Psyllid ID: psy7925

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470--
Protein Sequence
MDYVVQIMIGVANIFGETKYFTFENSTTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGIGCLMIATSVPVYMVFIAWRNKPKVFTKSVGECGNPGLMN
Secondary Structure (PSIPRED)
cEEEEEEEccccEEccccEEEEEEcccccHHHHHHHHHHHHHcccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccccccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHcHHccccccccccHHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccEEEEEEEEcccHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccHEEEEEHHHHHHHHHHHHHHHHHEccHHHHHHcccEEEEHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcHccccHHHHHHHcHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccccHEEEEEcHHHHHHHHHHHHHHHHEccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEcEHHHHHHHHHHHHHHHHHHcccHHHHHHHHEEEEccccEEEEEEEccccHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MDYVVQIMIGVANifgetkyftfensttdVTSIALSFYSGLFAYNGWNYLNFIIEELKdpivnlprAIYISCTLVTVVYVLTNVAFyttlspaevlnSEAVAVTFAnrifgpiawTLPVFVALStfggvngiiLTTSRlfyagacegqmpEILTMIQVtkmtptpaVLTIVTCEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATwtfanrifgpiawTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYttlspaevlnseatfanrifgpiawTLPVFVALStfggvngiiLTTSRlfyagacegqmpEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWLSIGVgvlclpvlrytqpdlprpikvhlIFPAAYLIASVFVTLVpmmaspvetgiGCLMIATSVPVYMVFIAWRnkpkvftksvgecgnpglmn
Flexible Loop (DISEMBL)
MDYVVQIMIGVANIFGETKYFTFENSTTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGIGCLMIATSVPVYMVFIAWRNKPKvftksvgecgnpglmn
Low Complexity Region (SEG)
MDYVVQIMIGVANIFGETKYFTFENSTTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCtlvtvvyvltnvAFYTTLSPAEVLNSEAVAVTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIIlttssvlvtvvyvltnvAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGIGCLMIATSVPVYMVFIAWRNKPKVFTKSVGECGNPGLMN
Disordered region (IsUnstruct)
**YVVQIMIGVANIFGETKYFTFENSTTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGIGCLMIATSVPVYMVFIAWRNKPKVFTKSV**********
Disordered Region (DISOPRED)
MDYVVQIMIGVANIFGETKYFTFENSTTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGIGCLMIATSVPVYMVFIAWRNKPKVFTKSVGECGNPG***
Disordered Region (DISEMBL)
MDYVVQIMIGVANIFGETKYFTFENSTTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGIGCLMIATSVPVYMVFIAWRNKPKVFTKSVGECGNPGLMN
Disordered Region (DISPRO)
MDYVVQIMIGVANIFGETKYFTFENSTTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGIGCLMIATSVPVYMVFIAWRNKPKVFTKSVGECGNPGLMN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDYVVQIMIGVANIFGETKYFTFENSTTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGIGCLMIATSVPVYMVFIAWRNKPKVFTKSVGECGNPGLMN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	472	2.2.26 [Sep-21-2011]
Q9N1Q4	535	Large neutral amino acids	yes	N/A	0.425	0.375	0.485	2e-48
Q9UHI5	535	Large neutral amino acids	yes	N/A	0.425	0.375	0.485	3e-48
Q5RAE3	535	Large neutral amino acids	yes	N/A	0.425	0.375	0.485	3e-48
Q9QXW9	531	Large neutral amino acids	yes	N/A	0.425	0.378	0.485	3e-48
Q9WVR6	533	Large neutral amino acids	yes	N/A	0.425	0.377	0.480	5e-48
Q9WTR6	502	Cystine/glutamate transpo	no	N/A	0.432	0.406	0.444	3e-46
Q7YQK4	503	Large neutral amino acids	no	N/A	0.430	0.403	0.427	4e-45
Q92536	515	Y+L amino acid transporte	no	N/A	0.385	0.353	0.429	1e-44
Q01650	507	Large neutral amino acids	no	N/A	0.400	0.372	0.442	2e-44
P63116	530	Asc-type amino acid trans	no	N/A	0.440	0.392	0.429	4e-43

>sp|Q9N1Q4|LAT2_RABIT Large neutral amino acids transporter small subunit 2 OS=Oryctolagus cuniculus GN=SLC7A8 PE=1 SV=1

 Score =  194 bits (492), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 99/204 (48%), Positives = 138/204 (67%), Gaps = 3/204 (1%)

Query: 260 LVTVVYVLTNVAFYTTLSPAEVLNSEA---TFANRIFGPIAWTLPVFVALSTFGGVNGII 316
           LVT VYV  NVA+ T +SP E+L S A   TF  ++ G +AW +P+ VALSTFGGVNG +
Sbjct: 275 LVTFVYVFANVAYITAMSPQELLASNAVAVTFGEKLLGVMAWIMPISVALSTFGGVNGSL 334

Query: 317 LTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFA 376
            T+SRLF+AGA EG +P +L MI V + TP PA+L     +LL L++S+++ LINYVGF 
Sbjct: 335 FTSSRLFFAGAREGHLPSVLAMIHVKRCTPIPALLFTCLSTLLMLVTSDMYTLINYVGFI 394

Query: 377 TWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGIGCL 436
            +L  GV V    VLR+ +PD+PRPIK++L+FP  YL+   F+ +  + + PV  GIG  
Sbjct: 395 NYLFYGVTVAGQIVLRWKKPDIPRPIKINLLFPIIYLLFWAFLLIFSLWSEPVVCGIGLA 454

Query: 437 MIATSVPVYMVFIAWRNKPKVFTK 460
           ++ T VPVY + + W++KPK F  
Sbjct: 455 IMLTGVPVYFLGVYWQHKPKCFND 478

Sodium-independent, high-affinity transport of small and large neutral amino acids such as alanine, serine, threonine, cysteine, phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Acts as an amino acid exchanger. Has higher affinity for L-phenylalanine than LAT1 but lower affinity for glutamine and serine. L-alanine is transported at physiological concentrations. Plays a role in basolateral (re)absorption of neutral amino acids. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. Plays an essential role in the reabsorption of neutral amino acids from the epithelial cells to the bloodstream in the kidney.
Oryctolagus cuniculus (taxid: 9986)

>sp|Q9UHI5|LAT2_HUMAN Large neutral amino acids transporter small subunit 2 OS=Homo sapiens GN=SLC7A8 PE=1 SV=1

 Score =  193 bits (490), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 99/204 (48%), Positives = 139/204 (68%), Gaps = 3/204 (1%)

Query: 260 LVTVVYVLTNVAFYTTLSPAEVLNSEA---TFANRIFGPIAWTLPVFVALSTFGGVNGII 316
           LVT VYV  NVA+ T +SP E+L S A   TF  ++ G +AW +P+ VALSTFGGVNG +
Sbjct: 275 LVTFVYVFANVAYVTAMSPQELLASNAVAVTFGEKLLGVMAWIMPISVALSTFGGVNGSL 334

Query: 317 LTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFA 376
            T+SRLF+AGA EG +P +L MI V + TP PA+L     +LL L++S+++ LINYVGF 
Sbjct: 335 FTSSRLFFAGAREGHLPSVLAMIHVKRCTPIPALLFTCISTLLMLVTSDMYTLINYVGFI 394

Query: 377 TWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGIGCL 436
            +L  GV V    VLR+ +PD+PRPIK++L+FP  YL+   F+ +  + + PV  GIG  
Sbjct: 395 NYLFYGVTVAGQIVLRWKKPDIPRPIKINLLFPIIYLLFWAFLLVFSLWSEPVVCGIGLA 454

Query: 437 MIATSVPVYMVFIAWRNKPKVFTK 460
           ++ T VPVY + + W++KPK F+ 
Sbjct: 455 IMLTGVPVYFLGVYWQHKPKCFSD 478

Sodium-independent, high-affinity transport of small and large neutral amino acids such as alanine, serine, threonine, cysteine, phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Acts as an amino acid exchanger. Has higher affinity for L-phenylalanine than LAT1 but lower affinity for glutamine and serine. L-alanine is transported at physiological concentrations. Plays a role in basolateral (re)absorption of neutral amino acids. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. Plays an essential role in the reabsorption of neutral amino acids from the epithelial cells to the bloodstream in the kidney.

Homo sapiens (taxid: 9606)

>sp|Q5RAE3|LAT2_PONAB Large neutral amino acids transporter small subunit 2 OS=Pongo abelii GN=SLC7A8 PE=2 SV=2

 Score =  193 bits (490), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 99/204 (48%), Positives = 139/204 (68%), Gaps = 3/204 (1%)

Query: 260 LVTVVYVLTNVAFYTTLSPAEVLNSEA---TFANRIFGPIAWTLPVFVALSTFGGVNGII 316
           LVT VYV  NVA+ T +SP E+L S A   TF  ++ G +AW +P+ VALSTFGGVNG +
Sbjct: 275 LVTFVYVFANVAYVTAMSPQELLASNAVAVTFGEKLLGVMAWIMPISVALSTFGGVNGSL 334

Query: 317 LTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFA 376
            T+SRLF+AGA EG +P +L MI V + TP PA+L     +LL L++S+++ LINYVGF 
Sbjct: 335 FTSSRLFFAGAREGHLPSVLAMIHVKRCTPIPALLFTCISTLLMLVTSDMYTLINYVGFI 394

Query: 377 TWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGIGCL 436
            +L  GV V    VLR+ +PD+PRPIK++L+FP  YL+   F+ +  + + PV  GIG  
Sbjct: 395 NYLFYGVTVAGQIVLRWKKPDIPRPIKINLLFPIIYLLFWAFLLVFSLWSEPVVCGIGLA 454

Query: 437 MIATSVPVYMVFIAWRNKPKVFTK 460
           ++ T VPVY + + W++KPK F+ 
Sbjct: 455 IMLTGVPVYFLGVYWQHKPKCFSD 478

Sodium-independent, high-affinity transport of small and large neutral amino acids such as alanine, serine, threonine, cysteine, phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Acts as an amino acid exchanger. Has higher affinity for L-phenylalanine than LAT1 but lower affinity for glutamine and serine. L-alanine is transported at physiological concentrations. Plays a role in basolateral (re)absorption of neutral amino acids. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. Plays an essential role in the reabsorption of neutral amino acids from the epithelial cells to the bloodstream in the kidney.

Pongo abelii (taxid: 9601)

>sp|Q9QXW9|LAT2_MOUSE Large neutral amino acids transporter small subunit 2 OS=Mus musculus GN=Slc7a8 PE=1 SV=1

 Score =  193 bits (490), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 99/204 (48%), Positives = 137/204 (67%), Gaps = 3/204 (1%)

Query: 260 LVTVVYVLTNVAFYTTLSPAEVLNSEA---TFANRIFGPIAWTLPVFVALSTFGGVNGII 316
           LVT VYV  N+A+ T +SP E+L S A   TF  ++ G +AW +P+ VALSTFGGVNG +
Sbjct: 274 LVTFVYVFANIAYVTAMSPQELLASNAVAVTFGEKLLGVMAWIMPISVALSTFGGVNGSL 333

Query: 317 LTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFA 376
            T+SRLF+AGA EG +P +L MI V + TP PA+L     +LL L++S+++ LINYVGF 
Sbjct: 334 FTSSRLFFAGAREGHLPSVLAMIHVKRCTPIPALLFTCLSTLLMLVTSDMYTLINYVGFI 393

Query: 377 TWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGIGCL 436
            +L  GV V    VLR+ +PD+PRPIKV L+FP  YL+   F+ +  + + PV  GIG  
Sbjct: 394 NYLFYGVTVAGQIVLRWKKPDIPRPIKVSLLFPIIYLLFWAFLLIFSLWSEPVVCGIGLA 453

Query: 437 MIATSVPVYMVFIAWRNKPKVFTK 460
           ++ T VPVY + + W++KPK F  
Sbjct: 454 IMLTGVPVYFLGVYWQHKPKCFND 477

Sodium-independent, high-affinity transport of small and large neutral amino acids such as alanine, serine, threonine, cysteine, phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Acts as an amino acid exchanger. Has higher affinity for L-phenylalanine than LAT1 but lower affinity for glutamine and serine. L-alanine is transported at physiological concentrations. Plays a role in basolateral (re)absorption of neutral amino acids. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. Plays an essential role in the reabsorption of neutral amino acids from the epithelial cells to the bloodstream in the kidney.

Mus musculus (taxid: 10090)

>sp|Q9WVR6|LAT2_RAT Large neutral amino acids transporter small subunit 2 OS=Rattus norvegicus GN=Slc7a8 PE=1 SV=1

 Score =  192 bits (488), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 98/204 (48%), Positives = 137/204 (67%), Gaps = 3/204 (1%)

Query: 260 LVTVVYVLTNVAFYTTLSPAEVLNSEA---TFANRIFGPIAWTLPVFVALSTFGGVNGII 316
           LVT VYV  N+A+ T +SP E+L S A   TF  ++ G +AW +P+ VALSTFGGVNG +
Sbjct: 276 LVTFVYVFANIAYVTAMSPQELLASNAVAVTFGEKLLGVMAWIMPISVALSTFGGVNGSL 335

Query: 317 LTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFA 376
            T+SRLF+AGA EG +P +L MI V + TP PA+L     +LL L++S+++ LINYVGF 
Sbjct: 336 FTSSRLFFAGAREGHLPSVLAMIHVKRCTPIPALLFTCLSTLLMLVTSDMYTLINYVGFI 395

Query: 377 TWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGIGCL 436
            +L  GV V    VLR+ +PD+PRPIK+ L+FP  YL+   F+ +  + + PV  GIG  
Sbjct: 396 NYLFYGVTVAGQIVLRWKKPDIPRPIKISLLFPIIYLLFWAFLLIFSLWSEPVVCGIGLA 455

Query: 437 MIATSVPVYMVFIAWRNKPKVFTK 460
           ++ T VPVY + + W++KPK F  
Sbjct: 456 IMLTGVPVYFLGVYWQHKPKCFND 479

Sodium-independent, high-affinity transport of small and large neutral amino acids such as alanine, serine, threonine, cysteine, phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Acts as an amino acid exchanger. Has higher affinity for L-phenylalanine than LAT1 but lower affinity for glutamine and serine. L-alanine is transported at physiological concentrations. Plays a role in basolateral (re)absorption of neutral amino acids. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. Plays an essential role in the reabsorption of neutral amino acids from the epithelial cells to the bloodstream in the kidney.

Rattus norvegicus (taxid: 10116)

>sp|Q9WTR6|XCT_MOUSE Cystine/glutamate transporter OS=Mus musculus GN=Slc7a11 PE=1 SV=1

 Score =  186 bits (472), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 92/207 (44%), Positives = 135/207 (65%), Gaps = 3/207 (1%)

Query: 257 SSVLVTVVYVLTNVAFYTTLSPAEVLNSEA---TFANRIFGPIAWTLPVFVALSTFGGVN 313
           S  ++TV YVLTNVA++TT+S  E+L S A   TF+ R+ G  +  +P+FVALS FG +N
Sbjct: 273 SMAIITVGYVLTNVAYFTTISAEELLQSSAVAVTFSERLLGKFSLAVPIFVALSCFGSMN 332

Query: 314 GIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYV 373
           G +   SRLFY  + EG +PEIL+MI V K TP PAV+ +  L+++ L S ++++L+N++
Sbjct: 333 GGVFAVSRLFYVASREGHLPEILSMIHVHKHTPLPAVIVLHPLTMVMLFSGDLYSLLNFL 392

Query: 374 GFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGI 433
            FA WL +G+ V  L  LRY +PD+ RP KV L  PA +    +F+ ++ + + P  TG+
Sbjct: 393 SFARWLFMGLAVAGLIYLRYKRPDMHRPFKVPLFIPALFSFTCLFMVVLSLYSDPFSTGV 452

Query: 434 GCLMIATSVPVYMVFIAWRNKPKVFTK 460
           G L+  T VP Y +FI W  KPK F +
Sbjct: 453 GFLITLTGVPAYYLFIVWDKKPKWFRR 479

Sodium-independent, high-affinity exchange of anionic amino acids with high specificity for anionic form of cystine and glutamate.

Mus musculus (taxid: 10090)

>sp|Q7YQK4|LAT1_RABIT Large neutral amino acids transporter small subunit 1 OS=Oryctolagus cuniculus GN=SLC7A5 PE=1 SV=1

 Score =  182 bits (462), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 88/206 (42%), Positives = 136/206 (66%), Gaps = 3/206 (1%)

Query: 260 LVTVVYVLTNVAFYTTLSPAEVLNSEA---TFANRIFGPIAWTLPVFVALSTFGGVNGII 316
           + T+VYVLTN+A++TTLSP ++L SEA    F N   G ++W +PVFV LS FG VNG +
Sbjct: 280 ICTLVYVLTNLAYFTTLSPEQMLASEAVAVDFGNHHLGVMSWVIPVFVGLSCFGSVNGSL 339

Query: 317 LTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFA 376
            T+SRLF+ G+ EG +P +L+MI    +TP P+++    ++LLY  S +IF++IN+  F 
Sbjct: 340 FTSSRLFFVGSREGHLPSVLSMIHPQLLTPVPSLVFTCAMTLLYAFSRDIFSVINFFSFF 399

Query: 377 TWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGIGCL 436
            WL + + ++ +  LRY +P+L RPIKV+L  P  +++A +F+  V    +PVE GIG  
Sbjct: 400 NWLCVALAIIGMMWLRYKKPELERPIKVNLALPVFFILACLFLIAVSFWKTPVECGIGFT 459

Query: 437 MIATSVPVYMVFIAWRNKPKVFTKSV 462
           +I + +PVY   + W+NKPK   + +
Sbjct: 460 IILSGLPVYFFGVWWKNKPKWLLQGI 485

Sodium-independent, high-affinity transport of large neutral amino acids such as phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Involved in cellular amino acid uptake. Acts as an amino acid exchanger. Involved in the transport of L-DOPA across the blood-brain barrier, and that of thyroid hormones triiodothyronine (T3) and thyroxine (T4) across the cell membrane. Plays a role in neuronal cell proliferation (neurogenesis) in brain. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. Mediates blood-to-retina L-leucine transport across the inner blood-retinal barrier which in turn may play a key role in maintaining large neutral amino acids as well as neurotransmitters in the neural retina. Acts as the major transporter of tyrosine in fibroblasts.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q92536|YLAT2_HUMAN Y+L amino acid transporter 2 OS=Homo sapiens GN=SLC7A6 PE=1 SV=3

 Score =  181 bits (458), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 91/212 (42%), Positives = 139/212 (65%), Gaps = 30/212 (14%)

Query: 16  GETKYFT--FENSTTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCT 73
           G +++F   FE S+ D+ +++L+ YS LF+Y+GW+ LNF+ EE+K+P  NLP AI IS  
Sbjct: 217 GHSEHFQDAFEGSSWDMGNLSLALYSALFSYSGWDTLNFVTEEIKNPERNLPLAIGISMP 276

Query: 74  LVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFANRIFGPIAWTLPVFVALSTFGGVNGII 133
           +VT++Y+LTNVA+YT L+ ++VL+S+AVAVTFA++ FG  +WT+P+ VALS FGG+N  I
Sbjct: 277 IVTLIYILTNVAYYTVLNISDVLSSDAVAVTFADQTFGMFSWTIPIAVALSCFGGLNASI 336

Query: 134 LTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQVTKMTPTP 193
             +SRLF+ G+ EG +P++L+MI + + TP PA+L   T                     
Sbjct: 337 FASSRLFFVGSREGHLPDLLSMIHIERFTPIPALLFNCT--------------------- 375

Query: 194 AVLTIAFLSLLYLMSSNIFALINYVGFATWTF 225
                  ++L+YL+  ++F LINY  F+ W F
Sbjct: 376 -------MALIYLIVEDVFQLINYFSFSYWFF 400

Involved in the sodium-independent uptake of dibasic amino acids and sodium-dependent uptake of some neutral amino acids. Requires co-expression with SLC3A2/4F2hc to mediate the uptake of arginine, leucine and glutamine. Also acts as an arginine/glutamine exchanger, following an antiport mechanism for amino acid transport, influencing arginine release in exchange for extracellular amino acids. Plays a role in nitric oxide synthesis in human umbilical vein endothelial cells (HUVECs) via transport of L-arginine. Involved in the transport of L-arginine in monocytes. Reduces uptake of ornithine in retinal pigment epithelial (RPE) cells.

Homo sapiens (taxid: 9606)

>sp|Q01650|LAT1_HUMAN Large neutral amino acids transporter small subunit 1 OS=Homo sapiens GN=SLC7A5 PE=1 SV=2

 Score =  180 bits (456), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 96/217 (44%), Positives = 134/217 (61%), Gaps = 28/217 (12%)

Query: 7   IMIGVANIFGETKYFTFENSTTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPR 66
           + IG  ++      F+FE +  DV +I L+ YSGLFAY GWNYLNF+ EE+ +P  NLP 
Sbjct: 217 VQIGKGDVSNLDPNFSFEGTKLDVGNIVLALYSGLFAYGGWNYLNFVTEEMINPYRNLPL 276

Query: 67  AIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFANRIFGPIAWTLPVFVALSTF 126
           AI IS  +VT+VYVLTN+A++TTLS  ++L+SEAVAV F N   G ++W +PVFV LS F
Sbjct: 277 AIIISLPIVTLVYVLTNLAYFTTLSTEQMLSSEAVAVDFGNYHLGVMSWIIPVFVGLSCF 336

Query: 127 GGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQV 186
           G VNG + T+SRLF+ G+ EG +P IL+MI                     P++L     
Sbjct: 337 GSVNGSLFTSSRLFFVGSREGHLPSILSMIH--------------------PQLL----- 371

Query: 187 TKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATW 223
              TP P+++    ++LLY  S +IF++IN+  F  W
Sbjct: 372 ---TPVPSLVFTCVMTLLYAFSKDIFSVINFFSFFNW 405

Sodium-independent, high-affinity transport of large neutral amino acids such as phenylalanine, tyrosine, leucine, arginine and tryptophan, when associated with SLC3A2/4F2hc. Involved in cellular amino acid uptake. Acts as an amino acid exchanger. Involved in the transport of L-DOPA across the blood-brain barrier, and that of thyroid hormones triiodothyronine (T3) and thyroxine (T4) across the cell membrane in tissues such as placenta. Plays a role in neuronal cell proliferation (neurogenesis) in brain. Involved in the uptake of methylmercury (MeHg) when administered as the L-cysteine or D,L-homocysteine complexes, and hence plays a role in metal ion homeostasis and toxicity. Involved in the cellular activity of small molecular weight nitrosothiols, via the stereoselective transport of L-nitrosocysteine (L-CNSO) across the transmembrane. May play an important role in high-grade gliomas. Mediates blood-to-retina L-leucine transport across the inner blood-retinal barrier which in turn may play a key role in maintaining large neutral amino acids as well as neurotransmitters in the neural retina. Acts as the major transporter of tyrosine in fibroblasts.

Homo sapiens (taxid: 9606)

>sp|P63116|AAA1_RAT Asc-type amino acid transporter 1 OS=Rattus norvegicus GN=Slc7a10 PE=2 SV=1

 Score =  176 bits (446), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 92/214 (42%), Positives = 137/214 (64%), Gaps = 6/214 (2%)

Query: 260 LVTVVYVLTNVAFYTTLSPAEVLNSEA---TFANRIFGPIAWTLPVFVALSTFGGVNGII 316
           LVT VY  TNVA++T +SP E+L+S A   TF  ++ G  +W +PV VALSTFGG+NG +
Sbjct: 281 LVTFVYTFTNVAYFTAMSPQELLSSNAVAVTFGEKLLGYFSWVMPVSVALSTFGGINGYL 340

Query: 317 LTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFA 376
            T+SRL ++GA EG +P  L MI V + TP PA+L     + + ++  + + LINYV F 
Sbjct: 341 FTSSRLCFSGAREGHLPSFLAMIHVRRCTPIPALLVCCGATAVIMLVGDTYTLINYVSFI 400

Query: 377 TWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGIGCL 436
            +L  GV +L L VLR+ +P L RPIKV+L+ P  YL+   F+ +   ++ P+  G+G +
Sbjct: 401 NYLCYGVTILGLLVLRWRRPALHRPIKVNLLVPVVYLVFWAFLLVFSFISEPMVCGVGII 460

Query: 437 MIATSVPVYMVFIAWRNKPKV---FTKSVGECGN 467
           +I T VP++ + + WR+KPK    FT+S+   G 
Sbjct: 461 IILTGVPIFFLGVFWRSKPKCVHRFTESMTRWGQ 494

Sodium-independent, high affinity transport of small neutral D- and L-amino acids and amino acid-related compounds. May play a role in the modulation of glutamatergic transmission through mobilization of D-serine at the glutamatergic synapse.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	472
307203849	543	Y+L amino acid transporter 2 [Harpegnath	0.449	0.390	0.746	1e-86
345478984	562	PREDICTED: Y+L amino acid transporter 2-	0.438	0.368	0.752	5e-86
118794426	497	AGAP001627-PA [Anopheles gambiae str. PE	0.438	0.416	0.752	2e-84
328779949	488	PREDICTED: Y+L amino acid transporter 2-	0.438	0.424	0.742	4e-84
193657083	487	PREDICTED: Y+L amino acid transporter 2-	0.438	0.425	0.728	5e-84
322789846	491	hypothetical protein SINV_09088 [Solenop	0.436	0.419	0.746	7e-84
383851814	545	PREDICTED: Y+L amino acid transporter 2-	0.436	0.377	0.746	1e-83
380024397	488	PREDICTED: Y+L amino acid transporter 2-	0.438	0.424	0.733	2e-83
332024928	564	Y+L amino acid transporter 2 [Acromyrmex	0.438	0.367	0.728	3e-83
170032454	378	cationic amino acid transporter [Culex q	0.438	0.547	0.723	1e-82

>gi|307203849|gb|EFN82785.1| Y+L amino acid transporter 2 [Harpegnathos saltator]

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 162/217 (74%), Positives = 188/217 (86%), Gaps = 5/217 (2%)

Query: 250 NGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEA---TFANRIFGPIAWTLPVFVAL 306
            GI ++ S  LVTVVYV TN+AFYTTLSP EVL SEA   TFANR+FG +AWT+PVFVAL
Sbjct: 256 RGIAISCS--LVTVVYVFTNMAFYTTLSPVEVLGSEAVAVTFANRLFGVMAWTIPVFVAL 313

Query: 307 STFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNI 366
           STFG VNGI+LT+SRLFYAGACEGQMPEILTMIQ++++TPTPAVL +A LS+LYL SS+I
Sbjct: 314 STFGAVNGILLTSSRLFYAGACEGQMPEILTMIQISRLTPTPAVLCMALLSMLYLCSSDI 373

Query: 367 FALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMA 426
            ALINYVGFATWLSIGV VLCLP LR++QPDLPRPIKV+LIFP  Y++A++FVT+VPM A
Sbjct: 374 SALINYVGFATWLSIGVSVLCLPWLRWSQPDLPRPIKVNLIFPVFYILATLFVTVVPMYA 433

Query: 427 SPVETGIGCLMIATSVPVYMVFIAWRNKPKVFTKSVG 463
           SP+ETG GCLMI +SVPVY  FIAW+NKPK F K VG
Sbjct: 434 SPIETGYGCLMILSSVPVYFAFIAWKNKPKFFQKGVG 470

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345478984|ref|XP_001606388.2| PREDICTED: Y+L amino acid transporter 2-like [Nasonia vitripennis]

 Score =  324 bits (831), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 158/210 (75%), Positives = 184/210 (87%), Gaps = 3/210 (1%)

Query: 257 SSVLVTVVYVLTNVAFYTTLSPAEVLNSEA---TFANRIFGPIAWTLPVFVALSTFGGVN 313
           S  LVT+VYVLTNVAFYTTLSP EVLNS+A   TFANR+FGP+AWT+PVFVALSTFG VN
Sbjct: 273 SCTLVTIVYVLTNVAFYTTLSPNEVLNSKAVAVTFANRLFGPMAWTIPVFVALSTFGAVN 332

Query: 314 GIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYV 373
           GI+LT+SRLFYAGACEGQMPEILTMIQ ++MTPTPAV+ +A LS+LYL SS+I ALINYV
Sbjct: 333 GILLTSSRLFYAGACEGQMPEILTMIQTSRMTPTPAVICMALLSMLYLCSSDIVALINYV 392

Query: 374 GFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGI 433
           GFATWLSIGV VLC+P LR+ QP+LPRPI+V+L FP  Y++ ++FVT+VPM +SPVETG 
Sbjct: 393 GFATWLSIGVSVLCVPWLRWAQPNLPRPIRVNLAFPIVYILCTLFVTIVPMYSSPVETGY 452

Query: 434 GCLMIATSVPVYMVFIAWRNKPKVFTKSVG 463
           GCLMI +SVPVY  FIAW+NKPK F KSVG
Sbjct: 453 GCLMILSSVPVYFAFIAWKNKPKFFQKSVG 482

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118794426|ref|XP_321470.3| AGAP001627-PA [Anopheles gambiae str. PEST] gi|116116291|gb|EAA00996.3| AGAP001627-PA [Anopheles gambiae str. PEST]

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 158/210 (75%), Positives = 180/210 (85%), Gaps = 3/210 (1%)

Query: 257 SSVLVTVVYVLTNVAFYTTLSPAEVLNSEA---TFANRIFGPIAWTLPVFVALSTFGGVN 313
           S  LVTVVYV TNV+FYT LSP EVL SEA   TFA+R+FG  AWT+PVFVALSTFG VN
Sbjct: 270 SCTLVTVVYVFTNVSFYTILSPEEVLGSEAVAVTFADRVFGMFAWTIPVFVALSTFGAVN 329

Query: 314 GIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYV 373
           GI+LT+SRLFYAGACEGQMPEILTMIQ+ ++TPTPAVL +A LS+LYL  S+IFALINYV
Sbjct: 330 GILLTSSRLFYAGACEGQMPEILTMIQIQRLTPTPAVLIMALLSMLYLTVSDIFALINYV 389

Query: 374 GFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGI 433
           GFATWLSIG  VLCLP LR+ QP L RPIKV+LIFP  YLIA+VFVT+VPM+ASPVETG 
Sbjct: 390 GFATWLSIGAAVLCLPWLRWKQPKLNRPIKVNLIFPILYLIATVFVTVVPMIASPVETGY 449

Query: 434 GCLMIATSVPVYMVFIAWRNKPKVFTKSVG 463
           GCLMI +S+PVY +FIAWRNKPK F +S+G
Sbjct: 450 GCLMILSSIPVYFIFIAWRNKPKWFNRSMG 479

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328779949|ref|XP_395239.4| PREDICTED: Y+L amino acid transporter 2-like [Apis mellifera]

 Score =  318 bits (815), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 156/210 (74%), Positives = 181/210 (86%), Gaps = 3/210 (1%)

Query: 257 SSVLVTVVYVLTNVAFYTTLSPAEVLNSEA---TFANRIFGPIAWTLPVFVALSTFGGVN 313
           S VLVT VYV  N+AFYTTLSP EVL SEA   TFANR+FG  AWT+PVFVALSTFG VN
Sbjct: 261 SCVLVTTVYVFANMAFYTTLSPVEVLGSEAVAVTFANRLFGMFAWTIPVFVALSTFGAVN 320

Query: 314 GIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYV 373
           GI+LT+SRLFYAGACEGQMPEILTMIQ++++TPTPAVL +  LS+LYL SS+IFALINYV
Sbjct: 321 GILLTSSRLFYAGACEGQMPEILTMIQISRLTPTPAVLCMTLLSMLYLCSSDIFALINYV 380

Query: 374 GFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGI 433
           GFATWLSIGV VLCLP LR++QP+L RPIKV+L FP  Y++A++FVT+VPM ASPVETG 
Sbjct: 381 GFATWLSIGVSVLCLPWLRWSQPNLSRPIKVNLFFPIIYILATLFVTIVPMYASPVETGY 440

Query: 434 GCLMIATSVPVYMVFIAWRNKPKVFTKSVG 463
           GCLMI +S+PVY +FIAW+NKPK F K VG
Sbjct: 441 GCLMILSSIPVYFIFIAWKNKPKFFQKGVG 470

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193657083|ref|XP_001945498.1| PREDICTED: Y+L amino acid transporter 2-like [Acyrthosiphon pisum]

 Score =  318 bits (814), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 153/210 (72%), Positives = 183/210 (87%), Gaps = 3/210 (1%)

Query: 257 SSVLVTVVYVLTNVAFYTTLSPAEVLNSEA---TFANRIFGPIAWTLPVFVALSTFGGVN 313
           S +LVTVVYV TN+AFYTTLSP EVL SEA   TFA+R++GP+AWT+PVFVALSTFG VN
Sbjct: 257 SCILVTVVYVFTNIAFYTTLSPQEVLTSEAVAVTFADRLYGPMAWTIPVFVALSTFGAVN 316

Query: 314 GIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYV 373
           GI+LT+SRLFYAGACEGQMP+ILTMIQ+ ++TPTPAV+ I  LSL+YL  SNI+ALINYV
Sbjct: 317 GILLTSSRLFYAGACEGQMPQILTMIQINRLTPTPAVICICLLSLIYLQISNIYALINYV 376

Query: 374 GFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGI 433
           GFATWLSIGV VLC+PVLR+TQPDL RPIKV++ FP  Y+ A++FVT++P++ASPVETG 
Sbjct: 377 GFATWLSIGVSVLCIPVLRFTQPDLERPIKVNMFFPVVYIGATLFVTIIPIIASPVETGY 436

Query: 434 GCLMIATSVPVYMVFIAWRNKPKVFTKSVG 463
           GCLMI TS+PVY VFI W+NKP +F K VG
Sbjct: 437 GCLMILTSIPVYGVFIFWKNKPMIFHKIVG 466

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322789846|gb|EFZ14993.1| hypothetical protein SINV_09088 [Solenopsis invicta]

 Score =  317 bits (813), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 156/209 (74%), Positives = 183/209 (87%), Gaps = 3/209 (1%)

Query: 257 SSVLVTVVYVLTNVAFYTTLSPAEVLNSEA---TFANRIFGPIAWTLPVFVALSTFGGVN 313
           S  LVT+VYV TN+AFYTTLSP EVL SEA   T+ANR+FG +AWT+PVFVALSTFG VN
Sbjct: 261 SCTLVTIVYVFTNMAFYTTLSPVEVLGSEAVAVTYANRLFGVMAWTIPVFVALSTFGAVN 320

Query: 314 GIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYV 373
           GI+LT+SRLFYAGACEGQMPEILTMIQ+ ++TP PAV+ +A LS+LYL SSNIF LINYV
Sbjct: 321 GILLTSSRLFYAGACEGQMPEILTMIQINRLTPAPAVICMALLSMLYLCSSNIFMLINYV 380

Query: 374 GFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGI 433
           GFATWLSIGV VLCLP LR++QP+L RPIKV+LIFP  Y++A++FVT+VPM ASPVETG 
Sbjct: 381 GFATWLSIGVSVLCLPWLRWSQPNLLRPIKVNLIFPVFYILATLFVTIVPMYASPVETGY 440

Query: 434 GCLMIATSVPVYMVFIAWRNKPKVFTKSV 462
           GCLMI TSVPVY+VFIAW+NKPK F ++V
Sbjct: 441 GCLMILTSVPVYLVFIAWKNKPKFFQRAV 469

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851814|ref|XP_003701426.1| PREDICTED: Y+L amino acid transporter 2-like [Megachile rotundata]

 Score =  317 bits (811), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 156/209 (74%), Positives = 181/209 (86%), Gaps = 3/209 (1%)

Query: 257 SSVLVTVVYVLTNVAFYTTLSPAEVLNSEA---TFANRIFGPIAWTLPVFVALSTFGGVN 313
           S VLVTVVYV  N+AFYTTLSP EVL SEA   TFANR+FG  +WT+PVFVALSTFG VN
Sbjct: 261 SCVLVTVVYVFANMAFYTTLSPVEVLGSEAVAVTFANRLFGVFSWTIPVFVALSTFGAVN 320

Query: 314 GIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYV 373
           GI+LT+SRLFYAGACEGQMPEILTMIQ +++TPTPAVL +A LS+LYL SS+IFALINYV
Sbjct: 321 GILLTSSRLFYAGACEGQMPEILTMIQTSRLTPTPAVLCMALLSMLYLCSSDIFALINYV 380

Query: 374 GFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGI 433
           GFATWLSIGV VLCLP LR+TQP+L RPIKV+L FP  Y++A++FVT+VPM ASPVETG 
Sbjct: 381 GFATWLSIGVSVLCLPWLRWTQPNLLRPIKVNLFFPIIYILATLFVTIVPMYASPVETGY 440

Query: 434 GCLMIATSVPVYMVFIAWRNKPKVFTKSV 462
           GCLMI +S+PVY +FI+W+NKPK F K V
Sbjct: 441 GCLMIFSSIPVYFIFISWKNKPKFFQKGV 469

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380024397|ref|XP_003695985.1| PREDICTED: Y+L amino acid transporter 2-like [Apis florea]

 Score =  315 bits (808), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 154/210 (73%), Positives = 180/210 (85%), Gaps = 3/210 (1%)

Query: 257 SSVLVTVVYVLTNVAFYTTLSPAEVLNSEA---TFANRIFGPIAWTLPVFVALSTFGGVN 313
           S VLVT VYV  N+AFYTTLSP EVL SEA   TFANR+FG  AW +PVFVALSTFG VN
Sbjct: 261 SCVLVTTVYVFANMAFYTTLSPVEVLGSEAVAVTFANRLFGMFAWMIPVFVALSTFGAVN 320

Query: 314 GIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYV 373
           GI+LT+SRLFYAGACEGQMPEILTMIQ++++TPTPAVL +  LS+LYL SS+IFALINYV
Sbjct: 321 GILLTSSRLFYAGACEGQMPEILTMIQISRLTPTPAVLCMTLLSMLYLCSSDIFALINYV 380

Query: 374 GFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGI 433
           GFATWLSIGV VLCLP LR++QP+L RPIKV+L FP  Y++A++FVT+VPM ASPVETG 
Sbjct: 381 GFATWLSIGVSVLCLPWLRWSQPNLSRPIKVNLFFPIIYILATLFVTIVPMYASPVETGY 440

Query: 434 GCLMIATSVPVYMVFIAWRNKPKVFTKSVG 463
           GCLMI +S+PVY +F+AW+NKPK F K VG
Sbjct: 441 GCLMILSSIPVYFIFVAWKNKPKFFQKGVG 470

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024928|gb|EGI65116.1| Y+L amino acid transporter 2 [Acromyrmex echinatior]

 Score =  315 bits (808), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 153/210 (72%), Positives = 184/210 (87%), Gaps = 3/210 (1%)

