Psyllid ID: psy7885

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------8
Protein Sequence
VPGRVNLIGEHIDYCRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTVDTFR
Secondary Structure (PSIPRED)
cccEEccccccccEEEEEcccEEEEEEEEccccccEEEEEEEcccEEEEEEEcccccEEEEEcccccccEEEEEccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEccccccEEEEccccEEEEcccEccccccccccEEEccEEEEEEEccccEEEEEEcccccccccEEcccccc
Coil and Loop (DISEMBL)
vpgrvnligehidycrysvpgrvnligehidycrysvcpmaLEQNILVAFKcnengdlnlyniddqkyddyhstvdtfr
Flexible Loop (DISEMBL)
vpgrvnligehidycrysvPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNlyniddqkyddyHSTVDTFR
Low Complexity Region (SEG)
VPGRVNLIGEHIDYCRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTVDTFR
Disordered region (IsUnstruct)
****VNLIGEHIDYCRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDY********
Disordered Region (DISOPRED)
*PGRVNLIGEHIDYCRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTVDTFR
Disordered Region (DISEMBL)
VPGRVNLIGEHIDYCRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTVDTFR
Disordered Region (DISPRO)
VPGRVNLIGEHIDYCRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTVDTF*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
VPGRVNLIGEHIDYCRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTVDTFR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	79	2.2.26 [Sep-21-2011]
Q68FH4	458	N-acetylgalactosamine kin	yes	N/A	0.708	0.122	0.526	3e-10
Q5XIG6	458	N-acetylgalactosamine kin	yes	N/A	0.708	0.122	0.526	5e-10
Q01415	458	N-acetylgalactosamine kin	yes	N/A	0.746	0.128	0.466	2e-09
Q5R6J8	458	N-acetylgalactosamine kin	yes	N/A	0.569	0.098	0.577	4e-09
Q9SEE5	496	Galactokinase OS=Arabidop	yes	N/A	0.594	0.094	0.541	7e-09
P09608	503	Galactokinase OS=Kluyvero	yes	N/A	0.632	0.099	0.491	2e-08
Q54DN6	501	Galactokinase OS=Dictyost	yes	N/A	0.632	0.099	0.480	2e-07
P04385	528	Galactokinase OS=Saccharo	yes	N/A	0.632	0.094	0.482	3e-07
P13045	520	Protein GAL3 OS=Saccharom	no	N/A	0.569	0.086	0.531	4e-07
O42821	504	Galactokinase OS=Candida	N/A	N/A	0.620	0.097	0.469	4e-07

>sp|Q68FH4|GALK2_MOUSE N-acetylgalactosamine kinase OS=Mus musculus GN=Galk2 PE=1 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 40/57 (70%), Gaps = 1/57 (1%)

Query: 20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTVD 76
          PGRVN+IGEHIDYC YSV PMA+EQ++L+A +  +   L L N D   Y D+ +T +
Sbjct: 41 PGRVNIIGEHIDYCGYSVIPMAVEQDMLIAVEPVKTHTLQLANTDPL-YPDFSTTAN 96

Acts on GalNAc. Also acts as a galactokinase when galactose is present at high concentrations.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 1EC: 5EC: 7

>sp|Q5XIG6|GALK2_RAT N-acetylgalactosamine kinase OS=Rattus norvegicus GN=Galk2 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 1/57 (1%)

Query: 20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTVD 76
          PGRVN+IGEHIDYC YSV PMA+EQ++L+A    +   L L N D   Y D+ +T +
Sbjct: 41 PGRVNIIGEHIDYCGYSVLPMAVEQDMLIAVGPVKTQTLQLANTDPL-YPDFSTTAN 96

Acts on GalNAc. Also acts as a galactokinase when galactose is present at high concentrations.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 7

>sp|Q01415|GALK2_HUMAN N-acetylgalactosamine kinase OS=Homo sapiens GN=GALK2 PE=1 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTVDTFR 79
          PGRVN+IGEHIDYC YSV PMA+EQ++L+A +  +   L L N +   Y D+ ++ +  +
Sbjct: 41 PGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKTYALQLANTNPL-YPDFSTSANNIQ 99

Acts on GalNAc. Also acts as a galactokinase when galactose is present at high concentrations. May be involved in a salvage pathway for the reutilization of free GalNAc derived from the degradation of complex carbohydrates.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 7

>sp|Q5R6J8|GALK2_PONAB N-acetylgalactosamine kinase OS=Pongo abelii GN=GALK2 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 34/45 (75%)

Query: 20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNID 64
          PGRVN+IGEHIDYC YSV PMA+EQ++L+A +  +   L L N +
Sbjct: 41 PGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKTYTLQLANTN 85

Acts on GalNAc. Also acts as a galactokinase when galactose is present at high concentrations.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 1

EC: 5

EC: 7

>sp|Q9SEE5|GALK1_ARATH Galactokinase OS=Arabidopsis thaliana GN=GAL1 PE=1 SV=2

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/48 (54%), Positives = 35/48 (72%), Gaps = 1/48 (2%)

Query: 20  PGRVNLIGEHIDYCRYSVCPMALEQNILVAF-KCNENGDLNLYNIDDQ 66
           PGRVNLIGEHIDY  YSV PMA+ Q+ ++A  KC +   L + N++D+
Sbjct: 54  PGRVNLIGEHIDYEGYSVLPMAIRQDTIIAIRKCEDQKQLRIANVNDK 101

Sugar-1-kinase with a very high substrate specificity for the alpha-anomeric configuration of D-galacose (D-Gal). Converts also efficiently 2-deoxy-D-Gal to 2-deoxy-D-al-1-phosphate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 6

>sp|P09608|GAL1_KLULA Galactokinase OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=GAL1 PE=2 SV=2

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 7/57 (12%)

Query: 20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKC---NENGDLNLYNIDD----QKYD 69
          PGRVNLIGEHIDYC++SV PMA+E ++++A +    +EN  + L N D     +K+D
Sbjct: 41 PGRVNLIGEHIDYCQFSVLPMAIENDLMLACRLTSESENPSITLTNHDSNFAQRKFD 97

Seems bifunctional with both a galactokinase activity and the ability to induce the GAL genes.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 6

>sp|Q54DN6|GALK_DICDI Galactokinase OS=Dictyostelium discoideum GN=galK PE=3 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 36/52 (69%), Gaps = 2/52 (3%)

Query: 17  YSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNE--NGDLNLYNIDDQ 66
           +  PGRVNLIGEH+DY  Y V P ALEQ+ +VA   N+  N  +N++N +++
Sbjct: 49  FRAPGRVNLIGEHVDYSGYCVLPFALEQDTIVAVSFNKLNNDIINIHNCNEK 100

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 6

>sp|P04385|GAL1_YEAST Galactokinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAL1 PE=1 SV=4

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 6/56 (10%)

Query: 20  PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKC--NENGDLNLYNID----DQKYD 69
           PGRVNLIGEHIDYC +SV P+A++ ++L A K    +N  + L N D     +K+D
Sbjct: 51  PGRVNLIGEHIDYCDFSVLPLAIDFDMLCAVKVLNEKNPSITLINADPKFAQRKFD 106

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 6

>sp|P13045|GAL3_YEAST Protein GAL3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAL3 PE=1 SV=2

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/47 (53%), Positives = 33/47 (70%), Gaps = 2/47 (4%)

Query: 20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKC--NENGDLNLYNID 64
          PGRVNLIGEHIDYC +SV P+A++ ++L A K    +N  + L N D
Sbjct: 45 PGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVKILDEKNPSITLTNAD 91

The GAL3 regulatory function is required for rapid induction of the galactose system. At normal induction, galactose in the presence of the GAL3 protein may lead to the induction of the GAL genes, including GAL1. Then the galactokinase protein (GAL1) in the presence of galactose may reinforce the induction leading to a higher expression level. Upon depletion of galactose, the inducing activity of the galactokinase protein may decrease, after which transcription of the GAL genes, including GAL1, may decrease.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O42821|GAL1_CANPA Galactokinase OS=Candida parapsilosis GN=GAL1 PE=3 SV=1

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/49 (46%), Positives = 32/49 (65%)

Query: 20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKY 68
          PGRVNLIG+HIDY  + V PMA+E +++ A   N N  + + N D  K+
Sbjct: 45 PGRVNLIGDHIDYNYFPVLPMAIEVDVVAAVSTNNNDMIVIANTDSAKF 93

Candida parapsilosis (taxid: 5480)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
332025738	463	N-acetylgalactosamine kinase [Acromyrmex	0.721	0.123	0.603	6e-14
322785679	476	hypothetical protein SINV_05826 [Solenop	0.670	0.111	0.648	4e-13
307211466	493	N-acetylgalactosamine kinase [Harpegnath	0.721	0.115	0.586	6e-13
321476991	461	hypothetical protein DAPPUDRAFT_305622 [	0.759	0.130	0.566	3e-12
340716542	476	PREDICTED: n-acetylgalactosamine kinase-	0.582	0.096	0.695	6e-12
350404565	476	PREDICTED: N-acetylgalactosamine kinase-	0.582	0.096	0.695	6e-12
410908567	458	PREDICTED: N-acetylgalactosamine kinase-	0.772	0.133	0.587	6e-12
47220516	450	unnamed protein product [Tetraodon nigro	0.772	0.135	0.587	6e-12
332374818	459	unknown [Dendroctonus ponderosae]	0.759	0.130	0.557	7e-12
432861331	458	PREDICTED: N-acetylgalactosamine kinase-	0.645	0.111	0.673	8e-12

>gi|332025738|gb|EGI65896.1| N-acetylgalactosamine kinase [Acromyrmex echinatior]

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 47/58 (81%), Gaps = 1/58 (1%)

Query: 19  VPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTVD 76
           VPGRVNLIGEHIDYC YSVCPMA+EQ+ILVA   +++ +++L N+ D KY+D+  + D
Sbjct: 50  VPGRVNLIGEHIDYCGYSVCPMAIEQDILVAVTLSKDNEIHLTNV-DSKYEDFRCSFD 106

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322785679|gb|EFZ12324.1| hypothetical protein SINV_05826 [Solenopsis invicta]

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/54 (64%), Positives = 44/54 (81%), Gaps = 1/54 (1%)

Query: 19  VPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYH 72
           VPGRVNLIGEHIDYC YSVCPMA+EQ+ILVA   ++N ++ L N+ D KY+D+ 
Sbjct: 51  VPGRVNLIGEHIDYCGYSVCPMAIEQHILVAVTLSKNNEICLTNV-DPKYEDFQ 103

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307211466|gb|EFN87572.1| N-acetylgalactosamine kinase [Harpegnathos saltator]

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/58 (58%), Positives = 45/58 (77%), Gaps = 1/58 (1%)

Query: 19  VPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTVD 76
           VPGRVNLIGEHIDYC Y+VCPMA+EQ+ILVA   +++ ++ L N+ D KY D+  T +
Sbjct: 53  VPGRVNLIGEHIDYCGYAVCPMAIEQDILVAVALSKDNEIQLTNV-DPKYKDFRCTFE 109

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321476991|gb|EFX87950.1| hypothetical protein DAPPUDRAFT_305622 [Daphnia pulex]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/60 (56%), Positives = 43/60 (71%)

Query: 19  VPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTVDTF 78
           VPGRVNLIGEHIDYC Y+V PMA+EQ+IL+A +  E+  L L N+    Y+DY   +D F
Sbjct: 41  VPGRVNLIGEHIDYCGYAVFPMAIEQDILIAVQTREDQQLELSNLIPNIYEDYSCELDKF 100

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716542|ref|XP_003396756.1| PREDICTED: n-acetylgalactosamine kinase-like isoform 1 [Bombus terrestris] gi|340716544|ref|XP_003396757.1| PREDICTED: n-acetylgalactosamine kinase-like isoform 2 [Bombus terrestris]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/46 (69%), Positives = 38/46 (82%)

Query: 19 VPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNID 64
          VPGRVNLIGEHIDYC Y+VCPMA+EQ+ILVA   ++  D+ L NID
Sbjct: 51 VPGRVNLIGEHIDYCGYAVCPMAIEQDILVAVALSKGNDIRLTNID 96

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350404565|ref|XP_003487146.1| PREDICTED: N-acetylgalactosamine kinase-like [Bombus impatiens]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/46 (69%), Positives = 38/46 (82%)

Query: 19 VPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNID 64
          VPGRVNLIGEHIDYC Y+VCPMA+EQ+ILVA   ++  D+ L NID
Sbjct: 51 VPGRVNLIGEHIDYCGYAVCPMAIEQDILVAVALSKGNDIRLTNID 96

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|410908567|ref|XP_003967762.1| PREDICTED: N-acetylgalactosamine kinase-like [Takifugu rubripes]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/63 (58%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 9  GEHIDYCRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKY 68
          GE   +  Y+ PGRVNLIGEHIDYC YSV PMA+EQNIL A   N +G + L NI+ Q Y
Sbjct: 30 GESPQFYAYA-PGRVNLIGEHIDYCGYSVLPMAIEQNILAAVSVNRSGTITLANINPQ-Y 87

Query: 69 DDY 71
           D+
Sbjct: 88 RDF 90

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|47220516|emb|CAG05542.1| unnamed protein product [Tetraodon nigroviridis]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/63 (58%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 9  GEHIDYCRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKY 68
          GE   +  Y+ PGRVNLIGEHIDYC YSV PMA+EQNIL A   N +G + L NI+ Q Y
Sbjct: 14 GESPQFYAYA-PGRVNLIGEHIDYCGYSVLPMAIEQNILAAVSVNNSGTITLANINPQ-Y 71

Query: 69 DDY 71
           D+
Sbjct: 72 RDF 74

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|332374818|gb|AEE62550.1| unknown [Dendroctonus ponderosae]

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/61 (55%), Positives = 41/61 (67%), Gaps = 1/61 (1%)

