Psyllid ID: psy77

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-----
Protein Sequence
MLMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMILIIAVIHCQVQAYLSGLLDSE
Secondary Structure (PSIPRED)
cccHHHHHHHHHccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHccccEEEEEEccEEEEEEcccccccccHHEHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mlmiqhtdeVVKGSMVIAhykipryvefvadfpktvsGKIQKYVLSKQMEDKMILIIAVIHCQVQAYLSGLLDSE
Flexible Loop (DISEMBL)
mlmiqhtdevvkgsMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMILIIAVIHCQVQAYLSGLLDSE
Low Complexity Region (SEG)
MLMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMILIIAVIHCQVQAYLSGLLDSE
Disordered region (IsUnstruct)
*******DEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMILIIAVIHCQVQAYLSGL****
Disordered Region (DISOPRED)
MLMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMILIIAVIHCQVQAYLSGLLD**
Disordered Region (DISEMBL)
MLMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMILIIAVIHCQVQAYLSGLLDSE
Disordered Region (DISPRO)
MLMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMILIIAVIHCQVQAYLSGLL***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMILIIAVIHCQVQAYLSGLLDSE
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	75	2.2.26 [Sep-21-2011]
Q17QJ1	615	Acyl-CoA synthetase famil	yes	N/A	0.52	0.063	0.589	2e-07
Q499N5	615	Acyl-CoA synthetase famil	yes	N/A	0.52	0.063	0.589	3e-07
Q5R9G9	615	Acyl-CoA synthetase famil	yes	N/A	0.52	0.063	0.564	4e-07
Q8VCW8	615	Acyl-CoA synthetase famil	yes	N/A	0.52	0.063	0.564	5e-07
Q4R4Z9	618	Acyl-CoA synthetase famil	N/A	N/A	0.52	0.063	0.564	7e-07
Q96CM8	615	Acyl-CoA synthetase famil	yes	N/A	0.52	0.063	0.538	1e-06
Q0P4F7	606	Acyl-CoA synthetase famil	yes	N/A	0.52	0.064	0.538	2e-06
O31826	549	Putative acyl-CoA synthet	yes	N/A	0.426	0.058	0.625	0.0001
Q8GQN9	527	Benzoate--CoA ligase OS=T	N/A	N/A	0.4	0.056	0.566	0.0002
Q08AH1	577	Acyl-coenzyme A synthetas	no	N/A	0.506	0.065	0.5	0.0004

>sp|Q17QJ1|ACSF2_BOVIN Acyl-CoA synthetase family member 2, mitochondrial OS=Bos taurus GN=ACSF2 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/39 (58%), Positives = 31/39 (79%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMIL 55
           I+H+KIPRY+ FV ++P TVSGKIQK+ L +QME  + L
Sbjct: 577 ISHFKIPRYIVFVTNYPLTVSGKIQKFKLREQMEQHLNL 615

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.
Bos taurus (taxid: 9913)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|Q499N5|ACSF2_RAT Acyl-CoA synthetase family member 2, mitochondrial OS=Rattus norvegicus GN=Acsf2 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/39 (58%), Positives = 30/39 (76%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMIL 55
           I+H+KIPRY+ FV  +P TVSGKIQK+ L +QME  + L
Sbjct: 577 ISHFKIPRYIVFVEGYPLTVSGKIQKFKLREQMEQHLKL 615

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q5R9G9|ACSF2_PONAB Acyl-CoA synthetase family member 2, mitochondrial OS=Pongo abelii GN=ACSF2 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/39 (56%), Positives = 31/39 (79%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMIL 55
           I+H+KIPRY+ FV ++P T+SGKIQK+ L +QME  + L
Sbjct: 577 ISHFKIPRYIVFVTNYPLTISGKIQKFKLREQMERHLNL 615

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q8VCW8|ACSF2_MOUSE Acyl-CoA synthetase family member 2, mitochondrial OS=Mus musculus GN=Acsf2 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/39 (56%), Positives = 30/39 (76%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMIL 55
           I+H+KIPRY+ FV  +P T+SGKIQK+ L +QME  + L
Sbjct: 577 ISHFKIPRYIVFVEGYPLTISGKIQKFKLREQMEQHLKL 615

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q4R4Z9|ACSF2_MACFA Acyl-CoA synthetase family member 2, mitochondrial OS=Macaca fascicularis GN=ACSF2 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/39 (56%), Positives = 30/39 (76%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMIL 55
           I+H+KIPRY+ FV ++P T SGKIQK+ L +QME  + L
Sbjct: 580 ISHFKIPRYIVFVTNYPLTTSGKIQKFKLREQMERHLNL 618

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Macaca fascicularis (taxid: 9541)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q96CM8|ACSF2_HUMAN Acyl-CoA synthetase family member 2, mitochondrial OS=Homo sapiens GN=ACSF2 PE=1 SV=2

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/39 (53%), Positives = 31/39 (79%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMIL 55
           I+H+KIP+Y+ FV ++P T+SGKIQK+ L +QME  + L
Sbjct: 577 ISHFKIPKYIVFVTNYPLTISGKIQKFKLREQMERHLNL 615

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q0P4F7|ACSF2_DANRE Acyl-CoA synthetase family member 2, mitochondrial OS=Danio rerio GN=acsf2 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 31/39 (79%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMIL 55
           IAHYK+PRY+ FV D+P T++GKIQK+ L ++ E ++ L
Sbjct: 568 IAHYKVPRYILFVQDYPLTITGKIQKHKLRERTEKQLGL 606

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|O31826|YNGI_BACSU Putative acyl-CoA synthetase YngI OS=Bacillus subtilis (strain 168) GN=yngI PE=3 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 24/32 (75%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQ 48
           IA +KIPRYV F  D+P T SGKIQKY L ++
Sbjct: 507 IARHKIPRYVIFTDDYPMTASGKIQKYKLREK 538

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q8GQN9|BCLA_THAAR Benzoate--CoA ligase OS=Thauera aromatica GN=bclA PE=1 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 24/30 (80%)

Query: 16  VIAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
           ++A YK PR++EFV D PKT +GKIQ++ L
Sbjct: 495 LLAPYKYPRWIEFVDDLPKTATGKIQRFKL 524

Catalyzes the ligation of benzoate and CoA to form benzoyl-CoA at the expense of ATP. The enzyme also ligates 2-aminobenzoate and CoA. The enzyme shows activity toward a number of benzoate derivatives.

Thauera aromatica (taxid: 59405)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q08AH1|ACSM1_HUMAN Acyl-coenzyme A synthetase ACSM1, mitochondrial OS=Homo sapiens GN=ACSM1 PE=2 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/38 (50%), Positives = 27/38 (71%)

Query: 16  VIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM 53
           V A YK PR VEFV++ PKT++GKI++  L K+   +M
Sbjct: 540 VTAPYKYPRKVEFVSELPKTITGKIERKELRKKETGQM 577

Has medium-chain fatty acid:CoA ligase activity with broad substrate specificity (in vitro). Acts on acids from C(4) to C(11) and on the corresponding 3-hydroxy- and 2,3- or 3,4-unsaturated acids (in vitro). Functions as GTP-dependent lipoate-activating enzyme that generates the substrate for lipoyltransferase.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
307197304	549	Acyl-CoA synthetase family member 2, mit	0.6	0.081	0.617	2e-08
340728305	617	PREDICTED: acyl-CoA synthetase family me	0.6	0.072	0.595	4e-08
347540717	562	acyl-CoA synthetase [Pseudogulbenkiania	0.52	0.069	0.615	7e-08
224825723	562	AMP-dependent synthetase and ligase [Pse	0.52	0.069	0.615	7e-08
34497235	562	AMP-binding protein [Chromobacterium vio	0.52	0.069	0.641	2e-07
322778766	603	hypothetical protein SINV_03580 [Solenop	0.52	0.064	0.615	2e-07
91974734	564	AMP-binding domain-containing protein [R	0.56	0.074	0.595	2e-07
380011934	351	PREDICTED: acyl-CoA synthetase family me	0.52	0.111	0.666	3e-07
307172749	396	Acyl-CoA synthetase family member 2, mit	0.52	0.098	0.615	3e-07
392953725	575	AMP-dependent synthetase and ligase [Hyd	0.52	0.067	0.641	5e-07

>gi|307197304|gb|EFN78596.1| Acyl-CoA synthetase family member 2, mitochondrial [Harpegnathos saltator]

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/47 (61%), Positives = 36/47 (76%), Gaps = 2/47 (4%)

Query: 9   EVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMIL 55
           E  KG   IAH+KIPRYVEFV +FPKT SGK+QK+ L KQ+E K ++
Sbjct: 493 EYCKGK--IAHFKIPRYVEFVDEFPKTYSGKVQKFQLKKQLESKGVI 537

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340728305|ref|XP_003402466.1| PREDICTED: acyl-CoA synthetase family member 2, mitochondrial-like [Bombus terrestris]

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/47 (59%), Positives = 35/47 (74%), Gaps = 2/47 (4%)

Query: 9   EVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMIL 55
           E  KG M  AH+KIPRY+EFV ++ KT SGKIQKY L +QME K ++
Sbjct: 553 EYCKGRM--AHFKIPRYIEFVTEYSKTASGKIQKYKLKQQMESKRVI 597

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347540717|ref|YP_004848142.1| acyl-CoA synthetase [Pseudogulbenkiania sp. NH8B] gi|345643895|dbj|BAK77728.1| acyl-CoA synthetase [Pseudogulbenkiania sp. NH8B]

 Score = 61.2 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/39 (61%), Positives = 34/39 (87%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMIL 55
           IAHYKIPRY+EFV  FP T++GKIQK+++ +QM++K+ L
Sbjct: 518 IAHYKIPRYIEFVDSFPMTITGKIQKFMMRQQMKEKLGL 556

Source: Pseudogulbenkiania sp. NH8B

Species: Pseudogulbenkiania sp. NH8B

Genus: Pseudogulbenkiania

Family: Neisseriaceae

Order: Neisseriales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|224825723|ref|ZP_03698827.1| AMP-dependent synthetase and ligase [Pseudogulbenkiania ferrooxidans 2002] gi|224601947|gb|EEG08126.1| AMP-dependent synthetase and ligase [Pseudogulbenkiania ferrooxidans 2002]

 Score = 61.2 bits (147), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/39 (61%), Positives = 34/39 (87%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMIL 55
           IAHYKIPRY+EFV  FP T++GKIQK+++ +QM++K+ L
Sbjct: 518 IAHYKIPRYIEFVDSFPMTITGKIQKFMMRQQMKEKLGL 556

Source: Pseudogulbenkiania ferrooxidans 2002

Species: Pseudogulbenkiania ferrooxidans

Genus: Pseudogulbenkiania

Family: Neisseriaceae

Order: Neisseriales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|34497235|ref|NP_901450.1| AMP-binding protein [Chromobacterium violaceum ATCC 12472] gi|34103091|gb|AAQ59454.1| probable long chain fatty-acid CoA ligase [Chromobacterium violaceum ATCC 12472]

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/39 (64%), Positives = 32/39 (82%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMIL 55
           IAHYKIPRY+EFV  FP TV+GKIQKY++ + M +K+ L
Sbjct: 518 IAHYKIPRYIEFVDSFPMTVTGKIQKYLMRRTMVEKLGL 556

Source: Chromobacterium violaceum ATCC 12472

Species: Chromobacterium violaceum

Genus: Chromobacterium

Family: Neisseriaceae

Order: Neisseriales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|322778766|gb|EFZ09182.1| hypothetical protein SINV_03580 [Solenopsis invicta]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/39 (61%), Positives = 33/39 (84%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMIL 55
           IAH+KIPRYV+FV ++PKT +GKIQK+ L +QMED  ++
Sbjct: 558 IAHFKIPRYVKFVDEYPKTTTGKIQKFRLKEQMEDSGVI 596

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91974734|ref|YP_567393.1| AMP-binding domain-containing protein [Rhodopseudomonas palustris BisB5] gi|91681190|gb|ABE37492.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris BisB5]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/42 (59%), Positives = 35/42 (83%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMILIIA 58
           IAH KIPRY+EFV +FP TV+GKIQK+V+ +++E K+ L+ A
Sbjct: 520 IAHNKIPRYIEFVDEFPMTVTGKIQKFVMREKVESKLGLVAA 561

Source: Rhodopseudomonas palustris BisB5

Species: Rhodopseudomonas palustris

Genus: Rhodopseudomonas

Family: Bradyrhizobiaceae

Order: Rhizobiales

Class: Alphaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|380011934|ref|XP_003690047.1| PREDICTED: acyl-CoA synthetase family member 2, mitochondrial-like [Apis florea]

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/39 (66%), Positives = 33/39 (84%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMIL 55
           IA +KIPRYVEFV D+PKT SGKIQK++L ++ME K I+
Sbjct: 308 IAPFKIPRYVEFVTDYPKTSSGKIQKHILRQEMERKGII 346

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307172749|gb|EFN64035.1| Acyl-CoA synthetase family member 2, mitochondrial [Camponotus floridanus]

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/39 (61%), Positives = 32/39 (82%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMIL 55
           IAH+KIPRYV FV D+PKT SGKIQK+ L +Q+E+  ++
Sbjct: 355 IAHFKIPRYVHFVDDYPKTTSGKIQKFRLKEQLENSGVI 393

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|392953725|ref|ZP_10319279.1| AMP-dependent synthetase and ligase [Hydrocarboniphaga effusa AP103] gi|391859240|gb|EIT69769.1| AMP-dependent synthetase and ligase [Hydrocarboniphaga effusa AP103]

 Score = 58.5 bits (140), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/39 (64%), Positives = 31/39 (79%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMIL 55
           IAHYKIPRYV FV +FP TV+GKIQK+ L + M D++ L
Sbjct: 527 IAHYKIPRYVVFVDEFPMTVTGKIQKFALRQAMSDRLGL 565

Source: Hydrocarboniphaga effusa AP103

Species: Hydrocarboniphaga effusa

Genus: Hydrocarboniphaga

Family: Sinobacteraceae

Order: Xanthomonadales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
UNIPROTKB|F1RT96	609	ACSF2 "Uncharacterized protein	0.52	0.064	0.589	1.3e-07
UNIPROTKB|F1PTR3	612	ACSF2 "Uncharacterized protein	0.653	0.080	0.529	1.3e-07
UNIPROTKB|E1BS15	589	ACSF2 "Uncharacterized protein	0.52	0.066	0.615	6.7e-07
UNIPROTKB|G1K208	614	ACSF2 "Acyl-CoA synthetase fam	0.52	0.063	0.589	7.1e-07
UNIPROTKB|Q17QJ1	615	ACSF2 "Acyl-CoA synthetase fam	0.52	0.063	0.589	7.1e-07
RGD|1562656	615	Acsf2 "acyl-CoA synthetase fam	0.653	0.079	0.509	9.2e-07
MGI|MGI:2388287	615	Acsf2 "acyl-CoA synthetase fam	0.52	0.063	0.564	1.9e-06
UNIPROTKB|B4DUF5	455	ACSF2 "Acyl-CoA synthetase fam	0.453	0.074	0.588	2e-06
UNIPROTKB|E9PF16	572	ACSF2 "Acyl-CoA synthetase fam	0.453	0.059	0.588	2.9e-06
UNIPROTKB|B4DHT5	602	ACSF2 "cDNA FLJ54351, weakly s	0.453	0.056	0.588	3.1e-06

UNIPROTKB|F1RT96 ACSF2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 131 (51.2 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 23/39 (58%), Positives = 32/39 (82%)

Query:    17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMIL 55
             I+H+KIPRY+ FV D+P TVSGK+QK+ L +QME ++ L
Sbjct:   571 ISHFKIPRYIVFVTDYPLTVSGKVQKFKLREQMEQRLNL 609

GO:0005739 "mitochondrion" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|F1PTR3 ACSF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 131 (51.2 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 27/51 (52%), Positives = 36/51 (70%)

Query:     7 TDEVVKGSMV--IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMIL 55
             T+E +K      I+H+KIPRY+ FV D+P TVSGKIQK+ L +QME  + L
Sbjct:   559 TEEEIKAFCKGKISHFKIPRYIVFVTDYPLTVSGKIQKFKLREQMEQHLNL 609

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|E1BS15 ACSF2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 124 (48.7 bits), Expect = 6.7e-07, P = 6.7e-07
 Identities = 24/39 (61%), Positives = 30/39 (76%)

Query:    17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMIL 55
             I+H+KIPRYV FV  +P TVSGK+QKY L +QME  + L
Sbjct:   551 ISHFKIPRYVVFVNQYPLTVSGKVQKYKLREQMEKHLQL 589

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|G1K208 ACSF2 "Acyl-CoA synthetase family member 2, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 124 (48.7 bits), Expect = 7.1e-07, P = 7.1e-07
 Identities = 23/39 (58%), Positives = 31/39 (79%)

Query:    17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMIL 55
             I+H+KIPRY+ FV ++P TVSGKIQK+ L +QME  + L
Sbjct:   576 ISHFKIPRYIVFVTNYPLTVSGKIQKFKLREQMEQHLNL 614

GO:0005739 "mitochondrion" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|Q17QJ1 ACSF2 "Acyl-CoA synthetase family member 2, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 124 (48.7 bits), Expect = 7.1e-07, P = 7.1e-07
 Identities = 23/39 (58%), Positives = 31/39 (79%)

Query:    17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMIL 55
             I+H+KIPRY+ FV ++P TVSGKIQK+ L +QME  + L
Sbjct:   577 ISHFKIPRYIVFVTNYPLTVSGKIQKFKLREQMEQHLNL 615

GO:0005739 "mitochondrion" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

RGD|1562656 Acsf2 "acyl-CoA synthetase family member 2" [Rattus norvegicus (taxid:10116)]

 Score = 123 (48.4 bits), Expect = 9.2e-07, P = 9.2e-07
 Identities = 26/51 (50%), Positives = 35/51 (68%)

Query:     7 TDEVVKGSMV--IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMIL 55
             T+E +K      I+H+KIPRY+ FV  +P TVSGKIQK+ L +QME  + L
Sbjct:   565 TEEEIKAFCKGKISHFKIPRYIVFVEGYPLTVSGKIQKFKLREQMEQHLKL 615

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

MGI|MGI:2388287 Acsf2 "acyl-CoA synthetase family member 2" [Mus musculus (taxid:10090)]

 Score = 120 (47.3 bits), Expect = 1.9e-06, P = 1.9e-06
 Identities = 22/39 (56%), Positives = 30/39 (76%)

Query:    17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMIL 55
             I+H+KIPRY+ FV  +P T+SGKIQK+ L +QME  + L
Sbjct:   577 ISHFKIPRYIVFVEGYPLTISGKIQKFKLREQMEQHLKL 615

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0003824 "catalytic activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

UNIPROTKB|B4DUF5 ACSF2 "Acyl-CoA synthetase family member 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 118 (46.6 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 20/34 (58%), Positives = 29/34 (85%)

Query:    17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME 50
             I+H+KIP+Y+ FV ++P T+SGKIQK+ L +QME
Sbjct:   417 ISHFKIPKYIVFVTNYPLTISGKIQKFKLREQME 450

GO:0016874 "ligase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E9PF16 ACSF2 "Acyl-CoA synthetase family member 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 118 (46.6 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 20/34 (58%), Positives = 29/34 (85%)

Query:    17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME 50
             I+H+KIP+Y+ FV ++P T+SGKIQK+ L +QME
Sbjct:   534 ISHFKIPKYIVFVTNYPLTISGKIQKFKLREQME 567

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|B4DHT5 ACSF2 "cDNA FLJ54351, weakly similar to Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)" [Homo sapiens (taxid:9606)]

 Score = 118 (46.6 bits), Expect = 3.1e-06, P = 3.1e-06
 Identities = 20/34 (58%), Positives = 29/34 (85%)

Query:    17 IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME 50
             I+H+KIP+Y+ FV ++P T+SGKIQK+ L +QME
Sbjct:   564 ISHFKIPKYIVFVTNYPLTISGKIQKFKLREQME 597

GO:0016874 "ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0P4F7	ACSF2_DANRE	6, ., 2, ., 1, ., -	0.5384	0.52	0.0643	yes	N/A
O31826	YNGI_BACSU	6, ., 2, ., 1, ., -	0.625	0.4266	0.0582	yes	N/A
Q96CM8	ACSF2_HUMAN	6, ., 2, ., 1, ., -	0.5384	0.52	0.0634	yes	N/A
Q8VCW8	ACSF2_MOUSE	6, ., 2, ., 1, ., -	0.5641	0.52	0.0634	yes	N/A
Q17QJ1	ACSF2_BOVIN	6, ., 2, ., 1, ., -	0.5897	0.52	0.0634	yes	N/A
Q499N5	ACSF2_RAT	6, ., 2, ., 1, ., -	0.5897	0.52	0.0634	yes	N/A
Q5R9G9	ACSF2_PONAB	6, ., 2, ., 1, ., -	0.5641	0.52	0.0634	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	75
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	2e-15
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	8e-12
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	2e-11
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	7e-11
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	2e-09
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	3e-09
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	5e-09
pfam13193	43	pfam13193, DUF4009, Domain of unknown function (DU	6e-09
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	8e-09
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	9e-09
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	1e-08
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	3e-08
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	4e-08
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	7e-08
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	1e-07
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	2e-07
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	2e-07
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	4e-07
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	7e-07
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	9e-07
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	1e-06
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	2e-06
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	3e-06
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	3e-06
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	3e-06
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	4e-06
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	5e-06
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	6e-06
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	1e-05
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	1e-05
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	1e-05
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	3e-05
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	4e-05
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	4e-05
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	6e-05
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	7e-05
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	8e-05
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	1e-04
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	1e-04
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	1e-04
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	1e-04
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	2e-04
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	2e-04
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	3e-04
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	3e-04
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	3e-04
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	8e-04
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	8e-04
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	8e-04
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	0.001
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	0.002
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	0.002
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	0.003
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	0.003
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	0.003
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	0.004
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	0.004
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	0.004

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score = 68.7 bits (169), Expect = 2e-15
 Identities = 21/37 (56%), Positives = 30/37 (81%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM 53
           IAHYKIPRY+ FV +FP TV+GKIQK+ + + M +++
Sbjct: 517 IAHYKIPRYIRFVDEFPMTVTGKIQKFKMREMMIEEL 553

Length = 559

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 57.9 bits (141), Expect = 8e-12
 Identities = 17/29 (58%), Positives = 23/29 (79%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
           +A +K+PRYV FV + P+T SGKIQK+ L
Sbjct: 318 LARFKVPRYVRFVDELPRTASGKIQKFKL 346

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score = 56.7 bits (137), Expect = 2e-11
 Identities = 17/29 (58%), Positives = 24/29 (82%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
           IAH+K+PRY  FV +FP TV+GK+QK+ +
Sbjct: 518 IAHFKVPRYFRFVDEFPMTVTGKVQKFRM 546

Length = 558

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 55.3 bits (134), Expect = 7e-11
 Identities = 14/28 (50%), Positives = 20/28 (71%)

Query: 18  AHYKIPRYVEFVADFPKTVSGKIQKYVL 45
            ++ +PRY+EFV + PKT + KIQK  L
Sbjct: 393 PYFMVPRYIEFVDELPKTPTEKIQKAEL 420

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score = 51.6 bits (124), Expect = 2e-09
 Identities = 16/29 (55%), Positives = 23/29 (79%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
           +A YK PR++EFV + PKT +GKIQ++ L
Sbjct: 477 LAPYKYPRWIEFVDELPKTATGKIQRFKL 505

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 50.9 bits (122), Expect = 3e-09
 Identities = 19/32 (59%), Positives = 27/32 (84%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQ 48
           +A++ +PRYVEFVA  PKT +GK+QK+VL +Q
Sbjct: 490 LAYFAVPRYVEFVAALPKTENGKVQKFVLREQ 521

