Psyllid ID: psy7942

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
Protein Sequence
MPSCLPGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQPKRDEL
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHcccccEEEccHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHcccccccEEEEEcccccccccccccccHHHHHHHHHHcccccEEEEcHHHHHHHHcccccEEEEEEEEcccccHHHHHHHHHHHHHHHHcHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHcccccEEcccHHHHHHHHHcccEEEEEEccccccHHHHHHHHHHHHcccccEEEEccHHHHHHHccccccccEEEEEccHHHHHHccccccEEEEEEEcccccEccccccccHHHHHHHHHHccccEEEEEcccccHHHHcccHccEEEEEEcccccHHHHHHHHHHHHHHHHcccEEEEccccccccccc
Coil and Loop (DISEMBL)
mpsclpgerrggrtAEDIVNWLLkktgppakeftsvdEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVddlvfvtstnadilaeysvdddTVAIFKKFdegrvnyegpasdEAALRKFLstqslplvVEFNHETAQKIFGGEIKSHLLVFFSKAaghyeshfepvQTVAKDFrekeeqdedddqpkrdel
Flexible Loop (DISEMBL)
mpsclpgerrggrtaEDIVNWLlkktgppakeftsVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAKTFNeiaskvddlVFVTSTNADilaeysvdddtVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREkeeqdedddqpkrdel
Low Complexity Region (SEG)
MPSCLPGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFrekeeqdedddqpkrdeL
Disordered region (IsUnstruct)
****************DIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPV*************************
Disordered Region (DISOPRED)
**SCLPGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDD********
Disordered Region (DISEMBL)
***********GRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDF******************
Disordered Region (DISPRO)
****LPG**RGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDED*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPSCLPGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQPKRDEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	216	2.2.26 [Sep-21-2011]
P54399	496	Protein disulfide-isomera	yes	N/A	0.796	0.346	0.441	6e-42
Q2HWU2	510	Protein disulfide-isomera	N/A	N/A	0.800	0.339	0.392	1e-32
P07237	508	Protein disulfide-isomera	yes	N/A	0.800	0.340	0.392	1e-32
P04785	509	Protein disulfide-isomera	yes	N/A	0.800	0.339	0.397	1e-32
Q5R5B6	508	Protein disulfide-isomera	yes	N/A	0.800	0.340	0.392	1e-32
P05307	510	Protein disulfide-isomera	yes	N/A	0.800	0.339	0.397	2e-32
P09102	515	Protein disulfide-isomera	yes	N/A	0.800	0.335	0.403	1e-31
P09103	509	Protein disulfide-isomera	yes	N/A	0.800	0.339	0.382	3e-31
Q8R4U2	509	Protein disulfide-isomera	yes	N/A	0.800	0.339	0.392	3e-31
P12244	508	Dolichyl-diphosphooligosa	no	N/A	0.800	0.340	0.375	8e-30

>sp|P54399|PDI_DROME Protein disulfide-isomerase OS=Drosophila melanogaster GN=Pdi PE=2 SV=1

 Score =  170 bits (431), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 86/195 (44%), Positives = 122/195 (62%), Gaps = 23/195 (11%)

Query: 6   PGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTF 65
           P E  GGR A DI+ W+ KKTGPPAK+ TSV + + F+ D+++ + G FKD  SE AKTF
Sbjct: 113 PVEYSGGRQAADIIAWVTKKTGPPAKDLTSVADAEQFLKDNEIAIIGFFKDLESEEAKTF 172

Query: 66  NEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFD 125
            ++A+ +D  VF  SS                      NAD++A+Y   D+ V +FK FD
Sbjct: 173 TKVANALDSFVFGVSS----------------------NADVIAKYEAKDNGVVLFKPFD 210

Query: 126 EGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYE 185
           + +  +EG  ++E  L+KF   QSLPL+V+FNHE+A KIFGG IKSHLL F S+  GH E
Sbjct: 211 DKKSVFEGELNEE-NLKKFAQVQSLPLIVDFNHESASKIFGGSIKSHLLFFVSREGGHIE 269

Query: 186 SHFEPVQTVAKDFRE 200
            + +P++ +AK +R+
Sbjct: 270 KYVDPLKEIAKKYRD 284

Participates in the folding of proteins containing disulfide bonds.
Drosophila melanogaster (taxid: 7227)
EC: 5EC: .EC: 3EC: .EC: 4EC: .EC: 1

>sp|Q2HWU2|PDIA1_MACFU Protein disulfide-isomerase OS=Macaca fuscata fuscata GN=P4HB PE=2 SV=1

 Score =  139 bits (351), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 77/196 (39%), Positives = 107/196 (54%), Gaps = 23/196 (11%)

Query: 6   PGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTF 65
           P E   GR A+DIVNWL K+TGP A         ++ +  S+V V G FKD  S+ AK F
Sbjct: 115 PKEYTAGREADDIVNWLKKRTGPAATTLPDGAAAESLVESSEVAVIGFFKDVESDSAKQF 174

Query: 66  NEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFD 125
            + A  +DD+ F  +S                      N+D+ ++Y +D D V +FKKFD
Sbjct: 175 LQAAEAIDDIPFGITS----------------------NSDVFSKYQLDKDGVVLFKKFD 212

Query: 126 EGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYE 185
           EGR N+EG  + E  L  F+    LPLV+EF  +TA KIFGGEIK+H+L+F  K+   Y+
Sbjct: 213 EGRNNFEGEVTKENLL-DFIKYNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYD 271

Query: 186 SHFEPVQTVAKDFREK 201
                 +T A+ F+ K
Sbjct: 272 GKLSNFKTAAESFKGK 287

This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). May be involved with other chaperones in the structural modification of the TG precursor in hormone biogenesis. Also acts a structural subunit of various enzymes such as prolyl 4-hydroxylase and microsomal triacylglycerol transfer protein MTTP.

Macaca fuscata fuscata (taxid: 9543)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P07237|PDIA1_HUMAN Protein disulfide-isomerase OS=Homo sapiens GN=P4HB PE=1 SV=3

 Score =  139 bits (351), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 77/196 (39%), Positives = 107/196 (54%), Gaps = 23/196 (11%)

Query: 6   PGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTF 65
           P E   GR A+DIVNWL K+TGP A         ++ +  S+V V G FKD  S+ AK F
Sbjct: 113 PKEYTAGREADDIVNWLKKRTGPAATTLPDGAAAESLVESSEVAVIGFFKDVESDSAKQF 172

Query: 66  NEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFD 125
            + A  +DD+ F  +S                      N+D+ ++Y +D D V +FKKFD
Sbjct: 173 LQAAEAIDDIPFGITS----------------------NSDVFSKYQLDKDGVVLFKKFD 210

Query: 126 EGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYE 185
           EGR N+EG  + E  L  F+    LPLV+EF  +TA KIFGGEIK+H+L+F  K+   Y+
Sbjct: 211 EGRNNFEGEVTKENLL-DFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYD 269

Query: 186 SHFEPVQTVAKDFREK 201
                 +T A+ F+ K
Sbjct: 270 GKLSNFKTAAESFKGK 285

This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). May be involved with other chaperones in the structural modification of the TG precursor in hormone biogenesis. Also acts a structural subunit of various enzymes such as prolyl 4-hydroxylase and microsomal triacylglycerol transfer protein MTTP.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P04785|PDIA1_RAT Protein disulfide-isomerase OS=Rattus norvegicus GN=P4hb PE=1 SV=2

 Score =  139 bits (351), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 78/196 (39%), Positives = 107/196 (54%), Gaps = 23/196 (11%)

Query: 6   PGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTF 65
           P E   GR A+DIVNWL K+TGP A   +     ++ +  S+V V G FKDA S+ AK F
Sbjct: 115 PKEYTAGREADDIVNWLKKRTGPAATTLSDTAAAESLVDSSEVTVIGFFKDAGSDSAKQF 174

Query: 66  NEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFD 125
              A  VDD+ F  +S                      N+D+ ++Y +D D V +FKKFD
Sbjct: 175 LLAAEAVDDIPFGITS----------------------NSDVFSKYQLDKDGVVLFKKFD 212

Query: 126 EGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYE 185
           EGR N+EG  + E  L  F+    LPLV+EF  +TA KIFGGEIK+H+L+F  K+   Y+
Sbjct: 213 EGRNNFEGEITKEKLL-DFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYD 271

Query: 186 SHFEPVQTVAKDFREK 201
                 +  A+ F+ K
Sbjct: 272 GKLSNFKKAAEGFKGK 287

This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). May be involved with other chaperones in the structural modification of the TG precursor in hormone biogenesis. Also acts a structural subunit of various enzymes such as prolyl 4-hydroxylase and microsomal triacylglycerol transfer protein MTTP.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q5R5B6|PDIA1_PONAB Protein disulfide-isomerase OS=Pongo abelii GN=P4HB PE=2 SV=1

 Score =  139 bits (350), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 77/196 (39%), Positives = 107/196 (54%), Gaps = 23/196 (11%)

Query: 6   PGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTF 65
           P E   GR A+DIVNWL K+TGP A         ++ +  S+V V G FKD  S+ AK F
Sbjct: 113 PKEYTAGREADDIVNWLKKRTGPAATILPDGAAAESLVESSEVAVVGFFKDVESDSAKQF 172

Query: 66  NEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFD 125
            + A  +DD+ F  +S                      N+D+ ++Y +D D V +FKKFD
Sbjct: 173 LQAAEAIDDIPFGITS----------------------NSDVFSKYQLDKDGVVLFKKFD 210

Query: 126 EGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYE 185
           EGR N+EG  + E  L  F+    LPLV+EF  +TA KIFGGEIK+H+L+F  K+   Y+
Sbjct: 211 EGRNNFEGEVTKENLL-DFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYD 269

Query: 186 SHFEPVQTVAKDFREK 201
                 +T A+ F+ K
Sbjct: 270 GKLSNFKTAAESFKGK 285

This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). May be involved with other chaperones in the structural modification of the TG precursor in hormone biogenesis. Also acts a structural subunit of various enzymes such as prolyl 4-hydroxylase and microsomal triacylglycerol transfer protein MTTP.

Pongo abelii (taxid: 9601)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P05307|PDIA1_BOVIN Protein disulfide-isomerase OS=Bos taurus GN=P4HB PE=1 SV=1

 Score =  139 bits (349), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 78/196 (39%), Positives = 110/196 (56%), Gaps = 23/196 (11%)

Query: 6   PGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTF 65
           P E   GR A+DIVNWL K+TGP A   +     +A +  S+V V G FKD  S+ AK F
Sbjct: 115 PKEYTAGREADDIVNWLKKRTGPAASTLSDGAAAEALVESSEVAVIGFFKDMESDSAKQF 174

Query: 66  NEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFD 125
             +A++V                     +DD+ F  ++N+D+ ++Y +D D V +FKKFD
Sbjct: 175 F-LAAEV---------------------IDDIPFGITSNSDVFSKYQLDKDGVVLFKKFD 212

Query: 126 EGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYE 185
           EGR N+EG  + E  L  F+    LPLV+EF  +TA KIFGGEIK+H+L+F  K+   YE
Sbjct: 213 EGRNNFEGEVTKEKLL-DFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYE 271

Query: 186 SHFEPVQTVAKDFREK 201
                 +  A+ F+ K
Sbjct: 272 GKLSNFKKAAESFKGK 287

This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). May be involved with other chaperones in the structural modification of the TG precursor in hormone biogenesis. Also acts a structural subunit of various enzymes such as prolyl 4-hydroxylase and microsomal triacylglycerol transfer protein MTTP.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P09102|PDIA1_CHICK Protein disulfide-isomerase OS=Gallus gallus GN=P4HB PE=1 SV=3

 Score =  136 bits (342), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/196 (40%), Positives = 109/196 (55%), Gaps = 23/196 (11%)

Query: 6   PGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTF 65
           P E   GR A+DIV+WL K+TGP A   T     +  +  S+VVV G FKD +S+ AK F
Sbjct: 118 PREYTAGREADDIVSWLKKRTGPAATTLTDAAAAETLVDSSEVVVIGFFKDVTSDAAKEF 177

Query: 66  NEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFD 125
              A  VDD+ F  SS                      +AD+ ++Y +  D V +FKKFD
Sbjct: 178 LLAAESVDDIPFGISS----------------------SADVFSKYQLSQDGVVLFKKFD 215

Query: 126 EGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYE 185
           EGR N+EG  + +  L  F+ +  LPLV+EF  +TA KIFGGEIK+H+L+F  K+   YE
Sbjct: 216 EGRNNFEGDLTKDNLLN-FIKSNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYE 274

Query: 186 SHFEPVQTVAKDFREK 201
              +  +T A +F+ K
Sbjct: 275 GKLDNFKTAAGNFKGK 290

This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). Also acts a structural subunit of various enzymes such as prolyl 4-hydroxylase.

Gallus gallus (taxid: 9031)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P09103|PDIA1_MOUSE Protein disulfide-isomerase OS=Mus musculus GN=P4hb PE=1 SV=2

 Score =  135 bits (339), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/196 (38%), Positives = 105/196 (53%), Gaps = 23/196 (11%)

Query: 6   PGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTF 65
           P E   GR A+DIVNWL K+TGP A   +     ++ +  S+V V G FKD  S+ AK F
Sbjct: 115 PKEYTAGREADDIVNWLKKRTGPAATTLSDTAAAESLVDSSEVTVIGFFKDVESDSAKQF 174

Query: 66  NEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFD 125
              A  +DD+ F  +S                      N+ + ++Y +D D V +FKKFD
Sbjct: 175 LLAAEAIDDIPFGITS----------------------NSGVFSKYQLDKDGVVLFKKFD 212

Query: 126 EGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYE 185
           EGR N+EG  + E  L  F+    LPLV+EF  +TA KIFGGEIK+H+L+F  K+   Y+
Sbjct: 213 EGRNNFEGEITKEKLL-DFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYD 271

Query: 186 SHFEPVQTVAKDFREK 201
                 +  A+ F+ K
Sbjct: 272 GKLSSFKRAAEGFKGK 287

This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). May be involved with other chaperones in the structural modification of the TG precursor in hormone biogenesis. Also acts a structural subunit of various enzymes such as prolyl 4-hydroxylase and microsomal triacylglycerol transfer protein MTTP.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|Q8R4U2|PDIA1_CRIGR Protein disulfide-isomerase OS=Cricetulus griseus GN=P4HB PE=2 SV=1

 Score =  135 bits (339), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 77/196 (39%), Positives = 104/196 (53%), Gaps = 23/196 (11%)

Query: 6   PGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTF 65
           P E   GR A+DIVNWL K+TGP A   +     +  I  S+V V G FKD  S+ AK F
Sbjct: 115 PKEYTAGREADDIVNWLKKRTGPAATTLSDTAAAETLIDSSEVAVIGFFKDVESDSAKQF 174

Query: 66  NEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFD 125
              A  VDD+ F  +S                      N+ + ++Y +D D V +FKKFD
Sbjct: 175 LLAAEAVDDIPFGITS----------------------NSGVFSKYQLDKDGVVLFKKFD 212

Query: 126 EGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYE 185
           EGR N+EG  + E  L  F+    LPLV+EF  +TA KIFGGEIK+H+L+F  K+   Y+
Sbjct: 213 EGRNNFEGEVTKEKLL-DFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYD 271

Query: 186 SHFEPVQTVAKDFREK 201
                 +  A+ F+ K
Sbjct: 272 GKLGNFKKAAEGFKGK 287

This multifunctional protein catalyzes the formation, breakage and rearrangement of disulfide bonds. At the cell surface, seems to act as a reductase that cleaves disulfide bonds of proteins attached to the cell. May therefore cause structural modifications of exofacial proteins. Inside the cell, seems to form/rearrange disulfide bonds of nascent proteins. At high concentrations, functions as a chaperone that inhibits aggregation of misfolded proteins. At low concentrations, facilitates aggregation (anti-chaperone activity). May be involved with other chaperones in the structural modification of the TG precursor in hormone biogenesis. Also acts a structural subunit of various enzymes such as prolyl 4-hydroxylase and microsomal triacylglycerol transfer protein MTTP.

