- 229 (355)
..++..++.....+|||+|||+|..+..+++..+..+++++|+ +..+ +++++. . .+. .++.++.+|...
T Consensus 70 ~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~--~--~~~~~rv~~~~~D~~~~~~ 144 (253)
T d1tw3a2 70 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLK--D--EGLSDRVDVVEGDFFEPLP 144 (253)
T ss_dssp HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHH--H--TTCTTTEEEEECCTTSCCS
T ss_pred HHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHH--H--hhcccchhhccccchhhcc
Confidence 3445666777788999999999999999999887789999998 4556 777776 2 233 578999988743
Q ss_pred --eecccCCCCCccCCccc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCC
Q psy7769 230 --VYSTCSLSPIQNDGVVH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSP 284 (355)
Q Consensus 230 --lDaPCSgsG~t~~~~l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~ 284 (355)
.|+-.. ...++ |..+... ++|+++.+.|||||+|+........
T Consensus 145 ~~~D~v~~------~~vlh~~~d~~~~------~~L~~~~~~LkPGG~l~i~e~~~~~ 190 (253)
T d1tw3a2 145 RKADAIIL------SFVLLNWPDHDAV------RILTRCAEALEPGGRILIHERDDLH 190 (253)
T ss_dssp SCEEEEEE------ESCGGGSCHHHHH------HHHHHHHHTEEEEEEEEEEECCBCG
T ss_pred cchhheee------ccccccCCchhhH------HHHHHHHHhcCCCcEEEEEeccCCC
Confidence 222210 00022 4332221 7899999999999999987665443
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.46 E-value=2.3e-07 Score=77.62 Aligned_cols=90 Identities=19% Similarity=0.125 Sum_probs=64.8
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEeccee-------------
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSV------------- 229 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~------------- 229 (355)
.|.+|||+|||+|+.++.++..+. .+|+++|.++..+ +++|++ . .+. .++++++.|+..
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~--~--~~~~~~~~ii~~D~~~~l~~~~~~fDiIf 88 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNII--M--TKAENRFTLLKMEAERAIDCLTGRFDLVF 88 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHH--T--TTCGGGEEEECSCHHHHHHHBCSCEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhh--h--cccccchhhhcccccccccccccccceeE
Confidence 588999999999999998877653 5999999999999 899998 3 344 458888777632
Q ss_pred eecccCCCCCccCCccccchHHHHhhhhHHHHHHH--HHhhccCCcEEEEEe
Q psy7769 230 VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKH--ALKLVKVGGSVVYST 279 (355)
Q Consensus 230 lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~--A~~~LkpGG~lVYsT 279 (355)
+|||-. ... .+..|.. ..++|+|||.++..+
T Consensus 89 ~DPPy~-------------~~~------~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 89 LDPPYA-------------KET------IVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp ECCSSH-------------HHH------HHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred echhhc-------------cch------HHHHHHHHHHCCCcCCCeEEEEEe
Confidence 888741 111 1122332 246899999888754
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.45 E-value=2.6e-07 Score=80.40 Aligned_cols=141 Identities=11% Similarity=-0.070 Sum_probs=88.5
Q ss_pred cHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh-HHhhccccccccCc--ceEEEEEecceee
Q psy7769 155 SLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV-LALNIRPYDTVLDI--HALKLVKVGGSVV 230 (355)
Q Consensus 155 S~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl-l~~~l~r~~~~~g~--~~v~~~~~Da~~l 230 (355)
+.+.+.++.+++|++|||.|||+|+....+..... ...++++|+++..+ +.....- . .+. ........|...-
T Consensus 8 ~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~~~~-~--~~~~~~~~~~~~fd~ii~ 84 (223)
T d2ih2a1 8 VDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEG-I--LADFLLWEPGEAFDLILG 84 (223)
T ss_dssp HHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEE-E--ESCGGGCCCSSCEEEEEE
T ss_pred HHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhccccee-e--eeehhccccccccceecc
Confidence 44566777889999999999999999888876654 36799999999877 3221110 0 000 0000112344447
Q ss_pred ecccCCCCCccCCc--cccc-hHH-------HHhhhhHH-HHHHHHHhhccCCcEEEEEe-CCCCCCCCHHHHHHHHHhh
Q psy7769 231 YSTCSLSPIQNDGV--VHMS-LKR-------IWEETGCE-IEIKHALKLVKVGGSVVYST-CSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 231 DaPCSgsG~t~~~~--l~~~-~~~-------l~~l~~lQ-~lL~~A~~~LkpGG~lVYsT-CSl~~~ENE~vV~~~L~~~ 298 (355)
++|........... .... ... ......++ ..+.+++++|++||++++.+ +|+...++...++++|.+.
T Consensus 85 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~~~~lR~~l~~~ 164 (223)
T d2ih2a1 85 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREFLARE 164 (223)
T ss_dssp CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHHHHHH
T ss_pred cCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcchHHHHHHHHhc
Confidence 78874433111111 1100 111 11123355 77899999999999998886 7787788888888888764
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.45 E-value=6.1e-08 Score=83.04 Aligned_cols=44 Identities=23% Similarity=0.062 Sum_probs=39.0
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
...|.+|||+|||+|+.++.++..+ ++|+++|.++.++ +++|++
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~g--a~vv~vD~~~~a~~~~~~N~~ 84 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKENVR 84 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHHH
T ss_pred ccCCCeEEEeccccchhhhhhhhcc--chhhhcccCHHHHhhhhHHHH
Confidence 4678899999999999998877764 6899999999999 899988
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=98.42 E-value=1.4e-07 Score=83.36 Aligned_cols=93 Identities=9% Similarity=-0.024 Sum_probs=65.3
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee------eecccC
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------VYSTCS 235 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------lDaPCS 235 (355)
-..+.+|||+|||+|..+..+++.+ .+|+|+|+|+.++ ++++.. .++.++.+|... .|+-.+
T Consensus 18 ~~~~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~--------~~~~~~~~~~~~~~~~~~fD~I~~ 87 (225)
T d2p7ia1 18 FFRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLK--------DGITYIHSRFEDAQLPRRYDNIVL 87 (225)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSC--------SCEEEEESCGGGCCCSSCEEEEEE
T ss_pred hCCCCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhcccc--------cccccccccccccccccccccccc
Confidence 3457799999999999999888765 5799999999999 665544 246777777643 333321
Q ss_pred CCCCccCCccccchHHHHhhhhHHHHHHHHH-hhccCCcEEEEEe
Q psy7769 236 LSPIQNDGVVHMSLKRIWEETGCEIEIKHAL-KLVKVGGSVVYST 279 (355)
Q Consensus 236 gsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~-~~LkpGG~lVYsT 279 (355)
. .-+..+.+...+|.++. ++|||||.++.++
T Consensus 88 ~-------------~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~ 119 (225)
T d2p7ia1 88 T-------------HVLEHIDDPVALLKRINDDWLAEGGRLFLVC 119 (225)
T ss_dssp E-------------SCGGGCSSHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred c-------------ceeEecCCHHHHHHHHHHHhcCCCceEEEEe
Confidence 1 11222223336688887 7899999999876
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.40 E-value=4.2e-07 Score=78.55 Aligned_cols=116 Identities=16% Similarity=0.102 Sum_probs=67.3
Q ss_pred CCCCCeEeeecccCcchHHHHHHhc-CCCcEEEEcCCchhhHHhhccccccccCcceEEEEEeccee-------------
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTL-YPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKVGGSV------------- 229 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~-~~g~V~AvD~s~~Rll~~~l~r~~~~~g~~~v~~~~~Da~~------------- 229 (355)
.++|..|||+||||||++..+++.. ..+.|+++|..+-.- +.++.++++|...
T Consensus 20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~-------------i~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (180)
T d1ej0a_ 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP-------------IVGVDFLQGDFRDELVMKALLERVGD 86 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC-------------CTTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccccc-------------cCCceEeecccccchhhhhhhhhccC
Confidence 4789999999999999999888765 448999999876221 1223333333211
Q ss_pred --eecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 230 --VYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 230 --lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
+|..-|-.+.-..++ +..+ -.....|- ..|.-|.+.|++||.+|.=.-. .+....+.+.|+.+
T Consensus 87 ~~~DlVlSD~ap~~sg~--~~~d-~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~---g~~~~~l~~~l~~~ 152 (180)
T d1ej0a_ 87 SKVQVVMSDMAPNMSGT--PAVD-IPRAMYLVELALEMCRDVLAPGGSFVVKVFQ---GEGFDEYLREIRSL 152 (180)
T ss_dssp CCEEEEEECCCCCCCSC--HHHH-HHHHHHHHHHHHHHHHHHEEEEEEEEEEEES---STTHHHHHHHHHHH
T ss_pred cceeEEEecccchhccc--chhH-HHHHHHHHHHHHHhhhhccCCCCcEEEEEec---CccHHHHHHHHHhh
Confidence 222211111000000 1111 11122222 7889999999999999976533 24444555666654
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.35 E-value=9.8e-08 Score=85.37 Aligned_cols=101 Identities=16% Similarity=0.113 Sum_probs=69.9
Q ss_pred HHhh--CCCCCCeEeeecccCcchHHHHHHhcC------CCcEEEEcCCchhh--HHhhcccccc-ccCcceEEEEEecc
Q psy7769 159 VLAL--NIRPYDTVLDMCAAPGGKTLVALQTLY------PDYYCMDGASLLPV--LALNIRPYDT-VLDIHALKLVKVGG 227 (355)
Q Consensus 159 ~~~L--~~~pG~~VLD~CAgPGgKT~~la~~~~------~g~V~AvD~s~~Rl--l~~~l~r~~~-~~g~~~v~~~~~Da 227 (355)
..+| +++||++|||++||+|..|+.++.+.+ .++|+++|.++..+ +++|+..... ..+..|+.+..+|+
T Consensus 71 l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~ 150 (223)
T d1r18a_ 71 LEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDG 150 (223)
T ss_dssp HHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCG
T ss_pred HHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccc
Confidence 3444 789999999999999999999998752 25899999999988 6676652100 02446899999998
Q ss_pred ee-------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEE
Q psy7769 228 SV-------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYS 278 (355)
Q Consensus 228 ~~-------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYs 278 (355)
.. .|.-..+.++ + ++-....+.|||||++|.-
T Consensus 151 ~~~~~~~~~fD~Iiv~~a~-------~------------~~p~~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 151 RKGYPPNAPYNAIHVGAAA-------P------------DTPTELINQLASGGRLIVP 189 (223)
T ss_dssp GGCCGGGCSEEEEEECSCB-------S------------SCCHHHHHTEEEEEEEEEE
T ss_pred ccccccccceeeEEEEeec-------h------------hchHHHHHhcCCCcEEEEE
Confidence 64 3433322221 0 1122346789999999874
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.34 E-value=4.6e-07 Score=87.76 Aligned_cols=52 Identities=12% Similarity=-0.080 Sum_probs=44.4
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
+...++++||++|||+|||.|..+.++|...+.++|+++|+++.++ ++++.+
T Consensus 208 Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~ 261 (406)
T d1u2za_ 208 VYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYE 261 (406)
T ss_dssp HHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHH
Confidence 3456789999999999999999999999887667899999999999 555544
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=98.29 E-value=5.6e-07 Score=77.69 Aligned_cols=96 Identities=11% Similarity=0.017 Sum_probs=62.3
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecccCCCCCcc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQN 241 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~ 241 (355)
..|+++|||+|||+|..+..+ .+++|+|+|+.++ ++++ ++.++++|+..+..+- + +
T Consensus 34 ~~~~~~vLDiGcG~G~~~~~~------~~~~giD~s~~~~~~a~~~-----------~~~~~~~d~~~l~~~~---~-~- 91 (208)
T d1vlma_ 34 LLPEGRGVEIGVGTGRFAVPL------KIKIGVEPSERMAEIARKR-----------GVFVLKGTAENLPLKD---E-S- 91 (208)
T ss_dssp HCCSSCEEEETCTTSTTHHHH------TCCEEEESCHHHHHHHHHT-----------TCEEEECBTTBCCSCT---T-C-
T ss_pred hCCCCeEEEECCCCccccccc------ceEEEEeCChhhccccccc-----------cccccccccccccccc---c-c-
Confidence 356779999999999877665 3578999999998 3321 2467777765432211 0 0
Q ss_pred CCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 242 DGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 242 ~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
-++.+...-+..+...+.+|.++.++|+|||.++.++...
T Consensus 92 -fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~ 131 (208)
T d1vlma_ 92 -FDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDR 131 (208)
T ss_dssp -EEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred -ccccccccccccccccccchhhhhhcCCCCceEEEEecCC
Confidence 0111111123333344578999999999999999988644
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.28 E-value=4.4e-07 Score=78.27 Aligned_cols=64 Identities=19% Similarity=0.085 Sum_probs=52.3
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecce-------------ee
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGS-------------VV 230 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~-------------~l 230 (355)
.|.+|||+|||+|..++.++..+. .+|+++|.++..+ +++|++ . .+..++.+++.|+. .+
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa-~~v~~VE~~~~a~~~~k~N~~--~--~~~~~~~ii~~d~~~~l~~~~~~fDlIf~ 117 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLA--T--LKAGNARVVNSNAMSFLAQKGTPHNIVFV 117 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHH--H--TTCCSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred chhhhhhhhccccceeeeEEecCc-ceeEEEEEeechhhHHHHHHh--h--ccccceeeeeecccccccccccccCEEEE
Confidence 578999999999999999887753 5899999999999 999998 3 35566777776653 38
Q ss_pred eccc
Q psy7769 231 YSTC 234 (355)
Q Consensus 231 DaPC 234 (355)
|||.