Query: 19 VPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTVDTF 78
          VPGRVNLIGEHIDYC Y VCPMALEQ++ +A        L LYN  DQKY+ +   +D  
Sbjct: 35 VPGRVNLIGEHIDYCGYGVCPMALEQDMFLAVATTNEKRLILYNF-DQKYEGFECELDEV 93

Query: 79 R 79
          +
Sbjct: 94 K 94

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432861331|ref|XP_004069615.1| PREDICTED: N-acetylgalactosamine kinase-like [Oryzias latipes]

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/52 (67%), Positives = 39/52 (75%), Gaps = 1/52 (1%)

Query: 20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDY 71
          PGRVNLIGEHIDYC YSV PMA+EQNIL A   N +G + L NI+ Q Y DY
Sbjct: 40 PGRVNLIGEHIDYCGYSVLPMAIEQNILAAVSVNNSGMIQLANINPQ-YKDY 90

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
FB|FBgn0263199	490	Galk "Galactokinase" [Drosophi	0.772	0.124	0.483	1.1e-10
ZFIN|ZDB-GENE-041114-143	457	galk2 "galactokinase 2" [Danio	0.708	0.122	0.543	1.2e-10
UNIPROTKB|H0YK10	209	GALK2 "N-acetylgalactosamine k	0.746	0.282	0.466	8.4e-10
UNIPROTKB|H0YND3	131	GALK2 "N-acetylgalactosamine k	0.746	0.450	0.466	8.4e-10
MGI|MGI:1917226	458	Galk2 "galactokinase 2" [Mus m	0.708	0.122	0.526	9.2e-10
UNIPROTKB|F1SQG6	458	GALK2 "Uncharacterized protein	0.746	0.128	0.483	1.2e-09
UNIPROTKB|F1P1D1	461	GALK2 "Uncharacterized protein	0.746	0.127	0.5	1.2e-09
RGD|1308691	458	Galk2 "galactokinase 2" [Rattu	0.708	0.122	0.526	1.9e-09
UNIPROTKB|H0YN31	101	GALK2 "N-acetylgalactosamine k	0.544	0.425	0.604	3.6e-09
UNIPROTKB|E2RDA6	458	GALK2 "Uncharacterized protein	0.746	0.128	0.466	5.3e-09

FB|FBgn0263199 Galk "Galactokinase" [Drosophila melanogaster (taxid:7227)]

 Score = 158 (60.7 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 30/62 (48%), Positives = 42/62 (67%)

Query:    19 VPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCN-ENGDLNLYNIDDQKYDDYHSTVDT 77
             VPGRVN+IGEH+DYC YSV PMA+ Q+I +A   N  +  L L N+++ K+  Y + + T
Sbjct:    55 VPGRVNIIGEHVDYCGYSVLPMAVSQSIFLAVAKNPSDSQLQLRNLEEAKFTGYDADLKT 114

Query:    78 FR 79
              R
Sbjct:   115 LR 116

GO:0004335 "galactokinase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0006012 "galactose metabolic process" evidence=IEA

GO:0046835 "carbohydrate phosphorylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

ZFIN|ZDB-GENE-041114-143 galk2 "galactokinase 2" [Danio rerio (taxid:7955)]

 Score = 157 (60.3 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 31/57 (54%), Positives = 39/57 (68%)

Query:    20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTVD 76
             PGRVNLIGEHIDYC Y+V PMA+EQ+IL A   ++   + L N D  KY D+  + D
Sbjct:    40 PGRVNLIGEHIDYCGYAVLPMAIEQSILAAVSVSDTKTIQLTNTDP-KYKDFAVSAD 95

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0046835 "carbohydrate phosphorylation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0004335 "galactokinase activity" evidence=IEA

GO:0006012 "galactose metabolic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

UNIPROTKB|H0YK10 GALK2 "N-acetylgalactosamine kinase" [Homo sapiens (taxid:9606)]

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 28/60 (46%), Positives = 41/60 (68%)

Query:    20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTVDTFR 79
             PGRVN+IGEHIDYC YSV PMA+EQ++L+A +  +   L L N +   Y D+ ++ +  +
Sbjct:    17 PGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKTYALQLANTNPL-YPDFSTSANNIQ 75

GO:0004335 "galactokinase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006012 "galactose metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|H0YND3 GALK2 "N-acetylgalactosamine kinase" [Homo sapiens (taxid:9606)]

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 28/60 (46%), Positives = 41/60 (68%)

Query:    20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTVDTFR 79
             PGRVN+IGEHIDYC YSV PMA+EQ++L+A +  +   L L N +   Y D+ ++ +  +
Sbjct:    17 PGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKTYALQLANTNPL-YPDFSTSANNIQ 75

GO:0004335 "galactokinase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006012 "galactose metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

MGI|MGI:1917226 Galk2 "galactokinase 2" [Mus musculus (taxid:10090)]

 Score = 149 (57.5 bits), Expect = 9.2e-10, P = 9.2e-10
 Identities = 30/57 (52%), Positives = 40/57 (70%)

Query:    20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTVD 76
             PGRVN+IGEHIDYC YSV PMA+EQ++L+A +  +   L L N D   Y D+ +T +
Sbjct:    41 PGRVNIIGEHIDYCGYSVIPMAVEQDMLIAVEPVKTHTLQLANTDPL-YPDFSTTAN 96

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004335 "galactokinase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0006012 "galactose metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0033858 "N-acetylgalactosamine kinase activity" evidence=IEA

GO:0046835 "carbohydrate phosphorylation" evidence=IEA

UNIPROTKB|F1SQG6 GALK2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 148 (57.2 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 29/60 (48%), Positives = 42/60 (70%)

Query:    20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTVDTFR 79
             PGRVN+IGEHIDYC YSV PMA+EQ++L+A +  +   L L N +   Y D++++ D  +
Sbjct:    41 PGRVNIIGEHIDYCGYSVLPMAVEQDMLIAVEPVKTHTLQLANTNPL-YPDFNTSADNIQ 99

GO:0005524 "ATP binding" evidence=IEA

GO:0006012 "galactose metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004335 "galactokinase activity" evidence=IEA

UNIPROTKB|F1P1D1 GALK2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 148 (57.2 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 30/60 (50%), Positives = 43/60 (71%)

Query:    20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTVDTFR 79
             PGRVNLIGEHIDYC Y+V PMA+EQ+IL+A +  +   + L NI+   Y D+ ++V+  +
Sbjct:    44 PGRVNLIGEHIDYCGYAVLPMAIEQDILIAVEPVKTEVVQLANINSS-YLDFSTSVNNIQ 102

GO:0004335 "galactokinase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006012 "galactose metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

RGD|1308691 Galk2 "galactokinase 2" [Rattus norvegicus (taxid:10116)]

 Score = 146 (56.5 bits), Expect = 1.9e-09, P = 1.9e-09
 Identities = 30/57 (52%), Positives = 39/57 (68%)

Query:    20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTVD 76
             PGRVN+IGEHIDYC YSV PMA+EQ++L+A    +   L L N D   Y D+ +T +
Sbjct:    41 PGRVNIIGEHIDYCGYSVLPMAVEQDMLIAVGPVKTQTLQLANTDPL-YPDFSTTAN 96

GO:0004335 "galactokinase activity" evidence=IEA;ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006012 "galactose metabolic process" evidence=IEA

GO:0033858 "N-acetylgalactosamine kinase activity" evidence=IEA

UNIPROTKB|H0YN31 GALK2 "N-acetylgalactosamine kinase" [Homo sapiens (taxid:9606)]

 Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
 Identities = 26/43 (60%), Positives = 33/43 (76%)

Query:    20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYN 62
             PGRVN+IGEHIDYC YSV PMA+EQ++L+A +  +   L L N
Sbjct:    41 PGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKTYALQLAN 83

GO:0004335 "galactokinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006012 "galactose metabolic process" evidence=IEA

UNIPROTKB|E2RDA6 GALK2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 142 (55.0 bits), Expect = 5.3e-09, P = 5.3e-09
 Identities = 28/60 (46%), Positives = 41/60 (68%)

Query:    20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTVDTFR 79
             PGRVN+IGEHIDYC YSV PMA+EQ++L+A +  +   L L N +   Y D+ ++ +  +
Sbjct:    41 PGRVNIIGEHIDYCGYSVLPMAIEQDMLIAVEPVKTQTLQLANTNPL-YTDFSTSANNIQ 99

GO:0005524 "ATP binding" evidence=IEA

GO:0006012 "galactose metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004335 "galactokinase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q68FH4	GALK2_MOUSE	2, ., 7, ., 1, ., 1, 5, 7	0.5263	0.7088	0.1222	yes	N/A
Q5R6J8	GALK2_PONAB	2, ., 7, ., 1, ., 1, 5, 7	0.5777	0.5696	0.0982	yes	N/A
Q9SEE5	GALK1_ARATH	2, ., 7, ., 1, ., 6	0.5416	0.5949	0.0947	yes	N/A
Q5XIG6	GALK2_RAT	2, ., 7, ., 1, ., 1, 5, 7	0.5263	0.7088	0.1222	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.1	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	79
pfam10509	52	pfam10509, GalKase_gal_bdg, Galactokinase galactos	5e-15
PLN02521	497	PLN02521, PLN02521, galactokinase	1e-14
COG0153	390	COG0153, GalK, Galactokinase [Carbohydrate transpo	1e-11
TIGR00131	386	TIGR00131, gal_kin, galactokinase	4e-10
PRK00555	363	PRK00555, PRK00555, galactokinase; Provisional	1e-07
PTZ00290	468	PTZ00290, PTZ00290, galactokinase; Provisional	1e-06
PRK05101	382	PRK05101, PRK05101, galactokinase; Provisional	2e-06
PRK03817	351	PRK03817, PRK03817, galactokinase; Provisional	3e-06
PRK05322	387	PRK05322, PRK05322, galactokinase; Provisional	2e-05
PRK05322	387	PRK05322, PRK05322, galactokinase; Provisional	5e-05
PRK05101	382	PRK05101, PRK05101, galactokinase; Provisional	1e-04
PTZ00290	468	PTZ00290, PTZ00290, galactokinase; Provisional	2e-04
PRK03817	351	PRK03817, PRK03817, galactokinase; Provisional	3e-04
PRK00555	363	PRK00555, PRK00555, galactokinase; Provisional	7e-04

>gnl|CDD|204502 pfam10509, GalKase_gal_bdg, Galactokinase galactose-binding signature

 Score = 61.7 bits (151), Expect = 5e-15
 Identities = 18/37 (48%), Positives = 20/37 (54%)

Query: 17 YSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCN 53
           S PGRVNLIGEH DY    V P A+  +  VA    
Sbjct: 16 ASAPGRVNLIGEHTDYNGGFVLPAAINLDTYVAVSKR 52

This is the highly conserved galactokinase signature sequence which appears to be present in all galactokinases irrespective of how many other ATP binding sites, etc that they carry. The function of this domain appears to be to bind galactose, and the domain is normally at the N-terminus of the enzymes, EC:2.7.1.6. This domain is associated with the families GHMP_kinases_C, pfam08544 and GHMP_kinases_N, pfam00288. Length = 52

>gnl|CDD|215285 PLN02521, PLN02521, galactokinase

 Score = 66.3 bits (162), Expect = 1e-14
 Identities = 27/50 (54%), Positives = 35/50 (70%), Gaps = 2/50 (4%)

Query: 20  PGRVNLIGEHIDYCRYSVCPMALEQNILVAF-KCNENGDLNLYNIDDQKY 68
           PGRVNLIGEHIDY  YSV PMA+ Q+ +VA  +   +  L + N++D KY
Sbjct: 54  PGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRRAEGSKKLRIANVND-KY 102

Length = 497

>gnl|CDD|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and metabolism]

 Score = 58.1 bits (141), Expect = 1e-11
 Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 7  LIGEHIDYC----RYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYN 62
          L  EH  Y         PGRVNLIGEH DY    V P A+     VA    ++G + LY+
Sbjct: 12 LFAEHFGYVEPTVTAFAPGRVNLIGEHTDYNGGFVLPCAINYGTYVAVAKRDDGKVRLYS 71

Query: 63 ID 64
           +
Sbjct: 72 AN 73

Length = 390

>gnl|CDD|232841 TIGR00131, gal_kin, galactokinase

 Score = 53.3 bits (128), Expect = 4e-10
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNID-DQKYDDY 71
          PGRVNLIGEH DY   SV P A++   L A    ++ ++ +Y  + D K+ + 
Sbjct: 23 PGRVNLIGEHTDYNDGSVLPCAIDFGTLCAVAVRDDKNVRIYLANADNKFAER 75

Galactokinase is a member of the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase) and shares with them an amino-terminal domain probably related to ATP binding.The galactokinases found by This model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity [Energy metabolism, Sugars]. Length = 386

>gnl|CDD|179063 PRK00555, PRK00555, galactokinase; Provisional

 Score = 46.4 bits (110), Expect = 1e-07
 Identities = 19/35 (54%), Positives = 23/35 (65%)

Query: 16 RYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAF 50
          RY+ PGR+NLIGEH DY      P+AL Q  +V F
Sbjct: 4  RYAAPGRINLIGEHTDYNLGFALPIALPQRTVVTF 38

Length = 363

>gnl|CDD|240347 PTZ00290, PTZ00290, galactokinase; Provisional

 Score = 43.3 bits (102), Expect = 1e-06
 Identities = 18/31 (58%), Positives = 22/31 (70%), Gaps = 2/31 (6%)

Query: 20 PGRVNLIGEHIDYCRYSVCPMALEQ--NILV 48
          PGRVN IGEH+DY    VCP A+ +  +ILV
Sbjct: 43 PGRVNFIGEHVDYMGGYVCPAAVLEGCHILV 73