Query: 257 SSVLVTVVYVLTNVAFYTTLSPAEVLNSEA---TFANRIFGPIAWTLPVFVALSTFGGVN 313
           S  LVTVVYV TN+AFYTTLSP EVL SEA   T+ANR+FG +AWT+PVFVALSTFG VN
Sbjct: 261 SCTLVTVVYVFTNMAFYTTLSPVEVLGSEAVAVTYANRLFGVMAWTIPVFVALSTFGAVN 320

Query: 314 GIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYV 373
           GI+LT+SRLFYAGACEGQMPEILTMIQ++++TP PAV+ +A LS++YL SSNIF LINYV
Sbjct: 321 GILLTSSRLFYAGACEGQMPEILTMIQISRLTPAPAVICMALLSMVYLCSSNIFRLINYV 380

Query: 374 GFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGI 433
           GFATWLSIGV VLCLP LR++QP+L RPIKV+LIFP  Y++A++FVT+VPM ASPVETG 
Sbjct: 381 GFATWLSIGVSVLCLPWLRWSQPNLLRPIKVNLIFPIFYILATLFVTIVPMYASPVETGY 440

Query: 434 GCLMIATSVPVYMVFIAWRNKPKVFTKSVG 463
           GCLMI +S+PVY++FI+W+NKPK F + VG
Sbjct: 441 GCLMIFSSIPVYLLFISWKNKPKFFQQKVG 470

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170032454|ref|XP_001844096.1| cationic amino acid transporter [Culex quinquefasciatus] gi|167872566|gb|EDS35949.1| cationic amino acid transporter [Culex quinquefasciatus]

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 152/210 (72%), Positives = 179/210 (85%), Gaps = 3/210 (1%)

Query: 257 SSVLVTVVYVLTNVAFYTTLSPAEVLNSEA---TFANRIFGPIAWTLPVFVALSTFGGVN 313
           S  LVTVVYV TNV+FYT LSP EVL SEA   T+A+R+FG  AWT+PVFVALSTFG VN
Sbjct: 151 SCTLVTVVYVFTNVSFYTMLSPEEVLGSEAVAVTYADRVFGVFAWTIPVFVALSTFGAVN 210

Query: 314 GIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYV 373
           GI+LT+SRLFYAGACEGQMPEILTMIQ+ ++TPTPAVL +A LS+LYL SS+IFALINYV
Sbjct: 211 GILLTSSRLFYAGACEGQMPEILTMIQIQRLTPTPAVLIMALLSMLYLTSSDIFALINYV 270

Query: 374 GFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGI 433
           GFATWLSIG  VLCLP LR+ QP+LPRPIKV++ FP  YL+A++FV +VPM+ASP ETG 
Sbjct: 271 GFATWLSIGAAVLCLPWLRWKQPNLPRPIKVNIFFPIFYLLATIFVVVVPMIASPKETGY 330

Query: 434 GCLMIATSVPVYMVFIAWRNKPKVFTKSVG 463
           GCLMI +S+PVY +FIAWRNKPK F  ++G
Sbjct: 331 GCLMILSSIPVYFIFIAWRNKPKWFNHTMG 360

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	472
FB|FBgn0039844	505	CG1607 [Drosophila melanogaste	0.408	0.382	0.704	7.7e-71
UNIPROTKB|Q9UHI5	535	SLC7A8 "Large neutral amino ac	0.400	0.353	0.473	4.2e-47
UNIPROTKB|Q9N1Q4	535	SLC7A8 "Large neutral amino ac	0.398	0.351	0.476	4.2e-47
MGI|MGI:1355323	531	Slc7a8 "solute carrier family	0.398	0.354	0.481	5.3e-47
RGD|619904	533	Slc7a8 "solute carrier family	0.398	0.352	0.476	6.8e-47
WB|WBGene00000004	493	aat-3 [Caenorhabditis elegans	0.394	0.377	0.489	1.1e-46
WB|WBGene00000002	493	aat-1 [Caenorhabditis elegans	0.406	0.389	0.484	1.1e-46
UNIPROTKB|F1MYX6	528	SLC7A8 "Uncharacterized protei	0.406	0.363	0.471	1.8e-46
ZFIN|ZDB-GENE-030616-586	531	slc7a8b "solute carrier family	0.406	0.361	0.461	6.7e-45
UNIPROTKB|B4DKT4	430	SLC7A8 "cDNA FLJ53351, highly	0.400	0.439	0.473	1.2e-44

FB|FBgn0039844 CG1607 [Drosophila melanogaster (taxid:7227)]

 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 138/196 (70%), Positives = 164/196 (83%)

Query:   271 AFYTTLSPAEVLNSEA---TFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGA 327
             +FYT LSP EV+ S A   T+A R FG +AWT+PVFVALSTFG VNGI+LT+SRLFYAGA
Sbjct:   290 SFYTILSPDEVMGSSAVAVTYAERAFGMLAWTIPVFVALSTFGAVNGILLTSSRLFYAGA 349

Query:   328 CEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWLSIGVGVLC 387
               GQMPEILTMIQ+ + TPTPAVL +A LS+LYL  S+IFALINYVGFATWLSIGV VLC
Sbjct:   350 NNGQMPEILTMIQIQRFTPTPAVLAMALLSMLYLTVSDIFALINYVGFATWLSIGVAVLC 409

Query:   388 LPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGIGCLMIATSVPVYMV 447
             LP LR+ QP+LPRPI+V ++FP  YLIA++FVT+VPM ASPVETG G LMI +S+PVY+V
Sbjct:   410 LPWLRWAQPNLPRPIRVPMVFPIVYLIATIFVTVVPMYASPVETGYGILMILSSIPVYLV 469

Query:   448 FIAWRNKPKVFTKSVG 463
             FIAW+NKP  F K++G
Sbjct:   470 FIAWKNKPIWFQKTMG 485

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0003333 "amino acid transmembrane transport" evidence=ISS

UNIPROTKB|Q9UHI5 SLC7A8 "Large neutral amino acids transporter small subunit 2" [Homo sapiens (taxid:9606)]

 Score = 470 (170.5 bits), Expect = 4.2e-47, Sum P(2) = 4.2e-47
 Identities = 91/192 (47%), Positives = 131/192 (68%)

Query:   271 AFYTTLSPAEVLNSEA---TFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGA 327
             A+ T +SP E+L S A   TF  ++ G +AW +P+ VALSTFGGVNG + T+SRLF+AGA
Sbjct:   286 AYVTAMSPQELLASNAVAVTFGEKLLGVMAWIMPISVALSTFGGVNGSLFTSSRLFFAGA 345

Query:   328 CEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWLSIGVGVLC 387
              EG +P +L MI V + TP PA+L     +LL L++S+++ LINYVGF  +L  GV V  
Sbjct:   346 REGHLPSVLAMIHVKRCTPIPALLFTCISTLLMLVTSDMYTLINYVGFINYLFYGVTVAG 405

Query:   388 LPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGIGCLMIATSVPVYMV 447
               VLR+ +PD+PRPIK++L+FP  YL+   F+ +  + + PV  GIG  ++ T VPVY +
Sbjct:   406 QIVLRWKKPDIPRPIKINLLFPIIYLLFWAFLLVFSLWSEPVVCGIGLAIMLTGVPVYFL 465

Query:   448 FIAWRNKPKVFT 459
              + W++KPK F+
Sbjct:   466 GVYWQHKPKCFS 477

GO:0015179 "L-amino acid transmembrane transporter activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=EXP;ISS;IDA

GO:0015804 "neutral amino acid transport" evidence=ISS

GO:0042605 "peptide antigen binding" evidence=ISS

GO:0006865 "amino acid transport" evidence=IDA;TAS

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0009636 "response to toxic substance" evidence=NAS

GO:0055065 "metal ion homeostasis" evidence=NAS

GO:0015101 "organic cation transmembrane transporter activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0019534 "toxin transporter activity" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0006520 "cellular amino acid metabolic process" evidence=TAS

GO:0006810 "transport" evidence=TAS

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0050900 "leukocyte migration" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0015695 "organic cation transport" evidence=IDA

UNIPROTKB|Q9N1Q4 SLC7A8 "Large neutral amino acids transporter small subunit 2" [Oryctolagus cuniculus (taxid:9986)]

 Score = 470 (170.5 bits), Expect = 4.2e-47, Sum P(2) = 4.2e-47
 Identities = 91/191 (47%), Positives = 130/191 (68%)

Query:   271 AFYTTLSPAEVLNSEA---TFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGA 327
             A+ T +SP E+L S A   TF  ++ G +AW +P+ VALSTFGGVNG + T+SRLF+AGA
Sbjct:   286 AYITAMSPQELLASNAVAVTFGEKLLGVMAWIMPISVALSTFGGVNGSLFTSSRLFFAGA 345

Query:   328 CEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWLSIGVGVLC 387
              EG +P +L MI V + TP PA+L     +LL L++S+++ LINYVGF  +L  GV V  
Sbjct:   346 REGHLPSVLAMIHVKRCTPIPALLFTCLSTLLMLVTSDMYTLINYVGFINYLFYGVTVAG 405

Query:   388 LPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGIGCLMIATSVPVYMV 447
               VLR+ +PD+PRPIK++L+FP  YL+   F+ +  + + PV  GIG  ++ T VPVY +
Sbjct:   406 QIVLRWKKPDIPRPIKINLLFPIIYLLFWAFLLIFSLWSEPVVCGIGLAIMLTGVPVYFL 465

Query:   448 FIAWRNKPKVF 458
              + W++KPK F
Sbjct:   466 GVYWQHKPKCF 476

GO:0015171 "amino acid transmembrane transporter activity" evidence=IDA

GO:0015804 "neutral amino acid transport" evidence=IDA

GO:0016021 "integral to membrane" evidence=TAS

GO:0042605 "peptide antigen binding" evidence=IPI

MGI|MGI:1355323 Slc7a8 "solute carrier family 7 (cationic amino acid transporter, y+ system), member 8" [Mus musculus (taxid:10090)]

 Score = 469 (170.2 bits), Expect = 5.3e-47, Sum P(2) = 5.3e-47
 Identities = 92/191 (48%), Positives = 129/191 (67%)

Query:   271 AFYTTLSPAEVLNSEA---TFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGA 327
             A+ T +SP E+L S A   TF  ++ G +AW +P+ VALSTFGGVNG + T+SRLF+AGA
Sbjct:   285 AYVTAMSPQELLASNAVAVTFGEKLLGVMAWIMPISVALSTFGGVNGSLFTSSRLFFAGA 344

Query:   328 CEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWLSIGVGVLC 387
              EG +P +L MI V + TP PA+L     +LL L++S+++ LINYVGF  +L  GV V  
Sbjct:   345 REGHLPSVLAMIHVKRCTPIPALLFTCLSTLLMLVTSDMYTLINYVGFINYLFYGVTVAG 404

Query:   388 LPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGIGCLMIATSVPVYMV 447
               VLR+ +PD+PRPIKV L+FP  YL+   F+ +  + + PV  GIG  ++ T VPVY +
Sbjct:   405 QIVLRWKKPDIPRPIKVSLLFPIIYLLFWAFLLIFSLWSEPVVCGIGLAIMLTGVPVYFL 464

Query:   448 FIAWRNKPKVF 458
              + W++KPK F
Sbjct:   465 GVYWQHKPKCF 475

GO:0003333 "amino acid transmembrane transport" evidence=IDA

GO:0005275 "amine transmembrane transporter activity" evidence=ISA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO;ISA

GO:0006810 "transport" evidence=IEA

GO:0006865 "amino acid transport" evidence=ISO;ISA

GO:0015101 "organic cation transmembrane transporter activity" evidence=ISO

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISO

GO:0015179 "L-amino acid transmembrane transporter activity" evidence=IDA

GO:0015695 "organic cation transport" evidence=ISO

GO:0015807 "L-amino acid transport" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019534 "toxin transporter activity" evidence=ISO

GO:0055085 "transmembrane transport" evidence=ISA

RGD|619904 Slc7a8 "solute carrier family 7 (amino acid transporter light chain, L system), member 8" [Rattus norvegicus (taxid:10116)]

 Score = 468 (169.8 bits), Expect = 6.8e-47, Sum P(2) = 6.8e-47
 Identities = 91/191 (47%), Positives = 129/191 (67%)

Query:   271 AFYTTLSPAEVLNSEA---TFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGA 327
             A+ T +SP E+L S A   TF  ++ G +AW +P+ VALSTFGGVNG + T+SRLF+AGA
Sbjct:   287 AYVTAMSPQELLASNAVAVTFGEKLLGVMAWIMPISVALSTFGGVNGSLFTSSRLFFAGA 346

Query:   328 CEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWLSIGVGVLC 387
              EG +P +L MI V + TP PA+L     +LL L++S+++ LINYVGF  +L  GV V  
Sbjct:   347 REGHLPSVLAMIHVKRCTPIPALLFTCLSTLLMLVTSDMYTLINYVGFINYLFYGVTVAG 406

Query:   388 LPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGIGCLMIATSVPVYMV 447
               VLR+ +PD+PRPIK+ L+FP  YL+   F+ +  + + PV  GIG  ++ T VPVY +
Sbjct:   407 QIVLRWKKPDIPRPIKISLLFPIIYLLFWAFLLIFSLWSEPVVCGIGLAIMLTGVPVYFL 466

Query:   448 FIAWRNKPKVF 458
              + W++KPK F
Sbjct:   467 GVYWQHKPKCF 477

GO:0003333 "amino acid transmembrane transport" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006865 "amino acid transport" evidence=ISO

GO:0015101 "organic cation transmembrane transporter activity" evidence=IEA;ISO

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISO;ISS

GO:0015179 "L-amino acid transmembrane transporter activity" evidence=IEA;ISO

GO:0015695 "organic cation transport" evidence=ISO

GO:0015804 "neutral amino acid transport" evidence=ISS

GO:0015807 "L-amino acid transport" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0019534 "toxin transporter activity" evidence=IEA;ISO

GO:0042605 "peptide antigen binding" evidence=ISS

WB|WBGene00000004 aat-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 93/190 (48%), Positives = 131/190 (68%)

Query:   271 AFYTTLSPAEVLNSEAT---FANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGA 327
             A YT+++P E+L S A    FA + +G  A+ +P+FVA ST G  NG+ILT+SRLFY GA
Sbjct:   278 ALYTSITPDEMLASPAVAVLFAEKNYGWFAFCMPIFVACSTIGSANGVILTSSRLFYCGA 337

Query:   328 CEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLM-SSNIFALINYVGFATWLSIGVGVL 386
              EGQMP +LTM+  T  TP PAV+    LSLLYL+ S+NI++LINY+  + W++IG  +L
Sbjct:   338 REGQMPNVLTMVNKTTKTPIPAVILTGLLSLLYLLLSNNIYSLINYIQVSYWIAIGGAIL 397

Query:   387 CLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGIGCLMIATSVPVYM 446
              L   R T PD PR +K  ++FP  + I  V + LVP++ +P +T IG L++ + VPVY+
Sbjct:   398 ALFYFRKTMPDAPRAVKAPIVFPIIFFIGCVLLVLVPVLGNPKDTAIGILIMLSGVPVYL 457

Query:   447 VFIAWRNKPK 456
             +FIAW+ KPK
Sbjct:   458 IFIAWKGKPK 467

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019915 "lipid storage" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

WB|WBGene00000002 aat-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 95/196 (48%), Positives = 135/196 (68%)

Query:   271 AFYTTLSPAEVLNSEAT---FANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGA 327
             A YT +SP E+L S A    FAN+++G  A+ +P+ VA ST G  NG+I T++RLFY+GA
Sbjct:   278 ALYTAISPDEMLESPAVAVLFANKLYGKFAFIMPLCVACSTIGSANGVIFTSARLFYSGA 337

Query:   328 CEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSS-NIFALINYVGFATWLSIGVGVL 386
              EGQMP +LTMI     TP PAV+    LS+ YL++S +++ LINY+  + WL+IG  + 
Sbjct:   338 REGQMPAVLTMINKKTKTPIPAVILTGALSIAYLLASKDVYQLINYIQISYWLAIGTAIA 397

Query:   387 CLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGIGCLMIATSVPVYM 446
              L  LR T PD  RPIKV LI+PA +L   + + L+PM+A+P +TGIG L++ ++VPVY 
Sbjct:   398 ALFWLRRTMPDASRPIKVPLIWPAIFLAGCIALVLIPMVAAPRDTGIGLLIMLSAVPVYG 457

Query:   447 VFIAWRNKPKVFTKSV 462
             +FI W+NKPK F + +
Sbjct:   458 IFIGWKNKPKWFNEFI 473

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|F1MYX6 SLC7A8 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 465 (168.7 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
 Identities = 92/195 (47%), Positives = 130/195 (66%)

Query:   271 AFYTTLSPAEVLNSEA---TFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGA 327
             A+ T +SP E+L S A   TF  ++ G +AW +P+ VALSTFGGVNG + T+SRLF+AGA
Sbjct:   283 AYVTAMSPQELLASNAVAVTFGEKLLGVMAWIMPISVALSTFGGVNGSLFTSSRLFFAGA 342

Query:   328 CEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWLSIGVGVLC 387
              EG +P +L MI V + TP PA+L     +LL L++ +I+ LINYVGF  +L  GV V  
Sbjct:   343 REGHLPSVLAMIHVKRCTPIPALLFTCISTLLMLVTGDIYTLINYVGFINYLFYGVTVAG 402

Query:   388 LPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGIGCLMIATSVPVYMV 447
               VLR+ +PD+ RPIKV+L+FP  YL+   F+ +  + + PV  GIG  ++ T VPVY +
Sbjct:   403 QIVLRWKKPDINRPIKVNLLFPIIYLLFWAFLLVFSLWSEPVVCGIGLAIMVTGVPVYFL 462

Query:   448 FIAWRNKPKVFTKSV 462
              I W++KP+ F K +
Sbjct:   463 GIYWQHKPRCFNKFI 477

GO:0019534 "toxin transporter activity" evidence=IEA

GO:0015179 "L-amino acid transmembrane transporter activity" evidence=IEA

GO:0015101 "organic cation transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-030616-586 slc7a8b "solute carrier family 7 (cationic amino acid transporter, y+ system), member 8b" [Danio rerio (taxid:7955)]

 Score = 450 (163.5 bits), Expect = 6.7e-45, Sum P(2) = 6.7e-45
 Identities = 90/195 (46%), Positives = 126/195 (64%)

Query:   271 AFYTTLSPAEVLNSEA---TFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGA 327
             A+ T +SP E+L S A   TF  ++ G ++W +P+ VALSTFGGVNG + T+SRLF+AGA
Sbjct:   285 AYVTAMSPQELLASNAVAVTFGEKLLGVMSWIMPISVALSTFGGVNGSLFTSSRLFFAGA 344

Query:   328 CEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWLSIGVGVLC 387
              EG +P +L MI V + TP PA+L     +LL L +S+++ LINYVGF  +L  GV V  
Sbjct:   345 REGHLPSLLAMIHVKRCTPIPALLFTCISTLLMLCTSDMYTLINYVGFINYLFYGVTVAG 404

Query:   388 LPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGIGCLMIATSVPVYMV 447
               VLR  QPD+ RPIK+ L++P  YL+   F+ +  + + PV  GIG  ++ T VPVY +
Sbjct:   405 QIVLRIKQPDMHRPIKISLVWPVIYLLFWAFLLIFSLYSEPVVCGIGLAIMLTGVPVYFL 464

Query:   448 FIAWRNKPKVFTKSV 462
              + W NKP+ F   V
Sbjct:   465 GVYWDNKPQCFNTFV 479

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|B4DKT4 SLC7A8 "cDNA FLJ53351, highly similar to Large neutral amino acids transporter small subunit 2" [Homo sapiens (taxid:9606)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 91/192 (47%), Positives = 131/192 (68%)

Query:   271 AFYTTLSPAEVLNSEA---TFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGA 327
             A+ T +SP E+L S A   TF  ++ G +AW +P+ VALSTFGGVNG + T+SRLF+AGA
Sbjct:   181 AYVTAMSPQELLASNAVAVTFGEKLLGVMAWIMPISVALSTFGGVNGSLFTSSRLFFAGA 240

Query:   328 CEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWLSIGVGVLC 387
              EG +P +L MI V + TP PA+L     +LL L++S+++ LINYVGF  +L  GV V  
Sbjct:   241 REGHLPSVLAMIHVKRCTPIPALLFTCISTLLMLVTSDMYTLINYVGFINYLFYGVTVAG 300

Query:   388 LPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGIGCLMIATSVPVYMV 447
               VLR+ +PD+PRPIK++L+FP  YL+   F+ +  + + PV  GIG  ++ T VPVY +
Sbjct:   301 QIVLRWKKPDIPRPIKINLLFPIIYLLFWAFLLVFSLWSEPVVCGIGLAIMLTGVPVYFL 360

Query:   448 FIAWRNKPKVFT 459
              + W++KPK F+
Sbjct:   361 GVYWQHKPKCFS 372

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	472
TIGR00911	501	TIGR00911, 2A0308, L-type amino acid transporter	3e-60
TIGR00911	501	TIGR00911, 2A0308, L-type amino acid transporter	3e-57
pfam13520	425	pfam13520, AA_permease_2, Amino acid permease	6e-09
COG0531	466	COG0531, PotE, Amino acid transporters [Amino acid	2e-07
TIGR00909	429	TIGR00909, 2A0306, amino acid transporter	2e-06
TIGR00909	429	TIGR00909, 2A0306, amino acid transporter	4e-06
COG0531	466	COG0531, PotE, Amino acid transporters [Amino acid	5e-06
pfam13520	425	pfam13520, AA_permease_2, Amino acid permease	4e-05
TIGR00907	482	TIGR00907, 2A0304, amino acid permease (GABA perme	7e-05
TIGR00908	442	TIGR00908, 2A0305, ethanolamine permease	2e-04

>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter

 Score =  204 bits (521), Expect = 3e-60
 Identities = 91/210 (43%), Positives = 138/210 (65%), Gaps = 3/210 (1%)

Query: 252 IILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEA---TFANRIFGPIAWTLPVFVALST 308
           I +  S  +VT +YVLTN+A++T LSP E+L S A    F  R+ G ++W +P  V LS 
Sbjct: 270 IAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLGVMSWAMPALVGLSC 329

Query: 309 FGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFA 368
           FG VNG + ++SRLF+ G  EG +P +L+MI V ++TP P++L +  L+LL L S +I++
Sbjct: 330 FGSVNGSLFSSSRLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYS 389

Query: 369 LINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASP 428
           LIN + FA WL   + V  L  LRY +P++ RPIKV L FP  +L++ +F+ ++ + + P
Sbjct: 390 LINLISFANWLFNALAVAGLLWLRYKRPEMNRPIKVPLFFPVFFLLSCLFLIILSLYSPP 449

Query: 429 VETGIGCLMIATSVPVYMVFIAWRNKPKVF 458
           V  G+G +++ T VPVY   + W+NKPK F
Sbjct: 450 VGCGVGFIIMLTGVPVYFFGVWWQNKPKWF 479

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 501

>gnl|CDD|233179 TIGR00911, 2A0308, L-type amino acid transporter

 Score =  196 bits (501), Expect = 3e-57
 Identities = 90/203 (44%), Positives = 124/203 (61%), Gaps = 28/203 (13%)

Query: 23  FENSTTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLT 82
           FE + T    I L+FYSG++AY GWNYLNF+ EE+K+P   LP AI IS  +VT +YVLT
Sbjct: 227 FEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLT 286

Query: 83  NVAFYTTLSPAEVLNSEAVAVTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYA 142
           N+A++T LSP E+L S AVAV F  R+ G ++W +P  V LS FG VNG + ++SRLF+ 
Sbjct: 287 NIAYFTVLSPEELLASLAVAVDFGERLLGVMSWAMPALVGLSCFGSVNGSLFSSSRLFFV 346

Query: 143 GACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQVTKMTPTPAVLTIAFLS 202
           G  EG +P +L+MI V ++TP P++L + T                            L+
Sbjct: 347 GGREGHLPSLLSMIHVKRLTPLPSLLIVCT----------------------------LT 378

Query: 203 LLYLMSSNIFALINYVGFATWTF 225
           LL L S +I++LIN + FA W F
Sbjct: 379 LLMLFSGDIYSLINLISFANWLF 401

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 501

>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease

 Score = 57.7 bits (140), Expect = 6e-09
 Identities = 49/241 (20%), Positives = 91/241 (37%), Gaps = 20/241 (8%)

Query: 27  TTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAF 86
            +    + L     L+++ G+     + EE+K    ++P+A++I   +V V+Y+L N+ F
Sbjct: 184 PSGWPGVFLGLLIVLWSFGGFESAANVSEEVKKR--DVPKALFIGLLIVGVLYLLVNILF 241

Query: 87  YTTLSPAEVLNSEA---VAVTFANRIFGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYA 142
              +   E+        VA      + GP  A  + + +ALS  G VN  I+ +SR+  A
Sbjct: 242 LGVVPDDEIAKLSNLPSVAALLFEAVGGPWGAIIVVILLALSLLGAVNTAIVASSRVLEA 301

Query: 143 GACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQVTKMTPTPAVLTIAFLS 202
            A +G +P+    +     +P  A++           IL++I +     + A      L 
Sbjct: 302 LARDGVLPKFFAKVNKFG-SPVRALILTA--------ILSLILLLLFLLSGAAYN--ALL 350

Query: 203 LLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPV---FVALSTFGGVNGIILTTSSV 259
            L  +   +  L+  +G             I    PV    +    F  V          
Sbjct: 351 SLSAVGYLLVYLLLIIGLLILRKKRPDLPRIKGRWPVAILAILFILFLLVALFFPPGGPS 410

Query: 260 L 260
            
Sbjct: 411 T 411

Length = 425

>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 39/157 (24%), Positives = 68/157 (43%), Gaps = 5/157 (3%)

Query: 20  YFTFENSTTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVY 79
           +  F         I  +     FA+ G+  +  + EE+K+P   +PRAI +S  +V ++Y
Sbjct: 190 FAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILY 249

Query: 80  VLTNVAFYTTLSPAEVL---NSEAVAVTFANRIFGPIAWTLPVFVALSTFGGVNGIILTT 136
           +L  +     L   ++     S  +A+          A  + +   LS FG +   IL  
Sbjct: 250 ILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAV 309

Query: 137 SRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTC 173
           SR+ YA A +G +P+     +V     TP +  I+T 
Sbjct: 310 SRVLYAMARDGLLPKFFA--KVNPKGRTPVIALILTG 344

Length = 466

>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 40/203 (19%), Positives = 76/203 (37%), Gaps = 9/203 (4%)

Query: 251 GIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSE-----ATFANRIFGPIAWTLPVFVA 305
            IIL  S ++VT++YVL   A      P   L            +   G     L     
Sbjct: 231 AIIL--SLIVVTLLYVLVA-AVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAV 287

Query: 306 LSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSN 365
            S    +   I  TSR+ +A + +G +P  L+ +     TP  +++  +  + L      
Sbjct: 288 FSIASVMLAGIYGTSRVLFAMSRDGLLPGSLSKVHPKTGTPHMSIIIFSLTAALLASLVP 347

Query: 366 IFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMM 425
           +  L       T ++     + + +LR  +PD+ R  +  L+     L+ S  + L+ + 
Sbjct: 348 LEGLAELTSIGTLIAFAAVNVAVIILRRRRPDIQRAFRCPLVPVLPVLVVSYCIYLL-LN 406

Query: 426 ASPVETGIGCLMIATSVPVYMVF 448
             P  T    + +      Y ++
Sbjct: 407 LGPGTTVWFLVWMLLGSVFYFIY 429

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 429

>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 5/132 (3%)

Query: 42  FAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAV 101
           FA+ G+  ++   EE+K+P  ++P+AI +S  +VT++YVL   A      P   L     
Sbjct: 206 FAFIGFEAISTAAEEVKNPERDIPKAIILSLIVVTLLYVLVA-AVILGAVPWRQLAGSTA 264

Query: 102 AVTFA--NRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVT 159
            ++    +   G     L      S    +   I  TSR+ +A + +G +P  L+  +V 
Sbjct: 265 PLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGSLS--KVH 322

Query: 160 KMTPTPAVLTIV 171
             T TP +  I+
Sbjct: 323 PKTGTPHMSIII 334

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 429

>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 60/294 (20%), Positives = 107/294 (36%), Gaps = 29/294 (9%)

Query: 198 IAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGI----- 252
           +  + LL  +   +FA     G     F             + +A   F G   I     
Sbjct: 166 LKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAE 225

Query: 253 -----------ILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSE-----ATFANRIFGPI 296
                       +  S ++V ++Y+L  +     L   ++  S      A  A    G  
Sbjct: 226 EVKNPKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNW 285

Query: 297 -AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPA-----V 350
            A  + +   LS FG +   IL  SR+ YA A +G +P+    +     TP  A     +
Sbjct: 286 GAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPKGRTPVIALILTGI 345

Query: 351 LTIAFLSLLYLMSSNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPA 410
           +++  L L  L S    AL++    A  ++  +  L L VLR  +PDL RP ++ L    
Sbjct: 346 ISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPDLKRPFRLPLAPLI 405

Query: 411 AYL--IASVFVTLVPMMASPVETGIGCLMIATSVPVYMVFIAWRNKPKVFTKSV 462
             L  +A + +      +      +G ++IA  + +Y++      +        
Sbjct: 406 PILGIVAVLLLLYALYASGLPPLLLGVILIAGGIIIYLLVYLGLGRLLSAILIA 459

Length = 466

>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 44/179 (24%), Positives = 78/179 (43%), Gaps = 15/179 (8%)

Query: 259 VLVTVVYVLTNVAFYTTLSPAEVLNSE------ATFANRIFGPI-AWTLPVFVALSTFGG 311
           ++V V+Y+L N+ F   +   E+          A     + GP  A  + + +ALS  G 
Sbjct: 228 LIVGVLYLLVNILFLGVVPDDEIAKLSNLPSVAALLFEAVGGPWGAIIVVILLALSLLGA 287

Query: 312 VNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLL-----YLMSSNI 366
           VN  I+ +SR+  A A +G +P+    +     +P  A++  A LSL+      L  +  
Sbjct: 288 VNTAIVASSRVLEALARDGVLPKFFAKVNKFG-SPVRALILTAILSLILLLLFLLSGAAY 346

Query: 367 FALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHL--IFPAAYLIASVFVTLVP 423
            AL++       L   + ++ L +LR  +PDLPR        I    +++  +     P
Sbjct: 347 NALLSLSAVGYLLVYLLLIIGLLILRKKRPDLPRIKGRWPVAILAILFILFLLVALFFP 405

Length = 425

>gnl|CDD|233178 TIGR00907, 2A0304, amino acid permease (GABA permease)

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 41/176 (23%), Positives = 69/176 (39%), Gaps = 19/176 (10%)

Query: 15  FGETKYF--TFENSTTDVTSIALSFYSGL----FAYNGWNYLNFIIEELKDPIVNLPRAI 68
           F + K+    F NST        +F  GL    ++  G++    + EE+++P V  PRAI
Sbjct: 195 FNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEIENPEVVGPRAI 254

Query: 69  YISCTLVTVV--YVLTNVAFYTTLSPAEVLNSEA---VAVTFAN---RIFGPIAWTLPVF 120
            I    + +V  +    V F++      +++S     +A  F N      G I     + 
Sbjct: 255 -IGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLLCLIL 313

Query: 121 VALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTP--AVLTIVTCE 174
           V   +F      +   SR+ YA + +G +P      +V   T  P  AV       
Sbjct: 314 VT--SFFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWI 367

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 482

>gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 35/161 (21%), Positives = 63/161 (39%), Gaps = 7/161 (4%)

Query: 290 NRIFGPIAWTLPVFVALSTFGGV---NGIILTTSRLFYAGACEGQMPEILTMIQVTKMTP 346
             I+G   W       +  FG +   +GII   SR  +A +  G +PE L+ +   K  P
Sbjct: 267 ESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQIFALSRAGYLPESLSKVN-RKKAP 325

Query: 347 TPAVLTIAFLSLLYLMSSNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKV-- 404
             A++    +     ++     +I    F   +S  + +     LR  +PD+ RP +   
Sbjct: 326 VLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRRPDMERPYRTPG 385

Query: 405 HLIFPAAYLIASVFVTLVPMMASPVETGIGCLMIATSVPVY 445
            ++ P   L+ +  V LV          +G + I   +  Y
Sbjct: 386 GILTPGVALVLAC-VALVTGFYVDPRVVVGAVAIFVVLIGY 425

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily [Transport and binding proteins, Amino acids, peptides and amines]. Length = 442

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	472
KOG1287|consensus	479		100.0
TIGR00911	501	2A0308 L-type amino acid transporter.	100.0
PRK11357	445	frlA putative fructoselysine transporter; Provisio	99.97
TIGR00906	557	2A0303 cationic amino acid transport permease.	99.97
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	99.97
PRK10655	438	potE putrescine transporter; Provisional	99.97
TIGR00909	429	2A0306 amino acid transporter.	99.96
PRK11387	471	S-methylmethionine transporter; Provisional	99.96
PRK10644	445	arginine:agmatin antiporter; Provisional	99.96
PRK15049	499	L-asparagine permease; Provisional	99.96
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	99.95
TIGR00913	478	2A0310 amino acid permease (yeast).	99.95
PRK10197	446	gamma-aminobutyrate transporter; Provisional	99.95
PRK10836	489	lysine transporter; Provisional	99.95
PRK10746	461	putative transport protein YifK; Provisional	99.95
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	99.94
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	99.94
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	99.94
PRK11021	410	putative transporter; Provisional	99.94
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	99.94
PRK10249	458	phenylalanine transporter; Provisional	99.94
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	99.94
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	99.94
PRK10238	456	aromatic amino acid transporter; Provisional	99.94
PRK10580	457	proY putative proline-specific permease; Provision	99.94
TIGR00907	482	2A0304 amino acid permease (GABA permease).	99.92
COG0833	541	LysP Amino acid transporters [Amino acid transport	99.91
COG0531	466	PotE Amino acid transporters [Amino acid transport	99.91
KOG1286|consensus	554		99.9
TIGR00930	953	2a30 K-Cl cotransporter.	99.9
PRK15238	496	inner membrane transporter YjeM; Provisional	99.9
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	99.89
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	99.88
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	99.88
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	99.87
KOG1289|consensus	550		99.79
KOG1287|consensus	479		99.62
PRK10655	438	potE putrescine transporter; Provisional	99.55
PRK11387	471	S-methylmethionine transporter; Provisional	99.5
PRK10644	445	arginine:agmatin antiporter; Provisional	99.49
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	99.47
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	99.46
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	99.41
TIGR00906	557	2A0303 cationic amino acid transport permease.	99.38
PRK10580	457	proY putative proline-specific permease; Provision	99.36
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	99.35
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	99.33
PRK15049	499	L-asparagine permease; Provisional	99.33
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	99.32
PRK11021	410	putative transporter; Provisional	99.31
KOG2082|consensus	1075		99.29
PRK10746	461	putative transport protein YifK; Provisional	99.29
PRK10197	446	gamma-aminobutyrate transporter; Provisional	99.23
PRK10249	458	phenylalanine transporter; Provisional	99.22
TIGR00913	478	2A0310 amino acid permease (yeast).	99.21
PRK10238	456	aromatic amino acid transporter; Provisional	99.2
KOG1288|consensus	945		99.15
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	99.15
PRK10836	489	lysine transporter; Provisional	99.14
KOG1286|consensus	554		99.14
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	99.1
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	98.97
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	98.62
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	98.61
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	98.54
COG0833	541	LysP Amino acid transporters [Amino acid transport	98.52
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	98.45
TIGR00909	429	2A0306 amino acid transporter.	98.44
TIGR00911	501	2A0308 L-type amino acid transporter.	98.42
PRK11357	445	frlA putative fructoselysine transporter; Provisio	98.4
TIGR00907	482	2A0304 amino acid permease (GABA permease).	98.2
TIGR00930	953	2a30 K-Cl cotransporter.	98.1
COG0531	466	PotE Amino acid transporters [Amino acid transport	97.95
KOG2083|consensus	643		97.83
PRK15238	496	inner membrane transporter YjeM; Provisional	97.64
TIGR00912	359	2A0309 spore germination protein (amino acid perme	97.59
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	97.32
KOG1289|consensus	550		96.99
TIGR00814	397	stp serine transporter. The HAAAP family includes	96.86
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	96.83
TIGR00912	359	2A0309 spore germination protein (amino acid perme	96.4
PHA02764	399	hypothetical protein; Provisional	95.79
PRK15132	403	tyrosine transporter TyrP; Provisional	95.72
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	95.66
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	94.72
PF03845	320	Spore_permease: Spore germination protein; InterPr	93.31
PRK10483	414	tryptophan permease; Provisional	93.27
PF13906	51	AA_permease_C: C-terminus of AA_permease	92.65
PF02705	534	K_trans: K+ potassium transporter; InterPro: IPR00	92.34
PRK09664	415	tryptophan permease TnaB; Provisional	91.91
KOG1304|consensus	449		91.8
KOG1303|consensus	437		91.68
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	88.36
KOG1288|consensus	945		87.87
PRK13629	443	threonine/serine transporter TdcC; Provisional	86.98
COG3949	349	Uncharacterized membrane protein [Function unknown	85.18
PLN03074	473	auxin influx permease; Provisional	85.16
PHA02764	399	hypothetical protein; Provisional	84.05
PLN00149	779	potassium transporter; Provisional	83.9
PF05525	427	Branch_AA_trans: Branched-chain amino acid transpo	82.88
PLN00151	852	potassium transporter; Provisional	81.92
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	81.78
PRK15433	439	branched-chain amino acid transport system 2 carri	81.49
KOG2082|consensus	1075		81.41
TIGR00794	688	kup potassium uptake protein. Proteins of the KUP	81.22
PLN00148	785	potassium transporter; Provisional	80.73
PLN00150	779	potassium ion transporter family protein; Provisio	80.44

>KOG1287|consensus

Probab=100.00  E-value=1.1e-38  Score=334.65  Aligned_cols=276  Identities=50%  Similarity=0.910  Sum_probs=249.7

Q ss_pred             hhhhhHHHHHhhc-CCCcccc---ccCCCCChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHH
Q psy7925           3 YVVQIMIGVANIF-GETKYFT---FENSTTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVV   78 (472)
Q Consensus         3 ~~~~i~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~   78 (472)
                      .+++++.|++... ++++|+.   |+|+.++.+.+.+++++++|+|+|||+.++.+||+|||+||+|||+..++.++++.
T Consensus       172 l~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktLP~Ai~isi~lvt~i  251 (479)
T KOG1287|consen  172 LLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLPRAILISIPLVTVI  251 (479)
T ss_pred             HHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCccccchHHHHHhhHHHHHH
Confidence            4678888999777 7777654   89999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccChhhhhcchhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccC
Q psy7925          79 YVLTNVAFYTTLSPAEVLNSEAVAVTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQV  158 (472)
Q Consensus        79 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~  158 (472)
                      |+++++++..++++||+.++++++.+++++.+|..++.+++.+++|++|++|+.++..||+++++||||++|+.|+++|+
T Consensus       252 Yil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~  331 (479)
T KOG1287|consen  252 YVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFAWAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISV  331 (479)
T ss_pred             HHHhHhheeEecCHHHhcccchHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999888888888887774