T Consensus 118 DPPY 121 (183)
T d2fpoa1 118 DPPF 121 (183)
T ss_dssp CCSS
T ss_pred cCcc
Confidence 9996
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.27 E-value=4.8e-07 Score=78.13 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=47.3
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecc
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGG 227 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da 227 (355)
-.|.+|||+|||+|+.++.++..+. ..|+++|.++..+ +++|++.+ +. .++.+.+.|+
T Consensus 40 ~~~~~vLDlfaGsG~~g~ea~srGa-~~v~~ve~~~~a~~~~~~N~~~~----~~~~~~~i~~~D~ 100 (182)
T d2fhpa1 40 FDGGMALDLYSGSGGLAIEAVSRGM-DKSICIEKNFAALKVIKENIAIT----KEPEKFEVRKMDA 100 (182)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHH----TCGGGEEEEESCH
T ss_pred cCCCEEEEcccccccccceeeecch-hHHHHHHHHHHHHHHHHHHhhhh----hcccccccccccc
Confidence 4799999999999999999888753 5799999999999 88998832 33 4677777665
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=5.4e-07 Score=83.46 Aligned_cols=107 Identities=19% Similarity=0.000 Sum_probs=69.5
Q ss_pred hhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh-HHhhccccccccCcceEEEEEeccee-------eec
Q psy7769 161 ALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV-LALNIRPYDTVLDIHALKLVKVGGSV-------VYS 232 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl-l~~~l~r~~~~~g~~~v~~~~~Da~~-------lDa 232 (355)
.....+|.+|||++||+|..+..+|+.+. .+|+|+|.++... ++++... . ....++.++++|... +|.
T Consensus 30 ~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~-~--~~~~~i~~~~~~~~~l~~~~~~~D~ 105 (311)
T d2fyta1 30 NPHIFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRL-N--KLEDTITLIKGKIEEVHLPVEKVDV 105 (311)
T ss_dssp CGGGTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHH-T--TCTTTEEEEESCTTTSCCSCSCEEE
T ss_pred ccccCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHH-h--CCCccceEEEeeHHHhcCccccceE
Confidence 34566899999999999999998888753 5899999999877 5555441 1 123568888887754 444
Q ss_pred ccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 233 TCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 233 PCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
.+|..- ..-+..-..++.++....++|||||+++-+.++
T Consensus 106 Ivse~~----------~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~~~~ 144 (311)
T d2fyta1 106 IISEWM----------GYFLLFESMLDSVLYAKNKYLAKGGSVYPDICT 144 (311)
T ss_dssp EEECCC----------BTTBTTTCHHHHHHHHHHHHEEEEEEEESCEEE
T ss_pred EEEeee----------eeecccccccHHHHHHHHhcCCCCcEEeccccc
Confidence 432100 000000011226677778899999999854444
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.21 E-value=1.3e-06 Score=76.51 Aligned_cols=70 Identities=16% Similarity=0.014 Sum_probs=52.7
Q ss_pred HhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecc---------e
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGG---------S 228 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da---------~ 228 (355)
...+--.|.+|||+|||+|+.+..++..+ ..+|+|+|+++.++ +++|++ . .+. ++.+...|. .
T Consensus 40 ~~~~dl~g~~vLDlg~GtG~l~i~a~~~g-~~~v~~vdi~~~~~~~a~~N~~--~--~~~-~~~~~~~d~~~~~~~fD~V 113 (201)
T d1wy7a1 40 YSLGDIEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLG--E--FKG-KFKVFIGDVSEFNSRVDIV 113 (201)
T ss_dssp HHTTSSTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTG--G--GTT-SEEEEESCGGGCCCCCSEE
T ss_pred HhcCCCCCCEEEECcCcchHHHHHHHHcC-CCEEEEEcCcHHHHHHHHHHHH--H--cCC-CceEEECchhhhCCcCcEE
Confidence 44444578999999999999998877653 35899999999999 888988 3 233 356666554 3
Q ss_pred eeecccC
Q psy7769 229 VVYSTCS 235 (355)
Q Consensus 229 ~lDaPCS 235 (355)
..|||+.
T Consensus 114 i~nPP~~ 120 (201)
T d1wy7a1 114 IMNPPFG 120 (201)
T ss_dssp EECCCCS
T ss_pred EEcCccc
Confidence 4899983
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.21 E-value=5.2e-07 Score=84.01 Aligned_cols=107 Identities=11% Similarity=0.002 Sum_probs=68.7
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh-HHhhccccccccCc-ceEEEEEecceeeecccCCCCCcc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV-LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLSPIQN 241 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl-l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG~t~ 241 (355)
..+|.+|||+|||+|..+..+|+.+ ..+|+|+|.++... ++++++ . .+. .++.++++|...++.|-.
T Consensus 31 ~~~~~~VLDiGcG~G~ls~~aa~~G-a~~V~avd~s~~~~~a~~~~~--~--n~~~~~v~~~~~~~~~~~~~~~------ 99 (316)
T d1oria_ 31 LFKDKVVLDVGSGTGILCMFAAKAG-ARKVIGIECSSISDYAVKIVK--A--NKLDHVVTIIKGKVEEVELPVE------ 99 (316)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHHHHHHHHH--H--TTCTTTEEEEESCTTTCCCSSS------
T ss_pred cCCcCEEEEEecCCcHHHHHHHHhC-CCEEEEEcCcHHHhhhhhHHH--H--hCCccccceEeccHHHcccccc------
Confidence 4589999999999999988888864 35799999998766 666665 2 233 468888888765333310
Q ss_pred CCccc---cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 242 DGVVH---MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 242 ~~~l~---~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
..++. |-..-+..-..++.++....++|||||.++=+.++
T Consensus 100 ~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP~~~~ 142 (316)
T d1oria_ 100 KVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRAT 142 (316)
T ss_dssp CEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEEE
T ss_pred eeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEeeeEE
Confidence 00000 10000111112337888899999999999844333
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.19 E-value=2.4e-06 Score=77.14 Aligned_cols=110 Identities=10% Similarity=-0.014 Sum_probs=74.7
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeecccC
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCS 235 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCS 235 (355)
+..++.....+|||++||+|..+..+++..+..+++++|+ +..+ +++++. . .+. .++.+..+|... +.|.+
T Consensus 74 ~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~--~--~~~~~ri~~~~~d~~~-~~p~~ 147 (256)
T d1qzza2 74 ADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFA--D--AGLADRVTVAEGDFFK-PLPVT 147 (256)
T ss_dssp HHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHH--H--TTCTTTEEEEECCTTS-CCSCC
T ss_pred HhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHh--h--cCCcceeeeeeeeccc-ccccc
Confidence 3445566778999999999999999999887789999998 5555 667776 2 233 568888888643 33331
Q ss_pred CCCCccCCc-cc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 236 LSPIQNDGV-VH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 236 gsG~t~~~~-l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
..- ..-.+ ++ |..+... ++|+++.+.|||||+|+...-.
T Consensus 148 ~D~-v~~~~vLh~~~d~~~~------~lL~~i~~~LkpgG~llI~d~~ 188 (256)
T d1qzza2 148 ADV-VLLSFVLLNWSDEDAL------TILRGCVRALEPGGRLLVLDRA 188 (256)
T ss_dssp EEE-EEEESCGGGSCHHHHH------HHHHHHHHHEEEEEEEEEEECC
T ss_pred chh-hhccccccccCcHHHH------HHHHHHHhhcCCcceeEEEEec
Confidence 111 11111 22 5433222 7899999999999999977643
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.18 E-value=5.7e-07 Score=83.75 Aligned_cols=136 Identities=12% Similarity=0.061 Sum_probs=86.4
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-----CCcEEEEcCCchhh--HHhhccccccccCcceEEEEE-----
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-----PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVK----- 224 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-----~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~----- 224 (355)
++..+++++++.+|||.|||+|+....++..+. ...++|+|+++..+ ++.++. . .+. +..+..
T Consensus 108 l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~--~--~~~-~~~~~~~d~~~ 182 (328)
T d2f8la1 108 LLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGAD--L--QRQ-KMTLLHQDGLA 182 (328)
T ss_dssp HHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHH--H--HTC-CCEEEESCTTS
T ss_pred HHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHH--H--hhh-hhhhhcccccc
Confidence 344556788999999999999999988876431 24799999999888 444443 1 121 122333
Q ss_pred ------ecceeeecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEE-EeCCCCCCCCHHHHHHHHH
Q psy7769 225 ------VGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVY-STCSLSPIQNDGVVHMSLK 296 (355)
Q Consensus 225 ------~Da~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVY-sTCSl~~~ENE~vV~~~L~ 296 (355)
.|....+||.+..... .+.-.+...........+ -.+.+++++|+|||++++ ..+|+....++..++.+|.
T Consensus 183 ~~~~~~fD~vi~NPPy~~~~~~-~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~ 261 (328)
T d2f8la1 183 NLLVDPVDVVISDLPVGYYPDD-ENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIK 261 (328)
T ss_dssp CCCCCCEEEEEEECCCSEESCH-HHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHH
T ss_pred ccccccccccccCCCCCCCccc-hhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHH
Confidence 3444478998332210 000001000011112344 679999999999999876 4788888888888888887
Q ss_pred hh
Q psy7769 297 RI 298 (355)
Q Consensus 297 ~~ 298 (355)
++
T Consensus 262 ~~ 263 (328)
T d2f8la1 262 KN 263 (328)
T ss_dssp HH
T ss_pred hC
Confidence 64
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=5.6e-07 Score=81.55 Aligned_cols=113 Identities=10% Similarity=-0.001 Sum_probs=64.9
Q ss_pred CCCCCeEeeecccCcchHHHHHHhc----CC--CcEEEEcCCchhh--HHhhccccccccCcceEEEE--Eecceee--e
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTL----YP--DYYCMDGASLLPV--LALNIRPYDTVLDIHALKLV--KVGGSVV--Y 231 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~----~~--g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~--~~Da~~l--D 231 (355)
.+++.+|||+|||+|..+..++..+ .. ..++++|+|+.++ +++++.+. ....++.+. ..++... +
T Consensus 38 ~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 114 (280)
T d1jqea_ 38 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKI---SNLENVKFAWHKETSSEYQSR 114 (280)
T ss_dssp TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTC---CSCTTEEEEEECSCHHHHHHH
T ss_pred CCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhc---cccccccccchhhhhhhhcch
Confidence 4455689999999999998887642 11 4689999999999 77776621 233444432 2222110 1
Q ss_pred cccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 232 STCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 232 aPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
...... ...-++.+...-+.........|+++.++|+|||.|+..+.+
T Consensus 115 ~~~~~~--~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~ 162 (280)
T d1jqea_ 115 MLEKKE--LQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVS 162 (280)
T ss_dssp HTTSSS--CCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred hcccCC--CCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEec
Confidence 011000 000001111111222223337899999999999999887654
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=3e-06 Score=75.00 Aligned_cols=45 Identities=13% Similarity=-0.010 Sum_probs=36.5
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
..+|.+|||+|||+|..+..++... ...|+|+|+|+.++ ++++++
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~ 95 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLK 95 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHh
Confidence 4678899999999999887666543 24799999999999 777765
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.10 E-value=7e-07 Score=83.44 Aligned_cols=122 Identities=12% Similarity=0.003 Sum_probs=72.2
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh-HHhhccccccccCc-ceEEEEEecceeeecccCCCCCc
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV-LALNIRPYDTVLDI-HALKLVKVGGSVVYSTCSLSPIQ 240 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl-l~~~l~r~~~~~g~-~~v~~~~~Da~~lDaPCSgsG~t 240 (355)
...+|.+|||+|||+|..+..+|+.+ ..+|+|+|.++... ++++.+ . .+. .++.++.+|...++.|....-+.
T Consensus 35 ~~~~~~~VLDlGcGtG~ls~~aa~~G-a~~V~avd~s~~~~~a~~~~~--~--~~~~~~i~~i~~~~~~l~~~~~~~D~i 109 (328)
T d1g6q1_ 35 DLFKDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSSIIEMAKELVE--L--NGFSDKITLLRGKLEDVHLPFPKVDII 109 (328)
T ss_dssp HHHTTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESSTHHHHHHHHHH--H--TTCTTTEEEEESCTTTSCCSSSCEEEE
T ss_pred ccCCcCEEEEeCCCCCHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHH--H--hCccccceEEEeehhhccCcccceeEE
Confidence 44589999999999999998888764 35899999997443 666555 2 222 56888888876544332000000
Q ss_pred cCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC--CCCCCCHHHHH
Q psy7769 241 NDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS--LSPIQNDGVVH 292 (355)
Q Consensus 241 ~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS--l~~~ENE~vV~ 292 (355)
. ..|...-+.....+..++....++|||||+++=+.++ +.+.|....-+
T Consensus 110 ~---se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP~~~~~~~~~v~~~~l~~ 160 (328)
T d1g6q1_ 110 I---SEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKD 160 (328)
T ss_dssp E---ECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHHHH
T ss_pred E---EEecceeeccchhHHHHHHHHHhccCCCeEEEeeecceeeecccCHHHHH
Confidence 0 0010000111111226677778999999999744433 34455554433
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.00 E-value=3.6e-06 Score=72.33 Aligned_cols=44 Identities=18% Similarity=0.073 Sum_probs=39.5
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccc
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRP 210 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r 210 (355)
.|.+|||+|||+|..++.++..+. ..|+.+|.+...+ +++|+++
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA-~~v~fVE~~~~a~~~ik~Ni~~ 88 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQT 88 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHH
T ss_pred ccceEeecccCccceeeeeeeecc-eeeEEeecccchhhhHhhHHhh
Confidence 678999999999999999988763 5899999999999 9999984
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=4.3e-06 Score=75.53 Aligned_cols=46 Identities=13% Similarity=0.094 Sum_probs=35.7
Q ss_pred CCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 163 NIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
+...|.+|||++||||..++..+.... .+|+|+|.|+.++ ++++++
T Consensus 51 g~~~g~~vLDiGcG~g~~~~~~~~~~~-~~v~~~D~S~~~i~~~~~~~~ 98 (263)
T d2g72a1 51 GEVSGRTLIDIGSGPTVYQLLSACSHF-EDITMTDFLEVNRQELGRWLQ 98 (263)
T ss_dssp SCSCCSEEEEETCTTCCGGGTTGGGGC-SEEEEECSCHHHHHHHHHHHT
T ss_pred CCCCCcEEEEeccCCCHHHHHHhcccC-CeEEEEeCCHHHHHHHHHHHh
Confidence 445789999999999987765443332 4799999999999 776665
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.94 E-value=1.7e-05 Score=70.17 Aligned_cols=118 Identities=14% Similarity=0.057 Sum_probs=74.6
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceeeec
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVVYS 232 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~lDa 232 (355)
+...+.....-.+||++|++.|.-|+.+|..++ +|+|+++|.++... +++++++ .|. ..+++..+|+...-.