Length = 542

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score = 50.0 bits (120), Expect = 5e-09
 Identities = 18/29 (62%), Positives = 25/29 (86%), Gaps = 1/29 (3%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
           +AH+K+P+ VEFV + PKT +GKIQK+VL
Sbjct: 491 LAHFKVPKTVEFV-ELPKTATGKIQKFVL 518

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|221971 pfam13193, DUF4009, Domain of unknown function (DUF4009)

 Score = 46.3 bits (111), Expect = 6e-09
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 20 YKIPRYVEFVADFPKTVSGKIQKYVLSKQME 50
          Y +PR VEFV + PKT SGKI + +L     
Sbjct: 1  YAVPREVEFVDELPKTRSGKILRRLLRAIAL 31

This is a small domain that is found C terminal to pfam00501. It has a central beta sheet core that is flanked by alpha helices. Length = 43

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 49.8 bits (119), Expect = 8e-09
 Identities = 17/33 (51%), Positives = 23/33 (69%)

Query: 16  VIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQ 48
           V A YK PR VEFV + PKT++GKI++  L  +
Sbjct: 496 VTAPYKYPRKVEFVQELPKTITGKIKRNELRDK 528

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 49.4 bits (118), Expect = 9e-09
 Identities = 16/42 (38%), Positives = 25/42 (59%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMILIIA 58
           +A YK+PR V FV + P+T SGKI +  L ++   +  L + 
Sbjct: 493 LALYKVPRIVVFVDELPRTASGKIDRRALREEYRAEPRLDLK 534

Length = 534

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score = 49.0 bits (118), Expect = 1e-08
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
           +A YK+P+ VEFV + P+  SGKI K  L
Sbjct: 313 LAGYKVPKSVEFVDELPRNASGKILKREL 341

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 47.9 bits (114), Expect = 3e-08
 Identities = 16/29 (55%), Positives = 22/29 (75%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
           +A YK PR++ FV D PKT +GKIQ++ L
Sbjct: 477 LAPYKYPRWIVFVDDLPKTATGKIQRFKL 505

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 47.4 bits (113), Expect = 4e-08
 Identities = 15/25 (60%), Positives = 19/25 (76%)

Query: 23  PRYVEFVADFPKTVSGKIQKYVLSK 47
           PR VEFV   PKT SGKIQ+++L +
Sbjct: 416 PREVEFVPALPKTPSGKIQRFLLRQ 440

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 47.0 bits (112), Expect = 7e-08
 Identities = 17/30 (56%), Positives = 21/30 (70%)

Query: 16  VIAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
             A YK PR +EFV + PKTVSGKI++  L
Sbjct: 399 RTAPYKYPREIEFVEELPKTVSGKIRRVEL 428

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score = 45.9 bits (110), Expect = 1e-07
 Identities = 14/37 (37%), Positives = 23/37 (62%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM 53
           +A +K+P+ + FV + P+T  GKI K VL +Q  +  
Sbjct: 485 LAKFKLPKRIAFVDELPRTSVGKILKRVLREQYAEGK 521

Length = 521

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 45.7 bits (109), Expect = 2e-07
 Identities = 16/35 (45%), Positives = 25/35 (71%), Gaps = 1/35 (2%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51
           +A +K+P+ V F  + PKT +GKIQK+VL +Q + 
Sbjct: 506 LAGFKVPKAVVF-GELPKTSTGKIQKFVLREQAKS 539

Length = 545

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score = 45.6 bits (109), Expect = 2e-07
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
           +A YK+PR VEF  + PK+  GKI +  L
Sbjct: 439 LAAYKVPRQVEFRDELPKSAVGKILRREL 467

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 44.7 bits (106), Expect = 4e-07
 Identities = 16/27 (59%), Positives = 21/27 (77%)

Query: 16  VIAHYKIPRYVEFVADFPKTVSGKIQK 42
           V A YK PR +EFV + PKT+SGKI++
Sbjct: 504 VTAPYKYPRIIEFVDELPKTISGKIRR 530

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 44.3 bits (105), Expect = 7e-07
 Identities = 16/32 (50%), Positives = 22/32 (68%)

Query: 16  VIAHYKIPRYVEFVADFPKTVSGKIQKYVLSK 47
            +A YK  R +EFV + PKT+SGKI++  L K
Sbjct: 400 RLAPYKRIRRIEFVGELPKTISGKIRRVELRK 431

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 43.9 bits (104), Expect = 9e-07
 Identities = 13/29 (44%), Positives = 21/29 (72%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
           +A YK PR +EF+   P+T +GK+Q++ L
Sbjct: 407 LAPYKCPRQIEFLDTLPRTATGKLQRFRL 435

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score = 43.7 bits (104), Expect = 1e-06
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 18  AHYKIPRYVEFVADFPKTVSGKIQKYVLSKQ 48
           A YK+PR +EF+ + PK  +GK+ K  L ++
Sbjct: 483 AKYKVPRSIEFLDELPKNATGKVLKRALREK 513

Length = 513

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score = 42.6 bits (101), Expect = 2e-06
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
           +A  K P  +E V   P+T SGK+QK+ L
Sbjct: 407 LAKQKWPERLEVVDALPRTPSGKVQKFEL 435

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score = 42.6 bits (101), Expect = 3e-06
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51
           +A +K+P+ V FV + P+  SGKI K  L ++   
Sbjct: 485 LAGFKVPKRVIFVDELPRNPSGKILKRELRERYAG 519

Length = 523

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 42.5 bits (100), Expect = 3e-06
 Identities = 17/30 (56%), Positives = 21/30 (70%)

Query: 16  VIAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
           VIA YK PR + FV   PKT +GKIQ++ L
Sbjct: 457 VIAPYKYPREINFVDALPKTQTGKIQRFRL 486

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score = 42.3 bits (100), Expect = 3e-06
 Identities = 15/26 (57%), Positives = 19/26 (73%)

Query: 16  VIAHYKIPRYVEFVADFPKTVSGKIQ 41
            +A YK+PR +EFV + PKT SGKI 
Sbjct: 313 RLAPYKVPRVIEFVDELPKTASGKID 338

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 42.1 bits (99), Expect = 4e-06
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQM 49
           +A YK+P+++  V   P+T SGK+QK  L   +
Sbjct: 451 LAKYKVPKHLRLVDALPRTASGKLQKARLRDAL 483

Length = 488

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score = 41.9 bits (99), Expect = 5e-06
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 16  VIAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
            +A YK PR +EFV + PKT SGK+   +L
Sbjct: 401 RMAAYKYPRIIEFVDELPKTASGKVLWRLL 430

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 41.5 bits (98), Expect = 6e-06
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
           I  + IPR + FV + PKT SGKIQ+ +L
Sbjct: 488 IGPHAIPRKIRFVDELPKTASGKIQRRLL 516

Length = 528

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 40.8 bits (96), Expect = 1e-05
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLS 46
           +A +K+P Y+E   D P+  SGKI K  L 
Sbjct: 488 MAKFKVPSYLEIRKDLPRNCSGKIIKKNLK 517

Length = 517

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 40.8 bits (95), Expect = 1e-05
 Identities = 17/29 (58%), Positives = 22/29 (75%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
           IAHYK PR VEFV + P+T +GK+ K +L
Sbjct: 472 IAHYKAPRSVEFVDELPRTPTGKLVKGLL 500

Length = 501

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score = 40.7 bits (96), Expect = 1e-05
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 18  AHYKIPRYVEFVADFPKTVSGKIQKYVLSK 47
           A +K+P+ + FV   PK  +GKIQ+  L++
Sbjct: 316 AAFKVPKKILFVDALPKGATGKIQRRKLAE 345

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 39.5 bits (93), Expect = 3e-05
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
           +AHYK PR ++F  + P+T +GK+ K  L
Sbjct: 462 LAHYKCPRSIDFEDELPRTPTGKLYKRRL 490

Length = 502

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 39.2 bits (92), Expect = 4e-05
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 12  KGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQ 48
           +  M  A YK PR VEFV   PK+ SGKI    L +Q
Sbjct: 505 REHM--AAYKYPRIVEFVDSLPKSGSGKILWRQLQEQ 539

Length = 546

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score = 39.1 bits (92), Expect = 4e-05
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51
           +A +K P+ V FV + P+   GK+QK +L +Q  D
Sbjct: 467 LARFKQPKRVFFVDELPRNTMGKVQKNLLREQYAD 501

Length = 504

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 38.5 bits (90), Expect = 6e-05
 Identities = 12/31 (38%), Positives = 21/31 (67%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSK 47
           +A ++ PR +EFV + P T +GKI++  L +
Sbjct: 409 LAAHEYPREIEFVDELPMTTTGKIRRRELRR 439

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 38.4 bits (89), Expect = 7e-05
 Identities = 16/37 (43%), Positives = 24/37 (64%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM 53
           +AHYK  R V+FV   PK++SGKI + +L ++M    
Sbjct: 507 VAHYKKVRVVQFVDSIPKSLSGKIMRRLLKEKMLSIN 543

Length = 546

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 38.4 bits (90), Expect = 8e-05
 Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 7/46 (15%)

Query: 7   TDEVVKGSMVIAH-------YKIPRYVEFVADFPKTVSGKIQKYVL 45
             E +    ++ H       Y +P  + FV   PK  +GK+ +  L
Sbjct: 304 DGESLDEKELLKHCRKHLPNYMVPAEIVFVDSLPKNANGKVDRSAL 349

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 22/65 (33%)

Query: 5   QHTDEVVKGSMV-----------IAH-------YKIPRYVEFVADFPKTVSGKIQKYVLS 46
           +H+ E VK  +V            A        YK P++VEF  + PKT  GKI    L 
Sbjct: 494 EHSGEAVKLFVVKKDPALTEEDVKAFCKERLTNYKRPKFVEFRTELPKTNVGKI----LR 549

Query: 47  KQMED 51
           +++ D
Sbjct: 550 RELRD 554

Length = 557

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM 53
           ++ +KIP+   FV + P T SGKI +      +E++ 
Sbjct: 447 LSSFKIPKEWHFVDEIPYTNSGKIARMEAKSWIENQE 483

Length = 487

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 37.8 bits (88), Expect = 1e-04
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQM 49
           +A +K+P  +EFV   P T  GKI K  L +++
Sbjct: 504 LAAFKLPDRIEFVDSLPLTAVGKIDKKALRRRL 536

Length = 542

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score = 37.6 bits (88), Expect = 1e-04
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQK 42
           +A +K+P  +E V   P T  GK+ K
Sbjct: 455 LAKFKLPDRLEVVDSLPLTPVGKVDK 480

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score = 37.4 bits (87), Expect = 2e-04
 Identities = 14/37 (37%), Positives = 24/37 (64%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM 53
           +A YK P ++  +   P+T SGKIQK++L K +  ++
Sbjct: 502 VAKYKYPEHIVVIDKLPRTASGKIQKFLLRKDIMRRL 538

Length = 547

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)

Query: 17  IAHYKIPRYVEFVADFPKTVSG---KIQKYVLSKQMEDKMI 54
           +A +K+P  V+ V  FP T S    KIQK+ L ++M    +
Sbjct: 495 LAGFKVPARVQVVEAFPVTESANGAKIQKHRL-REMAQARL 534

Length = 540

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score = 36.8 bits (85), Expect = 3e-04
 Identities = 15/36 (41%), Positives = 24/36 (66%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK 52
           +A YKIP+ + F+ + PK  +GKIQK  L  Q++ +
Sbjct: 461 LAKYKIPKEIVFLKELPKNATGKIQKAQLVNQLKSR 496

Length = 496

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 36.9 bits (86), Expect = 3e-04
 Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM 53
           +A YK+P+   FV + P+  SGK+ ++ L KQ+ ++M
Sbjct: 448 LAKYKVPKRFYFVEELPRNASGKLLRHEL-KQLVEEM 483

Length = 483

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 36.7 bits (85), Expect = 3e-04
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
           +A YK+P  VEFV   P T  GK+ K  L
Sbjct: 497 LAEYKLPDRVEFVDSLPLTAVGKVDKKAL 525

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 35.4 bits (82), Expect = 8e-04
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMI 54
           IA +K+P  VE V   P T  GK+ K  L + +  +  
Sbjct: 498 IAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRAS 535

Length = 536

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 35.4 bits (82), Expect = 8e-04
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
           ++  K PR ++F  + P+  +GK+ K +L
Sbjct: 475 LSRQKCPRSIDFEDELPRLPTGKLYKRLL 503

Length = 511

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 35.4 bits (82), Expect = 8e-04
 Identities = 12/26 (46%), Positives = 20/26 (76%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQK 42
           +A YK+P+++E +A+ P+  SGKI K
Sbjct: 469 LAGYKVPKHIEIMAELPREDSGKIFK 494

Length = 509

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score = 34.6 bits (80), Expect = 0.001
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 20  YKIPRYVEFVADFPKTVSGKIQKYVL 45
           YK+P+ VEF  + PK+  GKI +  L
Sbjct: 524 YKVPKLVEFRDELPKSNVGKILRREL 549

Length = 560

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 34.6 bits (80), Expect = 0.002
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 25  YVEFVADFPKTVSGKIQKYVLSKQMED 51
           +V  V   PKT SGKIQ+Y L++Q  +
Sbjct: 470 HVIPVRSIPKTTSGKIQRYKLAQQFLN 496

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 34.3 bits (79), Expect = 0.002
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 22  IPRYVEFVADFPKTVSGKIQKYVLSKQM 49
           IP  +      P+T SGKIQK+ L + +
Sbjct: 515 IPERLVVRDALPRTPSGKIQKFRLREML 542

Length = 547

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 34.3 bits (79), Expect = 0.003
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 23  PRYVEFVADFPKTVSGKIQKYVLSKQ 48
           P YV   A+ P+T + K+ K  LS +
Sbjct: 479 PSYVRVCAELPRTATFKVLKRQLSAE 504

Length = 529

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 34.1 bits (79), Expect = 0.003
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 23  PRYVEFVADFPKTVSGKIQKYVLSKQMEDKMIL 55
           P  + FV   PKT SGKI + +L K    +  L
Sbjct: 562 PDEIIFVPGLPKTRSGKIMRRILRKIAAGEEEL 594

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 34.0 bits (78), Expect = 0.003
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51
           IA + +P  V FV   P T +GKI K  L +Q +D
Sbjct: 500 IAKWWMPDDVAFVDAIPHTATGKILKTALREQFKD 534

Length = 542

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 33.7 bits (77), Expect = 0.004
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)

Query: 19  HYKIPRYVEFVADFPKTVSGKIQKYVL 45
            Y +P+ V F    PKT +GKIQK+VL
Sbjct: 527 AYWVPKSVVF-GPLPKTATGKIQKHVL 552

Length = 567

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 33.7 bits (78), Expect = 0.004
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 18  AHYKIPRYVEFVADFPKTVSGKIQKYVL 45
           A YK+PR V F+ + P+  +GK+ K  L
Sbjct: 518 ARYKVPRDVVFLDELPRNPTGKVLKREL 545

Length = 549

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 33.5 bits (77), Expect = 0.004
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 23  PRYVEFVADFPKTVSGKIQKYVLSKQ 48
           PRYV   AD P T + K+ K  L  Q
Sbjct: 478 PRYVRIAADLPSTATNKVLKRELIAQ 503

Length = 540

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	75
KOG1176|consensus	537		99.05
KOG1177|consensus	596		98.94
PRK09188	365	serine/threonine protein kinase; Provisional	98.76
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	98.75
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	98.71
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	98.7
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	98.69
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	98.64
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	98.64
PRK12316	5163	peptide synthase; Provisional	98.62
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	98.61
PRK05691	4334	peptide synthase; Validated	98.6
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	98.6
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	98.59
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	98.59
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	98.59
PRK07788	549	acyl-CoA synthetase; Validated	98.59
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	98.58
PLN03102	579	acyl-activating enzyme; Provisional	98.58
PTZ00237	647	acetyl-CoA synthetase; Provisional	98.58
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	98.57
PRK12467	3956	peptide synthase; Provisional	98.55
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	98.55
PRK07470	528	acyl-CoA synthetase; Validated	98.54
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	98.53
PLN02654	666	acetate-CoA ligase	98.53
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	98.53
PLN02574	560	4-coumarate--CoA ligase-like	98.52
PLN03051	499	acyl-activating enzyme; Provisional	98.52
PLN02246	537	4-coumarate--CoA ligase	98.5
PRK05852	534	acyl-CoA synthetase; Validated	98.49
PRK07638	487	acyl-CoA synthetase; Validated	98.49
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	98.49
PLN02860	563	o-succinylbenzoate-CoA ligase	98.48
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	98.48
PRK04319	570	acetyl-CoA synthetase; Provisional	98.48
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	98.47
PRK06060	705	acyl-CoA synthetase; Validated	98.47
PRK06018	542	putative acyl-CoA synthetase; Provisional	98.47
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	98.47
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	98.47
PRK06839	496	acyl-CoA synthetase; Validated	98.47
PRK12467	3956	peptide synthase; Provisional	98.46
PRK12316	5163	peptide synthase; Provisional	98.45
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	98.45
PRK06145	497	acyl-CoA synthetase; Validated	98.44
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	98.44
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	98.44
PRK00174	637	acetyl-CoA synthetase; Provisional	98.44
PRK07529	632	AMP-binding domain protein; Validated	98.43
PRK05691	4334	peptide synthase; Validated	98.43
PRK12583	558	acyl-CoA synthetase; Provisional	98.42
PRK07798	533	acyl-CoA synthetase; Validated	98.42
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	98.42
PRK09088	488	acyl-CoA synthetase; Validated	98.42
PRK08315	559	AMP-binding domain protein; Validated	98.41
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	98.4
PRK13390	501	acyl-CoA synthetase; Provisional	98.37
PRK07868	994	acyl-CoA synthetase; Validated	98.37
PLN03052	728	acetate--CoA ligase; Provisional	98.36
KOG1175|consensus	626		98.35
PRK07514	504	malonyl-CoA synthase; Validated	98.35
PRK08316	523	acyl-CoA synthetase; Validated	98.34
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	98.34
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.34
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	98.34
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	98.33
PLN02330	546	4-coumarate--CoA ligase-like 1	98.33
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	98.33
PRK13382	537	acyl-CoA synthetase; Provisional	98.33
PRK07867	529	acyl-CoA synthetase; Validated	98.32
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	98.32
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	98.32
PRK13391	511	acyl-CoA synthetase; Provisional	98.3
PRK06164	540	acyl-CoA synthetase; Validated	98.3
PRK06178	567	acyl-CoA synthetase; Validated	98.3
PRK05857	540	acyl-CoA synthetase; Validated	98.29
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	98.29
PRK07787	471	acyl-CoA synthetase; Validated	98.29
PRK08308	414	acyl-CoA synthetase; Validated	98.29
PRK06188	524	acyl-CoA synthetase; Validated	98.28
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.28
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	98.28
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	98.28
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	98.27
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	98.27
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	98.26
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	98.26
PRK10946	536	entE enterobactin synthase subunit E; Provisional	98.26
PRK13388	540	acyl-CoA synthetase; Provisional	98.24
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	98.24
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	98.21
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	98.14
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	98.14
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	98.14
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	98.13
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	98.12
PRK08162	545	acyl-CoA synthetase; Validated	98.08
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	98.04
PRK13383	516	acyl-CoA synthetase; Provisional	98.03
PLN02479	567	acetate-CoA ligase	97.97
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	97.95
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	97.91
PRK09274	552	peptide synthase; Provisional	97.85
KOG1178|consensus	1032		97.62
PRK09192	579	acyl-CoA synthetase; Validated	97.49
PLN02736	651	long-chain acyl-CoA synthetase	97.32
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	97.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	96.76
PRK05850	578	acyl-CoA synthetase; Validated	96.51
PRK12582	624	acyl-CoA synthetase; Provisional	95.32
KOG1179|consensus	649		95.01
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	91.09
PLN02861	660	long-chain-fatty-acid-CoA ligase	90.58
PLN02430	660	long-chain-fatty-acid-CoA ligase	89.37
PTZ00216	700	acyl-CoA synthetase; Provisional	89.15
PLN02614	666	long-chain acyl-CoA synthetase	87.99

>KOG1176|consensus

Probab=99.05  E-value=3.3e-10  Score=80.42  Aligned_cols=48  Identities=33%  Similarity=0.473  Sum_probs=45.7

Q ss_pred             CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      +++++|.+||+++  +++|+.|+.+.|++++|+|++|||.|+.+++.+..
T Consensus       485 lte~di~~~v~k~--l~~y~~~~~V~Fvd~lPKs~~GKi~R~~lr~~~~~  532 (537)
T KOG1176|consen  485 LTEKDIIEYVRKK--LPAYKLPGGVVFVDELPKTPNGKILRRKLRDIAKK  532 (537)
T ss_pred             CCHHHHHHHHHhh--CChhhccCeEEEeccCCCCCcchHHHHHHHHHHHh
Confidence            6889999999999  99999999999999999999999999999998765

>KOG1177|consensus

Probab=98.94  E-value=1.6e-09  Score=76.22  Aligned_cols=50  Identities=36%  Similarity=0.717  Sum_probs=46.5

Q ss_pred             CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHH
Q psy77             2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM   53 (75)
Q Consensus         2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~   53 (75)
                      ++.++|+++|+.+  +++|++|+++.+++++|+|.+|||.|.+++++....+
T Consensus       540 ~t~E~lKa~Ck~k--laHFKiPky~vf~~~FPlT~tGKIqKFeir~~~k~~l  589 (596)
T KOG1177|consen  540 TTAETLKAMCKGK--LAHFKIPKYFVFVDEFPLTTTGKIQKFEIREMSKGHL  589 (596)
T ss_pred             ccHHHHHHHHhcc--cccccCCcEEEEeccCcccccccchhHHHHHHHHhhc
Confidence            4789999999999  9999999999999999999999999999999887543

>PRK09188 serine/threonine protein kinase; Provisional

Probab=98.76  E-value=1.7e-08  Score=68.94  Aligned_cols=46  Identities=17%  Similarity=0.234  Sum_probs=42.6

Q ss_pred             CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77             2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME   50 (75)
Q Consensus         2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~   50 (75)
                      ++.+++.+||+++  |++ ++|+.+.+++++|+|++||++|+.++..+.
T Consensus       282 ~~~~el~~~l~~~--L~~-kvP~~v~~v~~lP~t~~GKi~R~~Lr~~~~  327 (365)
T PRK09188        282 ADEKSLRARLAGA--KPP-KPPEHIQPVAALPRDADGTVRDDILRLIAM  327 (365)
T ss_pred             CCHHHHHHHHHhh--chh-cCCcEEEEECCCCCCCCCCccHHHHHHHhh
Confidence            4678999999999  999 999999999999999999999999998753

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=98.75  E-value=2.3e-08  Score=68.87  Aligned_cols=50  Identities=18%  Similarity=0.337  Sum_probs=45.5

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMI   54 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~~   54 (75)
                      +.+++.++++++  +++|++|+.+.+++++|+|++||++|+.+++.+.++++
T Consensus       401 ~~~~l~~~~~~~--L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~  450 (452)
T PRK07445        401 SLEELKTAIKDQ--LSPFKQPKHWIPVPQLPRNPQGKINRQQLQQIAVQRLG  450 (452)
T ss_pred             CHHHHHHHHHHh--CCcccCCeEEEEecCCCCCCCcccCHHHHHHHHHHhhC
Confidence            467899999999  99999999999999999999999999999988766543

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=98.71  E-value=3e-08  Score=65.88  Aligned_cols=47  Identities=17%  Similarity=0.349  Sum_probs=43.1