Cricetulus griseus (taxid: 10029)

EC: 5

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 1

>sp|P12244|GSBP_CHICK Dolichyl-diphosphooligosaccharide--protein glycotransferase OS=Gallus gallus PE=2 SV=2

 Score =  130 bits (326), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 74/197 (37%), Positives = 107/197 (54%), Gaps = 24/197 (12%)

Query: 6   PGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKV-VVAGLFKDASSELAKT 64
           P E   GR A+DIVNWL K+TGP A   +     ++ +  S++ V+ G FKD  S+ A+ 
Sbjct: 112 PKEYTAGREADDIVNWLKKRTGPAATTLSDTAAAESLVDSSEITVIIGFFKDPGSDSARQ 171

Query: 65  FNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKF 124
           F   A  VDD+ F  +S                      N+D+ ++Y +D D V +FKKF
Sbjct: 172 FLLAADAVDDVPFGINS----------------------NSDVYSKYQMDKDAVVLFKKF 209

Query: 125 DEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHY 184
            EGR N+EG  + E  L  F+   +LPLV+EF  +TA KIFGGEIK+H+L+F  K+   Y
Sbjct: 210 AEGRNNFEGEITKEKLL-DFIKHNNLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDY 268

Query: 185 ESHFEPVQTVAKDFREK 201
           +     ++  A  F+ K
Sbjct: 269 DGKLSNLKKAADGFKGK 285

Transfers the polysaccharide side-chains of glycoproteins to an asparagine residue of Asn-X-Ser/Thr sites in nascent proteins.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
307095212	294	protein disulfide isomerase [Triatoma ma	0.796	0.585	0.5	4e-45
332030563	496	Protein disulfide-isomerase [Acromyrmex	0.768	0.334	0.486	2e-42
195378894	493	GJ11469 [Drosophila virilis] gi|19415537	0.796	0.348	0.466	4e-42
156537243	496	PREDICTED: protein disulfide-isomerase-l	0.791	0.344	0.479	5e-42
195020104	493	GH16892 [Drosophila grimshawi] gi|193898	0.810	0.354	0.469	7e-42
125978277	493	GA20009 [Drosophila pseudoobscura pseudo	0.810	0.354	0.454	2e-41
225382096	503	protein disulfide isomerase [Litopenaeus	0.768	0.330	0.492	2e-41
195441351	497	GK20490 [Drosophila willistoni] gi|19416	0.796	0.346	0.456	3e-41
195162764	493	GL25779 [Drosophila persimilis] gi|19410	0.810	0.354	0.454	4e-41
194751557	496	GF10739 [Drosophila ananassae] gi|190625	0.810	0.352	0.454	1e-40

>gi|307095212|gb|ADN29912.1| protein disulfide isomerase [Triatoma matogrossensis]

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 97/194 (50%), Positives = 127/194 (65%), Gaps = 22/194 (11%)

Query: 6   PGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTF 65
           P E  G R A+DIVNWLLKKTG PAK  + +DE+K+FI +S VVV G FKD  SE  K F
Sbjct: 113 PVEYTGDRRADDIVNWLLKKTGQPAKILSKIDEVKSFIDESPVVVIGYFKDPESESCKRF 172

Query: 66  NEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFD 125
            ++AS V                      DD  F   +  ++  E++VD+D V ++KKFD
Sbjct: 173 LDVASTV----------------------DDHPFGIVSEQELFTEFNVDEDKVILYKKFD 210

Query: 126 EGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYE 185
           +G+  + G   D   L KF++++SLPLVVEFNHETAQKIFGG+IKSHLL+FFSK AGH+E
Sbjct: 211 DGKSIFTGSLEDPNELTKFVASESLPLVVEFNHETAQKIFGGDIKSHLLLFFSKKAGHFE 270

Query: 186 SHFEPVQTVAKDFR 199
            H EP++ VAK+F+
Sbjct: 271 EHLEPLKPVAKEFK 284

Source: Triatoma matogrossensis

Species: Triatoma matogrossensis

Genus: Triatoma

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030563|gb|EGI70251.1| Protein disulfide-isomerase [Acromyrmex echinatior]

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 92/189 (48%), Positives = 125/189 (66%), Gaps = 23/189 (12%)

Query: 11  GGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIAS 70
           GGR A++IVNWLLKKTGPPAK+ T+VDE KAFI   KV + G FKD +S++AK F E+ S
Sbjct: 117 GGRQADEIVNWLLKKTGPPAKDLTTVDEAKAFIEAHKVAIVGFFKDVTSDVAKVFLEVGS 176

Query: 71  KVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVN 130
            VDD VF                      +TS + ++ +EY ++D  + +FKKFDEG+  
Sbjct: 177 IVDDHVFG---------------------ITSAD-EVFSEYGIEDGKIVLFKKFDEGKAV 214

Query: 131 YEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEP 190
           ++G  +   A++ F+S  SLPL+VEFN +TAQKIF G+IKSHLL+F SK AGH+E + E 
Sbjct: 215 FDGEYT-TTAVQNFISVFSLPLIVEFNQDTAQKIFSGDIKSHLLLFLSKEAGHFEKYIEG 273

Query: 191 VQTVAKDFR 199
           +Q  AK +R
Sbjct: 274 IQEPAKKYR 282

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195378894|ref|XP_002048216.1| GJ11469 [Drosophila virilis] gi|194155374|gb|EDW70558.1| GJ11469 [Drosophila virilis]

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 91/195 (46%), Positives = 123/195 (63%), Gaps = 23/195 (11%)

Query: 6   PGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTF 65
           P E  GGR A DI+ W+ KKTGPPAK+ TSV E + F+ D+++ + G FKD  SE AK F
Sbjct: 109 PVEYNGGRQAADIIAWVTKKTGPPAKDLTSVAEAEQFLKDNEIAIIGFFKDVESEEAKIF 168

Query: 66  NEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFD 125
            + A+ +                      D  VF  S+NAD++A+Y   D+ V +FK FD
Sbjct: 169 TKAANAL----------------------DSFVFGISSNADVIAKYESKDNGVVLFKPFD 206

Query: 126 EGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYE 185
           E +  +EG  S+E+ L+KF   QSLPL+V+FNHE+A KIFGG IKSHLL F SK AGH E
Sbjct: 207 EKKSVFEGELSEES-LKKFAQVQSLPLIVDFNHESASKIFGGSIKSHLLFFVSKEAGHIE 265

Query: 186 SHFEPVQTVAKDFRE 200
           +H +P++ +AK +RE
Sbjct: 266 AHVDPLKEIAKKYRE 280

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156537243|ref|XP_001605359.1| PREDICTED: protein disulfide-isomerase-like [Nasonia vitripennis]

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 93/194 (47%), Positives = 125/194 (64%), Gaps = 23/194 (11%)

Query: 8   ERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNE 67
           E  GGR A+DI+NW+LKKTGP AK+ ++VDE KAFI  + V V G FKDA SE AK F E
Sbjct: 114 EYTGGRKADDIINWVLKKTGPIAKDLSTVDEAKAFIEANNVAVVGFFKDAESENAKVFLE 173

Query: 68  IASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEG 127
           +                      A+ +DD VF  S+NAD+ AEY V+D  V +FKKFD+ 
Sbjct: 174 V----------------------ANSIDDTVFAISSNADVFAEYGVEDGKVVLFKKFDDN 211

Query: 128 RVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESH 187
           +  +     + A L+KF+  +SLPL+VEFN ETA+ IF G+IKSHLLVF S+ AGH++ +
Sbjct: 212 KAEF-ADEHNVANLKKFIQVESLPLIVEFNQETARTIFNGDIKSHLLVFLSQEAGHFDKY 270

Query: 188 FEPVQTVAKDFREK 201
            + ++T AK+FR K
Sbjct: 271 ADDLKTPAKEFRGK 284

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195020104|ref|XP_001985122.1| GH16892 [Drosophila grimshawi] gi|193898604|gb|EDV97470.1| GH16892 [Drosophila grimshawi]

 Score =  176 bits (445), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 93/198 (46%), Positives = 124/198 (62%), Gaps = 23/198 (11%)

Query: 3   SCLPGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELA 62
           S  P E  GGR A DIV W+ KKTGPPAK+ TSV E + F+ D+++ + G FKDA SE A
Sbjct: 106 SGAPVEYNGGRQAADIVAWVTKKTGPPAKDLTSVAEAEQFVKDNEIAIIGFFKDAESEEA 165

Query: 63  KTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFK 122
           KTF + A+ +D  +F  SS                      NAD++A+Y   D+ V +FK
Sbjct: 166 KTFTKAANALDSFIFGISS----------------------NADVIAKYEAKDNGVILFK 203

Query: 123 KFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAG 182
            FDE +  +EG  ++E  L+KF   QSLPL+V+FNHE+A KIFGG IKSHLL F SK AG
Sbjct: 204 PFDEKKSVFEGELTEE-NLKKFAQVQSLPLIVDFNHESAAKIFGGSIKSHLLFFVSKEAG 262

Query: 183 HYESHFEPVQTVAKDFRE 200
           H E++ +P++ +AK  RE
Sbjct: 263 HIETYVDPLKEIAKKHRE 280

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125978277|ref|XP_001353171.1| GA20009 [Drosophila pseudoobscura pseudoobscura] gi|54641924|gb|EAL30673.1| GA20009 [Drosophila pseudoobscura pseudoobscura]

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 90/198 (45%), Positives = 125/198 (63%), Gaps = 23/198 (11%)

Query: 3   SCLPGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELA 62
           S  P E  GGR A DI++W+ KKTGPPAK+ TSV + + F+ D+++ + G FKD  SE A
Sbjct: 107 SGAPVEYSGGRQAADIISWVTKKTGPPAKDLTSVADAEQFLKDNEIAIIGFFKDTDSEEA 166

Query: 63  KTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFK 122
           KTF + A+ +                      D  VF  S+NADI+A+Y   D+ V +FK
Sbjct: 167 KTFTKAANAL----------------------DSFVFGVSSNADIIAKYEAKDNGVILFK 204

Query: 123 KFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAG 182
            FD+ +  +EG  ++E  L+KF   QSLPL+V+FNHE+A KIFGG IKSHLL F SK AG
Sbjct: 205 PFDDKKSVFEGELTEET-LKKFAQVQSLPLIVDFNHESASKIFGGSIKSHLLFFVSKEAG 263

Query: 183 HYESHFEPVQTVAKDFRE 200
           H E+H +P++ +AK +R+
Sbjct: 264 HIEAHVDPLKEIAKKYRD 281

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225382096|gb|ACN89260.1| protein disulfide isomerase [Litopenaeus vannamei]

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 93/189 (49%), Positives = 115/189 (60%), Gaps = 23/189 (12%)

Query: 11  GGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIAS 70
           GGR A+DIVNWLLKKTGPPAK   +VD+ KAFIA+  VV+ G FKD  S+ AK F   AS
Sbjct: 121 GGRQADDIVNWLLKKTGPPAKPLATVDDAKAFIAEKPVVIIGFFKDQQSDAAKQFLAAAS 180

Query: 71  KVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVN 130
             DD  F  +SE A                      +  EY +  D + +FK FDEG+  
Sbjct: 181 ATDDHPFGITSEEA----------------------LFTEYGLSADGIVLFKDFDEGKNV 218

Query: 131 YEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEP 190
           YEG  + E  + KF++  SLPLVV+FNHETA KIFGG+IKSHLL+F SK AGHY++H   
Sbjct: 219 YEGEVT-EDGVSKFVAANSLPLVVDFNHETASKIFGGDIKSHLLIFLSKEAGHYDTHLSA 277

Query: 191 VQTVAKDFR 199
               AK F+
Sbjct: 278 ATAAAKGFK 286

Source: Litopenaeus vannamei

Species: Litopenaeus vannamei

Genus: Litopenaeus

Family: Penaeidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195441351|ref|XP_002068475.1| GK20490 [Drosophila willistoni] gi|194164560|gb|EDW79461.1| GK20490 [Drosophila willistoni]

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 89/195 (45%), Positives = 123/195 (63%), Gaps = 23/195 (11%)

Query: 6   PGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTF 65
           P E  GGR A DI+ W+ KKTGPPAK+ TSV E + F+ D+++ + G FKD  SE AKTF
Sbjct: 111 PVEYSGGRQAADIIAWVTKKTGPPAKDLTSVAEAEQFLKDNEIAIIGFFKDTESEEAKTF 170

Query: 66  NEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFD 125
            + A+ +                      D  VF  S+NAD+LA+Y   D+ V +FK FD
Sbjct: 171 TKAANAL----------------------DSFVFGVSSNADVLAKYEAKDNAVILFKPFD 208

Query: 126 EGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYE 185
           + +  +EG  ++E  ++KF   QSLPL+V+FNHE+A KIFGG IKSHLL F SK AGH E
Sbjct: 209 DKKSVFEGELTEEN-VKKFAQVQSLPLIVDFNHESAAKIFGGSIKSHLLFFVSKEAGHIE 267

Query: 186 SHFEPVQTVAKDFRE 200
           +H +P++ +AK +R+
Sbjct: 268 THVDPLKEIAKKYRD 282

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195162764|ref|XP_002022224.1| GL25779 [Drosophila persimilis] gi|194104185|gb|EDW26228.1| GL25779 [Drosophila persimilis]

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 90/198 (45%), Positives = 124/198 (62%), Gaps = 23/198 (11%)

Query: 3   SCLPGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELA 62
           S  P E  GGR A DI++W+ KKTGPPAK+ TSV + + F+ D+++ + G FKD  SE A
Sbjct: 107 SGAPVEYSGGRQAADIISWVTKKTGPPAKDLTSVADAEQFLKDNEIAIIGFFKDTDSEEA 166

Query: 63  KTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFK 122
           KTF + A+ +                      D  VF  S+NADI+A+Y   D+ V +FK
Sbjct: 167 KTFTKAANAL----------------------DSFVFGVSSNADIIAKYEAKDNGVILFK 204

Query: 123 KFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAG 182
            FD  +  +EG  ++E  L+KF   QSLPL+V+FNHE+A KIFGG IKSHLL F SK AG
Sbjct: 205 PFDGKKSVFEGELTEET-LKKFAQVQSLPLIVDFNHESASKIFGGSIKSHLLFFVSKEAG 263

Query: 183 HYESHFEPVQTVAKDFRE 200
           H E+H +P++ +AK +R+
Sbjct: 264 HIEAHVDPLKEIAKKYRD 281

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194751557|ref|XP_001958092.1| GF10739 [Drosophila ananassae] gi|190625374|gb|EDV40898.1| GF10739 [Drosophila ananassae]

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 90/198 (45%), Positives = 124/198 (62%), Gaps = 23/198 (11%)

Query: 3   SCLPGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELA 62
           S  P E  GGR A DI+ W+ KKTGPPAK+ TSV + + F+ D+++ + G FKDA SE A
Sbjct: 110 SGAPVEYSGGRQAADIIAWVTKKTGPPAKDLTSVADAEQFLKDNEIAIIGFFKDAESEEA 169

Query: 63  KTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFK 122
           KTF + A+ +D  VF  SS                      NA+++A+Y   D+ V +FK
Sbjct: 170 KTFTKAANGLDSFVFGVSS----------------------NAEVIAKYEAKDNGVILFK 207

Query: 123 KFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAG 182
            FD+ +  +EG  S+E  L+KF   QSLPL+V+FNHE+A KIFGG IKSHLL F SK AG
Sbjct: 208 PFDDKKSVFEGELSEE-NLKKFAQVQSLPLIVDFNHESASKIFGGSIKSHLLFFVSKEAG 266

Query: 183 HYESHFEPVQTVAKDFRE 200
           H E + +P++ +AK +R+
Sbjct: 267 HIEKYVDPLKEIAKQYRD 284

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
FB|FBgn0014002	496	Pdi "Protein disulfide isomera	0.601	0.262	0.473	8.2e-31
UNIPROTKB|P07237	508	P4HB "Protein disulfide-isomer	0.782	0.332	0.378	1e-24
UNIPROTKB|F1N9H3	393	P4HB "Protein disulfide-isomer	0.731	0.402	0.390	1.2e-24
UNIPROTKB|P09102	515	P4HB "Protein disulfide-isomer	0.777	0.326	0.379	1.8e-24
UNIPROTKB|A6H7J6	510	P4HB "Prolyl 4-hydroxylase, be	0.782	0.331	0.378	2.9e-24
UNIPROTKB|P05307	510	P4HB "Protein disulfide-isomer	0.782	0.331	0.378	3.7e-24
UNIPROTKB|H7BZ94	464	P4HB "Protein disulfide-isomer	0.555	0.258	0.438	5.1e-24
RGD|3244	509	P4hb "prolyl 4-hydroxylase, be	0.782	0.332	0.378	1.3e-23
UNIPROTKB|F1PL97	510	P4HB "Uncharacterized protein"	0.555	0.235	0.438	1e-22
MGI|MGI:97464	509	P4hb "prolyl 4-hydroxylase, be	0.782	0.332	0.361	2.1e-22

FB|FBgn0014002 Pdi "Protein disulfide isomerase" [Drosophila melanogaster (taxid:7227)]

 Score = 319 (117.4 bits), Expect = 8.2e-31, Sum P(2) = 8.2e-31
 Identities = 63/133 (47%), Positives = 90/133 (67%)

Query:    66 NEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFD 125
             NEIA  +     D  SE AKTF ++A+ +D  VF  S+NAD++A+Y   D+ V +FK FD
Sbjct:   153 NEIA--IIGFFKDLESEEAKTFTKVANALDSFVFGVSSNADVIAKYEAKDNGVVLFKPFD 210

Query:   126 EGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYE 185
             + +  +EG  ++E  L+KF   QSLPL+V+FNHE+A KIFGG IKSHLL F S+  GH E
Sbjct:   211 DKKSVFEGELNEEN-LKKFAQVQSLPLIVDFNHESASKIFGGSIKSHLLFFVSREGGHIE 269

Query:   186 SHFEPVQTVAKDF 198
              + +P++ +AK +
Sbjct:   270 KYVDPLKEIAKKY 282

GO:0006457 "protein folding" evidence=ISS;NAS

GO:0003756 "protein disulfide isomerase activity" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005788 "endoplasmic reticulum lumen" evidence=NAS

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005791 "rough endoplasmic reticulum" evidence=IDA

GO:0005615 "extracellular space" evidence=IDA

GO:0060187 "cell pole" evidence=IDA

GO:0070732 "spindle envelope" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0045169 "fusome" evidence=IDA

UNIPROTKB|P07237 P4HB "Protein disulfide-isomerase" [Homo sapiens (taxid:9606)]

 Score = 287 (106.1 bits), Expect = 1.0e-24, P = 1.0e-24
 Identities = 67/177 (37%), Positives = 100/177 (56%)

Query:    26 TGPPAKEFTS---VDEIKAFIADSKVVVAGLFKD-ASSELAKTFNEIASKVDDLVFDASS 81
             T  P KE+T+    D+I  ++       A    D A++E     +E+A  V     D  S
Sbjct:   110 TASP-KEYTAGREADDIVNWLKKRTGPAATTLPDGAAAESLVESSEVA--VIGFFKDVES 166

Query:    82 ELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAAL 141
             + AK F + A  +DD+ F  ++N+D+ ++Y +D D V +FKKFDEGR N+EG  + E  L
Sbjct:   167 DSAKQFLQAAEAIDDIPFGITSNSDVFSKYQLDKDGVVLFKKFDEGRNNFEGEVTKENLL 226

Query:   142 RKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDF 198
               F+    LPLV+EF  +TA KIFGGEIK+H+L+F  K+   Y+      +T A+ F
Sbjct:   227 -DFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESF 282

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0003756 "protein disulfide isomerase activity" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0009986 "cell surface" evidence=IDA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IDA

GO:0005576 "extracellular region" evidence=NAS

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=IDA

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=IDA

GO:0005788 "endoplasmic reticulum lumen" evidence=TAS

GO:0006629 "lipid metabolic process" evidence=TAS

GO:0030198 "extracellular matrix organization" evidence=TAS

GO:0042157 "lipoprotein metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006457 "protein folding" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|F1N9H3 P4HB "Protein disulfide-isomerase" [Gallus gallus (taxid:9031)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 64/164 (39%), Positives = 99/164 (60%)

Query:    37 DEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVF--DASSELAKTFNEIASKV 94
             D+I +++       A    DA++  A+T  + +S+V  + F  D +S+ AK F   A  V
Sbjct:     6 DDIVSWLKKRTGPAATTLTDAAA--AETLVD-SSEVVVIGFFKDVTSDAAKEFLLAAESV 62

Query:    95 DDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVV 154
             DD+ F  S++AD+ ++Y +  D V +FKKFDEGR N+EG  + +  L  F+ +  LPLV+
Sbjct:    63 DDIPFGISSSADVFSKYQLSQDGVVLFKKFDEGRNNFEGDLTKDNLLN-FIKSNQLPLVI 121

Query:   155 EFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDF 198
             EF  +TA KIFGGEIK+H+L+F  K+   YE   +  +T A +F
Sbjct:   122 EFTEQTAPKIFGGEIKTHILLFLPKSVSDYEGKLDNFKTAAGNF 165

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=IEA

UNIPROTKB|P09102 P4HB "Protein disulfide-isomerase" [Gallus gallus (taxid:9031)]