T Consensus 50 lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~----ag~~~~i~~~~Gda~e~l~ 125 (219)
T d2avda1 50 LLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQ----AEAEHKIDLRLKPALETLD 125 (219)
T ss_dssp HHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHH----TTCTTTEEEEESCHHHHHH
T ss_pred HHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHh----cCccceEEEEEeehhhcch
Confidence 333333334445999999999999999998775 59999999999999 8888883 344 458888888754111
Q ss_pred ccCCCCCccCCcccc-chHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCC
Q psy7769 233 TCSLSPIQNDGVVHM-SLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSL 282 (355)
Q Consensus 233 PCSgsG~t~~~~l~~-~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl 282 (355)
.--..+....-++.| +.++ ......++.++++|+|||.||+-.--+
T Consensus 126 ~~~~~~~~~~fD~ifiD~dk----~~y~~~~~~~~~lL~~GGvii~Dn~l~ 172 (219)
T d2avda1 126 ELLAAGEAGTFDVAVVDADK----ENCSAYYERCLQLLRPGGILAVLRVLW 172 (219)
T ss_dssp HHHHTTCTTCEEEEEECSCS----TTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred hhhhhcccCCccEEEEeCCH----HHHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 000000000011111 0000 011156788899999999999865544
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.79 E-value=1.3e-05 Score=71.67 Aligned_cols=69 Identities=9% Similarity=0.044 Sum_probs=58.3
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecc
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYST 233 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaP 233 (355)
-.+..+++++|++||++|+|+|..|..|+... .+|+|+|+++..+ ++++.. +.+|+.++++|+..+|.|
T Consensus 12 ~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~--~~v~avE~D~~l~~~l~~~~~------~~~n~~i~~~D~l~~~~~ 82 (235)
T d1qama_ 12 KIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLV------DHDNFQVLNKDILQFKFP 82 (235)
T ss_dssp HHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTT------TCCSEEEECCCGGGCCCC
T ss_pred HHHHhcCCCCCCeEEEECCCchHHHHHHHhCc--CceEEEeeccchHHHHHHHhh------cccchhhhhhhhhhcccc
Confidence 45667788999999999999999999999875 6899999999888 666654 346899999999887765
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.75 E-value=1.6e-05 Score=69.36 Aligned_cols=107 Identities=8% Similarity=-0.058 Sum_probs=66.8
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee------
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------ 229 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------ 229 (355)
.+..++--.|.+|||+|||+|..++.++... ..+|+++|+++..+ +++|+.+ +.+++.|...
T Consensus 40 ~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~g-a~~V~~vDid~~a~~~ar~N~~~---------~~~~~~D~~~l~~~fD 109 (197)
T d1ne2a_ 40 EIYNDGNIGGRSVIDAGTGNGILACGSYLLG-AESVTAFDIDPDAIETAKRNCGG---------VNFMVADVSEISGKYD 109 (197)
T ss_dssp HHHHHTSSBTSEEEEETCTTCHHHHHHHHTT-BSEEEEEESCHHHHHHHHHHCTT---------SEEEECCGGGCCCCEE
T ss_pred HHHHcCCCCCCEEEEeCCCCcHHHHHHHHcC-CCcccccccCHHHHHHHHHcccc---------ccEEEEehhhcCCcce
Confidence 3455554579999999999999887666653 36899999999999 7888762 2455555432
Q ss_pred ---eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHh
Q psy7769 230 ---VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 230 ---lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~ 297 (355)
.|||. | +...+ .+ ...|+.++.. +.+||+-+. ......+......
T Consensus 110 ~Vi~NPPf---g-~~~~~----~D--------~~fl~~a~~~----~~~iy~ih~---~~~~~~i~~~~~~ 157 (197)
T d1ne2a_ 110 TWIMNPPF---G-SVVKH----SD--------RAFIDKAFET----SMWIYSIGN---AKARDFLRREFSA 157 (197)
T ss_dssp EEEECCCC---------------C--------HHHHHHHHHH----EEEEEEEEE---GGGHHHHHHHHHH
T ss_pred EEEeCccc---c-hhhhh----ch--------HHHHHHHHhc----CCeEEEehh---hhHHHHHHHHhhc
Confidence 55553 2 11110 00 0345555543 578997654 3566666666554
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.68 E-value=2.2e-05 Score=69.08 Aligned_cols=100 Identities=9% Similarity=-0.018 Sum_probs=66.4
Q ss_pred CeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceee----ecccCCCCC
Q psy7769 168 DTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVV----YSTCSLSPI 239 (355)
Q Consensus 168 ~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~l----DaPCSgsG~ 239 (355)
.+||++|+|.|.-|+.+|..+. .|+|+++|.++.++ ++++++ . .|. .+|+++.+|+..+ +.... .+
T Consensus 58 k~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~--~--~gl~~~i~l~~Gd~~e~l~~l~~~~~-~~- 131 (214)
T d2cl5a1 58 SLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLN--F--AGLQDKVTILNGASQDLIPQLKKKYD-VD- 131 (214)
T ss_dssp SEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHH--H--HTCGGGEEEEESCHHHHGGGHHHHSC-CC-
T ss_pred CEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHH--H--cCCCccceeeeccccccccchhhccc-cc-
Confidence 4999999999999999998764 48999999999999 888887 3 354 5689998887541 11110 00
Q ss_pred ccCCc-cc-cchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEe
Q psy7769 240 QNDGV-VH-MSLKRIWEETGCE-IEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 240 t~~~~-l~-~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsT 279 (355)
..+-- +. +.... .. ..+..++++|||||.||+=.
T Consensus 132 ~~D~ifiD~~~~~~------~~~~~l~~~~~lLkpGGvIv~Dd 168 (214)
T d2cl5a1 132 TLDMVFLDHWKDRY------LPDTLLLEKCGLLRKGTVLLADN 168 (214)
T ss_dssp CEEEEEECSCGGGH------HHHHHHHHHTTCEEEEEEEEESC
T ss_pred ccceeeeccccccc------ccHHHHHHHhCccCCCcEEEEeC
Confidence 00000 00 11110 11 34778889999999887643
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.60 E-value=0.00014 Score=64.45 Aligned_cols=110 Identities=15% Similarity=0.068 Sum_probs=73.0
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-CCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEecceee--
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-PDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVGGSVV-- 230 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~Da~~l-- 230 (355)
+...++....-.+||++|++.|.-|+.+|..++ .|+|+++|.++... ++++++ + .|. +.++++.+|+..+
T Consensus 50 ~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~--~--~g~~~~i~~~~g~a~~~L~ 125 (227)
T d1susa1 50 FLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIK--K--AGVDHKIDFREGPALPVLD 125 (227)
T ss_dssp HHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHH--H--TTCGGGEEEEESCHHHHHH
T ss_pred HHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHH--H--hccccceeeeehHHHHHHH
Confidence 333333333445999999999999999998775 59999999999999 888888 3 344 4688888887431
Q ss_pred ----ecccCCCCCccCCc-cc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 231 ----YSTCSLSPIQNDGV-VH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 231 ----DaPCSgsG~t~~~~-l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
+.... | ..+-- +. |+. ....-++.+.++|+|||.||+=..
T Consensus 126 ~l~~~~~~~--~-~fD~iFiDa~k~-------~y~~~~e~~~~ll~~gGiii~DNv 171 (227)
T d1susa1 126 EMIKDEKNH--G-SYDFIFVDADKD-------NYLNYHKRLIDLVKVGGVIGYDNT 171 (227)
T ss_dssp HHHHCGGGT--T-CBSEEEECSCST-------THHHHHHHHHHHBCTTCCEEEETT
T ss_pred HHHhccccC--C-ceeEEEeccchh-------hhHHHHHHHHhhcCCCcEEEEccC
Confidence 11110 0 00100 10 111 111567888999999999998655
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.59 E-value=1e-05 Score=72.97 Aligned_cols=78 Identities=10% Similarity=-0.029 Sum_probs=62.5
Q ss_pred EEEechhc-HHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEE
Q psy7769 148 YYCMDGAS-LLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVK 224 (355)
Q Consensus 148 ~~~QD~aS-~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~ 224 (355)
-++.|..- --.+..+++.+++.||++|+|+|..|..|++.. .+|+|+|+++..+ +++++. +..|+.+++
T Consensus 10 nFL~d~~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~--~~v~aIE~D~~l~~~l~~~~~------~~~n~~ii~ 81 (245)
T d1yuba_ 10 NFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLK------LNTRVTLIH 81 (245)
T ss_dssp CBCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTT------TCSEEEECC
T ss_pred cccCCHHHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhc--CceeEeeecccchhhhhhhhh------hccchhhhh
Confidence 45566553 456778889999999999999999999999875 6899999999887 554443 346899999
Q ss_pred ecceeeecc
Q psy7769 225 VGGSVVYST 233 (355)
Q Consensus 225 ~Da~~lDaP 233 (355)
+|+..+|.+
T Consensus 82 ~D~l~~~~~ 90 (245)
T d1yuba_ 82 QDILQFQFP 90 (245)
T ss_dssp SCCTTTTCC
T ss_pred hhhhccccc
Confidence 999776655
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.53 E-value=4.5e-05 Score=72.71 Aligned_cols=59 Identities=20% Similarity=0.095 Sum_probs=45.5
Q ss_pred echhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 151 MDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 151 QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
|-...-+.+.++..-.+.+|||+.||+|..++..|.-.+...|++||+|+..+ +++|++
T Consensus 30 q~~NRDlsvl~~~~~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~ 90 (375)
T d2dula1 30 MALNRDIVVVLLNILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVM 90 (375)
T ss_dssp GHHHHHHHHHHHHHHCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHhCCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHH
Confidence 54444444444444457799999999999999887655556899999999999 888886
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.52 E-value=7.3e-05 Score=65.54 Aligned_cols=94 Identities=11% Similarity=-0.013 Sum_probs=72.3
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee------eecccCCC
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------VYSTCSLS 237 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------lDaPCSgs 237 (355)
++.+|+|+|+|.|--++.+|-..+..+++.+|.+..++ +++... . ++..|+++.+..+.. .|.-+|
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~--~--L~L~nv~v~~~R~E~~~~~~~fD~V~s-- 138 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQH--E--LKLENIEPVQSRVEEFPSEPPFDGVIS-- 138 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHH--H--TTCSSEEEEECCTTTSCCCSCEEEEEC--
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHH--H--cCCcceeeeccchhhhccccccceehh--
Confidence 46799999999999999999877778999999999999 666666 3 567788888776644 343321
Q ss_pred CCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeC
Q psy7769 238 PIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 238 G~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTC 280 (355)
+.++.+..++.-+..++++||+++.-.-
T Consensus 139 ---------------RA~~~~~~ll~~~~~~l~~~g~~~~~KG 166 (207)
T d1jsxa_ 139 ---------------RAFASLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp ---------------SCSSSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred ---------------hhhcCHHHHHHHHHHhcCCCcEEEEECC
Confidence 1223344789999999999999988764
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=97.47 E-value=0.00013 Score=66.52 Aligned_cols=56 Identities=14% Similarity=0.035 Sum_probs=43.3
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEEec
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVKVG 226 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~~D 226 (355)
+..+|+|+|+|+|..++.++.. ...+|+|+|+|+..+ +++|+++ .+. .++.+...|
T Consensus 110 ~~~~vld~g~GsG~i~~~la~~-~~~~v~a~Dis~~Al~~A~~Na~~----~~~~~~~~i~~~~ 168 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAER----HGVSDRFFVRKGE 168 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHH----TTCTTSEEEEESS
T ss_pred cccEEEEeeeeeehhhhhhhhc-ccceeeechhhhhHHHHHHHHHHH----cCCCceeEEeecc
Confidence 3458999999999999888754 568999999999999 8999983 233 235555544
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.36 E-value=6.4e-05 Score=67.37 Aligned_cols=103 Identities=13% Similarity=0.036 Sum_probs=76.0
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee------
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------ 229 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------ 229 (355)
+...+....+.+|+|+|+|.|-=++.+|-..+..+|+.+|.+..++ ++.... . ++..|+.+++..+..