Q ss_pred             CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77             2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME   50 (75)
Q Consensus         2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~   50 (75)
                      .+.+++.+++++.  ++.|++|..+.+++++|+|++||++|+.|++.+.
T Consensus       310 ~~~~~i~~~~~~~--l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~  356 (358)
T PRK07824        310 PTLEALRAHVART--LDRTAAPRELHVVDELPRRGIGKVDRRALVRRFA  356 (358)
T ss_pred             cCHHHHHHHHHhh--CccccCCCEEEEecCCCCCCCccccHHHHHHHhh
Confidence            3567899999999  9999999999999999999999999999998764

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.70  E-value=2.9e-08  Score=69.78  Aligned_cols=47  Identities=32%  Similarity=0.604  Sum_probs=44.7

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      +.+++.++|+.+  ++.|++|+.+.+++++|+|++||++|+.+++....
T Consensus       481 ~~~~i~~~~~~~--l~~~~~P~~v~~v~~lP~t~sGKi~r~~lr~~~~~  527 (534)
T COG0318         481 TAEELRAFLRKR--LALYKVPRIVVFVDELPRTASGKIDRRALREEYRA  527 (534)
T ss_pred             CHHHHHHHHHhh--hhcccCCeEEEEeCCCCCCCchhhhHHHHHHHHHh
Confidence            689999999999  99999999999999999999999999999998765

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.69  E-value=3.3e-08  Score=68.73  Aligned_cols=49  Identities=29%  Similarity=0.518  Sum_probs=44.9

Q ss_pred             CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      +...+++.|+.+.| ++.||+|.+|.+++++|.|+.|||+|+.|++.+..
T Consensus       490 ~~~~qlr~~L~~~G-lAa~K~PDrie~v~~~P~T~VGKIdKk~Lr~~l~~  538 (542)
T COG1021         490 LRAAQLRRFLRERG-LAAFKLPDRIEFVDSLPLTAVGKIDKKALRRRLAS  538 (542)
T ss_pred             CCHHHHHHHHHHcc-hhhhcCCcceeecccCCCcccccccHHHHHHHhhh
Confidence            56789999999998 99999999999999999999999999999986643

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=98.64  E-value=6e-08  Score=67.89  Aligned_cols=48  Identities=29%  Similarity=0.475  Sum_probs=43.9

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK   52 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~   52 (75)
                      +.+++.++++.+  +++|++|..+.+++++|+|++||++|+.|++....+
T Consensus       511 ~~~~l~~~~~~~--l~~~~~P~~i~~v~~iP~t~sGKi~r~~L~~~~~~~  558 (562)
T PRK05677        511 TKEQVMEHMRAN--LTGYKVPKAVEFRDELPTTNVGKILRRELRDEELKK  558 (562)
T ss_pred             CHHHHHHHHHHh--hhhccCCcEEEEeccCCCCCcccccHHHHHHHHHHh
Confidence            567899999999  999999999999999999999999999999866554

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=98.64  E-value=6.4e-08  Score=69.35  Aligned_cols=44  Identities=14%  Similarity=0.356  Sum_probs=41.6

Q ss_pred             HHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77             5 QHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME   50 (75)
Q Consensus         5 ~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~   50 (75)
                      ++++++++.+  |++|++|+.+.+++++|+|++||++|+.|++.+.
T Consensus       582 ~~l~~~~~~~--l~~~~~P~~i~~v~~lP~T~sGKi~r~~Lr~~~~  625 (652)
T TIGR01217       582 DRIKRTIRAG--LSPRHVPDEIIEVPGIPHTLTGKRVEVAVKRVLQ  625 (652)
T ss_pred             HHHHHHHHhh--CCCCcCCCEEEECCCCCCCCCccChHHHHHHHHc
Confidence            5899999999  9999999999999999999999999999998864

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK12316 peptide synthase; Provisional

Probab=98.62  E-value=3.3e-08  Score=82.41  Aligned_cols=70  Identities=14%  Similarity=0.196  Sum_probs=58.1

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhcC
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED----KMILIIAVIHCQVQAYLSGLLDS   74 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~   74 (75)
                      +.++++++++++  |+.|++|..+.+++++|+|++||++|+.|.+....    ........++..++.+|+.+|+.
T Consensus       960 ~~~~l~~~l~~~--Lp~y~vP~~i~~v~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~e~~l~~iw~~vL~~ 1033 (5163)
T PRK12316        960 WREALKAHLAAS--LPEYMVPAQWLALERLPLTPNGKLDRKALPAPEASVAQQGYVAPRNALERTLAAIWQDVLGV 1033 (5163)
T ss_pred             CHHHHHHHHHhh--CCCccCCCeEEEHhhCCCCCCCChhHHhhcCccccccccccCCCCCHHHHHHHHHHHHHhCC
Confidence            467899999999  99999999999999999999999999999764322    11223466788999999999874

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=98.61  E-value=9.7e-08  Score=68.95  Aligned_cols=49  Identities=16%  Similarity=0.326  Sum_probs=43.0

Q ss_pred             CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      ++.+++.+++++++ ++.|++|+.+.+++++|+|++||++|+.|++.+..
T Consensus       665 ~~~~~l~~~~~~~~-l~~~~vP~~i~~v~~lP~t~~GKi~r~~L~~~~~~  713 (718)
T PRK08043        665 LTREKLQQYAREHG-VPELAVPRDIRYLKQLPLLGSGKPDFVTLKSMVDE  713 (718)
T ss_pred             cCHHHHHHHHHhcC-CCcccCCceEEEecccCcCCCCCcCHHHHHHHHhc
Confidence            35678999998754 89999999999999999999999999999986643

>PRK05691 peptide synthase; Validated

Probab=98.60  E-value=2e-08  Score=82.78  Aligned_cols=68  Identities=10%  Similarity=0.230  Sum_probs=57.1

Q ss_pred             HHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhcC
Q psy77             5 QHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK-----MILIIAVIHCQVQAYLSGLLDS   74 (75)
Q Consensus         5 ~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~   74 (75)
                      ++++.+++.+  |+.|++|..+.+++++|+|++||++|+.|.+.....     ........+..++++|+.+|+.
T Consensus      4184 ~~l~~~l~~~--Lp~ymvP~~~~~~~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~p~~~~e~~l~~iw~~vL~~ 4256 (4334)
T PRK05691       4184 ERIKQRLRAE--LPDYMVPLHWLWLDRLPLNANGKLDRKALPALDIGQLQSQAYLAPRNELEQTLATIWADVLKV 4256 (4334)
T ss_pred             HHHHHHHHhh--CChhhcCcceeecccCCCCCCCcccHhhcCCCccccccccccCCCCCHHHHHHHHHHHHHhCC
Confidence            5789999999  999999999999999999999999999997642211     1234578899999999999974

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=98.60  E-value=9.8e-08  Score=68.11  Aligned_cols=45  Identities=20%  Similarity=0.383  Sum_probs=41.9

Q ss_pred             HHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             5 QHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         5 ~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      +++.++++.+  +++|++|+.+.+++++|+|++||++|+.|++.+.+
T Consensus       581 ~~l~~~~~~~--L~~~~~P~~i~~v~~lP~t~sGKi~r~~lr~~~~~  625 (655)
T PRK03584        581 ARIRTTIRTN--LSPRHVPDKIIAVPDIPRTLSGKKVELPVKKLLHG  625 (655)
T ss_pred             HHHHHHHHhh--CCCCcCCCEEEECCCCCCCCCccchHHHHHHHHcC
Confidence            5799999999  99999999999999999999999999999987653

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=98.59  E-value=9.9e-08  Score=67.90  Aligned_cols=45  Identities=38%  Similarity=0.579  Sum_probs=41.8

Q ss_pred             HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77             4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME   50 (75)
Q Consensus         4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~   50 (75)
                      .++|.+++++.  +++++.|+.|.|+++||+|.+|||.|+.||+...
T Consensus       477 ~~ei~~~vr~~--~~~~~~p~~i~fv~~LPkT~sGKI~R~~lr~~~~  521 (528)
T COG0365         477 AEEIRRHVARN--IGPHAIPRKIRFVDELPKTASGKIQRRLLRKILH  521 (528)
T ss_pred             HHHHHHHHHhc--cCcccCCceEEEecCCCCCCcccHHHHHHHHHHh
Confidence            57899999999  8889999999999999999999999999998765

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=98.59  E-value=9.6e-08  Score=67.06  Aligned_cols=47  Identities=23%  Similarity=0.487  Sum_probs=43.6

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      +.+++.++++.+  |++|++|+.+.+++++|+|++||++|+.|++++..
T Consensus       511 ~~~~l~~~l~~~--L~~~~~P~~i~~v~~~P~t~~GKv~r~~L~~~~~~  557 (576)
T PRK05620        511 TAERLRDQLRDR--LPNWMLPEYWTFVDEIDKTSVGKFDKKDLRQHLAD  557 (576)
T ss_pred             cHHHHHHHHHhh--CccccCCeEEEEeccCCCCCcccCcHHHHHHHHhc
Confidence            357899999999  99999999999999999999999999999988764

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=98.59  E-value=3.2e-08  Score=74.61  Aligned_cols=70  Identities=13%  Similarity=0.109  Sum_probs=56.8

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhcC
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED---KMILIIAVIHCQVQAYLSGLLDS   74 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~   74 (75)
                      +.++++++++.+  |+.|++|..+.+++++|+|++||++|+.|+.....   .........+..+..+|+.+|+.
T Consensus       921 ~~~~l~~~l~~~--Lp~~~~P~~~~~~~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~e~~l~~~~~~~l~~  993 (1296)
T PRK10252        921 DTSALQAQLRER--LPPHMVPVVLLQLDQLPLSANGKLDRKALPLPELKAQVPGRAPKTGTETIIAAAFSSLLGC  993 (1296)
T ss_pred             CHHHHHHHHHhh--CchhcCCcEEEEecCCCCCCCcChhHHhcCCCcccccccCCCCCCHHHHHHHHHHHHHhCC
Confidence            567899999999  99999999999999999999999999999763211   11123456778899999999864

>PRK07788 acyl-CoA synthetase; Validated

Probab=98.59  E-value=6.6e-08  Score=67.37  Aligned_cols=44  Identities=32%  Similarity=0.587  Sum_probs=40.9

Q ss_pred             CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHH
Q psy77             2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSK   47 (75)
Q Consensus         2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~   47 (75)
                      .+.++++++++++  +++|++|..+.+++++|+|++||++|+.|++
T Consensus       504 ~~~~~l~~~~~~~--l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~  547 (549)
T PRK07788        504 LDEDAIKDYVRDN--LARYKVPRDVVFLDELPRNPTGKVLKRELRE  547 (549)
T ss_pred             CCHHHHHHHHHHh--hhcCCCCcEEEEeCCCCCCCCcCEeHHHhhc
Confidence            3568899999999  9999999999999999999999999999875

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=98.58  E-value=6.9e-08  Score=68.06  Aligned_cols=48  Identities=21%  Similarity=0.263  Sum_probs=43.7

Q ss_pred             CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      ++.+++.++|+.+  |+.|++|+.+.+++++|+|.+||++|+.|+++..+
T Consensus       517 ~~~~~l~~~l~~~--L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~  564 (600)
T PRK08279        517 FDLAALAAHLYER--LPAYAVPLFVRLVPELETTGTFKYRKVDLRKEGFD  564 (600)
T ss_pred             CCHHHHHHHHHhh--CccccCCeEEEeecCCCCCcchhhhHHHHhhcCCC
Confidence            3568899999999  99999999999999999999999999999886544

>PLN03102 acyl-activating enzyme; Provisional

Probab=98.58  E-value=2.3e-07  Score=65.46  Aligned_cols=49  Identities=27%  Similarity=0.417  Sum_probs=44.5

Q ss_pred             HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHHH
Q psy77             4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMI   54 (75)
Q Consensus         4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~~   54 (75)
                      ..++.++++.+  |++|++|..+.+++++|+|++||++|+.|++++.+...
T Consensus       509 ~~~l~~~~~~~--L~~~~~P~~i~~~~~~P~t~~gKi~r~~L~~~~~~~~~  557 (579)
T PLN03102        509 ERDLIEYCREN--LPHFMCPRKVVFLQELPKNGNGKILKPKLRDIAKGLVV  557 (579)
T ss_pred             HHHHHHHHHhh--cccccCCeEEEEcccCCCCCcccccHHHHHHHHHHhhh
Confidence            46799999999  99999999999999999999999999999998766443

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=98.58  E-value=8.3e-08  Score=68.80  Aligned_cols=45  Identities=27%  Similarity=0.507  Sum_probs=41.4

Q ss_pred             HHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             5 QHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         5 ~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      ++|+++++.+  +++|++|+.|.+++++|+|++||++|+.|++.+.+
T Consensus       579 ~~i~~~~~~~--l~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~  623 (647)
T PTZ00237        579 NEINNIITQD--IESLAVLRKIIIVNQLPKTKTGKIPRQIISKFLND  623 (647)
T ss_pred             HHHHHHHHhh--cCccccCcEEEEcCCCCCCCCccEeHHHHHHHHcC
Confidence            4678899999  99999999999999999999999999999998754

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=98.57  E-value=8.1e-08  Score=68.32  Aligned_cols=46  Identities=28%  Similarity=0.315  Sum_probs=42.6

Q ss_pred             HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      .++|+++++++  |++|++|+.+.+++++|+|++||++|+.|++.+..
T Consensus       559 ~~~i~~~~~~~--L~~~~~P~~v~~v~~lP~t~sGKi~r~~L~~~~~~  604 (628)
T TIGR02316       559 ETGMMDCVVRQ--LGAVARPARVYFVAALPKTRSGKLLRRSIQALAEG  604 (628)
T ss_pred             HHHHHHHHHHh--cCCCcCCCEEEEcCCCCCCCchHHHHHHHHHHHcC
Confidence            46899999999  99999999999999999999999999999987653

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PRK12467 peptide synthase; Provisional

Probab=98.55  E-value=3.6e-08  Score=81.04  Aligned_cols=70  Identities=16%  Similarity=0.258  Sum_probs=58.5

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhcC
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED---KMILIIAVIHCQVQAYLSGLLDS   74 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~   74 (75)
                      +.++++++++.+  |+.|++|..+.+++++|+|++||++|+.|.+....   ......+..+..++++|+.+|+.
T Consensus      3548 ~~~~l~~~l~~~--Lp~y~vP~~~~~l~~lP~t~~GKidR~~L~~~~~~~~~~~~~p~~~~e~~l~~i~~~vL~~ 3620 (3956)
T PRK12467       3548 WRETLRDHLAAS--LPDYMVPAQLLVLAAMPLGPNGKVDRKALPDPDAKGSREYVAPRSEVEQQLAAIWADVLGV 3620 (3956)
T ss_pred             cHHHHHHHHhcc--CChhhCCCeeeeeccCCCCCCCccchhhcCCCCccccccccCCCCHHHHHHHHHHHHHhCC
Confidence            457899999999  99999999999999999999999999999865432   11234567788999999999874

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=98.55  E-value=6e-08  Score=73.85  Aligned_cols=68  Identities=19%  Similarity=0.271  Sum_probs=52.9

Q ss_pred             HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhh
Q psy77             4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMI------------LIIAVIHCQVQAYLSGL   71 (75)
Q Consensus         4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~~------------~~~~~~~~~~~~~~~~~   71 (75)
                      .++++++++++  |+.|++|..+.+++++|+|++||++|+.|+........            ......+..++.+|+.+
T Consensus       783 ~~~l~~~l~~~--Lp~y~~P~~~~~~~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v  860 (1389)
T TIGR03443       783 IKDIREYLKKK--LPSYAIPTVIVPLKKLPLNPNGKVDKPALPFPDTAQLAAVAKNRSASAADEEFTETEREIRDLWLEL  860 (1389)
T ss_pred             HHHHHHHHHhh--CCcccCCceEEEcccCCCCCCccccHhhcCCCchhhhhhhhccccccccCCCCCHHHHHHHHHHHHH
Confidence            35789999999  99999999999999999999999999998642211111            12245667788899888


Q ss_pred             hc
Q psy77            72 LD   73 (75)
Q Consensus        72 ~~   73 (75)
                      |+
T Consensus       861 l~  862 (1389)
T TIGR03443       861 LP  862 (1389)
T ss_pred             hC
Confidence            75

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK07470 acyl-CoA synthetase; Validated

Probab=98.54  E-value=1.9e-07  Score=64.70  Aligned_cols=48  Identities=27%  Similarity=0.452  Sum_probs=43.8

Q ss_pred             CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      ++.+++.+++++.  +++|++|..+.+++++|+|++||++|+.+++++..
T Consensus       471 ~~~~~~~~~l~~~--l~~~~~P~~~~~~~~iP~t~~GKi~r~~l~~~~~~  518 (528)
T PRK07470        471 VDEAELLAWLDGK--VARYKLPKRFFFWDALPKSGYGKITKKMVREELEE  518 (528)
T ss_pred             CCHHHHHHHHHHh--hhcCCCCcEEEEeccCCCCCcccccHHHHHHHHHh
Confidence            4567899999999  99999999999999999999999999999887654

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=98.53  E-value=2e-07  Score=64.98  Aligned_cols=47  Identities=34%  Similarity=0.509  Sum_probs=43.4

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      +.+++.++++++  +++|+.|+.+.+++++|+|++||++|+.+++.+.+
T Consensus       487 ~~~~l~~~~~~~--l~~~~~P~~i~~v~~lP~t~sgKi~r~~l~~~~~~  533 (539)
T PRK07008        487 TREELLAFYEGK--VAKWWIPDDVVFVDAIPHTATGKLQKLKLREQFRD  533 (539)
T ss_pred             CHHHHHHHHHhh--cccccCCeEEEEecCCCCCCccceeHHHHHHHHHh
Confidence            567899999999  99999999999999999999999999999987654

>PLN02654 acetate-CoA ligase

Probab=98.53  E-value=1.6e-07  Score=67.58  Aligned_cols=45  Identities=27%  Similarity=0.424  Sum_probs=41.9

Q ss_pred             HHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             5 QHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         5 ~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      ++|.++++.+  |++|++|+.+.+++++|+|++||++|+.|++.+.+
T Consensus       596 ~~l~~~~~~~--L~~~~~P~~i~~v~~lP~T~sGKi~r~~l~~~~~~  640 (666)
T PLN02654        596 KSLILTVRNQ--IGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASR  640 (666)
T ss_pred             HHHHHHHHHh--CCCCcCCCEEEECCCCCCCCCcCchHHHHHHHHcC
Confidence            4788999999  99999999999999999999999999999998764

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=98.53  E-value=1.5e-07  Score=65.91  Aligned_cols=48  Identities=19%  Similarity=0.210  Sum_probs=41.7

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      +.++++++++.+. ++.|+.|+.+.+++++|+|++||++|+.|++.+..
T Consensus       488 ~~~~~~~~l~~~~-~~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~  535 (539)
T PRK06334        488 SISEVNDILKNSK-TSSILKISYHHQVESIPMLGTGKPDYCSLNALAKS  535 (539)
T ss_pred             ChHHHHHHHHhcC-CcccccchheeeecccccccCCcccHHHHHHHHHH
Confidence            4578999998842 68999999999999999999999999999887544

>PLN02574 4-coumarate--CoA ligase-like

Probab=98.52  E-value=2.3e-07  Score=65.08  Aligned_cols=47  Identities=30%  Similarity=0.410  Sum_probs=43.3

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      +.+++.++++++  +++|+.|+.+.+++++|+|++||++|+.|++.+..
T Consensus       508 ~~~~l~~~~~~~--l~~~~~p~~v~~v~~iP~t~~GKi~r~~L~~~~~~  554 (560)
T PLN02574        508 SQEAVINYVAKQ--VAPYKKVRKVVFVQSIPKSPAGKILRRELKRSLTN  554 (560)
T ss_pred             CHHHHHHHHHHh--ccCcccCcEEEEeeccCCCCcchhhHHHHHHHHhh
Confidence            567899999999  99999999999999999999999999999987643

>PLN03051 acyl-activating enzyme; Provisional

Probab=98.52  E-value=2.3e-07  Score=64.30  Aligned_cols=49  Identities=16%  Similarity=0.280  Sum_probs=38.3

Q ss_pred             CHHHHHHHH----hhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHH
Q psy77             3 MIQHTDEVV----KGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM   53 (75)
Q Consensus         3 ~~~~l~~~~----~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~   53 (75)
                      +.+++.++|    +++  ++.|+.|..+.++++||+|++||++|+.|++.+....
T Consensus       441 ~~~~l~~~~~~~l~~~--l~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~  493 (499)
T PLN03051        441 RPEALQKKFQEAIQTN--LNPLFKVSRVKIVPELPRNASNKLLRRVLRDQLKKEL  493 (499)
T ss_pred             chHHHHHHHHHHHHhh--cCCccCCceEEEcCCCCCCCCccHHHHHHHHHHHHhh
Confidence            456676666    456  7776666789999999999999999999998665543

>PLN02246 4-coumarate--CoA ligase

Probab=98.50  E-value=2.4e-07  Score=64.46  Aligned_cols=45  Identities=29%  Similarity=0.371  Sum_probs=42.0

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQM   49 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~   49 (75)
                      +.++++++++.+  ++.|+.|..+.+++++|+|++||++|..|++.+
T Consensus       490 ~~~~l~~~l~~~--l~~~~~p~~i~~~~~~P~t~~GKi~r~~L~~~~  534 (537)
T PLN02246        490 TEDEIKQFVAKQ--VVFYKRIHKVFFVDSIPKAPSGKILRKDLRAKL  534 (537)
T ss_pred             CHHHHHHHHHhh--CcCccccceEEEeccCCCCCcchhhHHHHHHHH
Confidence            467899999999  999999999999999999999999999998765

>PRK05852 acyl-CoA synthetase; Validated

Probab=98.49  E-value=1.9e-07  Score=64.90  Aligned_cols=46  Identities=15%  Similarity=0.370  Sum_probs=42.8

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME   50 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~   50 (75)
                      +.+++.++++++  +++|++|+.+.+++++|+|++||++|+.|++.+.
T Consensus       486 ~~~~i~~~~~~~--l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~  531 (534)
T PRK05852        486 TAEELVQFCRER--LAAFEIPASFQEASGLPHTAKGSLDRRAVAEQFG  531 (534)
T ss_pred             CHHHHHHHHHHh--cccccCCeEEEEhhhcCCCCCccccHHHHHHHhc
Confidence            567899999999  9999999999999999999999999999998764

>PRK07638 acyl-CoA synthetase; Validated

Probab=98.49  E-value=2.6e-07  Score=63.42  Aligned_cols=47  Identities=28%  Similarity=0.422  Sum_probs=43.2

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      +.+++.+++++.  +++|++|+.+.+++++|+|++||++|+.|++.+..
T Consensus       435 ~~~~l~~~~~~~--l~~~~~p~~i~~v~~iP~t~~GKv~r~~L~~~~~~  481 (487)
T PRK07638        435 TKQQLKSFCLQR--LSSFKIPKEWHFVDEIPYTNSGKIARMEAKSWIEN  481 (487)
T ss_pred             CHHHHHHHHHHH--hhcccCCcEEEEecccCCCCcccccHHHHHHHHhc
Confidence            567899999999  99999999999999999999999999999987654

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=98.49  E-value=3.4e-07  Score=63.54  Aligned_cols=46  Identities=37%  Similarity=0.458  Sum_probs=42.1

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME   50 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~   50 (75)
                      +.+++.++|+++  ++.|++|..+.+++++|+|.+||++|+.|++...
T Consensus       496 ~~~~l~~~~~~~--l~~~~~P~~~~~v~~iP~t~~GKv~r~~L~~~~~  541 (546)
T PRK08314        496 TEEEIIAWAREH--MAAYKYPRIVEFVDSLPKSGSGKILWRQLQEQEK  541 (546)
T ss_pred             CHHHHHHHHHHh--cccCCCCcEEEEecCCCCCCccceeHHHHHHHHh
Confidence            457899999999  9999999999999999999999999999987554