Length = 468

>gnl|CDD|179937 PRK05101, PRK05101, galactokinase; Provisional

 Score = 43.4 bits (103), Expect = 2e-06
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNID 64
          PGRVNLIGEH DY    V P A++   +++    ++  + +   D
Sbjct: 26 PGRVNLIGEHTDYNDGFVLPCAIDYQTVISCAKRDDRIVRVIAAD 70

Length = 382

>gnl|CDD|235163 PRK03817, PRK03817, galactokinase; Provisional

 Score = 42.7 bits (101), Expect = 3e-06
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 16 RYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLY 61
          +   PGRVNLIGEH DY    V P A+  N+    +  ++     Y
Sbjct: 2  KVKSPGRVNLIGEHTDYNDGYVLPFAI--NLYTFLEIEKSEKFIFY 45

Length = 351

>gnl|CDD|235407 PRK05322, PRK05322, galactokinase; Provisional

 Score = 39.8 bits (94), Expect = 2e-05
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 12/66 (18%)

Query: 20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLY------------NIDDQK 67
          PGR+NLIGEH DY    V P A+      A +  ++  + LY            ++DD  
Sbjct: 25 PGRINLIGEHTDYNGGHVFPAAITLGTYGAARKRDDKKVRLYSANFEDLGIIEFDLDDLS 84

Query: 68 YDDYHS 73
          +D    
Sbjct: 85 FDKEDD 90

Length = 387

>gnl|CDD|235407 PRK05322, PRK05322, galactokinase; Provisional

 Score = 39.1 bits (92), Expect = 5e-05
 Identities = 11/13 (84%), Positives = 12/13 (92%)

Query: 2  PGRVNLIGEHIDY 14
          PGR+NLIGEH DY
Sbjct: 25 PGRINLIGEHTDY 37

Length = 387

>gnl|CDD|179937 PRK05101, PRK05101, galactokinase; Provisional

 Score = 38.0 bits (89), Expect = 1e-04
 Identities = 12/13 (92%), Positives = 12/13 (92%)

Query: 2  PGRVNLIGEHIDY 14
          PGRVNLIGEH DY
Sbjct: 26 PGRVNLIGEHTDY 38

Length = 382

>gnl|CDD|240347 PTZ00290, PTZ00290, galactokinase; Provisional

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 18/30 (60%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 2  PGRVNLIGEHIDYCR-YSVPGRVNLIGEHI 30
          PGRVN IGEH+DY   Y  P  V L G HI
Sbjct: 43 PGRVNFIGEHVDYMGGYVCPAAV-LEGCHI 71

Length = 468

>gnl|CDD|235163 PRK03817, PRK03817, galactokinase; Provisional

 Score = 36.9 bits (86), Expect = 3e-04
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 6/41 (14%)

Query: 2  PGRVNLIGEHIDYCR-YSVPGRVNL-----IGEHIDYCRYS 36
          PGRVNLIGEH DY   Y +P  +NL     I +   +  YS
Sbjct: 6  PGRVNLIGEHTDYNDGYVLPFAINLYTFLEIEKSEKFIFYS 46

Length = 351

>gnl|CDD|179063 PRK00555, PRK00555, galactokinase; Provisional

 Score = 36.0 bits (83), Expect = 7e-04
 Identities = 11/13 (84%), Positives = 12/13 (92%)

Query: 2  PGRVNLIGEHIDY 14
          PGR+NLIGEH DY
Sbjct: 8  PGRINLIGEHTDY 20

Length = 363

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	79
PF10509	52	GalKase_gal_bdg: Galactokinase galactose-binding s	99.9
PLN02865	423	galactokinase	99.86
COG0153	390	GalK Galactokinase [Carbohydrate transport and met	99.86
PLN02521	497	galactokinase	99.81
PTZ00290	468	galactokinase; Provisional	99.77
PRK05322	387	galactokinase; Provisional	99.77
PRK00555	363	galactokinase; Provisional	99.75
PRK05101	382	galactokinase; Provisional	99.71
TIGR00131	386	gal_kin galactokinase. The galactokinases found by	99.69
KOG0631|consensus	489		99.68
TIGR00549	273	mevalon_kin mevalonate kinase. Paracoccus exhibits	99.49
PRK03817	351	galactokinase; Provisional	99.47
PRK13412	974	fkp bifunctional fucokinase/L-fucose-1-P-guanylylt	99.43
TIGR01220	358	Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-typ	99.33
PLN02677	387	mevalonate kinase	99.2
PRK03926	302	mevalonate kinase; Provisional	99.15
TIGR00154	293	ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kin	98.67
KOG1511|consensus	397		98.44
PRK00128	286	ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin	98.38
PRK02534	312	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	98.31
COG1577	307	ERG12 Mevalonate kinase [Lipid metabolism]	98.07
PTZ00298	328	mevalonate kinase; Provisional	97.22
COG2605	333	Predicted kinase related to galactokinase and meva	96.92
PRK00343	271	ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin	92.34
TIGR01219	454	Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type,	86.55

>PF10509 GalKase_gal_bdg: Galactokinase galactose-binding signature; InterPro: IPR019539 This entry represents a highly conserved galactokinase signature sequence which appears to be present in all galactokinases, irrespective of how many other ATP binding sites, etc that they carry []

Probab=99.90  E-value=1.2e-24  Score=124.52  Aligned_cols=39  Identities=46%  Similarity=0.588  Sum_probs=34.6

Q ss_pred             EEEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeC
Q psy7885          15 CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCN   53 (79)
Q Consensus        15 ~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~   53 (79)
                      .+++||||+|||||||||+||.||||||++++++++++|
T Consensus        14 ~~~~APGRvnliGeHtDy~gG~Vl~~Ai~~~~~~a~~~r   52 (52)
T PF10509_consen   14 VVASAPGRVNLIGEHTDYNGGFVLPAAIDLRTYVAVSPR   52 (52)
T ss_dssp             EEEEEEEEEEEE-TT-GGGT-EEEEEEEEEEEEEEEEEE
T ss_pred             EEEECCceEEecCcccccCCCeEEEEEeeccEEEEEEcC
Confidence            789999999999999999999999999999999999985

The function of this domain appears to be to bind galactose [], and it is normally located at the N terminus of these enzymes []. It is associated with IPR013750 from INTERPRO and IPR006204 from INTERPRO. While all enzymes in this entry posses galactokinase activity, some are annotated as N-acetylgalactosamine kinases as they also posses this enzyme activity.; PDB: 1PIE_A 1WUU_A 1S4E_D 2A2C_A 2A2D_A 2AJ4_A 2DEJ_A 2CZ9_A 2DEI_A 3V5R_A ....

>PLN02865 galactokinase

Probab=99.86  E-value=3.5e-22  Score=152.24  Aligned_cols=70  Identities=20%  Similarity=0.253  Sum_probs=59.3

Q ss_pred             hhhhhhccee--E-------EEEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEEEcCCCCcceEEe
Q psy7885           4 RVNLIGEHID--Y-------CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHS   73 (79)
Q Consensus         4 r~~~~~~~f~--y-------~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~~~~~~~~l   73 (79)
                      .++++.+.|.  |       .+++||||||||||||||+||+||||||+++|+++++++++++++++|.++++...|.+
T Consensus        11 ~~~~l~~~F~~~fg~~p~~~~~~~APGRVnlIGEHtDYngG~VLp~AI~~~~~va~~~~~~~~i~v~s~~~~~~~~~~~   89 (423)
T PLN02865         11 ELDEIRERVAAMSGRNSGEVRVVVSPYRICPLGAHIDHQGGTVSAMTINKGILLGFVPSGDPEVLLRSAQFEGEVRFRV   89 (423)
T ss_pred             HHHHHHHHHHHHhCCCcccceEEEcCcceecccccccCCCCeEEeEEeeccEEEEEEECCCCEEEEEECCCCCceEEec
Confidence            4556777777  6       36899999999999999999999999999999999999999999999988754334443

>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]

Probab=99.86  E-value=5.2e-22  Score=150.06  Aligned_cols=55  Identities=36%  Similarity=0.514  Sum_probs=51.7

Q ss_pred             EEEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEEEcCCCCcc
Q psy7885          15 CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYD   69 (79)
Q Consensus        15 ~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~~~~~   69 (79)
                      ..++|||||||||||||||||+||||||++++++++++++|..++++|.+++...
T Consensus        24 ~~~~aPGRvNLIGEHtDYn~G~VlP~Ain~~t~v~v~~r~d~~v~l~s~n~~~~~   78 (390)
T COG0153          24 VTAFAPGRVNLIGEHTDYNGGFVLPCAINYGTYVAVAKRDDGKVRLYSANFGNAG   78 (390)
T ss_pred             eEecCCceEEeeccceeccCceEEEEEeecceEEEEEEccCceEEEEeCCCcccc
Confidence            7789999999999999999999999999999999999999999999999986443

>PLN02521 galactokinase

Probab=99.81  E-value=4e-20  Score=143.15  Aligned_cols=63  Identities=44%  Similarity=0.655  Sum_probs=58.2

Q ss_pred             hhhhhhhccee--E-----EEEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCC-CcEEEEEcCC
Q psy7885           3 GRVNLIGEHID--Y-----CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNEN-GDLNLYNIDD   65 (79)
Q Consensus         3 ~r~~~~~~~f~--y-----~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d-~~v~i~s~~~   65 (79)
                      .|++++.+.|.  |     .+++|||||||||||+||+||+||||||+++++++++++++ +.+++.+.+.
T Consensus        30 ~r~~~l~~~F~~~fg~~p~~~~~APGRVnLiGEHtDy~gg~vLp~AI~~~~~v~~~~~~~~~~i~i~s~~~  100 (497)
T PLN02521         30 LRYARLKAAFVEVYGAKPDLFARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRRAEGSKKLRIANVND  100 (497)
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEECCceEEEeccceeecCCeEEEEEEcCcEEEEEEEcCCCCEEEEEECCC
Confidence            48999999998  7     77899999999999999999999999999999999999987 7899988775

>PTZ00290 galactokinase; Provisional

Probab=99.77  E-value=2.3e-19  Score=138.33  Aligned_cols=61  Identities=26%  Similarity=0.373  Sum_probs=51.3

Q ss_pred             hhhhhhccee--E-----------EEEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeC---CCCcEEEEEcC
Q psy7885           4 RVNLIGEHID--Y-----------CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCN---ENGDLNLYNID   64 (79)
Q Consensus         4 r~~~~~~~f~--y-----------~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~---~d~~v~i~s~~   64 (79)
                      +++++.+.|.  |           ++++||||||||||||||+||+||||||+++++++++++   +++++++.+..
T Consensus        14 ~~~~l~~~F~~~fG~~p~~~~~~~~~~~APGRVnLIGEHtDYngG~VLp~AId~~~~va~~~~~~~~~~~i~~~~~~   90 (468)
T PTZ00290         14 TLSTLKPIFLETFKVENDADVEWLLFTFAPGRVNFIGEHVDYMGGYVCPAAVLEGCHILVGRVKHFCDHKLRFATET   90 (468)
T ss_pred             HHHHHHHHHHHHhCCCcccccceeEEEeccceeeecccccccCCCeeeeccccCcEEEEEeecCCCCCCeEEEEECC
Confidence            4667778887  6           235999999999999999999999999999999999765   56788886544

>PRK05322 galactokinase; Provisional

Probab=99.77  E-value=6.5e-19  Score=132.21  Aligned_cols=71  Identities=25%  Similarity=0.405  Sum_probs=59.4

Q ss_pred             hhhhccee--E-----EEEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEEEcCCCCcceEEeecC
Q psy7885           6 NLIGEHID--Y-----CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTVD   76 (79)
Q Consensus         6 ~~~~~~f~--y-----~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~~~~~~~~l~l~   76 (79)
                      +++.+.|.  |     .+++|||||||+|||+||+||+|||+||++++++++++++++.+++.+.+++....++++++
T Consensus         4 ~~~~~~f~~~fg~~p~~~~~APgRv~L~GEH~d~~g~~vl~~AI~~~~~v~~~~~~~~~i~i~s~~~~~~~~~~~~~~   81 (387)
T PRK05322          4 EELKKKFAEVFGEEAEDVFFSPGRINLIGEHTDYNGGHVFPAAITLGTYGAARKRDDKKVRLYSANFEDLGIIEFDLD   81 (387)
T ss_pred             HHHHHHHHHHhCCCCceEEEcCceeEecccceeecCceeeeeeccceEEEEEEECCCCEEEEEECCCCCCceEEEecc
Confidence            45667777  6     67899999999999999999999999999999999999999999999888743333444443

>PRK00555 galactokinase; Provisional

Probab=99.75  E-value=2.2e-18  Score=128.52  Aligned_cols=53  Identities=36%  Similarity=0.565  Sum_probs=49.1

Q ss_pred             EEEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEEEcCCCC
Q psy7885          15 CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQK   67 (79)
Q Consensus        15 ~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~~~   67 (79)
                      +.++|||||||||||+||++|+|||+||++++++++++++++++++.+.+++.
T Consensus         3 ~~~~APGRv~LiGEH~dy~~g~vl~~Ai~~~~~v~~~~~~~~~i~i~s~~~~~   55 (363)
T PRK00555          3 VRYAAPGRINLIGEHTDYNLGFALPIALPQRTVVTFTPEHTDAITASSDRADG   55 (363)
T ss_pred             EEEEcCceEEeecccccCCCCeEEeEEeeccEEEEEEECCCCEEEEEECCCCC
Confidence            35789999999999999999999999999999999999999999999887643

>PRK05101 galactokinase; Provisional

Probab=99.71  E-value=2.1e-17  Score=123.81  Aligned_cols=62  Identities=26%  Similarity=0.394  Sum_probs=55.5

Q ss_pred             hhhhhccee--E-----EEEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEEEcCCC
Q psy7885           5 VNLIGEHID--Y-----CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQ   66 (79)
Q Consensus         5 ~~~~~~~f~--y-----~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~~   66 (79)
                      .+++.+.|+  |     .+++|||||||+|||+||+||+|||+||++++++++++++++.+++.+.+++
T Consensus         4 ~~~~~~~f~~~fg~~p~~~~~APgRvnL~GeH~Dy~gg~vL~~AId~~~~v~i~~~~~~~i~v~s~~~~   72 (382)
T PRK05101          4 KQKTQSLFAQQFGYPPTHTIQAPGRVNLIGEHTDYNDGFVLPCAIDYQTVISCAKRDDRIVRVIAADYD   72 (382)
T ss_pred             HHHHHHHHHHHhCCCCCeEEECCceEEEeccceeecCCEEEEEEecccEEEEEEECCCCEEEEEECCCC
Confidence            345667777  6     7889999999999999999999999999999999999999999999887763

>TIGR00131 gal_kin galactokinase

Probab=99.69  E-value=3.8e-17  Score=121.95  Aligned_cols=61  Identities=33%  Similarity=0.544  Sum_probs=54.3

Q ss_pred             hhhhccee--E-----EEEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEEEcCCC
Q psy7885           6 NLIGEHID--Y-----CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQ   66 (79)
Q Consensus         6 ~~~~~~f~--y-----~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~~   66 (79)
                      +.+.+.|+  |     ++++|||||||+|||+||+||+|||+||++++++++++++++.+++.+.+.+
T Consensus         2 ~~~~~~f~~~fg~~p~~~~~APgrv~L~GeH~dy~g~~vl~~AI~~~~~v~~~~~~~~~i~i~~~~~~   69 (386)
T TIGR00131         2 ESIQKIFASAFGAKPDFTARAPGRVNLIGEHTDYNDGSVLPCAIDFGTLCAVAVRDDKNVRIYLANAD   69 (386)
T ss_pred             hHHHHHHHHHHCCCCCEEEECCcceEeeccceeeCCceEEeeEeeccEEEEEEECCCCeEEEEECCCC
Confidence            44566666  6     7789999999999999999999999999999999999999999999887763

The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.