T Consensus 62 ~~~~~~~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~--~--L~L~n~~i~~~R~E~~~~~~~ 137 (239)
T d1xdza_ 62 AAFYVDFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSE--A--LQLENTTFCHDRAETFGQRKD 137 (239)
T ss_dssp GGGTSCGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHH--H--HTCSSEEEEESCHHHHTTCTT
T ss_pred hhhhhcccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHH--H--hCCCCcEEEeehhhhcccccc
Confidence 3344444467799999999999999999877778999999999999 666666 3 567788887765432
Q ss_pred ----eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCC
Q psy7769 230 ----VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCS 281 (355)
Q Consensus 230 ----lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCS 281 (355)
.|.-+ .+.++.+..++.-+..++++||++++---.
T Consensus 138 ~~~~~D~v~-----------------sRAva~l~~ll~~~~~~l~~~g~~i~~KG~ 176 (239)
T d1xdza_ 138 VRESYDIVT-----------------ARAVARLSVLSELCLPLVKKNGLFVALKAA 176 (239)
T ss_dssp TTTCEEEEE-----------------EECCSCHHHHHHHHGGGEEEEEEEEEEECC
T ss_pred ccccceEEE-----------------EhhhhCHHHHHHHHhhhcccCCEEEEECCC
Confidence 33332 123344557899999999999998876543
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.32 E-value=0.00035 Score=60.08 Aligned_cols=50 Identities=16% Similarity=0.091 Sum_probs=39.5
Q ss_pred HHHhhCCCCCCeEeeecccCcc-hHHHHHHhcCCCcEEEEcCCchhh-HHhh
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGG-KTLVALQTLYPDYYCMDGASLLPV-LALN 207 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGg-KT~~la~~~~~g~V~AvD~s~~Rl-l~~~ 207 (355)
++...++++|++||.++|||.| .++++|...+..+|+++|.++.|+ +.+.
T Consensus 17 a~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~ 68 (195)
T d1kola2 17 GAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA 68 (195)
T ss_dssp HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred HHHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhh
Confidence 4566789999999999999955 556667666667999999999999 4443
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.29 E-value=0.00011 Score=66.20 Aligned_cols=69 Identities=12% Similarity=-0.081 Sum_probs=56.1
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecc
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYST 233 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaP 233 (355)
-.+..+++.+|+.||++|+|+|..|..|++.. .+|+|+|+++..+ +++... ..+++.++++|+..+|.+
T Consensus 12 ~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~~------~~~~~~ii~~D~l~~~~~ 82 (252)
T d1qyra_ 12 SIVSAINPQKGQAMVEIGPGLAALTEPVGERL--DQLTVIELDRDLAARLQTHPF------LGPKLTIYQQDAMTFNFG 82 (252)
T ss_dssp HHHHHHCCCTTCCEEEECCTTTTTHHHHHTTC--SCEEEECCCHHHHHHHHTCTT------TGGGEEEECSCGGGCCHH
T ss_pred HHHHhcCCCCCCEEEEECCCchHHHHHHHccC--CceEEEEeccchhHHHHHHhh------hccchhHHhhhhhhhccc
Confidence 34677789999999999999999999999865 6899999998877 655433 336899999999776554
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=0.00021 Score=65.33 Aligned_cols=72 Identities=17% Similarity=0.074 Sum_probs=59.7
Q ss_pred HHHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEecceeeecc
Q psy7769 157 LPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSVVYST 233 (355)
Q Consensus 157 l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~lDaP 233 (355)
-.+..+++.+++.||++|+|+|..|..|++.. .+|+|+|+++..+ +++.+. .+ ....++.++.+|+...|.|
T Consensus 12 kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~--~~v~aiE~D~~l~~~L~~~~~--~~-~~~~~~~~i~~D~l~~~~~ 85 (278)
T d1zq9a1 12 SIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQ--GT-PVASKLQVLVGDVLKTDLP 85 (278)
T ss_dssp HHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHT--TS-TTGGGEEEEESCTTTSCCC
T ss_pred HHHHHhCCCCCCEEEEECCCchHHHHHHHhcC--CcEEEEEEccchhHHHHHHHh--hh-ccccchhhhHHHHhhhhhh
Confidence 44666789999999999999999999999875 6999999999988 887776 31 2236799999999877765
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.27 E-value=0.00057 Score=61.09 Aligned_cols=126 Identities=13% Similarity=0.052 Sum_probs=76.8
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCc-ceEEEEE------------------
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDI-HALKLVK------------------ 224 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~-~~v~~~~------------------ 224 (355)
+.-+|||+|+|+|..++.||...+..+++|+|+++..+ +++|+++ .+. .++.+..
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~----n~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQ----NNLSDLIKVVKVPQKTLLMDALKEESEII 136 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHH----TTCTTTEEEEECCTTCSSTTTSTTCCSCC
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHH----hCCCcceeeeeeccHHhhhhhhhhcccCc
Confidence 44589999999999999999887778999999999999 8889883 232 3345443
Q ss_pred ecceeeecccCCCCCc----cCCccc-cchHH---------HHhhhh---HHHHHHHHHhhccCCcEEEEEeCCCCCCCC
Q psy7769 225 VGGSVVYSTCSLSPIQ----NDGVVH-MSLKR---------IWEETG---CEIEIKHALKLVKVGGSVVYSTCSLSPIQN 287 (355)
Q Consensus 225 ~Da~~lDaPCSgsG~t----~~~~l~-~~~~~---------l~~l~~---lQ~lL~~A~~~LkpGG~lVYsTCSl~~~EN 287 (355)
+|.....||--.+.-. ..+..+ ..+.. ..+... ..+|++.+..+++..|.+ ||=+...++
T Consensus 137 fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~---t~~ig~~~~ 213 (250)
T d2h00a1 137 YDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWY---SCMLGKKCS 213 (250)
T ss_dssp BSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCE---EEEESSTTS
T ss_pred eeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEE---EEEecchhh
Confidence 2333355555221100 000000 00000 001111 228999999999988755 334556677
Q ss_pred HHHHHHHHHhh
Q psy7769 288 DGVVHMSLKRI 298 (355)
Q Consensus 288 E~vV~~~L~~~ 298 (355)
-.-|...|.+.
T Consensus 214 l~~i~~~L~~~ 224 (250)
T d2h00a1 214 LAPLKEELRIQ 224 (250)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 77777788653
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.09 E-value=0.0004 Score=66.53 Aligned_cols=146 Identities=16% Similarity=0.107 Sum_probs=86.0
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC-------------CCcEEEEcCCchhh--HHhhccccc
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY-------------PDYYCMDGASLLPV--LALNIRPYD 212 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~-------------~g~V~AvD~s~~Rl--l~~~l~r~~ 212 (355)
||--..-+.+.+.+++|.++++|+|-|||+|+..+.+++.+. ...+++.|+++... ++-|+--..
T Consensus 144 f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g 223 (425)
T d2okca1 144 YFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHG 223 (425)
T ss_dssp GCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTT
T ss_pred hccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcC
Confidence 444344455667888999999999999999999988876432 13599999999888 333332001
Q ss_pred cccCcceEEEEE-----------ecceeeecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeC
Q psy7769 213 TVLDIHALKLVK-----------VGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 213 ~~~g~~~v~~~~-----------~Da~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTC 280 (355)
.+..+..+.. +|.....||-+... ......... .........+ -.+.+++++|++||++++.+-
T Consensus 224 --~~~~~~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~-~~~~~~~~~-~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 224 --IGTDRSPIVCEDSLEKEPSTLVDVILANPPFGTRP-AGSVDINRP-DFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp --CCSSCCSEEECCTTTSCCSSCEEEEEECCCSSCCC-TTCCCCCCT-TSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --CccccceeecCchhhhhcccccceEEecCCCCCCc-cccchhhhh-hcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 1111222333 34445788874332 111111100 0000111233 578999999999999888765
Q ss_pred --CCCCCCCHHHHHHHHHh
Q psy7769 281 --SLSPIQNDGVVHMSLKR 297 (355)
Q Consensus 281 --Sl~~~ENE~vV~~~L~~ 297 (355)
+++....+.-+++.|-+
T Consensus 300 ~~~L~~~~~~~~iR~~Ll~ 318 (425)
T d2okca1 300 DNVLFEAGAGETIRKRLLQ 318 (425)
T ss_dssp HHHHHCSTHHHHHHHHHHH
T ss_pred hHHhhhhhhHHHHHHHHHH
Confidence 45444445556666544
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=96.97 E-value=0.00053 Score=61.53 Aligned_cols=35 Identities=14% Similarity=0.017 Sum_probs=27.9
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcC
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGA 198 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~ 198 (355)
++|+.+|+|+||||||.|..++....-..|.|+++
T Consensus 64 ~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~i 98 (257)
T d2p41a1 64 VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTK 98 (257)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECC
T ss_pred ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEe
Confidence 67889999999999999998887643345666666
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=96.94 E-value=0.0004 Score=62.43 Aligned_cols=72 Identities=15% Similarity=0.033 Sum_probs=54.0
Q ss_pred cHHHHHhhCCCCC--CeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccC-----cceEEEEEe
Q psy7769 155 SLLPVLALNIRPY--DTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLD-----IHALKLVKV 225 (355)
Q Consensus 155 S~l~~~~L~~~pG--~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g-----~~~v~~~~~ 225 (355)
....+.+++.++| .+|||++||-|.-+..+|..+ ++|+++|.++... ++.+++|+..-.. ..+++++++
T Consensus 75 ~~~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G--~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~ 152 (250)
T d2oyra1 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_dssp GSHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHT--CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEES
T ss_pred hhHHHHHhcCCCCCCCEEEECCCcccHHHHHHHhCC--CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecC
Confidence 4566777776665 489999999999999999886 7899999999877 7777764320001 147888888
Q ss_pred cce
Q psy7769 226 GGS 228 (355)
Q Consensus 226 Da~ 228 (355)
|+.
T Consensus 153 Ds~ 155 (250)
T d2oyra1 153 SSL 155 (250)
T ss_dssp CHH
T ss_pred cHH
Confidence 764
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=96.94 E-value=0.0011 Score=61.07 Aligned_cols=125 Identities=14% Similarity=0.032 Sum_probs=75.5
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcccc-ccccCcceEEEEEeccee-----
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPY-DTVLDIHALKLVKVGGSV----- 229 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~-~~~~g~~~v~~~~~Da~~----- 229 (355)
++.++.+.| .+||.+|.|.|+.+..++......+|+++|+++.-+ +++.+... ......++++++..||+.
T Consensus 70 ~~l~~~~~p-k~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~ 148 (312)
T d1uira_ 70 PAMLTHPEP-KRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT 148 (312)
T ss_dssp HHHHHSSCC-CEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC
T ss_pred hhhhhCCCc-ceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhc
Confidence 344555555 499999999999887777654457899999999988 55555310 001123578888888754
Q ss_pred --------eecccC-CCCCccCCccccchHHHHhhhhHH--HHHHHHHhhccCCcEEEEEeCCCC--CCCCHHHHHHHHH
Q psy7769 230 --------VYSTCS-LSPIQNDGVVHMSLKRIWEETGCE--IEIKHALKLVKVGGSVVYSTCSLS--PIQNDGVVHMSLK 296 (355)
Q Consensus 230 --------lDaPCS-gsG~t~~~~l~~~~~~l~~l~~lQ--~lL~~A~~~LkpGG~lVYsTCSl~--~~ENE~vV~~~L~ 296 (355)
+|++-. +.+ . + . ..+. +.++.+.+.|+|||.+|.-.-|.. +.+-...+.+.++
T Consensus 149 ~~~yDvIi~D~~dp~~~~----~-----~--~---~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~ 214 (312)
T d1uira_ 149 EERYDVVIIDLTDPVGED----N-----P--A---RLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVR 214 (312)
T ss_dssp CCCEEEEEEECCCCBSTT----C-----G--G---GGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHH
T ss_pred CCcccEEEEeCCCccccc----c-----h--h---hhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHH
Confidence 554321 100 0 0 0 0111 678889999999999987543332 2222233444454
Q ss_pred h
Q psy7769 297 R 297 (355)
Q Consensus 297 ~ 297 (355)
+
T Consensus 215 ~ 215 (312)
T d1uira_ 215 E 215 (312)
T ss_dssp T
T ss_pred H
Confidence 4
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.69 E-value=0.002 Score=53.95 Aligned_cols=51 Identities=12% Similarity=-0.074 Sum_probs=38.8
Q ss_pred HHHhhCCCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh-HHhhc
Q psy7769 158 PVLALNIRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV-LALNI 208 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl-l~~~l 208 (355)
++...+++||++||=++||| |..++++|+..+..+|+++|.++.|+ +.+.+
T Consensus 19 a~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l 71 (174)
T d1jqba2 19 GAELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY 71 (174)
T ss_dssp HHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH
T ss_pred HHHHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh
Confidence 34566899999999988877 55566777766545899999999999 44433
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.59 E-value=0.0026 Score=53.17 Aligned_cols=47 Identities=23% Similarity=0.075 Sum_probs=34.7
Q ss_pred hCCCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh-HHhhc
Q psy7769 162 LNIRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV-LALNI 208 (355)
Q Consensus 162 L~~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl-l~~~l 208 (355)
.++++|++||-.+||| |..++++|...+..+|+++|.++.|+ +.+.+
T Consensus 24 ~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l 72 (182)
T d1vj0a2 24 PESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI 72 (182)
T ss_dssp SSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT
T ss_pred hCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc
Confidence 3578999999998765 44555666665445899999999999 44433
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=96.57 E-value=0.0024 Score=56.69 Aligned_cols=101 Identities=12% Similarity=-0.035 Sum_probs=67.2
Q ss_pred CCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhhHHhhccccccccCcceEEEEEecceeeecccCCCCCccCCc
Q psy7769 165 RPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDGV 244 (355)
Q Consensus 165 ~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rll~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~~~ 244 (355)
....+|||+++|+|..+.++++..+..+++.+|... - ++. . ....+++++.+|... +.-.+ ....-.+
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~-v-----i~~-~--~~~~ri~~~~gd~~~--~~p~~-D~~~l~~ 147 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQ-V-----IEN-A--PPLSGIEHVGGDMFA--SVPQG-DAMILKA 147 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-H-----HTT-C--CCCTTEEEEECCTTT--CCCCE-EEEEEES
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchh-h-----hhc-c--CCCCCeEEecCCccc--ccccc-eEEEEeh
Confidence 445799999999999999999998778899999632 1 221 0 122567888888642 21111 1011112
Q ss_pred -cc-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCC
Q psy7769 245 -VH-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLS 283 (355)
Q Consensus 245 -l~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~ 283 (355)
++ |..+... +||+++.+.|+|||+|+...--+.