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=98.48  E-value=3.8e-07  Score=63.98  Aligned_cols=50  Identities=18%  Similarity=0.357  Sum_probs=42.4

Q ss_pred             CHHHHHHHHhh-CCCCCCCCCccEEEEe-ccCCCCCCCcchHHHHHHHHHHHHH
Q psy77             3 MIQHTDEVVKG-SMVIAHYKIPRYVEFV-ADFPKTVSGKIQKYVLSKQMEDKMI   54 (75)
Q Consensus         3 ~~~~l~~~~~~-~~~l~~~~~P~~i~~v-~~lP~t~~gKi~r~~l~~~~~~~~~   54 (75)
                      +.+++.+++++ +  |++|++|+.+.++ +++|+|++||++|+.|++++.....
T Consensus       506 ~~~~l~~~~~~~~--L~~~~~P~~~~~~~~~lP~t~~GKi~r~~L~~~~~~~~~  557 (563)
T PLN02860        506 SSETLRHHCREKN--LSRFKIPKLFVQWRKPFPLTTTGKIRRDEVRREVLSHLQ  557 (563)
T ss_pred             cHHHHHHHHhhCc--ccccccceEEEEEecCCCCCcccchhHHHHHHHHHHHHh
Confidence            45678999987 7  9999999998765 6799999999999999988766543

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=98.48  E-value=2.4e-07  Score=65.71  Aligned_cols=46  Identities=26%  Similarity=0.343  Sum_probs=42.2

Q ss_pred             HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      .+++.++++.+  +++|+.|..+.+++++|+|++||++|+.|++...+
T Consensus       560 ~~~i~~~~~~~--l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~  605 (629)
T PRK10524        560 EKEIMALVDSQ--LGAVARPARVWFVSALPKTRSGKLLRRAIQAIAEG  605 (629)
T ss_pred             HHHHHHHHHhh--cCCCcCCCEEEEcCCCCCCCCcchHHHHHHHHHcC
Confidence            35789999999  99999999999999999999999999999987653

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=98.48  E-value=2.7e-07  Score=64.71  Aligned_cols=44  Identities=34%  Similarity=0.426  Sum_probs=41.1

Q ss_pred             HHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77             5 QHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME   50 (75)
Q Consensus         5 ~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~   50 (75)
                      +++.++++++  ++.|+.|+.+.+++++|+|++||++|+.|++...
T Consensus       515 ~~l~~~~~~~--l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~  558 (570)
T PRK04319        515 EEIRGFVKKG--LGAHAAPREIEFKDKLPKTRSGKIMRRVLKAWEL  558 (570)
T ss_pred             HHHHHHHHHh--cccccCCcEEEEeCCCCCCCchhhhHHHHHHHHh
Confidence            5799999999  9999999999999999999999999999998753

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=98.47  E-value=3.2e-07  Score=65.05  Aligned_cols=46  Identities=30%  Similarity=0.444  Sum_probs=42.6

Q ss_pred             HHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77             5 QHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK   52 (75)
Q Consensus         5 ~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~   52 (75)
                      ++++++++++  +++|++|+.+.+++++|+|++||++|+.|++.+...
T Consensus       558 ~~l~~~~~~~--l~~~~~P~~i~~v~~lP~t~sGKi~r~~l~~~~~~~  603 (625)
T TIGR02188       558 KELRKHVRKE--IGPIAKPDKIRFVPGLPKTRSGKIMRRLLRKIAAGE  603 (625)
T ss_pred             HHHHHHHHhh--cCCCccCcEEEECCCCCCCCCccchHHHHHHHHcCC
Confidence            6799999999  999999999999999999999999999999886554

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PRK06060 acyl-CoA synthetase; Validated

Probab=98.47  E-value=2.2e-07  Score=66.89  Aligned_cols=43  Identities=23%  Similarity=0.420  Sum_probs=39.9

Q ss_pred             HHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHH
Q psy77             5 QHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQM   49 (75)
Q Consensus         5 ~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~   49 (75)
                      +++.++++++  |+.|++|..+.+++++|+|++||++|+.|++.+
T Consensus       448 ~~i~~~l~~~--L~~~~~P~~i~~v~~iP~t~~GKidr~~L~~~~  490 (705)
T PRK06060        448 RDLHRGLLNR--LSAFKVPHRFAVVDRLPRTPNGKLVRGALRKQS  490 (705)
T ss_pred             HHHHHHHHHh--CCCCcCCcEEEEeecCCCCcchhhHHHHHHhhc
Confidence            4788899999  999999999999999999999999999998754

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=98.47  E-value=3.7e-07  Score=63.66  Aligned_cols=47  Identities=34%  Similarity=0.521  Sum_probs=43.2

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      +.+++.++++.+  +++|++|+.+.+++++|+|++||++|+.|++.+..
T Consensus       488 ~~~~l~~~~~~~--l~~~~~P~~i~~v~~iP~t~~GKi~r~~L~~~~~~  534 (542)
T PRK06018        488 TREEILKYMDGK--IAKWWMPDDVAFVDAIPHTATGKILKTALREQFKD  534 (542)
T ss_pred             CHHHHHHHHHhh--CccccCCcEEEEeccCCCCCcchhhHHHHHHHHhc
Confidence            567899999999  99999999999999999999999999999987644

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=98.47  E-value=4.1e-07  Score=62.15  Aligned_cols=47  Identities=26%  Similarity=0.517  Sum_probs=43.2

Q ss_pred             CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77             2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME   50 (75)
Q Consensus         2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~   50 (75)
                      .+.+++.++++..  ++.|++|..+.+++++|+|++||++|+.|++.+.
T Consensus       435 ~~~~~l~~~~~~~--l~~~~~p~~i~~~~~iP~t~~gK~~r~~l~~~~~  481 (483)
T PRK03640        435 VTEEELRHFCEEK--LAKYKVPKRFYFVEELPRNASGKLLRHELKQLVE  481 (483)
T ss_pred             CCHHHHHHHHHHh--ccCCCCCcEEEEeCCCCCCCccceeHHHHHHHHh
Confidence            3567899999999  9999999999999999999999999999998764

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=98.47  E-value=2.2e-07  Score=63.41  Aligned_cols=48  Identities=15%  Similarity=0.167  Sum_probs=44.2

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK   52 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~   52 (75)
                      +.+++.++++++  +++|++|..+.+++++|+|.+||++|+.|++++...
T Consensus       407 ~~~~l~~~~~~~--l~~~~~P~~~~~~~~~p~t~~gKi~r~~L~~~~~~~  454 (458)
T PRK09029        407 AVVNLAEWLQDK--LARFQQPVAYYLLPPELKNGGIKISRQALKEWVAQQ  454 (458)
T ss_pred             CHHHHHHHHHhh--chhccCCeEEEEecccccCcCCCcCHHHHHHHHHhc
Confidence            567899999999  999999999999999999999999999999887654

>PRK06839 acyl-CoA synthetase; Validated

Probab=98.47  E-value=4.2e-07  Score=62.17  Aligned_cols=46  Identities=35%  Similarity=0.559  Sum_probs=42.3

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME   50 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~   50 (75)
                      +.++++++++..  ++.|++|..+.+++++|+|++||++|..++++..
T Consensus       449 ~~~~l~~~~~~~--l~~~~~P~~~~~v~~~P~t~~GKi~r~~l~~~~~  494 (496)
T PRK06839        449 IEKDVIEHCRLF--LAKYKIPKEIVFLKELPKNATGKIQKAQLVNQLK  494 (496)
T ss_pred             CHHHHHHHHHhh--CcCCCCCcEEEEeccCCCCccccccHHHHHHHhh
Confidence            567899999999  9999999999999999999999999999987653

>PRK12467 peptide synthase; Provisional

Probab=98.46  E-value=1.2e-07  Score=78.19  Aligned_cols=70  Identities=14%  Similarity=0.267  Sum_probs=57.6

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhcC
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK----MILIIAVIHCQVQAYLSGLLDS   74 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~   74 (75)
                      ..+++++++++.  |+.|++|..+.+++++|+|++||++|+.|.+.....    ........+..++.+|+.+|+.
T Consensus       972 ~~~~l~~~l~~~--Lp~y~vP~~~~~l~~lP~t~~GKidR~~L~~~~~~~~~~~~~~p~~~~e~~l~~i~~~vL~~ 1045 (3956)
T PRK12467        972 TRDELKAQLRQV--LPDYMVPAHLLLLDSLPLTPNGKLDRKALPKPDASAVQATFVAPQTELEKRLAAIWADVLKV 1045 (3956)
T ss_pred             CHHHHHHHHHhh--CchhcCCceEeeecccCCCCCCCcCHhhcCCcccccccccccCCCCHHHHHHHHHHHHHhCC
Confidence            357899999999  999999999999999999999999999997653221    1223456788999999999874

>PRK12316 peptide synthase; Provisional

Probab=98.45  E-value=9e-08  Score=79.96  Aligned_cols=69  Identities=17%  Similarity=0.323  Sum_probs=56.9

Q ss_pred             HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhcC
Q psy77             4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM----ILIIAVIHCQVQAYLSGLLDS   74 (75)
Q Consensus         4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~   74 (75)
                      .++++++++++  |+.||+|..+.+++++|+|++||++|+.|.+......    ....+..+..++++|+.+|+.
T Consensus      3499 ~~~l~~~l~~~--Lp~ymvP~~~~~~~~lP~t~~GKvdr~~L~~~~~~~~~~~~~~p~~~~e~~l~~iw~~vL~~ 3571 (5163)
T PRK12316       3499 REALKAHLKAS--LPEYMVPAHLLFLERMPLTPNGKLDRKALPRPDAALLQQDYVAPVNELERRLAAIWADVLKL 3571 (5163)
T ss_pred             HHHHHHHHHhh--CCcccCcceeeeHhhcCCCCCcchhHHhcCCCccccccccccCCCCHHHHHHHHHHHHHhCC
Confidence            46799999999  9999999999999999999999999999975432211    123467788999999999874

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=98.45  E-value=4.6e-07  Score=63.15  Aligned_cols=54  Identities=22%  Similarity=0.373  Sum_probs=48.0

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMILIIA   58 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~~~~~~   58 (75)
                      +.+++.++++.+  +++|+.|..+.+++++|+|++||++|+.|++.+......++.
T Consensus       478 ~~~~l~~~l~~~--l~~~~~P~~i~~v~~iP~t~~GKv~r~~L~~~~~~~~~~~~~  531 (542)
T PRK07786        478 TLEDLAEFLTDR--LARYKHPKALEIVDALPRNPAGKVLKTELRERYGACVNVERR  531 (542)
T ss_pred             CHHHHHHHHHhh--ccCCCCCCEEEEeccCCCCCcccccHHHHHHHHHhhhchhhc
Confidence            457899999999  999999999999999999999999999999988776655543

>PRK06145 acyl-CoA synthetase; Validated

Probab=98.44  E-value=3.9e-07  Score=62.53  Aligned_cols=46  Identities=26%  Similarity=0.551  Sum_probs=42.3

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME   50 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~   50 (75)
                      +.+++.++++.+  +++|+.|..+.+++++|+|++||++|+.|+++..
T Consensus       451 ~~~~l~~~~~~~--l~~~~~p~~i~~v~~iP~t~~GKi~r~~l~~~~~  496 (497)
T PRK06145        451 TLEALDRHCRQR--LASFKVPRQLKVRDELPRNPSGKVLKRVLRDELN  496 (497)
T ss_pred             CHHHHHHHHHHh--hhcCCCCCEEEEeccCCCCCcccccHHHHHHHhc
Confidence            467899999999  9999999999999999999999999999998653

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=98.44  E-value=5.1e-07  Score=63.24  Aligned_cols=49  Identities=18%  Similarity=0.414  Sum_probs=44.5

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM   53 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~   53 (75)
                      +.+++.++++.+  +++|++|..+.+++++|+|.+||++|+.|++++....
T Consensus       523 ~~~~l~~~~~~~--l~~~~~p~~i~~~~~iP~t~~GKi~r~~L~~~~~~~~  571 (573)
T PRK05605        523 DPEGLRAYCREH--LTRYKVPRRFYHVDELPRDQLGKVRRREVREELLEKL  571 (573)
T ss_pred             CHHHHHHHHHHh--CccccCCcEEEEeccCCCCCcccccHHHHHHHHHHHh
Confidence            567899999999  9999999999999999999999999999998776543

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=98.44  E-value=4.1e-07  Score=63.65  Aligned_cols=46  Identities=41%  Similarity=0.587  Sum_probs=42.6

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME   50 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~   50 (75)
                      +..++.++++++  ++.|++|..+.+++++|+|++||++|+.++++..
T Consensus       478 ~~~~~~~~~~~~--l~~~~~P~~i~~~~~iP~t~~GKi~r~~l~~~~~  523 (542)
T PRK06155        478 EPVALVRHCEPR--LAYFAVPRYVEFVAALPKTENGKVQKFVLREQGV  523 (542)
T ss_pred             CHHHHHHHHHhh--CcCccCCcEEEEeccCCCCcccceeHHHHHhhcc
Confidence            567899999999  9999999999999999999999999999988653

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=98.44  E-value=4.4e-07  Score=64.56  Aligned_cols=47  Identities=30%  Similarity=0.439  Sum_probs=42.9

Q ss_pred             HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77             4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK   52 (75)
Q Consensus         4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~   52 (75)
                      .++|.++++++  ++.|+.|+.+.+++++|+|++||++|+.|++.....
T Consensus       565 ~~~l~~~l~~~--l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~  611 (637)
T PRK00174        565 RKELRNWVRKE--IGPIAKPDVIQFAPGLPKTRSGKIMRRILRKIAEGE  611 (637)
T ss_pred             HHHHHHHHHhh--cCCccCCCEEEEcCCCCCCCCcchHHHHHHHHHcCC
Confidence            46899999999  999999999999999999999999999999876544

>PRK07529 AMP-binding domain protein; Validated

Probab=98.43  E-value=6.2e-07  Score=64.02  Aligned_cols=48  Identities=25%  Similarity=0.309  Sum_probs=42.8

Q ss_pred             CCHHHHHHHHhhCCCCC-CCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             2 LMIQHTDEVVKGSMVIA-HYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         2 l~~~~l~~~~~~~~~l~-~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      .+.+++.++++.+  ++ ++++|+.+.+++++|+|++||++|+.|++.+..
T Consensus       522 ~~~~~l~~~~~~~--l~~~~~~P~~i~~v~~lP~t~~GKi~r~~Lr~~~~~  570 (632)
T PRK07529        522 ATEAELLAFARDH--IAERAAVPKHVRILDALPKTAVGKIFKPALRRDAIR  570 (632)
T ss_pred             CCHHHHHHHHHHh--cchhccCCcEEEEecCCCCCCCCcccHHHHHHHHHH
Confidence            3578899999999  86 579999999999999999999999999987654

>PRK05691 peptide synthase; Validated

Probab=98.43  E-value=1.8e-07  Score=77.38  Aligned_cols=70  Identities=14%  Similarity=0.225  Sum_probs=56.9

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhcC
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED--KMILIIAVIHCQVQAYLSGLLDS   74 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   74 (75)
                      +.++++++++.+  |+.|++|..+.+++++|+|++||++|+.|++....  .........+..++.+|+.+|+.
T Consensus      1582 ~~~~l~~~l~~~--Lp~y~vP~~~~~~~~lP~t~~GKidr~~L~~~~~~~~~~~~p~~~~e~~l~~iw~~vL~~ 1653 (4334)
T PRK05691       1582 EAERLKAALAAE--LPEYMVPAQLIRLDQMPLGPSGKLDRRALPEPVWQQREHVEPRTELQQQIAAIWREVLGL 1653 (4334)
T ss_pred             CHHHHHHHHHHh--CccccCCcEEEEccccCCCCCCCcChhhcCcccccccccCCCCCHHHHHHHHHHHHHhCC
Confidence            456899999999  99999999999999999999999999999764321  11123456778899999999864

>PRK12583 acyl-CoA synthetase; Provisional

Probab=98.42  E-value=6.2e-07  Score=62.31  Aligned_cols=48  Identities=40%  Similarity=0.729  Sum_probs=43.7

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK   52 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~   52 (75)
                      +.+++..+++++  |+.|+.|..+.+++++|+|++||++|+.|+++...+
T Consensus       506 ~~~~i~~~~~~~--L~~~~~P~~i~~v~~lP~t~sGK~~r~~L~~~~~~~  553 (558)
T PRK12583        506 SEEELREFCKAR--IAHFKVPRYFRFVDEFPMTVTGKVQKFRMREISIEE  553 (558)
T ss_pred             CHHHHHHHHHhh--cccCcCCcEEEEeccCCCCCCCCccHHHHHHHHHhh
Confidence            467899999999  999999999999999999999999999999876543

>PRK07798 acyl-CoA synthetase; Validated

Probab=98.42  E-value=3.6e-07  Score=62.79  Aligned_cols=47  Identities=23%  Similarity=0.341  Sum_probs=43.3

Q ss_pred             CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77             2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME   50 (75)
Q Consensus         2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~   50 (75)
                      .+.+++.++++.+  ++.|++|..+.+++++|+|++||++|+.+++++.
T Consensus       485 ~~~~~l~~~l~~~--l~~~~~P~~i~~~~~iP~t~~GK~~~~~~~~~~~  531 (533)
T PRK07798        485 PDLAELRAHCRSS--LAGYKVPRAIWFVDEVQRSPAGKADYRWAKEQAA  531 (533)
T ss_pred             CCHHHHHHHHhhh--cccCCCCeEEEEcccCCCCCcchhhHHHHhhhhc
Confidence            3568899999999  9999999999999999999999999999998764

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=98.42  E-value=5.1e-07  Score=63.14  Aligned_cols=48  Identities=29%  Similarity=0.497  Sum_probs=43.7

Q ss_pred             CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      .+.+++.++++.+  ++.|+.|..+.+++++|+|++||++|+.|+++...
T Consensus       508 ~~~~~l~~~~~~~--l~~~~~P~~~~~v~~iP~t~~GKi~r~~L~~~~~~  555 (563)
T PRK06710        508 CSEEELNQFARKY--LAAYKVPKVYEFRDELPKTTVGKILRRVLIEEEKR  555 (563)
T ss_pred             CCHHHHHHHHHHh--cccccCCcEEEEcccCCCCccchhhHHHHHHHHhh
Confidence            3567899999999  99999999999999999999999999999887654

>PRK09088 acyl-CoA synthetase; Validated

Probab=98.42  E-value=6.7e-07  Score=61.32  Aligned_cols=47  Identities=28%  Similarity=0.518  Sum_probs=43.0

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      +.+++.++++.+  +++|++|..+.+++++|+|++||++|+.|++++..
T Consensus       439 ~~~~l~~~~~~~--l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~~~~~  485 (488)
T PRK09088        439 DLERIRSHLSTR--LAKYKVPKHLRLVDALPRTASGKLQKARLRDALAA  485 (488)
T ss_pred             CHHHHHHHHHhh--CcCCCCCCEEEEcccCCCCCCCceeHHHHHHHHHh
Confidence            467899999999  99999999999999999999999999999987654

>PRK08315 AMP-binding domain protein; Validated

Probab=98.41  E-value=7.5e-07  Score=62.01  Aligned_cols=49  Identities=45%  Similarity=0.879  Sum_probs=44.4

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM   53 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~   53 (75)
                      +.+++.++++++  ++.|++|..+.+++++|+|++||++|..|+++.....
T Consensus       505 ~~~~l~~~l~~~--l~~~~~P~~i~~v~~lP~t~~GK~~r~~L~~~~~~~~  553 (559)
T PRK08315        505 TEEDVRDFCRGK--IAHYKIPRYIRFVDEFPMTVTGKIQKFKMREMMIEEL  553 (559)
T ss_pred             CHHHHHHHHHhh--cccccCCcEEEEcccCCCCCCCceeHHHHHHHHHhhh
Confidence            567899999999  9999999999999999999999999999998766543

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=98.40  E-value=1.5e-07  Score=50.45  Aligned_cols=34  Identities=24%  Similarity=0.492  Sum_probs=26.9

Q ss_pred             HHHHHHHHhhCCCCCCCCCccE--EEEecc-CCCCCCCc
Q psy77             4 IQHTDEVVKGSMVIAHYKIPRY--VEFVAD-FPKTVSGK   39 (75)
Q Consensus         4 ~~~l~~~~~~~~~l~~~~~P~~--i~~v~~-lP~t~~gK   39 (75)
                      .++++++++.+  |++|++|+.  +..+++ ||+|++||
T Consensus        37 ~~~i~~~~~~~--l~~~~~P~~~~~v~~~~~lP~t~~GK   73 (73)
T PF13193_consen   37 EEEIRDHLRDK--LPPYMVPRRIRFVRLDEELPRTPSGK   73 (73)
T ss_dssp             HHHHHHHHHHH--S-GGGS-SEEEEEEESSSEEBETTSS
T ss_pred             ecccccchhhh--CCCcceeeEEEEccccCcCCCCCCCC
Confidence            47899999999  999999954  444577 99999998

...