 Score = 285 (105.4 bits), Expect = 1.8e-24, P = 1.8e-24
 Identities = 68/179 (37%), Positives = 106/179 (59%)

Query:    25 KTGPPAKEFTS---VDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVF--DA 79
             K  P  +E+T+    D+I +++       A    DA++  A+T  + +S+V  + F  D 
Sbjct:   115 KAAP--REYTAGREADDIVSWLKKRTGPAATTLTDAAA--AETLVD-SSEVVVIGFFKDV 169

Query:    80 SSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEA 139
             +S+ AK F   A  VDD+ F  S++AD+ ++Y +  D V +FKKFDEGR N+EG  + + 
Sbjct:   170 TSDAAKEFLLAAESVDDIPFGISSSADVFSKYQLSQDGVVLFKKFDEGRNNFEGDLTKDN 229

Query:   140 ALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDF 198
              L  F+ +  LPLV+EF  +TA KIFGGEIK+H+L+F  K+   YE   +  +T A +F
Sbjct:   230 LLN-FIKSNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYEGKLDNFKTAAGNF 287

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0003756 "protein disulfide isomerase activity" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=IEA

UNIPROTKB|A6H7J6 P4HB "Prolyl 4-hydroxylase, beta subunit" [Bos taurus (taxid:9913)]

 Score = 283 (104.7 bits), Expect = 2.9e-24, P = 2.9e-24
 Identities = 67/177 (37%), Positives = 98/177 (55%)

Query:    26 TGPPAKEFTS---VDEIKAFIADSKVVVAGLFKD-ASSELAKTFNEIASKVDDLVFDASS 81
             T  P KE+T+    D+I  ++       A    D A++E     +E+A  V     D  S
Sbjct:   112 TASP-KEYTAGREADDIVNWLKKRTGPAASTLSDGAAAEALVESSEVA--VIGFFKDMES 168

Query:    82 ELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAAL 141
             + AK F   A  +DD+ F  ++N+D+ ++Y +D D V +FKKFDEGR N+EG  + E  L
Sbjct:   169 DSAKQFLLAAEAIDDIPFGITSNSDVFSKYQLDKDGVVLFKKFDEGRNNFEGEVTKEKLL 228

Query:   142 RKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDF 198
               F+    LPLV+EF  +TA KIFGGEIK+H+L+F  K+   YE      +  A+ F
Sbjct:   229 -DFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYEGKLSNFKKAAESF 284

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

UNIPROTKB|P05307 P4HB "Protein disulfide-isomerase" [Bos taurus (taxid:9913)]

 Score = 282 (104.3 bits), Expect = 3.7e-24, P = 3.7e-24
 Identities = 67/177 (37%), Positives = 98/177 (55%)

Query:    26 TGPPAKEFTS---VDEIKAFIADSKVVVAGLFKD-ASSELAKTFNEIASKVDDLVFDASS 81
             T  P KE+T+    D+I  ++       A    D A++E     +E+A  V     D  S
Sbjct:   112 TASP-KEYTAGREADDIVNWLKKRTGPAASTLSDGAAAEALVESSEVA--VIGFFKDMES 168

Query:    82 ELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAAL 141
             + AK F   A  +DD+ F  ++N+D+ ++Y +D D V +FKKFDEGR N+EG  + E  L
Sbjct:   169 DSAKQFFLAAEVIDDIPFGITSNSDVFSKYQLDKDGVVLFKKFDEGRNNFEGEVTKEKLL 228

Query:   142 RKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDF 198
               F+    LPLV+EF  +TA KIFGGEIK+H+L+F  K+   YE      +  A+ F
Sbjct:   229 -DFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYEGKLSNFKKAAESF 284

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISS

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0003756 "protein disulfide isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

UNIPROTKB|H7BZ94 P4HB "Protein disulfide-isomerase" [Homo sapiens (taxid:9606)]

 Score = 279 (103.3 bits), Expect = 5.1e-24, P = 5.1e-24
 Identities = 53/121 (43%), Positives = 77/121 (63%)

Query:    78 DASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASD 137
             D  S+ AK F + A  +DD+ F  ++N+D+ ++Y +D D V +FKKFDEGR N+EG  + 
Sbjct:   119 DVESDSAKQFLQAAEAIDDIPFGITSNSDVFSKYQLDKDGVVLFKKFDEGRNNFEGEVTK 178

Query:   138 EAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKD 197
             E  L  F+    LPLV+EF  +TA KIFGGEIK+H+L+F  K+   Y+      +T A+ 
Sbjct:   179 ENLL-DFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAES 237

Query:   198 F 198
             F
Sbjct:   238 F 238

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

RGD|3244 P4hb "prolyl 4-hydroxylase, beta polypeptide" [Rattus norvegicus (taxid:10116)]

 Score = 277 (102.6 bits), Expect = 1.3e-23, P = 1.3e-23
 Identities = 67/177 (37%), Positives = 98/177 (55%)

Query:    26 TGPPAKEFTS---VDEIKAFIADSKVVVAGLFKD-ASSELAKTFNEIASKVDDLVFDASS 81
             T  P KE+T+    D+I  ++       A    D A++E     +E+   V     DA S
Sbjct:   112 TASP-KEYTAGREADDIVNWLKKRTGPAATTLSDTAAAESLVDSSEVT--VIGFFKDAGS 168

Query:    82 ELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAAL 141
             + AK F   A  VDD+ F  ++N+D+ ++Y +D D V +FKKFDEGR N+EG  + E  L
Sbjct:   169 DSAKQFLLAAEAVDDIPFGITSNSDVFSKYQLDKDGVVLFKKFDEGRNNFEGEITKEKLL 228

Query:   142 RKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDF 198
               F+    LPLV+EF  +TA KIFGGEIK+H+L+F  K+   Y+      +  A+ F
Sbjct:   229 -DFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKKAAEGF 284

GO:0003756 "protein disulfide isomerase activity" evidence=IMP

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=IEA;ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005788 "endoplasmic reticulum lumen" evidence=IEA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006457 "protein folding" evidence=IMP

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009986 "cell surface" evidence=IEA;ISO

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=IEA;ISO

GO:0042470 "melanosome" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IPI

UNIPROTKB|F1PL97 P4HB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 269 (99.8 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 53/121 (43%), Positives = 75/121 (61%)

Query:    78 DASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASD 137
             D  S+ AK F   A  +DD+ F  ++N+D+ ++Y +  D V +FKKFDEGR N+EG  S 
Sbjct:   165 DVESDFAKQFLLAAEAIDDIPFGITSNSDVFSKYQLSKDGVVLFKKFDEGRNNFEGEISK 224

Query:   138 EAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKD 197
             E  L  F+    LPLV+EF  +TA KIFGGEIK+H+L+F  K+   Y+S     +  A+ 
Sbjct:   225 EKLL-DFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDSKLSNFKKAAER 283

Query:   198 F 198
             F
Sbjct:   284 F 284

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

MGI|MGI:97464 P4hb "prolyl 4-hydroxylase, beta polypeptide" [Mus musculus (taxid:10090)]

 Score = 266 (98.7 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 64/177 (36%), Positives = 96/177 (54%)

Query:    26 TGPPAKEFTS---VDEIKAFIADSKVVVAGLFKD-ASSELAKTFNEIASKVDDLVFDASS 81
             T  P KE+T+    D+I  ++       A    D A++E     +E+   V     D  S
Sbjct:   112 TASP-KEYTAGREADDIVNWLKKRTGPAATTLSDTAAAESLVDSSEVT--VIGFFKDVES 168

Query:    82 ELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAAL 141
             + AK F   A  +DD+ F  ++N+ + ++Y +D D V +FKKFDEGR N+EG  + E  L
Sbjct:   169 DSAKQFLLAAEAIDDIPFGITSNSGVFSKYQLDKDGVVLFKKFDEGRNNFEGEITKEKLL 228

Query:   142 RKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDF 198
               F+    LPLV+EF  +TA KIFGGEIK+H+L+F  K+   Y+      +  A+ F
Sbjct:   229 -DFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSSFKRAAEGF 284

GO:0003756 "protein disulfide isomerase activity" evidence=ISO

GO:0004656 "procollagen-proline 4-dioxygenase activity" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006457 "protein folding" evidence=ISO

GO:0006662 "glycerol ether metabolic process" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009986 "cell surface" evidence=ISO

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0018401 "peptidyl-proline hydroxylation to 4-hydroxy-L-proline" evidence=ISO

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	216
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	2e-33
pfam13848	183	pfam13848, Thioredoxin_6, Thioredoxin-like domain	9e-18
cd02981	97	cd02981, PDI_b_family, Protein Disulfide Isomerase	1e-13
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	5e-12
cd03069	104	cd03069, PDI_b_ERp57, PDIb family, ERp57 subfamily	4e-04

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score =  124 bits (313), Expect = 2e-33
 Identities = 65/195 (33%), Positives = 90/195 (46%), Gaps = 25/195 (12%)

Query: 11  GGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIAS 70
           G R A+ IV ++ K++GP  KE  +V +++AF+AD  VVV G FKD  SEL  TF  +A 
Sbjct: 94  GPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKDLDSELNDTFLSVAE 153

Query: 71  KVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGR-- 128
           K+ D+ F                     F  S++    A+     D+V +FK  DE    
Sbjct: 154 KLRDVYF--------------------FFAHSSDVAAFAKLGAFPDSVVLFKPKDEDEKF 193

Query: 129 --VNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYES 186
             V+ E    D + L KF+  +SLPLV EF  ETA K F       L     ++   +E 
Sbjct: 194 SKVDGEMDT-DVSDLEKFIRAESLPLVGEFTQETAAKYFESGPLVVLYYNVDESLDPFEE 252

Query: 187 HFEPVQTVAKDFREK 201
                   AK FR K
Sbjct: 253 LRNRFLEAAKKFRGK 267

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|222416 pfam13848, Thioredoxin_6, Thioredoxin-like domain

 Score = 77.4 bits (191), Expect = 9e-18
 Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 4/126 (3%)

Query: 78  DASSELAKTFNEIASKV-DDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPAS 136
           D    L + F + A ++  D+ F  + + ++  +Y + + T+ +F+KFDE +V Y G   
Sbjct: 3   DKDDPLYEIFEKAAKELRGDVRFGVTFDKEVAKKYGIKEPTILLFRKFDEKQVTYPGEDK 62

Query: 137 -DEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVA 195
                L+KF+   SLPLV EF  E A+++F       LL+F  K +   E     V+ VA
Sbjct: 63  TTFDDLKKFIQKNSLPLVGEFTPENAEELFESGK--PLLLFIKKDSEETEKLKNRVEEVA 120

Query: 196 KDFREK 201
           K F+ K
Sbjct: 121 KKFKGK 126

Length = 183

>gnl|CDD|239279 cd02981, PDI_b_family, Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score = 63.9 bits (156), Expect = 1e-13
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 22/117 (18%)

Query: 30  AKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAKTFNE 89
            KE TS +E++ F+    VVV G FKD  SE  KTF ++A  +                 
Sbjct: 1   VKELTSKEELEKFLDKDDVVVVGFFKDEESEEYKTFEKVAESLR---------------- 44

Query: 90  IASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFLS 146
                DD  F  +++ ++  +  V   +V +FK F+E  V Y+G    E +L +F+ 
Sbjct: 45  -----DDYGFGHTSDKEVAKKLKVKPGSVVLFKPFEEEPVEYDGE-FTEESLVEFIK 95

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contains only redox-inactive TRX-like (b and b') domains. The redox inactive b domains are implicated in substrate recognition. Length = 97

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score = 63.6 bits (155), Expect = 5e-12
 Identities = 56/191 (29%), Positives = 78/191 (40%), Gaps = 34/191 (17%)

Query: 11  GGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIAS 70
           GGRTA+ IV+W+ K TGP   E  S  EIK       V   G +    SEL K F E+A 
Sbjct: 123 GGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSKDSELYKKFEEVAD 182

Query: 71  KVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVN 130
           K          E AK F +                          + + +  K +EG   
Sbjct: 183 K--------HREHAKFFVKKHEG---------------------KNKIYVLHKDEEGVEL 213

Query: 131 YEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEP 190
           + G   +E  L +F+ST+S PL  E N E  ++          LV+F      Y+ +   
Sbjct: 214 FMGKTKEE--LEEFVSTESFPLFAEINAENYRRYISSGKD---LVWFCGTTEDYDKYKSV 268

Query: 191 VQTVAKDFREK 201
           V+ VA+  REK
Sbjct: 269 VRKVARKLREK 279

Length = 477

>gnl|CDD|239367 cd03069, PDI_b_ERp57, PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 27/121 (22%)

Query: 30  AKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAKTFNE 89
           + E  +  E + F++D    V G F+D  S+L   F + A  + +               
Sbjct: 2   SVELRTEAEFEKFLSDDDASVVGFFEDEDSKLLSEFLKAADTLRESF------------- 48

Query: 90  IASKVDDLVFVTSTNADILAEYSVDDDTVAI-----FKKFDEGRVNYEGPASDEAALRKF 144
                    F  +++  +L +Y   +  V         KF++  V ++G   D + ++KF
Sbjct: 49  --------RFAHTSDKQLLEKYGYGEGVVLFRPPRLSNKFEDSSVKFDG-DLDSSKIKKF 99

Query: 145 L 145
           +
Sbjct: 100 I 100

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates. Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	216
KOG0190|consensus	493		99.95
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	99.92
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	99.85
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.8
PTZ00102	477	disulphide isomerase; Provisional	99.77
KOG0912|consensus	375		99.67
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	99.63
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	99.61
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	99.61
KOG4277|consensus	468		99.57
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	99.52
KOG0190|consensus	493		99.32
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.2
KOG0912|consensus	375		99.17
PTZ00102	477	disulphide isomerase; Provisional	99.11
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.08
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.01
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.01
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	98.94
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	98.91
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	98.89
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	98.75
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	98.69
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	98.68
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	98.68
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	98.67
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	98.66
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	98.64
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	98.62
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	98.6
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	98.59
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	98.57
KOG0191|consensus	383		98.53
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	98.53
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	98.52
KOG4277|consensus	468		98.52
PRK10996	139	thioredoxin 2; Provisional	98.5
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	98.5
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	98.44
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	98.44
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	98.42
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	98.41
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	98.4
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	98.4
PHA02278	103	thioredoxin-like protein	98.38
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	98.36
PTZ00051	98	thioredoxin; Provisional	98.36
PRK09381	109	trxA thioredoxin; Provisional	98.33
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	98.33
PLN02309	457	5'-adenylylsulfate reductase	98.32
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	98.32
cd03070	91	PDI_b_ERp44 PDIb family, ERp44 subfamily, first re	98.27
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	98.27
KOG0191|consensus	383		98.27
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	98.26
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	98.22
KOG0910|consensus	150		98.22
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	98.19
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	98.18
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	98.11
cd02947	93	TRX_family TRX family; composed of two groups: Gro	98.11
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	98.09
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	98.09
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	98.06
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	98.04
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	98.03
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	97.95
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	97.84
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	97.82
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	97.81
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	97.76
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	97.72
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.71
KOG0907|consensus	106		97.7
PTZ00062	204	glutaredoxin; Provisional	97.68
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	97.62
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	97.61
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	97.54
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	97.51
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	97.48
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	97.46
cd03074	120	PDI_b'_Calsequestrin_C Protein Disulfide Isomerase	97.42
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	97.41
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	97.37
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	97.3
KOG0908|consensus	288		97.2
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	96.87
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	96.87
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	96.84
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	96.83
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	96.25
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	96.23
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	95.85
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	95.85
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	95.82
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	95.64
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	95.63
KOG0914|consensus	265		95.3
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	95.24
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	94.99
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	94.99
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	94.92
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	94.73
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	94.72
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	94.6
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	94.6
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	94.1
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	94.07
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	94.03
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	93.96
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	93.81
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	93.71
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	93.51
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	93.25
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	92.48
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	92.46
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	92.37
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	92.36
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	92.33
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	92.18
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	92.0
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	91.84
PRK09381	109	trxA thioredoxin; Provisional	91.75
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	91.39
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	91.28
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	91.08
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	91.02
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	90.65
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	90.39
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	90.2
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	90.2
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	90.03
PRK10996	139	thioredoxin 2; Provisional	89.99
COG3118	304	Thioredoxin domain-containing protein [Posttransla	89.28
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	88.93
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	88.8
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	88.63
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	88.52
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	87.97
KOG2603|consensus	331		87.48
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	87.45
KOG1672|consensus	211		86.74
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	86.07
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	85.96
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	85.9
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	85.65
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	85.42
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	85.39
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	85.16
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	85.12
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	85.09
PF13728	215	TraF: F plasmid transfer operon protein	84.91
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	83.85
PTZ00051	98	thioredoxin; Provisional	83.58
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	83.33
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	83.3
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	83.3
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	82.51
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	82.37
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	82.35
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	81.23
smart00594	122	UAS UAS domain.	80.54
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	80.47
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	80.15

>KOG0190|consensus

Probab=99.95  E-value=8.4e-27  Score=209.84  Aligned_cols=183  Identities=34%  Similarity=0.543  Sum_probs=166.6

Q ss_pred             CCC-cccCCCCCChHHHHHHHHhhhCCCceeecCHHHHHHhHhCCCeEEEEEecCCChhHHHHHHHHHhhC-CCceEEec
Q psy7942           3 SCL-PGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKV-DDLVFDAS   80 (216)
Q Consensus         3 ~g~-~~~Y~G~Rta~~iv~~l~~~~~~~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~~~~~~f~~~A~~~-~~~~F~~~   80 (216)
                      +|. +.+|+|+|++++||.||+++++|+++.|.+.++++.|+.+.++++||||.+.++.. .+|..+|..+ +++.|+  
T Consensus       108 nG~~~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~~~vig~F~d~~~~~-~~~~~~a~~l~~d~~F~--  184 (493)
T KOG0190|consen  108 NGRSAQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKDVVVIGFFKDLESLA-ESFFDAASKLRDDYKFA--  184 (493)
T ss_pred             cCCcceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCceEEEEEecccccch-HHHHHHHHhccccceee--
Confidence            577 59999999999999999999999999999999999999999999999999888777 8888888887 899999  


Q ss_pred             chhhHHHHhhhhccccceeeecccHHHHHhcCCCCCe---EEEEecCCCCcccccCCCCCHHHHHHHHhhcCCCceeeeC
Q psy7942          81 SELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDT---VAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFN  157 (216)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~p~---i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~~  157 (216)
                                          +|++++++++++++.+.   +++++++|+....|+|++ +.+.|.+||..+++|+|+++|
T Consensus       185 --------------------~ts~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~-~~~~l~~Fi~~~~~plv~~ft  243 (493)
T KOG0190|consen  185 --------------------HTSDSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSF-TPELLKKFIQENSLPLVTEFT  243 (493)
T ss_pred             --------------------ccCcHhHHhhccCCCCCcceEEeccccccchhhccccc-CHHHHHHHHHHhcccccceec
Confidence                                99999999999988665   999999999899999999 888899999999999999999