>KOG0631|consensus

Probab=99.68  E-value=4.2e-17  Score=125.94  Aligned_cols=62  Identities=42%  Similarity=0.736  Sum_probs=53.0

Q ss_pred             EEEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCc--EEEEEcCCCCcceEEeecCC
Q psy7885          15 CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGD--LNLYNIDDQKYDDYHSTVDT   77 (79)
Q Consensus        15 ~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~--v~i~s~~~~~~~~~~l~l~~   77 (79)
                      .+++|||||||||||+||+++.|+|||||+++.+++.+++|..  +++.|.+. ++..+++.+..
T Consensus        40 ~~a~~PgRVnLiGEHiDy~~~sVlpmaid~~~l~~~~~~~d~~~sl~~tN~~~-~f~~~~~~~p~  103 (489)
T KOG0631|consen   40 FVARAPGRVNLIGEHIDYCGYSVLPMAIDVDTLIAVAPSDDGIVSLRLTNFNP-DFIYFKYPLPS  103 (489)
T ss_pred             EEEecCCceecccceeeecCceeeeEEeeeeeEEEEEEcCCCceeEEEecCCC-ccceeeccCCc
Confidence            7899999999999999999999999999999999999999988  55555554 46666666543

>TIGR00549 mevalon_kin mevalonate kinase

Probab=99.49  E-value=3.3e-14  Score=100.62  Aligned_cols=46  Identities=17%  Similarity=0.182  Sum_probs=40.5

Q ss_pred             CCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEEEcCC
Q psy7885          19 VPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDD   65 (79)
Q Consensus        19 APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~   65 (79)
                      ||||++|+|||+||+||+|||+||++++++++.+++++ +++.+..+
T Consensus         1 aPgkv~L~GEH~v~~g~~al~~aI~~~~~~~~~~~~~~-~~i~~~~~   46 (273)
T TIGR00549         1 APGKIILFGEHAVVYGEPAIAAPIPLRTTVTVIESSDG-SFIESDLG   46 (273)
T ss_pred             CCceEEEEecChhccCCCeeEEEecccEEEEEEEcCCC-ceEecccc
Confidence            79999999999999999999999999999999998776 56655443

Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.

>PRK03817 galactokinase; Provisional

Probab=99.47  E-value=8.1e-14  Score=102.75  Aligned_cols=50  Identities=32%  Similarity=0.528  Sum_probs=43.9

Q ss_pred             EEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEEEcCCCC
Q psy7885          16 RYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQK   67 (79)
Q Consensus        16 ~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~~~   67 (79)
                      .++|||||+|+|||+||+||++|+|||++++++.++++  +.+++.+.+++.
T Consensus         2 ~~~APgrv~L~Geh~d~~~g~~l~~aI~~~~~v~~~~~--~~~~i~~~~~~~   51 (351)
T PRK03817          2 KVKSPGRVNLIGEHTDYNDGYVLPFAINLYTFLEIEKS--EKFIFYSENFNE   51 (351)
T ss_pred             EEEeeeeEEEeccceeeCCCeEEEEEecCcEEEEEEeC--CeEEEEECCCCC
Confidence            57899999999999999999999999999999999875  457887776643

>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional

Probab=99.43  E-value=3.2e-13  Score=111.44  Aligned_cols=54  Identities=28%  Similarity=0.294  Sum_probs=49.1

Q ss_pred             EEEcCCceEEEeeeccc------cCCceeeeeecccc----EEEEEEeCCCCcEEEEEcCCCCc
Q psy7885          15 CRYSVPGRVNLIGEHID------YCRYSVCPMALEQN----ILVAFKCNENGDLNLYNIDDQKY   68 (79)
Q Consensus        15 ~~~~APGRvnliGeHtD------y~gg~Vl~~Ai~~~----~~v~~~~~~d~~v~i~s~~~~~~   68 (79)
                      .+++|||||||+|||||      |+||.|||+||++.    +.+.++++++.++++.+.+++..
T Consensus       610 ~~~~aPgRVnLiGghTDtPpy~~ynGG~VLn~AId~~g~~pi~v~v~~~~d~~irl~S~d~~~~  673 (974)
T PRK13412        610 VWGRSPVRIDLAGGWTDTPPYCLYSGGNVVNLAIELNGQPPLQVYVKPCSEPHIVLRSIDLGAM  673 (974)
T ss_pred             EEEeCceEEeecccCcCCCcccCcCCcEEEEEEEeCCCCccEEEEEEECCCCeEEEEECCCCCc
Confidence            44599999999999999      99999999999997    99999999999999999887543

>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch

Probab=99.33  E-value=4.4e-12  Score=94.50  Aligned_cols=51  Identities=14%  Similarity=0.112  Sum_probs=45.9

Q ss_pred             EEcCCceEEEeeeccccC-CceeeeeeccccEEEEEEeCCCCcEEEEEcCCC
Q psy7885          16 RYSVPGRVNLIGEHIDYC-RYSVCPMALEQNILVAFKCNENGDLNLYNIDDQ   66 (79)
Q Consensus        16 ~~~APGRvnliGeHtDy~-gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~~   66 (79)
                      .++||||++|+|||+||+ |.++|++||++++++.+++++++.+++.+.+++
T Consensus         2 ~~~APGKl~L~GEhavv~~G~pAl~~aI~~~~~v~i~~~~~~~~~i~s~~~~   53 (358)
T TIGR01220         2 VVHAPGKLFVAGEYAVVEPGNPAILVAVDRFVTVTVEDADGAADVIISSDLG   53 (358)
T ss_pred             eeecceeEEEeeeEEEecCCCeEEEEEEcCcEEEEEEeCCCCceEEEecCCC
Confidence            578999999999999999 667999999999999999998888888887763

This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.

>PLN02677 mevalonate kinase

Probab=99.20  E-value=3.8e-11  Score=91.02  Aligned_cols=49  Identities=22%  Similarity=0.338  Sum_probs=40.9

Q ss_pred             EEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCC----CCcEEEEEcC
Q psy7885          16 RYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNE----NGDLNLYNID   64 (79)
Q Consensus        16 ~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~----d~~v~i~s~~   64 (79)
                      .++||||++|+|||+||+|+++|++||++++++.+++++    .+.+.+...+
T Consensus         4 ~v~apgk~~l~Geh~~~~g~~a~~~ai~~~~~~~~~~~~~~~~~~~i~~~~~d   56 (387)
T PLN02677          4 KARAPGKIILAGEHAVVHGSTAVAAAIDLYTYVSLRFPPSAENDDTLKLQLKD   56 (387)
T ss_pred             EEeCCccEEEeeeeeeecCCeeeeeEeeceEEEEEEecCCCCCCCeEEEEcCC
Confidence            578999999999999999999999999999999998743    3455544333

>PRK03926 mevalonate kinase; Provisional

Probab=99.15  E-value=7.7e-11  Score=84.87  Aligned_cols=45  Identities=22%  Similarity=0.352  Sum_probs=39.5

Q ss_pred             EEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEE
Q psy7885          16 RYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLY   61 (79)
Q Consensus        16 ~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~   61 (79)
                      .++||||+||+|||+||+||.+|++||++++.+.+++++++ +++.
T Consensus         3 ~~~aPgkv~L~Geh~~~~g~~~l~~aI~~~~~v~i~~~~~~-~~i~   47 (302)
T PRK03926          3 LCSAPGKIYLFGEHAVVYGKPAIACAIDLRTYVRAEFNDDS-IYIE   47 (302)
T ss_pred             EEeeeeEEEEEecceeecCCeEEEEEecceEEEEEEECCCc-eEEe
Confidence            57899999999999999999999999999999999887543 4444

>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase

Probab=98.67  E-value=5.2e-08  Score=70.95  Aligned_cols=49  Identities=14%  Similarity=0.098  Sum_probs=43.3

Q ss_pred             EEcCCceEEEeeecccc-CCce----eeeeeccccEEEEEEeCCCCcEEEEEcC
Q psy7885          16 RYSVPGRVNLIGEHIDY-CRYS----VCPMALEQNILVAFKCNENGDLNLYNID   64 (79)
Q Consensus        16 ~~~APGRvnliGeHtDy-~gg~----Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~   64 (79)
                      .+.|||||||+|+|+|| ++|+    +++++|++...+.+.+++++.+++.+.+
T Consensus         3 ~~~apaKiNL~l~i~~~r~dGyH~l~sl~~~i~l~d~v~i~~~~~~~i~~~~~~   56 (293)
T TIGR00154         3 VFPSPAKLNLFLYITGKRPDGYHELQTLMQFLDLGDKIIISVRSDDDIRLLKGD   56 (293)
T ss_pred             eEeecccEEEEEecCCcCCCCCcceEEEEEEeccCcEEEEEECCCCcEEEeeCC
Confidence            56899999999999998 8888    9999999999999998877778886543

Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.

>KOG1511|consensus

Probab=98.44  E-value=5.6e-07  Score=68.47  Aligned_cols=61  Identities=20%  Similarity=0.197  Sum_probs=49.9

Q ss_pred             EEEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEEEcCCCCcceEEeecCC
Q psy7885          15 CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTVDT   77 (79)
Q Consensus        15 ~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~~~~~~~~l~l~~   77 (79)
                      ..++|||+|-|+|||.-.+|...|+.||++++++.+.+..++.+.+.-.+.+  -+.++++.+
T Consensus         5 l~vsaPGKvILfGEHAVVyg~~AlAaai~LrTyl~l~~san~~i~l~l~di~--~~~~w~l~~   65 (397)
T KOG1511|consen    5 LLVSAPGKVILFGEHAVVYGRTALAAAIDLRTYLRLQTSANDRILLQLPDIS--IEKAWSLAD   65 (397)
T ss_pred             eeecCCccEEEeccceeEECCceeEEEeecceeEEEEecCCCeEEEecccCC--ceEEEEhhh
Confidence            3689999999999999999999999999999999999888887777555543  244555554

>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional

Probab=98.38  E-value=7.5e-07  Score=63.93  Aligned_cols=48  Identities=13%  Similarity=0.209  Sum_probs=42.6

Q ss_pred             EEcCCceEEE----eeeccc-cCCceeeeeeccccEEEEEEeCCCCcEEEEEc
Q psy7885          16 RYSVPGRVNL----IGEHID-YCRYSVCPMALEQNILVAFKCNENGDLNLYNI   63 (79)
Q Consensus        16 ~~~APGRvnl----iGeHtD-y~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~   63 (79)
                      .+.||||+||    +|+|+| |++..+|++||+++..+.+++.+++.+++.+.
T Consensus         4 ~~~apakinl~l~i~g~~~dg~h~l~si~~ai~l~~~v~v~~~~~~~~~i~~~   56 (286)
T PRK00128          4 LEKAPAKINLSLDVLGKREDGYHEVEMIMQTIDLADRLEIEKLKEDGIVVESN   56 (286)
T ss_pred             EEeccceEEEEeecCccCCCCcceeheeeEecCCCcEEEEEECCCCCEEEEeC
Confidence            4789999999    899999 99999999999999999999887666777643

>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional

Probab=98.31  E-value=1.7e-06  Score=63.12  Aligned_cols=48  Identities=17%  Similarity=0.367  Sum_probs=42.4

Q ss_pred             EEcCCceEEE----eeeccc-cCCceeeeeeccccEEEEEEeCCCCcEEEEEc
Q psy7885          16 RYSVPGRVNL----IGEHID-YCRYSVCPMALEQNILVAFKCNENGDLNLYNI   63 (79)
Q Consensus        16 ~~~APGRvnl----iGeHtD-y~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~   63 (79)
                      .++||||+||    +|+|.| |+.+.+++++|+++..+.+++.+++.+++.+.
T Consensus         5 ~~~apakiNL~L~i~g~~~dGy~~l~~~~~~i~l~d~v~v~~~~~~~~~~~~~   57 (312)
T PRK02534          5 TLIAPAKINLHLEILGDRPDGFHELAMVMQSIDLADRLELRNNGDGTIRLHCD   57 (312)
T ss_pred             EEEeceEEEeccccCccCCCCCCceEEEEEECCCCCEEEEEECCCCcEEEEEC
Confidence            4689999999    899999 99999999999999999999887766777543