>PRK13390 acyl-CoA synthetase; Provisional

Probab=98.37  E-value=3.9e-07  Score=62.74  Aligned_cols=40  Identities=43%  Similarity=0.704  Sum_probs=37.4

Q ss_pred             HHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHH
Q psy77             5 QHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLS   46 (75)
Q Consensus         5 ~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~   46 (75)
                      +++.++++.+  |+.|+.|..+.+++++|+|++||++|+.|+
T Consensus       462 ~~l~~~~~~~--l~~~~~P~~~~~~~~iP~t~~GKi~r~~L~  501 (501)
T PRK13390        462 RELIDYTRSR--IAHYKAPRSVEFVDELPRTPTGKLVKGLLR  501 (501)
T ss_pred             HHHHHHHHHh--cccCCCCcEEEEeccCCCCCccceehhhcC
Confidence            5789999999  999999999999999999999999998874

>PRK07868 acyl-CoA synthetase; Validated

Probab=98.37  E-value=6.2e-07  Score=67.31  Aligned_cols=46  Identities=15%  Similarity=0.105  Sum_probs=41.5

Q ss_pred             CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77             2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME   50 (75)
Q Consensus         2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~   50 (75)
                      ++.++|+++++ +  ++.|++|+.+.+++++|+|++||++|+.|++...
T Consensus       912 ~~~~~L~~~l~-~--l~~y~vP~~i~~v~~lP~T~sGKi~r~~L~~~~l  957 (994)
T PRK07868        912 ITAADLTEALA-S--LPVGLGPDIVHVVPEIPLSATYRPTVSALRAAGI  957 (994)
T ss_pred             CCHHHHHHHHH-h--CCCCcCCeEEEEeCCCCCCccccEehHHHHhcCC
Confidence            46789999997 6  9999999999999999999999999999987643

>PLN03052 acetate--CoA ligase; Provisional

Probab=98.36  E-value=7.4e-07  Score=65.03  Aligned_cols=49  Identities=20%  Similarity=0.350  Sum_probs=40.3

Q ss_pred             CHHHHHH----HHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHH
Q psy77             3 MIQHTDE----VVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM   53 (75)
Q Consensus         3 ~~~~l~~----~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~   53 (75)
                      +.+++++    +++++  +++++.|+.|.+++++|+|++||++|+.|++.+....
T Consensus       671 ~~~~L~~~i~~~i~~~--l~~~~~p~~i~~v~~lP~T~sGKi~Rr~Lr~~~~~~~  723 (728)
T PLN03052        671 DLNELKKIFNSAIQKK--LNPLFKVSAVVIVPSFPRTASNKVMRRVLRQQLAQEL  723 (728)
T ss_pred             CHHHHHHHHHHHHHhh--cCCccCCCEEEEcCCCCCCCchHHHHHHHHHHHHhhh
Confidence            3455555    46678  8999999999999999999999999999998775543

>KOG1175|consensus

Probab=98.35  E-value=6.2e-07  Score=64.88  Aligned_cols=47  Identities=36%  Similarity=0.548  Sum_probs=43.2

Q ss_pred             HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77             4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK   52 (75)
Q Consensus         4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~   52 (75)
                      .++|..+++..  +++|+.|+.|.+++.||+|.+||+-|+.||+....+
T Consensus       557 ~kel~~~VR~~--igp~a~P~~I~~v~~LPkTrSGKimRr~lrki~~g~  603 (626)
T KOG1175|consen  557 TKELVKHVRSV--IGPYAVPRLIVFVPGLPKTRSGKIMRRALRKIASGK  603 (626)
T ss_pred             HHHHHHHHHhh--cCcccccceeEecCCCCccccchhHHHHHHHHhccC
Confidence            36788999999  999999999999999999999999999999987654

>PRK07514 malonyl-CoA synthase; Validated

Probab=98.35  E-value=1.2e-06  Score=60.17  Aligned_cols=47  Identities=34%  Similarity=0.540  Sum_probs=43.0

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      +.+++.++++++  +++|++|..+.+++++|+|++||++|+.+++.+..
T Consensus       455 ~~~~l~~~~~~~--l~~~~~p~~i~~v~~~p~t~~gK~~r~~l~~~~~~  501 (504)
T PRK07514        455 DEAAILAALKGR--LARFKQPKRVFFVDELPRNTMGKVQKNLLREQYAD  501 (504)
T ss_pred             CHHHHHHHHHhh--cccCCCCcEEEEeccCCCCCCcceeHHHHHHHHHh
Confidence            467899999999  99999999999999999999999999999887654

>PRK08316 acyl-CoA synthetase; Validated

Probab=98.34  E-value=1.3e-06  Score=60.08  Aligned_cols=48  Identities=27%  Similarity=0.432  Sum_probs=43.9

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK   52 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~   52 (75)
                      +.+++.++++.+  ++.|+.|..+.+++++|+|++||++|+.+++.+.+.
T Consensus       473 ~~~~l~~~~~~~--l~~~~~p~~i~~v~~~p~t~~gKi~r~~l~~~~~~~  520 (523)
T PRK08316        473 TEDELIAHCRAR--LAGFKVPKRVIFVDELPRNPSGKILKRELRERYAGA  520 (523)
T ss_pred             CHHHHHHHHHHh--cccCCCCcEEEEecCCCCCCccceeHHHHHHHHHhh
Confidence            467899999999  999999999999999999999999999999887653

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=98.34  E-value=6.7e-07  Score=61.36  Aligned_cols=43  Identities=28%  Similarity=0.512  Sum_probs=40.2

Q ss_pred             HHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHH
Q psy77             5 QHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQM   49 (75)
Q Consensus         5 ~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~   49 (75)
                      +++.++++.+  +++|++|+.+.+++++|+|++||++|+.+++++
T Consensus       458 ~~i~~~~~~~--l~~~~~P~~~~~v~~lP~t~~gKv~r~~l~~~~  500 (502)
T TIGR01734       458 KAIKKELKKS--LPAYMIPRKFIYRDQLPLTANGKIDRKALAEEV  500 (502)
T ss_pred             HHHHHHHhhh--ChhhcCCcEEEEccccCCCCCCcccHHHHHHhh
Confidence            5688999999  999999999999999999999999999999864

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.34  E-value=1.3e-06  Score=65.55  Aligned_cols=50  Identities=16%  Similarity=0.162  Sum_probs=43.4

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM   53 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~   53 (75)
                      +.+++.++++++. +++|++|..+.+++++|+|++||++|+.+++...+..
T Consensus      1085 ~~~~l~~~~~~~~-l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 1134 (1140)
T PRK06814       1085 TRAAFLAHAKAAG-ASELMVPAEIITIDEIPLLGTGKIDYVAVTKLAEEAA 1134 (1140)
T ss_pred             CHHHHHHHHHHcC-CCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHHhh
Confidence            5678899998632 9999999999999999999999999999998776543

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=98.34  E-value=8.5e-07  Score=60.68  Aligned_cols=44  Identities=25%  Similarity=0.454  Sum_probs=40.3

Q ss_pred             HHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77             5 QHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME   50 (75)
Q Consensus         5 ~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~   50 (75)
                      +++.++++++  ++.|++|+.+.+++++|+|++||++|+.+++++.
T Consensus       459 ~~l~~~~~~~--l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~  502 (503)
T PRK04813        459 KAIKKELKER--LMEYMIPRKFIYRDSLPLTPNGKIDRKALIEEVN  502 (503)
T ss_pred             HHHHHHHHhh--CccccCCeEEEEeccCCCCCCCCCcHHHHHHHhc
Confidence            4689999999  9999999999999999999999999999987653

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=98.33  E-value=2.1e-06  Score=59.81  Aligned_cols=53  Identities=26%  Similarity=0.514  Sum_probs=45.3

Q ss_pred             CHHHHHHHHh-hCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHHHHHH
Q psy77             3 MIQHTDEVVK-GSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMILII   57 (75)
Q Consensus         3 ~~~~l~~~~~-~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~~~~~   57 (75)
                      +.+++.+++. ..  ++.|++|..+.+++++|+|.+||++|+.|++.+.++...+.
T Consensus       489 ~~~~~~~~~~~~~--l~~~~~P~~i~~v~~iP~t~sGK~~r~~l~~~~~~~~~~~~  542 (547)
T PRK06087        489 TLEEVVAFFSRKR--VAKYKYPEHIVVIDKLPRTASGKIQKFLLRKDIMRRLTQDV  542 (547)
T ss_pred             CHHHHHHHHHhcc--ccccCCCeEEEEeccCCCCCCCcCcHHHHHHHHHHHhhhhh
Confidence            4567788775 57  99999999999999999999999999999998887765544

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=98.33  E-value=1.3e-06  Score=60.97  Aligned_cols=47  Identities=36%  Similarity=0.556  Sum_probs=43.3

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      +.+++.++++.+  ++.|+.|+.+.+++++|+|++||++|+.|++++..
T Consensus       495 ~~~~l~~~~~~~--l~~~~~p~~~~~v~~iP~t~~GK~~r~~L~~~~~~  541 (546)
T PLN02330        495 SEEDILNFVAAN--VAHYKKVRVVQFVDSIPKSLSGKIMRRLLKEKMLS  541 (546)
T ss_pred             CHHHHHHHHHHh--cccccCceEEEEeccCCCCCCcceeHHHHHHHHHh
Confidence            457899999999  99999999999999999999999999999988754

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=98.33  E-value=7.9e-07  Score=62.05  Aligned_cols=44  Identities=30%  Similarity=0.512  Sum_probs=41.1

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQ   48 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~   48 (75)
                      +.+++.++++.+  ++.|++|+.+.+++++|+|++||++|+.|++.
T Consensus       514 ~~~~l~~~~~~~--l~~~~~P~~v~~v~~lP~t~~gKv~r~~L~~~  557 (560)
T PRK08751        514 TAEDVKAHARAN--LTGYKQPRIIEFRKELPKTNVGKILRRELRDA  557 (560)
T ss_pred             CHHHHHHHHHHh--hhhccCCeEEEEhhhCCCCccccccHHHHHHh
Confidence            467899999999  99999999999999999999999999999875

>PRK13382 acyl-CoA synthetase; Provisional

Probab=98.33  E-value=7.1e-07  Score=62.32  Aligned_cols=43  Identities=26%  Similarity=0.524  Sum_probs=39.9

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSK   47 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~   47 (75)
                      +.++++++++.+  ++.|++|+.+.+++++|+|++||++|+.|++
T Consensus       494 ~~~~l~~~l~~~--l~~~~~P~~i~~v~~lP~t~~gK~~r~~L~~  536 (537)
T PRK13382        494 TPETLKQHVRDN--LANYKVPRDIVVLDELPRGATGKILRRELQA  536 (537)
T ss_pred             CHHHHHHHHHHh--ccCCCCCcEEEEeccCCCCCCCCCcHHhhCC
Confidence            467899999999  9999999999999999999999999998863

>PRK07867 acyl-CoA synthetase; Validated

Probab=98.32  E-value=1.1e-06  Score=61.38  Aligned_cols=50  Identities=24%  Similarity=0.276  Sum_probs=42.5

Q ss_pred             CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      ++.+++.++++.+..+++|++|..+.+++++|+|++||++|+.|+++..+
T Consensus       458 ~~~~~l~~~~~~~~~l~~~~~P~~i~~~~~iP~t~~GKv~r~~L~~~~~~  507 (529)
T PRK07867        458 FDPDAFAEFLAAQPDLGPKQWPSYVRVCAELPRTATFKVLKRQLSAEGVD  507 (529)
T ss_pred             CCHHHHHHHHHhhccCCcccCCeEEEEeeccCCCCCcceeHHHHHHhcCC
Confidence            45778999998621199999999999999999999999999999987643

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=98.32  E-value=1.5e-06  Score=59.95  Aligned_cols=48  Identities=29%  Similarity=0.418  Sum_probs=43.7

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK   52 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~   52 (75)
                      +.+++.+++++.  ++.|+.|..+.+++++|+|++||++|+.|++.+...
T Consensus       457 ~~~~l~~~l~~~--l~~~~~P~~i~~~~~iP~t~~GK~~r~~L~~~~~~~  504 (509)
T PRK12406        457 DEADIRAQLKAR--LAGYKVPKHIEIMAELPREDSGKIFKRRLRDPYWAN  504 (509)
T ss_pred             CHHHHHHHHHHh--cccCCCCcEEEEeccCCCCCccchhHHHHHHHHHhh
Confidence            568899999999  999999999999999999999999999998866543

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=98.32  E-value=7.7e-07  Score=61.15  Aligned_cols=43  Identities=16%  Similarity=0.352  Sum_probs=40.1

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSK   47 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~   47 (75)
                      +.+++.++++++  ++++++|..+.+++++|+|.+||++|+.|++
T Consensus       472 ~~~~l~~~l~~~--l~~~~~p~~i~~v~~iP~t~~GK~~r~~L~~  514 (515)
T TIGR03098       472 DRAALLAECRAR--LPNYMVPALIHVRQALPRNANGKIDRKALAA  514 (515)
T ss_pred             CHHHHHHHHHhh--CccccCCCEEEEeccCCCCCCCCCcHHHhcc
Confidence            567899999999  9999999999999999999999999999864

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK13391 acyl-CoA synthetase; Provisional

Probab=98.30  E-value=1.4e-06  Score=60.26  Aligned_cols=46  Identities=20%  Similarity=0.369  Sum_probs=42.0

Q ss_pred             HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      .+++.++++++  ++.|+.|..+.+++++|+|++||++|+.+++.+..
T Consensus       464 ~~~l~~~~~~~--l~~~~~P~~i~~~~~~P~t~~gKv~r~~l~~~~~~  509 (511)
T PRK13391        464 AAELIAFCRQR--LSRQKCPRSIDFEDELPRLPTGKLYKRLLRDRYWG  509 (511)
T ss_pred             HHHHHHHHHhh--cccCcCCcEEEEeecCCCCCccceeHHHHHHHhhc
Confidence            46899999999  99999999999999999999999999999987643

>PRK06164 acyl-CoA synthetase; Validated

Probab=98.30  E-value=1.5e-06  Score=60.31  Aligned_cols=49  Identities=29%  Similarity=0.379  Sum_probs=44.3

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCC---cchHHHHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSG---KIQKYVLSKQMEDKM   53 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~g---Ki~r~~l~~~~~~~~   53 (75)
                      +.+++.++|+++  +++|++|+.+.+++.+|+|++|   |++|+.|++.+....
T Consensus       483 ~~~~l~~~~~~~--l~~~~~P~~i~~~~~~P~t~~g~~~Ki~r~~L~~~~~~~~  534 (540)
T PRK06164        483 DEAGLMAACREA--LAGFKVPARVQVVEAFPVTESANGAKIQKHRLREMAQARL  534 (540)
T ss_pred             CHHHHHHHHHhh--cccCcCCcEEEEecCCCCCCCCccccccHHHHHHHHHHhh
Confidence            567899999999  9999999999999999999999   999999998766544

>PRK06178 acyl-CoA synthetase; Validated

Probab=98.30  E-value=1.7e-06  Score=60.60  Aligned_cols=46  Identities=26%  Similarity=0.456  Sum_probs=41.6

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      +.+++.++++++  ++.|++|. +.+++++|+|++||++|+.+++.+..
T Consensus       520 ~~~~l~~~~~~~--l~~~~~p~-i~~v~~iP~t~~GKv~r~~l~~~~~~  565 (567)
T PRK06178        520 TAAALQAWCREN--MAVYKVPE-IRIVDALPMTATGKVRKQDLQALAEE  565 (567)
T ss_pred             CHHHHHHHHHhc--CcccCCce-EEEeccCCCCCccceeHHHHHHHHHh
Confidence            578899999999  99999996 88899999999999999999887643

>PRK05857 acyl-CoA synthetase; Validated

Probab=98.29  E-value=1.2e-06  Score=61.29  Aligned_cols=45  Identities=20%  Similarity=0.291  Sum_probs=39.1

Q ss_pred             HHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77             6 HTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK   52 (75)
Q Consensus         6 ~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~   52 (75)
                      .+.+++++.  +++|++|+.+.+++++|+|++||++|+.|++.+.+.
T Consensus       488 ~~~~~~~~~--l~~~~~P~~v~~~~~iP~t~~GKi~r~~l~~~~~~~  532 (540)
T PRK05857        488 TIAARFRRE--SEPMARPSTIVIVTDIPRTQSGKVMRASLAAAATAD  532 (540)
T ss_pred             HHHHHHHhh--hccccCCeEEEEhhcCCCCCCcceeHHHHHHhhhhc
Confidence            344566788  999999999999999999999999999999877653

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=98.29  E-value=1.1e-06  Score=60.33  Aligned_cols=43  Identities=30%  Similarity=0.583  Sum_probs=40.0

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSK   47 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~   47 (75)
                      +.+++.++++.+  +++|+.|..+.+++++|+|++||++|..+++
T Consensus       470 ~~~~l~~~~~~~--l~~~~~p~~i~~v~~iP~t~~gK~~r~~l~~  512 (513)
T PRK07656        470 TEEELIAYCREH--LAKYKVPRSIEFLDELPKNATGKVLKRALRE  512 (513)
T ss_pred             CHHHHHHHHHhh--cccccCCCEEEEecCCCCCCccceeHHHHhc
Confidence            567899999999  9999999999999999999999999999874

>PRK07787 acyl-CoA synthetase; Validated

Probab=98.29  E-value=9.7e-07  Score=60.55  Aligned_cols=43  Identities=28%  Similarity=0.372  Sum_probs=40.3

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSK   47 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~   47 (75)
                      +.+++.++++++  +++|+.|..+.+++++|+|++||++|+.|++
T Consensus       427 ~~~~l~~~l~~~--l~~~~~P~~i~~~~~iP~~~~GKi~r~~L~~  469 (471)
T PRK07787        427 AADELIDFVAQQ--LSVHKRPREVRFVDALPRNAMGKVLKKQLLS  469 (471)
T ss_pred             CHHHHHHHHHhh--cccccCCcEEEEeccCCCCCCccccHHHhcc
Confidence            567899999999  9999999999999999999999999999875

>PRK08308 acyl-CoA synthetase; Validated

Probab=98.29  E-value=1.3e-06  Score=59.18  Aligned_cols=43  Identities=26%  Similarity=0.455  Sum_probs=39.1

Q ss_pred             CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHH
Q psy77             2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLS   46 (75)
Q Consensus         2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~   46 (75)
                      ++.++++++++++  ++.|++|..+.+++++|+|++||++|+.|+
T Consensus       366 ~~~~~l~~~l~~~--l~~~~~P~~i~~v~~iP~t~~GKi~r~~~~  408 (414)
T PRK08308        366 IDPVQLREWCIQH--LAPYQVPHEIESVTEIPKNANGKVSRKLLE  408 (414)
T ss_pred             CCHHHHHHHHHHh--CccccCCcEEEEeccCCCCCCcCeehhhhh
Confidence            3567899999999  999999999999999999999999999543

>PRK06188 acyl-CoA synthetase; Validated

Probab=98.28  E-value=2.2e-06  Score=59.35  Aligned_cols=46  Identities=26%  Similarity=0.288  Sum_probs=42.3

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME   50 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~   50 (75)
                      +.+++.++++..  ++.|+.|..+.+++++|+|++||++|..|++.+.
T Consensus       471 ~~~~l~~~~~~~--l~~~~~p~~i~~v~~~P~t~~gKi~r~~L~~~~~  516 (524)
T PRK06188        471 DAAELQAHVKER--KGSVHAPKQVDFVDSLPLTALGKPDKKALRARYW  516 (524)
T ss_pred             CHHHHHHHHHHh--cccCCCCcEEEEecCCCCCccccccHHHHHHHHH
Confidence            457899999999  9999999999999999999999999999998763

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.28  E-value=2.2e-06  Score=63.96  Aligned_cols=47  Identities=17%  Similarity=0.129  Sum_probs=41.2

Q ss_pred             CHHHHHHHHhh-CCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             3 MIQHTDEVVKG-SMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         3 ~~~~l~~~~~~-~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      +.+++.+++.+ .  +++|+.|..+.+++++|+|++||++|+.|++...+
T Consensus      1096 ~~~~l~~~~~~~~--l~~~~~P~~i~~~~~iP~t~~GKi~r~~L~~~~~~ 1143 (1146)
T PRK08633       1096 DVEELKRAIKESG--LPNLWKPSRYFKVEALPLLGSGKLDLKGLKELALA 1143 (1146)
T ss_pred             CHHHHHHHHHhcC--CCcccCCcEEEEecCcCCCCCCCCcHHHHHHHHHH
Confidence            46788888875 6  99999999999999999999999999999986543

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=98.28  E-value=2e-06  Score=58.92  Aligned_cols=47  Identities=32%  Similarity=0.630  Sum_probs=43.1

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      +..++.++++.+  ++.|..|..+.+++++|+|++||++|..+++.+.+
T Consensus       473 ~~~~l~~~l~~~--l~~~~~p~~i~~v~~~P~t~~gK~~r~~l~~~~~~  519 (521)
T PRK06187        473 DAKELRAFLRGR--LAKFKLPKRIAFVDELPRTSVGKILKRVLREQYAE  519 (521)
T ss_pred             CHHHHHHHHHHh--ccCCCCceEEEEccCCCCCCCCCeeHHHHHHHHhc
Confidence            567899999999  99999999999999999999999999999987653

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=98.28  E-value=1.3e-06  Score=61.25  Aligned_cols=44  Identities=23%  Similarity=0.384  Sum_probs=40.8

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQ   48 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~   48 (75)
                      +.+++.++++++  ++.|++|..+.+++++|+|++||++|+.|++.
T Consensus       518 ~~~~i~~~~~~~--l~~~~~P~~i~~~~~~P~t~~GK~~r~~L~~~  561 (562)
T PRK12492        518 SVEELKAYCKEN--FTGYKVPKHIVLRDSLPMTPVGKILRRELRDI  561 (562)
T ss_pred             CHHHHHHHHHHh--cccccCCcEEEEeccCCCCCCCceeHHHHHhh
Confidence            467899999999  99999999999999999999999999999864

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=98.27  E-value=6.8e-07  Score=62.25  Aligned_cols=47  Identities=28%  Similarity=0.420  Sum_probs=40.3

Q ss_pred             CHHHHHHHHhhCCCCCCC--CCccEEEEec--cCCCCCCCcchHHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHY--KIPRYVEFVA--DFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~--~~P~~i~~v~--~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      +.+++.++++++  ++.|  ++|+.+.+++  +||+|++||++|+.|++.+..
T Consensus       472 ~~~~~~~~~~~~--l~~~l~~~P~~~~~v~~~~lP~t~~GKi~r~~L~~~~~~  522 (525)
T PRK05851        472 DEAGARSEVVQR--VASECGVVPSDVVFVAPGSLPRTSSGKLRRLAVKRSLEA  522 (525)
T ss_pred             chHHHHHHHHHH--HHHHhCCCccEEEEECCCCcCcCcchHHHHHHHHHHHHh
Confidence            345677888888  8887  8999999998  899999999999999986643

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=98.27  E-value=2.5e-06  Score=58.73  Aligned_cols=46  Identities=30%  Similarity=0.551  Sum_probs=42.1

Q ss_pred             HHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77             5 QHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK   52 (75)
Q Consensus         5 ~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~   52 (75)
                      +++.++++.+  ++.|+.|..+.+++++|+|++||++|+.|++.+...
T Consensus       452 ~~i~~~~~~~--l~~~~~p~~i~~~~~lP~t~~GKi~r~~L~~~~~~~  497 (502)
T PRK08276        452 AELIAWLRGR--LAHYKCPRSIDFEDELPRTPTGKLYKRRLRDRYWEG  497 (502)
T ss_pred             HHHHHHHHhh--ccCCCCCcEEEEecCCCCCcccchhHHHHHHHHHhh
Confidence            3788999999  999999999999999999999999999999886554

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=98.26  E-value=2.5e-06  Score=59.54  Aligned_cols=47  Identities=30%  Similarity=0.434  Sum_probs=41.7

Q ss_pred             CHHHHHHHHhh-CCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             3 MIQHTDEVVKG-SMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         3 ~~~~l~~~~~~-~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      +.+++.+++.+ .  ++.|++|..+.+++++|+|.+||++|..|++.+..
T Consensus       497 ~~~~l~~~~~~~~--l~~~~~P~~i~~v~~lP~t~sgK~~r~~L~~~~~~  544 (547)
T PRK13295        497 DFEEMVEFLKAQK--VAKQYIPERLVVRDALPRTPSGKIQKFRLREMLRG  544 (547)
T ss_pred             CHHHHHHHHHhcc--CccccCCcEEEEeccCCCCCCccccHHHHHHHHhc
Confidence            45788899986 7  99999999999999999999999999999876643

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=98.26  E-value=2e-06  Score=60.11  Aligned_cols=49  Identities=27%  Similarity=0.453  Sum_probs=44.1

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM   53 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~   53 (75)
                      +.+++.+++..+  ++.|+.|..+.+++++|+|++||++|+.|+++..++.
T Consensus       509 ~~~~l~~~l~~~--l~~~~~P~~~~~~~~lP~t~~GK~~r~~l~~~~~~~~  557 (560)
T PRK08974        509 TEEELITHCRRH--LTGYKVPKLVEFRDELPKSNVGKILRRELRDEARAKV  557 (560)
T ss_pred             CHHHHHHHHHhh--cccccCCcEEEEhhhCCCCCCCcEeHHHHHHHHHhhh
Confidence            457899999999  9999999999999999999999999999998776553

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=98.26  E-value=2.9e-06  Score=59.21  Aligned_cols=48  Identities=27%  Similarity=0.407  Sum_probs=42.1

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      +.+++.++++... ++.|+.|..+.+++++|+|++||++|+.|++.+..
T Consensus       485 ~~~~l~~~~~~~~-l~~~~~P~~~~~~~~iP~t~~GKv~r~~L~~~~~~  532 (536)
T PRK10946        485 KAVQLRRFLREQG-IAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLAS  532 (536)
T ss_pred             CHHHHHHHHHhCC-ccccccCcEEEEeccCCCCCCCcccHHHHHHHHHh
Confidence            5678999998632 99999999999999999999999999999887654