Q ss_pred             cchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCC
Q psy7942         158 HETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDD  209 (216)
Q Consensus       158 ~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~  209 (216)
                      .++...++.+.+..++++|.+......+.+++.++++|++||++++|+..|-
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vAk~f~~~l~Fi~~d~  295 (493)
T KOG0190|consen  244 VANNAKIYSSFVKLGLDFFVFFKCNRFEELRKKFEEVAKKFKGKLRFILIDP  295 (493)
T ss_pred             ccccceeeccccccceeEEeccccccHHHHHHHHHHHHHhcccceEEEEECh
Confidence            9998899998776667777665555689999999999999999999999853

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=99.92  E-value=1.6e-23  Score=179.25  Aligned_cols=187  Identities=20%  Similarity=0.295  Sum_probs=150.1

Q ss_pred             CCCcccCCCCCChHHHHHHHHhhhCCCceeecCHHHHHHhHh-CCCeEEEEEecCCChhHHHHHHHHHhhC-CCceEEec
Q psy7942           3 SCLPGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIA-DSKVVVAGLFKDASSELAKTFNEIASKV-DDLVFDAS   80 (216)
Q Consensus         3 ~g~~~~Y~G~Rta~~iv~~l~~~~~~~v~~l~s~~~~~~~~~-~~~v~~V~f~~~~~~~~~~~f~~~A~~~-~~~~F~~~   80 (216)
                      +|..++|.|.|+|+.||+|+......||..|++..+++.|-. +.++.+||||.+..++.+++|.++|..+ +-+.|.  
T Consensus       121 d~~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~~yk~FeeAAe~F~p~IkFf--  198 (383)
T PF01216_consen  121 DGEVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSEDSEHYKEFEEAAEHFQPYIKFF--  198 (383)
T ss_dssp             TTEEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSHHHHHHHHHHHHCTTTSEEE--
T ss_pred             CCcEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCCcHHHHHHHHHHHhhcCceeEE--
Confidence            577899999999999999999999999999999999999987 5689999999998899999999999999 889999  


Q ss_pred             chhhHHHHhhhhccccceeeecccHHHHHhcCCCCCeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCCceeeeCcch
Q psy7942          81 SELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHET  160 (216)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~~~~~  160 (216)
                                          +|+++.+|++++++...|-+|++|.+.++...|+..+...|++||..|..|.++.++.++
T Consensus       199 --------------------Atfd~~vAk~L~lK~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rptlrkl~~~~  258 (383)
T PF01216_consen  199 --------------------ATFDKKVAKKLGLKLNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKRPTLRKLRPED  258 (383)
T ss_dssp             --------------------EE-SHHHHHHHT-STT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-SEEE--GGG
T ss_pred             --------------------EEecchhhhhcCccccceeeeccccCCCccCCCCCCCHHHHHHHHHHhchhHhhhCChhh
Confidence                                999999999999998999999999988999998776999999999999999999999999


Q ss_pred             HHHhhccCCc-ceEEEEEeCCccchhhhhHHHHHHHHhccCc--eEEEEcCCCC
Q psy7942         161 AQKIFGGEIK-SHLLVFFSKAAGHYESHFEPVQTVAKDFREK--EEQDEDDDQP  211 (216)
Q Consensus       161 ~~~~~~~~~~-~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~--~~f~~~d~~~  211 (216)
                      +..+++..+. .+++.|++.+.++.-++++.|+++|+++.++  ++++|+|-..
T Consensus       259 m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~  312 (383)
T PF01216_consen  259 MFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDD  312 (383)
T ss_dssp             HHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG
T ss_pred             hhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCC
Confidence            9999987654 4566688887788899999999999999875  8999998543

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=99.85  E-value=1e-20  Score=150.98  Aligned_cols=135  Identities=32%  Similarity=0.507  Sum_probs=120.8

Q ss_pred             ecCCChhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCCCeEEEEecCCCCccccc
Q psy7942          54 FKDASSELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYE  132 (216)
Q Consensus        54 ~~~~~~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~p~i~~~~~~de~~~~y~  132 (216)
                      |++.++++++.|.++|+.+ +++.|+                      ++.+++++++++++.|+|++||++++.+..|+
T Consensus         1 F~~~~~~~~~~f~~~A~~~~~~~~F~----------------------~~~~~~~~~~~~~~~p~i~~~k~~~~~~~~y~   58 (184)
T PF13848_consen    1 FPDKDSELFEIFEEAAEKLKGDYQFG----------------------VTFNEELAKKYGIKEPTIVVYKKFDEKPVVYD   58 (184)
T ss_dssp             ESTTTSHHHHHHHHHHHHHTTTSEEE----------------------EEE-HHHHHHCTCSSSEEEEEECTTTSEEEES
T ss_pred             CCCcccHHHHHHHHHHHhCcCCcEEE----------------------EEcHHHHHHHhCCCCCcEEEeccCCCCceecc
Confidence            5677889999999999998 689999                      89899999999999999999999888889999


Q ss_pred             CC-CCCHHHHHHHHhhcCCCceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         133 GP-ASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       133 G~-~~~~~~l~~fi~~~~~P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      |+ + +.+.|.+||..+++|+|+++|.+++..++..+.+.++++|.+.+.+..+.+.+.++++|+++++++.|+|+|...
T Consensus        59 ~~~~-~~~~l~~fI~~~~~P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~  137 (184)
T PF13848_consen   59 GDKF-TPEELKKFIKKNSFPLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADD  137 (184)
T ss_dssp             SSTT-SHHHHHHHHHHHSSTSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTT
T ss_pred             cccC-CHHHHHHHHHHhccccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHH
Confidence            98 8 999999999999999999999999999999875445666766666677889999999999999999999999873

...

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.80  E-value=4.6e-18  Score=153.57  Aligned_cols=184  Identities=34%  Similarity=0.533  Sum_probs=152.9

Q ss_pred             CCCc--ccCCCCCChHHHHHHHHhhhCCCceeecCHHHHHHhHhCCCeEEEEEecCCChhHHHHHHHHHhhC-CCce-EE
Q psy7942           3 SCLP--GERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKV-DDLV-FD   78 (216)
Q Consensus         3 ~g~~--~~Y~G~Rta~~iv~~l~~~~~~~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~~~~~~f~~~A~~~-~~~~-F~   78 (216)
                      +|..  ..|.|+|+++.|++|+.+.+++++..+++.++++.+++.+++.+|+|+.+.++.....|.++|..+ +.+. |+
T Consensus        84 ~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  163 (462)
T TIGR01130        84 NGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKDLDSELNDTFLSVAEKLRDVYFFFA  163 (462)
T ss_pred             CCccceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHHHHHhhhccceEE
Confidence            4554  799999999999999999999999999999999999999999999999887888999999999998 4554 55


Q ss_pred             ecchhhHHHHhhhhccccceeeecccHHHHHhcCCCCCeEEEEecCCCCc--ccccCCCC-CHHHHHHHHhhcCCCceee
Q psy7942          79 ASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGR--VNYEGPAS-DEAALRKFLSTQSLPLVVE  155 (216)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~p~i~~~~~~de~~--~~y~G~~~-~~~~l~~fi~~~~~P~v~~  155 (216)
                                            .+.+..+.++++...+++++|++.++..  ..|.|+.+ +.+.|.+||..+++|++.+
T Consensus       164 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~  221 (462)
T TIGR01130       164 ----------------------HSSDVAAFAKLGAFPDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGE  221 (462)
T ss_pred             ----------------------ecCCHHHHhhcCCCCCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCceEe
Confidence                                  6677778888888778888888765443  36787652 5689999999999999999


Q ss_pred             eCcchHHHhhccCCcceEEEEEeC--CccchhhhhHHHHHHHHhccC-ceEEEEcCCC
Q psy7942         156 FNHETAQKIFGGEIKSHLLVFFSK--AAGHYESHFEPVQTVAKDFRE-KEEQDEDDDQ  210 (216)
Q Consensus       156 ~~~~~~~~~~~~~~~~~lllf~~~--~~~~~~~~~~~l~~vA~~~r~-~~~f~~~d~~  210 (216)
                      ++.+++..+++.+ + .+++|+..  +....+++.+.++++|++|++ ++.|.++|..
T Consensus       222 ~~~~~~~~~~~~~-~-~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~  277 (462)
T TIGR01130       222 FTQETAAKYFESG-P-LVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEE  277 (462)
T ss_pred             eCCcchhhHhCCC-C-ceeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHH
Confidence            9999999999876 3 23444432  222347899999999999997 8999999874

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PTZ00102 disulphide isomerase; Provisional

Probab=99.77  E-value=2.1e-17  Score=150.55  Aligned_cols=176  Identities=30%  Similarity=0.393  Sum_probs=146.1

Q ss_pred             CCCcccCCCCCChHHHHHHHHhhhCCCceeecCHHHHHHhHhCCCeEEEEEecCCChhHHHHHHHHHhhC-CCceEEecc
Q psy7942           3 SCLPGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKV-DDLVFDASS   81 (216)
Q Consensus         3 ~g~~~~Y~G~Rta~~iv~~l~~~~~~~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~~~~~~f~~~A~~~-~~~~F~~~~   81 (216)
                      +|.+..|.|+|++++|++|+.+.++|++..+++.++++.+.....+++++++.+.+++..+.|.++|..+ +.+.|+   
T Consensus       115 ~g~~~~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~F~---  191 (477)
T PTZ00102        115 KGNPVNYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSKDSELYKKFEEVADKHREHAKFF---  191 (477)
T ss_pred             CCceEEecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccCCcHHHHHHHHHHHhccccceEE---
Confidence            4566799999999999999999999999999999999888888889999999888889999999999988 677887   


Q ss_pred             hhhHHHHhhhhccccceeeecccHHHHHhcCCCCCeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCCceeeeCcchH
Q psy7942          82 ELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETA  161 (216)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~~~~~~  161 (216)
                                         .+.+.        ..+.+.+|++.++ ...|.+.. +.++|.+||..+.+|++++++.+++
T Consensus       192 -------------------~~~~~--------~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~fI~~~~~P~~~~~~~~~~  242 (477)
T PTZ00102        192 -------------------VKKHE--------GKNKIYVLHKDEE-GVELFMGK-TKEELEEFVSTESFPLFAEINAENY  242 (477)
T ss_pred             -------------------EEcCC--------CCCcEEEEecCCC-CcccCCCC-CHHHHHHHHHHcCCCceeecCccch
Confidence                               44322        3478899987544 44444445 8899999999999999999999999


Q ss_pred             HHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCCCc
Q psy7942         162 QKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQPKR  213 (216)
Q Consensus       162 ~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~~~  213 (216)
                      ..++..+.  ++++|+. ..++..++.+.++++|++|+++++|+|+|....+
T Consensus       243 ~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~~  291 (477)
T PTZ00102        243 RRYISSGK--DLVWFCG-TTEDYDKYKSVVRKVARKLREKYAFVWLDTEQFG  291 (477)
T ss_pred             HHHhcCCc--cEEEEec-CHHHHHHHHHHHHHHHHhccCceEEEEEechhcc
Confidence            99998763  3444443 3345678999999999999999999999987654

>KOG0912|consensus

Probab=99.67  E-value=9.7e-16  Score=129.58  Aligned_cols=181  Identities=23%  Similarity=0.352  Sum_probs=140.0

Q ss_pred             ccCCCCCChHHHHHHHHhhhCCCceeecCHHHHHHhHhCCCeEEEEEecCCChhHHHHHHHHHhhC-CCceEEecchhhH
Q psy7942           7 GERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKV-DDLVFDASSELAK   85 (216)
Q Consensus         7 ~~Y~G~Rta~~iv~~l~~~~~~~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~~~~~~f~~~A~~~-~~~~F~~~~~~~~   85 (216)
                      .+|+|.|+.++|.+|++++..-++.++.|..++++.....+-.+||||.+.+++.++.|.+||.-+ +++.|-+      
T Consensus        87 rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey~~~~kva~~lr~dc~f~V------  160 (375)
T KOG0912|consen   87 REYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEYDNLRKVASLLRDDCVFLV------  160 (375)
T ss_pred             hhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCCchHHHHHHHHHHHhhccEEEe------
Confidence            389999999999999999999999999999999999987888999999999999999999999987 7887761      


Q ss_pred             HHHhhhhccccceeeecccHHHHHhcCCCCCeEEEEecCC-CCcccccCCCCCHHHHHHHHhhcCCCceeeeCcchHHHh
Q psy7942          86 TFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFD-EGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKI  164 (216)
Q Consensus        86 ~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~p~i~~~~~~d-e~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~~~~~~~~~  164 (216)
                                      -. .++.....-++-.+.+|++.. +....|.|++++.+.|..||.+...|+|+|+|-+|+..+
T Consensus       161 ----------------~~-gD~~~~~~~~~~~~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLVREiTFeN~EEL  223 (375)
T KOG0912|consen  161 ----------------GF-GDLLKPHEPPGKNILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLVREITFENAEEL  223 (375)
T ss_pred             ----------------ec-cccccCCCCCCCceEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhhhhhhhccHHHH
Confidence                            11 112222222232356666532 223479999999999999999999999999999999999


Q ss_pred             hccCCcceEEEEEeCCccchhhhhHHHHHHHHhcc---CceEEEEcCCCCCc
Q psy7942         165 FGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFR---EKEEQDEDDDQPKR  213 (216)
Q Consensus       165 ~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r---~~~~f~~~d~~~~~  213 (216)
                      -+.+. +.+++|..+++.  .....--..++++.-   ..++|+..|+.-++
T Consensus       224 tEEGl-PflILf~~kdD~--~s~k~F~~aI~ReL~~e~~~in~l~ADG~~f~  272 (375)
T KOG0912|consen  224 TEEGL-PFLILFRKKDDK--ESEKIFKNAIARELDDETLAINFLTADGKVFK  272 (375)
T ss_pred             hhcCC-ceEEEEecCCcc--cHHHHHHHHHHHHhhhhhhccceeecCcceec
Confidence            99885 567788876542  333333445566653   34899999987654

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.63  E-value=5.4e-15  Score=106.60  Aligned_cols=96  Identities=35%  Similarity=0.634  Sum_probs=88.0

Q ss_pred             ceeecCHHHHHHhHhCCCeEEEEEecCCChhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHH
Q psy7942          30 AKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADIL  108 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~  108 (216)
                      ++.|++.+++++++..+++++||||.+.+++.+++|.++|..+ +++.|+                      ++.+++++
T Consensus         1 ~~~i~s~~~l~~~~~~~~~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~----------------------~~~~~~~~   58 (97)
T cd02981           1 VKELTSKEELEKFLDKDDVVVVGFFKDEESEEYKTFEKVAESLRDDYGFG----------------------HTSDKEVA   58 (97)
T ss_pred             CeecCCHHHHHHHhccCCeEEEEEECCCCcHHHHHHHHHHHhcccCCeEE----------------------EEChHHHH
Confidence            3578899999999999999999999999999999999999999 689999                      88889999


Q ss_pred             HhcCCCCCeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         109 AEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       109 ~~~~v~~p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ++++++.|++++||++++.+..|+|++ +.++|.+||..+
T Consensus        59 ~~~~~~~~~i~l~~~~~~~~~~y~g~~-~~~~l~~fi~~~   97 (97)
T cd02981          59 KKLKVKPGSVVLFKPFEEEPVEYDGEF-TEESLVEFIKDN   97 (97)
T ss_pred             HHcCCCCCceEEeCCcccCCccCCCCC-CHHHHHHHHHhC
Confidence            999988899999999888888899999 899999999864

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=99.61  E-value=7.9e-15  Score=107.90  Aligned_cols=96  Identities=25%  Similarity=0.582  Sum_probs=87.9

Q ss_pred             ceeecCHHHHHHhHhCCCeEEEEEecCCChhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHH
Q psy7942          30 AKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADIL  108 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~  108 (216)
                      ++.|++.+++++|+..+++++||||.+.+++.+++|.++|..+ +++.|+                      ++.+++++
T Consensus         2 ~~~i~s~~~l~~f~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~----------------------~~~~~~~~   59 (104)
T cd03069           2 SVELRTEAEFEKFLSDDDASVVGFFEDEDSKLLSEFLKAADTLRESFRFA----------------------HTSDKQLL   59 (104)
T ss_pred             ccccCCHHHHHHHhccCCcEEEEEEcCCCchHHHHHHHHHHhhhhcCEEE----------------------EEChHHHH
Confidence            5788899999999999999999999998889999999999999 899999                      89899999


Q ss_pred             HhcCCCCCeEEEE------ecCCCCcccccCCCCCHHHHHHHHhhcC
Q psy7942         109 AEYSVDDDTVAIF------KKFDEGRVNYEGPASDEAALRKFLSTQS  149 (216)
Q Consensus       109 ~~~~v~~p~i~~~------~~~de~~~~y~G~~~~~~~l~~fi~~~~  149 (216)
                      +.+++ .|++++|      ++++++...|+|++ +.+.|.+||..+.
T Consensus        60 ~~~~~-~~~ivl~~p~~~~~k~de~~~~y~g~~-~~~~l~~fi~~~~  104 (104)
T cd03069          60 EKYGY-GEGVVLFRPPRLSNKFEDSSVKFDGDL-DSSKIKKFIRENI  104 (104)
T ss_pred             HhcCC-CCceEEEechhhhcccCcccccccCcC-CHHHHHHHHHhhC
Confidence            99999 8999999      56788888899999 8999999998763

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.61  E-value=1.2e-14  Score=106.56  Aligned_cols=98  Identities=23%  Similarity=0.399  Sum_probs=89.9

Q ss_pred             CceeecCHHHHHHhHh-CCCeEEEEEecCCChhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHH
Q psy7942          29 PAKEFTSVDEIKAFIA-DSKVVVAGLFKDASSELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNAD  106 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~~-~~~v~~V~f~~~~~~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~  106 (216)
                      +++.|++.+++++|++ ++++++||||.+.+++.+++|.++|..+ +++.|+                      ++.+++
T Consensus         1 ~v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~----------------------~~~~~~   58 (102)
T cd03066           1 PVEIINSERELQAFENIEDDIKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFF----------------------ATFDSK   58 (102)
T ss_pred             CceEcCCHHHHHHHhcccCCeEEEEEECCCCCHHHHHHHHHHHhhhcCCEEE----------------------EECcHH
Confidence            4678899999999999 8999999999998899999999999999 899999                      999999