>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]

Probab=98.07  E-value=5.7e-06  Score=61.54  Aligned_cols=51  Identities=22%  Similarity=0.371  Sum_probs=46.8

Q ss_pred             EEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEEEcCCC
Q psy7885          16 RYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQ   66 (79)
Q Consensus        16 ~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~~   66 (79)
                      .++|||++-|+|||.-..|.+.+++||+..+++.++.+++..+.+.+.+..
T Consensus         2 ~~~aPgKliL~GEHAVVyG~pAI~~aI~~~~~v~~~~s~~~~~~i~~~~~~   52 (307)
T COG1577           2 SVSAPGKLILFGEHAVVYGYPAIAAAIDLRVTVTISESDSNKIVIESSDLK   52 (307)
T ss_pred             cccccccEEEEecceeeeCCchhheeeeeeEEEEEEecCCCcEEEeccCCC
Confidence            478999999999999999999999999999999999998888888887764

>PTZ00298 mevalonate kinase; Provisional

Probab=97.22  E-value=0.00042  Score=51.03  Aligned_cols=37  Identities=16%  Similarity=0.159  Sum_probs=32.4

Q ss_pred             EEcCCceEEEeeeccccCCceeeeeeccccEEEEEEe
Q psy7885          16 RYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKC   52 (79)
Q Consensus        16 ~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~   52 (79)
                      ...|||++-|+|||.+..|.+.+..+|++...+.+..
T Consensus        12 ~~~~~~kvil~GEHaVvyg~~aI~~~I~~~d~~~i~~   48 (328)
T PTZ00298         12 KHIGYGKVILFGEHFVVYGAEAIVAGIDEYTECRLEL   48 (328)
T ss_pred             CCCcCeeEEEEecceeecCCchhhhecccceEEEEEE
Confidence            3579999999999999999999999999986655554

>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]

Probab=96.92  E-value=0.0017  Score=48.89  Aligned_cols=46  Identities=15%  Similarity=0.185  Sum_probs=42.3

Q ss_pred             EEcCCceEEEeeecccc------CCceeeeeeccccEEEEEEeCCCCcEEEE
Q psy7885          16 RYSVPGRVNLIGEHIDY------CRYSVCPMALEQNILVAFKCNENGDLNLY   61 (79)
Q Consensus        16 ~~~APGRvnliGeHtDy------~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~   61 (79)
                      +.+||-|+.+.|.=||+      .||.||.++||+.+++.+.+..|.++++.
T Consensus         3 i~raPLRItfgGGGTDvepy~~k~GGaVlnatIdky~y~~i~~~~d~~I~~~   54 (333)
T COG2605           3 ISRAPLRITFGGGGTDVEPYCSKHGGAVLNATIDKYIYVTIEKGFDDEIRVR   54 (333)
T ss_pred             ccccceEEEecCCCcCchHHHHhcCCEEEEeeeeeEEEEEEccCCCceEEEe
Confidence            45799999999999998      59999999999999999999999999887

>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional

Probab=92.34  E-value=0.49  Score=34.22  Aligned_cols=47  Identities=23%  Similarity=0.444  Sum_probs=36.8

Q ss_pred             EEcCCceEEEeeecc-----c-cCCceeeeeeccccEEEEEEeCCCCcEEEEEc
Q psy7885          16 RYSVPGRVNLIGEHI-----D-YCRYSVCPMALEQNILVAFKCNENGDLNLYNI   63 (79)
Q Consensus        16 ~~~APGRvnliGeHt-----D-y~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~   63 (79)
                      .++||+++||.+ |+     | |+.--.+..+|++.-.+.+++.+++.+++.+.
T Consensus         8 ~~~apaKiNL~L-~v~~~r~dGyH~l~s~~~~i~l~D~v~i~~~~~~~~~i~~~   60 (271)
T PRK00343          8 DWPAPAKLNLFL-HITGRRADGYHELQTLFQFLDWGDTLHFEVRDDGEIRLLTP   60 (271)
T ss_pred             EEeeeeeEEEEe-ecCCcCCCCCCeeeEEEEEcccceEEEEEECCCCcEEEeCC
Confidence            357999999998 55     2 55556799999999999999877766777643

>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch

Probab=86.55  E-value=2.2  Score=33.58  Aligned_cols=51  Identities=18%  Similarity=0.182  Sum_probs=39.4

Q ss_pred             EEcCCceEEEeeeccccC-CceeeeeeccccEEEEEEeCCCC------cEEEEEcCCC
Q psy7885          16 RYSVPGRVNLIGEHIDYC-RYSVCPMALEQNILVAFKCNENG------DLNLYNIDDQ   66 (79)
Q Consensus        16 ~~~APGRvnliGeHtDy~-gg~Vl~~Ai~~~~~v~~~~~~d~------~v~i~s~~~~   66 (79)
                      +++|||++=|.||..--- +...+-.|++.++++.+.+.+++      .++|.|.++.
T Consensus         1 ~~sAPGKlliAGgYlVLep~y~aiVval~~r~~a~v~~~~~~~~~~~~~i~v~SpQf~   58 (454)
T TIGR01219         1 VASAPGKVLMAGGYLVLDKPYAGLVLGLNARFYAIVKPINEEVGAWKWDVRVKSPQFS   58 (454)
T ss_pred             CcccCceEEEecceEEecCCCcEEEEEecceEEEEEeecccccccCcceEEEeCCCCC
Confidence            368999999999987543 55678889999999998765321      3678888875

This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	79
2a2d_A	478	X-Ray Structure Of Human N-Acetyl Galactosamine Kin		2e-10
2aj4_A	548	Crystal Structure Of Saccharomyces Cerevisiae Galac		2e-08
3v5r_A	505	Crystal Structure Of The Unliganded Form Of Gal3p L		3e-08
3v2u_C	520	Crystal Structure Of The Yeast Gal Regulon Complex		3e-08
2cz9_A	350	Crystal Structure Of Galactokinase From Pyrococcus		9e-05
1wuu_A	399	Crystal Structure Of Human Galactokinase Complexed		4e-04

>pdb|2A2D|A Chain A, X-Ray Structure Of Human N-Acetyl Galactosamine Kinase Complexed With Mn-Amppnp And N-Acetyl Glactosamine Length = 478

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 20  PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTVDTFR 79
           PGRVN+IGEHIDYC YSV PMA+EQ++L+A +  +   L L N +   Y D+ ++ +  +
Sbjct: 61  PGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKTYALQLANTNPL-YPDFSTSANNIQ 119

>pdb|2AJ4|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Galactokinase In Complex With Galactose And Mg:amppnp Length = 548

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/56 (48%), Positives = 37/56 (66%), Gaps = 6/56 (10%)
Query: 20  PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKC--NENGDLNLYNID----DQKYD 69
           PGRVNLIGEHIDYC +SV P+A++ ++L A K    +N  + L N D     +K+D
Sbjct: 71  PGRVNLIGEHIDYCDFSVLPLAIDFDMLCAVKVLNEKNPSITLINADPKFAQRKFD 126

>pdb|3V5R|A Chain A, Crystal Structure Of The Unliganded Form Of Gal3p Length = 505

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/47 (53%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKC--NENGDLNLYNID 64
          PGRVNLIGEHIDYC +SV P+A++ ++L A K    +N  + L N D
Sbjct: 30 PGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVKILDEKNPSITLTNAD 76

>pdb|3V2U|C Chain C, Crystal Structure Of The Yeast Gal Regulon Complex Of The Repressor, Gal80p, And The Transducer, Gal3p, With Galactose And Atp Length = 520

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/47 (53%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKC--NENGDLNLYNID 64
          PGRVNLIGEHIDYC +SV P+A++ ++L A K    +N  + L N D
Sbjct: 45 PGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVKILDEKNPSITLTNAD 91

>pdb|2CZ9|A Chain A, Crystal Structure Of Galactokinase From Pyrococcus Horikoshi Length = 350

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYN 62
          PGRVNLIGEH DY    V PMA+  N+    +  ++G++ LY+
Sbjct: 7  PGRVNLIGEHTDYTYGYVMPMAI--NLYTKIEAEKHGEVILYS 47

>pdb|1WUU|A Chain A, Crystal Structure Of Human Galactokinase Complexed With Mgamppnp And Galactose Length = 399

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 18 SVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNL 60
          S PGRVNLIGEH DY +  V P ALE   ++     ++G ++L
Sbjct: 40 SAPGRVNLIGEHTDYNQGLVLPXALELXTVLVGSPRKDGLVSL 82

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	79
2a2c_A	478	N-acetylgalactosamine kinase; galactokinase, , tra	7e-20
3v2u_C	520	Protein GAL3; rossmann fold, GHMP superfamily, tra	4e-16
1wuu_A	399	Galactokinase; galactosemia, GHMP superfamily, tra	5e-14
2cz9_A	350	Probable galactokinase; structural genomics, NPPSF	3e-13
1pie_A	419	Galactokinase; galactose, galactosemia, transferas	2e-12
1kkh_A	317	Mevalonate kinase; mixed beta sheet, phosphate-bin	1e-09
2hfs_A	332	Mevalonate kinase, putative; GHMP kinase, trypanos	7e-08
1kvk_A	395	MK, mevalonate kinase; RMK, ATP, GHMP, transferase	1e-07
2oi2_A	292	Mevalonate kinase; enzyme-inhibitor complex, trans	3e-07
2oi2_A	292	Mevalonate kinase; enzyme-inhibitor complex, trans	2e-04
2x7i_A	308	Mevalonate kinase; transferase; HET: CIT; 2.20A {S	3e-07
2x7i_A	308	Mevalonate kinase; transferase; HET: CIT; 2.20A {S	3e-04
3k85_A	357	D-glycero-D-manno-heptose 1-phosphate kinase; bact	3e-04

>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Length = 478

 Score = 80.7 bits (199), Expect = 7e-20
 Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 1/62 (1%)

Query: 17  YSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTVD 76
              PGRVN+IGEHIDYC YSV PMA+EQ++L+A +  +   L L N +   Y D+ ++ +
Sbjct: 58  VRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKTYALQLANTNP-LYPDFSTSAN 116

Query: 77  TF 78
             
Sbjct: 117 NI 118

>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Length = 520

 Score = 70.2 bits (171), Expect = 4e-16
 Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 2/52 (3%)

Query: 17 YSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLY--NIDDQ 66
             PGRVNLIGEHIDYC +SV P+A++ ++L A K  +  + ++   N D +
Sbjct: 42 ARSPGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVKILDEKNPSITLTNADPK 93

>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Length = 399

 Score = 64.0 bits (156), Expect = 5e-14
 Identities = 21/49 (42%), Positives = 29/49 (59%)

Query: 17 YSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDD 65
           S PGRVNLIGEH DY +  V PMALE   ++     ++G ++L    +
Sbjct: 39 VSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKDGLVSLLTTSE 87

>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Length = 350

 Score = 61.5 bits (150), Expect = 3e-13
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 16 RYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQK 67
          +   PGRVNLIGEH DY    V PMA+     +  +  ++G++ LY+    +
Sbjct: 3  KVKSPGRVNLIGEHTDYTYGYVMPMAINLYTKIEAE--KHGEVILYSEHFGE 52

>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Length = 419

 Score = 59.4 bits (144), Expect = 2e-12
 Identities = 19/68 (27%), Positives = 31/68 (45%)

Query: 9   GEHIDYCRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKY 68
           G+  +   +  PGR+NLIGEH DY    V P ++        +  E+  + LY+ +  K 
Sbjct: 43  GDTKEVEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKVKLYSENFPKL 102

Query: 69  DDYHSTVD 76
                 +D
Sbjct: 103 GVIEFDLD 110

>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Length = 317

 Score = 51.9 bits (125), Expect = 1e-09
 Identities = 12/47 (25%), Positives = 19/47 (40%)

Query: 18 SVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNID 64
            P +V L GEH     Y    MA++    +  K  +  ++ L   D
Sbjct: 9  ETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLND 55

>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Length = 332

 Score = 46.7 bits (111), Expect = 7e-08
 Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 2/54 (3%)

Query: 16 RYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYD 69
          +    G+V L GEH            + +      +   N  +    +DDQ+  
Sbjct: 15 KNIGYGKVILFGEHFVVHGAEAIVAGISEYTECRLE--INPGVPGLQVDDQRPA 66

>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Length = 395

 Score = 45.6 bits (107), Expect = 1e-07
 Identities = 13/47 (27%), Positives = 20/47 (42%)

Query: 18 SVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNID 64
          S PG+V L GEH          +AL     +  +   NG ++L   +
Sbjct: 9  SAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPN 55

>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Length = 292

 Score = 44.7 bits (106), Expect = 3e-07
 Identities = 10/50 (20%), Positives = 15/50 (30%)

Query: 18 SVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQK 67
              ++ LIGEH     Y    + L +  +            LY  D   
Sbjct: 9  QAHSKIILIGEHAVVYGYPAISLPLLEVEVTCKVVPAESPWRLYEEDTLS 58

>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Length = 292

 Score = 36.6 bits (85), Expect = 2e-04
 Identities = 5/13 (38%), Positives = 7/13 (53%)

Query: 2  PGRVNLIGEHIDY 14
            ++ LIGEH   
Sbjct: 11 HSKIILIGEHAVV 23

>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Length = 308

 Score = 44.7 bits (106), Expect = 3e-07
 Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 18 SVPGRVNLIGEHIDYCRYSVCPMALEQ-NILVAFKCNENGDLNLYNID 64
             G++ LIGEH          +      I V  +  E+G+ +    D
Sbjct: 10 ESTGKIILIGEHAVTFGEPAIAVPFNAGKIKVLIEALESGNYSSIKSD 57