Q ss_pred             CCCCchhHHHHhhhccCCcchhHhHhhhccCCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccc
Q psy7925         159 TKMTPTPAVLTIVTCEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLP  238 (472)
Q Consensus       159 ~~~tP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip  238 (472)
                      ++.                                                                             
T Consensus       332 ~~~-----------------------------------------------------------------------------  334 (479)
T KOG1287|consen  332 RRF-----------------------------------------------------------------------------  334 (479)
T ss_pred             CCC-----------------------------------------------------------------------------
Confidence            444                                                                             


Q ss_pred             hheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhh
Q psy7925         239 VFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILT  318 (472)
Q Consensus       239 ~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~  318 (472)
                                                                                                      
T Consensus       335 --------------------------------------------------------------------------------  334 (479)
T KOG1287|consen  335 --------------------------------------------------------------------------------  334 (479)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCC
Q psy7925         319 TSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDL  398 (472)
Q Consensus       319 ~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l~~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~  398 (472)
                                                +|..++++++.++++..+.++++++.+..++..++.+.+..++++++|+|+|+.
T Consensus       335 --------------------------TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~  388 (479)
T KOG1287|consen  335 --------------------------TPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPL  388 (479)
T ss_pred             --------------------------CChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence                                      555666667777777777889999999999999999999999999999999999


Q ss_pred             CCCcccchhHHHHHHHHHHHHHhhccccc-chhHHHHHHHHHHHHHHHHHHHHHhccCcccccc
Q psy7925         399 PRPIKVHLIFPAAYLIASVFVTLVPMMAS-PVETGIGCLMIATSVPVYMVFIAWRNKPKVFTKS  461 (472)
Q Consensus       399 ~~~~~~~~~~~il~iv~~l~li~~~~~~~-~~~~~i~~~v~~lgl~iy~~~~~~~~~~~~~~~~  461 (472)
                      +||+|.|+..|++..++|++++..|++.. +.+..+...+++.|+++|+...++++|+++.++.
T Consensus       389 ~rPiKvpl~~p~~~~~~~i~lvvip~~~~~~~~~~ig~~i~l~G~~~Y~~~i~~~~~p~~~~~~  452 (479)
T KOG1287|consen  389 PRPIKVPLFIPILFLLICIFLVVIPIISDFPVETLIGIGIILSGVPFYFLFIHWKKKPKWLRKI  452 (479)
T ss_pred             CCCEeeeeehHHHHHHHHHHHhheeeeecCCccchhHHHHHHHhhhhheEEEEecCCcHHHHHh
Confidence            99999999999999999999999999988 6668899999999999999888888877665544

>TIGR00911 2A0308 L-type amino acid transporter

Probab=100.00  E-value=2.3e-31  Score=285.42  Aligned_cols=252  Identities=47%  Similarity=0.921  Sum_probs=207.1

Q ss_pred             ccCCCCChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHH
Q psy7925          23 FENSTTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVA  102 (472)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~  102 (472)
                      |++..++..++..++..++|+|.|||.+++++||+|||+||+|||+..++.+++++|++.+++....+|.+++.+++++.
T Consensus       227 f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~  306 (501)
T TIGR00911       227 FEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVA  306 (501)
T ss_pred             cCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHHH
Confidence            33434567899999999999999999999999999999999999999999999999999999999999988887665444


Q ss_pred             HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHh
Q psy7925         103 VTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILT  182 (472)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~  182 (472)
                      ..+.++.+|...+.+                                                                 
T Consensus       307 ~~~~~~~~g~~~~~i-----------------------------------------------------------------  321 (501)
T TIGR00911       307 VDFGERLLGVMSWAM-----------------------------------------------------------------  321 (501)
T ss_pred             HHHHHHHhhhHHHHH-----------------------------------------------------------------
Confidence            444444433211222                                                                 


Q ss_pred             HhhhccCCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHH
Q psy7925         183 MIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVT  262 (472)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~  262 (472)
                                                                                                      
T Consensus       322 --------------------------------------------------------------------------------  321 (501)
T TIGR00911       322 --------------------------------------------------------------------------------  321 (501)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCC
Q psy7925         263 VVYVLTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVT  342 (472)
Q Consensus       263 vlY~~~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k  342 (472)
                                                            .+.++++.+++.++.+++.||++++++|||.+|++|+|+|+|
T Consensus       322 --------------------------------------~~~~~is~~~~~~~~~~~~sR~l~a~ardg~lP~~~~~v~~~  363 (501)
T TIGR00911       322 --------------------------------------PALVGLSCFGSVNGSLFSSSRLFFVGGREGHLPSLLSMIHVK  363 (501)
T ss_pred             --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHhcCC
Confidence                                                  234455677777888888888888888889999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccchhHHHHHHHHHHHHHhh
Q psy7925         343 KMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLV  422 (472)
Q Consensus       343 ~~tP~~al~~~~~i~~ii~l~~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~~~~~il~iv~~l~li~~  422 (472)
                      +++|++++++..+++++....++++.+.++.++..++.|.+..++.+++|+|+|+.+||||.|.+.+.++++.+++++..
T Consensus       364 ~~~P~~all~~~~i~~l~~~~~~~~~l~~~~~~~~~i~y~l~~~a~i~lR~~~p~~~rp~r~p~~~~~l~~~~~~~~~~~  443 (501)
T TIGR00911       364 RLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWLRYKRPEMNRPIKVPLFFPVFFLLSCLFLIIL  443 (501)
T ss_pred             CCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHheeccCCCCCCCccCchHHHHHHHHHHHHHhhh
Confidence            99999999999888887777778888888888899999999999999999999999999999988888888888888877


Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHhccCcc
Q psy7925         423 PMMASPVETGIGCLMIATSVPVYMVFIAWRNKPKV  457 (472)
Q Consensus       423 ~~~~~~~~~~i~~~v~~lgl~iy~~~~~~~~~~~~  457 (472)
                      +.+.++........+.++|+++|+...++++++++
T Consensus       444 ~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~~  478 (501)
T TIGR00911       444 SLYSPPVGCGVGFIIMLTGVPVYFFGVWWQNKPKW  478 (501)
T ss_pred             hhccCchhhHHHHHHHHHHHHHHHHHHHHHhccHh
Confidence            77777766677777888898888864555555444

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=99.97  E-value=2.8e-30  Score=272.83  Aligned_cols=242  Identities=17%  Similarity=0.295  Sum_probs=195.9

Q ss_pred             ChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHHHH
Q psy7925          29 DVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFANR  108 (472)
Q Consensus        29 ~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (472)
                      .+.++..++..++|+|.|||.+++++||+|||+||+|||+..++.+++++|++.+++.....|.+++.+++.+.....++
T Consensus       193 ~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~  272 (445)
T PRK11357        193 SFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTW  272 (445)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHH
Confidence            36788889999999999999999999999999999999999999999999999999999999999887665554433332


Q ss_pred             h--ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHhHhhh
Q psy7925         109 I--FGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQV  186 (472)
Q Consensus       109 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~~~~~  186 (472)
                      .  +|+..                                                                        
T Consensus       273 ~~~~g~~~------------------------------------------------------------------------  280 (445)
T PRK11357        273 IPALGSTA------------------------------------------------------------------------  280 (445)
T ss_pred             HHhcchHH------------------------------------------------------------------------
Confidence            1  22210                                                                        


Q ss_pred             ccCCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHH
Q psy7925         187 TKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYV  266 (472)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~  266 (472)
                                                                                                      
T Consensus       281 --------------------------------------------------------------------------------  280 (445)
T PRK11357        281 --------------------------------------------------------------------------------  280 (445)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCc
Q psy7925         267 LTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTP  346 (472)
Q Consensus       267 ~~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP  346 (472)
                                                    +.++.+.+.++.+++.++.+.+.+|++|+++|||.+||+|+|+|||+++|
T Consensus       281 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lp~~~~~v~~~~~tP  330 (445)
T PRK11357        281 ------------------------------GIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFFKCFGHVHPKYNTP  330 (445)
T ss_pred             ------------------------------HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCchHHHHHhCCCCCCC
Confidence                                          01112344556677778888889999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccch--hHHHHHHHHHHHHHhhcc
Q psy7925         347 TPAVLTIAFLSLLYLMSSNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHL--IFPAAYLIASVFVTLVPM  424 (472)
Q Consensus       347 ~~al~~~~~i~~ii~l~~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~~--~~~il~iv~~l~li~~~~  424 (472)
                      +++++++.++++++....+++++.+...+..++.|.+...+.+++|+|+ +.+||||.|.  ..+.++++.+++++..+.
T Consensus       331 ~~a~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~i~lr~~~-~~~~~~k~p~~~~~~~~~~~~~~~~~~~~~  409 (445)
T PRK11357        331 DVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRD-DYKPLWRTPAFGLMTTLAIASSLILVASTF  409 (445)
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHheeecCC-CCCCCcccCCchHHHHHHHHHHHHHHHHHH
Confidence            9999999999998888788899999999999999999988988887664 5678999997  678888888888877665


Q ss_pred             cccchhHH-HHHHHHHHHHHHHHHHHHHhc
Q psy7925         425 MASPVETG-IGCLMIATSVPVYMVFIAWRN  453 (472)
Q Consensus       425 ~~~~~~~~-i~~~v~~lgl~iy~~~~~~~~  453 (472)
                      ..++...+ ..+.+.++|+++|++++++++
T Consensus       410 ~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~  439 (445)
T PRK11357        410 VWAPIPGLICAVIVIATGLPAYAFWAKRSR  439 (445)
T ss_pred             HcCcHHHHHHHHHHHHHhhhHHhheechhh
Confidence            66665555 466778899988886655543

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=99.97  E-value=1.6e-29  Score=274.98  Aligned_cols=142  Identities=22%  Similarity=0.269  Sum_probs=116.1

Q ss_pred             CChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHHH
Q psy7925          28 TDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFAN  107 (472)
Q Consensus        28 ~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (472)
                      .++.+++.+...++|+|.|||.+++++||+|||+||+|||++.++++++++|++.+++.....|++++..+++....+..
T Consensus       228 ~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~  307 (557)
T TIGR00906       228 YGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEY  307 (557)
T ss_pred             cchHHHHHHHHHHHHHHhhHHHHHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999888766555554444


Q ss_pred             HhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHH
Q psy7925         108 RIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLT  169 (472)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~  169 (472)
                      ...++.+..+.+.++.+.++++++.++.+||++|+|||||++|++|+|+||+++||++++++
T Consensus       308 ~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~  369 (557)
T TIGR00906       308 VGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVV  369 (557)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHH
Confidence            44444456667777778888888888888888888888887777777777777776666553

>TIGR00908 2A0305 ethanolamine permease

Probab=99.97  E-value=3.4e-29  Score=264.18  Aligned_cols=244  Identities=16%  Similarity=0.215  Sum_probs=190.6

Q ss_pred             ChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHHHH
Q psy7925          29 DVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFANR  108 (472)
Q Consensus        29 ~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (472)
                      ++.++..++..++|+|.|+|.+++++||+|||+||+|||++.+..++.++|+...+......+.+++.+++.+.....++
T Consensus       189 ~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s~~~~~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~  268 (442)
T TIGR00908       189 AYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAILTLLALAAGILVVGPGAADAKELMGSNNPLPEALES  268 (442)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHH
Confidence            45688899999999999999999999999999999999999999999999998888777777888887666565555555


Q ss_pred             hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHhHhhhcc
Q psy7925         109 IFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQVTK  188 (472)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~~~~~~~  188 (472)
                      .++...+...                                                                      
T Consensus       269 ~~g~~~~~~~----------------------------------------------------------------------  278 (442)
T TIGR00908       269 IYGGSTWMSQ----------------------------------------------------------------------  278 (442)
T ss_pred             HhCCchHHHH----------------------------------------------------------------------
Confidence            5443211110                                                                      


Q ss_pred             CCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHH
Q psy7925         189 MTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLT  268 (472)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~  268 (472)
                                                                                                      
T Consensus       279 --------------------------------------------------------------------------------  278 (442)
T TIGR00908       279 --------------------------------------------------------------------------------  278 (442)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchh
Q psy7925         269 NVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTP  348 (472)
Q Consensus       269 ~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~  348 (472)
                                                    ++.+..+++.+++.++.+++.+|++++|+|||.+||+|+|+| |+++|++
T Consensus       279 ------------------------------~i~~~~~~~~~~s~~~~~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~  327 (442)
T TIGR00908       279 ------------------------------FVNLVGLFGLIASFHGIIYGYSRQIFALSRAGYLPESLSKVN-RKKAPVL  327 (442)
T ss_pred             ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHhC-CCCCcHH
Confidence                                          011334455667778888889999999999999999999999 9999999


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccch--hHHHHHHHHHHHHHhhcccc
Q psy7925         349 AVLTIAFLSLLYLMSSNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHL--IFPAAYLIASVFVTLVPMMA  426 (472)
Q Consensus       349 al~~~~~i~~ii~l~~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~~--~~~il~iv~~l~li~~~~~~  426 (472)
                      +++++.+++++..+..+.+.+.++.++..++.|.+...+.+++|+|+|+.+||||.|.  +.++++++.+++.+....+.
T Consensus       328 Ail~~~~i~~~~~l~~~~~~l~~~~~~~~~~~y~~~~~a~i~lr~~~p~~~rp~~~p~~~~~~~l~~~~~~~~l~~~~~~  407 (442)
T TIGR00908       328 AIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRRPDMERPYRTPGGILTPGVALVLACVALVTGFYV  407 (442)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCCCcchHHHHHHHHHHHHHHHHHHc
Confidence            9999999998888777777788888999999999999999999999999999999985  78888888887776665554


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhc
Q psy7925         427 SPVETGIGCLMIATSVPVYMVFIAWRN  453 (472)
Q Consensus       427 ~~~~~~i~~~v~~lgl~iy~~~~~~~~  453 (472)
                      .+........+..+..+.|+.++|+|+
T Consensus       408 ~~~~~~~~~~~~~~~~~~~~l~~~~~~  434 (442)
T TIGR00908       408 DPRVVVGAVAIFVVLIGYYFLYSRHHL  434 (442)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhhhhchh
Confidence            443333334445555555655544333

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>PRK10655 potE putrescine transporter; Provisional

Probab=99.97  E-value=2.4e-28  Score=257.47  Aligned_cols=235  Identities=18%  Similarity=0.226  Sum_probs=176.2

Q ss_pred             hhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHHHHh
Q psy7925          30 VTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFANRI  109 (472)
Q Consensus        30 ~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (472)
                      +.++..++..++|+|.|||.+++++||+|||+||+|||++.+..+++++|++.+.......|.+|+.+++.+.....++.
T Consensus       188 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~  267 (438)
T PRK10655        188 FSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQM  267 (438)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhhccchHHHHHHHH
Confidence            46888889999999999999999999999999999999999999999999999988888889999877666666666677


Q ss_pred             ccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHhHhhhcc
Q psy7925         110 FGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQVTK  188 (472)
Q Consensus       110 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~~~~~~~  188 (472)
                      +++. +..+...++++.+++.++.+                                                       
T Consensus       268 ~g~~~~~~~~~~~~is~~~~~~~~~-------------------------------------------------------  292 (438)
T PRK10655        268 FNPTVGKIVMALMVMSCCGSLLGWQ-------------------------------------------------------  292 (438)
T ss_pred             cChhHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------------
Confidence            7764 34555444445555555544                                                       


Q ss_pred             CCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHH
Q psy7925         189 MTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLT  268 (472)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~  268 (472)
                                                                                                      
T Consensus       293 --------------------------------------------------------------------------------  292 (438)
T PRK10655        293 --------------------------------------------------------------------------------  292 (438)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchh
Q psy7925         269 NVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTP  348 (472)
Q Consensus       269 ~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~  348 (472)
                                                                      .+.+|++|+++|||++||+|+|+| |+++|++
T Consensus       293 ------------------------------------------------~~~sR~~~~~a~dg~lP~~~~~v~-~~~tP~~  323 (438)
T PRK10655        293 ------------------------------------------------FTIAQVFKSSADEGYFPKIFSRVT-KVDAPVQ  323 (438)
T ss_pred             ------------------------------------------------HHHHHHHHHHhcCCchhHHHHhhC-cCCCCHH
Confidence                                                            445555555555555555666665 4566666


Q ss_pred             HHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccchhHHHHHHHHHHHHHh
Q psy7925         349 AVLTIAFLSLLYLMS-------SNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTL  421 (472)
Q Consensus       349 al~~~~~i~~ii~l~-------~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~~~~~il~iv~~l~li~  421 (472)
                      +++++.+++.++.+.       ..++.+.++.++..++.|.+...+.+++|+|+|+.+||+|.+..++.++.+.+++.++
T Consensus       324 all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (438)
T PRK10655        324 GMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVANVPPSKAKVANFIAFVGALYSFYALY  403 (438)
T ss_pred             HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHH
Confidence            666666655544331       3577888999999999999999999999998888889999887778888877776543


Q ss_pred             hcccccchh-HHHHHHHHHHHHHHHHHHHHHh
Q psy7925         422 VPMMASPVE-TGIGCLMIATSVPVYMVFIAWR  452 (472)
Q Consensus       422 ~~~~~~~~~-~~i~~~v~~lgl~iy~~~~~~~  452 (472)
                          ..+.. ......+.++++++|.+++||+
T Consensus       404 ----~~~~~~~~~~~~~~~~g~~~y~~~~~~~  431 (438)
T PRK10655        404 ----SSGEEAMLYGSIVTFLGWTLYGLISPRF  431 (438)
T ss_pred             ----HhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                33433 4556778888998887654443

>TIGR00909 2A0306 amino acid transporter

Probab=99.96  E-value=7.2e-28  Score=252.60  Aligned_cols=236  Identities=19%  Similarity=0.275  Sum_probs=193.5

Q ss_pred             CCChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHH
Q psy7925          27 TTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFA  106 (472)
Q Consensus        27 ~~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (472)
                      +.+..++..++...+|+|.|||.+.+++||+|||+|++|||+..+..++.++|++.+.+.....|.+++.+++.+.....
T Consensus       191 ~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~  270 (429)
T TIGR00909       191 PMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVG  270 (429)
T ss_pred             CCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHH
Confidence            35677899999999999999999999999999999999999999999999999999999998889888876665544433


Q ss_pred             HHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHhHhhh
Q psy7925         107 NRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQV  186 (472)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~~~~~  186 (472)
                      ++..++..                                                                        
T Consensus       271 ~~~~~~~~------------------------------------------------------------------------  278 (429)
T TIGR00909       271 YDLGQGIG------------------------------------------------------------------------  278 (429)
T ss_pred             HHhCchHH------------------------------------------------------------------------
Confidence            33322211                                                                        


Q ss_pred             ccCCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHH
Q psy7925         187 TKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYV  266 (472)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~  266 (472)
                                                                                                      
T Consensus       279 --------------------------------------------------------------------------------  278 (429)
T TIGR00909       279 --------------------------------------------------------------------------------  278 (429)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCc
Q psy7925         267 LTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTP  346 (472)
Q Consensus       267 ~~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP  346 (472)
                                                    +.++.+.++++.+++.++++.+.+|.+++++|||.+||+|+|+|||+++|
T Consensus       279 ------------------------------~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~~P  328 (429)
T TIGR00909       279 ------------------------------GLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGSLSKVHPKTGTP  328 (429)
T ss_pred             ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCCCCCc
Confidence                                          01123556677788888888889999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccch--hHHHHHHHHHHHHHhhcc
Q psy7925         347 TPAVLTIAFLSLLYLMSSNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHL--IFPAAYLIASVFVTLVPM  424 (472)
Q Consensus       347 ~~al~~~~~i~~ii~l~~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~~--~~~il~iv~~l~li~~~~  424 (472)
                      +++++++.+++++......++.+.++.++..++.|.+..++.+++|+|+|+.+||+|.|.  +.+.+.++.++++.+.  
T Consensus       329 ~~a~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  406 (429)
T TIGR00909       329 HMSIIIFSLTAALLASLVPLEGLAELTSIGTLIAFAAVNVAVIILRRRRPDIQRAFRCPLVPVLPVLVVSYCIYLLLN--  406 (429)
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcchHHHHHHHHHHHHHHHH--
Confidence            999999999988887777788999999999999999999999999999999999999887  4555555556655432  


Q ss_pred             cccchhHHHHHHHHHHHHHHHHH
Q psy7925         425 MASPVETGIGCLMIATSVPVYMV  447 (472)
Q Consensus       425 ~~~~~~~~i~~~v~~lgl~iy~~  447 (472)
                       ..+........+.++|.+.|..
T Consensus       407 -~~~~~~~~~~~~~~~g~~~y~~  428 (429)
T TIGR00909       407 -LGPGTTVWFLVWMLLGSVFYFI  428 (429)
T ss_pred             -ccHHHHHHHHHHHHHHHHHHHc
Confidence             3455666777889999987753

>PRK11387 S-methylmethionine transporter; Provisional

Probab=99.96  E-value=2.1e-27  Score=253.08  Aligned_cols=138  Identities=15%  Similarity=0.226  Sum_probs=105.9

Q ss_pred             CChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHHH
Q psy7925          28 TDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFAN  107 (472)
Q Consensus        28 ~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (472)
                      ++..++..++..++|+|.|||.+++++||+|||+||+|||+..+..++.++|++.+++.....|.++...++.+.....+
T Consensus       203 ~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~  282 (471)
T PRK11387        203 HGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFE  282 (471)
T ss_pred             ccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHH
Confidence            34568899999999999999999999999999999999999999999999999999999888898887666666666666


Q ss_pred             Hhccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhH
Q psy7925         108 RIFGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPA  166 (472)
Q Consensus       108 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~  166 (472)
                      +..++. ...+.+.++++.+++.|+.++..||.+|+|||||++|++|+|+|+ ++||+++
T Consensus       283 ~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~f~~~~~-~~~P~~A  341 (471)
T PRK11387        283 KVGIPYAADIFNFVILTAILSAANSGLYASGRMLWSLSNEGTLPACFARLTK-RGIPLTA  341 (471)
T ss_pred             HcCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCcCHHHHHhCC-CCCcHHH
Confidence            655543 456666666777777777666666666666666666655555552 3444444

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=99.96  E-value=9.9e-27  Score=245.99  Aligned_cols=237  Identities=17%  Similarity=0.187  Sum_probs=172.2

Q ss_pred             CChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHHH
Q psy7925          28 TDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFAN  107 (472)
Q Consensus        28 ~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (472)
                      +++.++..++..++|+|.|||.+++++||+|||+||+|||+..++.+++++|++.+++....+|++|+..++.+.....+
T Consensus       188 ~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~  267 (445)
T PRK10644        188 GTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAAR  267 (445)
T ss_pred             chHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHHHH
Confidence            35678888899999999999999999999999999999999999999999999999999999999888776667666667


Q ss_pred             Hhccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHhHhhh
Q psy7925         108 RIFGPIA-WTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQV  186 (472)
Q Consensus       108 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~~~~~  186 (472)
                      +.+|+.. ..+.+.++++.++++++.+..                                                   
T Consensus       268 ~~~g~~~~~~v~~~~~~s~~~~~~~~~~~---------------------------------------------------  296 (445)
T PRK10644        268 MALGDTAGAIVSFCAAAGCLGSLGGWTLL---------------------------------------------------  296 (445)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------------
Confidence            7776643 444444455555555554444                                                   


Q ss_pred             ccCCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHH
Q psy7925         187 TKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYV  266 (472)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~  266 (472)
                                                                                                      
T Consensus       297 --------------------------------------------------------------------------------  296 (445)
T PRK10644        297 --------------------------------------------------------------------------------  296 (445)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCc
Q psy7925         267 LTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTP  346 (472)
Q Consensus       267 ~~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP  346 (472)
                                                                          .+|..++++|||.+||+|+|+| |+++|
T Consensus       297 ----------------------------------------------------~sr~~~a~ardg~lP~~~~~v~-~~~tP  323 (445)
T PRK10644        297 ----------------------------------------------------AGQTAKAAADDGLFPPIFARVN-KAGTP  323 (445)
T ss_pred             ----------------------------------------------------HHHHHHHHHhCCCccHHHHhhC-cCCCC
Confidence                                                                4555555555555555555665 35666


Q ss_pred             hhHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccchhHHHHHHHHHHHH
Q psy7925         347 TPAVLTIAFLSLLYLMS-------SNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFV  419 (472)
Q Consensus       347 ~~al~~~~~i~~ii~l~-------~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~~~~~il~iv~~l~l  419 (472)
                      +++++++.+++.++.+.       ..++.+.++.++..++.|.+...+.+++|+|+++.++|+  ..+.+.++++.|+++
T Consensus       324 ~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~p~--~~~~~~~~~~~~~~~  401 (445)
T PRK10644        324 VAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPA--YLAVTLIAFVYCIWA  401 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccc--hhHHHHHHHHHHHHH
Confidence            66666666666554432       247778899999999999999999999988876544543  236788888888888


Q ss_pred             HhhcccccchhHHHHHHHHHHHHHHHHHHHHHhc
Q psy7925         420 TLVPMMASPVETGIGCLMIATSVPVYMVFIAWRN  453 (472)
Q Consensus       420 i~~~~~~~~~~~~i~~~v~~lgl~iy~~~~~~~~  453 (472)
                      ++.   ..+........+.+++.++|+..++||+
T Consensus       402 ~~~---~~~~~~~~~~~~~~~~~~~y~~~~~~~~  432 (445)
T PRK10644        402 VVG---SGAKEVMWSFVTLMVITAFYALNYNRLH  432 (445)
T ss_pred             HHH---hhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            653   2333444555567777777765544433

>PRK15049 L-asparagine permease; Provisional

Probab=99.96  E-value=1.5e-26  Score=248.59  Aligned_cols=130  Identities=19%  Similarity=0.248  Sum_probs=98.7

Q ss_pred             CChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHHH
Q psy7925          28 TDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFAN  107 (472)
Q Consensus        28 ~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (472)
                      +++.+++.++..++|+|.|+|.+++++||+|||+||+|||+..++..++++|++...+....+|++++..++.|.....+
T Consensus       217 ~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~  296 (499)
T PRK15049        217 HGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFS  296 (499)
T ss_pred             ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHH
Confidence            35566777888899999999999999999999999999999999999999999999999999999888766666655555


Q ss_pred             Hhccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhcc
Q psy7925         108 RIFGP-IAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQ  157 (472)
Q Consensus       108 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~  157 (472)
                      +...+ .+..+++.++++.+++.|+.++..||++|++||||++|++|+|+|
T Consensus       297 ~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP~~f~kv~  347 (499)
T PRK15049        297 KLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPSFMAKMS  347 (499)
T ss_pred             HcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHhC
Confidence            54443 345666666666666666665555555555555555555554444

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=99.95  E-value=1.8e-26  Score=246.08  Aligned_cols=237  Identities=16%  Similarity=0.163  Sum_probs=174.7

Q ss_pred             ChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhH-HHHHHH
Q psy7925          29 DVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAV-AVTFAN  107 (472)
Q Consensus        29 ~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  107 (472)
                      ++.++..++...+|+|.|||.+++++||+|| +||+|||+..+..+++++|++.+.+....+|.+++.+++.+ .....+
T Consensus       197 ~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r~iPrai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~  275 (473)
T TIGR00905       197 VFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KSDVGKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLE  275 (473)
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHH
Confidence            4678888999999999999999999999999 99999999999999999999999999999999998877766 666667


Q ss_pred             Hhccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHhHhhh
Q psy7925         108 RIFGPIA-WTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQV  186 (472)
Q Consensus       108 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~~~~~  186 (472)
                      +.+++.. ..+.+.++++.+++.|+.++..||.+|+|+|||++|++|+                                
T Consensus       276 ~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amardg~lP~~~~--------------------------------  323 (473)
T TIGR00905       276 MIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAKDGLFPKIFG--------------------------------  323 (473)
T ss_pred             HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHH--------------------------------
Confidence            7777643 5555556666666666666666666665555555555555                                


Q ss_pred             ccCCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHH
Q psy7925         187 TKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYV  266 (472)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~  266 (472)
                                                                                                      
T Consensus       324 --------------------------------------------------------------------------------  323 (473)
T TIGR00905       324 --------------------------------------------------------------------------------  323 (473)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCc
Q psy7925         267 LTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTP  346 (472)
Q Consensus       267 ~~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP  346 (472)
                                                                                             |+|+ +++|
T Consensus       324 -----------------------------------------------------------------------~v~~-~~tP  331 (473)
T TIGR00905       324 -----------------------------------------------------------------------RVNK-NGAP  331 (473)
T ss_pred             -----------------------------------------------------------------------hhCc-cCCC
Confidence                                                                                   4443 3566


Q ss_pred             hhHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccchhHHHHHHHHHHHHHh
Q psy7925         347 TPAVLTIAFLSLLYLM-----SSNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTL  421 (472)
Q Consensus       347 ~~al~~~~~i~~ii~l-----~~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~~~~~il~iv~~l~li~  421 (472)
                      +++++++.+++.+..+     ...++.+.++.++..++.|.+...+.+++|+|++..+++.+.+.++++++.+.++++.+
T Consensus       332 ~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  411 (473)
T TIGR00905       332 SVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVGTYPKIKNRKALIVGVIACVYSIWLLY  411 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccchHHHHHHHHHHHHHHHHH
Confidence            6666665555543333     24678888999999999999999999999877621112223344778888887777754


Q ss_pred             hcccccchhHHHHHHHHHHHHHHHHHHHHHhc
Q psy7925         422 VPMMASPVETGIGCLMIATSVPVYMVFIAWRN  453 (472)
Q Consensus       422 ~~~~~~~~~~~i~~~v~~lgl~iy~~~~~~~~  453 (472)
                      .   ..+......+.+.++|+++|.+++|+|+
T Consensus       412 ~---~~~~~~~~~~~~~~~g~~~y~~~~~~~~  440 (473)
T TIGR00905       412 A---AGLKYLLLGFILYAPGIIFYGRARKERG  440 (473)
T ss_pred             H---hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3   3444566777788999988887665553

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=99.95  E-value=2.6e-26  Score=244.55  Aligned_cols=127  Identities=20%  Similarity=0.288  Sum_probs=86.6

Q ss_pred             hhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhh--hhcc-------hh
Q psy7925          30 VTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAE--VLNS-------EA  100 (472)
Q Consensus        30 ~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~--~~~~-------~~  100 (472)
                      +.++..++..++|+|.|+|.+++++||+|||+||+|||+..+..++.++|++..++.....|+++  +.++       ..
T Consensus       196 ~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~  275 (478)
T TIGR00913       196 FKGVCSVFVTAAFSFGGTELVALTAGEAANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAAS  275 (478)
T ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCC
Confidence            67899999999999999999999999999999999999999999999999999888777777654  3221       12


Q ss_pred             HHHHHHHHhccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhc
Q psy7925         101 VAVTFANRIFGP-IAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMI  156 (472)
Q Consensus       101 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~  156 (472)
                      +.....++...+ ....+.+.++++.+++.|+.++..||.+|++||||.+|++|+|+
T Consensus       276 p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~f~k~  332 (478)
T TIGR00913       276 PFVIAIQNHGIKVLPHIFNAVILISVLSAANSSLYASSRTLYALAHQGLAPKIFAYV  332 (478)
T ss_pred             cHHHHHHHcCCchHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhCCcccHHHHhh
Confidence            332333332222 23455555555555555555555444444444444444444333

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=99.95  E-value=6.1e-26  Score=240.51  Aligned_cols=247  Identities=15%  Similarity=0.147  Sum_probs=171.1

Q ss_pred             CCChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcch-hHHHHH
Q psy7925          27 TTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSE-AVAVTF  105 (472)
Q Consensus        27 ~~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~-~~~~~~  105 (472)
                      ++++.++..++..++|+|.|+|.+++.+||+|||+||+|||+..+...+.++|++..++....+|+++...+. .+....
T Consensus       177 p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~  256 (446)
T PRK10197        177 PNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSV  256 (446)
T ss_pred             cccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHH
Confidence            3567899999999999999999999999999999999999999999999999999999998888887643221 222233


Q ss_pred             HHHhccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHhHh
Q psy7925         106 ANRIFGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMI  184 (472)
Q Consensus       106 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~~~  184 (472)
                      .++..++. ...+++.++++.+++.|+.++..||.+|                                           
T Consensus       257 ~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~-------------------------------------------  293 (446)
T PRK10197        257 LELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLY-------------------------------------------  293 (446)
T ss_pred             HHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------
Confidence            34433333 3555555555555555555555555554                                           


Q ss_pred             hhccCCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHH
Q psy7925         185 QVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVV  264 (472)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vl  264 (472)
                                                                                                      
T Consensus       294 --------------------------------------------------------------------------------  293 (446)
T PRK10197        294 --------------------------------------------------------------------------------  293 (446)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCC
Q psy7925         265 YVLTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKM  344 (472)
Q Consensus       265 Y~~~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~  344 (472)
                                                                                  +++|||.+||+|+|+| |++
T Consensus       294 ------------------------------------------------------------a~ardg~lP~~~~~~~-~~~  312 (446)
T PRK10197        294 ------------------------------------------------------------SLSRRGDAPAVMGKIN-RSK  312 (446)
T ss_pred             ------------------------------------------------------------HHHcCCCcCHHHHhhC-cCC
Confidence                                                                        4555555555555555 566


Q ss_pred             CchhHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhc--CCCCCCCcccch--hHHHHHHH
Q psy7925         345 TPTPAVLTIAFLSLLYLMS------SNIFALINYVGFATWLSIGVGVLCLPVLRYT--QPDLPRPIKVHL--IFPAAYLI  414 (472)
Q Consensus       345 tP~~al~~~~~i~~ii~l~------~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~--~~~~~~~~~~~~--~~~il~iv  414 (472)
                      +|+++++++.+++++..+.      ..++.+.+..++..++.|.+...+.+++||+  +++.++++|.|.  +.+.++++
T Consensus       313 ~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~~~~~~~~~~~~~~~~~p~~~~~~i~  392 (446)
T PRK10197        313 TPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILRAEGSEIRLRMWLYPWLTWLVIG  392 (446)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCCcchHHHHHHH
Confidence            6666666665555444332      2577888999999999999999999999875  333467888875  56666666


Q ss_pred             HHHHHHhhcccc-cchhHHHHHHHHHHHHHHHH-HHHHHhccCcc
Q psy7925         415 ASVFVTLVPMMA-SPVETGIGCLMIATSVPVYM-VFIAWRNKPKV  457 (472)
Q Consensus       415 ~~l~li~~~~~~-~~~~~~i~~~v~~lgl~iy~-~~~~~~~~~~~  457 (472)
                      .+++++....++ .+........+.++++..|+ .-+|++|...+
T Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (446)
T PRK10197        393 FITFVLVVMLFRPAQQLEVISTGLLAIGIICTVPIMARWKKLVLW  437 (446)
T ss_pred             HHHHHHHHHHHCcchHHHHHHHHHHHHHHHhhhHHHhhhcccccC
Confidence            665554443333 34444556777888888888 55555555443

>PRK10836 lysine transporter; Provisional

Probab=99.95  E-value=5.3e-26  Score=243.49  Aligned_cols=129  Identities=16%  Similarity=0.242  Sum_probs=86.9

Q ss_pred             ChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhc--c------hh
Q psy7925          29 DVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLN--S------EA  100 (472)
Q Consensus        29 ~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~--~------~~  100 (472)
                      ++.++..+....+|+|.|||.+++++||+|||+||+|||+..++..+.++|++.+......+|.+|...  +      ..
T Consensus       203 g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~s  282 (489)
T PRK10836        203 GFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVS  282 (489)
T ss_pred             cHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCC
Confidence            455666566667899999999999999999999999999999999999999999999888888765321  1      12


Q ss_pred             HHHHHHHHh-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhcc
Q psy7925         101 VAVTFANRI-FGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQ  157 (472)
Q Consensus       101 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~  157 (472)
                      +.....++. ....+..+++.++++.+++.|+.++..||++|++||||++|++|+|+|
T Consensus       283 p~~~~~~~~g~~~~~~ii~~~il~a~~~~~n~~~~~~sR~l~a~Ardg~lP~~~~kv~  340 (489)
T PRK10836        283 PFTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAPRIFAKLS  340 (489)
T ss_pred             cHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhC
Confidence            333232332 222235555555555555555555555555555555554444444443

>PRK10746 putative transport protein YifK; Provisional

Probab=99.95  E-value=2e-25  Score=237.65  Aligned_cols=139  Identities=19%  Similarity=0.192  Sum_probs=106.7

Q ss_pred             CChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHHH
Q psy7925          28 TDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFAN  107 (472)
Q Consensus        28 ~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (472)
                      +++.++..++..++|+|.|+|.++..+||+|||+||+|||+..+...+.++|++...+....+|++|+..++.+.....+
T Consensus       197 ~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~  276 (461)
T PRK10746        197 GGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFA  276 (461)
T ss_pred             ccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999998889999998766655544444


Q ss_pred             Hhccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHH
Q psy7925         108 RIFGP-IAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAV  167 (472)
Q Consensus       108 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~  167 (472)
                      +...+ .+.++++.++++.+++.|+.++..||.+|++||||++|++|+|+| +++||++++
T Consensus       277 ~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~~~~~~~-~~g~P~~al  336 (461)
T PRK10746        277 KIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVS-RHGVPVAGV  336 (461)
T ss_pred             HhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHhC-CCCCcHHHH
Confidence            44333 346667666677777777766666666666666666666666555 344554443

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=99.94  E-value=1.5e-25  Score=238.96  Aligned_cols=130  Identities=22%  Similarity=0.292  Sum_probs=97.7

Q ss_pred             CChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHHH
Q psy7925          28 TDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFAN  107 (472)
Q Consensus        28 ~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (472)
                      +++.++..++...+|+|.|||.+++++||+|||+||+|||+..+.+.+.+.|++.+.......|++++.+++.+.....+
T Consensus       208 ~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~  287 (469)
T PRK11049        208 KGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFV  287 (469)
T ss_pred             ccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHH
Confidence            45678999999999999999999999999999999999999988889999999999999888899988776666555544


Q ss_pred             Hhccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhcc
Q psy7925         108 RIFGP-IAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQ  157 (472)
Q Consensus       108 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~  157 (472)
                      +..++ ....+.+.++++.+++.|+.++..||.+|+++|||++|++|+|+|
T Consensus       288 ~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~  338 (469)
T PRK11049        288 LVGLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKAFAKLS  338 (469)
T ss_pred             HcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhhC
Confidence            44333 345666556666666666655555555555555555554444444