Q ss_pred             HHHhcCCCCCeEEEEecCCCCcccc-cCCCCCHHHHHHHHhhcC
Q psy7942         107 ILAEYSVDDDTVAIFKKFDEGRVNY-EGPASDEAALRKFLSTQS  149 (216)
Q Consensus       107 v~~~~~v~~p~i~~~~~~de~~~~y-~G~~~~~~~l~~fi~~~~  149 (216)
                      +++.+++..|+|+++++++++...| .|+. +.+.|.+||..+.
T Consensus        59 ~~~~~~~~~~~i~l~~~~~e~~~~y~~g~~-~~~~l~~fi~~~~  101 (102)
T cd03066          59 VAKKLGLKMNEVDFYEPFMEEPVTIPDKPY-SEEELVDFVEEHK  101 (102)
T ss_pred             HHHHcCCCCCcEEEeCCCCCCCcccCCCCC-CHHHHHHHHHHhc
Confidence            9999999899999999988888889 8888 9999999998763

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>KOG4277|consensus

Probab=99.57  E-value=3.9e-14  Score=119.99  Aligned_cols=180  Identities=17%  Similarity=0.183  Sum_probs=130.7

Q ss_pred             CCCcccCCCCCChHHHHHHHHhhhCCCceeecC-HHHHHHhHhCCCeEEEEEecCCChhHHHHHHHHHhhC-CCceEEec
Q psy7942           3 SCLPGERRGGRTAEDIVNWLLKKTGPPAKEFTS-VDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKV-DDLVFDAS   80 (216)
Q Consensus         3 ~g~~~~Y~G~Rta~~iv~~l~~~~~~~v~~l~s-~~~~~~~~~~~~v~~V~f~~~~~~~~~~~f~~~A~~~-~~~~F~~~   80 (216)
                      +|...+|+|+|+.++|++|+.|..++-+..|.+ ...++..-..+.+.+|+|.. .++++.+.|.++|... --..|.  
T Consensus       109 gd~a~dYRG~R~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffVf~Gt-ge~PL~d~fidAASe~~~~a~Ff--  185 (468)
T KOG4277|consen  109 GDHAIDYRGGREKDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFFVFFGT-GEGPLFDAFIDAASEKFSVARFF--  185 (468)
T ss_pred             CCeeeecCCCccHHHHHHHHHhcccceeeecChhHHHHHHHhhccCceEEEEeC-CCCcHHHHHHHHhhhheeeeeee--
Confidence            677899999999999999999999998888875 44455566678888887654 4689999999999865 222332  


Q ss_pred             chhhHHHHhhhhccccceeeecccHHHHHhcC-CCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCCceeeeCc
Q psy7942          81 SELAKTFNEIASKVDDLVFVTSTNADILAEYS-VDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNH  158 (216)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~-v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~~~  158 (216)
                                           +.+.+++..++ .+. |+|.+|+  |+...+|+ +. +.++|..||...++|-+-..+.
T Consensus       186 ---------------------SaseeVaPe~~~~kempaV~VFK--Detf~i~d-e~-dd~dLseWinRERf~~fLa~dg  240 (468)
T KOG4277|consen  186 ---------------------SASEEVAPEENDAKEMPAVAVFK--DETFEIED-EG-DDEDLSEWINRERFPGFLAADG  240 (468)
T ss_pred             ---------------------ccccccCCcccchhhccceEEEc--cceeEEEe-cC-chhHHHHHHhHhhccchhhccc
Confidence                                 33344554443 333 9999999  56454543 22 4488999999999999999999


Q ss_pred             chHHHhhccCCcceEEEEEeCC-----ccchhhhhHHHHHHHHhccC------ceEEEEcCCCC
Q psy7942         159 ETAQKIFGGEIKSHLLVFFSKA-----AGHYESHFEPVQTVAKDFRE------KEEQDEDDDQP  211 (216)
Q Consensus       159 ~~~~~~~~~~~~~~lllf~~~~-----~~~~~~~~~~l~~vA~~~r~------~~~f~~~d~~~  211 (216)
                      .++..+-.++... ++++.+..     ..+..++.....++|+++|+      ++.|.|.|++.
T Consensus       241 flL~EiG~sGKLV-aLaVidEkhk~nns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD  303 (468)
T KOG4277|consen  241 FLLAEIGASGKLV-ALAVIDEKHKFNNSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDGND  303 (468)
T ss_pred             chHHHhCcCCceE-EEEEeccccccCCcchhHHHHHHHHHHHHHHHhChhhhhhceeeccchhH
Confidence            8888887776322 33333322     12335688899999999986      36899999864

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=99.52  E-value=1.7e-13  Score=101.41  Aligned_cols=97  Identities=16%  Similarity=0.471  Sum_probs=87.1

Q ss_pred             CceeecCHHHHHHhHhCC-CeEEEEEecCCChhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHH
Q psy7942          29 PAKEFTSVDEIKAFIADS-KVVVAGLFKDASSELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNAD  106 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~~~~-~v~~V~f~~~~~~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~  106 (216)
                      +++.|++.++++.|+.+. ++++||||.+.+++.+++|.++|..+ +++.|+                      ++.+.+
T Consensus         1 ~v~~i~s~~ele~f~~~~~~~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~----------------------~t~~~~   58 (107)
T cd03068           1 PSKQLQTLKQVQEFLRDGDDVIIIGVFSGEEDPAYQLYQDAANSLREDYKFH----------------------HTFDSE   58 (107)
T ss_pred             CceEcCCHHHHHHHHhcCCCEEEEEEECCCCCHHHHHHHHHHHhcccCCEEE----------------------EEChHH
Confidence            467899999999999887 99999999988888999999999999 899999                      888899


Q ss_pred             HHHhcCCCCCeEEEE------ecCCCCcccccCC-CCCHHH-HHHHHhhc
Q psy7942         107 ILAEYSVDDDTVAIF------KKFDEGRVNYEGP-ASDEAA-LRKFLSTQ  148 (216)
Q Consensus       107 v~~~~~v~~p~i~~~------~~~de~~~~y~G~-~~~~~~-l~~fi~~~  148 (216)
                      +++++++..|.+++|      +++++....|.|+ . +.++ |.+||+.|
T Consensus        59 ~~~~~~~~~~~vvl~rp~~~~~k~e~~~~~~~~~~~-~~~~~~~~f~~~~  107 (107)
T cd03068          59 IFKSLKVSPGQLVVFQPEKFQSKYEPKSHVLNKKDS-TSEDELKDFFKEH  107 (107)
T ss_pred             HHHhcCCCCCceEEECcHHHhhhcCcceeeeecccc-chHHHHHHHHhcC
Confidence            999999989999999      5788999999998 7 5545 99999875

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>KOG0190|consensus

Probab=99.32  E-value=2.6e-11  Score=110.00  Aligned_cols=164  Identities=20%  Similarity=0.306  Sum_probs=125.3

Q ss_pred             HHHHHHHhhh----CCCceeecCHHHHHHhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhC--C--CceEEecchhhH
Q psy7942          17 DIVNWLLKKT----GPPAKEFTSVDEIKAFIADSKVVVAGLFKDAS---SELAKTFNEIASKV--D--DLVFDASSELAK   85 (216)
Q Consensus        17 ~iv~~l~~~~----~~~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~--~--~~~F~~~~~~~~   85 (216)
                      .++.|+....    +..|-+|+ .++++.++..++.++|.||++||   +.+.++|.++|..+  .  .+..+       
T Consensus        10 ~~~~~~~~a~~~~~~~~Vl~Lt-~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~La-------   81 (493)
T KOG0190|consen   10 LPVASSEAASVPKAEEDVLVLT-KDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLA-------   81 (493)
T ss_pred             cchhhhhhhhcCCcccceEEEe-cccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeE-------
Confidence            3445555443    23455665 58999999999999999999997   57788999999887  2  55666       


Q ss_pred             HHHhhhhccccceeeecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCCceeeeCc-chHHH
Q psy7942          86 TFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNH-ETAQK  163 (216)
Q Consensus        86 ~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~~~-~~~~~  163 (216)
                             +||     +|.+.+++.+|++++ ||+.+||++.. ...|+|++ +.++|..|+++.+.|....+.. +.+..
T Consensus        82 -------kVD-----at~~~~~~~~y~v~gyPTlkiFrnG~~-~~~Y~G~r-~adgIv~wl~kq~gPa~~~l~~~~~a~~  147 (493)
T KOG0190|consen   82 -------KVD-----ATEESDLASKYEVRGYPTLKIFRNGRS-AQDYNGPR-EADGIVKWLKKQSGPASKTLKTVDEAEE  147 (493)
T ss_pred             -------Eee-----cchhhhhHhhhcCCCCCeEEEEecCCc-ceeccCcc-cHHHHHHHHHhccCCCceecccHHHHHh
Confidence                   888     999999999999997 99999997543 68999999 9999999999999999999985 45666


Q ss_pred             hhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEc
Q psy7942         164 IFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDED  207 (216)
Q Consensus       164 ~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~  207 (216)
                      +.+.. ...++.|.....  ...  +.+-.+|...++.+.|...
T Consensus       148 ~l~~~-~~~vig~F~d~~--~~~--~~~~~~a~~l~~d~~F~~t  186 (493)
T KOG0190|consen  148 FLSKK-DVVVIGFFKDLE--SLA--ESFFDAASKLRDDYKFAHT  186 (493)
T ss_pred             hccCC-ceEEEEEecccc--cch--HHHHHHHHhccccceeecc
Confidence            66553 333444543221  122  6677778888888888744

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.20  E-value=1.7e-10  Score=86.33  Aligned_cols=97  Identities=22%  Similarity=0.342  Sum_probs=79.3

Q ss_pred             ceeecCHHHHHHhHhCCCeEEEEEec--CCChhHHHHHHHHHhhC----CCceEEecchhhHHHHhhhhccccceeee--
Q psy7942          30 AKEFTSVDEIKAFIADSKVVVAGLFK--DASSELAKTFNEIASKV----DDLVFDASSELAKTFNEIASKVDDLVFVT--  101 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~v~~V~f~~--~~~~~~~~~f~~~A~~~----~~~~F~~~~~~~~~~~~~~~~~~~~~~~~--  101 (216)
                      +..|+ .+++++++++++.++|-||.  +||.. .+.|.++|..+    +++.++              +||     +  
T Consensus         3 ~v~L~-~~nF~~~v~~~~~vlV~F~A~~Pwc~k-~~~~~~LA~e~~~aa~~v~la--------------kVd-----~~d   61 (116)
T cd03007           3 CVDLD-TVTFYKVIPKFKYSLVKFDTAYPYGEK-HEAFTRLAESSASATDDLLVA--------------EVG-----IKD   61 (116)
T ss_pred             eeECC-hhhHHHHHhcCCcEEEEEeCCCCCCCC-hHHHHHHHHHHHhhcCceEEE--------------EEe-----ccc
Confidence            34554 58999999999999999999  88875 37788888665    357777              677     6  


Q ss_pred             ---cccHHHHHhcCCC--C-CeEEEEecCC-CCcccccCC-CCCHHHHHHHHhhc
Q psy7942         102 ---STNADILAEYSVD--D-DTVAIFKKFD-EGRVNYEGP-ASDEAALRKFLSTQ  148 (216)
Q Consensus       102 ---t~~~~v~~~~~v~--~-p~i~~~~~~d-e~~~~y~G~-~~~~~~l~~fi~~~  148 (216)
                         +.+.+++++|+|+  + |+|.+|++.+ +.+..|.|+ + +.++|.+||+.+
T Consensus        62 ~~~~~~~~L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r-~~~~lv~~v~~~  115 (116)
T cd03007          62 YGEKLNMELGERYKLDKESYPVIYLFHGGDFENPVPYSGADV-TVDALQRFLKGN  115 (116)
T ss_pred             ccchhhHHHHHHhCCCcCCCCEEEEEeCCCcCCCccCCCCcc-cHHHHHHHHHhc
Confidence               6678999999998  5 9999999863 346889996 8 999999999876

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>KOG0912|consensus

Probab=99.17  E-value=1.8e-10  Score=97.89  Aligned_cols=147  Identities=22%  Similarity=0.327  Sum_probs=111.3

Q ss_pred             HHHHHHhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhC----C--CceEEecchhhHHHHhhhhccccceeeecccHH
Q psy7942          36 VDEIKAFIADSKVVVAGLFKDAS---SELAKTFNEIASKV----D--DLVFDASSELAKTFNEIASKVDDLVFVTSTNAD  106 (216)
Q Consensus        36 ~~~~~~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~----~--~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~  106 (216)
                      .++++..+.++.+++|.||++||   ..+.++|.++|..+    +  .+.+|              .||     +..+.+
T Consensus         3 ~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg--------------~VD-----cd~e~~   63 (375)
T KOG0912|consen    3 SENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWG--------------KVD-----CDKEDD   63 (375)
T ss_pred             cccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEE--------------Ecc-----cchhhH
Confidence            35778889999999999999998   46788999999876    2  45577              677     888889


Q ss_pred             HHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCCceeeeCcch-HHHhhccCCcceEEEEEeCCccch
Q psy7942         107 ILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHET-AQKIFGGEIKSHLLVFFSKAAGHY  184 (216)
Q Consensus       107 v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~~~~~-~~~~~~~~~~~~lllf~~~~~~~~  184 (216)
                      ++.+|.+.. ||+.+|+++.-..-.|.|.+ ..++|.+||+...--.+.++.+-+ ++.+...+.+..+.+|-+.+.+++
T Consensus        64 ia~ky~I~KyPTlKvfrnG~~~~rEYRg~R-sVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey  142 (375)
T KOG0912|consen   64 IADKYHINKYPTLKVFRNGEMMKREYRGQR-SVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEY  142 (375)
T ss_pred             HhhhhccccCceeeeeeccchhhhhhccch-hHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCCchH
Confidence            999999986 99999998654456799999 999999999988655578876643 444443243333334544554333


Q ss_pred             hhhhHHHHHHHHhccCceEEEE
Q psy7942         185 ESHFEPVQTVAKDFREKEEQDE  206 (216)
Q Consensus       185 ~~~~~~l~~vA~~~r~~~~f~~  206 (216)
                          +.+++||.-+|++..|+.
T Consensus       143 ----~~~~kva~~lr~dc~f~V  160 (375)
T KOG0912|consen  143 ----DNLRKVASLLRDDCVFLV  160 (375)
T ss_pred             ----HHHHHHHHHHhhccEEEe
Confidence                678899999998876643

>PTZ00102 disulphide isomerase; Provisional

Probab=99.11  E-value=3.5e-09  Score=96.60  Aligned_cols=152  Identities=18%  Similarity=0.323  Sum_probs=115.3

Q ss_pred             ceeecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC----CCceEEecchhhHHHHhhhhccccceeeec
Q psy7942          30 AKEFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKV----DDLVFDASSELAKTFNEIASKVDDLVFVTS  102 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~----~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t  102 (216)
                      +..+ +.++++.++++++.++|.|+++||.   ...+.|.++|..+    .++.|+              .+|     ++
T Consensus        34 v~~l-~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~--------------~vd-----~~   93 (477)
T PTZ00102         34 VTVL-TDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLA--------------SVD-----AT   93 (477)
T ss_pred             cEEc-chhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEE--------------EEE-----CC
Confidence            4455 4578899999999999999999984   4456788888765    357888              676     88


Q ss_pred             ccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCCceeeeCcchHHHhhccCCcceEEEEEeCCc
Q psy7942         103 TNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAA  181 (216)
Q Consensus       103 ~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~  181 (216)
                      .+.+++++|++.+ |++++|++.  ....|.|.+ +.+.|.+|+....-|.+.+++...-...+.......++..+... 
T Consensus        94 ~~~~l~~~~~i~~~Pt~~~~~~g--~~~~y~g~~-~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-  169 (477)
T PTZ00102         94 EEMELAQEFGVRGYPTIKFFNKG--NPVNYSGGR-TADGIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSK-  169 (477)
T ss_pred             CCHHHHHhcCCCcccEEEEEECC--ceEEecCCC-CHHHHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccC-
Confidence            8899999999986 999999964  345899999 99999999999999999999875433334343223233333222 


Q ss_pred             cchhhhhHHHHHHHHhccCceEEEEc
Q psy7942         182 GHYESHFEPVQTVAKDFREKEEQDED  207 (216)
Q Consensus       182 ~~~~~~~~~l~~vA~~~r~~~~f~~~  207 (216)
                        .....+.+.++|..+|+...|...
T Consensus       170 --~~~~~~~f~~~a~~~~~~~~F~~~  193 (477)
T PTZ00102        170 --DSELYKKFEEVADKHREHAKFFVK  193 (477)
T ss_pred             --CcHHHHHHHHHHHhccccceEEEE
Confidence              246778899999999988777654

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.08  E-value=4.1e-09  Score=95.29  Aligned_cols=149  Identities=21%  Similarity=0.379  Sum_probs=115.7

Q ss_pred             ceeecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC----CCceEEecchhhHHHHhhhhccccceeeec
Q psy7942          30 AKEFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKV----DDLVFDASSELAKTFNEIASKVDDLVFVTS  102 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~----~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t  102 (216)
                      +..| +.++++.+++++++++|.|+++||.   ...+.|.++|..+    ..+.|+              .+|     +.
T Consensus         3 v~~l-~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~--------------~vd-----~~   62 (462)
T TIGR01130         3 VLVL-TKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLA--------------KVD-----AT   62 (462)
T ss_pred             ceEC-CHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEE--------------EEE-----CC
Confidence            3455 4678999999999999999999984   4457888888876    247888              566     77


Q ss_pred             ccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCCceeeeC-cchHHHhhccCCcceEEEEEeCC
Q psy7942         103 TNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFN-HETAQKIFGGEIKSHLLVFFSKA  180 (216)
Q Consensus       103 ~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~~-~~~~~~~~~~~~~~~lllf~~~~  180 (216)
                      .++++++++++.+ |++++|++.......|.|.. +.+.|.+||.....|.+.+++ .+.+..+.... ...+++|....
T Consensus        63 ~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~-~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~-~~~vi~~~~~~  140 (462)
T TIGR01130        63 EEKDLAQKYGVSGYPTLKIFRNGEDSVSDYNGPR-DADGIVKYMKKQSGPAVKEIETVADLEAFLADD-DVVVIGFFKDL  140 (462)
T ss_pred             CcHHHHHhCCCccccEEEEEeCCccceeEecCCC-CHHHHHHHHHHhcCCCceeecCHHHHHHHHhcC-CcEEEEEECCC
Confidence            8889999999986 99999996432247899999 999999999999999999997 56677766654 34555565432