>PRK13388 acyl-CoA synthetase; Provisional

Probab=98.24  E-value=2.1e-06  Score=60.08  Aligned_cols=49  Identities=24%  Similarity=0.252  Sum_probs=41.6

Q ss_pred             CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77             2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME   50 (75)
Q Consensus         2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~   50 (75)
                      ++.+++.++++.+..+++|++|..+.+++++|+|++||++|+.|++...
T Consensus       457 ~~~~~l~~~l~~~~~l~~~~~P~~~~~v~~iP~t~~GKv~R~~L~~~~~  505 (540)
T PRK13388        457 FDPDAFAAFLAAQPDLGTKAWPRYVRIAADLPSTATNKVLKRELIAQGW  505 (540)
T ss_pred             CCHHHHHHHHHhhccCCcccCCcEEEEeccCCCCCcceeeHHhHHHhcc
Confidence            3567889998752129999999999999999999999999999998754

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=98.24  E-value=1.2e-06  Score=60.45  Aligned_cols=42  Identities=31%  Similarity=0.502  Sum_probs=38.7

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLS   46 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~   46 (75)
                      +.+++..+++.+  +++|++|..+.+++++|+|++||++|+.|+
T Consensus       476 ~~~~l~~~~~~~--l~~~~~P~~~~~v~~iP~t~~gK~~r~~l~  517 (517)
T PRK08008        476 SEEEFFAFCEQN--MAKFKVPSYLEIRKDLPRNCSGKIIKKNLK  517 (517)
T ss_pred             CHHHHHHHHHhh--cccccCCcEEEEeccCCCCCccceehhhcC
Confidence            467899999999  999999999999999999999999998763

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=98.21  E-value=2.4e-06  Score=59.66  Aligned_cols=44  Identities=32%  Similarity=0.547  Sum_probs=40.6

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQ   48 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~   48 (75)
                      +.+++.+++.++  ++.|+.|..+.+++++|+|++||++|+.++++
T Consensus       512 ~~~~l~~~~~~~--l~~~~~P~~i~~v~~~P~t~~GK~~r~~L~~~  555 (557)
T PRK07059        512 TEEDVKAFCKER--LTNYKRPKFVEFRTELPKTNVGKILRRELRDG  555 (557)
T ss_pred             CHHHHHHHHHHh--cccccCCcEEEEeccCCCCcccceeHHHHHhh
Confidence            457899999999  99999999999999999999999999998764

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=98.14  E-value=2.6e-06  Score=59.37  Aligned_cols=42  Identities=26%  Similarity=0.520  Sum_probs=38.7

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLS   46 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~   46 (75)
                      +.+++.++++++  +++|++|..+.+++++|+|++||++|+.|+
T Consensus       500 ~~~~l~~~~~~~--l~~~~~P~~i~~~~~iP~t~~gK~~r~~l~  541 (541)
T TIGR03205       500 SLDELRAFLAGK--LGKHELPVAVEFVDELPRTPVGKLSRHELR  541 (541)
T ss_pred             CHHHHHHHHHhh--cccccCCcEEEEeccCCCCcccceeHhhcC
Confidence            567899999999  999999999999999999999999998763

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=98.14  E-value=2.2e-06  Score=61.00  Aligned_cols=46  Identities=26%  Similarity=0.248  Sum_probs=39.8

Q ss_pred             CHHHHHHHHhhCCCCCC-CC-CccEEEEec--cCCCCCCCcchHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAH-YK-IPRYVEFVA--DFPKTVSGKIQKYVLSKQME   50 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~-~~-~P~~i~~v~--~lP~t~~gKi~r~~l~~~~~   50 (75)
                      +.+++.++|+++  ++. |+ .|+.+.+++  +||+|++|||+|+.|++.+.
T Consensus       564 ~~~~l~~~~~~~--l~~~~~~~p~~~~~v~~~~lP~t~~GKi~r~~l~~~~~  613 (631)
T PRK07769        564 DPQPIADDIRAA--IAVRHGVTVRDVLLVPAGSIPRTSSGKIARRACRAAYL  613 (631)
T ss_pred             cHHHHHHHHHHH--HHHHcCCCccEEEEECCCccccCCCcHHHHHHHHHHHH
Confidence            567899999999  995 67 588899987  69999999999999998654

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=98.14  E-value=2.2e-06  Score=57.77  Aligned_cols=41  Identities=27%  Similarity=0.374  Sum_probs=37.4

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVL   45 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l   45 (75)
                      +..++.+++++.  ++.|++|..+.+++++|+|++||++|+.|
T Consensus       396 ~~~~l~~~l~~~--l~~~~~p~~i~~~~~iP~t~~GK~~r~~L  436 (436)
T TIGR01923       396 SQAKLIAYLTEK--LAKYKVPIAFEKLDELPYNASGKILRNQL  436 (436)
T ss_pred             CHHHHHHHHHHh--hhCCCCCeEEEEecCCCCCCCCceecccC
Confidence            467889999999  99999999999999999999999998754

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=98.13  E-value=3.4e-06  Score=58.59  Aligned_cols=42  Identities=33%  Similarity=0.578  Sum_probs=38.0

Q ss_pred             CHHHHHHHHhh-CCCCCCCCCccEEEEeccCCCCCCCcchHHHHH
Q psy77             3 MIQHTDEVVKG-SMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLS   46 (75)
Q Consensus         3 ~~~~l~~~~~~-~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~   46 (75)
                      +..++.+++++ +  ++.|+.|..+.+++++|+|++||++|+.|+
T Consensus       485 ~~~~l~~~l~~~~--l~~~~~P~~i~~v~~iP~t~sGKv~r~~L~  527 (527)
T TIGR02275       485 KAAQLRRFLRERG--LAEYKLPDRVEFIDSLPLTAVGKIDKKALR  527 (527)
T ss_pred             CHHHHHHHHHhCC--CccccCCCEEEEeccCCCCCccceeHHhcC
Confidence            56789999987 6  999999999999999999999999998763

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=98.12  E-value=3.1e-06  Score=58.93  Aligned_cols=42  Identities=33%  Similarity=0.438  Sum_probs=38.5

Q ss_pred             CHHHHHHHHhh-CCCCCCCCCccEEEEeccCCCCCCCcchHHHHH
Q psy77             3 MIQHTDEVVKG-SMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLS   46 (75)
Q Consensus         3 ~~~~l~~~~~~-~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~   46 (75)
                      +.+++.++++. +  ++.|++|..+.+++++|+|++||++|+.|+
T Consensus       495 ~~~~l~~~~~~~~--l~~~~~P~~i~~v~~iP~t~~gKv~r~~L~  537 (538)
T TIGR03208       495 DFAAMVAFLKAQK--VALQYIPERLEVVDALPATPAGKIQKFRLR  537 (538)
T ss_pred             CHHHHHHHHHhcc--hhhccCCcEEEEeccCCCCCccccchHhhc
Confidence            56789999985 7  999999999999999999999999999875

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK08162 acyl-CoA synthetase; Validated

Probab=98.08  E-value=1e-05  Score=56.29  Aligned_cols=48  Identities=33%  Similarity=0.544  Sum_probs=41.8

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM   53 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~   53 (75)
                      +.+++.++++..  +++|++|+.+.+ .++|+|++||++|+.|++++....
T Consensus       494 ~~~~l~~~~~~~--l~~~~~P~~~~~-~~iP~t~~gK~~r~~l~~~~~~l~  541 (545)
T PRK08162        494 TEEEIIAHCREH--LAGFKVPKAVVF-GELPKTSTGKIQKFVLREQAKSLK  541 (545)
T ss_pred             CHHHHHHHHHHh--cccccCCcEEEe-cccCCCCCcCCcHHHHHHHHhhhh
Confidence            567899999999  999999999875 689999999999999998765543

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=98.04  E-value=4.8e-06  Score=59.13  Aligned_cols=46  Identities=17%  Similarity=0.258  Sum_probs=39.2

Q ss_pred             CHHHHHHHHhhCCCCC-CCCC-ccEEEEec--cCCCCCCCcchHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIA-HYKI-PRYVEFVA--DFPKTVSGKIQKYVLSKQME   50 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~-~~~~-P~~i~~v~--~lP~t~~gKi~r~~l~~~~~   50 (75)
                      +.+++.+++++.  +. .|++ |+.+.+++  +||+|++||++|+.|++.+.
T Consensus       556 ~~~~l~~~~~~~--l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~L~~~~~  605 (612)
T PRK12476        556 DPAPAIDAIRAA--VSRRHGLAVADVRLVPAGAIPRTTSGKLARRACRAQYL  605 (612)
T ss_pred             cHHHHHHHHHHH--HHHhhCCcceEEEEECCCCcCcCCchHHHHHHHHHHHH
Confidence            457888999998  88 5887 68888887  59999999999999998754

>PRK13383 acyl-CoA synthetase; Provisional

Probab=98.03  E-value=8.7e-06  Score=56.44  Aligned_cols=42  Identities=19%  Similarity=0.451  Sum_probs=38.7

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLS   46 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~   46 (75)
                      +.+++..+++++  ++.|+.|..+.+++++|+|++||++|+.|+
T Consensus       474 ~~~~l~~~~~~~--l~~~~~p~~i~~v~~iP~t~~gKi~r~~L~  515 (516)
T PRK13383        474 DAAQLRDYLKDR--VSRFEQPRDINIVSSIPRNPTGKVLRKELP  515 (516)
T ss_pred             CHHHHHHHHHHh--cccCCCCcEEEEeCCCCCCCCCcCcHHHhC
Confidence            457899999999  999999999999999999999999998874

>PLN02479 acetate-CoA ligase

Probab=97.97  E-value=1.6e-05  Score=55.89  Aligned_cols=44  Identities=32%  Similarity=0.533  Sum_probs=39.0

Q ss_pred             HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77             4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME   50 (75)
Q Consensus         4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~   50 (75)
                      .+++.++++.+  +++|+.|+.+.+ +++|+|++||++|+.|++.+.
T Consensus       514 ~~~l~~~~~~~--l~~~~~P~~~~~-~~iP~t~~gKv~r~~L~~~~~  557 (567)
T PLN02479        514 AEDIMKFCRER--LPAYWVPKSVVF-GPLPKTATGKIQKHVLRAKAK  557 (567)
T ss_pred             HHHHHHHHHhh--cccccCCceEEe-ccCCCCCccCeeHHHHHHHHH
Confidence            46789999999  999999999877 679999999999999987643

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=97.95  E-value=7.5e-06  Score=56.52  Aligned_cols=42  Identities=45%  Similarity=0.764  Sum_probs=38.7

Q ss_pred             HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHH
Q psy77             4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSK   47 (75)
Q Consensus         4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~   47 (75)
                      .+++.++++.+  +++|+.|..+.+++++|+|++||++|+.+++
T Consensus       466 ~~~i~~~~~~~--l~~~~~p~~i~~~~~iP~t~~gKi~r~~l~~  507 (508)
T TIGR02262       466 ETELKEHVKDR--LAPYKYPRWIVFVDDLPKTATGKIQRFKLRE  507 (508)
T ss_pred             HHHHHHHHHHh--cccCCCCceEEEecCCCCCCCCcEehhhccC
Confidence            56789999999  9999999999999999999999999988764

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=97.91  E-value=1.7e-05  Score=54.40  Aligned_cols=36  Identities=17%  Similarity=0.253  Sum_probs=33.4

Q ss_pred             HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcch
Q psy77             4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQ   41 (75)
Q Consensus         4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~   41 (75)
                      .+++.++++++  ++.|+.|+.+.+++++|+|++||++
T Consensus       351 ~~~l~~~~~~~--L~~~~~P~~i~~~~~lP~t~~GKi~  386 (386)
T TIGR02372       351 EIELRATAARH--LPAPARPDRFRFGTELPRTGAGKLA  386 (386)
T ss_pred             HHHHHHHHHHh--CCCCCCCcEEEEcccCCCCCCCCcC
Confidence            35889999999  9999999999999999999999974

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>PRK09274 peptide synthase; Provisional

Probab=97.85  E-value=2e-05  Score=55.00  Aligned_cols=46  Identities=13%  Similarity=-0.009  Sum_probs=36.2

Q ss_pred             HHHHHHHHhhCCCCCCC---CCccEEEEeccCCCC--CCCcchHHHHHHHHHH
Q psy77             4 IQHTDEVVKGSMVIAHY---KIPRYVEFVADFPKT--VSGKIQKYVLSKQMED   51 (75)
Q Consensus         4 ~~~l~~~~~~~~~l~~~---~~P~~i~~v~~lP~t--~~gKi~r~~l~~~~~~   51 (75)
                      .+++.++++..  +..+   +.|+.+.++++||+|  ++||++|+.|++.+..
T Consensus       498 ~~~l~~~l~~~--l~~~~~~~~~~~~~~~~~lP~t~~~~GKi~r~~L~~~~~~  548 (552)
T PRK09274        498 KSALYQELRAL--AAAHPHTAGIERFLIHPSFPVDIRHNAKIFREKLAVWAAK  548 (552)
T ss_pred             hHHHhhhhHHH--HHhcCCCcceeEEeccCCCCccccccccccHHHHHHHHHH
Confidence            44566677666  5554   577889999999999  7999999999987654

>KOG1178|consensus

Probab=97.62  E-value=4.8e-05  Score=57.87  Aligned_cols=42  Identities=26%  Similarity=0.402  Sum_probs=39.1

Q ss_pred             HHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHH
Q psy77             5 QHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQ   48 (75)
Q Consensus         5 ~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~   48 (75)
                      ..|+.|+..+  ++.|++|..++.++.+|.|++||+|++.+...
T Consensus       535 ~~i~~~l~~~--La~y~vPs~~V~l~~vPl~~~GKvDkkaL~~~  576 (1032)
T KOG1178|consen  535 RDIRNYLKKE--LASYMLPSLVVPLAKVPLNPNGKVDKKALLEY  576 (1032)
T ss_pred             HHHHHhhccc--ccceecceEEEEhhhCCcCCCCCcChhhhhhh
Confidence            5689999999  99999999999999999999999999999773

>PRK09192 acyl-CoA synthetase; Validated

Probab=97.49  E-value=0.00012  Score=51.68  Aligned_cols=47  Identities=19%  Similarity=0.285  Sum_probs=39.3

Q ss_pred             CHHHHHHHHhhCCCCC-CCCCccEEEEec--cCCCCCCCcchHHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIA-HYKIPRYVEFVA--DFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~-~~~~P~~i~~v~--~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      +.+++.+++++.  +. .|+.|..+.++.  ++|+|++||++|+.+++.+..
T Consensus       517 ~~~~l~~~~~~~--l~~~~~~~~~i~~~~~~~lP~t~~GKv~R~~l~~~~~~  566 (579)
T PRK09192        517 RRGQLIHALAAL--VRSEFGVEAAVELVPPHSLPRTSSGKLSRAKAKKRYLS  566 (579)
T ss_pred             HHHHHHHHHHHH--HHHHhCCCceEEEeCCCCcCCCCCcchhHHHHHHHHHc
Confidence            346788999988  74 688999888885  899999999999999887654

>PLN02736 long-chain acyl-CoA synthetase

Probab=97.32  E-value=0.00068  Score=48.72  Aligned_cols=38  Identities=11%  Similarity=0.116  Sum_probs=33.9

Q ss_pred             CCCCCCccEEEEeccCC------CCCCCcchHHHHHHHHHHHHH
Q psy77            17 IAHYKIPRYVEFVADFP------KTVSGKIQKYVLSKQMEDKMI   54 (75)
Q Consensus        17 l~~~~~P~~i~~v~~lP------~t~~gKi~r~~l~~~~~~~~~   54 (75)
                      |+.|++|+.+.++++.+      +|++||+.|+.+++.+...++
T Consensus       601 l~~~~~~~~~~~~~~~~~~~~~~lT~~~Ki~R~~i~~~~~~~i~  644 (651)
T PLN02736        601 LRGFEFAKAVTLVPEPFTVENGLLTPTFKVKRPQAKAYFAKAIS  644 (651)
T ss_pred             CCcceeeeEEEEeCCCCcCCCCcCChhhhhhHHHHHHHHHHHHH
Confidence            99999999999999876      699999999999998766554

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=97.00  E-value=0.00062  Score=47.52  Aligned_cols=42  Identities=24%  Similarity=0.315  Sum_probs=33.3

Q ss_pred             HHHHHHhhCCCCCCC--CCccEEEEec--cCCCCCCCcchHHHHHHHH
Q psy77             6 HTDEVVKGSMVIAHY--KIPRYVEFVA--DFPKTVSGKIQKYVLSKQM   49 (75)
Q Consensus         6 ~l~~~~~~~~~l~~~--~~P~~i~~v~--~lP~t~~gKi~r~~l~~~~   49 (75)
                      ++.+++++.  +..+  ..|..+.+++  ++|+|++||+.|+.+++.+
T Consensus       498 ~l~~~~~~~--l~~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~l~~~~  543 (545)
T PRK07768        498 RIRHQVAHE--VVAEVGVRPRNVVVLGPGSIPKTPSGKLRRANAAELV  543 (545)
T ss_pred             HHHHHHHHH--HHHHhCCCccEEEEeCCCcCCCCCchhHHHHHHHHhc
Confidence            456666666  5443  5888888886  8999999999999999865

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=96.76  E-value=0.0013  Score=46.93  Aligned_cols=50  Identities=8%  Similarity=0.064  Sum_probs=37.8

Q ss_pred             CHHHHHHHHhhCCCCCCCC--------CccEEEEeccCCCCCCCcch------HHHHHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYK--------IPRYVEFVADFPKTVSGKIQ------KYVLSKQMEDKMI   54 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~--------~P~~i~~v~~lP~t~~gKi~------r~~l~~~~~~~~~   54 (75)
                      +.+++.+++++.  |+.|+        +|+++.+++++|++++||+.      |..+.+.+...++
T Consensus       536 ~~~~l~~~~~~~--l~~~~~~~~~~~~~p~~~~~~~~~p~~~~gk~t~~~~~~R~~~~~~y~~~i~  599 (614)
T PRK08180        536 AHPAVRAAFRER--LARLNAQATGSSTRVARALLLDEPPSLDAGEITDKGYINQRAVLARRAALVE  599 (614)
T ss_pred             cCHHHHHHHHHH--HHHHHhhccccHhheeEEEEecCCCCCccCccCccccccHHHHHHHhHHHHH
Confidence            346789999998  88888        89999999999999877654      5555555554443

>PRK05850 acyl-CoA synthetase; Validated

Probab=96.51  E-value=0.0027  Score=44.74  Aligned_cols=44  Identities=25%  Similarity=0.276  Sum_probs=30.6

Q ss_pred             HHHHHHhhCCCCCCC--CCccEEEEec--cCCCCCCCcchHHHHHHHHHH
Q psy77             6 HTDEVVKGSMVIAHY--KIPRYVEFVA--DFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         6 ~l~~~~~~~~~l~~~--~~P~~i~~v~--~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      ++.+.+...  +..+  ..|..+.+++  .+|+|++||++|+.+++.+..
T Consensus       521 ~l~~~v~~~--l~~~~~~~~~~~~~~~~~~iP~t~~GKi~R~~l~~~~~~  568 (578)
T PRK05850        521 TVKREVTSA--ISKSHGLSVADLVLVAPGSIPITTSGKIRRAACVEQYRQ  568 (578)
T ss_pred             HHHHHHHHH--HHHHhCCCceEEEEeCCCCcCCCCCchHHHHHHHHHHHc
Confidence            445555444  4332  2566677775  799999999999999987643

>PRK12582 acyl-CoA synthetase; Provisional

Probab=95.32  E-value=0.017  Score=41.41  Aligned_cols=49  Identities=6%  Similarity=0.067  Sum_probs=34.3

Q ss_pred             HHHHHHHHhhCCCCCCCC--------CccEEEEeccCCCCCCCc------chHHHHHHHHHHHHH
Q psy77             4 IQHTDEVVKGSMVIAHYK--------IPRYVEFVADFPKTVSGK------IQKYVLSKQMEDKMI   54 (75)
Q Consensus         4 ~~~l~~~~~~~~~l~~~~--------~P~~i~~v~~lP~t~~gK------i~r~~l~~~~~~~~~   54 (75)
                      .+++.++++..  ++.++        +|+++.++++.|++.+||      +.|+.+.+.+...++
T Consensus       548 ~~~l~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~~R~~~~~~y~~~i~  610 (624)
T PRK12582        548 HPAVLAILREG--LSAHNAEAGGSSSRIARALLMTEPPSIDAGEITDKGYINQRAVLERRAALVE  610 (624)
T ss_pred             CHHHHHHHHHH--HHHHHhhcCCChhheEEEEEeCCCCCccCCcCCccccccHHHHHHHHHHHHH
Confidence            35677887777  77766        999999999988766555      445555555555443

>KOG1179|consensus

Probab=95.01  E-value=0.0075  Score=43.98  Aligned_cols=45  Identities=22%  Similarity=0.339  Sum_probs=40.7

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQM   49 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~   49 (75)
                      +.+.+-.+++..  |++|.+|..+.+.+++++|.+-|..|.+|.++.
T Consensus       567 d~~~l~~~l~~~--LP~YA~P~FlRl~~~i~~TgTFKl~K~~L~~eg  611 (649)
T KOG1179|consen  567 DLEKLYQHLREN--LPSYARPRFLRLQDEIEKTGTFKLQKTELQKEG  611 (649)
T ss_pred             hHHHHHHHHHhh--CccccchHHHHHHhhhhcccchhhHHHHHHHcc
Confidence            456788899999  999999999999999999999999999998753

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=91.09  E-value=0.81  Score=33.63  Aligned_cols=40  Identities=15%  Similarity=0.341  Sum_probs=32.7

Q ss_pred             hCCCCCCCCCccEEEEeccCC------CCCCCcchHHHHHHHHHHHHH
Q psy77            13 GSMVIAHYKIPRYVEFVADFP------KTVSGKIQKYVLSKQMEDKMI   54 (75)
Q Consensus        13 ~~~~l~~~~~P~~i~~v~~lP------~t~~gKi~r~~l~~~~~~~~~   54 (75)
                      .+  |..|++|+.|.++++-.      .|++.|+.|..+.+.+...+.
T Consensus       647 ~~--l~~~e~~~~i~l~~~~~t~~~g~lT~t~K~~R~~i~~~y~~~i~  692 (696)
T PLN02387        647 AR--LEKFEIPAKIKLLPEPWTPESGLVTAALKLKREQIRKKFKDDLK  692 (696)
T ss_pred             cC--CCCcceeeEEEEECCCCCCCCCcCChhhhhhhHHHHHHHHHHHH
Confidence            46  99999999999887532      678889999999998877654

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=90.58  E-value=0.69  Score=33.71  Aligned_cols=41  Identities=15%  Similarity=0.178  Sum_probs=33.8

Q ss_pred             CCCCCCccEEEEec-cC-----CCCCCCcchHHHHHHHHHHHHHHHH
Q psy77            17 IAHYKIPRYVEFVA-DF-----PKTVSGKIQKYVLSKQMEDKMILII   57 (75)
Q Consensus        17 l~~~~~P~~i~~v~-~l-----P~t~~gKi~r~~l~~~~~~~~~~~~   57 (75)
                      +..|..++.+.+.+ .+     .+|+++|+.|..+.+.+...+..-.
T Consensus       606 l~~~e~i~~~~l~~~~ft~~ng~lT~t~K~~R~~i~~~y~~~I~~lY  652 (660)
T PLN02861        606 LRGFEMLKAIHLEPNPFDIERDLITPTFKLKRPQLLKYYKDCIDQLY  652 (660)
T ss_pred             CCCcceeeEEEEeCCCCCcccCcCCHHHhhhHHHHHHHHHHHHHHHH
Confidence            88999999988855 46     7999999999999998887665443