T Consensus 148 vLh~~~de~~~------~iL~~~~~aL~pgg~llI~e~v~~ 182 (244)
T d1fp1d2 148 VCHNWSDEKCI------EFLSNCHKALSPNGKVIIVEFILP 182 (244)
T ss_dssp SGGGSCHHHHH------HHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred hhhhCCHHHHH------HHHHHHHHHcCCCcEEEEEEEEec
Confidence 22 6554333 789999999999999998776543
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=96.55 E-value=0.0027 Score=58.10 Aligned_cols=123 Identities=16% Similarity=0.110 Sum_probs=77.7
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee------
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------ 229 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------ 229 (355)
++.++.+.| .+||=+|.|.|+.+..++...+..+|+++|+++.-+ .++.+.........+++.++..||..
T Consensus 82 ~pl~~~~~p-k~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~ 160 (295)
T d1inla_ 82 VPMFLHPNP-KKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFK 160 (295)
T ss_dssp HHHHHSSSC-CEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCS
T ss_pred hhHhhCCCC-ceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCC
Confidence 355666666 499999999998877777654446899999999998 44444310000123678888888754
Q ss_pred -------eecccCCCCCccCCccccchHHHHhhhhH-H-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 230 -------VYSTCSLSPIQNDGVVHMSLKRIWEETGC-E-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 230 -------lDaPCSgsG~t~~~~l~~~~~~l~~l~~l-Q-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
+|++....|. ...+ . +.++.+.+.|+|||.+|.-+-| |.-+...+..+++..
T Consensus 161 ~~yDvIi~D~~dp~~~~---------------~~~L~t~efy~~~~~~L~~~Gi~v~q~~s--p~~~~~~~~~i~~tl 221 (295)
T d1inla_ 161 NEFDVIIIDSTDPTAGQ---------------GGHLFTEEFYQACYDALKEDGVFSAETED--PFYDIGWFKLAYRRI 221 (295)
T ss_dssp SCEEEEEEEC-------------------------CCSHHHHHHHHHHEEEEEEEEEECCC--TTTTHHHHHHHHHHH
T ss_pred CCCCEEEEcCCCCCcCc---------------hhhhccHHHHHHHHhhcCCCcEEEEecCC--hhhhhHHHHHHHHHH
Confidence 6655421110 0011 1 7788999999999999876444 345666666666543
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=96.53 E-value=0.0067 Score=54.67 Aligned_cols=123 Identities=15% Similarity=0.006 Sum_probs=79.6
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-------
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------- 229 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------- 229 (355)
+..+.+.| .+||-+|.|.|+.+..++...+..+|+++|+++.-+ +++.+.........+++.++..||..
T Consensus 69 ~l~~~~~p-~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~ 147 (274)
T d1iy9a_ 69 PLFTHPNP-EHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSEN 147 (274)
T ss_dssp HHHHSSSC-CEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCS
T ss_pred hhhccCCc-ceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCC
Confidence 44445544 599999999999888877654447999999999988 44444200000233678888888754
Q ss_pred ------eecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 230 ------VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 230 ------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
+|++.. .|.. .+ .++. +..+.+.+.|+|||.+|.-+ -++.-+...+..+++..
T Consensus 148 ~yDvIi~D~~~p-~~~~--~~-L~t~----------eFy~~~~~~L~~~Gv~v~q~--~s~~~~~~~~~~i~~tl 206 (274)
T d1iy9a_ 148 QYDVIMVDSTEP-VGPA--VN-LFTK----------GFYAGIAKALKEDGIFVAQT--DNPWFTPELITNVQRDV 206 (274)
T ss_dssp CEEEEEESCSSC-CSCC--CC-CSTT----------HHHHHHHHHEEEEEEEEEEC--CCTTTCHHHHHHHHHHH
T ss_pred CCCEEEEcCCCC-CCcc--hh-hccH----------HHHHHHHhhcCCCceEEEec--CCccccHHHHHHHHHhh
Confidence 776652 1210 00 0111 66888899999999998653 34455677777666654
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.51 E-value=0.0021 Score=54.02 Aligned_cols=49 Identities=8% Similarity=-0.080 Sum_probs=38.1
Q ss_pred HhhCCCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh-HHhhc
Q psy7769 160 LALNIRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV-LALNI 208 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl-l~~~l 208 (355)
...++++|++||=++||| |..+++++...+..+|++.|.++.|+ +.+.+
T Consensus 22 ~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~ 72 (174)
T d1e3ia2 22 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL 72 (174)
T ss_dssp TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred HhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh
Confidence 456789999999999988 44556677776656899999999999 54444
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=96.46 E-value=0.00078 Score=66.25 Aligned_cols=145 Identities=12% Similarity=0.014 Sum_probs=86.0
Q ss_pred EEEechhcHHHHHhhCCCCCCeEeeecccCcchHHHHHHhcC------------------CCcEEEEcCCchhh--HHhh
Q psy7769 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLY------------------PDYYCMDGASLLPV--LALN 207 (355)
Q Consensus 148 ~~~QD~aS~l~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~------------------~g~V~AvD~s~~Rl--l~~~ 207 (355)
||--..-+.+.+.++.|++|++|+|-|||+|+..+.+...+. ...+++.|+++... ++-|
T Consensus 146 fyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~n 225 (524)
T d2ar0a1 146 YFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMN 225 (524)
T ss_dssp CCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHH
T ss_pred hccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHH
Confidence 554444456777889999999999999999999887765421 13689999999877 3333
Q ss_pred ccccccccCc---ceEEE-----------EEecceeeecccCCCCCccCCccccchHHHHhhhhHH-HHHHHHHhhccCC
Q psy7769 208 IRPYDTVLDI---HALKL-----------VKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCE-IEIKHALKLVKVG 272 (355)
Q Consensus 208 l~r~~~~~g~---~~v~~-----------~~~Da~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpG 272 (355)
+--...-... ..+.. ..+|...-.||-+.... ....-.+.+ .....+ -.+.++++.|++|
T Consensus 226 l~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~-~~~~~~~~~----~~~~~~~~Fi~~~l~~Lk~g 300 (524)
T d2ar0a1 226 CLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAG-TNITRTFVH----PTSNKQLCFMQHIIETLHPG 300 (524)
T ss_dssp HHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSS-CCCCSCCSS----CCSCHHHHHHHHHHHHEEEE
T ss_pred HHhhcccccccccchhhhhhhhhhcccccccceeEEecCCcccccc-ccchhhhcc----ccccccHHHHHHHHHhcccc
Confidence 3200100000 11111 12455557888854331 111100000 111223 5699999999999
Q ss_pred cEEEEEeC-CC-CCCCCHHHHHHHHHh
Q psy7769 273 GSVVYSTC-SL-SPIQNDGVVHMSLKR 297 (355)
Q Consensus 273 G~lVYsTC-Sl-~~~ENE~vV~~~L~~ 297 (355)
|++++.+- ++ +..-.+..+++.|-+
T Consensus 301 Gr~aiIlP~~~Lf~~~~~~~iR~~Ll~ 327 (524)
T d2ar0a1 301 GRAAVVVPDNVLFEGGKGTDIRRDLMD 327 (524)
T ss_dssp EEEEEEEEHHHHHCCTHHHHHHHHHHH
T ss_pred CcEEEEEehHHhhhhhhhHHHHHHHHH
Confidence 99999875 44 344445667776654
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.45 E-value=0.008 Score=49.47 Aligned_cols=50 Identities=16% Similarity=0.034 Sum_probs=37.1
Q ss_pred HHhhCCCCCCeEeeecccCcchHH-HHHHhcCCCcEEEEcCCchhh-HHhhc
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTL-VALQTLYPDYYCMDGASLLPV-LALNI 208 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~-~la~~~~~g~V~AvD~s~~Rl-l~~~l 208 (355)
+...+++||+.||=++|||.|... +++...+..+|+++|.++.|+ +.+.+
T Consensus 19 ~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~ 70 (171)
T d1pl8a2 19 CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI 70 (171)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred HHHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh
Confidence 345579999999999998877654 444554445899999999999 44443
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.37 E-value=0.0087 Score=48.99 Aligned_cols=43 Identities=19% Similarity=0.133 Sum_probs=32.3
Q ss_pred HhhCCCCCCeEeeecccCcchH-HHHHHhcCCCcEEEEcCCchhh
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKT-LVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT-~~la~~~~~g~V~AvD~s~~Rl 203 (355)
...++++|++||-+++||-|.. +++|...+ .+|+++|.++.|+
T Consensus 20 ~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G-a~vi~v~~~~~r~ 63 (170)
T d1e3ja2 20 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYG-AFVVCTARSPRRL 63 (170)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHH
T ss_pred HHhCCCCCCEEEEEcccccchhhHhhHhhhc-ccccccchHHHHH
Confidence 4457899999999887754443 34454443 7999999999999
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.24 E-value=0.0094 Score=54.81 Aligned_cols=122 Identities=11% Similarity=-0.064 Sum_probs=76.7
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee------
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------ 229 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------ 229 (355)
++.++.+.| .+||-+|.|.|+.+..++...+-.+|+++|+++.-+ +++.+.........++++++..||..
T Consensus 99 ~pl~~~~~p-k~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~ 177 (312)
T d2b2ca1 99 LPMFAHPDP-KRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHK 177 (312)
T ss_dssp HHHHHSSSC-CEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCT
T ss_pred HHHhcCCCC-CeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCC
Confidence 445556655 489999999999887777654336899999999998 45544311101123678888888754
Q ss_pred -------eecccCCCCCccCCccccchHHHHhhhhHH--HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 230 -------VYSTCSLSPIQNDGVVHMSLKRIWEETGCE--IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 230 -------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ--~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
+|++-. .| ....+- +.++.+.+.|+|||.+|.-+= ++..+...+...++..
T Consensus 178 ~~yDvII~D~~dp-~~---------------~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~--s~~~~~~~~~~i~~~l 237 (312)
T d2b2ca1 178 NEFDVIITDSSDP-VG---------------PAESLFGQSYYELLRDALKEDGILSSQGE--SVWLHLPLIAHLVAFN 237 (312)
T ss_dssp TCEEEEEECCC-----------------------------HHHHHHHHEEEEEEEEEECC--CTTTCHHHHHHHHHHH
T ss_pred CCCCEEEEcCCCC-CC---------------cchhhhhHHHHHHHHhhcCCCcEEEEecC--ChHHhHHHHHHHHHHh
Confidence 555431 11 011122 678889999999999987633 3345666666666544
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.16 E-value=0.0081 Score=49.07 Aligned_cols=90 Identities=16% Similarity=0.080 Sum_probs=57.1
Q ss_pred HHhhCCCCCCeEeeecccCcchHH-HHHHhcCCCcEEEEcCCchhh-HHhhccccccccCcceEEEEEe-----------
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTL-VALQTLYPDYYCMDGASLLPV-LALNIRPYDTVLDIHALKLVKV----------- 225 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~-~la~~~~~g~V~AvD~s~~Rl-l~~~l~r~~~~~g~~~v~~~~~----------- 225 (355)
+...+++||++||=.+|||=|... +++...+ .+|+++|.++.|+ +.+.+- .. .++..