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=99.94  E-value=4.1e-25  Score=238.08  Aligned_cols=123  Identities=17%  Similarity=0.270  Sum_probs=99.2

Q ss_pred             HHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHhh---------hhHHHHHHH
Q psy7925         302 VFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMS---------SNIFALINY  372 (472)
Q Consensus       302 i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l~---------~~~~~l~~l  372 (472)
                      +.++++.+++.++++++.||.+++++|||.+|++|+|+| |+++|.++++++.+++.++.+.         ..+..+.++
T Consensus       288 ~~~~~~~l~~~~~~i~~~sR~l~~~ardg~lP~~~~k~n-k~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~  366 (507)
T TIGR00910       288 ALIAFGVLAEIASWIVGPSRGMFAAAQKGLLPAAFAKMN-KHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIAL  366 (507)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcCHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            455667788889999999999999999999999999999 8899999999998888765432         123445577


Q ss_pred             HHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccch------hHHHHHHHHHHHHHhhccc
Q psy7925         373 VGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHL------IFPAAYLIASVFVTLVPMM  425 (472)
Q Consensus       373 ~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~~------~~~il~iv~~l~li~~~~~  425 (472)
                      .++..++.|++...+.+++|+|+|+.+||||.|.      ....++++.+++.++..+.
T Consensus       367 ~~~~~~i~Y~l~~~a~i~lr~k~p~~~rpf~~pg~~~~~~i~~~~~~~~~~~~~v~~~~  425 (507)
T TIGR00910       367 TVVIYLCAYFLFFIGYFVLILKHPDLKRTFNIPGGIGGKLIIAGIGFLLSIFAFFISFL  425 (507)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEecCCccchhhHHHHHHHHHHHHHheeee
Confidence            8889999999999999999999999999999863      4566666666666555444

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=99.94  E-value=6.1e-25  Score=234.27  Aligned_cols=118  Identities=16%  Similarity=0.195  Sum_probs=83.9

Q ss_pred             HhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHhh--------hhHHHHHHHHHHHHH
Q psy7925         307 STFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMS--------SNIFALINYVGFATW  378 (472)
Q Consensus       307 s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l~--------~~~~~l~~l~~~~~l  378 (472)
                      +.+++.++++.+.+|.+++++|||.+||+|+|+| |+++|+++++++.+++.++.+.        ..++.+.++.+...+
T Consensus       291 ~~l~~~~~~~~~~sR~~~a~ardg~lP~~~~kv~-k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~  369 (474)
T TIGR03813       291 GVLAGVVTWVAGPSSGMLAVAKAGYLPTFFQKTN-KNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYL  369 (474)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            3344455566666777777777777777777777 6788888888777664433321        235667788888889


Q ss_pred             HHHHHHHhHHHhhhhcCCCCCCCcccch------hHHHHHHHHHHHHHhhccc
Q psy7925         379 LSIGVGVLCLPVLRYTQPDLPRPIKVHL------IFPAAYLIASVFVTLVPMM  425 (472)
Q Consensus       379 ~~yil~~~a~~~l~~~~~~~~~~~~~~~------~~~il~iv~~l~li~~~~~  425 (472)
                      +.|++...+.+++|+|+|+.+||||.|.      ....++++.+++.++....
T Consensus       370 i~y~~~~~a~i~lr~~~~~~~rpf~~p~g~~g~~~~~~~~~~~~~~~~~~~~~  422 (474)
T TIGR03813       370 VMYLLMFASAIYLRYSQPDRPRPYRIPGGLAGMWFIGGLGFVGSALAFVLSFI  422 (474)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCCeEecCCccchhHHHHHHHHHHHHHHheeEe
Confidence            9999999999999988888899999864      4566666666665554433

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>PRK11021 putative transporter; Provisional

Probab=99.94  E-value=5.1e-25  Score=230.48  Aligned_cols=124  Identities=23%  Similarity=0.343  Sum_probs=86.2

Q ss_pred             CCChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHH
Q psy7925          27 TTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFA  106 (472)
Q Consensus        27 ~~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (472)
                      +.++.++..++..++|+|.|||.+++++||+|||+||+|||+..+.++++++|++.+.......+++|...++.+.....
T Consensus       173 ~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~~~~~~~~~~~~~~~~~~~~~~  252 (410)
T PRK11021        173 SIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVVVLHFPAYGDKQAAAASLPGIF  252 (410)
T ss_pred             CccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhccccHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999988766666555544444444445


Q ss_pred             HHhccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy7925         107 NRIFGPIA-WTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMP  150 (472)
Q Consensus       107 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p  150 (472)
                      ++.+|... ..+.+..+++.+++.|+.++..||++|+++|||++|
T Consensus       253 ~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP  297 (410)
T PRK11021        253 VQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPP  297 (410)
T ss_pred             HHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence            56666543 334333344444444443333333333333333333

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=99.94  E-value=6.8e-25  Score=233.68  Aligned_cols=233  Identities=15%  Similarity=0.138  Sum_probs=167.7

Q ss_pred             hhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhH-HHHHHHH
Q psy7925          30 VTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAV-AVTFANR  108 (472)
Q Consensus        30 ~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  108 (472)
                      +.++..++...+|+|.|||.++.++||.|| +||+|||+..+..+++++|++.++.....+|.+++.+.+.+ .....++
T Consensus       194 ~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~-~k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~  272 (468)
T TIGR03810       194 MTQVKNMMLVTVWVFIGIEGASMLSARAEK-RSDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEH  272 (468)
T ss_pred             HHHHHHHHHHHHHHHHhHhHHhhhHhhccC-cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHH
Confidence            567778889999999999999999999999 79999999999999999999999999999999988765444 4555566


Q ss_pred             hccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHhHhhhc
Q psy7925         109 IFGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQVT  187 (472)
Q Consensus       109 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~~~~~~  187 (472)
                      .+++. +..+.+.++++.+++.|+.++.+||.+|++||||                                        
T Consensus       273 ~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg----------------------------------------  312 (468)
T TIGR03810       273 MVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDK----------------------------------------  312 (468)
T ss_pred             HcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------------------------------------
Confidence            66664 3555555555555555555555555555555555                                        


Q ss_pred             cCCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHH
Q psy7925         188 KMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVL  267 (472)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~  267 (472)
                                                                                                      
T Consensus       313 --------------------------------------------------------------------------------  312 (468)
T TIGR03810       313 --------------------------------------------------------------------------------  312 (468)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCch
Q psy7925         268 TNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPT  347 (472)
Q Consensus       268 ~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~  347 (472)
                                                                                     .+||+|+|+| |+++|+
T Consensus       313 ---------------------------------------------------------------~lP~~f~k~~-~~~tP~  328 (468)
T TIGR03810       313 ---------------------------------------------------------------LMPKYFGKEN-ANGAPT  328 (468)
T ss_pred             ---------------------------------------------------------------CccHHHHhhC-CCCCCH
Confidence                                                                           5555555555 556666


Q ss_pred             hHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCC-CCCCCcccchhHHHHHHHHHHHHHh
Q psy7925         348 PAVLTIAFLSLLYLMS-----SNIFALINYVGFATWLSIGVGVLCLPVLRYTQP-DLPRPIKVHLIFPAAYLIASVFVTL  421 (472)
Q Consensus       348 ~al~~~~~i~~ii~l~-----~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~-~~~~~~~~~~~~~il~iv~~l~li~  421 (472)
                      ++++++.+++.+..+.     ..++.+.++.+...++.|.+...+.+++|+|++ +.+|+++  .+++.++.+.++++++
T Consensus       329 ~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~  406 (468)
T TIGR03810       329 NALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVKLSWRGGQERGRRKQ--LLIGLVALLYAVWLIY  406 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh--HHHHHHHHHHHHHHHH
Confidence            6666665555443321     457788899999999999999999999987753 2223332  4667777777777755


Q ss_pred             hcccccchhHHHHHHHHHHHHHHHHHHHHHh
Q psy7925         422 VPMMASPVETGIGCLMIATSVPVYMVFIAWR  452 (472)
Q Consensus       422 ~~~~~~~~~~~i~~~v~~lgl~iy~~~~~~~  452 (472)
                      .   .............+.|+++|++.+|++
T Consensus       407 ~---~~~~~~~~~~~~~~~g~~~y~~~~~~~  434 (468)
T TIGR03810       407 A---AGLKYLLLSAILYAPGIYFYARARKEK  434 (468)
T ss_pred             H---hhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3   344556677778889998887644433

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PRK10249 phenylalanine transporter; Provisional

Probab=99.94  E-value=6.4e-25  Score=233.46  Aligned_cols=211  Identities=16%  Similarity=0.209  Sum_probs=154.6

Q ss_pred             CChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHHH
Q psy7925          28 TDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFAN  107 (472)
Q Consensus        28 ~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (472)
                      +++.++..++...+|+|.|+|.+++++||+|||+||+|||+..+...++++|++.........|++|+..++.+.....+
T Consensus       206 ~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~  285 (458)
T PRK10249        206 TGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFH  285 (458)
T ss_pred             CcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999988888888887655445544444


Q ss_pred             Hhccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHhHhhh
Q psy7925         108 RIFGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQV  186 (472)
Q Consensus       108 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~~~~~  186 (472)
                      +..++. +..+++.++++.++                                                           
T Consensus       286 ~~~~~~~~~~~~~~~~~a~~~-----------------------------------------------------------  306 (458)
T PRK10249        286 NLDSNVVASALNFVILVASLS-----------------------------------------------------------  306 (458)
T ss_pred             HcCchhHHHHHHHHHHHHHHH-----------------------------------------------------------
Confidence            444433 34444444444444                                                           


Q ss_pred             ccCCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHH
Q psy7925         187 TKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYV  266 (472)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~  266 (472)
                                                                                                      
T Consensus       307 --------------------------------------------------------------------------------  306 (458)
T PRK10249        307 --------------------------------------------------------------------------------  306 (458)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCc
Q psy7925         267 LTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTP  346 (472)
Q Consensus       267 ~~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP  346 (472)
                                                                  +.++.+++.||++|+++|||.+|++|+|+| |+++|
T Consensus       307 --------------------------------------------~~~~~~~~~sR~l~a~ardg~lP~~~~kv~-~~~~P  341 (458)
T PRK10249        307 --------------------------------------------VYNSGVYSNSRMLFGLSVQGNAPKFLTRVS-RRGVP  341 (458)
T ss_pred             --------------------------------------------HHHHHHHHHHHHHHHHhcCCCcCHHHHHhC-CCCCC
Confidence                                                        444555556666666666666666666666 56777


Q ss_pred             hhHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHHHHHHhHHHhhhh--cCCCCCCCcccch--hHHHHHHHHH
Q psy7925         347 TPAVLTIAFLSLLYLMS------SNIFALINYVGFATWLSIGVGVLCLPVLRY--TQPDLPRPIKVHL--IFPAAYLIAS  416 (472)
Q Consensus       347 ~~al~~~~~i~~ii~l~------~~~~~l~~l~~~~~l~~yil~~~a~~~l~~--~~~~~~~~~~~~~--~~~il~iv~~  416 (472)
                      +++++++.+++.+..+.      ..++.+.+..+...++.|.+...+.+++|+  ++++.++|||.|+  +.++++++.+
T Consensus       342 ~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~p~~~~~~p~~~~~~l~~~  421 (458)
T PRK10249        342 INSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRFRAAMRRQGRETQFKALLYPFGNYLCIAFL  421 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCCccHHHHHHHHHH
Confidence            77777776666655432      246778899999999999999999999886  3444567898876  5555555555


Q ss_pred             HHHHhh
Q psy7925         417 VFVTLV  422 (472)
Q Consensus       417 l~li~~  422 (472)
                      .+.+..
T Consensus       422 ~~~~v~  427 (458)
T PRK10249        422 GMILLL  427 (458)
T ss_pred             HHHHHH
Confidence            544333

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=99.94  E-value=1.1e-24  Score=229.93  Aligned_cols=130  Identities=18%  Similarity=0.256  Sum_probs=101.3

Q ss_pred             CChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHHH
Q psy7925          28 TDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFAN  107 (472)
Q Consensus        28 ~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (472)
                      +++.++..++..++|+|.|+|.+++.+||+|||+||+|||+..+..+++++|++.++.....+|++|+.+++.|.....+
T Consensus       184 ~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~~~~  263 (435)
T PRK10435        184 TDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGIIYIAATQVISGMFPASVMAASGAPFAISAS  263 (435)
T ss_pred             chHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999777777666667


Q ss_pred             Hhccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhcc
Q psy7925         108 RIFGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQ  157 (472)
Q Consensus       108 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~  157 (472)
                      +.+++. ...+++.++++.+++.|+.++..+|..++++|||++|++|+|+|
T Consensus       264 ~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG~lP~~f~k~n  314 (435)
T PRK10435        264 TILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGNFPKVYGEVD  314 (435)
T ss_pred             HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC
Confidence            766664 35555555556666655555555555555555555444444444

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=99.94  E-value=8e-25  Score=231.76  Aligned_cols=130  Identities=18%  Similarity=0.239  Sum_probs=90.2

Q ss_pred             CChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcch-hHHHHHH
Q psy7925          28 TDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSE-AVAVTFA  106 (472)
Q Consensus        28 ~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~-~~~~~~~  106 (472)
                      +++.++..++..++|+|.|+|.+++++||+|||+||+|||+..+...++++|++........+|+++....+ .+.....
T Consensus       198 ~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~  277 (452)
T TIGR01773       198 NGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVL  277 (452)
T ss_pred             ccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHH
Confidence            456789999999999999999999999999999999999999999999999999888777777766544322 2444444


Q ss_pred             HHhccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhcc
Q psy7925         107 NRIFGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQ  157 (472)
Q Consensus       107 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~  157 (472)
                      ++..++. ...+++.++++.+++.|+.++..||.+|++||||++|++|+|+|
T Consensus       278 ~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~v~  329 (452)
T TIGR01773       278 ELLGIPHAKLIMDFVVLTAVLSCLNSALYTTSRMLYSLAERGDAPRVFMKLN  329 (452)
T ss_pred             HHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHhhC
Confidence            4443333 34555555555555555555544444444444444444444333

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK10238 aromatic amino acid transporter; Provisional

Probab=99.94  E-value=1.9e-24  Score=229.66  Aligned_cols=131  Identities=15%  Similarity=0.259  Sum_probs=92.7

Q ss_pred             CCChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHH
Q psy7925          27 TTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFA  106 (472)
Q Consensus        27 ~~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (472)
                      ++++.++..++..++|+|.|+|.+++++||+|||+||+|||+..++..+.+.|++.........|++++.+++.|.....
T Consensus       196 ~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~  275 (456)
T PRK10238        196 PHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIF  275 (456)
T ss_pred             cccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHH
Confidence            34567888888899999999999999999999999999999999999999999998888777889888876655555444


Q ss_pred             HHhccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhcc
Q psy7925         107 NRIFGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQ  157 (472)
Q Consensus       107 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~  157 (472)
                      ++..++. ...+++.++++.+++.|+.++..||.+|++||||++|++|+|+|
T Consensus       276 ~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP~~f~kv~  327 (456)
T PRK10238        276 HELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVD  327 (456)
T ss_pred             HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC
Confidence            4433332 34455555555555555554444444444444444444444333

>PRK10580 proY putative proline-specific permease; Provisional

Probab=99.94  E-value=1e-24  Score=231.47  Aligned_cols=140  Identities=21%  Similarity=0.239  Sum_probs=100.6

Q ss_pred             CCChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHH
Q psy7925          27 TTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFA  106 (472)
Q Consensus        27 ~~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (472)
                      ++++.++..++..++|+|.|+|.+++++||+|||+||+|||+..+.+.+.++|++.........|++++..++.+.....
T Consensus       195 ~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~  274 (457)
T PRK10580        195 SNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTF  274 (457)
T ss_pred             CcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999988888888888765544444443


Q ss_pred             HHhccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHH
Q psy7925         107 NRIFGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAV  167 (472)
Q Consensus       107 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~  167 (472)
                      ++...+. ...+++.++++.+++.|+.++..||.++++||||.+|++|+|+|+ ++||++|+
T Consensus       275 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~~~~kv~~-~~~P~~Ai  335 (457)
T PRK10580        275 QHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFSKTSR-RGIPWVTV  335 (457)
T ss_pred             HHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHhhCC-CCCcHHHH
Confidence            4332222 345555555666666666666666666666666655555555553 34444443

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=99.92  E-value=1.5e-23  Score=223.83  Aligned_cols=117  Identities=18%  Similarity=0.218  Sum_probs=90.3

Q ss_pred             HHHHHHhhhchhhhhhhhhHHHHHhhhcCCCC--hhhhcccCCCCCchhHHHHHHHHHHHHHhh-----hhHHHHHHHHH
Q psy7925         302 VFVALSTFGGVNGIILTTSRLFYAGACEGQMP--EILTMIQVTKMTPTPAVLTIAFLSLLYLMS-----SNIFALINYVG  374 (472)
Q Consensus       302 i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP--~~f~kv~~k~~tP~~al~~~~~i~~ii~l~-----~~~~~l~~l~~  374 (472)
                      +.++++.+++.++++++.||++++++|||.+|  ++|+|+|||+++|+++++++.+++.++.+.     ..++.+.+..+
T Consensus       310 ~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~  389 (482)
T TIGR00907       310 CLILVTSFFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCT  389 (482)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            34556667788889999999999999999999  999999999999999999998888776653     36788889999


Q ss_pred             HHHHHHHHHHHhHHHhhhhcCCCCCCCcccch---hHHHHHHHHHHHH
Q psy7925         375 FATWLSIGVGVLCLPVLRYTQPDLPRPIKVHL---IFPAAYLIASVFV  419 (472)
Q Consensus       375 ~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~~---~~~il~iv~~l~l  419 (472)
                      +..++.|.+...+.+++|++ ++.+||||.+.   .+..++++.+.+.
T Consensus       390 ~~~~i~y~~~~~~~l~~~~~-~~~~~~f~lg~~~~~~~~~~~~~~~~~  436 (482)
T TIGR00907       390 VALDVSYVIPIICKLAKGRN-TIAPGPFWLGKYGFFVNAVAVAWTVFS  436 (482)
T ss_pred             HHHHHHHHHHHHHHHHhcCC-CCCCCCCcCCcchHHHHHHHHHHHHHH
Confidence            99999999988776654433 45577888743   3444444444333

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=99.91  E-value=2.8e-23  Score=219.85  Aligned_cols=236  Identities=19%  Similarity=0.281  Sum_probs=179.7

Q ss_pred             hhhhhHHHHHhhcCCCc--------cccccC-CCCChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHH
Q psy7925           3 YVVQIMIGVANIFGETK--------YFTFEN-STTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCT   73 (472)
Q Consensus         3 ~~~~i~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~   73 (472)
                      ++.+++.|+..++|...        +++-++ -.+++.+++..+..+-|+|.|.|.+...++|.|||+|++|||+.-...
T Consensus       197 ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAik~vfw  276 (541)
T COG0833         197 IIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAIKQVFW  276 (541)
T ss_pred             HHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHHHHHHH
Confidence            56778888888884322        222111 236789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccChhhh--h-------cchhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7925          74 LVTVVYVLTNVAFYTTLSPAEV--L-------NSEAVAVTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGA  144 (472)
Q Consensus        74 ~~~~~y~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~  144 (472)
                      .+.++|++..+.....+|++|-  .       .+++....+-+.+....+.+++++++++.+++.|+.+|..||.+|+||
T Consensus       277 RIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA  356 (541)
T COG0833         277 RILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRMLYSLA  356 (541)
T ss_pred             HHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence            9999999999999999998772  1       222444445455544456888877777777777776666666666666


Q ss_pred             hcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHhHhhhccCCCchhHHHHHHHHhhhheecchhhhhccccccccc
Q psy7925         145 CEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWT  224 (472)
Q Consensus       145 ~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~  224 (472)
                      +||+.|++|+                                                                      
T Consensus       357 ~~g~APk~f~----------------------------------------------------------------------  366 (541)
T COG0833         357 KQGKAPKIFA----------------------------------------------------------------------  366 (541)
T ss_pred             hcCCCchHHH----------------------------------------------------------------------
Confidence            6665555555                                                                      


Q ss_pred             ccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHH
Q psy7925         225 FANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFV  304 (472)
Q Consensus       225 ~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~  304 (472)
                                                                                                      
T Consensus       367 --------------------------------------------------------------------------------  366 (541)
T COG0833         367 --------------------------------------------------------------------------------  366 (541)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHH
Q psy7925         305 ALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMS------SNIFALINYVGFATW  378 (472)
Q Consensus       305 l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l~------~~~~~l~~l~~~~~l  378 (472)
                                                       |+| |+|.|..++..+.+.+++..+.      ..++++.+++++...
T Consensus       367 ---------------------------------~~~-r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~  412 (541)
T COG0833         367 ---------------------------------KVD-RRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGF  412 (541)
T ss_pred             ---------------------------------hhC-CCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHH
Confidence                                             444 7788888888888877777763      257889999999999


Q ss_pred             HHHHHHHhHHHhhhhcC----CCC-CCCcccch--hHHHHHHHHHHHHHhh
Q psy7925         379 LSIGVGVLCLPVLRYTQ----PDL-PRPIKVHL--IFPAAYLIASVFVTLV  422 (472)
Q Consensus       379 ~~yil~~~a~~~l~~~~----~~~-~~~~~~~~--~~~il~iv~~l~li~~  422 (472)
                      +.|+..+++.+++|+..    ++. +-|||.|.  +.++.+++.|..+++.
T Consensus       413 i~W~~I~~shirFR~A~~~QG~s~~~L~yks~~~p~g~~~~~~~~~li~i~  463 (541)
T COG0833         413 IAWGSICLSHIRFRRAMKAQGRSLDELPYKSPFGPYGPIYGLILCILILIG  463 (541)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCChhhcCccCCCccHHHHHHHHHHHHHHHH
Confidence            99999999999998732    222 35899987  8888888888777655

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=99.91  E-value=1.5e-22  Score=212.76  Aligned_cols=197  Identities=28%  Similarity=0.416  Sum_probs=158.6

Q ss_pred             CChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcc-h-hHHHHH
Q psy7925          28 TDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNS-E-AVAVTF  105 (472)
Q Consensus        28 ~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-~-~~~~~~  105 (472)
                      ....++..++...+|+|.|+|.+++++||+|||+|++|||+..+.+.++++|++.++......+.+++..+ . .+....
T Consensus       198 ~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~  277 (466)
T COG0531         198 GSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALA  277 (466)
T ss_pred             chHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHH
Confidence            44568999999999999999999999999999999999999999999999999999999999997655543 0 111111


Q ss_pred             HHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHhHhh
Q psy7925         106 ANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQ  185 (472)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~~~~  185 (472)
                      .....+.                                                                         
T Consensus       278 ~~~~~g~-------------------------------------------------------------------------  284 (466)
T COG0531         278 ALFGGGN-------------------------------------------------------------------------  284 (466)
T ss_pred             HHHcCcc-------------------------------------------------------------------------
Confidence            1111110                                                                         


Q ss_pred             hccCCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHH
Q psy7925         186 VTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVY  265 (472)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY  265 (472)
                                                                                                      
T Consensus       285 --------------------------------------------------------------------------------  284 (466)
T COG0531         285 --------------------------------------------------------------------------------  284 (466)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCC
Q psy7925         266 VLTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMT  345 (472)
Q Consensus       266 ~~~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~t  345 (472)
                                                   ....++.+.++.+.+++.+++..+.+|..++|+|||.+|++|+|+|+|+++
T Consensus       285 -----------------------------~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~~~~~~~~~~~~  335 (466)
T COG0531         285 -----------------------------WGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPKGRT  335 (466)
T ss_pred             -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHhCCCCCC
Confidence                                         001223456677888888999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHH-HHHhhh----hHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccch
Q psy7925         346 PTPAVLTIAFLSL-LYLMSS----NIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHL  406 (472)
Q Consensus       346 P~~al~~~~~i~~-ii~l~~----~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~~  406 (472)
                      |+++++++.+++. +.....    .++.+.++.+...++.|.+...+..++|+|+++.+|+++.+.
T Consensus       336 P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~  401 (466)
T COG0531         336 PVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPDLKRPFRLPL  401 (466)
T ss_pred             CHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccc
Confidence            9999999999999 333322    367888999999999999999999999998777777777665

>KOG1286|consensus

Probab=99.90  E-value=6e-23  Score=222.18  Aligned_cols=136  Identities=18%  Similarity=0.282  Sum_probs=110.4

Q ss_pred             CChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhh--hhcchhHHHHH
Q psy7925          28 TDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAE--VLNSEAVAVTF  105 (472)
Q Consensus        28 ~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~--~~~~~~~~~~~  105 (472)
                      .++.|++.++.++.|+|.|+|.++..+||+|||+|++|+|+..++.+++++|++..+.+...+|++|  +.++.+....|
T Consensus       229 ~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF  308 (554)
T KOG1286|consen  229 FGFKGVLSGAATAFFSFIGFELVATTAEEAKNPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPF  308 (554)
T ss_pred             CCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHH
Confidence            3489999999999999999999999999999999999999999999999999999999999999988  77665444444


Q ss_pred             H-HHhccchhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCch
Q psy7925         106 A-NRIFGPIAW---TLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPT  164 (472)
Q Consensus       106 ~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~  164 (472)
                      . .....+...   ++++.+++++.++.|+.++.+||.+|+||+||++|++|+++|++ ++|.
T Consensus       309 ~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~-g~P~  370 (554)
T KOG1286|consen  309 VIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRR-GVPL  370 (554)
T ss_pred             HHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCC-CCch
Confidence            3 333344444   88888888888888888888777777777777777666666644 4443

>TIGR00930 2a30 K-Cl cotransporter

Probab=99.90  E-value=2.6e-22  Score=229.43  Aligned_cols=155  Identities=10%  Similarity=0.008  Sum_probs=126.8

Q ss_pred             hHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCC--hhhhcccCCCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy7925         298 WTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMP--EILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGF  375 (472)
Q Consensus       298 ~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP--~~f~kv~~k~~tP~~al~~~~~i~~ii~l~~~~~~l~~l~~~  375 (472)
                      +++.++++++++++.++.+.+++|+++++||||++|  ++|+|+|+|+++|++++++++++++++++..+++.+..+.+.
T Consensus       388 ~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~~l~~ia~lis~  467 (953)
T TIGR00930       388 PLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIAELNTIAPIISN  467 (953)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            456678889999999999999999999999999999  899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhHHHhhhhcC-CCCCCCcccc-hhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHhc
Q psy7925         376 ATWLSIGVGVLCLPVLRYTQ-PDLPRPIKVH-LIFPAAYLIASVFVTLVPMMASPVETGIGCLMIATSVPVYMVFIAWRN  453 (472)
Q Consensus       376 ~~l~~yil~~~a~~~l~~~~-~~~~~~~~~~-~~~~il~iv~~l~li~~~~~~~~~~~~i~~~v~~lgl~iy~~~~~~~~  453 (472)
                      .++++|.+.+++.+++++++ |+++..||.. .++++++++.|+++.+..      ..+..++.+++++.+|.++.+++.
T Consensus       468 ~fLl~Y~lvnla~~~l~~~~~p~~RP~fk~~~~~~sllG~l~c~~lmf~i------~w~~ali~~~i~~~ly~~~~~~~~  541 (953)
T TIGR00930       468 FFLASYALINFSCFHASLLRSPGWRPRFKYYHWWLSLLGASLCCAIMFLI------SWWAALVAMVIALFLYKYVTYKKP  541 (953)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCCCCccccchHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhccCC
Confidence            99999999999999887654 4443344543 388999999998885542      234555566667777776666655


Q ss_pred             cCccc
Q psy7925         454 KPKVF  458 (472)
Q Consensus       454 ~~~~~  458 (472)
                      +.++.
T Consensus       542 ~~~wg  546 (953)
T TIGR00930       542 DVNWG  546 (953)
T ss_pred             CCCcc
Confidence            55443

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=99.90  E-value=2.4e-21  Score=207.95  Aligned_cols=103  Identities=14%  Similarity=0.176  Sum_probs=87.4

Q ss_pred             HHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHhh---h------hHHHHH
Q psy7925         300 LPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMS---S------NIFALI  370 (472)
Q Consensus       300 i~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l~---~------~~~~l~  370 (472)
                      +.+..+.+.+++.++++++.+|.+++++|||++||+|+|+| |+++|+++++++.++..+..+.   .      .++.+.
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~n-k~g~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~  398 (496)
T PRK15238        320 TGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLN-KNGMPANAMWLQCIIVSVFILLVSFGGDAASAFFNILT  398 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            34667788999999999999999999999999999999999 8999999999998777766432   1      156788


Q ss_pred             HHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCccc
Q psy7925         371 NYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKV  404 (472)
Q Consensus       371 ~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~  404 (472)
                      ++.++..++.|++...+.+++|| +|+.+||++.
T Consensus       399 ~l~~~~~li~y~~~~~a~i~~r~-~~~~~r~~~~  431 (496)
T PRK15238        399 LMANVSMTLPYLFLAGAFPFFKK-KKDIDRPFVV  431 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCcee
Confidence            99999999999999999999876 4666777665

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=99.89  E-value=2.1e-22  Score=209.58  Aligned_cols=148  Identities=20%  Similarity=0.256  Sum_probs=108.2

Q ss_pred             hhhhhHHHHHhhcCC---C------ccccccC--CCCChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHH
Q psy7925           3 YVVQIMIGVANIFGE---T------KYFTFEN--STTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYIS   71 (472)
Q Consensus         3 ~~~~i~~~~~~~~~~---~------~~~~~~~--~~~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~   71 (472)
                      ++.+|+.|++.+++.   +      +|..-+|  -++++.|++.++..++|+|.|.|.++..+.|+|||+|++|||+-..
T Consensus       164 Ii~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkAin~V  243 (462)
T COG1113         164 IIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKAINSV  243 (462)
T ss_pred             HHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHHHhhh
Confidence            567788888888731   1      1221111  3678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHHHHh-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy7925          72 CTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFANRI-FGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMP  150 (472)
Q Consensus        72 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p  150 (472)
                      ...+.++|+...+......|++++..++.|.....++. ....+.++++.++++..++.|+.++.+||.+|++|+||..|
T Consensus       244 ~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~AP  323 (462)
T COG1113         244 IWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAP  323 (462)
T ss_pred             hHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcccccccccchHHHHHhhcCccc
Confidence            99999999999999999999999888877766665554 33345777755555444444444444444443333333333

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=99.88  E-value=3.5e-21  Score=201.34  Aligned_cols=210  Identities=28%  Similarity=0.437  Sum_probs=156.8

Q ss_pred             CChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchh---HHHH
Q psy7925          28 TDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEA---VAVT  104 (472)
Q Consensus        28 ~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~---~~~~  104 (472)
                      +++.++..++...+|+|.|||.+++++||.||  ||+|||+..+.+++.+.|.+.+.+.....|+++...+++   +...
T Consensus       185 ~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~--k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (426)
T PF13520_consen  185 SGWPGFLAGFSVAFFAFSGFEAIASLAEENKN--KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAV  262 (426)
T ss_dssp             SSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHH
T ss_pred             ccccchhhHHHHHHhhcccccccccccccccc--hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccch
Confidence            35556889999999999999999999999777  899999999999999999999999999999988876543   4555


Q ss_pred             HHHHhccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHhH
Q psy7925         105 FANRIFGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTM  183 (472)
Q Consensus       105 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~~  183 (472)
                      +.++..+.. ...+.+.++++.+++.|+                                                    
T Consensus       263 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~----------------------------------------------------  290 (426)
T PF13520_consen  263 LASAVGGSWLAIIVSIAAILSLFGSINA----------------------------------------------------  290 (426)
T ss_dssp             HHHHHHCCTHHHHHHHHHHHHHHHHHHH----------------------------------------------------
T ss_pred             hhccccccccccccccccccccccccch----------------------------------------------------
Confidence            666665443 466655555555555555                                                    


Q ss_pred             hhhccCCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHH
Q psy7925         184 IQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTV  263 (472)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~v  263 (472)
                                                                                                      
T Consensus       291 --------------------------------------------------------------------------------  290 (426)
T PF13520_consen  291 --------------------------------------------------------------------------------  290 (426)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCC
Q psy7925         264 VYVLTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTK  343 (472)
Q Consensus       264 lY~~~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~  343 (472)
                                                                         .+.+.+|.+++++|||++|++|+|+| |+
T Consensus       291 ---------------------------------------------------~~~~~sR~l~~~a~d~~lP~~~~~~~-k~  318 (426)
T PF13520_consen  291 ---------------------------------------------------FIFGASRLLYAMARDGVLPKWFAKVN-KF  318 (426)
T ss_dssp             ---------------------------------------------------HHHHHHHHHHHHHHTTSSSGGGGTTS-SS
T ss_pred             ---------------------------------------------------hhcchhhcccccccccchhhhhhhcc-cc
Confidence                                                               44555555555666666666677777 78


Q ss_pred             CCchhHHHHHHHHHHHHHh-h-----hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCC-CcccchhHHHHHHHHH
Q psy7925         344 MTPTPAVLTIAFLSLLYLM-S-----SNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPR-PIKVHLIFPAAYLIAS  416 (472)
Q Consensus       344 ~tP~~al~~~~~i~~ii~l-~-----~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~-~~~~~~~~~il~iv~~  416 (472)
                      ++|++++++..+++.+..+ .     .+++.+.+..++.....|.+...+.+++|+|+|+.+| +++  ...++++.+.+
T Consensus       319 ~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~i~~~~~~  396 (426)
T PF13520_consen  319 GTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVILAVLFLRRKRPDLKRIPYR--PPVGIIGIIII  396 (426)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHSCSSGH-HHH--HHHHHHHHHHH
T ss_pred             CCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCCCCcc--hHHHHHHHHHH
Confidence            8888888888877755543 2     2578889999999999999999999999999887655 333  24555556666


Q ss_pred             HHHHhhccc
Q psy7925         417 VFVTLVPMM  425 (472)
Q Consensus       417 l~li~~~~~  425 (472)
                      ++.+....+
T Consensus       397 ~~~~~~~~~  405 (426)
T PF13520_consen  397 LFVIIASFF  405 (426)
T ss_dssp             HHHHHHCCC
T ss_pred             HHHHHHHHH
Confidence            555555444

...