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=89.37  E-value=1.5  Score=32.04  Aligned_cols=40  Identities=15%  Similarity=0.089  Sum_probs=32.8

Q ss_pred             CCCCCCccEEEEecc-C-----CCCCCCcchHHHHHHHHHHHHHHH
Q psy77            17 IAHYKIPRYVEFVAD-F-----PKTVSGKIQKYVLSKQMEDKMILI   56 (75)
Q Consensus        17 l~~~~~P~~i~~v~~-l-----P~t~~gKi~r~~l~~~~~~~~~~~   56 (75)
                      |+.|.+++.+.+.++ +     ..|+++|+.|..+.+.+...++.-
T Consensus       606 l~~~e~i~~~~l~~~~~~~~~g~lT~t~K~~R~~i~~~y~~~i~~l  651 (660)
T PLN02430        606 LRGFEYIKGVILETKPFDVERDLVTATLKKRRNNLLKYYQVEIDEM  651 (660)
T ss_pred             CCCceeeeEEEEECCCCCCcCCcCChhhhhhhHHHHHHHHHHHHHH
Confidence            999999999888653 2     489999999999998887766543

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=89.15  E-value=1.3  Score=32.46  Aligned_cols=38  Identities=21%  Similarity=0.275  Sum_probs=31.0

Q ss_pred             CCCCCCccEEEEecc------CCCCCCCcchHHHHHHHHHHHHH
Q psy77            17 IAHYKIPRYVEFVAD------FPKTVSGKIQKYVLSKQMEDKMI   54 (75)
Q Consensus        17 l~~~~~P~~i~~v~~------lP~t~~gKi~r~~l~~~~~~~~~   54 (75)
                      +.+|..|+.+.++++      --.|+++|+.|+.+.+.+...++
T Consensus       651 l~~~e~i~~~~~~~~~f~~~~g~lT~t~K~~R~~i~~~y~~~i~  694 (700)
T PTZ00216        651 RKSFEIVRHVRVLSDEWTPENGVLTAAMKLKRRVIDERYADLIK  694 (700)
T ss_pred             CCCceeEeEEEEECCCCCCCCCCCChhhccchHHHHHHHHHHHH
Confidence            889999999888743      23699999999999988876554

>PLN02614 long-chain acyl-CoA synthetase

Probab=87.99  E-value=1.5  Score=32.08  Aligned_cols=43  Identities=14%  Similarity=0.077  Sum_probs=34.5

Q ss_pred             hCCCCCCCCCccEEEEecc-C-----CCCCCCcchHHHHHHHHHHHHHHHH
Q psy77            13 GSMVIAHYKIPRYVEFVAD-F-----PKTVSGKIQKYVLSKQMEDKMILII   57 (75)
Q Consensus        13 ~~~~l~~~~~P~~i~~v~~-l-----P~t~~gKi~r~~l~~~~~~~~~~~~   57 (75)
                      ..  |+.|.+++.+.+.+. +     -.|+++|+.|..+.+.+...++.-.
T Consensus       607 ~~--l~~~e~i~~~~l~~~~f~~~ng~lTpt~K~kR~~i~~~y~~~i~~ly  655 (666)
T PLN02614        607 KK--MKGFEIIKAIHLDPVPFDMERDLLTPTFKKKRPQLLKYYQSVIDEMY  655 (666)
T ss_pred             cC--CCCcceeeEEEEeCCCCCCcCCcCCHhhhhhHHHHHHHHHHHHHHHH
Confidence            45  999999999888763 3     3899999999999998877665443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	75
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		2e-04
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		2e-04
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		4e-04
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		5e-04
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		5e-04
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		8e-04

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 16  VIAHYKIPRYVEFVADFPKTVSGKIQK 42
           V A YK PR +EFV + PKTV+GKIQ+
Sbjct: 527 VTAPYKYPRKIEFVLNLPKTVTGKIQR 553

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 16  VIAHYKIPRYVEFVADFPKTVSGKIQK 42
           V A YK PR +EFV + PKTV+GKIQ+
Sbjct: 527 VTAPYKYPRKIEFVLNLPKTVTGKIQR 553

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 16  VIAHYKIPRYVEFVADFPKTVSGKIQK 42
           V A YK PR +EFV + PKT+SGKI++
Sbjct: 544 VTAPYKYPRIIEFVPELPKTISGKIRR 570

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMI 54
           +A YKIP  VEFV  FP+T  GK+ K  L + + +K++
Sbjct: 497 LAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLL 534

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMI 54
           +A YKIP  VEFV  FP+T  GK+ K  L + + +K++
Sbjct: 497 LAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLL 534

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQ 48
           +A +K PR + FV D PKT +GKIQ++ L +Q
Sbjct: 498 LAPHKYPRDIVFVDDLPKTATGKIQRFKLREQ 529

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	75
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	2e-15
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	2e-15
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	5e-15
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	2e-14
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	2e-12
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	4e-12
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	7e-12
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	7e-12
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	1e-11
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	2e-10
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	4e-10
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	7e-10
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	2e-09
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	7e-09
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	2e-07
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	8e-07
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	4e-06
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	9e-06

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score = 67.9 bits (167), Expect = 2e-15
 Identities = 17/37 (45%), Positives = 24/37 (64%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM 53
           +A YKIP  VEFV  FP+T  GK+ K  L + + +K+
Sbjct: 497 LAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL 533

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score = 67.9 bits (167), Expect = 2e-15
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM 53
           IA YK+P  ++ +   P T  GK+ K  L   +    
Sbjct: 506 IAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTST 542

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score = 66.5 bits (163), Expect = 5e-15
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM 53
           IA +K+P  VE V   P T  GK+ K  L + +  + 
Sbjct: 500 IAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRA 536

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score = 64.9 bits (159), Expect = 2e-14
 Identities = 8/33 (24%), Positives = 16/33 (48%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQM 49
           +A +K P+    +   PK    K+ +  L +Q+
Sbjct: 470 LADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score = 59.1 bits (144), Expect = 2e-12
 Identities = 15/35 (42%), Positives = 23/35 (65%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51
           +A +K+P+ V FV D P+   GK+QK VL +  +D
Sbjct: 466 LAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKD 500

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score = 58.3 bits (142), Expect = 4e-12
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK 52
           +A YK+P++ E V   P T +GK+Q+  L ++    
Sbjct: 463 LAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHH 498

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score = 57.6 bits (140), Expect = 7e-12
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQ 48
           +A +K PR + FV D PKT +GKIQ++ L +Q
Sbjct: 498 LAPHKYPRDIVFVDDLPKTATGKIQRFKLREQ 529

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score = 57.6 bits (140), Expect = 7e-12
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
           IA YK P++V FV   PK   G I +  +
Sbjct: 467 IARYKKPKHVVFVEALPKDAKGAIDRAAV 495

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score = 57.2 bits (139), Expect = 1e-11
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
           +A YK+P+ V F    P+  +GKI K VL
Sbjct: 479 LARYKLPKKVIFAEAIPRNPTGKILKTVL 507

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score = 53.4 bits (129), Expect = 2e-10
 Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 1/35 (2%)

Query: 16  VIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME 50
           V A YK PR +EFV + PKTV+GKIQ+  L +  E
Sbjct: 527 VTAPYKYPRKIEFVLNLPKTVTGKIQRAKL-RDKE 560

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score = 52.6 bits (127), Expect = 4e-10
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
           +A +K PR V ++   P+   GKI K  L
Sbjct: 474 LAPHKRPRVVRYLDAVPRNDMGKIMKRAL 502

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score = 51.7 bits (125), Expect = 7e-10
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51
            A +++P    F  + P+T +GK  K  L +Q ++
Sbjct: 502 FAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKN 536

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score = 51.1 bits (123), Expect = 2e-09
 Identities = 14/36 (38%), Positives = 23/36 (63%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK 52
           I+ YK  R VEFV + P+T SGK+ + +L ++  + 
Sbjct: 508 ISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEG 543

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score = 49.1 bits (118), Expect = 7e-09
 Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 1/35 (2%)

Query: 16  VIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME 50
           V A YK PR +EFV + PKT+SGKI++  + +  +
Sbjct: 544 VTAPYKYPRIIEFVPELPKTISGKIRRVEI-RDKD 577

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score = 44.9 bits (107), Expect = 2e-07
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQ 48
           +  YK  + V F+   PK  SGKI +  L ++
Sbjct: 501 VIFYKRIKRVFFIEAIPKAPSGKILRKNLKEK 532

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score = 43.5 bits (103), Expect = 8e-07
 Identities = 11/36 (30%), Positives = 16/36 (44%)

Query: 18  AHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM 53
             YK    V F    PK  SGKI +  L  ++ + +
Sbjct: 549 VFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGL 584

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score = 41.4 bits (98), Expect = 4e-06
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 17  IAHYKIPR-YVEFVADFPKTVSGKIQKYVLSKQMEDKMI 54
           +++ K  R  V FV + PK ++GKI    + +++  K +
Sbjct: 508 VSNAKRLRGGVRFVDEVPKGLTGKIDGRAI-REILKKPV 545

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score = 40.3 bits (95), Expect = 9e-06
 Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 17  IAHYKIPR-YVEFVADFPKTVSGKIQKYVLSKQMEDKMI 54
           +   K  R  V FV + PK ++GK+    + +++  K  
Sbjct: 506 VTTAKKLRGGVVFVDEVPKGLTGKLDARKI-REILIKAK 543

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	75
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	99.18
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	99.03
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	98.93
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	98.93
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	98.91
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	98.88
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	98.86
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	98.86
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	98.83
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	98.82
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	98.82
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	98.81
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	98.8
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	98.79
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	98.78
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	98.78
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	98.78
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	98.77
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	98.74
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	98.74
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	98.72
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	98.69
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	98.62
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	98.59
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	98.58
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	98.56
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	98.55
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	98.54
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	98.42
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	98.16
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	98.07
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	97.35
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	96.93
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	96.86
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	96.83
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	95.86
4f6l_B	508	AUSA reductase domain protein; thioester reductase	81.65

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=99.18  E-value=3.9e-12  Score=88.21  Aligned_cols=72  Identities=18%  Similarity=0.242  Sum_probs=42.6

Q ss_pred             CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhcCC
Q psy77             2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED-----KMILIIAVIHCQVQAYLSGLLDSE   75 (75)
Q Consensus         2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~   75 (75)
                      ++.++++++++++  |+.|++|+.+.+++++|+|++||++|+.|++....     ....+.+..+..+.++|+.+|+++
T Consensus       482 ~~~~~l~~~l~~~--L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~~~~~~p~~~~e~~l~~iw~~~L~~~  558 (563)
T 1amu_A          482 IPLEQLRQFSSEE--LPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPDLTFGMRVDYEAPRNEIEETLVTIWQDVLGSH  558 (563)
T ss_dssp             CCHHHHHHHHHHH--SCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCCCCC----------------------------
T ss_pred             CCHHHHHHHHHhh--CchhhCCcEEEEecccCCCCCcChhHHhcCCcccccccccccCCCCCHHHHHHHHHHHHHhhhh
Confidence            3578999999999  99999999999999999999999999999764321     123456778999999999999875

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=99.03  E-value=1.1e-10  Score=77.21  Aligned_cols=46  Identities=22%  Similarity=0.427  Sum_probs=42.0

Q ss_pred             HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      .++++++|+++  |++|++|+.+.+++++|+|++||++|+.|++.+.+
T Consensus       309 ~~~l~~~l~~~--L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e  354 (358)
T 4gs5_A          309 TERLTAEIRSR--VSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSD  354 (358)
T ss_dssp             HHHHHHHHHHH--SCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC-
T ss_pred             HHHHHHHHHhh--CCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhh
Confidence            46899999999  99999999999999999999999999999987644

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=98.93  E-value=8.6e-10  Score=75.55  Aligned_cols=49  Identities=33%  Similarity=0.473  Sum_probs=45.0

Q ss_pred             CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77             2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK   52 (75)
Q Consensus         2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~   52 (75)
                      .+.++++++++++  |+.|++|+.+.+++++|+|++||++|+.|++.+...
T Consensus       466 ~~~~~l~~~l~~~--L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~  514 (517)
T 3r44_A          466 VSEQQIVEYCGTR--LARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSAT  514 (517)
T ss_dssp             CCHHHHHHHHHHH--SCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGG
T ss_pred             CCHHHHHHHHHHh--CCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhh
Confidence            4678999999999  999999999999999999999999999999887543

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=98.93  E-value=1.3e-09  Score=76.10  Aligned_cols=70  Identities=26%  Similarity=0.378  Sum_probs=56.6

Q ss_pred             CCHHHHHHHHhh-CCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhc
Q psy77             2 LMIQHTDEVVKG-SMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMILI---IAVIHCQVQAYLSGLLD   73 (75)
Q Consensus         2 l~~~~l~~~~~~-~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~   73 (75)
                      .+.+++++++++ .  ++.|++|..+.+++++|+|++||++|+.|++.........   ....+..+.++|..+|+
T Consensus       486 ~~~~~l~~~l~~~~--lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~  559 (617)
T 3rg2_A          486 LRAVQVRRFLREQG--IAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRASAGRASIPASKAALREVILPLLD  559 (617)
T ss_dssp             CCHHHHHHHHHTTT--CCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHHHHHSSSCCCCSHHHHHHHHGGGSC
T ss_pred             CCHHHHHHHHHhCC--CccccCCcEEEEecccCCCCCCCCcHHHHHHHHhcccccccccccccHHHHHHHHHHHhc
Confidence            356789999998 7  9999999999999999999999999999998776543221   12345678888888875

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=98.91  E-value=2e-09  Score=73.39  Aligned_cols=46  Identities=22%  Similarity=0.375  Sum_probs=42.5

Q ss_pred             CCHHHHHHHHhh-CCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHH
Q psy77             2 LMIQHTDEVVKG-SMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQM   49 (75)
Q Consensus         2 l~~~~l~~~~~~-~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~   49 (75)
                      ++.+++.++|+. +  |++|++|+.+.+++++|+|++||++|+.|++.+
T Consensus       456 ~~~~~l~~~~~~~~--L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~  502 (504)
T 1t5h_X          456 LSADALDTFCRSSE--LADFKRPKRYFILDQLPKNALNKVLRRQLVQQV  502 (504)
T ss_dssp             CCHHHHHHHHHTSS--CCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHH
T ss_pred             cCHHHHHHHHhhcc--CcccccceEEEEhhhCCCCCCCCEeHHHHHHHh
Confidence            357899999998 9  999999999999999999999999999998764

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=98.88  E-value=1.4e-09  Score=74.21  Aligned_cols=48  Identities=33%  Similarity=0.580  Sum_probs=43.9

Q ss_pred             CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      .+.+++.++++++  |++|++|+.+.+++++|+|++||++|+.|++.+.+
T Consensus       453 ~~~~~l~~~l~~~--L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~  500 (503)
T 4fuq_A          453 IDEAQVLHGLDGQ--LAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKD  500 (503)
T ss_dssp             CCHHHHHHHHBTT--BCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTT
T ss_pred             CCHHHHHHHHHhh--cccCCCCCEEEEECCCCCCcccceeHHHHHHHHHH
Confidence            4578899999999  99999999999999999999999999999987643

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=98.86  E-value=1.6e-09  Score=74.40  Aligned_cols=47  Identities=23%  Similarity=0.363  Sum_probs=42.4

Q ss_pred             CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77             2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME   50 (75)
Q Consensus         2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~   50 (75)
                      .+.++++++++++  |+.|++|+.+.+++++|+|++||++|+.|++.+.
T Consensus       488 ~~~~~l~~~l~~~--l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~  534 (536)
T 3ni2_A          488 ATEDEIKQYISKQ--VIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLA  534 (536)
T ss_dssp             CCHHHHHHHHHTT--SCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC--
T ss_pred             CCHHHHHHHHHHh--ccCCccccEEEEEecCCCCCCCCeeHHHHHHHhc
Confidence            4578999999999  9999999999999999999999999999987653

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=98.86  E-value=1.1e-09  Score=74.50  Aligned_cols=48  Identities=25%  Similarity=0.386  Sum_probs=28.3

Q ss_pred             CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      .+.+++.++++++  |+.|++|+.+.+++++|+|++||++|+.|++....
T Consensus       450 ~~~~~l~~~l~~~--L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~  497 (501)
T 3ipl_A          450 ISKAQLIAYLSKH--LAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHH  497 (501)
T ss_dssp             CCHHHHHHHHHHH--SCGGGSCSEEEECSSCC------------------
T ss_pred             CCHHHHHHHHHhh--CccccCCCEEEEecccCCCCCCCEeHHHHhhcccc
Confidence            4678999999999  99999999999999999999999999999987654

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=98.83  E-value=7e-09  Score=71.35  Aligned_cols=51  Identities=33%  Similarity=0.541  Sum_probs=45.0

Q ss_pred             CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHH
Q psy77             2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM   53 (75)
Q Consensus         2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~   53 (75)
                      .+.+++++++++++ |+.|++|+.+.+++++|+|++||++|+.|++.+...+
T Consensus       483 ~~~~~l~~~l~~~~-L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i  533 (539)
T 1mdb_A          483 PKAAELKAFLRERG-LAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL  533 (539)
T ss_dssp             CCHHHHHHHHHHTT-CCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhCC-CCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHHH
Confidence            35688999999843 9999999999999999999999999999998876554

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=98.82  E-value=1.1e-09  Score=75.38  Aligned_cols=50  Identities=32%  Similarity=0.455  Sum_probs=23.2

Q ss_pred             CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHH
Q psy77             2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM   53 (75)
Q Consensus         2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~   53 (75)
                      .+.++++++++++  |+.|++|+.+.++++||+|++||++|+.|++......
T Consensus       495 ~~~~~l~~~l~~~--L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~  544 (549)
T 3g7s_A          495 VDEEDIIEWVRER--ISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEGH  544 (549)
T ss_dssp             CCHHHHHHHHHTT--CC-----CCCCEEEECC--------------------
T ss_pred             CCHHHHHHHHHHh--ccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhccc
Confidence            4678999999999  9999999999999999999999999999998776543

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=98.82  E-value=2.1e-09  Score=73.54  Aligned_cols=43  Identities=28%  Similarity=0.433  Sum_probs=28.6

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSK   47 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~   47 (75)
                      +.++++++++++  |+.|++|+.+.+++++|+|++||++|+.|++
T Consensus       462 ~~~~l~~~l~~~--L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~  504 (505)
T 3nyq_A          462 ALGTLADHVAAR--LAPHKRPRVVRYLDAVPRNDMGKIMKRALNR  504 (505)
T ss_dssp             CHHHHHHHHHHH--TCGGGSCSEEEECSCCCC-------------
T ss_pred             CHHHHHHHHHhh--CCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence            568999999999  9999999999999999999999999999975

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=98.81  E-value=5.5e-09  Score=71.32  Aligned_cols=47  Identities=19%  Similarity=0.335  Sum_probs=43.3

Q ss_pred             HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77             4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK   52 (75)
Q Consensus         4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~   52 (75)
                      .++++++++++  |+.|++|+.+.+++++|+|++||++|+.|++.....
T Consensus       458 ~~~l~~~l~~~--L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~  504 (511)
T 3e7w_A          458 TSAIKKELAAS--LPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVR  504 (511)
T ss_dssp             HHHHHHHHHHH--SCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhh--CchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhh
Confidence            36799999999  999999999999999999999999999999987654

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=98.80  E-value=2.7e-09  Score=72.79  Aligned_cols=46  Identities=22%  Similarity=0.370  Sum_probs=42.2

Q ss_pred             HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      .++++++|+++  |+.|++|+.+.+++++|+|++||++|+.|++....
T Consensus       467 ~~~l~~~l~~~--l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~  512 (521)
T 3l8c_A          467 TKAIKASVKDH--MMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNN  512 (521)
T ss_dssp             HHHHHHHSGGG--SCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC-
T ss_pred             HHHHHHHHHhh--CccccCCeEEEEecccCCCCCcCccHHHHhhhhhc
Confidence            46899999999  99999999999999999999999999999987654

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=98.79  E-value=7.1e-09  Score=70.67  Aligned_cols=47  Identities=19%  Similarity=0.361  Sum_probs=42.4

Q ss_pred             HHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHH
Q psy77             5 QHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM   53 (75)
Q Consensus         5 ~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~   53 (75)
                      ++++++++++  |+.|++|+.+.+++++|+|++||++|+.|++.+....
T Consensus       460 ~~l~~~l~~~--L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~  506 (512)
T 3fce_A          460 SAIKKELNER--LPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALE  506 (512)
T ss_dssp             HHHHHHHHTT--SCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC--
T ss_pred             HHHHHHHHhh--CchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhcc
Confidence            5799999999  9999999999999999999999999999998876543

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=98.78  E-value=5.3e-09  Score=72.15  Aligned_cols=49  Identities=22%  Similarity=0.365  Sum_probs=44.5

Q ss_pred             CCHHHHHHHHhhCCCCCCCCCcc-EEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77             2 LMIQHTDEVVKGSMVIAHYKIPR-YVEFVADFPKTVSGKIQKYVLSKQMEDK   52 (75)
Q Consensus         2 l~~~~l~~~~~~~~~l~~~~~P~-~i~~v~~lP~t~~gKi~r~~l~~~~~~~   52 (75)
                      .+.+++.++++++  |+.|+.|+ .+.+++++|+|++||++|+.|++.+...
T Consensus       495 ~~~~~l~~~~~~~--l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~  544 (548)
T 2d1s_A          495 MTEKEVMDYVASQ--VSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKP  544 (548)
T ss_dssp             CCHHHHHHHHHTT--SCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSC
T ss_pred             CCHHHHHHHHHHh--ccccccccccEEEccCCCCCCcchhHHHHHHHHHhhh
Confidence            3578999999999  99999999 9999999999999999999999876543

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=98.78  E-value=5.4e-10  Score=83.57  Aligned_cols=71  Identities=23%  Similarity=0.378  Sum_probs=57.8

Q ss_pred             CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhcC
Q psy77             2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM----ILIIAVIHCQVQAYLSGLLDS   74 (75)
Q Consensus         2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~   74 (75)
                      .+.++++++++++  |+.|++|..+.+++++|+|++||++|+.|.+......    ....+..+..++.+|+.+|+.
T Consensus       913 ~~~~~l~~~l~~~--Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~~~~~~~~~~~~p~~~~e~~l~~~~~~vL~~  987 (1304)
T 2vsq_A          913 LSAEDVKAHLKKQ--LPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQDQLAEEWIGPRNEMEETIAQIWSEVLGR  987 (1304)
T ss_dssp             SCHHHHHHHHHHH--SCGGGSCSEEEEESCCCCCSSCSSCCSCCCCCCGGGGCCCCCCCSSHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHh--ChHhhhccEEEEecccCCCCCcccCHhhcCCcchhhhcccccCCCChHHHHHHHHHHHHcCC
Confidence            3568999999999  9999999999999999999999999998865432211    123456788899999999864

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=98.78  E-value=2.4e-09  Score=75.21  Aligned_cols=67  Identities=16%  Similarity=0.259  Sum_probs=35.0

Q ss_pred             HHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhcC
Q psy77             6 HTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM---ILIIAVIHCQVQAYLSGLLDS   74 (75)
Q Consensus         6 ~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~   74 (75)
                      ++.++++++  |+.|++|+.+.+++++|+|++||++|+.|++.+....   .......+..++++|+.+|+.
T Consensus       470 ~~~~~l~~~--Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~~~~~~~~~~~~~e~~l~~iw~~vL~~  539 (620)
T 4dg8_A          470 ASPQALLRQ--LPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEPLERCASALDPDQRGCAQLWSELLGC  539 (620)
T ss_dssp             CCCHHHHHH--SCGGGSCSEEEECSSCCCC----CCHHHHHHHTCSCC------------------------
T ss_pred             HHHHHHHHh--ChhhcCCcEEEEECcCCCCcccCHhHHHHhhccccccccccCCCCHHHHHHHHHHHHHhCC
Confidence            345678889  9999999999999999999999999999987654321   233456778899999999864