Q ss_pred             ccchhhhhHHHHHHHHhccCceE
Q psy7942         181 AGHYESHFEPVQTVAKDFREKEE  203 (216)
Q Consensus       181 ~~~~~~~~~~l~~vA~~~r~~~~  203 (216)
                         .......+.++|+.+++.+.
T Consensus       141 ---~~~~~~~~~~~a~~~~~~~~  160 (462)
T TIGR01130       141 ---DSELNDTFLSVAEKLRDVYF  160 (462)
T ss_pred             ---CcHHHHHHHHHHHHhhhccc
Confidence               24667889999999988765

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.01  E-value=4.3e-09  Score=78.56  Aligned_cols=96  Identities=16%  Similarity=0.317  Sum_probs=77.5

Q ss_pred             CCceeecCHHHHHHh---HhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceee
Q psy7942          28 PPAKEFTSVDEIKAF---IADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFV  100 (216)
Q Consensus        28 ~~v~~l~s~~~~~~~---~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~  100 (216)
                      +.|..|+ .+++++.   ++++++++|.||++||+   .+.+.|.++|+.+ +.+.|+              +||     
T Consensus         9 ~~v~~l~-~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~--------------~Vd-----   68 (113)
T cd03006           9 SPVLDFY-KGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFV--------------AIN-----   68 (113)
T ss_pred             CCeEEec-hhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEE--------------EEE-----
Confidence            4566775 4667665   67899999999999984   4567999999998 567888              677     


Q ss_pred             ecccHHHH-HhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHH
Q psy7942         101 TSTNADIL-AEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFL  145 (216)
Q Consensus       101 ~t~~~~v~-~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi  145 (216)
                      +..+.+++ ++|++.. |++.+|++.. ....|.|.. +.+.|..|+
T Consensus        69 ~d~~~~l~~~~~~I~~~PTl~lf~~g~-~~~~y~G~~-~~~~i~~~~  113 (113)
T cd03006          69 CWWPQGKCRKQKHFFYFPVIHLYYRSR-GPIEYKGPM-RAPYMEKFV  113 (113)
T ss_pred             CCCChHHHHHhcCCcccCEEEEEECCc-cceEEeCCC-CHHHHHhhC
Confidence            77788888 5899986 9999999754 368899999 999999885

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.01  E-value=3.8e-09  Score=75.92  Aligned_cols=96  Identities=24%  Similarity=0.440  Sum_probs=79.8

Q ss_pred             eeecCHHHHHHhHhC-CCeEEEEEecCCC---hhHHHHHHHHHhhCC-CceEEecchhhHHHHhhhhccccceeeecccH
Q psy7942          31 KEFTSVDEIKAFIAD-SKVVVAGLFKDAS---SELAKTFNEIASKVD-DLVFDASSELAKTFNEIASKVDDLVFVTSTNA  105 (216)
Q Consensus        31 ~~l~s~~~~~~~~~~-~~v~~V~f~~~~~---~~~~~~f~~~A~~~~-~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~  105 (216)
                      ..++ .+++++.+.+ ++.++|.|+.+||   ....+.|.+++..+. .+.|+              .+|     +..++
T Consensus         2 ~~lt-~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~--------------~vd-----~~~~~   61 (103)
T PF00085_consen    2 IVLT-DENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFA--------------KVD-----CDENK   61 (103)
T ss_dssp             EEES-TTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEE--------------EEE-----TTTSH
T ss_pred             EECC-HHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccc--------------hhh-----hhccc
Confidence            3444 5788888886 9999999999998   456779999999994 88888              666     77788


Q ss_pred             HHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         106 DILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       106 ~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      .++++|++.. |++++|+++.. ...|.|.. +.+.|.+||++|
T Consensus        62 ~l~~~~~v~~~Pt~~~~~~g~~-~~~~~g~~-~~~~l~~~i~~~  103 (103)
T PF00085_consen   62 ELCKKYGVKSVPTIIFFKNGKE-VKRYNGPR-NAESLIEFIEKH  103 (103)
T ss_dssp             HHHHHTTCSSSSEEEEEETTEE-EEEEESSS-SHHHHHHHHHHH
T ss_pred             hhhhccCCCCCCEEEEEECCcE-EEEEECCC-CHHHHHHHHHcC
Confidence            9999999986 99999997443 44899998 999999999875

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=98.94  E-value=1.5e-08  Score=73.42  Aligned_cols=95  Identities=15%  Similarity=0.250  Sum_probs=77.8

Q ss_pred             CceeecCHHHHHHhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeeccc
Q psy7942          29 PAKEFTSVDEIKAFIADSKVVVAGLFKDAS---SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTN  104 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~  104 (216)
                      .+..++ .++++..+.+.++++|.|+.+||   ..+.+.|.++|+++ +.+.|+              .||     +..+
T Consensus         2 ~~~~l~-~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~--------------~vd-----~~~~   61 (101)
T cd03003           2 EIVTLD-RGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIG--------------AVN-----CGDD   61 (101)
T ss_pred             CeEEcC-HhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEE--------------EEe-----CCcc
Confidence            345664 67899988888999999999997   45578999999998 567787              566     7778


Q ss_pred             HHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHH
Q psy7942         105 ADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFL  145 (216)
Q Consensus       105 ~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi  145 (216)
                      +++++++++.. |++++|+++. ....|.|.. +.+.|.+|+
T Consensus        62 ~~~~~~~~v~~~Pt~~~~~~g~-~~~~~~G~~-~~~~l~~f~  101 (101)
T cd03003          62 RMLCRSQGVNSYPSLYVFPSGM-NPEKYYGDR-SKESLVKFA  101 (101)
T ss_pred             HHHHHHcCCCccCEEEEEcCCC-CcccCCCCC-CHHHHHhhC
Confidence            89999999986 9999998643 366799999 999999884

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=98.91  E-value=2e-08  Score=72.96  Aligned_cols=96  Identities=8%  Similarity=0.198  Sum_probs=77.8

Q ss_pred             CceeecCHHHHHHhHh-CCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          29 PAKEFTSVDEIKAFIA-DSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~~-~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      .+..+ +.+++++.+. .+++++|.||.+||.   ...+.|.++|.++ +.+.|+              .+|     +..
T Consensus         2 ~v~~l-~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~--------------~vd-----~~~   61 (104)
T cd03004           2 SVITL-TPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVG--------------SVD-----CQK   61 (104)
T ss_pred             cceEc-CHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEE--------------EEE-----CCc
Confidence            45566 4678888764 567899999999984   5678999999988 567888              566     777


Q ss_pred             cHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCC-HHHHHHHH
Q psy7942         104 NADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASD-EAALRKFL  145 (216)
Q Consensus       104 ~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~-~~~l~~fi  145 (216)
                      ++++++++++.. |++++|++..+....|.|.. + .++|.+||
T Consensus        62 ~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~G~~-~~~~~l~~~i  104 (104)
T cd03004          62 YESLCQQANIRAYPTIRLYPGNASKYHSYNGWH-RDADSILEFI  104 (104)
T ss_pred             hHHHHHHcCCCcccEEEEEcCCCCCceEccCCC-CCHHHHHhhC
Confidence            889999999986 99999997645678899988 6 89999986

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=98.89  E-value=2.4e-08  Score=73.24  Aligned_cols=95  Identities=24%  Similarity=0.442  Sum_probs=76.5

Q ss_pred             ceeecCHHHHHHhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhC-------CCceEEecchhhHHHHhhhhcccccee
Q psy7942          30 AKEFTSVDEIKAFIADSKVVVAGLFKDAS---SELAKTFNEIASKV-------DDLVFDASSELAKTFNEIASKVDDLVF   99 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~-------~~~~F~~~~~~~~~~~~~~~~~~~~~~   99 (216)
                      +..++ .++++..++.++.++|.|+.+||   ....+.|.++|..+       +.+.|+              .+|    
T Consensus         3 v~~l~-~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~--------------~vd----   63 (108)
T cd02996           3 IVSLT-SGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWG--------------KVD----   63 (108)
T ss_pred             eEEcC-HhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEE--------------EEE----
Confidence            45564 57899999889999999999997   45567888888764       136777              566    


Q ss_pred             eecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHH
Q psy7942         100 VTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFL  145 (216)
Q Consensus       100 ~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi  145 (216)
                       +..+++++++|++.. |++++|++.......|.|.. +.++|.+||
T Consensus        64 -~d~~~~l~~~~~v~~~Ptl~~~~~g~~~~~~~~g~~-~~~~l~~fi  108 (108)
T cd02996          64 -CDKESDIADRYRINKYPTLKLFRNGMMMKREYRGQR-SVEALAEFV  108 (108)
T ss_pred             -CCCCHHHHHhCCCCcCCEEEEEeCCcCcceecCCCC-CHHHHHhhC
Confidence             777889999999986 99999997554457899998 999999996

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=98.75  E-value=1.4e-07  Score=67.99  Aligned_cols=95  Identities=15%  Similarity=0.252  Sum_probs=75.0

Q ss_pred             ceeecCHHHHHHhHhC-CCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeeccc
Q psy7942          30 AKEFTSVDEIKAFIAD-SKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTN  104 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~-~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~  104 (216)
                      +..+ +.+++++.+.+ +.+++|.|+.+||.   ...+.|.++|.++ +.+.|+              .+|     ...+
T Consensus         2 v~~l-~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~--------------~id-----~~~~   61 (103)
T cd03001           2 VVEL-TDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVG--------------AVD-----ADVH   61 (103)
T ss_pred             eEEc-CHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEE--------------EEE-----Ccch
Confidence            3455 45788887754 55689999999984   5567899999887 567777              455     5667


Q ss_pred             HHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHH
Q psy7942         105 ADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFL  145 (216)
Q Consensus       105 ~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi  145 (216)
                      +++++++++.. |++++|++.......|.|+. +.+.|.+|+
T Consensus        62 ~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~-~~~~l~~~~  102 (103)
T cd03001          62 QSLAQQYGVRGFPTIKVFGAGKNSPQDYQGGR-TAKAIVSAA  102 (103)
T ss_pred             HHHHHHCCCCccCEEEEECCCCcceeecCCCC-CHHHHHHHh
Confidence            88999999987 99999997645677899999 999999997

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=98.69  E-value=2.6e-07  Score=67.42  Aligned_cols=96  Identities=16%  Similarity=0.303  Sum_probs=72.9

Q ss_pred             ceeecCHHHHHHhHhC-CCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecc-
Q psy7942          30 AKEFTSVDEIKAFIAD-SKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTST-  103 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~-~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~-  103 (216)
                      +..++ .++++..+.+ +.+++|.|+.+||.   ...+.|.++|+.+ +.+.|+              .++     +.. 
T Consensus         2 v~~l~-~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~--------------~v~-----~~~~   61 (109)
T cd03002           2 VYELT-PKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVA--------------AVD-----CDED   61 (109)
T ss_pred             eEEcc-hhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEE--------------EEe-----cCcc
Confidence            34554 4678887754 66699999999984   4567899999888 456666              343     444 


Q ss_pred             -cHHHHHhcCCCC-CeEEEEecCC----CCcccccCCCCCHHHHHHHHh
Q psy7942         104 -NADILAEYSVDD-DTVAIFKKFD----EGRVNYEGPASDEAALRKFLS  146 (216)
Q Consensus       104 -~~~v~~~~~v~~-p~i~~~~~~d----e~~~~y~G~~~~~~~l~~fi~  146 (216)
                       +++++++|++.. |++++|++..    .....|.|+. +.+.|.+||.
T Consensus        62 ~~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~~~G~~-~~~~l~~fi~  109 (109)
T cd03002          62 KNKPLCGKYGVQGFPTLKVFRPPKKASKHAVEDYNGER-SAKAIVDFVL  109 (109)
T ss_pred             ccHHHHHHcCCCcCCEEEEEeCCCcccccccccccCcc-CHHHHHHHhC
Confidence             678899999986 9999999764    2356799999 9999999984

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=98.68  E-value=2.2e-07  Score=70.03  Aligned_cols=95  Identities=19%  Similarity=0.331  Sum_probs=71.3

Q ss_pred             ceeecCHHHHHHhHhCCC-eEEEEEecCCChh-------HHHHHHHHHhhC---CCceEEecchhhHHHHhhhhccccce
Q psy7942          30 AKEFTSVDEIKAFIADSK-VVVAGLFKDASSE-------LAKTFNEIASKV---DDLVFDASSELAKTFNEIASKVDDLV   98 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~-v~~V~f~~~~~~~-------~~~~f~~~A~~~---~~~~F~~~~~~~~~~~~~~~~~~~~~   98 (216)
                      +..|+ .+++++.+.+++ ++++.|.+.|+.+       ..+.+.++|..+   ..+.|+              +||   
T Consensus        11 v~~lt-~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~--------------kVD---   72 (120)
T cd03065          11 VIDLN-EKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFG--------------LVD---   72 (120)
T ss_pred             eeeCC-hhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEE--------------EEe---
Confidence            45565 589998887666 5555555556533       234556777665   578898              787   


Q ss_pred             eeecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942          99 FVTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus        99 ~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                        ++.+++++++|++.+ ||+++|+++.  .+.|.|.. +.+.|.+||.+
T Consensus        73 --~d~~~~La~~~~I~~iPTl~lfk~G~--~v~~~G~~-~~~~l~~~l~~  117 (120)
T cd03065          73 --SKKDAKVAKKLGLDEEDSIYVFKDDE--VIEYDGEF-AADTLVEFLLD  117 (120)
T ss_pred             --CCCCHHHHHHcCCccccEEEEEECCE--EEEeeCCC-CHHHHHHHHHH
Confidence              888999999999987 9999999643  45599999 99999999975

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=98.68  E-value=2.7e-07  Score=66.08  Aligned_cols=92  Identities=23%  Similarity=0.455  Sum_probs=74.5

Q ss_pred             HHHHHHhHhCCCeEEEEEecCCChhH---HHHHHHHHhhCC---CceEEecchhhHHHHhhhhccccceeeecccHHHHH
Q psy7942          36 VDEIKAFIADSKVVVAGLFKDASSEL---AKTFNEIASKVD---DLVFDASSELAKTFNEIASKVDDLVFVTSTNADILA  109 (216)
Q Consensus        36 ~~~~~~~~~~~~v~~V~f~~~~~~~~---~~~f~~~A~~~~---~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~  109 (216)
                      .+++++++.++++++|.|+.+||...   .+.|.++|..+.   .+.|+              .+|     +..++++++
T Consensus         3 ~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~--------------~~d-----~~~~~~~~~   63 (102)
T TIGR01126         3 ASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLA--------------KVD-----ATAEKDLAS   63 (102)
T ss_pred             hhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEE--------------EEE-----ccchHHHHH
Confidence            46788888889999999999998433   467888888873   47777              455     667788999


Q ss_pred             hcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         110 EYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       110 ~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      +|++.. |++++|++... ...|.|.. +.+.|..||.++
T Consensus        64 ~~~i~~~P~~~~~~~~~~-~~~~~g~~-~~~~l~~~i~~~  101 (102)
T TIGR01126        64 RFGVSGFPTIKFFPKGKK-PVDYEGGR-DLEAIVEFVNEK  101 (102)
T ss_pred             hCCCCcCCEEEEecCCCc-ceeecCCC-CHHHHHHHHHhc
Confidence            999986 99999997544 67899998 899999999875

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=98.67  E-value=3.9e-07  Score=79.08  Aligned_cols=151  Identities=19%  Similarity=0.292  Sum_probs=102.2

Q ss_pred             ceeecCHHHHHHhHhCCCeEEEEEecCCC--hhHH------HHHHHHHhhC---CCceEEecchhhHHHHhhhhccccce
Q psy7942          30 AKEFTSVDEIKAFIADSKVVVAGLFKDAS--SELA------KTFNEIASKV---DDLVFDASSELAKTFNEIASKVDDLV   98 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~--~~~~------~~f~~~A~~~---~~~~F~~~~~~~~~~~~~~~~~~~~~   98 (216)
                      |..|+ ..++.++++..++.+|+|+.+-.  +...      +.+.++|.+.   ..+.||              .||   
T Consensus        36 Vi~Ln-eKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg--------------~VD---   97 (383)
T PF01216_consen   36 VIDLN-EKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFG--------------MVD---   97 (383)
T ss_dssp             CEEE--TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEE--------------EEE---
T ss_pred             eEEcc-hhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceE--------------Eec---
Confidence            45564 57899999999999999987743  2221      3456776654   688999              455   


Q ss_pred             eeecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCCceeeeCcchHHHhhcc-CCcceEEEE
Q psy7942          99 FVTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGG-EIKSHLLVF  176 (216)
Q Consensus        99 ~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~~~~~~~~~~~~-~~~~~lllf  176 (216)
                        ...+..+++++|+.. ++|.+|+  +++.+.|+|.+ +++.|..||....-..|..++.+.-.+.|+. .-.+-++.+
T Consensus        98 --~~Kd~klAKKLgv~E~~SiyVfk--d~~~IEydG~~-saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGy  172 (383)
T PF01216_consen   98 --SKKDAKLAKKLGVEEEGSIYVFK--DGEVIEYDGER-SADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGY  172 (383)
T ss_dssp             --TTTTHHHHHHHT--STTEEEEEE--TTEEEEE-S---SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE
T ss_pred             --cHHHHHHHHhcCccccCcEEEEE--CCcEEEecCcc-CHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEE
Confidence              778889999999986 9999999  46789999999 9999999999987777888887654444442 101335566


Q ss_pred             EeCCccchhhhhHHHHHHHHhccCceEEEE
Q psy7942         177 FSKAAGHYESHFEPVQTVAKDFREKEEQDE  206 (216)
Q Consensus       177 ~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~  206 (216)
                      +....   ....+.+..+|.+|+.-+.|.-
T Consensus       173 Fk~~~---s~~yk~FeeAAe~F~p~IkFfA  199 (383)
T PF01216_consen  173 FKSED---SEHYKEFEEAAEHFQPYIKFFA  199 (383)
T ss_dssp             -SSTT---SHHHHHHHHHHHHCTTTSEEEE
T ss_pred             eCCCC---cHHHHHHHHHHHhhcCceeEEE
Confidence            65432   3356888999999998887753

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=98.66  E-value=1.6e-07  Score=68.36  Aligned_cols=90  Identities=19%  Similarity=0.327  Sum_probs=70.2

Q ss_pred             ecCHHHHHHhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeec-ccHHHH
Q psy7942          33 FTSVDEIKAFIADSKVVVAGLFKDAS---SELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTS-TNADIL  108 (216)
Q Consensus        33 l~s~~~~~~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t-~~~~v~  108 (216)
                      +++..++.... .+++++|.|+++||   ....+.|.++|+.+..+.|.              .+|     .. .+++++
T Consensus         6 ~~~~~~~~~~~-~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~--------------~vd-----~~~~~~~l~   65 (100)
T cd02999           6 LNIALDLMAFN-REDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHL--------------AIE-----ESSIKPSLL   65 (100)
T ss_pred             hhHHHHHHHhc-CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceE--------------EEE-----CCCCCHHHH
Confidence            44444444432 58889999999997   45578999999988767776              455     44 568899