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=99.88  E-value=1.9e-20  Score=199.99  Aligned_cols=102  Identities=20%  Similarity=0.214  Sum_probs=76.4

Q ss_pred             HHHhhhchhhhhhhhhHHHHHhhhcCCCCh--hhhcccCCCCCchhHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHH
Q psy7925         305 ALSTFGGVNGIILTTSRLFYAGACEGQMPE--ILTMIQVTKMTPTPAVLTIAFLSLLYLMS-----SNIFALINYVGFAT  377 (472)
Q Consensus       305 l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~--~f~kv~~k~~tP~~al~~~~~i~~ii~l~-----~~~~~l~~l~~~~~  377 (472)
                      +++.+++.++.+.+.||++|+++|||.+|+  +|+|+|||+++|++++++..+++.++.+.     ..++.+.++.++..
T Consensus       306 ~i~~~~~~~~~~~~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~~~~  385 (475)
T TIGR03428       306 AIAILVCTLAIQTAGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVLI  385 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            345556667777778888888888888884  78888888999999988888887766653     35678889999999


Q ss_pred             HHHHHHHHhHHHhhhhcC-C-----CCCCCcccch
Q psy7925         378 WLSIGVGVLCLPVLRYTQ-P-----DLPRPIKVHL  406 (472)
Q Consensus       378 l~~yil~~~a~~~l~~~~-~-----~~~~~~~~~~  406 (472)
                      +..|.+.....+..|+|+ |     ..++||+.+.
T Consensus       386 ~~~Y~~~~~~~l~~~~~~~~~~~~~~~~g~f~lg~  420 (475)
T TIGR03428       386 YLAYLLVTVPLLLRRLRGWPRGDQTDPAGLFSLGR  420 (475)
T ss_pred             HHHHHHHHHHHHHHHHhccCCccCCCCCCCCCCch
Confidence            999999888877665442 1     2356677664

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=99.87  E-value=3.1e-23  Score=221.11  Aligned_cols=186  Identities=24%  Similarity=0.313  Sum_probs=149.3

Q ss_pred             ChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcch-----hHHH
Q psy7925          29 DVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSE-----AVAV  103 (472)
Q Consensus        29 ~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~-----~~~~  103 (472)
                      ++.+++.++..++|+|.|+|.++..+||+|||+||+|||+..++++++++|++...+.....|+++....+     .+..
T Consensus       198 ~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~  277 (478)
T PF00324_consen  198 GFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFV  277 (478)
T ss_pred             chhHHHHhhhhhhcccccccccccccccCCCchhhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchh
Confidence            48899999999999999999999999999999999999999999999999999999999999887754332     1222


Q ss_pred             HHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHhH
Q psy7925         104 TFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTM  183 (472)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~~  183 (472)
                      ...++..++..                                                                     
T Consensus       278 ~~~~~~~~~~~---------------------------------------------------------------------  288 (478)
T PF00324_consen  278 IAAQYSGGPWL---------------------------------------------------------------------  288 (478)
T ss_pred             hhhhhcccccc---------------------------------------------------------------------
Confidence            22221111100                                                                     


Q ss_pred             hhhccCCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHH
Q psy7925         184 IQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTV  263 (472)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~v  263 (472)
                                                                                                      
T Consensus       289 --------------------------------------------------------------------------------  288 (478)
T PF00324_consen  289 --------------------------------------------------------------------------------  288 (478)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCC
Q psy7925         264 VYVLTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTK  343 (472)
Q Consensus       264 lY~~~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~  343 (472)
                                                       ..++.++.+.+.+++.++.++++||++++|+|||.+|+++.+.|+|+
T Consensus       289 ---------------------------------~~i~~~~~l~s~~s~~~~~~~~~sR~l~ama~dg~lP~~~~~~~~k~  335 (478)
T PF00324_consen  289 ---------------------------------AWIVNAGILISAFSSANASLYAASRLLYAMARDGLLPKKFFARHPKN  335 (478)
T ss_pred             ---------------------------------cceecccchhhhhhhhhhhhcccceeehhhhhhhhhhhhhhhhhhcC
Confidence                                             01123566778888999999999999999999999998888888899


Q ss_pred             CCchhHHHHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCC
Q psy7925         344 MTPTPAVLTIAFLSLLYLMSS------NIFALINYVGFATWLSIGVGVLCLPVLRYTQP  396 (472)
Q Consensus       344 ~tP~~al~~~~~i~~ii~l~~------~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~  396 (472)
                      |+|+++++++.+++.+..+..      .++.+.+..++..+..|.+...+.+++|++.+
T Consensus       336 ~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~r~~~~  394 (478)
T PF00324_consen  336 GVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNISTISNLIVYILINISYIRFRKKFK  394 (478)
T ss_pred             CceEEEEeeehhchheeeeeccchhhHHHHHHhhhhhhhhhhHHHhhhhhhhhhhhhhc
Confidence            999999999988888887632      24556788888999999999999998887643

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>KOG1289|consensus

Probab=99.79  E-value=2.3e-18  Score=182.49  Aligned_cols=237  Identities=19%  Similarity=0.247  Sum_probs=164.5

Q ss_pred             CChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccC--hhhhhcch--hHHH
Q psy7925          28 TDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLS--PAEVLNSE--AVAV  103 (472)
Q Consensus        28 ~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~--~~~~~~~~--~~~~  103 (472)
                      +...+|++++....|.+.|+|.++|++||+|||+|+.||||+.+..+..++-....+.+...++  .+.+.+++  .|..
T Consensus       249 ~~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~  328 (550)
T KOG1289|consen  249 NNGWAFILGFFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIV  328 (550)
T ss_pred             cchHHHHHhhccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHH
Confidence            3567999999999999999999999999999999999999999999999887666666666665  34444544  5677


Q ss_pred             HHHHHhccchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHh
Q psy7925         104 TFANRIFGPIAW-TLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILT  182 (472)
Q Consensus       104 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~  182 (472)
                      .+..+..|..+. .+..                                                               
T Consensus       329 ~i~~~~lg~k~~v~~~~---------------------------------------------------------------  345 (550)
T KOG1289|consen  329 QIYYQALGKKGAVFLLS---------------------------------------------------------------  345 (550)
T ss_pred             HHHHHhcCCCceEehhH---------------------------------------------------------------
Confidence            776666666432 1222                                                               


Q ss_pred             HhhhccCCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHH
Q psy7925         183 MIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVT  262 (472)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~  262 (472)
                                                                                                      
T Consensus       346 --------------------------------------------------------------------------------  345 (550)
T KOG1289|consen  346 --------------------------------------------------------------------------------  345 (550)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCC--hhhhccc
Q psy7925         263 VVYVLTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMP--EILTMIQ  340 (472)
Q Consensus       263 vlY~~~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP--~~f~kv~  340 (472)
                                                              ..+++.+-+..+.+...||..|+.+|||.||  +++.|+|
T Consensus       346 ----------------------------------------l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~  385 (550)
T KOG1289|consen  346 ----------------------------------------LIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVN  385 (550)
T ss_pred             ----------------------------------------HHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecC
Confidence                                                    2233333444455556677777777777777  7889999


Q ss_pred             CCCCCchhHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccch------hHH
Q psy7925         341 VTKMTPTPAVLTIAFLSLLYLMS-----SNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHL------IFP  409 (472)
Q Consensus       341 ~k~~tP~~al~~~~~i~~ii~l~-----~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~~------~~~  409 (472)
                      |++++|.+|+++..+++.++.+.     ..++++.+.......++|....++.+.++|+ +-.+.||....      ...
T Consensus       386 ~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~Alfs~a~i~l~~Ay~iP~~~rlf~~r~-~f~~gp~~lGk~s~p~~~i~  464 (550)
T KOG1289|consen  386 PQTKVPLNAVLLSCIISILLGLLILASATAFNALFSAAAIALFIAYAIPIFCRLFFGRD-DFRPGPFNLGKFSKPIGIIA  464 (550)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHhheeeccc-ccCCCCccccccccchHHHH
Confidence            99999999999999998888773     4788999999999999999888887766654 22234443332      344


Q ss_pred             HHHHHHHHHHHhhcccccchh------HHHHHHHHHHHHHHHHHH
Q psy7925         410 AAYLIASVFVTLVPMMASPVE------TGIGCLMIATSVPVYMVF  448 (472)
Q Consensus       410 il~iv~~l~li~~~~~~~~~~------~~i~~~v~~lgl~iy~~~  448 (472)
                      +...+.++.++..|....++.      ..+.....+++++.|+..
T Consensus       465 v~w~lf~~vil~fP~~~pvT~~~MNya~VV~gg~~lf~li~~~~~  509 (550)
T KOG1289|consen  465 VLWVLFMIVILCFPSVYPVTADNMNYACVVYGGVMLFCLIYYFVS  509 (550)
T ss_pred             HHHHHHHHHHHhCCcccCCCcccCceEEEeehhhhhhhhheeeee
Confidence            444445555555555544333      123333455555455444

>KOG1287|consensus

Probab=99.62  E-value=4.4e-15  Score=157.01  Aligned_cols=206  Identities=31%  Similarity=0.473  Sum_probs=163.9

Q ss_pred             hccCCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHH
Q psy7925         186 VTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVY  265 (472)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY  265 (472)
                      +++..+++..+..|+.+-          +|+|.|+-..-+..||-++|+||+||++.+             |..+|++.|
T Consensus       196 f~g~~~~~g~i~lafysg----------lfa~~GWd~lN~vteEiknP~ktLP~Ai~i-------------si~lvt~iY  252 (479)
T KOG1287|consen  196 FEGSDTDVGNIALAFYSG----------LFAFSGWDYLNYVTEEIKNPRRTLPRAILI-------------SIPLVTVIY  252 (479)
T ss_pred             cccCcCchHHHHHHHHHh----------hhcccCchhhccchHhhcCccccchHHHHH-------------hhHHHHHHH
Confidence            778888888899999887          566777777777779999999999999999             899999999


Q ss_pred             HHHHHHHhhccChhhhhcchH---HHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCC
Q psy7925         266 VLTNVAFYTTLSPAEVLNSEA---TFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVT  342 (472)
Q Consensus       266 ~~~~~~~~~~lp~~~l~~~~~---~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k  342 (472)
                      ++.+.+++.++++||+.++.+   .++++..|.++|++.+.+++|++|+.|+.+.+.||.+++++|||+||+.|+++|  
T Consensus       253 il~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~--  330 (479)
T KOG1287|consen  253 VLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFAWAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMIS--  330 (479)
T ss_pred             HHhHhheeEecCHHHhcccchHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhc--
Confidence            999999999999999977654   789999999999999999999999999999999999999999999999999966  


Q ss_pred             CCCchhHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccchhHHHHHH-HHHHHH
Q psy7925         343 KMTPTPAVLTIAFLSLLYLMS-SNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYL-IASVFV  419 (472)
Q Consensus       343 ~~tP~~al~~~~~i~~ii~l~-~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~~~~~il~i-v~~l~l  419 (472)
                       ..+. .-....+.+.+..+. .-..++.++.+.....-++....+..-+.+-|.+ +++...|.=+++..- +..+..
T Consensus       331 -~~~~-TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k-~p~~~rPiKvpl~~p~~~~~~~  406 (479)
T KOG1287|consen  331 -VRRF-TPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWK-HPPLPRPIKVPLFIPILFLLIC  406 (479)
T ss_pred             -CCCC-CChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCCCEeeeeehHHHHHHHH
Confidence             4555 334444444444443 3444577788888888888888888888877643 444556664444443 333333

>PRK10655 potE putrescine transporter; Provisional

Probab=99.55  E-value=1e-13  Score=146.34  Aligned_cols=88  Identities=17%  Similarity=0.308  Sum_probs=69.6

Q ss_pred             hhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHH-
Q psy7925         211 IFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFA-  289 (472)
Q Consensus       211 ~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~-  289 (472)
                      ...+|+|.|+|+....+||.|+|+|++||++..             +.+++.++|++.+.+..+.+|.+|+.++++++. 
T Consensus       196 ~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~-------------~~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~  262 (438)
T PRK10655        196 AMTLWAFLGLESACANSDAVENPERNVPIAVLG-------------GTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGL  262 (438)
T ss_pred             HHHHHHHhhhhhhhhhHHHhhCccccccHHHHH-------------HHHHHHHHHHHHHHHHHhCCCHHHHhhccchHHH
Confidence            346799999999999999999999999999988             889999999999999999999999887666543 


Q ss_pred             --HHHhccch-hHHHHHHHHHhhhc
Q psy7925         290 --NRIFGPIA-WTLPVFVALSTFGG  311 (472)
Q Consensus       290 --~~~~G~~~-~ii~i~~l~s~~~~  311 (472)
                        +...|++. .++.+.++++.+++
T Consensus       263 ~~~~~~g~~~~~~~~~~~~is~~~~  287 (438)
T PRK10655        263 AFAQMFNPTVGKIVMALMVMSCCGS  287 (438)
T ss_pred             HHHHHcChhHHHHHHHHHHHHHHHH
Confidence              34456653 44444444455433

>PRK11387 S-methylmethionine transporter; Provisional

Probab=99.50  E-value=9.9e-14  Score=148.23  Aligned_cols=226  Identities=14%  Similarity=0.132  Sum_probs=176.3

Q ss_pred             hhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHH-
Q psy7925         211 IFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFA-  289 (472)
Q Consensus       211 ~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~-  289 (472)
                      ...+++|.|+|+.+..+||.|+|+|++||++..             +.+.+.++|+..+++....+|.+|...+++++. 
T Consensus       213 ~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~-------------~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~  279 (471)
T PRK11387        213 VAVNFAFSGTELIGIAAGETENPAKVIPVAIRT-------------TIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVL  279 (471)
T ss_pred             HHHHHHHcCHHHHHHHHHHhcChhhHHHHHHHH-------------HHHHHHHHHHHHHHHHheecCccccCccCChHHH
Confidence            346789999999999999999999999999988             888899999999999999999988876555544 


Q ss_pred             --HHHhccch-hHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHhh---
Q psy7925         290 --NRIFGPIA-WTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMS---  363 (472)
Q Consensus       290 --~~~~G~~~-~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l~---  363 (472)
                        +...++++ .++.+.++++.+++.++.+++.||++|+|||||.+||+|+|+| |+++|+++++++.+.+++..+.   
T Consensus       280 ~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~f~~~~-~~~~P~~Ail~~~~~~~l~~~~~~~  358 (471)
T PRK11387        280 VFEKVGIPYAADIFNFVILTAILSAANSGLYASGRMLWSLSNEGTLPACFARLT-KRGIPLTALSVSMLGGLLALFSSVV  358 (471)
T ss_pred             HHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHhc
Confidence              33344443 4577888899999999999999999999999999999999999 6799999999886655544432   


Q ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCC-----CCCCcccch--hHHHHHHHHHHHHHhhcccccch--hH
Q psy7925         364 ---SNIFALINYVGFATWLSIGVGVLCLPVLRYTQPD-----LPRPIKVHL--IFPAAYLIASVFVTLVPMMASPV--ET  431 (472)
Q Consensus       364 ---~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~-----~~~~~~~~~--~~~il~iv~~l~li~~~~~~~~~--~~  431 (472)
                         ..+..+.++.++..++.|++..++.+++|+|+++     .+||||.|.  +.+.++++.+++++.......+.  ..
T Consensus       359 ~~~~~~~~l~~l~~~~~li~y~~~~~~~i~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  438 (471)
T PRK11387        359 APDTVFVALSAISGFAVVAVWLSICASHFMFRRRHLRDGKALSELAYRAPWYPLTPILGFVLCLLACVGLAFDPSQRIAL  438 (471)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCccHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence               1244567888888999999999999998887653     247888887  78888888777765543222221  23


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy7925         432 GIGCLMIATSVPVYMVFIA  450 (472)
Q Consensus       432 ~i~~~v~~lgl~iy~~~~~  450 (472)
                      +....+++++.+.|..++|
T Consensus       439 ~~~~~~~~~~~~~~~~~~~  457 (471)
T PRK11387        439 WCGIPFVALCYGAYYLTQR  457 (471)
T ss_pred             HHHHHHHHHHHHHHHHhcc
Confidence            4555566666666665433

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=99.49  E-value=5.9e-13  Score=141.14  Aligned_cols=90  Identities=19%  Similarity=0.325  Sum_probs=72.9

Q ss_pred             hhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHHH-
Q psy7925         212 FALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFAN-  290 (472)
Q Consensus       212 ~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~~-  290 (472)
                      ..+|+|.|+|+....+||.|+|+|++||++..             +.+.+.++|+..+.+....+|.+|+..+++++.. 
T Consensus       199 ~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~-------------s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~  265 (445)
T PRK10644        199 VTLWSFIGVESASVAAGVVKNPKRNVPIATIG-------------GVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDA  265 (445)
T ss_pred             HHHHHHHhHHHHHHHHHHhhCcccchhHHHHH-------------HHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHH
Confidence            46789999999999999999999999999988             8899999999999999999999998776665543 


Q ss_pred             --HHhccch-hHHHHHHHHHhhhchhh
Q psy7925         291 --RIFGPIA-WTLPVFVALSTFGGVNG  314 (472)
Q Consensus       291 --~~~G~~~-~ii~i~~l~s~~~~~~~  314 (472)
                        ...|+++ .++.+.++++.+++.++
T Consensus       266 ~~~~~g~~~~~~v~~~~~~s~~~~~~~  292 (445)
T PRK10644        266 ARMALGDTAGAIVSFCAAAGCLGSLGG  292 (445)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence              3456654 34555566666666554

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=99.47  E-value=1.1e-12  Score=140.21  Aligned_cols=104  Identities=13%  Similarity=0.148  Sum_probs=90.7

Q ss_pred             chhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHH--
Q psy7925         210 NIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEAT--  287 (472)
Q Consensus       210 ~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~--  287 (472)
                      ....+|+|.|+|+....+||.|| +|++||++..             +.+.+.++|+..+.+..+.+|.+|+++.+++  
T Consensus       201 ~~~~~~~f~G~e~~~~~a~e~k~-~k~ip~ai~~-------------~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~  266 (468)
T TIGR03810       201 MLVTVWVFIGIEGASMLSARAEK-RSDVGKATVI-------------GLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSM  266 (468)
T ss_pred             HHHHHHHHHhHhHHhhhHhhccC-cccchHHHHH-------------HHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchH
Confidence            34567999999999999999998 8999999888             8999999999999999999999999875554  


Q ss_pred             --HHHHHhccch-hHHHHHHHHHhhhchhhhhhhhhHHHHHhh
Q psy7925         288 --FANRIFGPIA-WTLPVFVALSTFGGVNGIILTTSRLFYAGA  327 (472)
Q Consensus       288 --l~~~~~G~~~-~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a  327 (472)
                        ..+...|+++ .++.++++++.+++.++++.+.+|++|+|+
T Consensus       267 ~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~a  309 (468)
T TIGR03810       267 AYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMA  309 (468)
T ss_pred             HHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              3445567765 567888899999999999999999999997

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=99.46  E-value=8.4e-13  Score=141.19  Aligned_cols=223  Identities=13%  Similarity=0.072  Sum_probs=143.2

Q ss_pred             hhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHH---
Q psy7925         211 IFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEAT---  287 (472)
Q Consensus       211 ~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~---  287 (472)
                      ....|+|.|+|+....+||.|+ +|++||++..             +.+++.++|++.+.+..+.+|.+|+.++.++   
T Consensus       206 ~~~~~af~G~e~~~~~a~E~k~-~r~iPrai~~-------------~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~  271 (473)
T TIGR00905       206 LVTLWVFIGIEGAVVSSGRAKN-KSDVGKATVL-------------GTLGALVIYILITLLSLGVLPQQELANLPNPSMA  271 (473)
T ss_pred             HHHHHHHHhHHHHHHHHHHHhc-cccchHHHHH-------------HHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHH
Confidence            3467899999999999999999 9999999998             8899999999999999999999999876665   


Q ss_pred             -HHHHHhccch-hHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHh-hh
Q psy7925         288 -FANRIFGPIA-WTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLM-SS  364 (472)
Q Consensus       288 -l~~~~~G~~~-~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l-~~  364 (472)
                       +.+...|+++ .++.+.++++.+++.++++.+.+|++|+|+|||.+||   ... |.+ |...-.....+..++.. ..
T Consensus       272 ~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amardg~lP~---~~~-~v~-~~~tP~~Ai~~~~~i~~~~~  346 (473)
T TIGR00905       272 AVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAKDGLFPK---IFG-RVN-KNGAPSVALLLTNILIQLFL  346 (473)
T ss_pred             HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH---HHH-hhC-ccCCCHHHHHHHHHHHHHHH
Confidence             3445567765 4577778899999999999999999999999999993   433 554 55544554444444433 33


Q ss_pred             hHH-----HHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccchhHHHHHHHHHHHHHhhcccccchhHH-HHHHHH
Q psy7925         365 NIF-----ALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETG-IGCLMI  438 (472)
Q Consensus       365 ~~~-----~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~~~~~il~iv~~l~li~~~~~~~~~~~~-i~~~v~  438 (472)
                      ...     .+..+..+.....++.......-..+.+++.+.|-+...+.+.+..+..++..+    -.-...+ .....+
T Consensus       347 ~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~  422 (473)
T TIGR00905       347 LLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVGTYPKIKNRKALIVGVIACVYSIW----LLYAAGLKYLLLGF  422 (473)
T ss_pred             HHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccchHHHHHHHHHHHHHH----HHHHhhHHHHHHHH
Confidence            322     122333333333443333333334444332111221112455666665555532    2222222 222223


Q ss_pred             HHHHHHHHHHHHHhccCc
Q psy7925         439 ATSVPVYMVFIAWRNKPK  456 (472)
Q Consensus       439 ~lgl~iy~~~~~~~~~~~  456 (472)
                      .+.......|.+++++++
T Consensus       423 ~~~~~g~~~y~~~~~~~~  440 (473)
T TIGR00905       423 ILYAPGIIFYGRARKERG  440 (473)
T ss_pred             HHHHHHHHHHHHHHHhcC
Confidence            333334455667666654

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=99.41  E-value=3.5e-12  Score=135.00  Aligned_cols=218  Identities=15%  Similarity=0.171  Sum_probs=165.6

Q ss_pred             hhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHH-
Q psy7925         211 IFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFA-  289 (472)
Q Consensus       211 ~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~-  289 (472)
                      ...+|+|.|+|+....+||.|+|+|++||++..             +.+.+.++|++.+.+..+.+|.+|+.++++|+. 
T Consensus       194 ~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~-------------~~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~  260 (435)
T PRK10435        194 LLCLWAFVGVESAAVSTGMVKNPKRTVPLATML-------------GTGLAGIIYIAATQVISGMFPASVMAASGAPFAI  260 (435)
T ss_pred             HHHHHHHhhHHHHHHHHHHhhCccccccHHHHH-------------HHHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHH
Confidence            456899999999999999999999999999988             889999999999999999999999987766544 


Q ss_pred             --HHHhccch-hHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHh----
Q psy7925         290 --NRIFGPIA-WTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLM----  362 (472)
Q Consensus       290 --~~~~G~~~-~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l----  362 (472)
                        +...|+++ .++.+.++++.+++.+++++..+|..++++|||.+||+|+|+| |+++|.++++++.++..++..    
T Consensus       261 ~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG~lP~~f~k~n-k~g~P~~Al~~~~~~~~~l~~~~~~  339 (435)
T PRK10435        261 SASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGNFPKVYGEVD-KNGIPKKGLLLAAVKMTALMILITL  339 (435)
T ss_pred             HHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHH
Confidence              44466665 4566778889999999999999999999999999999999999 899999999988766654332    


Q ss_pred             --------hhhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccchhHHHHHHHHHHHHHhhcccccchhHHHH
Q psy7925         363 --------SSNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMMASPVETGIG  434 (472)
Q Consensus       363 --------~~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~~~~~il~iv~~l~li~~~~~~~~~~~~i~  434 (472)
                              ...++.+.++.++..++.|++...+.+++|  +++.++++  ..+.+.++.+.+++.++      .......
T Consensus       340 ~~~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~ir~~--~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~  409 (435)
T PRK10435        340 MNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLIRFE--GVNIRNFV--SLICSVLGCVFCFIALM------GASSFEL  409 (435)
T ss_pred             HhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchhHHH--HHHHHHHHHHHHHHHHH------HhhHHHH
Confidence                    124667889999999999999999988554  33323322  11455555555555532      1122233


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q psy7925         435 CLMIATSVPVYMVFIAWR  452 (472)
Q Consensus       435 ~~v~~lgl~iy~~~~~~~  452 (472)
                      ..+.+++...|+.|.||+
T Consensus       410 ~~~~~~~~~~~~~~~~~~  427 (435)
T PRK10435        410 AGTFIVSLIILMFYARKM  427 (435)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            334555555666554443

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=99.38  E-value=1.2e-11  Score=135.40  Aligned_cols=170  Identities=19%  Similarity=0.240  Sum_probs=150.1

Q ss_pred             hhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHHHH
Q psy7925         212 FALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFANR  291 (472)
Q Consensus       212 ~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~~~  291 (472)
                      ..+++|.||++....+||.|+|+|++||++..             +.++++++|...+.+..+.+|.+|+..+ +++...
T Consensus       239 ~~~faf~Gfd~v~~~aeE~knP~r~iP~aii~-------------sl~i~~vlY~lv~~~l~~~vp~~~l~~~-~p~~~a  304 (557)
T TIGR00906       239 TCFFAFIGFDAIATTGEEVKNPQRAIPIGIVT-------------SLLVCFVAYFLMSAALTLMMPYYLLDPD-APFPVA  304 (557)
T ss_pred             HHHHHHhhHHHHHHhHHhccCccccccHHHHH-------------HHHHHHHHHHHHHHHHhccccHHHhCcC-cHHHHH
Confidence            35688999999999999999999999999999             9999999999999999999999987643 343322


Q ss_pred             H---hccch-hHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHhhhhHH
Q psy7925         292 I---FGPIA-WTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIF  367 (472)
Q Consensus       292 ~---~G~~~-~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l~~~~~  367 (472)
                      .   ..++. .++.++++.+.+++.++.+++.+|++|+|+|||.+|++|+|+|||+++|++++++..+++.++.+..+++
T Consensus       305 ~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~  384 (557)
T TIGR00906       305 FEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLK  384 (557)
T ss_pred             HHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHH
Confidence            2   22332 4567788889999999999999999999999999999999999999999999999999998888887889


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHhhhhcC
Q psy7925         368 ALINYVGFATWLSIGVGVLCLPVLRYTQ  395 (472)
Q Consensus       368 ~l~~l~~~~~l~~yil~~~a~~~l~~~~  395 (472)
                      .+.++.+++.++.|.+...+.+++|+|+
T Consensus       385 ~l~~l~sig~ll~y~lv~~~~l~lR~~~  412 (557)
T TIGR00906       385 ALVDLLSIGTLLAYSLVAACVLILRYQP  412 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            9999999999999999999999999764

>PRK10580 proY putative proline-specific permease; Provisional

Probab=99.36  E-value=6.6e-12  Score=133.64  Aligned_cols=224  Identities=17%  Similarity=0.152  Sum_probs=170.2

Q ss_pred             hhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHHH
Q psy7925         211 IFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFAN  290 (472)
Q Consensus       211 ~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~~  290 (472)
                      ...+++|.|+|+....+||.|+|+|++||++..             +++.+.++|+.........+|.+|+....+++..
T Consensus       206 ~~~~fsf~G~e~~~~~a~E~knP~k~iPrAi~~-------------~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~  272 (457)
T PRK10580        206 QMVMFAYGGIEIIGITAGEAKDPEKSIPRAINS-------------VPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVL  272 (457)
T ss_pred             HHHHHHHhCHHHHHHHHHHhcChhhHHHHHHHH-------------HHHHHHHHHHHHHHHHheecccCCCCccCChHHH
Confidence            456789999999999999999999999999887             7778889999999888888899998765555443


Q ss_pred             HH--hccc--hhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHhh---
Q psy7925         291 RI--FGPI--AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMS---  363 (472)
Q Consensus       291 ~~--~G~~--~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l~---  363 (472)
                      ..  .|..  ..++.+.++.+.+++.++++++.||.+++|+|||.+||+|+|+| |+++|+++++++.+..++....   
T Consensus       273 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~~~~kv~-~~~~P~~Ai~~~~~~~~~~~~~~~~  351 (457)
T PRK10580        273 TFQHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFSKTS-RRGIPWVTVLVMTTALLFAVYLNYI  351 (457)
T ss_pred             HHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHhc
Confidence            22  2222  24466667789999999999999999999999999999999999 5899999999887655443321   


Q ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCC---CCCCcccch--hHHHHHHHHHHHHHhhc-ccc-cchhHHH
Q psy7925         364 ---SNIFALINYVGFATWLSIGVGVLCLPVLRYTQPD---LPRPIKVHL--IFPAAYLIASVFVTLVP-MMA-SPVETGI  433 (472)
Q Consensus       364 ---~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~---~~~~~~~~~--~~~il~iv~~l~li~~~-~~~-~~~~~~i  433 (472)
                         ..++.+.++.++..++.|.+...+.+++|+|+++   .++|||.|.  ..+.++++.+.+++... ..+ .+...+.
T Consensus       352 ~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~lr~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  431 (457)
T PRK10580        352 MPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVKALKFKVPGGVATTIGGLIFLVFIIGLIGYHPDTRISLYV  431 (457)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccCCccHHHHHHHHHHHHHHHHHHHCccHHHHHHH
Confidence               3356788999999999999999999999977432   234788775  66666666666554332 122 2233456


Q ss_pred             HHHHHHHHHHHHHHH
Q psy7925         434 GCLMIATSVPVYMVF  448 (472)
Q Consensus       434 ~~~v~~lgl~iy~~~  448 (472)
                      ...++.++.+.|..+
T Consensus       432 ~~~~~~~~~~~y~~~  446 (457)
T PRK10580        432 GFAWIVLLLIGWMFK  446 (457)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            666677777777654

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=99.35  E-value=5.6e-12  Score=134.78  Aligned_cols=197  Identities=16%  Similarity=0.161  Sum_probs=159.4

Q ss_pred             chhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHH
Q psy7925         210 NIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFA  289 (472)
Q Consensus       210 ~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~  289 (472)
                      .....|+|.|+|+....+||.|+|+|++||++..             +.+.+.++|.+...+.....|.||+.++++++.
T Consensus       217 ~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~-------------~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~  283 (469)
T PRK11049        217 FQIAVFAFVGIELVGTTAAETKDPEKSLPRAINS-------------IPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFV  283 (469)
T ss_pred             HHHHHHHHhcHHHHHHHHHHhcCHhhHHHHHHHH-------------HHHHHHHHHHHHHHHHeeecCccccCccCCcHH
Confidence            3456899999999999999999999999999865             678889999999999998899999877666654


Q ss_pred             HHH---hccc-hhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHH---h
Q psy7925         290 NRI---FGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYL---M  362 (472)
Q Consensus       290 ~~~---~G~~-~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~---l  362 (472)
                      ...   .++. +.++.+.++++.+++.++.+++.||++|+|+|||.+|++|+|+| |+++|+++++++.++..+..   .
T Consensus       284 ~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~kv~-~~~tP~~Ai~~~~~~~~~~~~~~~  362 (469)
T PRK11049        284 ELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKAFAKLS-KRAVPAKGLTFSCICLLGGVVLLY  362 (469)
T ss_pred             HHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHH
Confidence            433   3333 35677788899999999999999999999999999999999999 55999999998877654322   1


Q ss_pred             h-----hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCC--CCcccch--hHHHHHHHHHHHHH
Q psy7925         363 S-----SNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLP--RPIKVHL--IFPAAYLIASVFVT  420 (472)
Q Consensus       363 ~-----~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~--~~~~~~~--~~~il~iv~~l~li  420 (472)
                      .     ..++.+.+..++...+.|++...+.+++|+|+|+.+  ||||.|.  +.++++++.+.+.+
T Consensus       363 ~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~p~~~~~~pf~~p~~~~~~~~~~~~~~~~~  429 (469)
T PRK11049        363 VNPSVIGAFTLVTTVSAILFMFVWTIILCSYLVYRKQRPHLHEKSIYKMPLGKLMCWVCMAFFAFVL  429 (469)
T ss_pred             hCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccCcCcchHHHHHHHHHHHHH
Confidence            1     245667788888999999999999999999988765  5798876  55555555554443

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=99.33  E-value=3.7e-11  Score=128.53  Aligned_cols=58  Identities=10%  Similarity=0.219  Sum_probs=53.5

Q ss_pred             hhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcc
Q psy7925         214 LINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNS  284 (472)
Q Consensus       214 l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~  284 (472)
                      +++|.|+|+....+||.|+|+|++||++..             +++.+.++|...+.+....+|.+|+..+
T Consensus       204 ~~af~G~e~~~~~a~E~knP~r~iPrAi~~-------------~~~~~~~~y~l~~~~~~~~~~~~~~~~~  261 (474)
T TIGR03813       204 FLFYAGMEMNAVHVKDVDNPDKNYPIAILI-------------AALGTVLIFVLGTLAIAFIIPREDISLT  261 (474)
T ss_pred             HHHHhchhHhHHHHHhccCcccchhHHHHH-------------HHHHHHHHHHHHHHHHHhccCHhhcccc
Confidence            578999999999999999999999999998             8899999999999999999999987543

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>PRK15049 L-asparagine permease; Provisional

Probab=99.33  E-value=9.1e-12  Score=134.42  Aligned_cols=203  Identities=13%  Similarity=0.132  Sum_probs=166.2

Q ss_pred             hhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHHHH
Q psy7925         212 FALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFANR  291 (472)
Q Consensus       212 ~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~~~  291 (472)
                      ...++|.|+|+....+||.|+|+|++||++..             +.+.+.++|+.........+|.+|+..+.+|+...
T Consensus       228 ~~~faf~G~e~i~~~aeE~knP~r~iPrAi~~-------------~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~  294 (499)
T PRK15049        228 GVVFAFASIEMVGTAAGECKDPQTMVPKAINS-------------VIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTF  294 (499)
T ss_pred             HHHHHHhhHHHHHHHHHHhcChhhHHHHHHHH-------------HHHHHHHHHHHHHHHHheecchhccCcCCCHHHHH
Confidence            45688999999999999999999999999988             78889999999999999999999988777766554


Q ss_pred             H---hccc-hhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHh-----
Q psy7925         292 I---FGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLM-----  362 (472)
Q Consensus       292 ~---~G~~-~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l-----  362 (472)
                      +   .+++ +.++.+.++++.+++.++.+++.||++|+|||||.+||+|+|+| |+++|.++++++.+++++..+     
T Consensus       295 ~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP~~f~kv~-k~~~P~~Ail~~~~i~~l~~~l~~~~  373 (499)
T PRK15049        295 FSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPSFMAKMS-RQHVPYAGILATLVVYVVGVFLNYLV  373 (499)
T ss_pred             HHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence            3   3333 35677888899999999999999999999999999999999999 889999999988777655432     


Q ss_pred             -hhhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCC---CCCCcccch--hHHHHHHHHHHHHHhhcccccc
Q psy7925         363 -SSNIFALINYVGFATWLSIGVGVLCLPVLRYTQPD---LPRPIKVHL--IFPAAYLIASVFVTLVPMMASP  428 (472)
Q Consensus       363 -~~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~---~~~~~~~~~--~~~il~iv~~l~li~~~~~~~~  428 (472)
                       ...++.+.++.++..++.|.+..++.+++|++.++   .++|||.|.  +.+.++++.+++++....+..|
T Consensus       374 ~~~~f~~l~~~~~~~~li~y~~~~~~~l~~R~~~~~~~~~~~pf~~~~~p~~~~~~l~~~~~~~~~~~~~~~  445 (499)
T PRK15049        374 PSRVFEIVLNFASLGIIASWAFIIVCQMRLRKAIKEGKAADVSFKLPGAPFTSWLTLLFLLSVLVLMAFDYP  445 (499)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccCccHHHHHHHHHHHHHHHHHHHcCc
Confidence             13477889999999999999999999999876432   356899886  5666666666555444444434

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=99.32  E-value=8.8e-12  Score=132.36  Aligned_cols=223  Identities=18%  Similarity=0.174  Sum_probs=161.9

Q ss_pred             hhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcch-HHH-
Q psy7925         211 IFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSE-ATF-  288 (472)
Q Consensus       211 ~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~-~~l-  288 (472)
                      ...+|+|.|+|.....+||.|+|+|++||++..             +...+.++|+.......+.+|.||....+ +++ 
T Consensus       208 ~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~-------------~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~  274 (452)
T TIGR01773       208 LVTMFSFMGTEIVTIAAAESSNPIKSITRATNS-------------VIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYV  274 (452)
T ss_pred             HHHHHHhccHHHHhHHHHhhcChhhHHHHHHHH-------------HHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHH
Confidence            346889999999999999999999999999866             67778889999888888888876643222 132 


Q ss_pred             --HHHHhccch-hHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHhh--
Q psy7925         289 --ANRIFGPIA-WTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMS--  363 (472)
Q Consensus       289 --~~~~~G~~~-~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l~--  363 (472)
                        .+...++.+ .++.+.++++.+++.++.+++.||.+++++|||.+||+|+|+| |+++|+++++++.+++++..+.  
T Consensus       275 ~~~~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lP~~~~~v~-~~~~P~~Ail~~~~~~~~~~l~~~  353 (452)
T TIGR01773       275 AVLELLGIPHAKLIMDFVVLTAVLSCLNSALYTTSRMLYSLAERGDAPRVFMKLN-KKGVPVQAVLASTFFSFLTVVVNY  353 (452)
T ss_pred             HHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHc
Confidence              233333443 4567778889999999999999999999999999999999999 7899999999998888776553  


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCC--cccch--hHHHHHHHHHHHHHhhc-cccc-chhHHH
Q psy7925         364 ----SNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRP--IKVHL--IFPAAYLIASVFVTLVP-MMAS-PVETGI  433 (472)
Q Consensus       364 ----~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~--~~~~~--~~~il~iv~~l~li~~~-~~~~-~~~~~i  433 (472)
                          ..++.+.+..+...++.|.+...+.+++|+|+|+.+|+  +|.+.  +.+..+++.+.+++... +.+. ......
T Consensus       354 ~~~~~~f~~l~~~~~~~~~~~y~~~~~~~i~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  433 (452)
T TIGR01773       354 FAPDKVFLFLVNSSGAIALLVYLVIAVSQLRMRKKLKANGEAIKIRMWLYPWLTWLVIIFICGILVSMLFIPSMRDEVLL  433 (452)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCCccHHHHHHHHHHHHHHHHHHHcccccHHHHH
Confidence                23456778888888999999999999999877665454  44442  44444444443333322 1222 222334


Q ss_pred             HHHHHHHHHHHHHH
Q psy7925         434 GCLMIATSVPVYMV  447 (472)
Q Consensus       434 ~~~v~~lgl~iy~~  447 (472)
                      ...+.......|++
T Consensus       434 ~~~~~~~~~~~y~~  447 (452)
T TIGR01773       434 TGLLTIIVLCSYLV  447 (452)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44444444544544

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK11021 putative transporter; Provisional

Probab=99.31  E-value=9.3e-12  Score=130.57  Aligned_cols=189  Identities=19%  Similarity=0.208  Sum_probs=155.6

Q ss_pred             hhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHH---
Q psy7925         211 IFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEAT---  287 (472)
Q Consensus       211 ~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~---  287 (472)
                      ...+|+|.|+|+....+||.|+|+|++||++.+             +.+.++++|+..+.+.....|.+|..+.+++   
T Consensus       184 ~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~-------------~~~~~~~lYil~~~~~~~~~~~~~~~~~~~~~~~  250 (410)
T PRK11021        184 GVMFWCFVGIEAFAHLASEFKNPERDFPRALMI-------------GLLLAGLVYWACTVVVLHFPAYGDKQAAAASLPG  250 (410)
T ss_pred             HHHHHHHhcHHHHHhhHHhccCccccccHHHHH-------------HHHHHHHHHHHHHHHHHhcCCCcchhhccccHHH
Confidence            446789999999999999999999999999998             8899999999999888777766555433332   


Q ss_pred             HHHHHhccch-hHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHhh---
Q psy7925         288 FANRIFGPIA-WTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMS---  363 (472)
Q Consensus       288 l~~~~~G~~~-~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l~---  363 (472)
                      ..+...|+.+ .++.+..+++.+++.++++++.+|++|+|+|||.+||+|+|+| |+++|.++++++.+++.+..+.   
T Consensus       251 ~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k~~-~~~tP~~ail~~~~i~~~~~l~~~~  329 (410)
T PRK11021        251 IFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLARLS-ARGVPVNALNAVLGCCAVSILLIYA  329 (410)
T ss_pred             HHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHhhc-cCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            3445566664 4566677889999999999999999999999999999999999 6799999999988777665542   


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccchhHHHHHHHHHHHHHhh
Q psy7925         364 --SNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLV  422 (472)
Q Consensus       364 --~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~~~~~il~iv~~l~li~~  422 (472)
                        .+++.+.+..+...++.|.+...+.+++++|++         ..+++++.+.|+++++.
T Consensus       330 ~~~~~~~l~~~~~~~~li~y~~~~~a~~~l~~~~~---------~~~~~~~~~~~~~~~~~  381 (410)
T PRK11021        330 LGLNLEALIAYANGIFVLIYLLCMLAACKLLKGRY---------RPLAVLGCLLCLLLLVM  381 (410)
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HHHHHHHHHHHHHHHHH
Confidence              467888899999999999999999998876531         25788888888888553

>KOG2082|consensus

Probab=99.29  E-value=3.1e-11  Score=131.07  Aligned_cols=148  Identities=13%  Similarity=0.014  Sum_probs=102.6

Q ss_pred             HHHHHhhhchhhhhhhhhHHHHHhhhcCCCC--hhhhcccCCCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy7925         303 FVALSTFGGVNGIILTTSRLFYAGACEGQMP--EILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWLS  380 (472)
Q Consensus       303 ~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP--~~f~kv~~k~~tP~~al~~~~~i~~ii~l~~~~~~l~~l~~~~~l~~  380 (472)
                      +...|++|+.+-.+.++.|++++.|||+++|  +.|+|.. +++-|+++++++.+++-+.++.++.+.+..+.++.++++
T Consensus       502 GsFlST~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~-~ngEPt~aLlLT~~Ice~gILigslD~iApilsmFFLMC  580 (1075)
T KOG2082|consen  502 GSFLSTCGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGK-ANGEPTWALLLTAIICECGILIGSLDLIAPILSMFFLMC  580 (1075)
T ss_pred             hHHHHHhHHHHhhhcCcHHHHHHHhhcCccchhhhhcccc-CCCCccHHHHHHHHHHHhhheeechhHHHHHHHHHHHHH
Confidence            3344444444444444444444444444544  4567766 788999999999999999999999999999999999999