>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Length = 308

 Score = 35.9 bits (83), Expect = 3e-04
 Identities = 6/18 (33%), Positives = 8/18 (44%)

Query: 2  PGRVNLIGEHIDYCRYSV 19
           G++ LIGEH        
Sbjct: 12 TGKIILIGEHAVTFGEPA 29

>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Length = 357

 Score = 36.0 bits (83), Expect = 3e-04
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 6/64 (9%)

Query: 16 RYSVPGRVNLIGEHIDYCRYS------VCPMALEQNILVAFKCNENGDLNLYNIDDQKYD 69
          R   P R+ L G   D   YS      +    +        +   +G + +   D Q   
Sbjct: 5  RSKAPLRLGLAGGGSDVSPYSDIYGGLILNATINLYAYCTIEETNSGRIEINAYDAQCCK 64

Query: 70 DYHS 73
           Y S
Sbjct: 65 SYLS 68

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	79
3v2u_C	520	Protein GAL3; rossmann fold, GHMP superfamily, tra	99.86
2a2c_A	478	N-acetylgalactosamine kinase; galactokinase, , tra	99.65
3k85_A	357	D-glycero-D-manno-heptose 1-phosphate kinase; bact	99.64
1kvk_A	395	MK, mevalonate kinase; RMK, ATP, GHMP, transferase	99.57
1wuu_A	399	Galactokinase; galactosemia, GHMP superfamily, tra	99.54
1pie_A	419	Galactokinase; galactose, galactosemia, transferas	99.53
3k17_A	365	LIN0012 protein; protein structure initiative II(P	99.5
2pg9_A	337	Phosphomevalonate kinase; GHMP kinase superfamily,	99.41
4hac_A	321	Mevalonate kinase; GHMP, ATP binding, phosphorylat	99.25
2cz9_A	350	Probable galactokinase; structural genomics, NPPSF	99.24
1kkh_A	317	Mevalonate kinase; mixed beta sheet, phosphate-bin	99.19
2x7i_A	308	Mevalonate kinase; transferase; HET: CIT; 2.20A {S	99.14
3gon_A	335	Phosphomevalonate kinase; GHMP kinase superfamily,	98.93
2hfs_A	332	Mevalonate kinase, putative; GHMP kinase, trypanos	98.85
2oi2_A	292	Mevalonate kinase; enzyme-inhibitor complex, trans	98.79
2ww4_A	283	4-diphosphocytidyl-2C-methyl-D-erythritol kinase;	98.65
2v8p_A	271	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	98.16
3qt5_A	332	Mevalonate diphosphate decarboxylase; GHMP kinase	98.09
2gs8_A	317	Mevalonate pyrophosphate decarboxylase; streptococ	97.97
1uek_A	275	4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k	97.4
1h72_C	296	HK, homoserine kinase; transferase, threonine bios	97.08
3pyf_A	306	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;	95.41
1fi4_A	416	Mevalonate 5-diphosphate decarboxylase; mixed alph	91.27

>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*

Probab=99.86  E-value=1.3e-22  Score=156.34  Aligned_cols=74  Identities=36%  Similarity=0.609  Sum_probs=63.6

Q ss_pred             hhhhhhhccee--E-----EEEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeC--CCCcEEEEEcCCC-CcceEE
Q psy7885           3 GRVNLIGEHID--Y-----CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCN--ENGDLNLYNIDDQ-KYDDYH   72 (79)
Q Consensus         3 ~r~~~~~~~f~--y-----~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~--~d~~v~i~s~~~~-~~~~~~   72 (79)
                      +||+++.+.|+  |     .+++||||||||||||||+||+||||||+++++++++++  +|++++++|.+.+ +..+|+
T Consensus        21 ~R~~~l~~~F~~~fg~~p~~v~~APGRVnLiGEHtDyngG~VLp~AI~~~~~vav~~~~~~d~~i~i~S~~~~~~~~~~~  100 (520)
T 3v2u_C           21 QKHLAVVDAFFQTYHVKPDFIARSPGRVNLIGEHIDYCDFSVLPLAIDVDMLCAVKILDEKNPSITLTNADPKFAQRKFD  100 (520)
T ss_dssp             HHHHHHHHHHHHHHSSCCSEEEEEEEEEEEECTTCGGGTCCBEEEEEEEEEEEEEEECCCSSCEEEEEESSTTSCCEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEcceeEEEeccCeeeCCCEEEEEEeecceEEEEEeccCCCCEEEEEECCCCCCceEEE
Confidence            49999999999  7     789999999999999999999999999999999999998  8899999998742 123455


Q ss_pred             eecC
Q psy7885          73 STVD   76 (79)
Q Consensus        73 l~l~   76 (79)
                      ++++
T Consensus       101 l~~~  104 (520)
T 3v2u_C          101 LPLD  104 (520)
T ss_dssp             CCTT
T ss_pred             eccC
Confidence            5333

>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*

Probab=99.65  E-value=1.3e-16  Score=120.42  Aligned_cols=73  Identities=41%  Similarity=0.721  Sum_probs=63.0

Q ss_pred             hhhhhhhccee--E-----EEEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEEEcCCCCcceEEeec
Q psy7885           3 GRVNLIGEHID--Y-----CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTV   75 (79)
Q Consensus         3 ~r~~~~~~~f~--y-----~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~~~~~~~~l~l   75 (79)
                      +||+++.+.|.  |     ++++||||+||+|||+||+||.||++||++++++++++++++.+++.+.+. ++..+++++
T Consensus        37 ~r~~~~~~~f~~~fg~~~~~~~~APgrv~L~Geh~D~~g~~vl~~AI~~~~~v~v~~~~~~~i~i~~~~~-~~~~~~~~~  115 (478)
T 2a2c_A           37 PRLLKLKEMFNSKFGSIPKFYVRAPGRVNIIGEHIDYCGYSVLPMAVEQDVLIAVEPVKTYALQLANTNP-LYPDFSTSA  115 (478)
T ss_dssp             HHHHHHHHHHHHHHSSCCSEEEEEEEEEEEECTTCGGGTCCBEEEEEEEEEEEEEEECSSSCEEEEESST-TSCCEEECC
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEeceEEEEeccceeeCCCeEEEEEecccEEEEEEECCCCeEEEEECCC-CCcceeccc
Confidence            48999999999  7     789999999999999999999999999999999999998888899988765 233555544


Q ss_pred             C
Q psy7885          76 D   76 (79)
Q Consensus        76 ~   76 (79)
                      +
T Consensus       116 ~  116 (478)
T 2a2c_A          116 N  116 (478)
T ss_dssp             C
T ss_pred             h
Confidence            4

>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=1.9e-16  Score=115.74  Aligned_cols=53  Identities=17%  Similarity=0.204  Sum_probs=49.0

Q ss_pred             EEEcCCceEEEeeecccc------CCceeeeeeccccEEEEEEeCCCCcEEEEEcCCCC
Q psy7885          15 CRYSVPGRVNLIGEHIDY------CRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQK   67 (79)
Q Consensus        15 ~~~~APGRvnliGeHtDy------~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~~~   67 (79)
                      +.++|||||||+||||||      +||.|||+||++++++++++++|+.+++.+.++++
T Consensus         4 i~~~APgRvnL~GehtD~~~~~~~~gG~vl~~AId~~~~v~i~~~~d~~i~i~s~~~~~   62 (357)
T 3k85_A            4 VRSKAPLRLGLAGGGSDVSPYSDIYGGLILNATINLYAYCTIEETNSGRIEINAYDAQC   62 (357)
T ss_dssp             EEEEEEEEEEEECTTTTSTTHHHHTCEEEEEEEEEEEEEEEEEECSSSEEEEEETTTTE
T ss_pred             EEEECceEEEEecCCccCcchhhcCCCEEEEEEEeCcEEEEEEECCCCeEEEEECCCCc
Confidence            358999999999999999      99999999999999999999999999999987743

>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A

Probab=99.57  E-value=2.2e-15  Score=110.28  Aligned_cols=51  Identities=25%  Similarity=0.296  Sum_probs=47.4

Q ss_pred             EEEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEEEcCC
Q psy7885          15 CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDD   65 (79)
Q Consensus        15 ~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~   65 (79)
                      +.++|||||||+|||+||+||.||++||++++++++++++++.+++.+.+.
T Consensus         6 ~~~~APgrv~L~Geh~d~~g~~~l~~ai~~~~~v~v~~~~~~~i~i~~~~~   56 (395)
T 1kvk_A            6 LLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNV   56 (395)
T ss_dssp             EEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECSSSEEEEEETTT
T ss_pred             EEEEeCeEEEEecCCeeeECCEeeeeEeeccEEEEEEECCCCeEEEEcCCC
Confidence            358999999999999999999999999999999999999888999987765

>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7

Probab=99.54  E-value=3.7e-15  Score=109.38  Aligned_cols=64  Identities=33%  Similarity=0.440  Sum_probs=58.0

Q ss_pred             hhhhhhhccee--E-----EEEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEEEcCCC
Q psy7885           3 GRVNLIGEHID--Y-----CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQ   66 (79)
Q Consensus         3 ~r~~~~~~~f~--y-----~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~~   66 (79)
                      +|++++.+.|.  |     +.++||||+||+|||+||+||.+|++||++++++.+++++++.+++.+.+.+
T Consensus        18 ~~~~~~~~~f~~~~~~~~~~~~~APgkv~L~Geh~Dy~~~~~l~~ai~~~~~v~v~~~~~~~i~i~~~~~~   88 (399)
T 1wuu_A           18 ELLAEARRAFREEFGAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKDGLVSLLTTSEG   88 (399)
T ss_dssp             HHHHHHHHHHHHHHSSCCSEEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEETTCEEEEEECCSS
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEeeeeEEEeccccccCCCEEEeEEecccEEEEEEECCCCeEEEEECCCC
Confidence            58888888888  6     6899999999999999999999999999999999999988888999887653

>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7

Probab=99.53  E-value=9.3e-15  Score=107.96  Aligned_cols=62  Identities=27%  Similarity=0.436  Sum_probs=56.6

Q ss_pred             hhhhhhccee--E------EEEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEEEcCC
Q psy7885           4 RVNLIGEHID--Y------CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDD   65 (79)
Q Consensus         4 r~~~~~~~f~--y------~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~   65 (79)
                      |++++.+.|.  |      +.++||||+||+|||+||+||.+|++||++++++.+++++++.+++.+.+.
T Consensus        30 ~~~~~~~~f~~~~g~~~~~~~~~APgkv~L~Geh~d~~G~~~l~~aI~l~~~v~v~~~~~~~i~i~~~~~   99 (419)
T 1pie_A           30 VLSALTEKFAEVFGDTKEVEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKVKLYSENF   99 (419)
T ss_dssp             HHHHHHHHHHHHHSCCCSCEEEEEEEEEEEECCSCTTTTCEEEEEEEEEEEEEEEEECSSSEEEEEETTC
T ss_pred             HHHHHHHHHHHHhCCCCceEEEEeeEEEEEcccceeeCCCEEEEEEEcccEEEEEEECCCCEEEEEECCC
Confidence            8888998898  7      578999999999999999999999999999999999998888889887664

>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}

Probab=99.50  E-value=1.2e-14  Score=106.64  Aligned_cols=50  Identities=16%  Similarity=0.224  Sum_probs=43.8

Q ss_pred             EEEcCCceEEEeeeccccC-CceeeeeeccccEEEEEEeCCCCcEEEEEcCCC
Q psy7885          15 CRYSVPGRVNLIGEHIDYC-RYSVCPMALEQNILVAFKCNENGDLNLYNIDDQ   66 (79)
Q Consensus        15 ~~~~APGRvnliGeHtDy~-gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~~   66 (79)
                      +.++||||++|+|||+||+ ||+|||+||+++++++++++++.  ++.+..++
T Consensus         7 i~~~APGrv~L~GEh~~~~~g~~~l~~Ai~~~~~v~v~~~~~~--~i~s~~~~   57 (365)
T 3k17_A            7 LQVKIPGKLYVAGEYAVVESGHTAILTAVNRYITLTLEDSERN--ELWIPHYE   57 (365)
T ss_dssp             EEEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSSC--EEECTTCS
T ss_pred             EEEEecceEEEecccEEecCCCEEEEEEccCcEEEEEEECCCc--EEEecCCC
Confidence            4589999999999999995 99999999999999999998776  56666653

>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}

Probab=99.25  E-value=6.2e-12  Score=90.40  Aligned_cols=48  Identities=23%  Similarity=0.301  Sum_probs=43.0

Q ss_pred             EEEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEEEcC
Q psy7885          15 CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNID   64 (79)
Q Consensus        15 ~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~   64 (79)
                      +.++||||+||+|||+||+||.+|++||++++++.++++++  +++.+.+
T Consensus        22 i~~~APgkinL~GeH~~~~Gg~~l~~aI~~~~~v~v~~~~~--i~i~~~~   69 (321)
T 4hac_A           22 VSCSAPGKIYLFGEHAVVYGETAIACAVELRTRVRAELNDS--ITIQSQI   69 (321)
T ss_dssp             EEEEEEEEEEEECTTTGGGTCCEEEEEEEEEEEEEEEECSS--EEEEETT
T ss_pred             EEEEeeEEEEEEccCEEEcCCEEEEEEeccCEEEEEEECCC--EEEEECC
Confidence            56899999999999999999999999999999999998643  8887754

>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*

Probab=99.24  E-value=2.9e-12  Score=91.34  Aligned_cols=48  Identities=35%  Similarity=0.438  Sum_probs=43.3