T Consensus 20 l~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G-~~Vi~~~~~~~~~~~a~~~G-------a~--~~i~~~~~~~~~~~~~ 89 (166)
T d1llua2 20 LKQTNARPGQWVAISGIGGLGHVAVQYARAMG-LHVAAIDIDDAKLELARKLG-------AS--LTVNARQEDPVEAIQR 89 (166)
T ss_dssp HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHTT-------CS--EEEETTTSCHHHHHHH
T ss_pred HHHhCCCCCCEEEEeeccccHHHHHHHHHHcC-CccceecchhhHHHhhhccC-------cc--ccccccchhHHHHHHH
Confidence 345679999999998877655433 4455444 7999999999998 433322 11 11111
Q ss_pred --cceeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 226 --GGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 226 --Da~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
.+.....-|++.+ ..+..++++|++||++|..-
T Consensus 90 ~~~g~~~~i~~~~~~---------------------~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 90 DIGGAHGVLVTAVSN---------------------SAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp HHSSEEEEEECCSCH---------------------HHHHHHHTTEEEEEEEEECC
T ss_pred hhcCCcccccccccc---------------------hHHHHHHHHhcCCcEEEEEE
Confidence 1111333354433 45888999999999998754
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=96.08 E-value=0.015 Score=50.94 Aligned_cols=100 Identities=11% Similarity=0.005 Sum_probs=68.3
Q ss_pred CCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhhHHhhccccccccCcceEEEEEecceeeecccCCCCCccCCc-c
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDGV-V 245 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rll~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~~~-l 245 (355)
..+|||+++|.|..+..+++..+..+++..|.... + .... ...++.++.+|... +.|. +-. ..-++ +
T Consensus 82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i--~~~~------~~~r~~~~~~d~~~-~~P~-ad~-~~l~~vl 149 (243)
T d1kyza2 82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-I--EDAP------SYPGVEHVGGDMFV-SIPK-ADA-VFMKWIC 149 (243)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-T--TTCC------CCTTEEEEECCTTT-CCCC-CSC-EECSSSS
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-h--hhcc------cCCceEEecccccc-cCCC-cce-EEEEEEe
Confidence 46899999999999999999988789999998542 1 1111 12457888888643 2343 111 11222 2
Q ss_pred c-cchHHHHhhhhHHHHHHHHHhhccCCcEEEEEeCCCCC
Q psy7769 246 H-MSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTCSLSP 284 (355)
Q Consensus 246 ~-~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsTCSl~~ 284 (355)
+ |..+... .||+++.+.|+|||+++....-+..
T Consensus 150 h~~~d~~~~------~iL~~~~~al~pgg~~li~d~~~~~ 183 (243)
T d1kyza2 150 HDWSDEHCL------KFLKNCYEALPDNGKVIVAECILPV 183 (243)
T ss_dssp TTSCHHHHH------HHHHHHHHHCCSSSCEEEEECEECS
T ss_pred ecCCHHHHH------HHHHHHHHhcCCCceEEEEEEEecC
Confidence 2 6554332 7899999999999999988766543
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.83 E-value=0.016 Score=52.04 Aligned_cols=121 Identities=17% Similarity=-0.015 Sum_probs=74.6
Q ss_pred HHHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcccccc------ccCcceEEEEEeccee
Q psy7769 158 PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDT------VLDIHALKLVKVGGSV 229 (355)
Q Consensus 158 ~~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~------~~g~~~v~~~~~Da~~ 229 (355)
++..+.++| .+||-+|.|.|+.+.+++.. +..+|+++|+++.-+ +++.+.-... ....++++++..||..
T Consensus 65 ~~l~~~~~p-~~vLiiG~G~G~~~~~~l~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~ 142 (276)
T d1mjfa_ 65 PAMLAHPKP-KRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFE 142 (276)
T ss_dssp HHHHHSSCC-CEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHH
T ss_pred chhhcCCCC-ceEEEecCCchHHHHHHHHh-CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHH
Confidence 334445544 59999999999988777653 336899999999998 4443320000 0113568888888753
Q ss_pred ------------eecccCCCCCccCCccccchHHHHhhhhHH--HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHH
Q psy7769 230 ------------VYSTCSLSPIQNDGVVHMSLKRIWEETGCE--IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSL 295 (355)
Q Consensus 230 ------------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ--~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L 295 (355)
+|++.. .|. + ..+. +.++.+.+.|+|||.+|.-.=| +.-+...+..++
T Consensus 143 ~l~~~~~yDvIi~D~~~~-~~~---------~------~~L~t~eF~~~~~~~L~~~Gv~v~q~~s--~~~~~~~~~~~~ 204 (276)
T d1mjfa_ 143 FIKNNRGFDVIIADSTDP-VGP---------A------KVLFSEEFYRYVYDALNNPGIYVTQAGS--VYLFTDELISAY 204 (276)
T ss_dssp HHHHCCCEEEEEEECCCC-C--------------------TTSHHHHHHHHHHEEEEEEEEEEEEE--TTTSHHHHHHHH
T ss_pred HHhccCCCCEEEEeCCCC-CCC---------c------ccccCHHHHHhhHhhcCCCceEEEecCC--cchhHHHHHHHH
Confidence 666651 120 0 1111 6788899999999998864322 334555556555
Q ss_pred Hhh
Q psy7769 296 KRI 298 (355)
Q Consensus 296 ~~~ 298 (355)
+..
T Consensus 205 ~tl 207 (276)
T d1mjfa_ 205 KEM 207 (276)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.76 E-value=0.016 Score=52.50 Aligned_cols=121 Identities=14% Similarity=0.005 Sum_probs=78.9
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-------
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------- 229 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------- 229 (355)
+.++.+.| .+||=+|.|.|+.+-.++...+-.+|+++|+++.-+ +++.+.........++++++..||..
T Consensus 74 ~~~~~~~p-k~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~ 152 (290)
T d1xj5a_ 74 PLCSIPNP-KKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAE 152 (290)
T ss_dssp HHTTSSCC-CEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCT
T ss_pred HHhhCCCC-cceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccc
Confidence 33444555 489999999999887776654446899999999998 44443200000123667888888753
Q ss_pred -------eecccCCCCCccCCccccchHHHHhhhhHH--HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 230 -------VYSTCSLSPIQNDGVVHMSLKRIWEETGCE--IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 230 -------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ--~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
+|++-. .|. -..+. +.++.+.+.|+|||.+|.-+-| +..+...+..+++..
T Consensus 153 ~~yDvIi~D~~dp-~~~---------------~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s--~~~~~~~~~~i~~~l 212 (290)
T d1xj5a_ 153 GSYDAVIVDSSDP-IGP---------------AKELFEKPFFQSVARALRPGGVVCTQAES--LWLHMDIIEDIVSNC 212 (290)
T ss_dssp TCEEEEEECCCCT-TSG---------------GGGGGSHHHHHHHHHHEEEEEEEEEECCC--TTTCHHHHHHHHHHH
T ss_pred cCccEEEEcCCCC-CCc---------------chhhCCHHHHHHHHHhcCCCcEEEEecCC--cHHHHHHHHHHHhhh
Confidence 554431 110 11222 6788899999999999997655 445777777776654
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.63 E-value=0.0063 Score=49.56 Aligned_cols=92 Identities=16% Similarity=0.076 Sum_probs=57.0
Q ss_pred HhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh-HHhhccccccccCcceEEEE-E----------ecc
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV-LALNIRPYDTVLDIHALKLV-K----------VGG 227 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl-l~~~l~r~~~~~g~~~v~~~-~----------~Da 227 (355)
...+++||++||=.+|||-|............+|++.|.+++|+ ..+.+- ...+... . .++
T Consensus 21 ~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~G-------a~~~~~~~~~~~~~~~~~~~~~ 93 (168)
T d1rjwa2 21 KVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELG-------ADLVVNPLKEDAAKFMKEKVGG 93 (168)
T ss_dssp HHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CSEEECTTTSCHHHHHHHHHSS
T ss_pred HHhCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcC-------cceecccccchhhhhcccccCC
Confidence 35579999999998888777654333223346899999999999 333332 1111000 0 011
Q ss_pred eeeecccCCCCCccCCccccchHHHHhhhhHHHHHHHHHhhccCCcEEEEEe
Q psy7769 228 SVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYST 279 (355)
Q Consensus 228 ~~lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ~lL~~A~~~LkpGG~lVYsT 279 (355)
...+.-|++.+ ..+..+++.++|||+++..-
T Consensus 94 ~~~~v~~~~~~---------------------~~~~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 94 VHAAVVTAVSK---------------------PAFQSAYNSIRRGGACVLVG 124 (168)
T ss_dssp EEEEEESSCCH---------------------HHHHHHHHHEEEEEEEEECC
T ss_pred CceEEeecCCH---------------------HHHHHHHHHhccCCceEecc
Confidence 12333344333 56889999999999999854
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.61 E-value=0.016 Score=52.37 Aligned_cols=121 Identities=10% Similarity=-0.084 Sum_probs=75.9
Q ss_pred HHhhCCCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee-------
Q psy7769 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------- 229 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------- 229 (355)
+.++.+.| .+||-+|.|.|+.+-.++..-+..+|+++|+++.-+ +++.+.........+++.++..||+.
T Consensus 72 ~l~~~~~p-k~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~ 150 (285)
T d2o07a1 72 PLCSHPNP-RKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQD 150 (285)
T ss_dssp HHTTSSSC-CEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSS
T ss_pred hhhhCcCc-CeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCC
Confidence 44455555 599999999999888877654447999999999998 44444200000223678888888764
Q ss_pred ------eecccCCCCCccCCccccchHHHHhhhhHH--HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 230 ------VYSTCSLSPIQNDGVVHMSLKRIWEETGCE--IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 230 ------lDaPCSgsG~t~~~~l~~~~~~l~~l~~lQ--~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
+|++-. .| .-..+. +.++.+.+.|+|||.+|.-+-|. .-+...+..+++..
T Consensus 151 ~yDvIi~D~~~p-~~---------------~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~--~~~~~~~~~~~~tl 209 (285)
T d2o07a1 151 AFDVIITDSSDP-MG---------------PAESLFKESYYQLMKTALKEDGVLCCQGECQ--WLHLDLIKEMRQFC 209 (285)
T ss_dssp CEEEEEEECC---------------------------CHHHHHHHHHEEEEEEEEEEEECT--TTCHHHHHHHHHHH
T ss_pred CCCEEEEcCCCC-CC---------------cccccccHHHHHHHHHhcCCCCeEEEeccch--hhhHHHHHHHHHHH
Confidence 444321 11 011222 77889999999999998864333 33555666555443
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=95.51 E-value=0.017 Score=50.78 Aligned_cols=96 Identities=11% Similarity=0.001 Sum_probs=64.1
Q ss_pred CCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhhHHhhccccccccCcceEEEEEecceeeecccCCCCCccCCc-c
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDGV-V 245 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rll~~~l~r~~~~~g~~~v~~~~~Da~~lDaPCSgsG~t~~~~-l 245 (355)
..+|||+|+|.|..+..+++..+..+++..|... .++.. ....+++++.+|... +.| +..+..-++ +
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~------vi~~~---~~~~rv~~~~gD~f~-~~p--~aD~~~l~~vL 148 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQ------VVENL---SGSNNLTYVGGDMFT-SIP--NADAVLLKYIL 148 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH------HHTTC---CCBTTEEEEECCTTT-CCC--CCSEEEEESCG
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecCHH------HHHhC---cccCceEEEecCccc-CCC--CCcEEEEEeec
Confidence 4589999999999999999998778999999742 12211 123578999999753 122 111111122 3
Q ss_pred c-cchHHHHhhhhHHHHHHHHHhhccCC---cEEEEEeC
Q psy7769 246 H-MSLKRIWEETGCEIEIKHALKLVKVG---GSVVYSTC 280 (355)
Q Consensus 246 ~-~~~~~l~~l~~lQ~lL~~A~~~LkpG---G~lVYsTC 280 (355)
+ |..+... +||+++.+.|+|| |+++...=
T Consensus 149 Hdw~d~~~~------~iL~~~~~al~pgg~~~~lli~e~ 181 (244)
T d1fp2a2 149 HNWTDKDCL------RILKKCKEAVTNDGKRGKVTIIDM 181 (244)
T ss_dssp GGSCHHHHH------HHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred ccCChHHHH------HHHHHHHHHcCcccCCcEEEEEEe
Confidence 3 6655433 7899999999998 66666543
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.40 E-value=0.021 Score=47.15 Aligned_cols=48 Identities=19% Similarity=0.115 Sum_probs=35.4
Q ss_pred HhhCCCCCCeEeeecccCcchH-HHHHHhcCCCcEEEEcCCchhh-HHhh
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKT-LVALQTLYPDYYCMDGASLLPV-LALN 207 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT-~~la~~~~~g~V~AvD~s~~Rl-l~~~ 207 (355)
..++++||++||=++||+-|.. ++++...+...|++.|.++.|+ +.+.
T Consensus 22 ~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~ 71 (174)
T d1f8fa2 22 NALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ 71 (174)
T ss_dssp TTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH
T ss_pred HhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHH
Confidence 4457999999999888766643 4556565556789999999998 4333
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.99 E-value=0.015 Score=53.41 Aligned_cols=74 Identities=14% Similarity=0.072 Sum_probs=54.3
Q ss_pred Eechh-cHHHHHhhCCC------CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceE
Q psy7769 150 CMDGA-SLLPVLALNIR------PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHAL 220 (355)
Q Consensus 150 ~QD~a-S~l~~~~L~~~------pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v 220 (355)
+-|+. ..-++..+++. .++.|||++.|+|..|.+|+......+|+|+|.++.-+ |++.+. + .++
T Consensus 20 L~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~------~-~~~ 92 (322)
T d1i4wa_ 20 LWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE------G-SPL 92 (322)
T ss_dssp BCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT------T-SSC
T ss_pred cCCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc------C-CCc
Confidence 33443 33445555543 46789999999999999999887556899999999877 666544 2 457
Q ss_pred EEEEecceee
Q psy7769 221 KLVKVGGSVV 230 (355)
Q Consensus 221 ~~~~~Da~~l 230 (355)
.+++.|+...