Q ss_pred             HHHHHhHHHhhh-hcCCCCCCCcccc-hhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHhccCcc
Q psy7925         381 IGVGVLCLPVLR-YTQPDLPRPIKVH-LIFPAAYLIASVFVTLVPMMASPVETGIGCLMIATSVPVYMVFIAWRNKPKV  457 (472)
Q Consensus       381 yil~~~a~~~l~-~~~~~~~~~~~~~-~~~~il~iv~~l~li~~~~~~~~~~~~i~~~v~~lgl~iy~~~~~~~~~~~~  457 (472)
                      |.+.+++....- .|.|.++..||.. +.+..++..+|+.+.+.      ..+...++...++.++|-+..++-.++.|
T Consensus       581 Y~fVNLaCavqtLLrtPnWRPRfkyyHW~LSflG~sLC~~iMF~------~SWyyAlvAm~~a~~IYKYiEykGAeKEW  653 (1075)
T KOG2082|consen  581 YLFVNLACAVQTLLRTPNWRPRFKYYHWSLSFLGASLCLAIMFI------SSWYYALVAMLIAGVIYKYIEYKGAEKEW  653 (1075)
T ss_pred             HHHHhHHHHHHHHhcCCCCCccchhhhhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhccccchh
Confidence            999999876633 3556665556544 47889999999888432      12234555566677778766665555544

>PRK10746 putative transport protein YifK; Provisional

Probab=99.29  E-value=1.9e-11  Score=130.58  Aligned_cols=228  Identities=14%  Similarity=0.107  Sum_probs=174.7

Q ss_pred             hhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHHHH
Q psy7925         212 FALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFANR  291 (472)
Q Consensus       212 ~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~~~  291 (472)
                      ...++|.|+|.....+||.|+|+|++||++..             ++..+.++|+....+....+|.+|+..+++|+...
T Consensus       208 ~~~faf~G~e~v~~~a~E~knP~k~iP~Ai~~-------------~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~  274 (461)
T PRK10746        208 IVVASYQGVELIGITAGEAKNPQVTLRSAVGK-------------VLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLT  274 (461)
T ss_pred             HHHHHhcCHHHHHHHHHHhcChhhHHHHHHHH-------------HHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHH
Confidence            45788999999999999999999999999887             77888899999999999999999988766665543


Q ss_pred             H---hccc-hhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHh----h
Q psy7925         292 I---FGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLM----S  363 (472)
Q Consensus       292 ~---~G~~-~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l----~  363 (472)
                      +   ..+. +.++.+.++++.+++.|+.+++.||.+|++||||++|++|+|+| |+++|++++++..+...+...    .
T Consensus       275 ~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~~~~~~~-~~g~P~~al~~~~~~~~l~~~~~~~~  353 (461)
T PRK10746        275 FAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVS-RHGVPVAGVAVSILILLVGSCLNYII  353 (461)
T ss_pred             HHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHHhc
Confidence            3   2222 34577788889999999999999999999999999999999999 889999999887544333211    1


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCC--CCCCcccch--hHHHHHHHHHHHHHhhccccc--chhHHH
Q psy7925         364 ----SNIFALINYVGFATWLSIGVGVLCLPVLRYTQPD--LPRPIKVHL--IFPAAYLIASVFVTLVPMMAS--PVETGI  433 (472)
Q Consensus       364 ----~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~--~~~~~~~~~--~~~il~iv~~l~li~~~~~~~--~~~~~i  433 (472)
                          ..++.+.++.++...+.|++...+.+++||++|+  .++|||.|.  +.+.++++.++.++.......  ......
T Consensus       354 ~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (461)
T PRK10746        354 PNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHKAAIASHPFRSILFPWANYLTMAFLICVLIGMYFNEDTRMSLFV  433 (461)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcCCCccHHHHHHHHHHHHHHHHHHHCccHHHHHHH
Confidence                2356678899999999999999999999988775  357888776  555555555555533322222  134455


Q ss_pred             HHHHHHHHHHHHHHHHHHhc
Q psy7925         434 GCLMIATSVPVYMVFIAWRN  453 (472)
Q Consensus       434 ~~~v~~lgl~iy~~~~~~~~  453 (472)
                      .+..+.+..+.|..+++++|
T Consensus       434 ~~~~~~~~~~~y~~~~~~~~  453 (461)
T PRK10746        434 GIIFLLAVTLIYKVFGLNRH  453 (461)
T ss_pred             HHHHHHHHHHHHHHHHhhhh
Confidence            55666667777776655543

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=99.23  E-value=5.1e-11  Score=126.75  Aligned_cols=99  Identities=12%  Similarity=0.071  Sum_probs=80.0

Q ss_pred             chhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcch-H--
Q psy7925         210 NIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSE-A--  286 (472)
Q Consensus       210 ~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~-~--  286 (472)
                      ....+|+|.|+|.....+||.|+|+|++||++..             +...+.++|+....+....+|.+|.+..+ +  
T Consensus       187 ~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~-------------~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~  253 (446)
T PRK10197        187 MLITMFSFMGAEIVTIAAAESDTPEKHIVRATNS-------------VIWRISIFYLCSIFVVVALIPWNMPGLKAVGSY  253 (446)
T ss_pred             HHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHH-------------HHHHHHHHHHHHHHHHheecCcCcccccccCcH
Confidence            3446789999999999999999999999999888             88899999999999999999987643221 1  


Q ss_pred             -HHHHHHhccch-hHHHHHHHHHhhhchhhhhhhhhH
Q psy7925         287 -TFANRIFGPIA-WTLPVFVALSTFGGVNGIILTTSR  321 (472)
Q Consensus       287 -~l~~~~~G~~~-~ii~i~~l~s~~~~~~~~~~~~SR  321 (472)
                       ...+...++.+ .++.+.++++.+++.|+++++.+|
T Consensus       254 ~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR  290 (446)
T PRK10197        254 RSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASR  290 (446)
T ss_pred             HHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             33444455554 456777888999999999999988

>PRK10249 phenylalanine transporter; Provisional

Probab=99.22  E-value=1.7e-11  Score=130.70  Aligned_cols=70  Identities=11%  Similarity=0.093  Sum_probs=60.6

Q ss_pred             chhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHH
Q psy7925         210 NIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFA  289 (472)
Q Consensus       210 ~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~  289 (472)
                      .....++|.|+|+....+||.++|+|++||++..             +.+.+.++|++...+....+|.+|+..+++|+.
T Consensus       215 ~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai~~-------------~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~  281 (458)
T PRK10249        215 LAVIMFSFGGLELIGITAAEARDPEKSIPKAVNQ-------------VVYRILLFYIGSLVVLLALYPWVEVKSNSSPFV  281 (458)
T ss_pred             HHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHHHH-------------HHHHHHHHHHHHHHHHheeccccccCccCCcHH
Confidence            3556889999999999999999999999999988             889999999999999999999988876666665


Q ss_pred             HHH
Q psy7925         290 NRI  292 (472)
Q Consensus       290 ~~~  292 (472)
                      ..+
T Consensus       282 ~~~  284 (458)
T PRK10249        282 MIF  284 (458)
T ss_pred             HHH
Confidence            544

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=99.21  E-value=9.3e-11  Score=125.30  Aligned_cols=234  Identities=15%  Similarity=0.161  Sum_probs=175.9

Q ss_pred             cchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhh--hhcc--
Q psy7925         209 SNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAE--VLNS--  284 (472)
Q Consensus       209 ~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~--l~~~--  284 (472)
                      +....+|+|.|+|.....+||.|+|+|++||++..             +.+.+.++|....++....+|.+|  +.++  
T Consensus       202 ~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~-------------~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~  268 (478)
T TIGR00913       202 VFVTAAFSFGGTELVALTAGEAANPRKSIPRAAKR-------------TFWRILVFYILTLFLIGFLVPYNDPRLLSSSS  268 (478)
T ss_pred             HHHHHHhhhccHHHHHHHHHhhcChhhHHHHHHHH-------------HHHHHHHHHHHHHHHheeeccCCChhhccccc
Confidence            34456789999999999999999999999999998             889999999999888888888665  3332  


Q ss_pred             -----hHHHH---HHHhccc-hhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHH
Q psy7925         285 -----EATFA---NRIFGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAF  355 (472)
Q Consensus       285 -----~~~l~---~~~~G~~-~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~  355 (472)
                           ++|+.   +...+++ +.++.+.++++.+++.++++++.||++|+++|||.+|++|+|+| |+++|+++++++.+
T Consensus       269 ~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~f~k~~-~~~~P~~Ai~~~~~  347 (478)
T TIGR00913       269 SSDSAASPFVIAIQNHGIKVLPHIFNAVILISVLSAANSSLYASSRTLYALAHQGLAPKIFAYVD-RRGVPYVAVIVSSL  347 (478)
T ss_pred             CCCcCCCcHHHHHHHcCCchHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhCCcccHHHHhhC-CCCCCHHHHHHHHH
Confidence                 13433   2222233 34677788899999999999999999999999999999999999 78999999999988


Q ss_pred             HHHHHHhh------hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-----CCCCCCCcccch--hHHHHHHHHHHHHHhh
Q psy7925         356 LSLLYLMS------SNIFALINYVGFATWLSIGVGVLCLPVLRYT-----QPDLPRPIKVHL--IFPAAYLIASVFVTLV  422 (472)
Q Consensus       356 i~~ii~l~------~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~-----~~~~~~~~~~~~--~~~il~iv~~l~li~~  422 (472)
                      ++++..+.      ..++.+.++.+....+.|++..++.+++|++     +++.+||||.|.  +.+.++++.++++++.
T Consensus       348 ~~~l~~l~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~i~~r~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  427 (478)
T TIGR00913       348 FGLLAFLAVSKKEAEVFTWLLNISGLSGFFTWMCICLSHIRFRKAMKAQGRSLDELPYKSQTGPYGSYYALFFNILILIA  427 (478)
T ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCccCCCcchHHHHHHHHHHHHHHH
Confidence            87655442      2467788999999999999999999998875     234468899887  6666666666555443


Q ss_pred             ccc-------ccchhHHHHHHHHHHHHHHHHHHHHHhccCc
Q psy7925         423 PMM-------ASPVETGIGCLMIATSVPVYMVFIAWRNKPK  456 (472)
Q Consensus       423 ~~~-------~~~~~~~i~~~v~~lgl~iy~~~~~~~~~~~  456 (472)
                      ..+       .+............+.+.+|..++.++|+++
T Consensus       428 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (478)
T TIGR00913       428 QGYVAFAPVKFSAKSFFEAYLSLPIFIALYIGHKVYKRDKL  468 (478)
T ss_pred             HHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence            222       1222333445555666666776666554443

>PRK10238 aromatic amino acid transporter; Provisional

Probab=99.20  E-value=4.1e-11  Score=127.81  Aligned_cols=196  Identities=15%  Similarity=0.175  Sum_probs=158.6

Q ss_pred             hhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHHHHH
Q psy7925         213 ALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFANRI  292 (472)
Q Consensus       213 ~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~~~~  292 (472)
                      ..|+|.|+|.....+||.|+|+|++||++..             +...+.++|+.........+|.+|+.++++|+...+
T Consensus       209 ~~~af~G~e~~~~~aeE~knP~r~iPrAi~~-------------~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~  275 (456)
T PRK10238        209 IMFSFGGLELVGITAAEADNPEQSIPKATNQ-------------VIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIF  275 (456)
T ss_pred             HHHHhcCHHHHHHHHHhhcChhhHHHHHHHH-------------HHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHH
Confidence            6799999999999999999999999999876             677788889888888888889999877666665543


Q ss_pred             --hcc-c-hhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHhh-----
Q psy7925         293 --FGP-I-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMS-----  363 (472)
Q Consensus       293 --~G~-~-~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l~-----  363 (472)
                        .|. + ..++.+.++++.+++.++.+++.||.+|+++|||.+|++|+|+| |+++|+++++++.+++.+..+.     
T Consensus       276 ~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP~~f~kv~-~~~~P~~Ail~~~~i~~l~~l~~~~~~  354 (456)
T PRK10238        276 HELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVD-KRGVPVNTILVSALVTALCVLINYLAP  354 (456)
T ss_pred             HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcCh
Confidence              222 2 23466778889999999999999999999999999999999999 6799999999998888776553     


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCC--CCCcccch--hHHHHHHHHHHHHHhh
Q psy7925         364 -SNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDL--PRPIKVHL--IFPAAYLIASVFVTLV  422 (472)
Q Consensus       364 -~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~--~~~~~~~~--~~~il~iv~~l~li~~  422 (472)
                       ..++.+.++.+...++.|.+...+.+++||++++.  +++++.|+  +.+.++++.+.+.++.
T Consensus       355 ~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  418 (456)
T PRK10238        355 ESAFGLLMALVVSALVINWAMISLAHMKFRRAKQEQGVVTRFPALLYPLGNWICLLFMAAVLVI  418 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCCccHHHHHHHHHHHHHHHH
Confidence             35778889999999999999999999999876542  34556544  5666666655554433

>KOG1288|consensus

Probab=99.15  E-value=9.2e-10  Score=119.06  Aligned_cols=204  Identities=17%  Similarity=0.103  Sum_probs=143.3

Q ss_pred             hhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHHHHh
Q psy7925          30 VTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFANRI  109 (472)
Q Consensus        30 ~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (472)
                      ...|...+...+=+-.|.-.-+++++|.|+|.|.|||+.+.++....+.|+++.+......|+..+.++-..+...    
T Consensus       293 ~~~F~~~FgV~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~v~~~i----  368 (945)
T KOG1288|consen  293 YEDFASTFGVFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYDVMMHI----  368 (945)
T ss_pred             ceehhhhheeeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchhheeec----
Confidence            3455555555555666777789999999999999999999999999999999999999999987776654433221    


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHhHhhhccC
Q psy7925         110 FGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQVTKM  189 (472)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (472)
                       ....+.+.+.+....+.+-++.+.+.||++.++|||.++|..+                                    
T Consensus       369 -sl~p~fi~iGi~sttlfss~s~liGasrvL~alakD~lfg~ll------------------------------------  411 (945)
T KOG1288|consen  369 -SLHPPFILIGILSTTLFSSMSGLIGASRVLEALAKDDLFGGLL------------------------------------  411 (945)
T ss_pred             -cccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhh------------------------------------
Confidence             1112333333333444444444555555555555555554222                                    


Q ss_pred             CCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHH
Q psy7925         190 TPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTN  269 (472)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~  269 (472)
                                                                                                      
T Consensus       412 --------------------------------------------------------------------------------  411 (945)
T KOG1288|consen  412 --------------------------------------------------------------------------------  411 (945)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhH
Q psy7925         270 VAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPA  349 (472)
Q Consensus       270 ~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~a  349 (472)
                                                                                       .|.|.....+.|+.+
T Consensus       412 -----------------------------------------------------------------~fak~~s~~~nP~~a  426 (945)
T KOG1288|consen  412 -----------------------------------------------------------------FFAKGSSYDGNPYVA  426 (945)
T ss_pred             -----------------------------------------------------------------eeeeccccCCCceee
Confidence                                                                             345555578899999


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcC-CCCCCCcccch-hHHHHHHHHHHHH
Q psy7925         350 VLTIAFLSLLYLMSSNIFALINYVGFATWLSIGVGVLCLPVLRYTQ-PDLPRPIKVHL-IFPAAYLIASVFV  419 (472)
Q Consensus       350 l~~~~~i~~ii~l~~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~-~~~~~~~~~~~-~~~il~iv~~l~l  419 (472)
                      +.++.++.-+..+.++++.+.++.++.++++|..++++.+.+.... |..+..||..- --++++.+.++.+
T Consensus       427 v~vtw~lvqlvll~g~~N~iA~~it~~FLlty~~vNLacl~LeissAPNFRPtFkyF~w~TclvG~l~s~~m  498 (945)
T KOG1288|consen  427 VGVTWLLVQLVLLWGDINKIASMITMTFLLTYGAVNLACLLLEISSAPNFRPTFKYFNWHTCLVGVLLSLGM  498 (945)
T ss_pred             eeHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhhHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999988877654 44444454432 3455555555554

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=99.15  E-value=5.9e-10  Score=116.79  Aligned_cols=85  Identities=24%  Similarity=0.372  Sum_probs=66.5

Q ss_pred             hhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchH----
Q psy7925         211 IFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEA----  286 (472)
Q Consensus       211 ~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~----  286 (472)
                      ...+++|.|+|+....+||.|+  |++||++..             +.+.+.++|.+.+++....+|.+|..+.++    
T Consensus       195 ~~~~~~~~G~e~~~~~~~E~k~--k~ip~ai~~-------------~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~  259 (426)
T PF13520_consen  195 SVAFFAFSGFEAIASLAEENKN--KTIPRAIII-------------SIIIVAIIYILFSIALLGALPDDELANSSNSPSP  259 (426)
T ss_dssp             HHHGGGGTTTTHHHHGGGGSSS--HHHHHHHHH-------------HHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCH
T ss_pred             HHHHhhcccccccccccccccc--hhheeeccc-------------chhHHHHHHhhhhheeeecccchhhhcccccccc
Confidence            3468999999999999999554  899999998             899999999999999999999999876432    


Q ss_pred             --HHHHHHhccch-hHHHHHHHHHhhh
Q psy7925         287 --TFANRIFGPIA-WTLPVFVALSTFG  310 (472)
Q Consensus       287 --~l~~~~~G~~~-~ii~i~~l~s~~~  310 (472)
                        ...+...+++. +++.+.++++.++
T Consensus       260 ~~~~~~~~~~~~~~~~~~i~~~~~~~~  286 (426)
T PF13520_consen  260 FAVLASAVGGSWLAIIVSIAAILSLFG  286 (426)
T ss_dssp             HHHHHHHHHCCTHHHHHHHHHHHHHHH
T ss_pred             cchhhcccccccccccccccccccccc
Confidence              44555555553 4455556666655

...

>PRK10836 lysine transporter; Provisional

Probab=99.14  E-value=1.1e-10  Score=125.53  Aligned_cols=219  Identities=16%  Similarity=0.179  Sum_probs=171.4

Q ss_pred             hhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhh---cc-----h
Q psy7925         214 LINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVL---NS-----E  285 (472)
Q Consensus       214 l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~---~~-----~  285 (472)
                      .|+|.|+|.....+||.|+|+|++||++..             +.+.+.++|++.+.+....+|.+|.+   ++     .
T Consensus       215 ~faf~G~e~~~~~a~E~knP~r~iPrAi~~-------------~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~  281 (489)
T PRK10836        215 GFSFQGTELIGIAAGESEDPAKNIPRAVRQ-------------VFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISV  281 (489)
T ss_pred             HHHHccHHHHHHHHHHhcCHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHheecCCCChhhhccccccccC
Confidence            589999999999999999999999999988             88999999999999999999976532   11     2


Q ss_pred             HHHHHHH---hccc-hhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHH
Q psy7925         286 ATFANRI---FGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYL  361 (472)
Q Consensus       286 ~~l~~~~---~G~~-~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~  361 (472)
                      +|+...+   ..+. +.++.+.++++.+++.|+.+++.||++|+|||||.+|++|+|+| |+++|+++++++.+++++..
T Consensus       282 sp~~~~~~~~g~~~~~~ii~~~il~a~~~~~n~~~~~~sR~l~a~Ardg~lP~~~~kv~-~~~~P~~All~~~~~~~l~~  360 (489)
T PRK10836        282 SPFTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAPRIFAKLS-RGGVPRNALYATTVIAGLCF  360 (489)
T ss_pred             CcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHH
Confidence            3433332   1122 34567778889999999999999999999999999999999999 67999999999998888776


Q ss_pred             hhh------hHHHHHHHHHHHHHHHHHHHHhHHHhhhhc----CCCCC-CCcccch--hHHHHHHHHHHHHHhhccccc-
Q psy7925         362 MSS------NIFALINYVGFATWLSIGVGVLCLPVLRYT----QPDLP-RPIKVHL--IFPAAYLIASVFVTLVPMMAS-  427 (472)
Q Consensus       362 l~~------~~~~l~~l~~~~~l~~yil~~~a~~~l~~~----~~~~~-~~~~~~~--~~~il~iv~~l~li~~~~~~~-  427 (472)
                      +..      .++.+.++.++...+.|++..++.+++||+    +|+.+ ||||.|.  +.+.++++.|+++++...+.. 
T Consensus       361 l~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~l~~R~~~~~~~~~~~~~p~~~p~~p~~~~~~~~~~~~~~~~~~~~~~  440 (489)
T PRK10836        361 LTSMFGNQTVYLWLLNTSGMTGFIAWLGIAISHYRFRRGYVLQGHDLNDLPYRSGFFPLGPIFAFVLCLIITLGQNYEAF  440 (489)
T ss_pred             HHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCccHHHHHHHHHHHHHHHHHHHHhh
Confidence            532      245677888889999999999999998885    45654 7999998  788888888888766533322 


Q ss_pred             --chhHHHHHHHHHHHHHHHH
Q psy7925         428 --PVETGIGCLMIATSVPVYM  446 (472)
Q Consensus       428 --~~~~~i~~~v~~lgl~iy~  446 (472)
                        +...+..+...++|+++|.
T Consensus       441 ~~~~~~~~~~~~~~~g~~~~~  461 (489)
T PRK10836        441 LKDTIDWGGVAATYIGIPLFL  461 (489)
T ss_pred             cCCCccHHHHHHHHHHHHHHH
Confidence              1113444455555555554

>KOG1286|consensus

Probab=99.14  E-value=1.7e-10  Score=125.70  Aligned_cols=170  Identities=16%  Similarity=0.220  Sum_probs=149.9

Q ss_pred             hhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhh--hhcch---
Q psy7925         211 IFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAE--VLNSE---  285 (472)
Q Consensus       211 ~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~--l~~~~---  285 (472)
                      +....+|.|+|.....+||.++|||+||+++..             ++..+..+|..++...-..+|.+|  +.+++   
T Consensus       239 ~~~~fsf~G~e~va~~a~E~kNP~k~IP~ai~~-------------s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~  305 (554)
T KOG1286|consen  239 ATAFFSFIGFELVATTAEEAKNPRKAIPKAIKQ-------------SLLRILLFYILSSIVLGLLVPYNDPRLDPGAALA  305 (554)
T ss_pred             HHHHHHHhhHHHHHHHHHhccCCcccccHHHHH-------------HHHHHHHHHHHHHHHheEEeccCccccCCCCccc
Confidence            345678899999999999999999999999988             999999999999999999999988  66554   


Q ss_pred             HHHH-HHHhccchh---HHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHH
Q psy7925         286 ATFA-NRIFGPIAW---TLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYL  361 (472)
Q Consensus       286 ~~l~-~~~~G~~~~---ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~  361 (472)
                      +++. ..-......   ++.++++++..++.|+.++.++|.+|+|||||++||+|+++|+| |+|+.+++...+.+.+..
T Consensus       306 spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~  384 (554)
T KOG1286|consen  306 SPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRR-GVPLVAVLVSGLFGALAA  384 (554)
T ss_pred             cHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCC-CCchhHHHHHHHHHHHHH
Confidence            2444 222333334   78999999999999999999999999999999999999999977 999999999999999988


Q ss_pred             hhhh------HHHHHHHHHHHHHHHHHHHHhHHHhhhhc
Q psy7925         362 MSSN------IFALINYVGFATWLSIGVGVLCLPVLRYT  394 (472)
Q Consensus       362 l~~~------~~~l~~l~~~~~l~~yil~~~a~~~l~~~  394 (472)
                      +..+      ++++.++.+++.++.|.+...+.+++|+.
T Consensus       385 ~~~~~~~~~~f~~L~~~~si~tl~~w~~i~~~~i~~R~a  423 (554)
T KOG1286|consen  385 LNFSLGAATVFNWLVNLSSIGTLFAWTLVALSHLRFRYA  423 (554)
T ss_pred             HHhccccchHHHHHHHHHhHHHHHHHHHHHHHHeeeeec
Confidence            8543      59999999999999999999999999875

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=99.10  E-value=1.6e-08  Score=105.67  Aligned_cols=103  Identities=16%  Similarity=0.310  Sum_probs=85.3

Q ss_pred             hHHHHHHHHHHHhhc-------chhhhhhhhh-hhcCcccchhhHHHHHH-HHHHHHHHHHHHHHHhccChhhhh---cc
Q psy7925          31 TSIALSFYSGLFAYN-------GWNYLNFIIE-ELKDPIVNLPRAIYISC-TLVTVVYVLTNVAFYTTLSPAEVL---NS   98 (472)
Q Consensus        31 ~~~~~~~~~~~~a~~-------G~~~~~~~~~-E~k~p~~~~p~a~~~~~-~~~~~~y~~~~~~~~~~~~~~~~~---~~   98 (472)
                      ..+..|+.-+.+.++       ||-.++.+.+ |.|||+|+.|+.+..++ ..+...|+..+.++....+.++..   ++
T Consensus       174 ~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~  253 (378)
T TIGR00796       174 QAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNG  253 (378)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCc
Confidence            468899999999999       9999999988 99999999999999998 778888999999999988766443   35


Q ss_pred             hhHHHHHHHHhccchh-hHHHHHHHHHHHHHHHHHH
Q psy7925          99 EAVAVTFANRIFGPIA-WTLPVFVALSTFGGVNGII  133 (472)
Q Consensus        99 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  133 (472)
                      +.......++.+|+.+ ..+.+.+.++++++.++.+
T Consensus       254 ~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli  289 (378)
T TIGR00796       254 AQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLT  289 (378)
T ss_pred             HHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            6778888999999975 5566677777777766643

transmembrane helical spanners.

>TIGR00837 araaP aromatic amino acid transport protein

Probab=98.97  E-value=5.2e-08  Score=101.16  Aligned_cols=109  Identities=17%  Similarity=0.221  Sum_probs=78.3

Q ss_pred             CChhHHHHHHHHHHHhhcchh-hhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcch------h
Q psy7925          28 TDVTSIALSFYSGLFAYNGWN-YLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSE------A  100 (472)
Q Consensus        28 ~~~~~~~~~~~~~~~a~~G~~-~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~------~  100 (472)
                      .++.++..++...+++| |+| .+..+.+|.||++|++||++..+..+++++|++.+......+|++++.+..      .
T Consensus       175 ~~~~~~~~a~~~~~~~f-g~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~  253 (381)
T TIGR00837       175 SYWPYILSALPVCLTSF-GFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLD  253 (381)
T ss_pred             ccHHHHHHHHHHHHHHH-HcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChH
Confidence            35677888888888888 665 688889999877999999999999999999999999999999999886321      2


Q ss_pred             HHHHHHHHhccc--hhhHHHHHHHHHHHHHHHHHHHHHH
Q psy7925         101 VAVTFANRIFGP--IAWTLPVFVALSTFGGVNGIILTTS  137 (472)
Q Consensus       101 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s  137 (472)
                      +.....++..+.  ....+.++..+++.++.++..++.+
T Consensus       254 ~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~  292 (381)
T TIGR00837       254 GLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLF  292 (381)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222233333332  2345555556666666666555543

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>TIGR00908 2A0305 ethanolamine permease

Probab=98.62  E-value=2e-06  Score=91.14  Aligned_cols=130  Identities=17%  Similarity=0.092  Sum_probs=80.0

Q ss_pred             HHHHHHHhhcchhhhhhhhhhh-cCcccchhhHHHHHHHHHHHHHHHHHHH--HHhcc-ChhhhhcchhHHHHHHHHhcc
Q psy7925          36 SFYSGLFAYNGWNYLNFIIEEL-KDPIVNLPRAIYISCTLVTVVYVLTNVA--FYTTL-SPAEVLNSEAVAVTFANRIFG  111 (472)
Q Consensus        36 ~~~~~~~a~~G~~~~~~~~~E~-k~p~~~~p~a~~~~~~~~~~~y~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~  111 (472)
                      .....+.-+.+.-..+.=.++- ||-.|.+-.++....++....-+ ....  -...+ ..++  .-......... ..+
T Consensus       199 ~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s~~~~~~~~~~~~~-~~~g~~~~~~l~~~~~--p~~~~~~~~~g-~~~  274 (442)
T TIGR00908       199 FAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAILTLLALAAGILV-VGPGAADAKELMGSNN--PLPEALESIYG-GST  274 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHH-HHhcCCCHHHhCCCcc--hHHHHHHHHhC-Cch
Confidence            3455555565555555445554 77777888887765443332222 2211  11111 1111  11111111111 122


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHh
Q psy7925         112 PIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTI  170 (472)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~  170 (472)
                      .....+.+..+++.+++.|+.++..||.+|++||||++|++|+|+| +++||++|+++.
T Consensus       275 ~~~~~i~~~~~~~~~~s~~~~~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~Ail~~  332 (442)
T TIGR00908       275 WMSQFVNLVGLFGLIASFHGIIYGYSRQIFALSRAGYLPESLSKVN-RKKAPVLAIVVP  332 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHhC-CCCCcHHHHHHH
Confidence            3344556677888999999999999999999999999999999999 899999888753

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=98.61  E-value=3.9e-07  Score=97.74  Aligned_cols=54  Identities=11%  Similarity=-0.031  Sum_probs=42.4

Q ss_pred             hhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccC
Q psy7925         211 IFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLS  277 (472)
Q Consensus       211 ~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp  277 (472)
                      +...|+|.|+|..+..+||.|+|+|++||++..             +++++.+.|.......+...|
T Consensus       220 ~~~~~~f~G~e~~~~~aeE~knP~r~iPrai~~-------------s~~i~~~~~~~~~~~~~~~~~  273 (475)
T TIGR03428       220 LMAAYVMVGFGSAGELSEETKNPRRVAPRTILT-------------ALSVSALGGGLMILGALMAAP  273 (475)
T ss_pred             HHHHHHhcCcchHHHHHHHhcCcchhhhHHHHH-------------HHHHHHHHHHHHHHHHHHHCC
Confidence            345689999999999999999999999999988             666666666665555555444

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=98.54  E-value=1.4e-07  Score=99.47  Aligned_cols=180  Identities=17%  Similarity=0.196  Sum_probs=151.6

Q ss_pred             hhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHHHHH
Q psy7925         213 ALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFANRI  292 (472)
Q Consensus       213 ~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~~~~  292 (472)
                      ...+|.|.|-....+.|+++|+|++||++--             -..=..++|+..-...+...|-+|+..+.+|+.+.+
T Consensus       212 v~Faf~GiElvGitA~Et~dP~k~ipkAin~-------------V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f  278 (462)
T COG1113         212 VMFAFGGIELVGITAAEAKDPEKAIPKAINS-------------VIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVF  278 (462)
T ss_pred             HHHHHhhHHHHHHHHHhhcChhhHHHHHHhh-------------hhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHH
Confidence            4567888999999999999999999999766             556677889999889999999999999998887777


Q ss_pred             h--c-cc-hhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHhh-----
Q psy7925         293 F--G-PI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMS-----  363 (472)
Q Consensus       293 ~--G-~~-~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l~-----  363 (472)
                      -  | +. +-++.+.++.+.+++.|+-+|+.+|++|++++||..||.++|++ |++.|.+++.++.+...+..+.     
T Consensus       279 ~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~APk~~~kls-k~gVP~~ai~~s~~~~~~~V~Lny~~P  357 (462)
T COG1113         279 SLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPKAFAKLS-KRGVPVNAILLSAVVLLLGVVLNYILP  357 (462)
T ss_pred             HHcCCcccccceeEEEeechhhcccccccccchHHHHHhhcCcccHhHhhcc-ccCCCHHHHHHHHHHHHHHHHHHhhcc
Confidence            2  2 22 34678889999999999999999999999999999999999999 8999999999887777666653     


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCC--CCCcccch
Q psy7925         364 -SNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDL--PRPIKVHL  406 (472)
Q Consensus       364 -~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~--~~~~~~~~  406 (472)
                       ..++.+.+..+...+..|.+..++..++||++++.  +.+||.|.
T Consensus       358 ~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk~~~~~~~~~~fkm~~  403 (462)
T COG1113         358 EKVFELVTSSSGLGLLFVWLMILLSQLKLRKAKPAEGKKLKFKMPL  403 (462)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccCccccccc
Confidence             35667779999999999999999999999865543  34577775

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=98.52  E-value=9.1e-08  Score=102.66  Aligned_cols=112  Identities=17%  Similarity=0.212  Sum_probs=90.6

Q ss_pred             chhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhh--hhc----
Q psy7925         210 NIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAE--VLN----  283 (472)
Q Consensus       210 ~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~--l~~----  283 (472)
                      ++-+-.+|.|-|.....+-|+++|+|++|+++-=             .+.=+.++|++.....-..+|.+|  |.+    
T Consensus       240 ~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAik~-------------vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~  306 (541)
T COG0833         240 FVIAAFSFSGTELVGLAAGESENPRKSIPKAIKQ-------------VFWRILLFYILSIFVIGLLVPYNDPRLLGNSSS  306 (541)
T ss_pred             HhhheeeeeceeeeeeeecccCCchhhhHHHHHH-------------HHHHHHHHHHHHHHHheEEccCCCcccccCCcC
Confidence            3445567888999999999999999999999877             677888999999999989999976  321    


Q ss_pred             --chHHHHHHH--hccc--hhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCCh
Q psy7925         284 --SEATFANRI--FGPI--AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPE  334 (472)
Q Consensus       284 --~~~~l~~~~--~G~~--~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~  334 (472)
                        .++|+.-.+  .|.-  +-++..+++++.+++.|+.+|.+||.+|+||+||+.||
T Consensus       307 ~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA~~g~APk  363 (541)
T COG0833         307 GVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRMLYSLAKQGKAPK  363 (541)
T ss_pred             CccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCCCch
Confidence              223444333  2322  35789999999999999999999999999999999996

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=98.45  E-value=1.6e-05  Score=86.36  Aligned_cols=140  Identities=19%  Similarity=0.239  Sum_probs=113.9

Q ss_pred             HHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHH---HHH
Q psy7925          32 SIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTF---ANR  108 (472)
Q Consensus        32 ~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  108 (472)
                      +.+..+...+|+|.|+|.+++++||+|||+||+|||+..+.+++.++|.+.+++....+|++|+..++.+...+   .+.
T Consensus       195 ~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~  274 (507)
T TIGR00910       195 GTLVVFVAFIGAYMGVEASASHINELENPGRDYPLAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILH  274 (507)
T ss_pred             cHHHHHHHHHHHHhcHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHh
Confidence            34456667799999999999999999999999999999999999999999888887788888876555443332   222


Q ss_pred             hcc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhh
Q psy7925         109 IFG---PIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVT  172 (472)
Q Consensus       109 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~  172 (472)
                      ..+   +....+.+.++++.++++++.++..||.+++++|||++|+.|+|+| +++||++++++...
T Consensus       275 ~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~~sR~l~~~ardg~lP~~~~k~n-k~~~P~~a~~~~~~  340 (507)
T TIGR00910       275 FAHEIEWLVKVIAALIAFGVLAEIASWIVGPSRGMFAAAQKGLLPAAFAKMN-KHEVPVPLVIIQGI  340 (507)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcCHHHHhhC-cCCCcHHHHHHHHH
Confidence            222   2234567778899999999999999999999999999999999998 67999888775444

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>TIGR00909 2A0306 amino acid transporter

Probab=98.44  E-value=6.4e-06  Score=86.76  Aligned_cols=143  Identities=16%  Similarity=0.164  Sum_probs=85.7

Q ss_pred             CCCCChhHHHHHHHHHHHhhcchhhhhhhhhh-hcCcccchhhHHHHHHHHHHHHHHHHHHHH-Hhcc-ChhhhhcchhH
Q psy7925          25 NSTTDVTSIALSFYSGLFAYNGWNYLNFIIEE-LKDPIVNLPRAIYISCTLVTVVYVLTNVAF-YTTL-SPAEVLNSEAV  101 (472)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~a~~G~~~~~~~~~E-~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~-~~~~-~~~~~~~~~~~  101 (472)
                      ....++..-.......+.-+...-..+.-.++ -||..|.+..++....+.-........... ...+ ..++..  ...
T Consensus       192 ~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~--~~~  269 (429)
T TIGR00909       192 MGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPL--SLV  269 (429)
T ss_pred             CcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHH--HHH
Confidence            33444333222333444444444344444444 588788999988776555443333222211 1111 111111  111


Q ss_pred             HHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhh
Q psy7925         102 AVTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVT  172 (472)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~  172 (472)
                      ......+..+..   +.+.++++.+++.++.++..||.+++++|||++|++|+|+||+++||++++++...
T Consensus       270 ~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~  337 (429)
T TIGR00909       270 GYDLGQGIGGLI---LTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGSLSKVHPKTGTPHMSIIIFSL  337 (429)
T ss_pred             HHHhCchHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCCCCCcHHHHHHHHH
Confidence            111222323333   34567889999999999999999999999999999999999999999988775433

>TIGR00911 2A0308 L-type amino acid transporter

Probab=98.42  E-value=1.1e-05  Score=87.20  Aligned_cols=48  Identities=48%  Similarity=0.968  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHH
Q psy7925         122 ALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLT  169 (472)
Q Consensus       122 ~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~  169 (472)
                      +++.+++.|+.++..||+++++||||.+|+.|+++|++++||++++++
T Consensus       326 ~is~~~~~~~~~~~~sR~l~a~ardg~lP~~~~~v~~~~~~P~~all~  373 (501)
T TIGR00911       326 GLSCFGSVNGSLFSSSRLFFVGGREGHLPSLLSMIHVKRLTPLPSLLI  373 (501)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHhcCCCCCCHHHHHH
Confidence            457899999999999999999999999999999999999999887764

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=98.40  E-value=1.8e-06  Score=91.73  Aligned_cols=53  Identities=15%  Similarity=0.201  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhh
Q psy7925         120 FVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVT  172 (472)
Q Consensus       120 ~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~  172 (472)
                      .+.++.+++.|+.++..||++|+++|||++|++|+|+||+++||++++++...
T Consensus       287 ~~~~~~~~~~~~~~~~~sR~~~a~ardg~lp~~~~~v~~~~~tP~~a~l~~~~  339 (445)
T PRK11357        287 TAMIVILGSLSSCVMYQPRLEYAMAKDNLFFKCFGHVHPKYNTPDVSIILQGA  339 (445)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHhcCCchHHHHHhCCCCCCCHHHHHHHHH
Confidence            45677889999999999999999999999999999999999999988775433

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=98.20  E-value=1.7e-05  Score=85.15  Aligned_cols=142  Identities=18%  Similarity=0.269  Sum_probs=111.6

Q ss_pred             hHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhcc-Chhhhhcch--hHHHHHHH
Q psy7925          31 TSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTL-SPAEVLNSE--AVAVTFAN  107 (472)
Q Consensus        31 ~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~  107 (472)
                      .++..++..+.|+|.|+|.+++++||+|||+||+|||+..++.++.++|++......... +.+++.+++  .+......
T Consensus       217 ~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~  296 (482)
T TIGR00907       217 FAFLLGLLNPAWSMTGYDGTAHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFY  296 (482)
T ss_pred             hhhhhhhhhhHHHhcCcchhhHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHH
Confidence            367778888999999999999999999999999999999998887766554444443333 445554432  24444444