Q ss_pred             EEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEEEc
Q psy7885          16 RYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNI   63 (79)
Q Consensus        16 ~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~   63 (79)
                      .++||||+||+|||+||+||.+|++||++++++.+++++++.+++.+.
T Consensus         3 ~~~aP~ki~L~Ge~~d~~~~~~l~~ai~~~~~v~v~~~~~~~i~i~~~   50 (350)
T 2cz9_A            3 KVKSPGRVNLIGEHTDYTYGYVMPMAINLYTKIEAEKHGEVILYSEHF   50 (350)
T ss_dssp             EEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEESSEEEEETTT
T ss_pred             EEEeccEEEEeecChhhCCCEEEEEEeeceEEEEEEECCCCeEEEEEC
Confidence            578999999999999999999999999999999999887767777544

>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A

Probab=99.19  E-value=2e-11  Score=86.31  Aligned_cols=51  Identities=24%  Similarity=0.296  Sum_probs=46.0

Q ss_pred             EEEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEEEcCC
Q psy7885          15 CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDD   65 (79)
Q Consensus        15 ~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~   65 (79)
                      +.++||||+||+|||+||+|+.+|++||++++++.+++++++.+++.+.+.
T Consensus         6 ~~~~APgki~L~geh~~~~G~~~l~~ai~~~~~v~v~~~~~~~i~i~~~~~   56 (317)
T 1kkh_A            6 MIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLNDL   56 (317)
T ss_dssp             EEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECCSSEEEEEETTT
T ss_pred             EEEEccEEEEEEcCCeeEcCCEEEEEEecCeEEEEEEECCCCeEEEEeCCC
Confidence            357899999999999999999999999999999999998777888887654

>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}

Probab=99.14  E-value=4.4e-11  Score=84.18  Aligned_cols=49  Identities=20%  Similarity=0.230  Sum_probs=42.6

Q ss_pred             EEEcCCceEEEeeeccccCCceeeeeecccc-EEEEEEeCCCCc-EEEEEc
Q psy7885          15 CRYSVPGRVNLIGEHIDYCRYSVCPMALEQN-ILVAFKCNENGD-LNLYNI   63 (79)
Q Consensus        15 ~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~-~~v~~~~~~d~~-v~i~s~   63 (79)
                      ..++||||+||+|||+||+|+.+|++||++. +.+.+++++++. +++.+.
T Consensus         7 ~~~~APgkinL~Ge~~d~~g~~~l~~ai~~~~~~v~v~~~~~~~~i~~~~~   57 (308)
T 2x7i_A            7 GYGESTGKIILIGEHAVTFGEPAIAVPFNAGKIKVLIEALESGNYSSIKSD   57 (308)
T ss_dssp             EEEEEEEEEEEEEBTTCCTTSCEEEEEEEEEEEEEEEEECCTTCCCEEEEE
T ss_pred             eEEEEeeEEEEEecCeeecCCeEEEEEEcCCEEEEEEEECCCCCeeEEEec
Confidence            3578999999999999999999999999985 889999887766 777654

>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A

Probab=98.93  E-value=7.6e-10  Score=77.75  Aligned_cols=45  Identities=9%  Similarity=-0.043  Sum_probs=39.5

Q ss_pred             EEcCCceEEEeeec-cccCCceeeeeeccccEEEEEEeCCCCcEEE
Q psy7885          16 RYSVPGRVNLIGEH-IDYCRYSVCPMALEQNILVAFKCNENGDLNL   60 (79)
Q Consensus        16 ~~~APGRvnliGeH-tDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i   60 (79)
                      .++|||++.|+||| ..|.|+++|++||++++++.++++++..+..
T Consensus         3 ~v~apGKviL~GEhaVv~~G~~Ala~ai~~~~~v~i~~~~~~~i~~   48 (335)
T 3gon_A            3 AVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDSYRIYS   48 (335)
T ss_dssp             EEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSSCEEEE
T ss_pred             EEEECCEEEEEeeeeEEcCCCcEEEEEecceEEEEEEECCCCEEEE
Confidence            58999999999999 5666999999999999999999988765543

>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*

Probab=98.85  E-value=1.7e-09  Score=76.76  Aligned_cols=48  Identities=17%  Similarity=0.133  Sum_probs=41.2

Q ss_pred             EEEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCC-CCcEEEEE
Q psy7885          15 CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNE-NGDLNLYN   62 (79)
Q Consensus        15 ~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~-d~~v~i~s   62 (79)
                      +.++||||+||+|||.|++||.+|.+||++...+.+.+++ ++.+++.+
T Consensus        14 ~~~~ApgKi~L~Geh~~~~G~~~l~~ai~~~~~v~v~~~~~~~~~~~~~   62 (332)
T 2hfs_A           14 GKNIGYGKVILFGEHFVVHGAEAIVAGISEYTECRLEINPGVPGLQVDD   62 (332)
T ss_dssp             SCCEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEETTCCSEEEEE
T ss_pred             EEEEEeEEEEEecCCEEEcCCeEEEEEecccEEEEEEEcCCCCCeEEEe
Confidence            4578999999999999999999999999999999998864 45566643

>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}

Probab=98.79  E-value=3.8e-09  Score=73.32  Aligned_cols=46  Identities=24%  Similarity=0.301  Sum_probs=39.5

Q ss_pred             EEEcCCceEEEeeeccccCCceeeeeec-cccEEEEEEeCCCCcEEEE
Q psy7885          15 CRYSVPGRVNLIGEHIDYCRYSVCPMAL-EQNILVAFKCNENGDLNLY   61 (79)
Q Consensus        15 ~~~~APGRvnliGeHtDy~gg~Vl~~Ai-~~~~~v~~~~~~d~~v~i~   61 (79)
                      ..++||||+||+|||+||+|+.+|++|| ++++.+.+++++ +.+++.
T Consensus         6 ~~~~aP~ki~L~Ge~~~~~g~~~l~~ai~~~~~~v~v~~~~-~~~~i~   52 (292)
T 2oi2_A            6 GVGQAHSKIILIGEHAVVYGYPAISLPLLEVEVTCKVVPAE-SPWRLY   52 (292)
T ss_dssp             EEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEEECS-SCCCCC
T ss_pred             EEEEeeeEEEEEeCCeeecCCcEEEEEEcCcEEEEEEEECC-CceEEE
Confidence            3578999999999999999999999999 999999999864 344443

>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*

Probab=98.65  E-value=1.8e-08  Score=71.34  Aligned_cols=46  Identities=22%  Similarity=0.460  Sum_probs=41.6

Q ss_pred             EcCCceEEE----eeeccc-cCCceeeeeeccccEEEEEEeCCCCcEEEEE
Q psy7885          17 YSVPGRVNL----IGEHID-YCRYSVCPMALEQNILVAFKCNENGDLNLYN   62 (79)
Q Consensus        17 ~~APGRvnl----iGeHtD-y~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s   62 (79)
                      ++|||||||    +|+|+| |+++.++++||++...+.+++++++.+++.+
T Consensus         5 ~~apaKinL~L~v~g~~~dGyh~l~sl~~ai~l~~~v~v~~~~~~~i~i~~   55 (283)
T 2ww4_A            5 WPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIELRDDGDIRLLT   55 (283)
T ss_dssp             EEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEEEEEEESSSCEEECS
T ss_pred             ccCceeEEeeeeccCCCCCCCcceEEEEEECCCCcEEEEEECCCCcEEEEe
Confidence            579999999    899999 9999999999999999999988777787754

>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*

Probab=98.16  E-value=1.2e-06  Score=60.95  Aligned_cols=44  Identities=16%  Similarity=0.218  Sum_probs=38.5

Q ss_pred             EEcCCceEEE----eeeccc-cCCceeeeeeccccEEEEEEeCCCCcEEEEE
Q psy7885          16 RYSVPGRVNL----IGEHID-YCRYSVCPMALEQNILVAFKCNENGDLNLYN   62 (79)
Q Consensus        16 ~~~APGRvnl----iGeHtD-y~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s   62 (79)
                      .++||||+||    +|+|.| |+++.++++||++...+ +++  ++.+++..
T Consensus         6 ~~~aPakinl~l~v~g~r~dgyh~~~sl~~ai~l~~~v-~~~--~~~i~i~~   54 (271)
T 2v8p_A            6 KVLSPAKINLGLWVLGRLPSGYHEILTLYQEIPFYDEI-YIR--EGVLRVET   54 (271)
T ss_dssp             EEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEEE-EEE--ESSCEEEE
T ss_pred             EEeecceEEeeEeecccCCCCCceEEEEEEEcCcccEE-EEe--CCeEEEEe
Confidence            4789999999    899999 99999999999999999 887  44677765

>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A

Probab=98.09  E-value=1.7e-06  Score=62.64  Aligned_cols=35  Identities=11%  Similarity=0.034  Sum_probs=32.2

Q ss_pred             EEEcCCceEEEeeeccccCCceeeeeeccccEEEE
Q psy7885          15 CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVA   49 (79)
Q Consensus        15 ~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~   49 (79)
                      ..++||+|++|||+|+||++|.+||+....++.+.
T Consensus        10 ~~~~ap~nialiky~gk~~~~~~lP~~dslglal~   44 (332)
T 3qt5_A           10 GKARAHTNIALIKYWGKADETYIIPMNNSLSVTLD   44 (332)
T ss_dssp             EEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEE
T ss_pred             EEEEecCcEEEEeeeeeccCCccccCCCceEEEec
Confidence            56899999999999999999999999999888776

>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}

Probab=97.97  E-value=2.2e-06  Score=60.67  Aligned_cols=35  Identities=6%  Similarity=-0.003  Sum_probs=30.6

Q ss_pred             EEEcCCceEEEeeeccccCCceeeeeeccccEEEE
Q psy7885          15 CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVA   49 (79)
Q Consensus        15 ~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~   49 (79)
                      ..+.||||++|+|+|+||++|++||+.....+.+.
T Consensus         9 ~~~~ap~~i~l~~~~g~~~~g~~lp~~dslg~al~   43 (317)
T 2gs8_A            9 ITVTSYANIAIIKYWGKENQAKMIPSTSSISLTLE   43 (317)
T ss_dssp             EEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEE
T ss_pred             EEEEecCcEEEEeeeeeccCCcccCCCCceEEEee
Confidence            46899999999999999999999998887776664

>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5

Probab=97.40  E-value=0.00011  Score=50.91  Aligned_cols=35  Identities=17%  Similarity=0.125  Sum_probs=32.7

Q ss_pred             EcCCceEEE----eeeccc-cCCceeeeeeccccEEEEEEe
Q psy7885          17 YSVPGRVNL----IGEHID-YCRYSVCPMALEQNILVAFKC   52 (79)
Q Consensus        17 ~~APGRvnl----iGeHtD-y~gg~Vl~~Ai~~~~~v~~~~   52 (79)
                      + ||||+||    +|+|.| |++..++.+||+++..+.+.+
T Consensus         4 ~-aPakinl~l~v~g~r~dgyh~~~sl~~ai~l~~~v~~~~   43 (275)
T 1uek_A            4 L-APAKVNLGLSVRFRREDGYHELHTLFAPFSLADRLVVEP   43 (275)
T ss_dssp             E-EEEEEEEEEEEEEECTTSSEEEEEEEEEEEEEEEEEEEE
T ss_pred             e-ecCeEEEeeeecCcCCCCCceeeEEEEEcCCCCEEEEEE
Confidence            5 9999999    799999 999999999999999999887

>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*

Probab=97.08  E-value=0.00044  Score=47.87  Aligned_cols=43  Identities=14%  Similarity=0.242  Sum_probs=33.8

Q ss_pred             EEEcCCceEEEeeeccccCCceeeeeeccc-cEEEEEEeCCCCcEEEEE
Q psy7885          15 CRYSVPGRVNLIGEHIDYCRYSVCPMALEQ-NILVAFKCNENGDLNLYN   62 (79)
Q Consensus        15 ~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~-~~~v~~~~~~d~~v~i~s   62 (79)
                      +.++||+|++.+|++.|     +|++|++. ...+.+.+++++.+++..
T Consensus         3 i~v~aPaki~nlG~g~~-----vl~~a~d~~~~~~~~~~~~~~~~~i~~   46 (296)
T 1h72_C            3 VRVKAPCTSANLGVGFD-----VFGLCLKEPYDVIEVEAIDDKEIIIEV   46 (296)
T ss_dssp             EEEEEEEEEECTGGGTT-----TEEEEEEEEEEEEEEEEESSSSEEEEE
T ss_pred             EEEEEEeehhccccchh-----hhHHhcccccEEEEEEecCCCeEEEEE
Confidence            35789999999999877     99999998 556667766666677754

>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*

Probab=95.41  E-value=0.025  Score=40.18  Aligned_cols=48  Identities=25%  Similarity=0.248  Sum_probs=40.5

Q ss_pred             EEEcCCceEEE----eeeccc-cCCceeeeeeccccEEEEEEeCCCCcEEEEE
Q psy7885          15 CRYSVPGRVNL----IGEHID-YCRYSVCPMALEQNILVAFKCNENGDLNLYN   62 (79)
Q Consensus        15 ~~~~APGRvnl----iGeHtD-y~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s   62 (79)
                      +.++||+++||    .|.+.| |+.--.+-+||++.-.+.+.+.++..+++..
T Consensus         6 ~~~~apAKiNL~L~v~~~r~DGyh~l~s~~~al~l~D~l~~~~~~~~~i~~~g   58 (306)
T 3pyf_A            6 VTVRVPGKVNLYLAVGDRREDGYHELTTVFHAVSLVDEVTVRNADVLSLELVG   58 (306)
T ss_dssp             EEEEEEEEEEEEEEECCCCTTSCCCEEEEEEEEEEEEEEEEEECSSCEEEEES
T ss_pred             EEEEecceEEeecccCCcCCCCCcchheeEEEcccCCEEEEEECCCCEEEEeC
Confidence            35789999999    999999 8888889999999988999887666666653