Q ss_pred             HhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHH
Q psy7942         109 AEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFL  145 (216)
Q Consensus       109 ~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi  145 (216)
                      ++|++.. ||+++|++.  ....|.|.. +.+.|.+||
T Consensus        66 ~~~~V~~~PT~~lf~~g--~~~~~~G~~-~~~~l~~f~  100 (100)
T cd02999          66 SRYGVVGFPTILLFNST--PRVRYNGTR-TLDSLAAFY  100 (100)
T ss_pred             HhcCCeecCEEEEEcCC--ceeEecCCC-CHHHHHhhC
Confidence            9999986 999999975  567899998 999999996

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=98.64  E-value=1.2e-06  Score=69.46  Aligned_cols=123  Identities=21%  Similarity=0.299  Sum_probs=91.2

Q ss_pred             CCCcccCCCC-CChHHHHHHHHhhhCCCceeecCHHHHHHhHhCCCe-EEEEEecCCC----hhHHHHHHHHHhhC-CCc
Q psy7942           3 SCLPGERRGG-RTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKV-VVAGLFKDAS----SELAKTFNEIASKV-DDL   75 (216)
Q Consensus         3 ~g~~~~Y~G~-Rta~~iv~~l~~~~~~~v~~l~s~~~~~~~~~~~~v-~~V~f~~~~~----~~~~~~f~~~A~~~-~~~   75 (216)
                      ++.+..|.|. .+.++|..|+....-|.+..++. +.+..+...... +++.|. +.+    ....+.+.++|+++ +.+
T Consensus        51 ~~~~~~y~~~~~~~~~l~~fI~~~~~P~v~~~t~-~n~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~a~~~~~~~  128 (184)
T PF13848_consen   51 DEKPVVYDGDKFTPEELKKFIKKNSFPLVPELTP-ENFEKLFSSPKPPVLILFD-NKDNESTEAFKKELQDIAKKFKGKI  128 (184)
T ss_dssp             TTSEEEESSSTTSHHHHHHHHHHHSSTSCEEEST-THHHHHHSTSSEEEEEEEE-TTTHHHHHHHHHHHHHHHHCTTTTS
T ss_pred             CCCceecccccCCHHHHHHHHHHhccccccccch-hhHHHHhcCCCceEEEEEE-cCCchhHHHHHHHHHHHHHhcCCeE
Confidence            3567899998 89999999999999999999974 688888887654 555554 332    34456778889888 678


Q ss_pred             eEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCC---CCeEEEEecCCCCc-ccccCCCCCHHHHHHHHhh
Q psy7942          76 VFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVD---DDTVAIFKKFDEGR-VNYEGPASDEAALRKFLST  147 (216)
Q Consensus        76 ~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~---~p~i~~~~~~de~~-~~y~G~~~~~~~l~~fi~~  147 (216)
                      .|.+              +|     ....+.+++.++++   .|+++++....... ..+.|++ +.+.|.+|+.+
T Consensus       129 ~f~~--------------~d-----~~~~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~-~~~~i~~Fl~d  184 (184)
T PF13848_consen  129 NFVY--------------VD-----ADDFPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEI-TPESIEKFLND  184 (184)
T ss_dssp             EEEE--------------EE-----TTTTHHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCG-CHHHHHHHHHH
T ss_pred             EEEE--------------ee-----hHHhHHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCC-CHHHHHHHhcC
Confidence            8872              33     34456788899987   39999999544322 2247888 99999999964

...

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.62  E-value=5.9e-07  Score=63.52  Aligned_cols=91  Identities=29%  Similarity=0.513  Sum_probs=72.9

Q ss_pred             CHHHHHHhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhC---CCceEEecchhhHHHHhhhhccccceeeecccHHHH
Q psy7942          35 SVDEIKAFIADSKVVVAGLFKDAS---SELAKTFNEIASKV---DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADIL  108 (216)
Q Consensus        35 s~~~~~~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~---~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~  108 (216)
                      +.+++++.+.+.+.++|.|+.++|   ....+.|.+++..+   +.+.|+              .++     +..++.++
T Consensus         4 ~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~--------------~v~-----~~~~~~~~   64 (101)
T cd02961           4 TDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVA--------------KVD-----CTANNDLC   64 (101)
T ss_pred             cHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEE--------------Eee-----ccchHHHH
Confidence            357889999888899999999987   45566888888777   567787              444     55568899


Q ss_pred             HhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHH
Q psy7942         109 AEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFL  145 (216)
Q Consensus       109 ~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi  145 (216)
                      ++|+++. |++++|++.......|.|.. +.+.|.+|+
T Consensus        65 ~~~~i~~~Pt~~~~~~~~~~~~~~~g~~-~~~~i~~~~  101 (101)
T cd02961          65 SEYGVRGYPTIKLFPNGSKEPVKYEGPR-TLESLVEFI  101 (101)
T ss_pred             HhCCCCCCCEEEEEcCCCcccccCCCCc-CHHHHHhhC
Confidence            9999987 99999997534577899998 999999885

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=98.60  E-value=1.2e-06  Score=65.13  Aligned_cols=97  Identities=19%  Similarity=0.187  Sum_probs=76.2

Q ss_pred             CceeecCHHHHHHhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecccH
Q psy7942          29 PAKEFTSVDEIKAFIADSKVVVAGLFKDAS---SELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNA  105 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~  105 (216)
                      .+..|++.+++++.+++++.++|.||.+||   ....+.+.++|+.+.++.|.              .||     ...++
T Consensus         5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~--------------~Vd-----~~~~~   65 (113)
T cd02989           5 KYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFI--------------KVN-----AEKAP   65 (113)
T ss_pred             CeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEE--------------EEE-----cccCH
Confidence            356788889999999989999999999987   34567888999888778888              676     77788


Q ss_pred             HHHHhcCCCC-CeEEEEecCCCC-----ccccc--CCCCCHHHHHHHH
Q psy7942         106 DILAEYSVDD-DTVAIFKKFDEG-----RVNYE--GPASDEAALRKFL  145 (216)
Q Consensus       106 ~v~~~~~v~~-p~i~~~~~~de~-----~~~y~--G~~~~~~~l~~fi  145 (216)
                      +++++|++.. |++++|+++..-     .....  +++ +.++|++|+
T Consensus        66 ~l~~~~~v~~vPt~l~fk~G~~v~~~~g~~~~~~~~~~-~~~~~e~~~  112 (113)
T cd02989          66 FLVEKLNIKVLPTVILFKNGKTVDRIVGFEELGGKDDF-STETLEKRL  112 (113)
T ss_pred             HHHHHCCCccCCEEEEEECCEEEEEEECccccCCCCCC-CHHHHHHHh
Confidence            8999999986 999999975321     01122  355 888999886

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=98.59  E-value=2.3e-06  Score=70.62  Aligned_cols=145  Identities=12%  Similarity=0.133  Sum_probs=99.0

Q ss_pred             CCCeEEEEEec---CCC---hhHHHHHHHHHhhCCCce--EEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-
Q psy7942          45 DSKVVVAGLFK---DAS---SELAKTFNEIASKVDDLV--FDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-  115 (216)
Q Consensus        45 ~~~v~~V~f~~---~~~---~~~~~~f~~~A~~~~~~~--F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-  115 (216)
                      .+++.++.|+.   +||   ....+.+.++|..++.+.  +.              .+|     ...+++++++|++.. 
T Consensus        18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v--------------~vd-----~~~~~~l~~~~~V~~~   78 (215)
T TIGR02187        18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIY--------------DFD-----TPEDKEEAEKYGVERV   78 (215)
T ss_pred             CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEE--------------ecC-----CcccHHHHHHcCCCcc
Confidence            35666666777   665   566778888888885543  44              233     336789999999986 


Q ss_pred             CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc--CCCceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHH
Q psy7942         116 DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ--SLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQT  193 (216)
Q Consensus       116 p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~--~~P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~  193 (216)
                      ||+++|+++......|.|.. ..+.+.+||...  .-+.-..+++.+...+-....+..+.+|...+.+..+.....+++
T Consensus        79 Pt~~~f~~g~~~~~~~~G~~-~~~~l~~~i~~~~~~~~~~~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~  157 (215)
T TIGR02187        79 PTTIILEEGKDGGIRYTGIP-AGYEFAALIEDIVRVSQGEPGLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHK  157 (215)
T ss_pred             CEEEEEeCCeeeEEEEeecC-CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHH
Confidence            99999997543234688987 778888888765  222234555555444433332344556888888888888888888


Q ss_pred             HHHhccCceEEEEcCCC
Q psy7942         194 VAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       194 vA~~~r~~~~f~~~d~~  210 (216)
                      ++.++ +++.+..+|..
T Consensus       158 l~~~~-~~i~~~~vD~~  173 (215)
T TIGR02187       158 FALAN-DKILGEMIEAN  173 (215)
T ss_pred             HHHhc-CceEEEEEeCC
Confidence            88885 57887777754

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=98.57  E-value=9.9e-07  Score=63.62  Aligned_cols=93  Identities=19%  Similarity=0.263  Sum_probs=72.6

Q ss_pred             ceeecCHHHHHHhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhCC--CceEEecchhhHHHHhhhhccccceeeeccc
Q psy7942          30 AKEFTSVDEIKAFIADSKVVVAGLFKDAS---SELAKTFNEIASKVD--DLVFDASSELAKTFNEIASKVDDLVFVTSTN  104 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~~--~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~  104 (216)
                      |..|+ .+++++.+++.  .+|.|+.+||   ....+.|.++|..+.  .+.|+              .+|     +..+
T Consensus         3 v~~l~-~~~f~~~~~~~--~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~--------------~vd-----~~~~   60 (101)
T cd02994           3 VVELT-DSNWTLVLEGE--WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVA--------------KVD-----VTQE   60 (101)
T ss_pred             eEEcC-hhhHHHHhCCC--EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEE--------------EEE-----ccCC
Confidence            55664 57888887543  6799999997   456778999998763  56777              566     6677


Q ss_pred             HHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942         105 ADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       105 ~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                      +.++++|++.. |++++|+++  ....|.|.. +.++|.+||.+
T Consensus        61 ~~~~~~~~i~~~Pt~~~~~~g--~~~~~~G~~-~~~~l~~~i~~  101 (101)
T cd02994          61 PGLSGRFFVTALPTIYHAKDG--VFRRYQGPR-DKEDLISFIEE  101 (101)
T ss_pred             HhHHHHcCCcccCEEEEeCCC--CEEEecCCC-CHHHHHHHHhC
Confidence            88999999986 999999863  346789998 99999999863

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>KOG0191|consensus

Probab=98.53  E-value=2.6e-06  Score=76.24  Aligned_cols=152  Identities=18%  Similarity=0.331  Sum_probs=113.6

Q ss_pred             HHHHHhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcC
Q psy7942          37 DEIKAFIADSKVVVAGLFKDAS---SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYS  112 (216)
Q Consensus        37 ~~~~~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~  112 (216)
                      ......+..+...+|-||.+||   ..+..+|.++++.+ ..+.++              .+|     ++.+++++++|+
T Consensus        38 ~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~--------------~vd-----~~~~~~~~~~y~   98 (383)
T KOG0191|consen   38 SFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIG--------------AVD-----CDEHKDLCEKYG   98 (383)
T ss_pred             ccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEE--------------EeC-----chhhHHHHHhcC
Confidence            3334566678899999999987   46677999999888 446777              577     889999999999


Q ss_pred             CCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcC-------CCc-eeeeCcchHHHhhccCCcceEEEEEeCCccc
Q psy7942         113 VDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQS-------LPL-VVEFNHETAQKIFGGEIKSHLLVFFSKAAGH  183 (216)
Q Consensus       113 v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~-------~P~-v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~  183 (216)
                      +.+ |++.+|++. .....|.|.. +.+.+..|+....       .+. +.+++..++..+-......-++.|+.+...+
T Consensus        99 i~gfPtl~~f~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~  176 (383)
T KOG0191|consen   99 IQGFPTLKVFRPG-KKPIDYSGPR-NAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGH  176 (383)
T ss_pred             CccCcEEEEEcCC-CceeeccCcc-cHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHH
Confidence            997 999999986 5678899987 9999999998764       344 5566666665433322123355577777777


Q ss_pred             hhhhhHHHHHHHHhcc--CceEEEEcCC
Q psy7942         184 YESHFEPVQTVAKDFR--EKEEQDEDDD  209 (216)
Q Consensus       184 ~~~~~~~l~~vA~~~r--~~~~f~~~d~  209 (216)
                      ...+...+.++|+.+.  +.+...-.|.
T Consensus       177 ck~l~~~~~~~a~~~~~~~~v~~~~~d~  204 (383)
T KOG0191|consen  177 CKKLAPEWEKLAKLLKSKENVELGKIDA  204 (383)
T ss_pred             hhhcChHHHHHHHHhccCcceEEEeecc
Confidence            8888899999999886  4455555553

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=98.53  E-value=1.1e-06  Score=63.24  Aligned_cols=94  Identities=28%  Similarity=0.463  Sum_probs=70.6

Q ss_pred             ceeecCHHHHHHhHhC-CCeEEEEEecCCCh---hHHHHHHHHHhhCC---CceEEecchhhHHHHhhhhccccceeeec
Q psy7942          30 AKEFTSVDEIKAFIAD-SKVVVAGLFKDASS---ELAKTFNEIASKVD---DLVFDASSELAKTFNEIASKVDDLVFVTS  102 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~-~~v~~V~f~~~~~~---~~~~~f~~~A~~~~---~~~F~~~~~~~~~~~~~~~~~~~~~~~~t  102 (216)
                      |..|+ .+++++.+.+ ++.++|.|+.+||.   ...+.|.+++..+.   .+.|+              .+|     +.
T Consensus         2 v~~l~-~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~--------------~id-----~~   61 (104)
T cd02995           2 VKVVV-GKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIA--------------KMD-----AT   61 (104)
T ss_pred             eEEEc-hhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEE--------------EEe-----Cc
Confidence            55665 4688887654 57889999999974   55679999998873   46777              454     44


Q ss_pred             ccHHHHHhcCCCC-CeEEEEecCC-CCcccccCCCCCHHHHHHHH
Q psy7942         103 TNADILAEYSVDD-DTVAIFKKFD-EGRVNYEGPASDEAALRKFL  145 (216)
Q Consensus       103 ~~~~v~~~~~v~~-p~i~~~~~~d-e~~~~y~G~~~~~~~l~~fi  145 (216)
                      .+ +++..+++.. |++++|++.. .....|.|.. +...|.+||
T Consensus        62 ~~-~~~~~~~~~~~Pt~~~~~~~~~~~~~~~~g~~-~~~~l~~fi  104 (104)
T cd02995          62 AN-DVPSEFVVDGFPTILFFPAGDKSNPIKYEGDR-TLEDLIKFI  104 (104)
T ss_pred             ch-hhhhhccCCCCCEEEEEcCCCcCCceEccCCc-CHHHHHhhC
Confidence            44 5777788765 9999999765 3466799999 999999996

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=98.52  E-value=8.8e-07  Score=63.62  Aligned_cols=92  Identities=26%  Similarity=0.433  Sum_probs=71.3

Q ss_pred             eeecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-C---CceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          31 KEFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKV-D---DLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        31 ~~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~---~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      ..++ .++++..+.+. .++|.|+.+||.   ...+.|.++|+++ +   .+.|+              .+|     +..
T Consensus         3 ~~l~-~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~--------------~vd-----~~~   61 (102)
T cd03005           3 LELT-EDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIA--------------KVD-----CTQ   61 (102)
T ss_pred             eECC-HHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEE--------------EEE-----CCC
Confidence            4554 57888888766 488889999974   4456888898887 3   46777              455     677


Q ss_pred             cHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHH
Q psy7942         104 NADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFL  145 (216)
Q Consensus       104 ~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi  145 (216)
                      +.++++++++.. |++++|++.. ....|.|.. +.+.|.+||
T Consensus        62 ~~~~~~~~~v~~~Pt~~~~~~g~-~~~~~~G~~-~~~~l~~~i  102 (102)
T cd03005          62 HRELCSEFQVRGYPTLLLFKDGE-KVDKYKGTR-DLDSLKEFV  102 (102)
T ss_pred             ChhhHhhcCCCcCCEEEEEeCCC-eeeEeeCCC-CHHHHHhhC
Confidence            788999999986 9999998643 356799998 899999986

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>KOG4277|consensus

Probab=98.52  E-value=8.1e-07  Score=75.94  Aligned_cols=131  Identities=16%  Similarity=0.368  Sum_probs=93.5

Q ss_pred             HhHh--CCCeEEEEEecCCC---hhHHHHHHHHHhhCC----CceEEecchhhHHHHhhhhccccceeeecccHHHHHhc
Q psy7942          41 AFIA--DSKVVVAGLFKDAS---SELAKTFNEIASKVD----DLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEY  111 (216)
Q Consensus        41 ~~~~--~~~v~~V~f~~~~~---~~~~~~f~~~A~~~~----~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~  111 (216)
                      +|+.  +.++.+|-||++||   ..+.+.+.++...+.    -+..|              ++|     +|.=+.++.++
T Consensus        36 kFkdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVG--------------KlD-----aT~f~aiAnef   96 (468)
T KOG4277|consen   36 KFKDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVG--------------KLD-----ATRFPAIANEF   96 (468)
T ss_pred             HhhhcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeec--------------ccc-----cccchhhHhhh
Confidence            4554  57899999999997   455567777776652    23445              566     88888999999


Q ss_pred             CCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCCceeeeCcchHH-HhhccCCcceEEEEEeCCccchhhhhH
Q psy7942         112 SVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQ-KIFGGEIKSHLLVFFSKAAGHYESHFE  189 (216)
Q Consensus       112 ~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~~~~~~~-~~~~~~~~~~lllf~~~~~~~~~~~~~  189 (216)
                      ++++ |+|.+||.  +....|.|++ +.++|..|....+-|++..+++.... .-+.... .+.++|+..+.   ..+.+
T Consensus        97 giqGYPTIk~~kg--d~a~dYRG~R-~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rh-q~ffVf~Gtge---~PL~d  169 (468)
T KOG4277|consen   97 GIQGYPTIKFFKG--DHAIDYRGGR-EKDAIIEFAHRCAAAIIEPINENQIEFEHLQARH-QPFFVFFGTGE---GPLFD  169 (468)
T ss_pred             ccCCCceEEEecC--CeeeecCCCc-cHHHHHHHHHhcccceeeecChhHHHHHHHhhcc-CceEEEEeCCC---CcHHH
Confidence            9998 99999995  5578899999 99999999999999999999984322 2233332 24566665442   23344