Q ss_pred             Hhccc-h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--hhhhhccCCCCCchhHHHHhhh
Q psy7925         108 RIFGP-I-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMP--EILTMIQVTKMTPTPAVLTIVT  172 (472)
Q Consensus       108 ~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p--~~~~~~~~~~~tP~~~~~~~~~  172 (472)
                      +.+|. . ...+.+.++++.+++.++.++..||.++++||||.+|  ++|+|+||+++||++++++...
T Consensus       297 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~  365 (482)
T TIGR00907       297 NALGNKAGAIFLLCLILVTSFFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAV  365 (482)
T ss_pred             HHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHH
Confidence            44454 3 3456778889999999999999999999999999999  9999999999999988875443

>TIGR00930 2a30 K-Cl cotransporter

Probab=98.10  E-value=0.00035  Score=81.38  Aligned_cols=140  Identities=17%  Similarity=0.131  Sum_probs=112.8

Q ss_pred             hHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHH--------
Q psy7925          31 TSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVA--------  102 (472)
Q Consensus        31 ~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~--------  102 (472)
                      .++...+...+++|.|+|..++++||+|||+|++|||++.++.+++++|++.++++....+.+.....+...        
T Consensus       280 ~~f~~~~ai~F~A~tGi~agan~sgElKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~  359 (953)
T TIGR00930       280 GGFFSLFGIFFPSVTGILAGANISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAA  359 (953)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccch
Confidence            347767777788999999999999999999999999999999999999999998777777654432211100        


Q ss_pred             ---------------H--HHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--hhhhhccCCCCCc
Q psy7925         103 ---------------V--TFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMP--EILTMIQVTKMTP  163 (472)
Q Consensus       103 ---------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p--~~~~~~~~~~~tP  163 (472)
                                     .  ...... ...+.++.+.++++++++.++.++..||+++++||||++|  ++|+++|++++||
T Consensus       360 ~f~~~~~~p~~~gL~~~~~~~~~~-~~~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP  438 (953)
T TIGR00930       360 CFSECAHNTCSYGLMNNLQVMSLV-SPFPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEP  438 (953)
T ss_pred             hhhhhcccchhhhhcchHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCc
Confidence                           0  011111 2235678888999999999999999999999999999999  8999999999999


Q ss_pred             hhHHHHhh
Q psy7925         164 TPAVLTIV  171 (472)
Q Consensus       164 ~~~~~~~~  171 (472)
                      ++|+++..
T Consensus       439 ~~Alllt~  446 (953)
T TIGR00930       439 LRAYLLTA  446 (953)
T ss_pred             HHHHHHHH
Confidence            98877533

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=97.95  E-value=0.0002  Score=75.50  Aligned_cols=144  Identities=17%  Similarity=0.194  Sum_probs=89.1

Q ss_pred             CCCCChhHHHHHHHHHHHhhcchhhhhhhhhh-hcCcccchhhHHHHHHHHHHHHHHHHHHHHHhc--cCh-hhhhcchh
Q psy7925          25 NSTTDVTSIALSFYSGLFAYNGWNYLNFIIEE-LKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTT--LSP-AEVLNSEA  100 (472)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~a~~G~~~~~~~~~E-~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~--~~~-~~~~~~~~  100 (472)
                      +...............+.-|.+.-..+.=.++ -||-.|.+..++.... .+.+.+..........  ... +...+...
T Consensus       198 ~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~~~~~~~-~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~  276 (466)
T COG0531         198 GSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVL-ILYILGALVIVGVLPAGDLAASAPSAPLAL  276 (466)
T ss_pred             chHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHHHHHHHHH-HHHHHHHHHHHhCccHHHHhccCCCccHHH
Confidence            45556555555666667777766666655555 5775577787774443 3333333333322221  110 00011111


Q ss_pred             HHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhh
Q psy7925         101 VAVTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVT  172 (472)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~  172 (472)
                      .......+....   .+.+...++.+++.++..+..+|.+++++|||.+|+.++|+|++.+||+++.+....
T Consensus       277 ~~~~~~g~~~~~---~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~~~~~~~~~~~~P~~a~~~~~i  345 (466)
T COG0531         277 AALFGGGNWGAI---IIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPKFFAKVNPKGRTPVIALILTGI  345 (466)
T ss_pred             HHHHcCccHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHhCCCCCCCHHHHHHHHH
Confidence            111111122222   345567889999999999999999999999999999999999999999988885444

>KOG2083|consensus

Probab=97.83  E-value=3.3e-05  Score=83.66  Aligned_cols=139  Identities=6%  Similarity=0.019  Sum_probs=105.8

Q ss_pred             HHHHHHhhhchhhhhhhhhHHHHHhhhcCCCCh--hhhcccCCCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy7925         302 VFVALSTFGGVNGIILTTSRLFYAGACEGQMPE--ILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWL  379 (472)
Q Consensus       302 i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~--~f~kv~~k~~tP~~al~~~~~i~~ii~l~~~~~~l~~l~~~~~l~  379 (472)
                      .+...+..++..+.+.++.++++++.+|...|.  ++.|-.+|.+-|.++..++...+...+..+..+.+..+.+...+.
T Consensus       321 AGi~~a~LSsalsslVsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igeln~iapiis~FfL~  400 (643)
T KOG2083|consen  321 AGILAAELSSALSSLVSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGELNIIAPIISNFFLL  400 (643)
T ss_pred             hHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEecccceeccchhhhhhh
Confidence            455666777778888899999999999999995  678888899999999999999999999888889999999999999


Q ss_pred             HHHHHHhHHHhhhhcCCC-CCCCcccch-hHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHH
Q psy7925         380 SIGVGVLCLPVLRYTQPD-LPRPIKVHL-IFPAAYLIASVFVTLVPMMASPVETGIGCLMIATSVPVYM  446 (472)
Q Consensus       380 ~yil~~~a~~~l~~~~~~-~~~~~~~~~-~~~il~iv~~l~li~~~~~~~~~~~~i~~~v~~lgl~iy~  446 (472)
                      .|.+.+.+.+..+...++ ++++++... |..+.+.+.|+.+.+      ...+|..++-......+|.
T Consensus       401 syAlinf~~f~aSl~~s~~wRp~f~~yn~wVSllGalKOG~ImF------li~w~aaLi~~~~~~~Ly~  463 (643)
T KOG2083|consen  401 SYALINFSCFHASLAISEGWRPSFKFYNAWVSLLGALLCLAIMF------LISWWAALITFSVLSALYL  463 (643)
T ss_pred             hhhccchhhhhhhhccccccCchhhhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHh
Confidence            999998888876655443 444555554 888888888877632      2344555554434444444

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=97.64  E-value=0.0017  Score=70.32  Aligned_cols=140  Identities=16%  Similarity=0.261  Sum_probs=112.5

Q ss_pred             hHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchh------HHH-
Q psy7925          31 TSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEA------VAV-  103 (472)
Q Consensus        31 ~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~------~~~-  103 (472)
                      .+++.++..+.|+|.|+|.+++++||+|||+||+|||+..+..++.++|++..+......|+++...++.      +.. 
T Consensus       211 ~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (496)
T PRK15238        211 IAVLSFVVFAIFAYGGIEAVGGLVDKTENPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYVL  290 (496)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHHH
Confidence            4677788899999999999999999999999999999999999999999999888777777777654321      100 


Q ss_pred             --HHH-------------HHhccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHH
Q psy7925         104 --TFA-------------NRIFGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAV  167 (472)
Q Consensus       104 --~~~-------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~  167 (472)
                        ...             ...++.+ ...+++..+++.+++.++.++..+|.++++++||++|++|+|+| +++||++++
T Consensus       291 ~~~~g~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~n-k~g~P~~a~  369 (496)
T PRK15238        291 MNNLGYTLGHALGLSPAASLTLGVWFARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLN-KNGMPANAM  369 (496)
T ss_pred             HHHHHHHHHHHhccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhC-cCCCcHHHH
Confidence              000             0111222 23556778999999999999999999999999999999999999 789988887


Q ss_pred             HHhh
Q psy7925         168 LTIV  171 (472)
Q Consensus       168 ~~~~  171 (472)
                      ++..
T Consensus       370 ~~~~  373 (496)
T PRK15238        370 WLQC  373 (496)
T ss_pred             HHHH
Confidence            7533

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=97.59  E-value=0.00063  Score=70.11  Aligned_cols=114  Identities=11%  Similarity=0.112  Sum_probs=83.6

Q ss_pred             CCChhHHHHHHH-HHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHH
Q psy7925          27 TTDVTSIALSFY-SGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTF  105 (472)
Q Consensus        27 ~~~~~~~~~~~~-~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (472)
                      ++++..+..+.. ...|+|.|+|......+|.|||| +.||+...+..+++++|++..+.....+++++..+.+.|....
T Consensus       174 ~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~-~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~  252 (359)
T TIGR00912       174 ENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKK-KIKKSIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLEL  252 (359)
T ss_pred             ccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChh-hhHHHHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHH
Confidence            345667777776 78899999999999999999975 6899999999999999999999999999999998877766555


Q ss_pred             HHHhccc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7925         106 ANRIFGP-----IAWTLPVFVALSTFGGVNGIILTTSRLFY  141 (472)
Q Consensus       106 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~sr~~~  141 (472)
                      .+..-.+     ....+...-..+.+.......+..++.+-
T Consensus       253 ~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~  293 (359)
T TIGR00912       253 IKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLS  293 (359)
T ss_pred             HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4443222     11222223345555555556666555553

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=97.32  E-value=6.4e-05  Score=80.62  Aligned_cols=64  Identities=23%  Similarity=0.285  Sum_probs=57.6

Q ss_pred             cchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcch
Q psy7925         209 SNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSE  285 (472)
Q Consensus       209 ~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~  285 (472)
                      +.....++|.|+|+....+||.|+|+|++||++..             +++.+.++|+..+++....+|.++....+
T Consensus       205 ~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~~-------------~~~~~~v~y~~~~~~~~~~~~~~~~~~~~  268 (478)
T PF00324_consen  205 ALVFAFFAFVGFESIAILAEEAKNPRKTIPRATLL-------------SVLRIGVFYVLTSYALTLAVPYDNLGLTA  268 (478)
T ss_pred             hhhhhhcccccccccccccccCCCchhhhhhHhhh-------------hhhhhhhhhhhhhhhcccccCccchhhcc
Confidence            45667789999999999999999999999999999             88999999999999999999998865443

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>KOG1289|consensus

Probab=96.99  E-value=0.00086  Score=72.58  Aligned_cols=67  Identities=12%  Similarity=0.033  Sum_probs=45.0

Q ss_pred             hhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccC--hhhhhcch--HHH
Q psy7925         213 ALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLS--PAEVLNSE--ATF  288 (472)
Q Consensus       213 ~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp--~~~l~~~~--~~l  288 (472)
                      ..|.+.||.+..-.+||.++++|+.||+++-             ++.+..++=-...+..+..+|  .|.+.++.  +|+
T Consensus       261 ~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~-------------s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~  327 (550)
T KOG1289|consen  261 PAWTMSGYDAAAHMAEETKNASKAAPRGIIS-------------SIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPI  327 (550)
T ss_pred             ceeEEeccCchHHHHHHhcchhhhccHHHHH-------------HHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChH
Confidence            6789999999999999999999999999887             333333332333334444444  34455544  566


Q ss_pred             HHHH
Q psy7925         289 ANRI  292 (472)
Q Consensus       289 ~~~~  292 (472)
                      ++..
T Consensus       328 ~~i~  331 (550)
T KOG1289|consen  328 VQIY  331 (550)
T ss_pred             HHHH
Confidence            6665

>TIGR00814 stp serine transporter

Probab=96.86  E-value=0.021  Score=60.55  Aligned_cols=118  Identities=15%  Similarity=0.157  Sum_probs=87.1

Q ss_pred             CChhHHHHHHHHHHHhhcchhhhhhhh----hhhcCc---ccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcch-
Q psy7925          28 TDVTSIALSFYSGLFAYNGWNYLNFII----EELKDP---IVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSE-   99 (472)
Q Consensus        28 ~~~~~~~~~~~~~~~a~~G~~~~~~~~----~E~k~p---~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~-   99 (472)
                      +.+..++.++...+|+|.|+|.+..++    ||-|||   +|..-|++..+..+..++|++-..+....+++++..... 
T Consensus       183 ~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~  262 (397)
T TIGR00814       183 GFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKE  262 (397)
T ss_pred             chHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence            356789999999999999999999998    777765   577789999999999999999999999999988865321 


Q ss_pred             ---hHHHHHHHHhccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7925         100 ---AVAVTFANRIFGP-IAWTLPVFVALSTFGGVNGIILTTSRLFYAGAC  145 (472)
Q Consensus       100 ---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~  145 (472)
                         +.....+++.-.+ +....+++..++...+..+..++....+..+-+
T Consensus       263 ~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~  312 (397)
T TIGR00814       263 QNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVL  312 (397)
T ss_pred             cCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence               2222233333333 355666666777777777777766666655553

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=96.83  E-value=0.36  Score=51.14  Aligned_cols=116  Identities=16%  Similarity=0.205  Sum_probs=84.1

Q ss_pred             CCCCChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhc---ch--
Q psy7925          25 NSTTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLN---SE--   99 (472)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~---~~--   99 (472)
                      +...++...+..+...+++|.-.+.+..+.+..++-+|.+.|++..+..+..+.|++-..+....+|.++..+   ++  
T Consensus       178 ~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~  257 (394)
T PF03222_consen  178 PSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGN  257 (394)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCC
Confidence            3456788999999999999999999999999999777889999999999999999999988888898876542   11  


Q ss_pred             -hHHHHHHHHhcc-ch-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7925         100 -AVAVTFANRIFG-PI-AWTLPVFVALSTFGGVNGIILTTSRLF  140 (472)
Q Consensus       100 -~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~sr~~  140 (472)
                       .......++..+ +. .....++..++..++..+..+...+.+
T Consensus       258 ~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l  301 (394)
T PF03222_consen  258 VSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFL  301 (394)
T ss_pred             hHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             122223233222 22 344566666666666666555544443

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=96.40  E-value=1.4  Score=45.44  Aligned_cols=101  Identities=7%  Similarity=-0.009  Sum_probs=73.1

Q ss_pred             hhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHHHH
Q psy7925         212 FALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFANR  291 (472)
Q Consensus       212 ~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~~~  291 (472)
                      ...++|.|++......|+.|++ |+.||+...             +.+.++++|.....+.++++|.+|.++...|..+.
T Consensus       187 ~~~~~f~g~~i~~~~~~~~~~~-~~~~k~~~~-------------~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~  252 (359)
T TIGR00912       187 VVTFAFGEIEIFFLLFPLLSKK-KKIKKSIIK-------------AIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLEL  252 (359)
T ss_pred             HhhhhhHHHHHHHHHHHHhCCh-hhhHHHHHH-------------HHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHH
Confidence            3567888999999998888884 568999888             88999999999999999999999998876654444


Q ss_pred             H---hcc-c-hh--H-HHHHHHHHhhhchhhhhhhhhHHHHHh
Q psy7925         292 I---FGP-I-AW--T-LPVFVALSTFGGVNGIILTTSRLFYAG  326 (472)
Q Consensus       292 ~---~G~-~-~~--i-i~i~~l~s~~~~~~~~~~~~SRvl~a~  326 (472)
                      .   ..+ . .+  . ....-..+.+.......+..++.+..+
T Consensus       253 ~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~  295 (359)
T TIGR00912       253 IKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKL  295 (359)
T ss_pred             HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3   222 1 22  2 223334466666666777777765544

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>PHA02764 hypothetical protein; Provisional

Probab=95.79  E-value=0.033  Score=57.02  Aligned_cols=180  Identities=13%  Similarity=0.163  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHHHHhcc
Q psy7925          32 SIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFANRIFG  111 (472)
Q Consensus        32 ~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (472)
                      .++.++..-+-+|.=.|...+.++|.||.+|....+-..|...+.++-+..+        +..      .-..++-    
T Consensus       182 t~~~a~~~~l~~~~fi~a~~y~~~ei~n~~k~~~~gyf~s~~~~~~~~ii~s--------y~n------~~il~~~----  243 (399)
T PHA02764        182 TLLSALLFDLSAFIFINAISYIAGEIKNIKKSSMIGYFVSYGIVAILSIIDS--------YSN------LNILFAL----  243 (399)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHhhcchhhhhhhhHHHHHHHHHHHHHHh--------hhh------HHHHHHH----
Confidence            4444555556666677888999999999999988888888776665544332        111      1111110    


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHhHhhhccCCC
Q psy7925         112 PIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQVTKMTP  191 (472)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (472)
                               ..+=.+|-+....=.+||++++|+-|+.+||.|+|.+|+-  |. -..+...++-...|.++         
T Consensus       244 ---------~~~w~~~y~~~~~~~~srli~~~~fd~~lpe~f~k~~~nv--~~-l~f~~~~~~~~~en~l~---------  302 (399)
T PHA02764        244 ---------MPIWFFSYMPIANKIQSRLIQTMSFDKVLPEKFSKINPNV--LL-LIFIAETIANVLENLLG---------  302 (399)
T ss_pred             ---------HHHHHHhheeeecchHHHHHHHHHhhhhchHHHhccCCCc--ee-HHHHHHHHHHHHHHHhC---------
Confidence                     0001112222233458999999999999999999999763  33 11221221111112211         


Q ss_pred             chhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHH
Q psy7925         192 TPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVA  271 (472)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~  271 (472)
                               +++.+.+=|-.+-+|+|+-+.-.  ++.|.|.-.+   .          .+..+-.+..+-..+|...+..
T Consensus       303 ---------~~~sf~ldg~lf~~wn~~~~a~~--~~k~~~~ki~---~----------~~~lt~~~~~if~f~y~~y~~~  358 (399)
T PHA02764        303 ---------FNISFGLDGLLFIFWNFIIVAFA--YLKLMNDKIL---F----------FIVLTSLAIQIFLFFYLGYQNI  358 (399)
T ss_pred             ---------CeeeeeccccHHHHHHHHHHHHH--HHHhcCccEE---E----------ehHHHHHHHHHHHHHHHHHHHH
Confidence                     23445566778888998877654  5555555111   1          1122333667777778777666


Q ss_pred             Hhh
Q psy7925         272 FYT  274 (472)
Q Consensus       272 ~~~  274 (472)
                      .++
T Consensus       359 ~~~  361 (399)
T PHA02764        359 IFY  361 (399)
T ss_pred             HHH
Confidence            543

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=95.72  E-value=3  Score=44.50  Aligned_cols=111  Identities=11%  Similarity=0.149  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhc----ch---hHHHH
Q psy7925          32 SIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLN----SE---AVAVT  104 (472)
Q Consensus        32 ~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~----~~---~~~~~  104 (472)
                      -++.++...+++|+=...+..+....++-+|.+.|++..+..+..+.|++-..+....+|.++...    ..   +....
T Consensus       182 ~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~  261 (403)
T PRK15132        182 LALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQA  261 (403)
T ss_pred             HHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHH
Confidence            478888999999998888899988888777899999999999999999999999999999887532    11   22222


Q ss_pred             HHHHhccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7925         105 FANRIFGP-IAWTLPVFVALSTFGGVNGIILTTSRLFYA  142 (472)
Q Consensus       105 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~  142 (472)
                      ..+..-++ .....+++..++..++..+..+.....+.+
T Consensus       262 l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d  300 (403)
T PRK15132        262 LREVVASPHVELAVHLFADLALATSFLGVALGLFDYLAD  300 (403)
T ss_pred             HHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222122 234556666666666666655554444433

>TIGR00837 araaP aromatic amino acid transport protein

Probab=95.66  E-value=0.12  Score=53.58  Aligned_cols=163  Identities=13%  Similarity=0.078  Sum_probs=98.3

Q ss_pred             cccc-ccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcch------HHHH--
Q psy7925         219 GFAT-WTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSE------ATFA--  289 (472)
Q Consensus       219 g~~~-~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~------~~l~--  289 (472)
                      |++. .....||.++++|++||++.+             +..++.++|+..+.+..+.+|.+|+.+..      +++.  
T Consensus       192 g~~~~i~~~~~~~~~~~k~i~raii~-------------g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~  258 (381)
T TIGR00837       192 GFHGNVPSLYKYYDGNVKKVKKSILI-------------GSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNA  258 (381)
T ss_pred             HcccccHHHHHHhccCHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHH
Confidence            5543 333345555449999999999             89999999999999999999999986422      2322  


Q ss_pred             -HHHhccc--hhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHhhhhH
Q psy7925         290 -NRIFGPI--AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNI  366 (472)
Q Consensus       290 -~~~~G~~--~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l~~~~  366 (472)
                       +...+..  ..++.++..++..++.+++..+.++.         +++.+++.+++++ |..+..+..+..+++......
T Consensus       259 ~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~---------l~~~~~~~~~~~~-~~~~~~~~~~~pl~~a~~~p~  328 (381)
T TIGR00837       259 LQGVLKSSAIELALELFSNFALASSFLGVTLGLFDY---------LADLFKFDDSKKG-RFKTGLLTFLPPLVFALFYPE  328 (381)
T ss_pred             HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhCCCcccCC-CchhhhhhHHhHHHHHHHhhH
Confidence             2222322  24567777788888888888777744         4444555443433 566666666666666654322


Q ss_pred             HHHHHHHHHHHHHHHHHHHh---HHHhhhhcCCCCCCCcccch
Q psy7925         367 FALINYVGFATWLSIGVGVL---CLPVLRYTQPDLPRPIKVHL  406 (472)
Q Consensus       367 ~~l~~l~~~~~l~~yil~~~---a~~~l~~~~~~~~~~~~~~~  406 (472)
                      ..+..+...+....++....   -..+.|||++  +.+||.|.
T Consensus       329 ~~~~~l~~~G~~~~~~~~~~p~l~~~~~r~~~~--~~~~~~~~  369 (381)
T TIGR00837       329 GFLYAIGYAGLAATIWAVIIPALLAWKARKKFP--NAGYRVWG  369 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCccccC
Confidence            22233333333333333332   2233344433  35888887

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=94.72  E-value=3.3  Score=44.18  Aligned_cols=67  Identities=12%  Similarity=0.217  Sum_probs=62.0

Q ss_pred             CCChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccc-hhhHHHHHHHHHHHHHHHHHHHHHhccChh
Q psy7925          27 TTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVN-LPRAIYISCTLVTVVYVLTNVAFYTTLSPA   93 (472)
Q Consensus        27 ~~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~-~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~   93 (472)
                      +..+..++.++...+++|.+..+...+..|.|++.+. ++|++..+..+..++|+......+..++.+
T Consensus       189 ~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~  256 (415)
T COG0814         189 QSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSL  256 (415)
T ss_pred             hhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            3678899999999999999999999999999988777 999999999999999999999999998754

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=93.31  E-value=2.2  Score=43.33  Aligned_cols=116  Identities=12%  Similarity=0.137  Sum_probs=83.7

Q ss_pred             CCCChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHH
Q psy7925          26 STTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTF  105 (472)
Q Consensus        26 ~~~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (472)
                      .++++..+..+.....+.|.|.|....+...+|||+| ..|+...+...+++.|.+..+.....+++++..+...|....
T Consensus       170 ~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~-~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~  248 (320)
T PF03845_consen  170 LESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKK-LKKSLLIAILISGLFLLFIIFITIGVFGPELAKKLTYPVLEL  248 (320)
T ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHH
Confidence            3567888999999999999999999999999999754 689999999999999999999999999998887766554433


Q ss_pred             HHHh-----ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7925         106 ANRI-----FGPIAWTLPVFVALSTFGGVNGIILTTSRLFYA  142 (472)
Q Consensus       106 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~  142 (472)
                      .+..     +..........-..+.+.......+..++.+-.
T Consensus       249 ~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~  290 (320)
T PF03845_consen  249 ARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQ  290 (320)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2221     112222222233445555555556665555543

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>PRK10483 tryptophan permease; Provisional

Probab=93.27  E-value=14  Score=39.71  Aligned_cols=112  Identities=10%  Similarity=0.135  Sum_probs=79.5

Q ss_pred             hhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhc----chh--HHH
Q psy7925          30 VTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLN----SEA--VAV  103 (472)
Q Consensus        30 ~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~----~~~--~~~  103 (472)
                      +..++.++...+++|+=...+..+.+..++-.|.+.|++..+..+..+.|++-..+..+.+|+++..+    .++  ...
T Consensus       191 ~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~  270 (414)
T PRK10483        191 APYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLV  270 (414)
T ss_pred             HHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHH
Confidence            45677889999999988888888888877655699999999999999999999999999999887532    222  222


Q ss_pred             HHHHHhccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7925         104 TFANRIFGP--IAWTLPVFVALSTFGGVNGIILTTSRLFY  141 (472)
Q Consensus       104 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~sr~~~  141 (472)
                      ....+..+.  .....+++..++..++..+..+.....+.
T Consensus       271 ~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~  310 (414)
T PRK10483        271 QALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLA  310 (414)
T ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            233332332  23556666666667776666555544443

>PF13906 AA_permease_C: C-terminus of AA_permease

Probab=92.65  E-value=0.16  Score=38.32  Aligned_cols=47  Identities=21%  Similarity=0.309  Sum_probs=37.1

Q ss_pred             cccch--hHHHHHHHHHHHHHhhcccccchhHHHHHH-HHHHHHHHHHHHHHHh
Q psy7925         402 IKVHL--IFPAAYLIASVFVTLVPMMASPVETGIGCL-MIATSVPVYMVFIAWR  452 (472)
Q Consensus       402 ~~~~~--~~~il~iv~~l~li~~~~~~~~~~~~i~~~-v~~lgl~iy~~~~~~~  452 (472)
                      ||+|+  ++|.+++..+.++    +...+...|+.+. +.++|+++|+.|.+|+
T Consensus         1 F~vP~vP~~P~~si~~ni~L----m~~L~~~twirf~iWl~iGl~iYf~YG~~h   50 (51)
T PF13906_consen    1 FKVPLVPFLPALSILINIYL----MAQLSALTWIRFGIWLAIGLVIYFGYGIRH   50 (51)
T ss_pred             CCCCcccHHHHHHHHHHHHH----HHHhhHhHHHHHHHHHHHHHHHHHheeeec
Confidence            46676  8999999999999    4556777776666 6899999999877654

>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members

Probab=92.34  E-value=3.3  Score=45.66  Aligned_cols=105  Identities=15%  Similarity=0.086  Sum_probs=52.8

Q ss_pred             hHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCCh-hhhcccCCC-CC---chhHHHHHHHHHHH
Q psy7925         285 EATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPE-ILTMIQVTK-MT---PTPAVLTIAFLSLL  359 (472)
Q Consensus       285 ~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~-~f~kv~~k~-~t---P~~al~~~~~i~~i  359 (472)
                      ++|+...++....+-..+.+..++.-+--+.+.++-.+..+.-+-|.+|| ...|.++++ |.   |..--++......+
T Consensus       263 ~npFf~~~P~~~~~p~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~v  342 (534)
T PF02705_consen  263 SNPFFLLIPEWLLWPMVILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAV  342 (534)
T ss_pred             hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhh
Confidence            44666655443322233333333322323334455556666677799997 233444333 33   44433333333333


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHhHHH
Q psy7925         360 YLMSSNIFALINYVGFATWLSIGVGVLCLP  389 (472)
Q Consensus       360 i~l~~~~~~l~~l~~~~~l~~yil~~~a~~  389 (472)
                      ++.+.+-+++.+...+.......++.+-..
T Consensus       343 vl~F~~S~~la~AYGiAVt~tM~iTT~L~~  372 (534)
T PF02705_consen  343 VLGFRSSSNLAAAYGIAVTGTMLITTILLF  372 (534)
T ss_pred             heEECChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444666777777666665555555444443

; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane

>PRK09664 tryptophan permease TnaB; Provisional

Probab=91.91  E-value=20  Score=38.41  Aligned_cols=107  Identities=14%  Similarity=0.125  Sum_probs=72.2

Q ss_pred             hHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhc----chh---HHH
Q psy7925          31 TSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLN----SEA---VAV  103 (472)
Q Consensus        31 ~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~----~~~---~~~  103 (472)
                      ..++.++...+++|+=...+..+..-.++-.|.+.|++..+..+..++|++-..+..+.+|+++...    .++   ...
T Consensus       193 ~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~  272 (415)
T PRK09664        193 PYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVK  272 (415)
T ss_pred             HHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHH
Confidence            3577788888888887788888877777666888999999999999999999999999999877532    111   122


Q ss_pred             HHHHHhccc-hhhHHHHHHHHHHHHHHHHHHHHHH
Q psy7925         104 TFANRIFGP-IAWTLPVFVALSTFGGVNGIILTTS  137 (472)
Q Consensus       104 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s  137 (472)
                      ...++.-+. .....+++..++..++..+..+...
T Consensus       273 s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~  307 (415)
T PRK09664        273 SFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLF  307 (415)
T ss_pred             HHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222222 2345555555566666555444433

>KOG1304|consensus

Probab=91.80  E-value=3.1  Score=44.93  Aligned_cols=63  Identities=21%  Similarity=0.431  Sum_probs=56.7

Q ss_pred             CChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchh---hHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7925          28 TDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLP---RAIYISCTLVTVVYVLTNVAFYTTLS   91 (472)
Q Consensus        28 ~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p---~a~~~~~~~~~~~y~~~~~~~~~~~~   91 (472)
                      +++.++-+.+.++.|||-|.-.+-.+-+|+|+|+ +.|   ..+-.++.+++++|......-|...+
T Consensus       238 ~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~-~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG  303 (449)
T KOG1304|consen  238 TGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQ-KFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFG  303 (449)
T ss_pred             cchhhhHHHHHHHHHHhccceEEEehhhcccChh-hcCCccchHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4588999999999999999999999999999996 557   89999999999999999988888776

>KOG1303|consensus

Probab=91.68  E-value=1  Score=48.58  Aligned_cols=58  Identities=26%  Similarity=0.320  Sum_probs=54.5

Q ss_pred             HHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccCh
Q psy7925          34 ALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSP   92 (472)
Q Consensus        34 ~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~   92 (472)
                      ..++....|+|.|....-++-..+|+|.+ +.|+.+.+..++++.|..+++.-|.+.+.
T Consensus       231 f~a~g~iaFaf~gH~v~peIq~tMk~p~~-f~~~~lis~~~~~~~y~~vai~GY~aFG~  288 (437)
T KOG1303|consen  231 FTALGIIAFAYGGHAVLPEIQHTMKSPPK-FKKALLISYIIVTFLYFPVAIIGYWAFGD  288 (437)
T ss_pred             hhhhhheeeeecCCeeeeehHhhcCCchh-hhhHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence            67899999999999999999999999998 99999999999999999999999988863

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=88.36  E-value=6  Score=41.87  Aligned_cols=155  Identities=10%  Similarity=0.129  Sum_probs=122.5

Q ss_pred             cccCCcccccchheeeecccccchhHHHHHH-HHHHHHHHHHHHHHhhccChhhhhc---chH---HHHHHHhccch-hH
Q psy7925         228 RIFGPIAWTLPVFVALSTFGGVNGIILTTSS-VLVTVVYVLTNVAFYTTLSPAEVLN---SEA---TFANRIFGPIA-WT  299 (472)
Q Consensus       228 e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~-l~v~vlY~~~~~~~~~~lp~~~l~~---~~~---~l~~~~~G~~~-~i  299 (472)
                      +|.+++++..|+.+..             +. ..+...|+-.+.++++..+.+++.+   +++   ..++..+|+.| .+
T Consensus       206 ~g~~~~~~~~~~~i~~-------------G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~l  272 (378)
T TIGR00796       206 RGVTKPKKITKYTIKA-------------GLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFL  272 (378)
T ss_pred             hCCCCHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHH
Confidence            3777889999998776             44 6677778888888888888877653   455   45566689987 46


Q ss_pred             HHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy7925         300 LPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWL  379 (472)
Q Consensus       300 i~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l~~~~~~l~~l~~~~~l~  379 (472)
                      +.+.+..+++++.++.+.++++             +|+|+++|  .|+++......+...++...+++++.++..-..++
T Consensus       273 l~i~v~lACLtT~iGli~~~a~-------------~f~~~~~k--~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~  337 (378)
T TIGR00796       273 LGLIITLACLTTAVGLTTACSE-------------YFHKLVPK--LSYKTWVIVFTLFSFIVANLGLTQIISISIPVLMI  337 (378)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------------HHHHhcCC--CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            8888999999999999999666             45555554  99999999988888888888999999999888888


Q ss_pred             HHHHHHhHHHh--hhhcCCCCCCCcccchhHHH
Q psy7925         380 SIGVGVLCLPV--LRYTQPDLPRPIKVHLIFPA  410 (472)
Q Consensus       380 ~yil~~~a~~~--l~~~~~~~~~~~~~~~~~~i  410 (472)
                      .|-......+.  +|++.|+.+|+||.+.....
T Consensus       338 ~YP~~i~lill~ll~~~~~~~~~~y~~~~~~~~  370 (378)
T TIGR00796       338 IYPLAIVLILLSFLRKLWDSKRAVYQITLIVAL  370 (378)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCeeehHHHHHH
Confidence            88877777776  77777777899998764433

transmembrane helical spanners.