>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2

Probab=91.27  E-value=0.083  Score=39.05  Aligned_cols=27  Identities=7%  Similarity=-0.063  Sum_probs=23.0

Q ss_pred             EEEcCCceEEEeeeccccCCceeeeee
Q psy7885          15 CRYSVPGRVNLIGEHIDYCRYSVCPMA   41 (79)
Q Consensus        15 ~~~~APGRvnliGeHtDy~gg~Vl~~A   41 (79)
                      +.++||+|+.|++.|.+|.++..+|..
T Consensus        26 ~~~~Ap~nialik~~gkr~~~~~~P~~   52 (416)
T 1fi4_A           26 ASVTAPVNIATLKYWGKRDTKLNLPTN   52 (416)
T ss_dssp             EEEEECCEEEEECCCCEEETTTTEESS
T ss_pred             EEEEecceEEEEecccccCCceecccc
Confidence            568999999999999999998865543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	79
d1kvka1	225	d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus	2e-11
d1piea1	205	d.14.1.5 (A:9-213) Galactokinase {Lactococcus lact	2e-10
d1wuua1	215	d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapi	2e-10
d1s4ea1	176	d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococ	3e-10
d1kkha1	180	d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Met	6e-08
d1kkha1	180	d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Met	5e-04
d1k47a1	194	d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK)	4e-04

>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 225

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Mevalonate kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.9 bits (131), Expect = 2e-11
 Identities = 13/47 (27%), Positives = 20/47 (42%)

Query: 18 SVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNID 64
          S PG+V L GEH          +AL     +  +   NG ++L   +
Sbjct: 9  SAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPN 55

>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]} Length = 205

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Galactokinase
species: Lactococcus lactis [TaxId: 1358]

 Score = 52.2 bits (124), Expect = 2e-10
 Identities = 18/60 (30%), Positives = 28/60 (46%)

Query: 17 YSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTVD 76
          +  PGR+NLIGEH DY    V P ++        +  E+  + LY+ +  K       +D
Sbjct: 23 FFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKVKLYSENFPKLGVIEFDLD 82

>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Galactokinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 2e-10
 Identities = 21/55 (38%), Positives = 30/55 (54%)

Query: 17 YSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDY 71
           S PGRVNLIGEH DY +  V PMALE   ++     ++G ++L    +   +  
Sbjct: 31 VSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKDGLVSLLTTSEGADEPQ 85

>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 176

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Galactokinase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 51.4 bits (122), Expect = 3e-10
 Identities = 18/54 (33%), Positives = 29/54 (53%)

Query: 20 PGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHS 73
          PGRVNLIGEH DY    V PMA++   ++  +  +   L   + +++K     +
Sbjct: 5  PGRVNLIGEHTDYTYGYVMPMAIDLYTIITAEKYDKVQLYSEHFNEEKTFTLDN 58

>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 180

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Mevalonate kinase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 44.8 bits (105), Expect = 6e-08
 Identities = 10/39 (25%), Positives = 15/39 (38%)

Query: 18 SVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENG 56
            P +V L GEH     Y    MA++    +  K  +  
Sbjct: 9  ETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQED 47

>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 180

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Mevalonate kinase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 34.1 bits (77), Expect = 5e-04
 Identities = 7/18 (38%), Positives = 8/18 (44%)

Query: 2  PGRVNLIGEHIDYCRYSV 19
          P +V L GEH     Y  
Sbjct: 11 PSKVILFGEHAVVYGYRA 28

>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Length = 194

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Phosphomevalonate kinase (PMK)
species: Streptococcus pneumoniae r6 [TaxId: 171101]

 Score = 34.5 bits (78), Expect = 4e-04
 Identities = 5/63 (7%), Positives = 16/63 (25%), Gaps = 1/63 (1%)

Query: 18 SVPGRVNLIGEH-IDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTVD 76
             G++   GE+ I           +   +      +++  +     D       +    
Sbjct: 5  KTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDSYRIYSDMFDFAVDLRPNPDYS 64

Query: 77 TFR 79
            +
Sbjct: 65 LIQ 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	79
d1piea1	205	Galactokinase {Lactococcus lactis [TaxId: 1358]}	99.88
d1wuua1	215	Galactokinase {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1kvka1	225	Mevalonate kinase {Rat (Rattus norvegicus) [TaxId:	99.71
d1kkha1	180	Mevalonate kinase {Archaeon Methanococcus jannasch	99.68
d1s4ea1	176	Galactokinase {Archaeon Pyrococcus furiosus [TaxId	99.66
d1k47a1	194	Phosphomevalonate kinase (PMK) {Streptococcus pneu	98.9
d1h72c1	163	Homoserine kinase {Archaeon Methanococcus jannasch	84.19

>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Galactokinase
species: Lactococcus lactis [TaxId: 1358]

Probab=99.88  E-value=1.5e-23  Score=141.63  Aligned_cols=75  Identities=25%  Similarity=0.377  Sum_probs=66.2

Q ss_pred             hhhhhhccee--E------EEEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEEEcCCCCcceEEeec
Q psy7885           4 RVNLIGEHID--Y------CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTV   75 (79)
Q Consensus         4 r~~~~~~~f~--y------~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~~~~~~~~l~l   75 (79)
                      +++.+.++|+  |      .+++|||||||+||||||+||+||||||++++++++++++|+++++.+.++++...++.+.
T Consensus         2 ~~~~~~~~f~~~f~~~~~~~~~~aPgRv~L~GeH~Dy~gg~vl~~AI~~~~~v~~~~~~d~~i~i~s~~~~~~~~~~~~~   81 (205)
T d1piea1           2 VLSALTEKFAEVFGDTKEVEYFFSPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKVKLYSENFPKLGVIEFDL   81 (205)
T ss_dssp             HHHHHHHHHHHHHSCCCSCEEEEEEEEEEEECCSCTTTTCEEEEEEEEEEEEEEEEECSSSEEEEEETTCGGGCCEEEET
T ss_pred             HHHHHHHHHHHHhCCCcceeEEEcceEEEEecCCeeECCCEeecccccceEEEEEecCCCCeeeeecCCCCccceeeccc
Confidence            3566778888  6      5789999999999999999999999999999999999999999999999887767788777


Q ss_pred             CCC
Q psy7885          76 DTF   78 (79)
Q Consensus        76 ~~~   78 (79)
                      .++
T Consensus        82 ~~~   84 (205)
T d1piea1          82 DEV   84 (205)
T ss_dssp             TCT
T ss_pred             ccc
Confidence            654

>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Galactokinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=9.7e-23  Score=137.20  Aligned_cols=63  Identities=33%  Similarity=0.451  Sum_probs=57.5

Q ss_pred             hhhhhhccee--E-----EEEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEEEcCCC
Q psy7885           4 RVNLIGEHID--Y-----CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQ   66 (79)
Q Consensus         4 r~~~~~~~f~--y-----~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~~   66 (79)
                      ++.++.+.|+  |     ++++|||||||+|||+||+||.||||||++++++++++++|+++++.+.+.+
T Consensus        11 ~~~~~~~~F~~~fg~~p~~i~~APGrv~L~GEH~dy~Gg~vl~~Ai~~~~~v~~~~~~d~~i~v~s~~~~   80 (215)
T d1wuua1          11 LLAEARRAFREEFGAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKDGLVSLLTTSEG   80 (215)
T ss_dssp             HHHHHHHHHHHHHSSCCSEEEEEEEEEEEECTTCGGGTCEEEEEEEEEEEEEEEEEETTCEEEEEECCSS
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEcceEEEEecCCeeeCCceEEeeeccCcEEEEEEecCCCEEEEEEccCC
Confidence            5666777888  6     7899999999999999999999999999999999999999999999987654

>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Mevalonate kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=4.2e-18  Score=113.68  Aligned_cols=53  Identities=25%  Similarity=0.265  Sum_probs=49.9

Q ss_pred             EEEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEEEcCCCC
Q psy7885          15 CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQK   67 (79)
Q Consensus        15 ~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~~~   67 (79)
                      .+++|||||+|+|||+||+||+||+|||++++++.+++++++.+++.+.+++.
T Consensus         6 ~~vsAPGKv~L~GEh~v~~G~~al~~ai~~~~~v~v~~~~~~~v~i~s~~~~~   58 (225)
T d1kvka1           6 LLVSAPGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNVGI   58 (225)
T ss_dssp             EEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECSSSEEEEEETTTTE
T ss_pred             EEEEeceEEEEEeCceeecCCCEEEEEecccEEEEEEECCCCeEEEEECCCCc
Confidence            46899999999999999999999999999999999999999999999988754

>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Mevalonate kinase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.68  E-value=3.5e-17  Score=106.53  Aligned_cols=61  Identities=21%  Similarity=0.277  Sum_probs=52.7

Q ss_pred             EEEcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEEEcCCCCcceEEeecCC
Q psy7885          15 CRYSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQKYDDYHSTVDT   77 (79)
Q Consensus        15 ~~~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~~~~~~~~l~l~~   77 (79)
                      ++++||||++|+|||+||+||.||++||++++++.+.+++++.+++.+.+.++  ...+++++
T Consensus         6 ~~~~aPgkv~L~GEh~~~~G~~~l~~aI~~~~~v~~~~~~~~~~~i~~~~~~~--~~~~~~~~   66 (180)
T d1kkha1           6 MIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQEDEIILNLNDLNK--SLGLNLNE   66 (180)
T ss_dssp             EEEEEEEEEEEECTTGGGGTCCEEEEEEEEEEEEEEEECCSSEEEEEETTTTE--EEEEETTT
T ss_pred             EEEEcCEEEEEEccCeEEcCCEEEEEEEeCEEEEEEEECCCCCcceeeecccc--eeeecchh
Confidence            46899999999999999999999999999999999999999999999887653  34444443

>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Galactokinase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.66  E-value=3.1e-18  Score=111.87  Aligned_cols=49  Identities=37%  Similarity=0.583  Sum_probs=37.7

Q ss_pred             EcCCceEEEeeeccccCCceeeeeeccccEEEEEEeCCCCcEEEEEcCCCC
Q psy7885          17 YSVPGRVNLIGEHIDYCRYSVCPMALEQNILVAFKCNENGDLNLYNIDDQK   67 (79)
Q Consensus        17 ~~APGRvnliGeHtDy~gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~~~~   67 (79)
                      ++|||||+|+|||+||+||+||||||++++++.++++++  +++.+.+++.
T Consensus         2 v~aPgRi~l~GeH~Dy~gg~vl~~AI~~~~~v~~~~~~~--~~i~~~~~~~   50 (176)
T d1s4ea1           2 VKSPGRVNLIGEHTDYTYGYVMPMAIDLYTIITAEKYDK--VQLYSEHFNE   50 (176)
T ss_dssp             EEEEEEEESSCCSCGGGTCEECEEEEEEEEEEC----CC--BCCCBTTTTC
T ss_pred             cccCEEEEEEccCeeeCCCEEEeEEeeeEEEEEEEcccc--eEEEeccCCc
Confidence            789999999999999999999999999999998887654  4455445433

>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Phosphomevalonate kinase (PMK)
species: Streptococcus pneumoniae r6 [TaxId: 171101]

Probab=98.90  E-value=8.2e-10  Score=71.39  Aligned_cols=49  Identities=8%  Similarity=-0.046  Sum_probs=42.5

Q ss_pred             EEcCCceEEEeeeccccC-CceeeeeeccccEEEEEEeCCCCcEEEEEcC
Q psy7885          16 RYSVPGRVNLIGEHIDYC-RYSVCPMALEQNILVAFKCNENGDLNLYNID   64 (79)
Q Consensus        16 ~~~APGRvnliGeHtDy~-gg~Vl~~Ai~~~~~v~~~~~~d~~v~i~s~~   64 (79)
                      .++||||+.|+|||.... |+.+|++||++++++.++++++..+...+..
T Consensus         3 ~v~apGK~iL~GE~aVv~~G~~ala~ai~~~~~v~v~~~~~~~i~~~~~~   52 (194)
T d1k47a1           3 AVKTCGKLYWAGEYAILEPGQLALIKDIPIYMRAEIAFSDSYRIYSDMFD   52 (194)
T ss_dssp             EEEEEEEEEEECTTGGGSTTCEEEEEEEEEEEEEEEEECSSCEEEEEC--
T ss_pred             EEEeCcEEEEEeeeEEecCCCeEEEEEEeceEEEEEEECCCceEEeeccc
Confidence            579999999999998875 9999999999999999999988887766544

>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Homoserine kinase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=84.19  E-value=0.39  Score=29.41  Aligned_cols=44  Identities=18%  Similarity=0.323  Sum_probs=34.0

Q ss_pred             EEEcCCceE-EEeeeccccCCceeeeeeccc-cEEEEEEeCCCCcEEEEEcC
Q psy7885          15 CRYSVPGRV-NLIGEHIDYCRYSVCPMALEQ-NILVAFKCNENGDLNLYNID   64 (79)
Q Consensus        15 ~~~~APGRv-nliGeHtDy~gg~Vl~~Ai~~-~~~v~~~~~~d~~v~i~s~~   64 (79)
                      +.+++|+.. || |     .|.-+|.+||+. ...+.+.++++..+++....
T Consensus         3 i~v~~Pas~aNl-g-----~GFD~lg~Al~~~~d~v~v~~~~~~~i~i~~~~   48 (163)
T d1h72c1           3 VRVKAPCTSANL-G-----VGFDVFGLCLKEPYDVIEVEAIDDKEIIIEVDD   48 (163)
T ss_dssp             EEEEEEEEEECT-G-----GGTTTEEEEEEEEEEEEEEEEESSSSEEEEESC
T ss_pred             EEEEEeccHHhc-c-----ccHhHhhhhhcCCccEEEEEECCCCeEEEEecC
Confidence            357899988 65 3     566799999985 67888999888888776543