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=98.77  E-value=5.7e-09  Score=72.43  Aligned_cols=47  Identities=40%  Similarity=0.568  Sum_probs=42.6

Q ss_pred             HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77             4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK   52 (75)
Q Consensus         4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~   52 (75)
                      .++++++++.+  |+.|++|+.+.+++++|+|++||++|+.|++.....
T Consensus       517 ~~~l~~~l~~~--L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~  563 (570)
T 3c5e_A          517 TKELQQHVKSV--TAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWKM  563 (570)
T ss_dssp             HHHHHHHHHHH--SCGGGSCSEEEEESCCCBCTTCCBCHHHHHHHHTC-
T ss_pred             HHHHHHHHHhh--CccccCCcEEEEeccCCCCCCcCCcHHHHHHHHHhh
Confidence            46899999999  999999999999999999999999999999876543

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=98.74  E-value=3.7e-09  Score=73.56  Aligned_cols=45  Identities=38%  Similarity=0.644  Sum_probs=24.5

Q ss_pred             HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHH
Q psy77             4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQME   50 (75)
Q Consensus         4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~   50 (75)
                      .++|.++++++  +++|++|+.+.+++++|+|++||++|+.|++...
T Consensus       534 ~~~l~~~l~~~--l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~  578 (580)
T 3etc_A          534 KNELQDHVKNV--TAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQ  578 (580)
T ss_dssp             HHHHHHHHHHH--SCGGGCCSEEEEECC-------------------
T ss_pred             HHHHHHHHHhh--CCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhh
Confidence            36899999999  9999999999999999999999999999998654

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=98.74  E-value=1.1e-09  Score=74.59  Aligned_cols=49  Identities=29%  Similarity=0.413  Sum_probs=0.0

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM   53 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~   53 (75)
                      +.++++++++++  |+.|++|+.+.++++||+|++||++|+.|++.+....
T Consensus       455 ~~~~l~~~l~~~--L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~  503 (509)
T 3ivr_A          455 AADALAEFVASL--IARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEG  503 (509)
T ss_dssp             ---------------------------------------------------
T ss_pred             CHHHHHHHHHhh--CcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhcc
Confidence            457899999999  9999999999999999999999999999998876543

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=98.72  E-value=1.3e-08  Score=71.61  Aligned_cols=47  Identities=26%  Similarity=0.388  Sum_probs=43.8

Q ss_pred             HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77             4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK   52 (75)
Q Consensus         4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~   52 (75)
                      .++|+++++++  +++|++|+.+.+++++|+|++||++|+.|++.+...
T Consensus       576 ~~~l~~~l~~~--l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~  622 (652)
T 1pg4_A          576 YAEVRNWVRKE--IGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGD  622 (652)
T ss_dssp             HHHHHHHHHHH--TCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred             HHHHHHHHHHh--CCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCC
Confidence            46899999999  999999999999999999999999999999987754

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=98.69  E-value=1.8e-08  Score=68.94  Aligned_cols=42  Identities=40%  Similarity=0.647  Sum_probs=39.3

Q ss_pred             HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHH
Q psy77             4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSK   47 (75)
Q Consensus         4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~   47 (75)
                      .++++++++++  |+.|++|+.+.+++++|+|++||++|+.|++
T Consensus       487 ~~~l~~~l~~~--L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~  528 (529)
T 2v7b_A          487 AEELKAFVKDR--LAPHKYPRDIVFVDDLPKTATGKIQRFKLRE  528 (529)
T ss_dssp             HHHHHHHHHTT--SCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred             HHHHHHHHHhh--cchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence            35799999999  9999999999999999999999999999975

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=98.62  E-value=4.1e-08  Score=69.37  Aligned_cols=47  Identities=32%  Similarity=0.512  Sum_probs=42.1

Q ss_pred             HHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77             4 IQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK   52 (75)
Q Consensus         4 ~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~   52 (75)
                      .++|+++++++  +++|++|+.|.++++||+|++||++|+.|++.+...
T Consensus       592 ~~~l~~~l~~~--L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~  638 (663)
T 1ry2_A          592 KKHLVFTVRKD--IGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE  638 (663)
T ss_dssp             HHHHHHHHHHH--TCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC--
T ss_pred             HHHHHHHHHHh--CCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCC
Confidence            46899999999  999999999999999999999999999999876543

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=98.59  E-value=5.5e-09  Score=71.93  Aligned_cols=46  Identities=13%  Similarity=0.268  Sum_probs=0.0

Q ss_pred             HHHHHHHhhCCCCCCCCCccEEEEeccCCCC-CCCcchHHHHHHHHHHH
Q psy77             5 QHTDEVVKGSMVIAHYKIPRYVEFVADFPKT-VSGKIQKYVLSKQMEDK   52 (75)
Q Consensus         5 ~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t-~~gKi~r~~l~~~~~~~   52 (75)
                      ++|+++|+++  |++|++|+.+.++++||+| ++||++|+.|++.+...
T Consensus       498 ~~l~~~~~~~--L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~~~~~  544 (562)
T 3ite_A          498 NSLRQACEQT--LPAYMVPDFIIPISFIPLRDTSAKTDAKALEHMFHTL  544 (562)
T ss_dssp             -------------------------------------------------
T ss_pred             HHHHHHHHhh--CCcccCCcEEEEeccCCCCCCCCcchHHHHHHHHhcc
Confidence            4899999999  9999999999999999998 99999999999887653

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=98.58  E-value=6.2e-09  Score=72.04  Aligned_cols=44  Identities=20%  Similarity=0.337  Sum_probs=0.0

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQ   48 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~   48 (75)
                      +.++++++|+++  |+.|++|+.+.+++++|+|++||++|+.|++.
T Consensus       525 ~~~~l~~~l~~~--l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~  568 (570)
T 4gr5_A          525 DAAELRRHVAEA--LPAYMVPVECVPVDELPRTPNGKLDRRALTGS  568 (570)
T ss_dssp             ----------------------------------------------
T ss_pred             CHHHHHHHHHhh--CccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence            457899999999  99999999999999999999999999999864

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=98.56  E-value=7.3e-09  Score=71.32  Aligned_cols=47  Identities=23%  Similarity=0.400  Sum_probs=0.0

Q ss_pred             CHHHHHHHHhh-CCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             3 MIQHTDEVVKG-SMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         3 ~~~~l~~~~~~-~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      +.+++++++++ +  |+.|++|+.+.+++++|+|++||++|+.|++.+..
T Consensus       493 ~~~~l~~~~~~~~--l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~  540 (544)
T 3o83_A          493 KAVVLRRHLMELG--IAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNT  540 (544)
T ss_dssp             --------------------------------------------------
T ss_pred             CHHHHHHHHHhCC--CCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhh
Confidence            45678888888 7  99999999999999999999999999999987654

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=98.55  E-value=3.6e-09  Score=72.79  Aligned_cols=47  Identities=23%  Similarity=0.428  Sum_probs=19.5

Q ss_pred             CHHHHHHHHhh-CCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             3 MIQHTDEVVKG-SMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         3 ~~~~l~~~~~~-~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      +.+++.++++. +  |+.|++|+.+.+++++|+|++||++|+.|++.+..
T Consensus       489 ~~~~l~~~~~~~~--L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~  536 (541)
T 1v25_A          489 TPEELNEHLLKAG--FAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKN  536 (541)
T ss_dssp             ------------C--CCTTTSCSBC--------------CCTTHHHHSTT
T ss_pred             CHHHHHHHHHhcc--CccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHH
Confidence            45688999999 8  99999999999999999999999999999986543

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=98.54  E-value=9.6e-09  Score=74.90  Aligned_cols=52  Identities=23%  Similarity=0.255  Sum_probs=0.0

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMILI   56 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~~~~   56 (75)
                      +.++++++++++  |+.|++|+.+.++++||+|++||++|+.|++.+.......
T Consensus       536 ~~~~l~~~l~~~--l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~~  587 (979)
T 3tsy_A          536 SEDDVKQFVSKQ--VVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGLGSG  587 (979)
T ss_dssp             ------------------------------------------------------
T ss_pred             CHHHHHHHHHHh--cccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhhcCCc
Confidence            457899999999  9999999999999999999999999999999876654433

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=98.42  E-value=2.7e-08  Score=68.46  Aligned_cols=50  Identities=20%  Similarity=0.246  Sum_probs=0.0

Q ss_pred             CHHHHHHHHhhCCCCCCCCCcc-EEEEeccCCCCCCCcchHHHHHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPR-YVEFVADFPKTVSGKIQKYVLSKQMEDKMI   54 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~-~i~~v~~lP~t~~gKi~r~~l~~~~~~~~~   54 (75)
                      +.+++.++++.+  +++|+.|. .+.+++++|+|++||++|+.|++.+.....
T Consensus       494 ~~~~l~~~~~~~--l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~  544 (550)
T 3rix_A          494 TEKEIVDYVASQ--VTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAKK  544 (550)
T ss_dssp             -----------------------------------------------------
T ss_pred             CHHHHHHHHHHh--cccccccCCceEEEeecCCCCCcceeHHHHHHHHHhhcc
Confidence            457899999999  99987665 699999999999999999999998765443

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=98.07  E-value=1.3e-06  Score=60.26  Aligned_cols=47  Identities=17%  Similarity=0.234  Sum_probs=39.3

Q ss_pred             CHHHHHHHHhhCCCCCC-CCCcc-EEEEe--ccCCCCCCCcchHHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAH-YKIPR-YVEFV--ADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~-~~~P~-~i~~v--~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      +.+++.++++++  ++. |+.|. .+.++  ++||+|++||++|+.|++.+..
T Consensus       517 ~~~~l~~~l~~~--l~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~  567 (590)
T 3kxw_A          517 AQDNLFNEIFEL--VYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLD  567 (590)
T ss_dssp             HHHHHHHHHHHH--HHHHHSCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH--HHHHcCCceeEEEEECCCccCcCCCcHHHHHHHHHHHHc
Confidence            356789999999  885 88886 56666  7999999999999999998754

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=97.35  E-value=4.4e-05  Score=51.09  Aligned_cols=38  Identities=16%  Similarity=0.236  Sum_probs=32.9

Q ss_pred             HHHHHHHHhhCCCCCCC-CCccEEEEe--ccCCCCCCCcchHH
Q psy77             4 IQHTDEVVKGSMVIAHY-KIPRYVEFV--ADFPKTVSGKIQKY   43 (75)
Q Consensus         4 ~~~l~~~~~~~~~l~~~-~~P~~i~~v--~~lP~t~~gKi~r~   43 (75)
                      .+++.++++++  |+.| +.|..+.++  +++|+|++||++|.
T Consensus       396 ~~~l~~~l~~~--l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~  436 (443)
T 2y4o_A          396 RAALARELQHR--IKTMVGVSSGVTVLAAGGIPATATGKARRV  436 (443)
T ss_dssp             HHHHHHHHHHH--HHHHTCCCCEEEEECTTCSCCCTTSCCCSE
T ss_pred             HHHHHHHHHHH--HHHHhCCceEEEEeCCCcccCccCCcceEE
Confidence            36789999999  9876 599988888  59999999999875

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=96.86  E-value=0.0002  Score=47.83  Aligned_cols=37  Identities=16%  Similarity=0.319  Sum_probs=32.2

Q ss_pred             HHHHHHHHhhCCCCCCC-CCccEEEEe--ccCCCCCCCcchHH
Q psy77             4 IQHTDEVVKGSMVIAHY-KIPRYVEFV--ADFPKTVSGKIQKY   43 (75)
Q Consensus         4 ~~~l~~~~~~~~~l~~~-~~P~~i~~v--~~lP~t~~gKi~r~   43 (75)
                      .+++.++++++  |+.| +.|..+.++  +++|+|+ ||++|.
T Consensus       392 ~~~l~~~l~~~--l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~  431 (437)
T 2y27_A          392 IQVAKQALAYD--IKSLIGVTAVINVLPVNGIERSV-GKARRV  431 (437)
T ss_dssp             HHHHHHHHHHH--HHHHHCCCEEEEECCTTCSCCCS-SSCCCE
T ss_pred             HHHHHHHHHHH--HHHhcCCceEEEEeCCCCccCCC-CcceEE
Confidence            46799999999  9988 599899888  5999999 999875

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=96.83  E-value=0.00018  Score=47.96  Aligned_cols=37  Identities=14%  Similarity=0.272  Sum_probs=26.6

Q ss_pred             HHHHHHHHhhCCCCCCC-CCccEEEEec--cCCCCCCCcchHH
Q psy77             4 IQHTDEVVKGSMVIAHY-KIPRYVEFVA--DFPKTVSGKIQKY   43 (75)
Q Consensus         4 ~~~l~~~~~~~~~l~~~-~~P~~i~~v~--~lP~t~~gKi~r~   43 (75)
                      .+++.+++++.  ++.+ +.|..+.+++  ++|+|+ ||++|.
T Consensus       390 ~~~l~~~l~~~--l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~  429 (436)
T 3qov_A          390 LEKIRRDIIRQ--LKDEILVTPKVKLVKKGSLPQSE-GKAVRV  429 (436)
T ss_dssp             HHHHHHHHHHH--HHHHHSSCCEEEEECTTCCC--------CE
T ss_pred             HHHHHHHHHHH--HHHhcCCceEEEEeCCCcccCcC-CcceEE
Confidence            46889999999  9999 9999999999  999999 999764

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=95.86  E-value=0.0023  Score=35.38  Aligned_cols=34  Identities=18%  Similarity=0.335  Sum_probs=18.5

Q ss_pred             HHHHHHhhCCCCCC-CCCccEEEEec--cCCCCCCCcchH
Q psy77             6 HTDEVVKGSMVIAH-YKIPRYVEFVA--DFPKTVSGKIQK   42 (75)
Q Consensus         6 ~l~~~~~~~~~l~~-~~~P~~i~~v~--~lP~t~~gKi~r   42 (75)
                      ++.+.++..  +.. +..|..+.+++  +||+| +||+.|
T Consensus        65 ~l~~~i~~~--l~~~~gv~~~v~~v~~~~lPrt-sGKi~R  101 (109)
T 3lax_A           65 ALTREITRQ--LKDEILVTPRVKLVPKGALPKS-EGKAVR  101 (109)
T ss_dssp             HHHHHHHHH--HHHHHSSCCEEEEECTTCSCCC----CCC
T ss_pred             hhHHHHHHH--HHHHhCCccceEEEcCCeecCC-CCCcch
Confidence            344445544  432 23555677774  79998 799876

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=81.65  E-value=0.29  Score=33.31  Aligned_cols=19  Identities=11%  Similarity=0.015  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHhhhcC
Q psy77            56 IIAVIHCQVQAYLSGLLDS   74 (75)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~   74 (75)
                      +...++..++++|+.+|+-
T Consensus        42 p~~~~e~~l~~~w~~~l~~   60 (508)
T 4f6l_B           42 PSNEIEQTFVDVFGEVLKQ   60 (508)
T ss_dssp             -------------------
T ss_pred             CCCHHHHHHHHHHHHHhCC
Confidence            4567788999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	75
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	8e-11
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	7e-10
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	2e-09
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	4e-09
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	7e-09
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	8e-09
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	2e-07

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score = 53.5 bits (127), Expect = 8e-11
 Identities = 17/39 (43%), Positives = 25/39 (64%)

Query: 16  VIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKMI 54
            +A YKIP  VEFV  FP+T  GK+ K  L + + +K++
Sbjct: 496 GLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLL 534

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score = 51.0 bits (121), Expect = 7e-10
 Identities = 10/35 (28%), Positives = 19/35 (54%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED 51
            A +++P    F  + P+T +GK  K  L +Q ++
Sbjct: 495 FAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKN 529

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (117), Expect = 2e-09
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK 52
           I  +  P+ +  V D PKT SGKI + +L K +  +
Sbjct: 580 IGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE 615

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score = 48.9 bits (116), Expect = 4e-09
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSK 47
           I     P  + +    PKT SGKI + +L K
Sbjct: 583 IGPLATPDVLHWTDSLPKTRSGKIMRRILRK 613

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score = 48.1 bits (113), Expect = 7e-09
 Identities = 8/33 (24%), Positives = 16/33 (48%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQM 49
           +A +K P+    +   PK    K+ +  L +Q+
Sbjct: 470 LADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score = 48.0 bits (113), Expect = 8e-09
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 17  IAHYKIPRYVEFVADFPKTVSGKIQKYVL 45
           +  Y IP Y   +   P T +GKI +  L
Sbjct: 479 LPTYMIPSYFIQLDKMPLTSNGKIDRKQL 507

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score = 44.1 bits (103), Expect = 2e-07
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 16  VIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQM 49
           V    K+   V FV + PK ++GK+    + + +
Sbjct: 503 VTTAKKLRGGVVFVDEVPKGLTGKLDARKIREIL 536

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	75
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	98.92
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	98.9
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	98.85
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	98.8
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	98.79
d1amua_	514	Phenylalanine activating domain of gramicidin synt	98.75
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	98.55

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=98.92  E-value=1.1e-09  Score=72.06  Aligned_cols=50  Identities=34%  Similarity=0.567  Sum_probs=44.3

Q ss_pred             CHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHHH
Q psy77             3 MIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDKM   53 (75)
Q Consensus         3 ~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~~   53 (75)
                      +.++++++++++. |++|++|+.+.+++++|+|++|||+|+.|++.+.+++
T Consensus       484 ~~~~l~~~l~~~~-l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~l  533 (536)
T d1mdba_         484 KAAELKAFLRERG-LAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKL  533 (536)
T ss_dssp             CHHHHHHHHHHTT-CCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcC-CCcCcCccEEEEECCCCcCCCcCccHHHHHHHHHHHH
Confidence            5688999998743 8999999999999999999999999999999886543

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=98.90  E-value=1e-09  Score=71.07  Aligned_cols=46  Identities=22%  Similarity=0.375  Sum_probs=41.5

Q ss_pred             CCHHHHHHHHh-hCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHH
Q psy77             2 LMIQHTDEVVK-GSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQM   49 (75)
Q Consensus         2 l~~~~l~~~~~-~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~   49 (75)
                      .+.+++.++++ .+  |++|++|+.|.++++||+|++|||+|+.|+++.
T Consensus       456 ~~~~~l~~~~~~~~--l~~~~~P~~i~~v~~~P~t~~GKi~R~~L~~~~  502 (503)
T d3cw9a1         456 LSADALDTFCRSSE--LADFKRPKRYFILDQLPKNALNKVLRRQLVQQV  502 (503)
T ss_dssp             CCHHHHHHHHHHSS--SCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHH
T ss_pred             CCHHHHHHHHHhcC--CCCCCCccEEEEECCCCcCCCcCccHHHHHHhc
Confidence            45789999995 67  999999999999999999999999999998764

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=98.85  E-value=1.3e-09  Score=75.08  Aligned_cols=46  Identities=26%  Similarity=0.402  Sum_probs=43.0

Q ss_pred             HHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77             5 QHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK   52 (75)
Q Consensus         5 ~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~   52 (75)
                      ++|+++|+++  |++|++|+.|.++++||+|++||++|+.|++++.+.
T Consensus       573 ~~i~~~~~~~--L~~~~vP~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~  618 (643)
T d1pg4a_         573 AEVRNWVRKE--IGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGD  618 (643)
T ss_dssp             HHHHHHHHHH--TCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred             HHHHHHHHhh--CCcccCccEEEEECCCCCCCCcCccHHHHHHHhcCC
Confidence            4799999999  999999999999999999999999999999988653

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.80  E-value=2.6e-09  Score=72.82  Aligned_cols=45  Identities=33%  Similarity=0.541  Sum_probs=41.2

Q ss_pred             HHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHH
Q psy77             5 QHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMED   51 (75)
Q Consensus         5 ~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~   51 (75)
                      +++.++|+++  |++|++|+.|.++++||+|++|||+|+.||+.+.+
T Consensus       570 ~~l~~~~~~~--L~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~  614 (640)
T d1ry2a_         570 KHLVFTVRKD--IGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAG  614 (640)
T ss_dssp             HHHHHHHHHH--TCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC-
T ss_pred             HHHHHHHHhh--CCCCCCceEEEEeCCCCCCCCcCccHHHHHHHHhC
Confidence            5688899999  99999999999999999999999999999987654

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=98.79  E-value=3.6e-09  Score=69.72  Aligned_cols=49  Identities=18%  Similarity=0.297  Sum_probs=38.3

Q ss_pred             CCHHHHHHHHhhCCCCCCCC-CccEEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77             2 LMIQHTDEVVKGSMVIAHYK-IPRYVEFVADFPKTVSGKIQKYVLSKQMEDK   52 (75)
Q Consensus         2 l~~~~l~~~~~~~~~l~~~~-~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~   52 (75)
                      ++.+++.++++++  +++++ .|..+.+++++|+|++|||+|+.|++++.+.
T Consensus       490 ~~~~~l~~~~~~~--l~~~~~~p~~i~~v~~lP~t~~GKi~r~~l~~~~~~~  539 (541)
T d1lcia_         490 MTEKEIVDYVASQ--VTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKA  539 (541)
T ss_dssp             CCHHHHHHHHHHH--SCGGGSCTTEEEEESSCCC-----CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHh--CCccccCCcEEEEeCCCCcCCCcCccHHHHHHHHHHh
Confidence            4678999999999  98775 7999999999999999999999999987653

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=98.75  E-value=7.9e-10  Score=72.78  Aligned_cols=44  Identities=23%  Similarity=0.447  Sum_probs=41.0

Q ss_pred             CCHHHHHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHH
Q psy77             2 LMIQHTDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSK   47 (75)
Q Consensus         2 l~~~~l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~   47 (75)
                      .+.++++++++++  |++|++|..+.++++||+|++|||+|+.|++
T Consensus       466 ~~~~~l~~~~~~~--l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~  509 (514)
T d1amua_         466 IPLEQLRQFSSEE--LPTYMIPSYFIQLDKMPLTSNGKIDRKQLPE  509 (514)
T ss_dssp             CCHHHHHHHHHHH--SCGGGSCSEEEECSSCCBCTTSSBCGGGSCC
T ss_pred             CCHHHHHHHHHhh--CCcccCceEEEEeCCCCCCCCcChhHHhcCC
Confidence            3578999999999  9999999999999999999999999998875

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=98.55  E-value=1.6e-09  Score=71.77  Aligned_cols=44  Identities=25%  Similarity=0.523  Sum_probs=20.5

Q ss_pred             HHHHHhhCCCCCCCCCccEEEEeccCCCCCCCcchHHHHHHHHHHH
Q psy77             7 TDEVVKGSMVIAHYKIPRYVEFVADFPKTVSGKIQKYVLSKQMEDK   52 (75)
Q Consensus         7 l~~~~~~~~~l~~~~~P~~i~~v~~lP~t~~gKi~r~~l~~~~~~~   52 (75)
                      ++.+++..  |++|++|+.|.+++++|+|++|||+|+.||+++...
T Consensus       487 ~~~~~~~~--l~~~~~P~~i~~~~~lP~t~~GKi~R~~lr~~~~~~  530 (534)
T d1v25a_         487 NEHLLKAG--FAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNY  530 (534)
T ss_dssp             -------C--CCTTTSCSBC--------------CCTTHHHHSTTS
T ss_pred             HHHHHHhc--CCcCCCccEEEEECCCCCCCCccccHHHHHHHHHhh
Confidence            44568888  999999999999999999999999999999987543