T Consensus 93 ~ii~~D~l~~ 102 (322)
T d1i4wa_ 93 QILKRDPYDW 102 (322)
T ss_dssp EEECSCTTCH
T ss_pred EEEeCchhhc
Confidence 8888998653
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=94.40 E-value=0.042 Score=45.00 Aligned_cols=41 Identities=12% Similarity=0.019 Sum_probs=33.1
Q ss_pred CCCCCCeEeeecccCcchH-HHHHHhcCCCcEEEEcCCchhh
Q psy7769 163 NIRPYDTVLDMCAAPGGKT-LVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 163 ~~~pG~~VLD~CAgPGgKT-~~la~~~~~g~V~AvD~s~~Rl 203 (355)
.++||+.||=.+||+.|.. .+++...+...|+++|.++.|+
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~ 70 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKL 70 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHH
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHH
Confidence 4689999999998887765 4566666557899999999998
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.18 E-value=0.042 Score=45.38 Aligned_cols=49 Identities=12% Similarity=-0.014 Sum_probs=37.6
Q ss_pred HhhCCCCCCeEeeecccCcchHH-HHHHhcCCCcEEEEcCCchhh-HHhhc
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKTL-VALQTLYPDYYCMDGASLLPV-LALNI 208 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT~-~la~~~~~g~V~AvD~s~~Rl-l~~~l 208 (355)
...+++||++||=++||+.|... +++...+..+|+++|.+++|+ +.+.+
T Consensus 21 ~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l 71 (174)
T d1p0fa2 21 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL 71 (174)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT
T ss_pred HhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc
Confidence 34579999999999998877654 455666557899999999999 54443
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=94.04 E-value=0.057 Score=47.20 Aligned_cols=57 Identities=16% Similarity=0.113 Sum_probs=41.1
Q ss_pred CCCCCeEeeecccCcchHHHHHHhc----CCCcEEEEcCCchhh-HHhhccccccccCcceEEEEEeccee
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTL----YPDYYCMDGASLLPV-LALNIRPYDTVLDIHALKLVKVGGSV 229 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~----~~g~V~AvD~s~~Rl-l~~~l~r~~~~~g~~~v~~~~~Da~~ 229 (355)
.+|. +||.+|++.|+-++.++..+ .+++|+++|+++.+. .... ..+++.+..+|...
T Consensus 79 ~KPk-~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~--------~~~~I~~i~gDs~~ 140 (232)
T d2bm8a1 79 LRPR-TIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS--------DMENITLHQGDCSD 140 (232)
T ss_dssp HCCS-EEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG--------GCTTEEEEECCSSC
T ss_pred hCCC-EEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc--------cccceeeeeccccc
Confidence 4444 89999999999888777543 359999999998765 2111 12467888888654
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.94 E-value=0.047 Score=45.23 Aligned_cols=49 Identities=8% Similarity=-0.029 Sum_probs=37.4
Q ss_pred HhhCCCCCCeEeeecccCcchHH-HHHHhcCCCcEEEEcCCchhh-HHhhc
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKTL-VALQTLYPDYYCMDGASLLPV-LALNI 208 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT~-~la~~~~~g~V~AvD~s~~Rl-l~~~l 208 (355)
...++++|+.||=.+||+.|... +++...+..+|+++|.+++|+ +.+.+
T Consensus 23 ~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~ 73 (176)
T d1d1ta2 23 KTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV 73 (176)
T ss_dssp TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred HhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence 34568999999999998877654 445555557899999999999 55544
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=93.31 E-value=0.25 Score=40.06 Aligned_cols=43 Identities=5% Similarity=-0.150 Sum_probs=33.9
Q ss_pred hhCCCCCCeEeeecccCcchHH-HHHHhcCCCcEEEEcCCchhh
Q psy7769 161 ALNIRPYDTVLDMCAAPGGKTL-VALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgPGgKT~-~la~~~~~g~V~AvD~s~~Rl 203 (355)
..+++||++||=.+||++|-+. +++......+|+++|.+++|+
T Consensus 23 ~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~ 66 (176)
T d2jhfa2 23 VAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKF 66 (176)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH
T ss_pred hhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHH
Confidence 4479999999999887766543 445555557999999999999
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.30 E-value=0.07 Score=43.26 Aligned_cols=45 Identities=16% Similarity=0.038 Sum_probs=33.7
Q ss_pred HHhhCCCCCCeEeeecc-cCcch-HHHHHHhcCCCcEEEEcCCchhh
Q psy7769 159 VLALNIRPYDTVLDMCA-APGGK-TLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 159 ~~~L~~~pG~~VLD~CA-gPGgK-T~~la~~~~~g~V~AvD~s~~Rl 203 (355)
+...+++||++||=.++ |+.|. +++++...+...|+++|.++.|+
T Consensus 20 l~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~ 66 (170)
T d1jvba2 20 VRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAV 66 (170)
T ss_dssp HHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHH
T ss_pred HHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhH
Confidence 44567999999999985 55544 34455555556899999999998
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=92.76 E-value=0.21 Score=40.28 Aligned_cols=48 Identities=6% Similarity=-0.094 Sum_probs=35.2
Q ss_pred hhCCCCCCeEeeecccCcch-HHHHHHhcCCCcEEEEcCCchhh-HHhhc
Q psy7769 161 ALNIRPYDTVLDMCAAPGGK-TLVALQTLYPDYYCMDGASLLPV-LALNI 208 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgPGgK-T~~la~~~~~g~V~AvD~s~~Rl-l~~~l 208 (355)
..+++||++||=.+||+.|. +++++..+....|++.|.++.|+ +.+.+
T Consensus 23 ~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l 72 (176)
T d2fzwa2 23 TAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF 72 (176)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH
T ss_pred hhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh
Confidence 45799999999887775444 34566666557899999999998 44433
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=92.28 E-value=0.063 Score=47.19 Aligned_cols=44 Identities=14% Similarity=0.053 Sum_probs=33.7
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
-.+|+.|||-+||+|..+ ++|..++ -+-+++|+++..+ +++++.
T Consensus 248 s~~gdiVlDpF~GSGTT~-~AA~~lg-R~~Ig~El~~~y~~~a~~Rl~ 293 (320)
T d1booa_ 248 TEPDDLVVDIFGGSNTTG-LVAERES-RKWISFEMKPEYVAASAFRFL 293 (320)
T ss_dssp CCTTCEEEETTCTTCHHH-HHHHHTT-CEEEEEESCHHHHHHHHGGGS
T ss_pred ccCCCEEEecCCCCcHHH-HHHHHcC-CcEEEEeCCHHHHHHHHHHHH
Confidence 368999999999999744 3343332 5799999999988 666666
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=92.16 E-value=0.058 Score=46.07 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=33.4
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
-.+|+.|||-+||+|..+ .+|..++ -+-+++|+++.-+ ++++++
T Consensus 210 s~~gd~VlDpF~GSGTT~-~aa~~~~-R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 210 SNPNDLVLDCFMGSGTTA-IVAKKLG-RNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp CCTTCEEEESSCTTCHHH-HHHHHTT-CEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCCEEEECCCCchHHH-HHHHHcC-CeEEEEeCCHHHHHHHHHHHc
Confidence 368999999999999744 4444432 5789999999988 666654
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.15 E-value=0.059 Score=46.67 Aligned_cols=44 Identities=18% Similarity=0.054 Sum_probs=34.5
Q ss_pred CCCCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhcc
Q psy7769 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 164 ~~pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~ 209 (355)
-.+|+.|||.+||+|..+ ++|..++ -+-+++|+++.-+ ++++++
T Consensus 205 s~~gdiVLDpF~GSGTT~-~Aa~~lg-R~~ig~El~~~y~~~a~~Ri~ 250 (279)
T d1eg2a_ 205 SHPGSTVLDFFAGSGVTA-RVAIQEG-RNSICTDAAPVFKEYYQKQLT 250 (279)
T ss_dssp SCTTCEEEETTCTTCHHH-HHHHHHT-CEEEEEESSTHHHHHHHHHHH
T ss_pred cCCCCEEEecCCCCcHHH-HHHHHhC-CeEEEEeCCHHHHHHHHHHHH
Confidence 468999999999999744 4444443 4799999999988 777776
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=92.05 E-value=0.081 Score=44.42 Aligned_cols=38 Identities=11% Similarity=-0.107 Sum_probs=27.4
Q ss_pred CCCeEeeecccCcchHHHHHH----hcC----CCcEEEEcCCchhh
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQ----TLY----PDYYCMDGASLLPV 203 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~----~~~----~g~V~AvD~s~~Rl 203 (355)
+.-+||+++||+|-=+--||. ... .-+|+|.|+++..+
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l 69 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVL 69 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHH
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHh
Confidence 344999999999986544432 221 13699999999998
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=91.35 E-value=0.12 Score=41.93 Aligned_cols=48 Identities=8% Similarity=-0.083 Sum_probs=36.6
Q ss_pred hhCCCCCCeEeeecccCcchHH-HHHHhcCCCcEEEEcCCchhh-HHhhc
Q psy7769 161 ALNIRPYDTVLDMCAAPGGKTL-VALQTLYPDYYCMDGASLLPV-LALNI 208 (355)
Q Consensus 161 ~L~~~pG~~VLD~CAgPGgKT~-~la~~~~~g~V~AvD~s~~Rl-l~~~l 208 (355)
..+++||++||=.++|+++-.. +++.......|+++|.+++|+ +.+.+
T Consensus 23 ~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~ 72 (175)
T d1cdoa2 23 TAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF 72 (175)
T ss_dssp TTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred hhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc
Confidence 4579999999999999966654 445555557899999999999 44433
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=91.16 E-value=0.21 Score=40.68 Aligned_cols=43 Identities=14% Similarity=0.066 Sum_probs=30.3
Q ss_pred HhhCCCCCCeEeeecc-cC-cchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 160 LALNIRPYDTVLDMCA-AP-GGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CA-gP-GgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
...+++||++||=.++ |+ |..++++|...+ .+|++++.+++++
T Consensus 21 ~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G-~~vi~~~~~~~~~ 65 (171)
T d1iz0a2 21 KRAQARPGEKVLVQAAAGALGTAAVQVARAMG-LRVLAAASRPEKL 65 (171)
T ss_dssp HHTTCCTTCEEEESSTTBHHHHHHHHHHHHTT-CEEEEEESSGGGS
T ss_pred HHhCCCCCCEEEEEeccccchhhhhhhhcccc-ccccccccccccc
Confidence 3346899999998775 33 333445565543 6899999998887
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.14 E-value=0.26 Score=39.94 Aligned_cols=40 Identities=13% Similarity=0.035 Sum_probs=27.7
Q ss_pred CCCCCCeEeeec--ccCcchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 163 NIRPYDTVLDMC--AAPGGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 163 ~~~pG~~VLD~C--AgPGgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
++++|++||=.+ .|-|..++++|...+ .+|++...++++.
T Consensus 22 ~~~~g~~VlI~ga~g~vG~~~iqla~~~g-~~vi~~~~~~~~~ 63 (183)
T d1pqwa_ 22 RLSPGERVLIHSATGGVGMAAVSIAKMIG-ARIYTTAGSDAKR 63 (183)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHHT-CEEEEEESSHHHH
T ss_pred CCCCCCEEEEECCCCCcccccchhhcccc-ccceeeecccccc
Confidence 688999999754 333444556665543 6888888888777
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.08 E-value=0.18 Score=40.98 Aligned_cols=41 Identities=10% Similarity=-0.134 Sum_probs=29.6
Q ss_pred hCCCCCCeEeeecc-c-CcchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCA-A-PGGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CA-g-PGgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
.+++||++||-.+| | -|..++++|..++ .+|++.+.+++++
T Consensus 24 ~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G-~~vi~~~~~~~~~ 66 (174)
T d1yb5a2 24 ACVKAGESVLVHGASGGVGLAACQIARAYG-LKILGTAGTEEGQ 66 (174)
T ss_dssp SCCCTTCEEEEETCSSHHHHHHHHHHHHTT-CEEEEEESSHHHH
T ss_pred hCCCCCCEEEEEeccccccccccccccccC-ccccccccccccc
Confidence 36889999999886 2 3333455665553 6899999888877
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=90.92 E-value=0.38 Score=39.22 Aligned_cols=42 Identities=17% Similarity=-0.046 Sum_probs=29.3
Q ss_pred HhhCCCCCCeEeeecccCcchHH---HHHHhcCCCcEEEEcCCchhh
Q psy7769 160 LALNIRPYDTVLDMCAAPGGKTL---VALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgKT~---~la~~~~~g~V~AvD~s~~Rl 203 (355)
...+++||++||=.+|+ |+... ++|... ..+|++...+++++
T Consensus 23 ~~~~v~~G~~VlV~ga~-ggvG~~aiqlak~~-Ga~vi~~~~~~~~~ 67 (182)
T d1v3va2 23 EVCGVKGGETVLVSAAA-GAVGSVVGQIAKLK-GCKVVGAAGSDEKI 67 (182)
T ss_dssp TTTCCCSSCEEEESSTT-SHHHHHHHHHHHHT-TCEEEEEESSHHHH
T ss_pred HHhCCCCCCEEEEEeCC-CchhHHHHHHHHcc-CCEEEEeCCCHHHH
Confidence 35578999999955554 43343 445544 37999999998887
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=90.89 E-value=0.2 Score=43.86 Aligned_cols=124 Identities=12% Similarity=0.003 Sum_probs=66.8
Q ss_pred CeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceE---EEEEecceeeecccCCCCCccC
Q psy7769 168 DTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHAL---KLVKVGGSVVYSTCSLSPIQND 242 (355)
Q Consensus 168 ~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v---~~~~~Da~~lDaPCSgsG~t~~ 242 (355)
.+|||++||.||.+..+-+.+- -.|.|+|+++... .+.|....-....+..+ .+-..|....-+||.++-..+.