>KOG1288|consensus

Probab=87.87  E-value=1.4  Score=49.50  Aligned_cols=97  Identities=12%  Similarity=-0.014  Sum_probs=68.4

Q ss_pred             cccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHHHHHhccchhHHH
Q psy7925         222 TWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLP  301 (472)
Q Consensus       222 ~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~  301 (472)
                      .-++++.|-|.|.|.||+....             ++..-.+.|+++....-...|..-+-++=+.+  +-.--+++++.
T Consensus       312 AGAnMSgELk~PSkSIP~GTl~-------------ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~v~--~~isl~p~fi~  376 (945)
T KOG1288|consen  312 AGANMSGELKAPSKSIPKGTLS-------------AVAFTFFVYVLVIFLMGCTVPRTLLQNDYDVM--MHISLHPPFIL  376 (945)
T ss_pred             cCCCcCccccCccccCCccchH-------------HHHHHHHHHHHHHHHhccCcchHHhhhchhhe--eeccccchHHH
Confidence            3345566666679999999776             77777888888877776666654443322200  00112235567


Q ss_pred             HHHHHHhhhchhhhhhhhhHHHHHhhhcCCCC
Q psy7925         302 VFVALSTFGGVNGIILTTSRLFYAGACEGQMP  333 (472)
Q Consensus       302 i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP  333 (472)
                      ++++..++.+.+..+.++||++.++|||..+|
T Consensus       377 iGi~sttlfss~s~liGasrvL~alakD~lfg  408 (945)
T KOG1288|consen  377 IGILSTTLFSSMSGLIGASRVLEALAKDDLFG  408 (945)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHhhcccch
Confidence            78888888888999999999999999999987

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=86.98  E-value=48  Score=35.91  Aligned_cols=115  Identities=15%  Similarity=0.131  Sum_probs=77.6

Q ss_pred             hHHHHHHHHHHHhhcchhhhhhhhhh----hc------CcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhc---
Q psy7925          31 TSIALSFYSGLFAYNGWNYLNFIIEE----LK------DPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLN---   97 (472)
Q Consensus        31 ~~~~~~~~~~~~a~~G~~~~~~~~~E----~k------~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~---   97 (472)
                      ..++.++...+++|+=...+..+...    -+      +.+|..-|++..+..+..++|++-.++..+.++++|..+   
T Consensus       209 ~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~  288 (443)
T PRK13629        209 VTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKA  288 (443)
T ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            35788889999998766666555433    32      234778999999999999999999999999999988753   


Q ss_pred             -chhHHHHHHHHhcc---------c-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7925          98 -SEAVAVTFANRIFG---------P-IAWTLPVFVALSTFGGVNGIILTTSRLFYAGAC  145 (472)
Q Consensus        98 -~~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~  145 (472)
                       +.+.....+++.-+         + +....+++..++...+..|-.++.--.+..+.+
T Consensus       289 qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~  347 (443)
T PRK13629        289 QNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLIL  347 (443)
T ss_pred             hCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             22223333333222         1 355666776777777777766665555555553

>COG3949 Uncharacterized membrane protein [Function unknown]

Probab=85.18  E-value=52  Score=34.39  Aligned_cols=62  Identities=15%  Similarity=0.098  Sum_probs=43.7

Q ss_pred             cchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHHHHh
Q psy7925          45 NGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFANRI  109 (472)
Q Consensus        45 ~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (472)
                      ...-....+++|+|++ |+.-+|-..+-++.+++-.+.+.......+  ++.+.|-|....+++.
T Consensus       193 ~~~avLv~lg~~~~~~-~~~~~g~l~gglIlgvl~~l~nlsLi~~~~--~v~~~dIP~l~i~~~~  254 (349)
T COG3949         193 VAVAVLVPLGGRMESR-KVSGIGGLIGGLILGVLLFLINLSLIALYD--KVVNYDIPLLTIAKNF  254 (349)
T ss_pred             hHhHhhhhhccccccc-chhhhhhhhhhHHHHHHHHHHHHHHHhhcc--hhhccCCcHHHHHHhc
Confidence            3445556778999996 566888888888888887777777666554  6666676666665553

>PLN03074 auxin influx permease; Provisional

Probab=85.16  E-value=2  Score=46.71  Aligned_cols=64  Identities=13%  Similarity=0.132  Sum_probs=53.5

Q ss_pred             CChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccCh
Q psy7925          28 TDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSP   92 (472)
Q Consensus        28 ~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~   92 (472)
                      +++..+..++...+|+|.|.-..-.+-.|+|||+ +.++....+...+.+.|+...+..|...+.
T Consensus       230 ~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~-~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~  293 (473)
T PLN03074        230 TKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KFKYIYLAATLYVLTLTLPSAAAVYWAFGD  293 (473)
T ss_pred             hhHHHHHHHHHHHHHHhcccccHHHHHHhccChh-cccchHHHHHHHHHHHHHHHHHeeeeeech
Confidence            3566677777789999999999999999999996 589888888888888888887777776663

>PHA02764 hypothetical protein; Provisional

Probab=84.05  E-value=4  Score=42.26  Aligned_cols=29  Identities=21%  Similarity=0.187  Sum_probs=25.3

Q ss_pred             hhhhHHHHHhhhcCCCChhhhcccCCCCCch
Q psy7925         317 LTTSRLFYAGACEGQMPEILTMIQVTKMTPT  347 (472)
Q Consensus       317 ~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~  347 (472)
                      -..||..++|+-|+.+|+.|+|++|  +.|.
T Consensus       257 ~~~srli~~~~fd~~lpe~f~k~~~--nv~~  285 (399)
T PHA02764        257 KIQSRLIQTMSFDKVLPEKFSKINP--NVLL  285 (399)
T ss_pred             chHHHHHHHHHhhhhchHHHhccCC--Ccee
Confidence            3589999999999999999999985  4665

>PLN00149 potassium transporter; Provisional

Probab=83.90  E-value=18  Score=41.67  Aligned_cols=109  Identities=15%  Similarity=0.150  Sum_probs=48.6

Q ss_pred             HHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChh-hhcccCC-CCC
Q psy7925         268 TNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEI-LTMIQVT-KMT  345 (472)
Q Consensus       268 ~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~-f~kv~~k-~~t  345 (472)
                      -+-+++...|.+ ..+.++++...++....|-..+.+..++.-+--+.+.+.-.+..+.-+-|.+|+. .-|.+++ +|.
T Consensus       317 GQaA~l~~~p~~-~~~~~~pFy~~iP~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQ  395 (779)
T PLN00149        317 GQAAYLSKHHVI-ESDYRIGFYVSVPEKLRWPVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQ  395 (779)
T ss_pred             hHHHHHhcCcch-hccccCcHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCc
Confidence            334444434432 2334457777666555443333333322222233333444455555566899962 3333333 333


Q ss_pred             ---chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy7925         346 ---PTPAVLTIAFLSLLYLMSSNIFALINYVGFAT  377 (472)
Q Consensus       346 ---P~~al~~~~~i~~ii~l~~~~~~l~~l~~~~~  377 (472)
                         |..--++......+.+.+.+-..+.+...+..
T Consensus       396 IYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYGiAV  430 (779)
T PLN00149        396 IYIPEINWTLMLLCLAVTVGFRDTKRLGNASGLAV  430 (779)
T ss_pred             eeeHHHHHHHHHHHHhheeEecChHHHHHHhhhhh
Confidence               43333333333333333555666665554443

>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V))

Probab=82.88  E-value=74  Score=34.35  Aligned_cols=107  Identities=15%  Similarity=0.140  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCh-hhhhcchH---HHHHHHhccchh-HHHHHHHHHhhhchhhhhhhhhHHHHHhhhc
Q psy7925         255 TTSSVLVTVVYVLTNVAFYTTLSP-AEVLNSEA---TFANRIFGPIAW-TLPVFVALSTFGGVNGIILTTSRLFYAGACE  329 (472)
Q Consensus       255 ~~s~l~v~vlY~~~~~~~~~~lp~-~~l~~~~~---~l~~~~~G~~~~-ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~d  329 (472)
                      ..+.....++|..+.+.-...-+. .+-.|.++   ..++..+|+.|. ++.+....+++.+..+.+.++++.+...-  
T Consensus       229 ~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~--  306 (427)
T PF05525_consen  229 LIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELF--  306 (427)
T ss_pred             HHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence            346677788888877766555544 33455555   456666899885 57788888999999999999998877763  


Q ss_pred             CCCChhhhcccCCCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy7925         330 GQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFA  376 (472)
Q Consensus       330 g~LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l~~~~~~l~~l~~~~  376 (472)
                                  + |.+++.......+...++.-.+++++.++..=.
T Consensus       307 ------------~-kisY~~~v~i~~i~S~~ian~Gl~~Ii~~s~Pi  340 (427)
T PF05525_consen  307 ------------P-KISYKVWVIIFTIFSFIIANLGLDQIIKISVPI  340 (427)
T ss_pred             ------------c-ccChHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence                        2 456665554444444444444667776555433

They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane

>PLN00151 potassium transporter; Provisional

Probab=81.92  E-value=22  Score=41.17  Aligned_cols=94  Identities=13%  Similarity=0.145  Sum_probs=42.2

Q ss_pred             chHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCCh-hhhcccCC-CCC---chhHHHHHHHHHH
Q psy7925         284 SEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPE-ILTMIQVT-KMT---PTPAVLTIAFLSL  358 (472)
Q Consensus       284 ~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~-~f~kv~~k-~~t---P~~al~~~~~i~~  358 (472)
                      .++++...++....|-..+.+..++.-+--+.+.++-.+..+.-+-|.+|+ +.-|.+++ +|.   |..--++......
T Consensus       405 ~~npFy~svP~~~~wP~~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~vNw~Lmv~~i~  484 (852)
T PLN00151        405 AEQIFFSSVPSSLFWPVFLIANLAALIASRAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPVINWFLLVMCLV  484 (852)
T ss_pred             ccCcHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHh
Confidence            344666666555444332322222222222333333444445555689996 23333333 343   4433333333333


Q ss_pred             HHHhhhhHHHHHHHHHHHH
Q psy7925         359 LYLMSSNIFALINYVGFAT  377 (472)
Q Consensus       359 ii~l~~~~~~l~~l~~~~~  377 (472)
                      +.+.+.+-..+.+...+..
T Consensus       485 v~l~F~~s~~l~~AYGiAV  503 (852)
T PLN00151        485 VVCSFRSITDIGNAYGIAE  503 (852)
T ss_pred             heeeecCHHHHHHHhhhhh
Confidence            3333555666665554443

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=81.78  E-value=0.52  Score=48.94  Aligned_cols=64  Identities=22%  Similarity=0.337  Sum_probs=57.3

Q ss_pred             CChhHHHHHHHHHHHhhcchhhhhhhhhhhcCccc--chhhHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7925          28 TDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIV--NLPRAIYISCTLVTVVYVLTNVAFYTTLS   91 (472)
Q Consensus        28 ~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~--~~p~a~~~~~~~~~~~y~~~~~~~~~~~~   91 (472)
                      .++.++..++....|+|.+....-.+.+|+|||+|  ++-|+...+...+.++|.+..+.-+...+
T Consensus       189 ~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg  254 (409)
T PF01490_consen  189 ISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFG  254 (409)
T ss_pred             chhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhhhhhHHhhhhhhcccceee
Confidence            45679999999999999999999999999999886  45699999999999999999998888765

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional

Probab=81.49  E-value=85  Score=34.05  Aligned_cols=74  Identities=15%  Similarity=0.125  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCh-hhhhcchHH---HHHHHhccchh-HHHHHHHHHhhhchhhhhhhhhHHHHHh
Q psy7925         253 ILTTSSVLVTVVYVLTNVAFYTTLSP-AEVLNSEAT---FANRIFGPIAW-TLPVFVALSTFGGVNGIILTTSRLFYAG  326 (472)
Q Consensus       253 ~~~~s~l~v~vlY~~~~~~~~~~lp~-~~l~~~~~~---l~~~~~G~~~~-ii~i~~l~s~~~~~~~~~~~~SRvl~a~  326 (472)
                      ....+.....++|..+.+.-...-+. +|.+|+++.   .....+|+++. +..+....+++.+..+.++++++.+...
T Consensus       231 ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~  309 (439)
T PRK15433        231 AGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQY  309 (439)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33557788888998888777655442 334455653   44455788875 4667778899999999999999876554

>KOG2082|consensus

Probab=81.41  E-value=0.85  Score=51.59  Aligned_cols=66  Identities=12%  Similarity=0.033  Sum_probs=36.9

Q ss_pred             hccCCcchhHhHhhhcc------CCCc-------hhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccc
Q psy7925         172 TCEGQMPEILTMIQVTK------MTPT-------PAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLP  238 (472)
Q Consensus       172 ~~~~~~~~~~~~~~~~~------~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip  238 (472)
                      .-+..+|+.+.|-++.+      ..|+       ....+..|--++-.||-      +--|+-+-.+-+..-+++||.||
T Consensus       371 ~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIfFP------sVTGImaGSNrSGDLkDaQkSIP  444 (1075)
T KOG2082|consen  371 FKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIFFP------SVTGIMAGSNRSGDLKDAQKSIP  444 (1075)
T ss_pred             hhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhhcc------ccceeeecCCCCccccchhhcCc
Confidence            34556677766666554      2222       22233333333222332      33444455566677788899999


Q ss_pred             hheee
Q psy7925         239 VFVAL  243 (472)
Q Consensus       239 ~~i~i  243 (472)
                      .....
T Consensus       445 vGTI~  449 (1075)
T KOG2082|consen  445 VGTIA  449 (1075)
T ss_pred             hhhhH
Confidence            98777

>TIGR00794 kup potassium uptake protein

Probab=81.22  E-value=20  Score=40.89  Aligned_cols=99  Identities=14%  Similarity=0.032  Sum_probs=45.1

Q ss_pred             hHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCCh-hhhcccCC-CCC---chhHHHHHHHHHHH
Q psy7925         285 EATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPE-ILTMIQVT-KMT---PTPAVLTIAFLSLL  359 (472)
Q Consensus       285 ~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~-~f~kv~~k-~~t---P~~al~~~~~i~~i  359 (472)
                      .+|+...++....+-..+.+..++.-+--+.+.++-.+..+.-+-|.+|+ ..-|.+++ +|.   |..--++......+
T Consensus       300 ~NpFf~~~P~~~~~p~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~vNw~Lmv~~i~v  379 (688)
T TIGR00794       300 KNPFFLSIPDWALWPLFIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFVNWLLMLGVIAV  379 (688)
T ss_pred             cCcHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHhe
Confidence            34666655433333222222222222222333344455556666799996 33444444 333   43333333333333


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHH
Q psy7925         360 YLMSSNIFALINYVGFATWLSIGV  383 (472)
Q Consensus       360 i~l~~~~~~l~~l~~~~~l~~yil  383 (472)
                      .+.+.+-..+.+..++......++
T Consensus       380 vl~F~~S~~la~AYGiaVt~tM~i  403 (688)
T TIGR00794       380 TAGFRDTNNLGAAYGIAVTGTFLV  403 (688)
T ss_pred             eEEecChHHHHHHhhhhhhhhhHH
Confidence            333556667766555544333333

Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.

>PLN00148 potassium transporter; Provisional

Probab=80.73  E-value=23  Score=40.80  Aligned_cols=92  Identities=16%  Similarity=0.205  Sum_probs=42.4

Q ss_pred             hHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCCh-hhhcccCC-CCC---chhHHHHHHHHHHH
Q psy7925         285 EATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPE-ILTMIQVT-KMT---PTPAVLTIAFLSLL  359 (472)
Q Consensus       285 ~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~-~f~kv~~k-~~t---P~~al~~~~~i~~i  359 (472)
                      ++++...++....|-..+.+.+++.-+--+.+.++-.+..+.-+-|.+|+ +.-|.+++ +|.   |..--++......+
T Consensus       329 ~npFf~~iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~v  408 (785)
T PLN00148        329 PNSFYDSIPDPVFWPVFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLAV  408 (785)
T ss_pred             cCcHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHHh
Confidence            45677666555444333333332222222333344445555556689996 23333333 343   44333333333333


Q ss_pred             HHhhhhHHHHHHHHHHH
Q psy7925         360 YLMSSNIFALINYVGFA  376 (472)
Q Consensus       360 i~l~~~~~~l~~l~~~~  376 (472)
                      .+.+.+-..+.+...+.
T Consensus       409 v~~F~~s~~la~AYGiA  425 (785)
T PLN00148        409 TIGFRDTTLIGNAYGLA  425 (785)
T ss_pred             heeeccchhHHHhhhhh
Confidence            33355555666555443

>PLN00150 potassium ion transporter family protein; Provisional

Probab=80.44  E-value=21  Score=41.14  Aligned_cols=94  Identities=15%  Similarity=0.166  Sum_probs=43.0

Q ss_pred             chHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCCh-hhhcccCC-CCC---chhHHHHHHHHHH
Q psy7925         284 SEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPE-ILTMIQVT-KMT---PTPAVLTIAFLSL  358 (472)
Q Consensus       284 ~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~-~f~kv~~k-~~t---P~~al~~~~~i~~  358 (472)
                      .++++...++....|-..+.+..++.-+--+.+.++-.+..+.-+-|.+|+ +.-|.+++ +|.   |..--++......
T Consensus       345 ~~npFf~~iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~vNw~Lmv~~i~  424 (779)
T PLN00150        345 VNDPFYRSLPKPIYWPIFVLATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPEINWILMVLCLV  424 (779)
T ss_pred             ccCcHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHh
Confidence            344666666554444333333332222223333344445555556689996 23333433 333   4333333333333


Q ss_pred             HHHhhhhHHHHHHHHHHHH
Q psy7925         359 LYLMSSNIFALINYVGFAT  377 (472)
Q Consensus       359 ii~l~~~~~~l~~l~~~~~  377 (472)
                      +.+.+.+-..+.+...+..
T Consensus       425 vv~~F~~s~~l~~AYGiAV  443 (779)
T PLN00150        425 ITAGFRDTDEIGNAYGIAV  443 (779)
T ss_pred             heEEecChHHHHHHhhhhe
Confidence            3333556666665555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	472
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	8e-15
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	1e-13
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	8e-11
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	3e-07
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	2e-07
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445

 Score = 75.5 bits (186), Expect = 8e-15
 Identities = 41/264 (15%), Positives = 79/264 (29%), Gaps = 21/264 (7%)

Query: 20  YFTFENSTTDVTSIALSFYSG--------LFAYNGWNYLNFIIEELKDPIVNLPRAIYIS 71
           +F  E          L  +          L+++ G    +     +K+P  N+P A    
Sbjct: 172 WFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGG 231

Query: 72  CTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFANRIFGPI-AWTLPVFVALSTFGGVN 130
             +  V YVL+  A    +  A +  S +     A    G      +    A    G + 
Sbjct: 232 VLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLG 291

Query: 131 GIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQVTKMT 190
           G  L   +   A A +G  P I   +       TP    I+           ++ + +++
Sbjct: 292 GWTLLAGQTAKAAADDGLFPPIFARVNKAG---TPVAGLIIVG--------ILMTIFQLS 340

Query: 191 PTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVN 250
                 T  F  +  +          Y   A     +  FG           ++    + 
Sbjct: 341 SISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTTIAFLYCIW 400

Query: 251 GII-LTTSSVLVTVVYVLTNVAFY 273
            ++      V+ + V ++   A Y
Sbjct: 401 AVVGSGAKEVMWSFVTLMVITAMY 424

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445

 Score = 72.0 bits (177), Expect = 1e-13
 Identities = 35/219 (15%), Positives = 66/219 (30%), Gaps = 20/219 (9%)

Query: 251 GIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFA---NRIFGPI-AWTLPVFVAL 306
             I     ++  V YVL+  A    +  A +  S + F        G      +    A 
Sbjct: 227 ATIGGV--LIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAA 284

Query: 307 STFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSS-- 364
              G + G  L   +   A A +G  P I   +     TP   ++ +  L  ++ +SS  
Sbjct: 285 GCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAG-TPVAGLIIVGILMTIFQLSSIS 343

Query: 365 -----NIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFV 419
                    + +     T +        L +L +      RP      + A   IA ++ 
Sbjct: 344 PNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARP-----AYLAVTTIAFLYC 398

Query: 420 TLVPMMASPVETGIGCLMIATSVPVYMVFIAWRNKPKVF 458
               + +   E     + +     +Y      R     +
Sbjct: 399 IWAVVGSGAKEVMWSFVTLMVITAMY-ALNYNRLHKNPY 436

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444

 Score = 62.7 bits (153), Expect = 8e-11
 Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 4/132 (3%)

Query: 42  FAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAV 101
            +Y G+  +    E +++P  N+PRAI+IS  +V  VYV   ++    L   E++ +   
Sbjct: 199 LSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASEN 258

Query: 102 AVTFANR-IFGPIAWTLPVFVAL-STFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVT 159
           A+  A +   G + + L    AL S    +N  I   + + Y+ A +G++PE     +  
Sbjct: 259 ALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFE--RKV 316

Query: 160 KMTPTPAVLTIV 171
               T  +    
Sbjct: 317 WFKSTEGLYITS 328

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 34/217 (15%), Positives = 76/217 (35%), Gaps = 14/217 (6%)

Query: 251 GIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSE----ATFANRIFGPIAWTLPVFVAL 306
            I +  S ++V  VYV   ++    L   E++ +     A  A    G + + L    AL
Sbjct: 224 AIFI--SILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGAL 281

Query: 307 -STFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSN 365
            S    +N  I   + + Y+ A +G++PE     +      T  +   + L +L+ +  N
Sbjct: 282 FSISSAMNATIYGGANVAYSLAKDGELPEFFE--RKVWFKSTEGLYITSALGVLFALLFN 339

Query: 366 IFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVTLVPMM 425
           +  + +       +     +L   +L          +    I     ++  VF+ L+   
Sbjct: 340 MEGVASITSAVFMVIYLFVILSHYILIDEVGGRKEIVIFSFI-----VVLGVFLLLLYYQ 394

Query: 426 ASPVETGIGCLMIATSVPVYMVFIAWRNKPKVFTKSV 462
                     ++      +    I  +   + F+ ++
Sbjct: 395 WITNRFVFYGIIATFIGVLIFEIIYRKVTKRTFSNNM 431

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 24/158 (15%), Positives = 50/158 (31%), Gaps = 10/158 (6%)

Query: 7   IMIGVANIFGETKYFTFENSTTDVTSIALSFYSGL----FAYNGWNYLNFIIEELKDPIV 62
            +  +    G       ++ T       +           +Y G       + E+ +P  
Sbjct: 173 ALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGR 232

Query: 63  NLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFA---NRIFGPIAWTLPV 119
           + P A+ +       +  +  ++    +   E+  S  V  TF    + +   I WT+ V
Sbjct: 233 DYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRV 292

Query: 120 F---VALSTFGGVNGIILTTSRLFYAGACEGQMPEILT 154
               + L     +   I+  SR  Y  A +  +P    
Sbjct: 293 ISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFA 330

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511

 Score = 44.1 bits (104), Expect = 7e-05
 Identities = 26/221 (11%), Positives = 65/221 (29%), Gaps = 26/221 (11%)

Query: 257 SSVLVTVVYVLTNVAFYTTLSPAEVLNSEATF------ANRIFGPIAWTLPVF---VALS 307
             V    +  +  ++    +   E+  S           + +   I WT+ V    + L 
Sbjct: 241 LMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLG 300

Query: 308 TFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYL------ 361
               +   I+  SR  Y  A +  +P     +    +  T  +  +   S+  +      
Sbjct: 301 VLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMNKNGVPVTLVISQLVITSIALIILTNTG 360

Query: 362 --MSSNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHL---------IFPA 410
              + +    +         +  +  +   VL    PDL R   +           I   
Sbjct: 361 GGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIPGGKGVKLVVAIVGL 420

Query: 411 AYLIASVFVTLVPMMASPVETGIGCLMIATSVPVYMVFIAW 451
              I +  V+ +P      ++    + +     + ++ + +
Sbjct: 421 LTSIMAFIVSFLPPDNIQGDSTDMYVELLVVSFLVVLALPF 461

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 7e-07
 Identities = 64/481 (13%), Positives = 113/481 (23%), Gaps = 186/481 (38%)

Query: 2   DYVVQIMIG--VANIFGETK-----YFTFENSTTDVTSIALSFYSGLFAYN-GWNYLNFI 53
           D    I+    + +I             F    +    +   F   +   N  +  ++ I
Sbjct: 40  DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF-LMSPI 98

Query: 54  IEELKDPIVNLPRAIYISC-----------------------TLVTVVYVL---TNVAFY 87
             E + P  ++   +YI                          L   +  L    NV   
Sbjct: 99  KTEQRQP--SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156

Query: 88  -------TTLSPAEVLNSEAVAVTFANRIFGPIAWTLPVFVALSTFGGVN---GIILTTS 137
                  T ++  +V  S  V      +IF    W              N    ++    
Sbjct: 157 GVLGSGKTWVA-LDVCLSYKVQCKMDFKIF----WL--------NLKNCNSPETVLEMLQ 203

Query: 138 RLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQVTKMTPTPAVLT 197
           +L Y      Q+    T  +    +     +  +  E      L  +  +K         
Sbjct: 204 KLLY------QIDPNWT-SRSDHSSNIKLRIHSIQAE------LRRLLKSKPYEN----- 245

Query: 198 IAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNG---IIL 254
                LL L   N+                      A     F         N    I+L
Sbjct: 246 ----CLLVL--LNV-----------QN---------AKAWNAF---------NLSCKILL 270

Query: 255 TTSSVLVT------VVYVLTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALST 308
           TT    VT          ++      TL+P E    ++                      
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDE---VKSLLLK------------------ 309

Query: 309 FGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFA 368
                          Y       +P      +V    P      +   S++     +  A
Sbjct: 310 ---------------YLDCRPQDLPR-----EVLTTNP----RRL---SIIAESIRDGLA 342

Query: 369 LINYVGFATWLSIGVGVL------CLPVLRYTQPDLPRPIKVHL-IFPAAYLI-ASVFVT 420
             +      W  +    L       L VL   +P   R +   L +FP +  I   +   
Sbjct: 343 TWDN-----WKHVNCDKLTTIIESSLNVL---EPAEYRKMFDRLSVFPPSAHIPTILLSL 394

Query: 421 L 421
           +
Sbjct: 395 I 395

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	472
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	99.96
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	99.95
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	99.94
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	99.54
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	99.53
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	99.29

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=99.96  E-value=1.8e-27  Score=246.88  Aligned_cols=238  Identities=16%  Similarity=0.166  Sum_probs=176.7

Q ss_pred             ChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHHHH
Q psy7925          29 DVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFANR  108 (472)
Q Consensus        29 ~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (472)
                      ++.++..++..++|+|.|+|.+++++||+|||+|++|||+..+..+++++|++.+++.....|++++.+++.+.....++
T Consensus       189 ~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  268 (445)
T 3l1l_A          189 TFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARM  268 (445)
T ss_dssp             ----HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999887777777777777


Q ss_pred             hccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHhHhhhc
Q psy7925         109 IFGPI-AWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQVT  187 (472)
Q Consensus       109 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~~~~~~  187 (472)
                      .+++. ...+.+.++++                                                               
T Consensus       269 ~~g~~~~~~~~~~~~~~---------------------------------------------------------------  285 (445)
T 3l1l_A          269 ALGDTAGAIVSFCAAAG---------------------------------------------------------------  285 (445)
T ss_dssp             HHCTTHHHHHHHHHHHH---------------------------------------------------------------
T ss_pred             HhhHHHHHHHHHHHHHH---------------------------------------------------------------
Confidence            77765 35555444444                                                               


Q ss_pred             cCCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHH
Q psy7925         188 KMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVL  267 (472)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~  267 (472)
                                                                                                      
T Consensus       286 --------------------------------------------------------------------------------  285 (445)
T 3l1l_A          286 --------------------------------------------------------------------------------  285 (445)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCch
Q psy7925         268 TNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPT  347 (472)
Q Consensus       268 ~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP~  347 (472)
                                                              .+++.++.+++.+|.+++|+|||.+|++|+|+| |+++|+
T Consensus       286 ----------------------------------------~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~-~~~~P~  324 (445)
T 3l1l_A          286 ----------------------------------------CLGSLGGWTLLAGQTAKAAADDGLFPPIFARVN-KAGTPV  324 (445)
T ss_dssp             ----------------------------------------HTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCC-TTCCCH
T ss_pred             ----------------------------------------HHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcC-CCCCCH
Confidence                                                    445555555556666666666666666666666 457787


Q ss_pred             hHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccchhHHHHHHHHHHHHH
Q psy7925         348 PAVLTIAFLSLLYLMS-------SNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLIASVFVT  420 (472)
Q Consensus       348 ~al~~~~~i~~ii~l~-------~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~~~~~il~iv~~l~li  420 (472)
                      ++++++.+++.++.+.       ..++.+.++.++..++.|.+...+.+++|+|+| .+| ++...+.+.++.+.+++++
T Consensus       325 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~-~~r-~~~~~~~~~~~~~~~~~~~  402 (445)
T 3l1l_A          325 AGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF-GKA-RPAYLAVTTIAFLYCIWAV  402 (445)
T ss_dssp             HHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS-GGG-CTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-ccc-cchhHHHHHHHHHHHHHHH
Confidence            8777777766655542       246788899999999999999999999998876 222 2333477777777777775


Q ss_pred             hhcccccchhHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7925         421 LVPMMASPVETGIGCLMIATSVPVYMVFIAWRNKP  455 (472)
Q Consensus       421 ~~~~~~~~~~~~i~~~v~~lgl~iy~~~~~~~~~~  455 (472)
                      +.   ..+........+.++|+++|++++|+++++
T Consensus       403 ~~---~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~  434 (445)
T 3l1l_A          403 VG---SGAKEVMWSFVTLMVITAMYALNYNRLHKN  434 (445)
T ss_dssp             HH---SCHHHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred             HH---cCHHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence            43   344455667778888888887665554443

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=99.95  E-value=4.2e-26  Score=240.90  Aligned_cols=210  Identities=15%  Similarity=0.231  Sum_probs=149.9

Q ss_pred             HHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhhcchhHHHHHHH--Hhc
Q psy7925          33 IALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVLNSEAVAVTFAN--RIF  110 (472)
Q Consensus        33 ~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  110 (472)
                      .+.++...+|+|.|+|.+++++||+|||+|++|||+..+..+++++|++.+++....+|++++..+++....+..  +..
T Consensus       203 ~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (511)
T 4djk_A          203 TLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHV  282 (511)
T ss_dssp             TTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHh
Confidence            345677889999999999999999999999999999999999999999999999999998888766554333321  122


Q ss_pred             c----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhccCCcchhHhHhhh
Q psy7925         111 G----PIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCEGQMPEILTMIQV  186 (472)
Q Consensus       111 ~----~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~~~~~~~~~~~~~  186 (472)
                      |    +....+.+.++++.+++.|+                                                       
T Consensus       283 g~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------------  307 (511)
T 4djk_A          283 APEIEWTVRVISALLLLGVLAEIAS-------------------------------------------------------  307 (511)
T ss_dssp             CSSCTTHHHHHHHHHHHHHHHHHHH-------------------------------------------------------
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHH-------------------------------------------------------
Confidence            2    22344544444455555444                                                       


Q ss_pred             ccCCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHH
Q psy7925         187 TKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYV  266 (472)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~  266 (472)
                                                                                                      
T Consensus       308 --------------------------------------------------------------------------------  307 (511)
T 4djk_A          308 --------------------------------------------------------------------------------  307 (511)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCChhhhcccCCCCCc
Q psy7925         267 LTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTP  346 (472)
Q Consensus       267 ~~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~~f~kv~~k~~tP  346 (472)
                                                                      .+++.+|++++++|||.+||+|+|+| |+++|
T Consensus       308 ------------------------------------------------~~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P  338 (511)
T 4djk_A          308 ------------------------------------------------WIVGPSRGMYVTAQKNLLPAAFAKMN-KNGVP  338 (511)
T ss_dssp             ------------------------------------------------HTTHHHHHTCHHHHGGGCSSSCCCCC-SSSCC
T ss_pred             ------------------------------------------------HHHHHHHHHHHHccCCcccHHHHhcC-CCCCc
Confidence                                                            44555555555555555556666666 35677


Q ss_pred             hhHHHHHHHHHHH-HHhhh--------hHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccc------hhHHHH
Q psy7925         347 TPAVLTIAFLSLL-YLMSS--------NIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVH------LIFPAA  411 (472)
Q Consensus       347 ~~al~~~~~i~~i-i~l~~--------~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~------~~~~il  411 (472)
                      .++++++..+..+ .+...        .++.+.++.++..++.|.+...+.+++|+|+++.+||||.+      ....++
T Consensus       339 ~~ai~~~~~~~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~  418 (511)
T 4djk_A          339 VTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIPGGKGVKLVVAIV  418 (511)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCCSCCCSSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCchHHHHHHHH
Confidence            7776666333222 22222        36778899999999999999999999999888888999988      346667


Q ss_pred             HHHHHHHHHhhcccc
Q psy7925         412 YLIASVFVTLVPMMA  426 (472)
Q Consensus       412 ~iv~~l~li~~~~~~  426 (472)
                      +++.+++.++...++
T Consensus       419 ~~~~~~~~~~~~~~p  433 (511)
T 4djk_A          419 GLLTSIMAFIVSFLP  433 (511)
T ss_dssp             HHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHeeeeC
Confidence            777777766655544

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=99.94  E-value=7e-26  Score=235.12  Aligned_cols=247  Identities=16%  Similarity=0.185  Sum_probs=172.1

Q ss_pred             CCccccccCCCCChhHHHHHHHHHHHhhcchhhhhhhhhhhcCcccchhhHHHHHHHHHHHHHHHHHHHHHhccChhhhh
Q psy7925          17 ETKYFTFENSTTDVTSIALSFYSGLFAYNGWNYLNFIIEELKDPIVNLPRAIYISCTLVTVVYVLTNVAFYTTLSPAEVL   96 (472)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~~~~~~~~~E~k~p~~~~p~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~   96 (472)
                      ++++++-+..++++.++..++...+|+|.|+|.+++++||+|||+|++|||+..+..+++++|++..++.....|++++.
T Consensus       174 ~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~  253 (444)
T 3gia_A          174 HPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELI  253 (444)
T ss_dssp             CGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             ChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHh
Confidence            45555422233456788999999999999999999999999999999999999999999999999999999999998876


Q ss_pred             cc-hhHHHHHHHHhccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhccCCCCCchhHHHHhhhcc
Q psy7925          97 NS-EAVAVTFANRIFGPIA-WTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPEILTMIQVTKMTPTPAVLTIVTCE  174 (472)
Q Consensus        97 ~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~g~~p~~~~~~~~~~~tP~~~~~~~~~~~  174 (472)
                      ++ +.+.....++.+++.. ..+.+.++++.                                                 
T Consensus       254 ~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~-------------------------------------------------  284 (444)
T 3gia_A          254 KASENALAVAAKPFLGNLGFLLISIGALFSI-------------------------------------------------  284 (444)
T ss_dssp             HTGGGHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
T ss_pred             cccchhHHHHHHHHhhHHHHHHHHHHHHHHH-------------------------------------------------
Confidence            53 3454455555555432 34444444444                                                 


Q ss_pred             CCcchhHhHhhhccCCCchhHHHHHHHHhhhheecchhhhhcccccccccccccccCCcccccchheeeecccccchhHH
Q psy7925         175 GQMPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIIL  254 (472)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~  254 (472)
                                                                                                      
T Consensus       285 --------------------------------------------------------------------------------  284 (444)
T 3gia_A          285 --------------------------------------------------------------------------------  284 (444)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccChhhhhcchHHHHHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCCCh
Q psy7925         255 TTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQMPE  334 (472)
Q Consensus       255 ~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~LP~  334 (472)
                                                                            +++.++.+++.+|++++++|||.+||
T Consensus       285 ------------------------------------------------------~~~~~~~~~~~sR~l~a~a~dg~lP~  310 (444)
T 3gia_A          285 ------------------------------------------------------SSAMNATIYGGANVAYSLAKDGELPE  310 (444)
T ss_dssp             ------------------------------------------------------HHHHHHHHTTTHHHHHHHHHHSSCCS
T ss_pred             ------------------------------------------------------HHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence                                                                  44455555556666666666666666


Q ss_pred             hhhcccCCCCCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccchhHHHHHHH
Q psy7925         335 ILTMIQVTKMTPTPAVLTIAFLSLLYLMSSNIFALINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVHLIFPAAYLI  414 (472)
Q Consensus       335 ~f~kv~~k~~tP~~al~~~~~i~~ii~l~~~~~~l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~~~~~il~iv  414 (472)
                      +|+|.| | ++|.++++++.+++.+..+..+++.+.++.++..++.|.+...+.+++|+|+|+  +     .+.+.++++
T Consensus       311 ~f~~~~-~-~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~-----~~~~~~~~~  381 (444)
T 3gia_A          311 FFERKV-W-FKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVGG--R-----KEIVIFSFI  381 (444)
T ss_dssp             SCCTTS-C-CSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC--C-----HHHHHHHHH
T ss_pred             HHhCCC-C-CCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--c-----chHHHHHHH
Confidence            666665 3 458888888888888888777899999999999999999999999998887643  1     155566666


Q ss_pred             HHHHHHhhccc---c-cchhHHHHHHHHHHHHHHHHHHHHHhccC
Q psy7925         415 ASVFVTLVPMM---A-SPVETGIGCLMIATSVPVYMVFIAWRNKP  455 (472)
Q Consensus       415 ~~l~li~~~~~---~-~~~~~~i~~~v~~lgl~iy~~~~~~~~~~  455 (472)
                      .|+++++...+   . .+...+..........+.|.+++++++|+
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (444)
T 3gia_A          382 VVLGVFLLLLYYQWITNRFVFYGIIATFIGVLIFEIIYRKVTKRT  426 (444)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            66554333222   2 22233344444444444555555444443

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=99.54  E-value=2.6e-14  Score=148.04  Aligned_cols=61  Identities=21%  Similarity=0.325  Sum_probs=55.8

Q ss_pred             hhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcch
Q psy7925         212 FALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSE  285 (472)
Q Consensus       212 ~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~  285 (472)
                      ...++|.|+|+....+||.|+|+|++||++..             +.+.+.++|+..+++....+|.+|+.+++
T Consensus       196 ~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~-------------~~~~~~~~y~~~~~~~~~~~~~~~l~~~~  256 (444)
T 3gia_A          196 IFFLSYMGFGVITNASEHIENPKKNVPRAIFI-------------SILIVMFVYVGVAISAIGNLPIDELIKAS  256 (444)
T ss_dssp             HGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHTTSCHHHHHHTG
T ss_pred             HHHHHHHhHHHHHHHHHHccCcccchhHHHHH-------------HHHHHHHHHHHHHHHHHhCCCHHHHhccc
Confidence            35689999999999999999999999999998             88999999999999999999999987643

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=99.53  E-value=7e-14  Score=144.61  Aligned_cols=226  Identities=11%  Similarity=0.048  Sum_probs=121.4

Q ss_pred             hhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcchHHH---
Q psy7925         212 FALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSEATF---  288 (472)
Q Consensus       212 ~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~~~l---  288 (472)
                      ..+++|.|+|+....+||.|+|+|++||++..             +.+.+.++|+..+.+....+|.+|+.++.+++   
T Consensus       199 ~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~-------------~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~  265 (445)
T 3l1l_A          199 VTLWSFIGVESASVAAGVVKNPKRNVPIATIG-------------GVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDA  265 (445)
T ss_dssp             HHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHhcCccccccHHHHH-------------HHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHH
Confidence            46788999999999999999999999999988             88999999999999999999999987766654   


Q ss_pred             HHHHhccchhHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCC---CChhhhcccCCCCCchhHHHHHHHHHHHHHhhhh
Q psy7925         289 ANRIFGPIAWTLPVFVALSTFGGVNGIILTTSRLFYAGACEGQ---MPEILTMIQVTKMTPTPAVLTIAFLSLLYLMSSN  365 (472)
Q Consensus       289 ~~~~~G~~~~ii~i~~l~s~~~~~~~~~~~~SRvl~a~a~dg~---LP~~f~kv~~k~~tP~~al~~~~~i~~ii~l~~~  365 (472)
                      .+...|++...+  ..+.    ...+...+..-..++.+|--+   -.+.+.|.=.|.+ +...-....++..++.....
T Consensus       266 ~~~~~g~~~~~~--~~~~----~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~~~-~~~~P~~a~~~~~~~~~~~~  338 (445)
T 3l1l_A          266 ARMALGDTAGAI--VSFC----AAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVN-KAGTPVAGLIIVGILMTIFQ  338 (445)
T ss_dssp             HHHHHCTTHHHH--HHHH----HHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGCCC-TTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHH--HHHH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHhcC-CCCCCHHHHHHHHHHHHHHH
Confidence            444455553221  1112    223333344444555554311   0112222221222 33333333333333333222


Q ss_pred             HHH--------HHHHHHHHHHHHHHHHHhHHHhhhhcCCCCCCCcccc-hhHHHHHHHHHHHHHhhcccccchhHHH-HH
Q psy7925         366 IFA--------LINYVGFATWLSIGVGVLCLPVLRYTQPDLPRPIKVH-LIFPAAYLIASVFVTLVPMMASPVETGI-GC  435 (472)
Q Consensus       366 ~~~--------l~~l~~~~~l~~yil~~~a~~~l~~~~~~~~~~~~~~-~~~~il~iv~~l~li~~~~~~~~~~~~i-~~  435 (472)
                      +..        +..+.........+.......-..+. + .++| +.. ...+.+..+..++..+    ..-...+. ..
T Consensus       339 ~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~-r-~~~~-~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  411 (445)
T 3l1l_A          339 LSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLL-G-HGHF-GKARPAYLAVTTIAFLYCIW----AVVGSGAKEVM  411 (445)
T ss_dssp             HSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH-H-SSSS-GGGCTTTHHHHHHHHHHHHH----HHHHSCHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-hcCc-ccccchhHHHHHHHHHHHHH----HHHHcCHHHHH
Confidence            211        11233344433444444444444444 3 2455 332 2555555555555532    22222222 22


Q ss_pred             HHHHHHHHHHHHHHHHhccCccccccccc
Q psy7925         436 LMIATSVPVYMVFIAWRNKPKVFTKSVGE  464 (472)
Q Consensus       436 ~v~~lgl~iy~~~~~~~~~~~~~~~~~~~  464 (472)
                      .....-+....+|..+++++++.++.+.+
T Consensus       412 ~~~~~~~~g~~~y~~~~~~~~~~~~~~~~  440 (445)
T 3l1l_A          412 WSFVTLMVITAMYALNYNRLHKNPYPLDA  440 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCCCSSCCCC
T ss_pred             HHHHHHHHHHHHHHHHhhhcccCcccccc
Confidence            23344444445666666666655544443

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=99.29  E-value=1.6e-11  Score=129.26  Aligned_cols=62  Identities=11%  Similarity=0.130  Sum_probs=56.5

Q ss_pred             hhhhhcccccccccccccccCCcccccchheeeecccccchhHHHHHHHHHHHHHHHHHHHHhhccChhhhhcch
Q psy7925         211 IFALINYVGFATWTFANRIFGPIAWTLPVFVALSTFGGVNGIILTTSSVLVTVVYVLTNVAFYTTLSPAEVLNSE  285 (472)
Q Consensus       211 ~~~l~~f~g~~~~~~~~e~~~~~~ktip~~i~i~~f~~~~~~~~~~s~l~v~vlY~~~~~~~~~~lp~~~l~~~~  285 (472)
                      ...+++|.|+|+....+||.|+|+|++||++..             +.+.+.++|+..+++....+|.+|+..++
T Consensus       208 ~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~-------------~~~~~~~~y~~~~~~~~~~~~~~~~~~~~  269 (511)
T 4djk_A          208 VAFILSYMGVEASATHVNEMSNPGRDYPLAMLL-------------LMVAAICLSSVGGLSIAMVIPGNEINLSA  269 (511)
T ss_dssp             HHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHHH-------------HHHHHHHHHHHHHHHHHTTSCTTSCCSSS
T ss_pred             HHHHHHHhhHHHHHHHHHhccCcccchhHHHHH-------------HHHHHHHHHHHHHHHHHeecCHhhccccc
Confidence            345789999999999999999999999999998             89999999999999999999998876554

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00