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~-~~~~a~e~d~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~dll~~g~PCq~fS~ag~ 79 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESNHSAKLIKGDISKISSDEFPKCDGIIGGPPCQSWSEGGS 79 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTC-EEEEEEECCHHHHHHHHHHCCSEEEESCTTTSCGGGSCCCSEEEECCCCTTTSSSSC
T ss_pred CeEEEeCcCcCHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHHCCCCCccCChhhCCHhHcccccEEeecccccccccccc
Confidence 4799999999999887766542 2467999999888 56665410000000000 0112233446789987754333
Q ss_pred CccccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 243 GVVHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 243 ~~l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
+.-...+ ...+- ++++ .++.++|--.++=..-.+....+......++...
T Consensus 80 ~~g~~d~-----r~~l~~~~~~-~i~~~~Pk~~~lENV~~~~~~~~~~~~~~~l~~l 130 (324)
T d1dcta_ 80 LRGIDDP-----RGKLFYEYIR-ILKQKKPIFFLAENVKGMMAQRHNKAVQEFIQEF 130 (324)
T ss_dssp CCCSSSH-----HHHHHHHHHH-HHHHHCCSEEEEEEEGGGGSGGGHHHHHHHHHHH
T ss_pred ccccccc-----ccchHHHHHH-HHHhhCCceeeccccccccccccchhhHHHHhHH
Confidence 2211111 11222 3333 4556788644444444444445566777777654
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=89.86 E-value=0.13 Score=45.85 Aligned_cols=124 Identities=10% Similarity=-0.019 Sum_probs=69.0
Q ss_pred CCCeEeeecccCcchHHHHHHhcCCCcEEEEcCCchhh--HHhhccccccccCcceE---EEEEecceeeecccCCCCCc
Q psy7769 166 PYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPV--LALNIRPYDTVLDIHAL---KLVKVGGSVVYSTCSLSPIQ 240 (355)
Q Consensus 166 pG~~VLD~CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v---~~~~~Da~~lDaPCSgsG~t 240 (355)
.|.+|||++||.||.+..+-+.+- -.|.|+|+++..+ .+.|..... ..++..+ .+-..|...--+||.++-..
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~aG~-~~v~a~e~d~~a~~~~~~N~~~~~-~~Di~~~~~~~~~~~Dll~ggpPCq~fS~a 87 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESCGA-ECVYSNEWDKYAQEVYEMNFGEKP-EGDITQVNEKTIPDHDILCAGFPCQAFSIS 87 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTC-EEEEEECCCHHHHHHHHHHHSCCC-BSCGGGSCGGGSCCCSEEEEECCCTTTCTT
T ss_pred CCCeEEEECccccHHHHHHHHCCC-eEEEEEeCCHHHHHHHHHHCCCCC-cCchhcCchhhcceeeeeecccccchhhhh
Confidence 578999999999999988766542 3578899999998 777764110 0011111 11233445577999877644
Q ss_pred cCCc-cccchHHHHhhhhHH-HHHHHHHhhccCCcEEEEEeCCCCCCCCHHHHHHHHHhh
Q psy7769 241 NDGV-VHMSLKRIWEETGCE-IEIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRI 298 (355)
Q Consensus 241 ~~~~-l~~~~~~l~~l~~lQ-~lL~~A~~~LkpGG~lVYsTCSl~~~ENE~vV~~~L~~~ 298 (355)
+.+. .. .+ ...+- ++ -.+.+.++|-=.++=..-.+...++..+.+.+++..
T Consensus 88 g~~~g~~-d~-----r~~l~~~~-~~~i~~~kP~~~~lENV~~~~~~~~~~~~~~i~~~l 140 (327)
T d2c7pa1 88 GKQKGFE-DS-----RGTLFFDI-ARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTM 140 (327)
T ss_dssp SCCCGGG-ST-----TSCHHHHH-HHHHHHHCCSEEEEEEEGGGGTGGGGHHHHHHHHHH
T ss_pred hhhcCCc-cc-----chhHHHHH-HHHHhccCCcEEecccchhhhhhccchhhHHhhhHH
Confidence 4332 11 00 01111 22 234455677533333444454455666666555543
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.89 E-value=1.1 Score=38.72 Aligned_cols=109 Identities=10% Similarity=-0.037 Sum_probs=70.9
Q ss_pred CCeEeeecccCcchHHHHHHhc---CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee------------
Q psy7769 167 YDTVLDMCAAPGGKTLVALQTL---YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV------------ 229 (355)
Q Consensus 167 G~~VLD~CAgPGgKT~~la~~~---~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~------------ 229 (355)
|.+|-=++-|.+|....+|..+ +..+|+..+.+.+++ +.+.++ . .+ .++.++..|...
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~--~--~~-~~~~~~~~Dvs~~~sv~~~~~~~~ 76 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQ--A--EG-LSPRFHQLDIDDLQSIRALRDFLR 76 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHH--H--TT-CCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHH--h--cC-CcEEEEEEecCCHHHHHHHHHHHH
Confidence 6788777788888888877643 236899999999998 666665 2 12 345677777543
Q ss_pred -----eecccCCCCCccCCc-cccchHHHHhhh--hHH---HHHHHHHhhccCCcEEEEEeC
Q psy7769 230 -----VYSTCSLSPIQNDGV-VHMSLKRIWEET--GCE---IEIKHALKLVKVGGSVVYSTC 280 (355)
Q Consensus 230 -----lDaPCSgsG~t~~~~-l~~~~~~l~~l~--~lQ---~lL~~A~~~LkpGG~lVYsTC 280 (355)
+|.-...-|+..... .....+...... ++- .+.+.++.+++.+|++|..+.
T Consensus 77 ~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS 138 (275)
T d1wmaa1 77 KEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS 138 (275)
T ss_dssp HHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred HhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 777776667543333 222222222211 111 788889999999999988654
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=86.21 E-value=1.3 Score=35.41 Aligned_cols=41 Identities=17% Similarity=0.007 Sum_probs=30.5
Q ss_pred hCCCCCCeEeeecccC--cchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 162 LNIRPYDTVLDMCAAP--GGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 162 L~~~pG~~VLD~CAgP--GgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
.+++||++||=.++|. |...+++|...+ .+|++.+.++.++
T Consensus 24 ~~l~~g~~Vlv~ga~g~vG~~~iqlak~~G-a~Vi~~~~s~~k~ 66 (179)
T d1qora2 24 YEIKPDEQFLFHAAAGGVGLIACQWAKALG-AKLIGTVGTAQKA 66 (179)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHHHHHHHT-CEEEEEESSHHHH
T ss_pred hCCCCCCEEEEEccccccchHHHHHHHHhC-CeEeecccchHHH
Confidence 4689999998875554 334456666553 7999999999988
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.16 E-value=0.34 Score=39.04 Aligned_cols=43 Identities=9% Similarity=-0.150 Sum_probs=32.2
Q ss_pred HhhCCCCCCeEeeecccCcch-HHHHHHhcCCCcEEEEcCCchhh
Q psy7769 160 LALNIRPYDTVLDMCAAPGGK-TLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgPGgK-T~~la~~~~~g~V~AvD~s~~Rl 203 (355)
...+++||++||-+++|+-|. +.++|...+ .+|+++|.++.|+
T Consensus 21 ~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G-~~vi~~~~~~~k~ 64 (168)
T d1piwa2 21 VRNGCGPGKKVGIVGLGGIGSMGTLISKAMG-AETYVISRSSRKR 64 (168)
T ss_dssp HHTTCSTTCEEEEECCSHHHHHHHHHHHHHT-CEEEEEESSSTTH
T ss_pred HHhCcCCCCEEEEECCCCcchhHHHHhhhcc-ccccccccchhHH
Confidence 345789999999998875443 344555443 7899999999998
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=85.30 E-value=1.6 Score=34.66 Aligned_cols=43 Identities=9% Similarity=-0.122 Sum_probs=30.6
Q ss_pred HhhCCCCCCeEeeecccC-cchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 160 LALNIRPYDTVLDMCAAP-GGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 160 ~~L~~~pG~~VLD~CAgP-GgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
...+++||++||=.+||+ |..++++|... ..+++++|.+.+++
T Consensus 24 ~~~~~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~ 67 (168)
T d1uufa2 24 RHWQAGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKR 67 (168)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGH
T ss_pred HHhCCCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHH
Confidence 455799999999987654 22334455544 35788999999988
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.71 E-value=0.41 Score=42.19 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=31.7
Q ss_pred CeEeeecccCcchHHHHHHhcCCC-cEEEEcCCchhh--HHhhcc
Q psy7769 168 DTVLDMCAAPGGKTLVALQTLYPD-YYCMDGASLLPV--LALNIR 209 (355)
Q Consensus 168 ~~VLD~CAgPGgKT~~la~~~~~g-~V~AvD~s~~Rl--l~~~l~ 209 (355)
.+|+|++||.||.+..+-..+-.. .|.|+|+++..+ .+.|..
T Consensus 3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~ 47 (343)
T d1g55a_ 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP 47 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT
T ss_pred CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCC
Confidence 479999999999887765553222 378999999988 666653
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=82.31 E-value=4.1 Score=34.57 Aligned_cols=106 Identities=11% Similarity=-0.051 Sum_probs=62.1
Q ss_pred eEeeecccCcchHHHHHHhcC--CCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee---------------
Q psy7769 169 TVLDMCAAPGGKTLVALQTLY--PDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV--------------- 229 (355)
Q Consensus 169 ~VLD~CAgPGgKT~~la~~~~--~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~--------------- 229 (355)
+|.=+.-|.+|....+|..+. ..+|+.+|.++.++ +.+.++ . .+ .++..+..|...
T Consensus 11 KvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~--~--~g-~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 85 (251)
T d2c07a1 11 KVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIK--S--FG-YESSGYAGDVSKKEEISEVINKILTEH 85 (251)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHH--T--TT-CCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH--h--cC-CcEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 555566677888998887652 36899999999988 666666 3 22 246677777653
Q ss_pred --eecccCCCCCccCCcc-ccchHHHHhhhhHH-----HHHHHHHhhc--cCCcEEEEEe
Q psy7769 230 --VYSTCSLSPIQNDGVV-HMSLKRIWEETGCE-----IEIKHALKLV--KVGGSVVYST 279 (355)
Q Consensus 230 --lDaPCSgsG~t~~~~l-~~~~~~l~~l~~lQ-----~lL~~A~~~L--kpGG~lVYsT 279 (355)
+|.-....|+.....+ ..+.+...+....- .+.+.+++.+ +.+|+||..+
T Consensus 86 g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnis 145 (251)
T d2c07a1 86 KNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINIS 145 (251)
T ss_dssp SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred CCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEEC
Confidence 6655544553332222 22333333222211 4555555544 3468988854
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.20 E-value=3.2 Score=33.53 Aligned_cols=43 Identities=12% Similarity=-0.184 Sum_probs=29.0
Q ss_pred hhCCCCC--CeEeee--cccCcchHHHHHHhcCCCcEEEEcCCchhh
Q psy7769 161 ALNIRPY--DTVLDM--CAAPGGKTLVALQTLYPDYYCMDGASLLPV 203 (355)
Q Consensus 161 ~L~~~pG--~~VLD~--CAgPGgKT~~la~~~~~g~V~AvD~s~~Rl 203 (355)
..++++| +.||=. +.|-|..+.++|...+...|+++..+.++.
T Consensus 23 ~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~ 69 (187)
T d1vj1a2 23 KGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKC 69 (187)
T ss_dssp HSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHH
T ss_pred HhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHH
Confidence 3457777 778863 456677788888877544677777665554
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=80.69 E-value=6 Score=33.43 Aligned_cols=104 Identities=11% Similarity=0.043 Sum_probs=60.0
Q ss_pred eEeeecccCcchHHHHHHhc--CCCcEEEEcCCchhh--HHhhccccccccCcceEEEEEeccee---------------
Q psy7769 169 TVLDMCAAPGGKTLVALQTL--YPDYYCMDGASLLPV--LALNIRPYDTVLDIHALKLVKVGGSV--------------- 229 (355)
Q Consensus 169 ~VLD~CAgPGgKT~~la~~~--~~g~V~AvD~s~~Rl--l~~~l~r~~~~~g~~~v~~~~~Da~~--------------- 229 (355)
+|.=+.-|.+|....+|..+ ...+|+.+|.+.+++ +.+.+. . + .++.++..|...
T Consensus 7 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~--~---~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (251)
T d1zk4a1 7 KVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVG--T---P-DQIQFFQHDSSDEDGWTKLFDATEKAF 80 (251)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC--C---T-TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC--C---C-CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 34445556777888777654 347899999999888 555555 2 1 246777778653
Q ss_pred --eecccCCCCCccCCc-cccchHHHHhhhhHH-----HHHHHHHhhccC---CcEEEEE
Q psy7769 230 --VYSTCSLSPIQNDGV-VHMSLKRIWEETGCE-----IEIKHALKLVKV---GGSVVYS 278 (355)
Q Consensus 230 --lDaPCSgsG~t~~~~-l~~~~~~l~~l~~lQ-----~lL~~A~~~Lkp---GG~lVYs 278 (355)
+|.-....|+..... ...+.+......+.- .+.+.+++.++. ||+||..
T Consensus 81 G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~i 140 (251)
T d1zk4a1 81 GPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINM 140 (251)
T ss_dssp SSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEE
T ss_pred CCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEee
Confidence 565554455433333 223444333322211 566666666543 4676654
|