Q ss_pred             HHHHHHHh
Q psy7942         190 PVQTVAKD  197 (216)
Q Consensus       190 ~l~~vA~~  197 (216)
                      .+..+|.+
T Consensus       170 ~fidAASe  177 (468)
T KOG4277|consen  170 AFIDAASE  177 (468)
T ss_pred             HHHHHhhh
Confidence            45555543

>PRK10996 thioredoxin 2; Provisional

Probab=98.50  E-value=1.7e-06  Score=66.69  Aligned_cols=93  Identities=19%  Similarity=0.343  Sum_probs=75.0

Q ss_pred             CHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHHHh
Q psy7942          35 SVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAE  110 (216)
Q Consensus        35 s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~  110 (216)
                      +.++++.+++++++++|.|+.+|+.   ...+.|.+++..+ +.+.|+              .+|     ...+++++++
T Consensus        41 ~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~--------------~vd-----~~~~~~l~~~  101 (139)
T PRK10996         41 TGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFV--------------KVN-----TEAERELSAR  101 (139)
T ss_pred             CHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEE--------------EEe-----CCCCHHHHHh
Confidence            5788999998899999999999984   4557899999887 567777              455     5667889999


Q ss_pred             cCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         111 YSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       111 ~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      |++.+ |++++|+++ +....+.|.. +.+.|.+|+...
T Consensus       102 ~~V~~~Ptlii~~~G-~~v~~~~G~~-~~e~l~~~l~~~  138 (139)
T PRK10996        102 FRIRSIPTIMIFKNG-QVVDMLNGAV-PKAPFDSWLNEA  138 (139)
T ss_pred             cCCCccCEEEEEECC-EEEEEEcCCC-CHHHHHHHHHHh
Confidence            99987 999999853 3344568888 899999999864

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=98.50  E-value=1.5e-06  Score=63.88  Aligned_cols=95  Identities=17%  Similarity=0.316  Sum_probs=70.6

Q ss_pred             ceeecCHHHHHHhHh---CCCeEEEEEecCCCh---hHHHHHHHHHhhCC--CceEEecchhhHHHHhhhhccccceeee
Q psy7942          30 AKEFTSVDEIKAFIA---DSKVVVAGLFKDASS---ELAKTFNEIASKVD--DLVFDASSELAKTFNEIASKVDDLVFVT  101 (216)
Q Consensus        30 v~~l~s~~~~~~~~~---~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~--~~~F~~~~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      |..++ .++++.+..   ++++++|.|+.+||.   .+.+.|.++|..+.  .+.|+              .|+     +
T Consensus         3 v~~~~-~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~--------------~vd-----~   62 (109)
T cd02993           3 VVTLS-RAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVA--------------KFN-----A   62 (109)
T ss_pred             ceecc-HHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEE--------------EEE-----C
Confidence            45554 468887763   468999999999974   55678999998883  47777              344     4


Q ss_pred             cc-cHHHHH-hcCCCC-CeEEEEecCCCCcccccCC-CCCHHHHHHHH
Q psy7942         102 ST-NADILA-EYSVDD-DTVAIFKKFDEGRVNYEGP-ASDEAALRKFL  145 (216)
Q Consensus       102 t~-~~~v~~-~~~v~~-p~i~~~~~~de~~~~y~G~-~~~~~~l~~fi  145 (216)
                      .. +..++. .+++.. |++++|++.......|.|+ . +.++|.+||
T Consensus        63 d~~~~~~~~~~~~v~~~Pti~~f~~~~~~~~~y~g~~~-~~~~l~~f~  109 (109)
T cd02993          63 DGEQREFAKEELQLKSFPTILFFPKNSRQPIKYPSEQR-DVDSLLMFV  109 (109)
T ss_pred             CccchhhHHhhcCCCcCCEEEEEcCCCCCceeccCCCC-CHHHHHhhC
Confidence            44 455665 589976 9999999755557789995 6 999999996

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=98.44  E-value=1.9e-06  Score=62.00  Aligned_cols=94  Identities=30%  Similarity=0.470  Sum_probs=72.1

Q ss_pred             eeecCHHHHHHhHhC-CCeEEEEEecCCCh---hHHHHHHHHHhhCC---CceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          31 KEFTSVDEIKAFIAD-SKVVVAGLFKDASS---ELAKTFNEIASKVD---DLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        31 ~~l~s~~~~~~~~~~-~~v~~V~f~~~~~~---~~~~~f~~~A~~~~---~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      ..+++ ++++..+.+ ++.++|.|+.+||.   ...+.|.+++..+.   .+.|+              .+|     +..
T Consensus         3 ~~l~~-~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~--------------~id-----~~~   62 (105)
T cd02998           3 VELTD-SNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIA--------------KVD-----ADE   62 (105)
T ss_pred             EEcch-hcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEE--------------EEE-----CCC
Confidence            34543 677777765 44889999999984   44578888888863   46676              455     556


Q ss_pred             -cHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHH
Q psy7942         104 -NADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFL  145 (216)
Q Consensus       104 -~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi  145 (216)
                       ++++++++++.. |++++|++.......|.|.. +.+.|.+||
T Consensus        63 ~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~-~~~~l~~~i  105 (105)
T cd02998          63 ANKDLAKKYGVSGFPTLKFFPKGSTEPVKYEGGR-DLEDLVKFV  105 (105)
T ss_pred             cchhhHHhCCCCCcCEEEEEeCCCCCccccCCcc-CHHHHHhhC
Confidence             688999999986 99999997655677899998 999999986

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=98.44  E-value=2.1e-06  Score=61.18  Aligned_cols=88  Identities=22%  Similarity=0.372  Sum_probs=67.6

Q ss_pred             HHHHhH-hC-CCeEEEEEecCCC---hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHHHhc
Q psy7942          38 EIKAFI-AD-SKVVVAGLFKDAS---SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEY  111 (216)
Q Consensus        38 ~~~~~~-~~-~~v~~V~f~~~~~---~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~  111 (216)
                      ++++.+ ++ .++++|.|+.+||   ....+.+.+++..+ +.+.|+              .+|     ...+++++++|
T Consensus         2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~--------------~vd-----~~~~~~l~~~~   62 (96)
T cd02956           2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLA--------------KVN-----CDAQPQIAQQF   62 (96)
T ss_pred             ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEE--------------EEe-----ccCCHHHHHHc
Confidence            345555 34 5799999999997   45567888889888 456676              566     77788999999


Q ss_pred             CCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHh
Q psy7942         112 SVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLS  146 (216)
Q Consensus       112 ~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~  146 (216)
                      ++.. |++++|+++ .....|.|.. +.+.|..||.
T Consensus        63 ~i~~~Pt~~~~~~g-~~~~~~~g~~-~~~~l~~~l~   96 (96)
T cd02956          63 GVQALPTVYLFAAG-QPVDGFQGAQ-PEEQLRQMLD   96 (96)
T ss_pred             CCCCCCEEEEEeCC-EEeeeecCCC-CHHHHHHHhC
Confidence            9986 999999853 2345688988 8999999874

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=98.42  E-value=2.6e-06  Score=61.29  Aligned_cols=94  Identities=19%  Similarity=0.339  Sum_probs=71.4

Q ss_pred             ceeecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC---CCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          30 AKEFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKV---DDLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~---~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      +..++ .++++..+++++.++|.|+++||.   ...+.+.+++..+   ..+.|+              .+|     +..
T Consensus         2 ~~~l~-~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~--------------~id-----~~~   61 (104)
T cd02997           2 VVHLT-DEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLA--------------AVD-----CTK   61 (104)
T ss_pred             eEEec-hHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEE--------------EEE-----CCC
Confidence            34554 468888888888999999999984   4456788888776   235565              344     555


Q ss_pred             --cHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHH
Q psy7942         104 --NADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFL  145 (216)
Q Consensus       104 --~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi  145 (216)
                        +..++.++++.. |++++|++.. ....|.|.. +.+.|.+||
T Consensus        62 ~~~~~~~~~~~i~~~Pt~~~~~~g~-~~~~~~g~~-~~~~l~~~l  104 (104)
T cd02997          62 PEHDALKEEYNVKGFPTFKYFENGK-FVEKYEGER-TAEDIIEFM  104 (104)
T ss_pred             CccHHHHHhCCCccccEEEEEeCCC-eeEEeCCCC-CHHHHHhhC
Confidence              778899999975 9999999643 356789998 899999886

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>TIGR01068 thioredoxin thioredoxin

Probab=98.41  E-value=3.8e-06  Score=59.76  Aligned_cols=93  Identities=23%  Similarity=0.345  Sum_probs=71.1

Q ss_pred             CHHHHHHhHhC-CCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHHH
Q psy7942          35 SVDEIKAFIAD-SKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILA  109 (216)
Q Consensus        35 s~~~~~~~~~~-~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~  109 (216)
                      +.+++...+.+ .+.++|.|+.+||.   ...+.|.+++.++ +.+.|+              .+|     ...++.+++
T Consensus         2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~--------------~vd-----~~~~~~~~~   62 (101)
T TIGR01068         2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFV--------------KLN-----VDENPDIAA   62 (101)
T ss_pred             CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEE--------------EEE-----CCCCHHHHH
Confidence            35678887766 45899999999983   4456888888887 468888              455     667788999


Q ss_pred             hcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         110 EYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       110 ~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      +|++.. |++++|+.. .....+.|.. +.+.|.+||..+
T Consensus        63 ~~~v~~~P~~~~~~~g-~~~~~~~g~~-~~~~l~~~l~~~  100 (101)
T TIGR01068        63 KYGIRSIPTLLLFKNG-KEVDRSVGAL-PKAALKQLINKN  100 (101)
T ss_pred             HcCCCcCCEEEEEeCC-cEeeeecCCC-CHHHHHHHHHhh
Confidence            999986 999999853 3344567887 889999999764

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=98.40  E-value=4.1e-06  Score=63.96  Aligned_cols=102  Identities=13%  Similarity=0.196  Sum_probs=77.7

Q ss_pred             CCceeecCHHHHHHhHhCCCeEEEEEecCC---C----hhHHHHHHHHHhhC-CC-ceEEecchhhHHHHhhhhccccce
Q psy7942          28 PPAKEFTSVDEIKAFIADSKVVVAGLFKDA---S----SELAKTFNEIASKV-DD-LVFDASSELAKTFNEIASKVDDLV   98 (216)
Q Consensus        28 ~~v~~l~s~~~~~~~~~~~~v~~V~f~~~~---~----~~~~~~f~~~A~~~-~~-~~F~~~~~~~~~~~~~~~~~~~~~   98 (216)
                      |.+.+|++.+.++..+.++.+++|+|+++.   +    ......|.++|+++ .. +.|.+              +|   
T Consensus         2 ~~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~--------------vd---   64 (130)
T cd02983           2 PEIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLW--------------TE---   64 (130)
T ss_pred             CceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEE--------------Ee---
Confidence            567889999999999988999999999752   1    34567899999999 56 77872              22   


Q ss_pred             eeecccHHHHHhcCCC---CCeEEEEecCCCCcccccCCCCCHHHHHHHHhhcC
Q psy7942          99 FVTSTNADILAEYSVD---DDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQS  149 (216)
Q Consensus        99 ~~~t~~~~v~~~~~v~---~p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~  149 (216)
                        ......+.+.|+++   .|+++++...+.....+.|++ +.++|.+|+....
T Consensus        65 --~~~~~~~~~~fgl~~~~~P~v~i~~~~~~KY~~~~~~~-t~e~i~~Fv~~~l  115 (130)
T cd02983          65 --AGAQLDLEEALNIGGFGYPAMVAINFRKMKFATLKGSF-SEDGINEFLRELS  115 (130)
T ss_pred             --CcccHHHHHHcCCCccCCCEEEEEecccCccccccCcc-CHHHHHHHHHHHH
Confidence              33344588899985   399999987433344478999 9999999998753

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=98.40  E-value=4.9e-06  Score=60.46  Aligned_cols=93  Identities=17%  Similarity=0.313  Sum_probs=69.4

Q ss_pred             eecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhCC--CceEEecchhhHHHHhhhhccccceeeecccHH
Q psy7942          32 EFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKVD--DLVFDASSELAKTFNEIASKVDDLVFVTSTNAD  106 (216)
Q Consensus        32 ~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~--~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~  106 (216)
                      .+.|.++++.+++++++++|.|+++||.   ...+.|.+++..+.  .+.|.              .++     .. +++
T Consensus         3 ~i~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~--------------~vd-----~d-~~~   62 (102)
T cd02948           3 EINNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFA--------------TAE-----AD-TID   62 (102)
T ss_pred             EccCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEE--------------EEe-----CC-CHH
Confidence            4678999999999999999999999984   44568888888873  35676              333     33 678


Q ss_pred             HHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942         107 ILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       107 v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                      ++++|++.. |++++|+++.. .....| . +...|.+||..
T Consensus        63 ~~~~~~v~~~Pt~~~~~~g~~-~~~~~G-~-~~~~~~~~i~~  101 (102)
T cd02948          63 TLKRYRGKCEPTFLFYKNGEL-VAVIRG-A-NAPLLNKTITE  101 (102)
T ss_pred             HHHHcCCCcCcEEEEEECCEE-EEEEec-C-ChHHHHHHHhh
Confidence            899999986 99999995322 233345 3 66888888864

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>PHA02278 thioredoxin-like protein

Probab=98.38  E-value=4.1e-06  Score=61.40  Aligned_cols=90  Identities=11%  Similarity=0.123  Sum_probs=66.5

Q ss_pred             cCHHHHHHhHhCCCeEEEEEecCCChh---HHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeeccc----H
Q psy7942          34 TSVDEIKAFIADSKVVVAGLFKDASSE---LAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTN----A  105 (216)
Q Consensus        34 ~s~~~~~~~~~~~~v~~V~f~~~~~~~---~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~----~  105 (216)
                      ++.++++..++++++++|.|+++||++   ..+.|.+++.++ ....|.              .++     ...+    +
T Consensus         2 ~~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~--------------~vd-----vd~~~~d~~   62 (103)
T PHA02278          2 NSLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPIL--------------TLN-----LDAEDVDRE   62 (103)
T ss_pred             CCHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEE--------------EEE-----CCccccccH
Confidence            567889999988999999999999854   456888888775 345555              232     2222    5


Q ss_pred             HHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHH
Q psy7942         106 DILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKF  144 (216)
Q Consensus       106 ~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~f  144 (216)
                      +++++|++.. ||+++|+++. ......|.. +.+.|.+|
T Consensus        63 ~l~~~~~I~~iPT~i~fk~G~-~v~~~~G~~-~~~~l~~~  100 (103)
T PHA02278         63 KAVKLFDIMSTPVLIGYKDGQ-LVKKYEDQV-TPMQLQEL  100 (103)
T ss_pred             HHHHHCCCccccEEEEEECCE-EEEEEeCCC-CHHHHHhh
Confidence            7899999987 9999999642 234567876 77777775

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=98.36  E-value=4.3e-06  Score=61.92  Aligned_cols=93  Identities=20%  Similarity=0.280  Sum_probs=69.0

Q ss_pred             ceeecCHHHHHHhHhCC---CeEEEEEecCCC---hhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          30 AKEFTSVDEIKAFIADS---KVVVAGLFKDAS---SELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~---~v~~V~f~~~~~---~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      +..+++ +++.+.+.+.   ..++|.|+.+||   ..+.+.+.++|.++.++.|.              .+|     ...
T Consensus         6 v~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~--------------~vd-----~~~   65 (113)
T cd02957           6 VREISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFV--------------KIN-----AEK   65 (113)
T ss_pred             EEEEcH-HHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEE--------------EEE-----chh
Confidence            556776 7888877655   789999999997   45678999999999778887              455     444


Q ss_pred             cHHHHHhcCCCC-CeEEEEecCCCCcccccC-------CCCCHHHHHHHH
Q psy7942         104 NADILAEYSVDD-DTVAIFKKFDEGRVNYEG-------PASDEAALRKFL  145 (216)
Q Consensus       104 ~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G-------~~~~~~~l~~fi  145 (216)
                      + .++++|++.. |++++|+++.. ...+.|       ++ +.+.|++|+
T Consensus        66 ~-~l~~~~~i~~~Pt~~~f~~G~~-v~~~~G~~~~~~~~~-~~~~l~~~l  112 (113)
T cd02957          66 A-FLVNYLDIKVLPTLLVYKNGEL-IDNIVGFEELGGDDF-TTEDLEKFL  112 (113)
T ss_pred             h-HHHHhcCCCcCCEEEEEECCEE-EEEEecHHHhCCCCC-CHHHHHHHh
Confidence            4 8899999975 99999997432 223333       34 777788775

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>PTZ00051 thioredoxin; Provisional

Probab=98.36  E-value=5.3e-06  Score=59.28  Aligned_cols=91  Identities=19%  Similarity=0.328  Sum_probs=69.5

Q ss_pred             ceeecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecccHH
Q psy7942          30 AKEFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNAD  106 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~  106 (216)
                      +..+++.++++++++.++.++|.|+.+||.   ...+.|.+++.++.++.|.              .+|     ...+++
T Consensus         2 v~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~--------------~vd-----~~~~~~   62 (98)
T PTZ00051          2 VHIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFV--------------KVD-----VDELSE   62 (98)
T ss_pred             eEEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEE--------------EEE-----CcchHH
Confidence            567889999999999999999999999984   4456788888888778887              454     555678


Q ss_pred             HHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHH
Q psy7942         107 ILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALR  142 (216)
Q Consensus       107 v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~  142 (216)
                      ++++|++.. |++++|+++ .....+.|.  ..++|.
T Consensus        63 ~~~~~~v~~~Pt~~~~~~g-~~~~~~~G~--~~~~~~   96 (98)
T PTZ00051         63 VAEKENITSMPTFKVFKNG-SVVDTLLGA--NDEALK   96 (98)
T ss_pred             HHHHCCCceeeEEEEEeCC-eEEEEEeCC--CHHHhh
Confidence            999999986 999999853 223456664  344443

>PRK09381 trxA thioredoxin; Provisional

Probab=98.33  E-value=9e-06  Score=59.41  Aligned_cols=98  Identities=18%  Similarity=0.340  Sum_probs=74.2

Q ss_pred             CceeecCHHHHHH-hHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          29 PAKEFTSVDEIKA-FIADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        29 ~v~~l~s~~~~~~-~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      .+..++. +++++ +++.++.++|.|+.+||.   ...+.|.+++.++ +.+.|+              .+|     ...
T Consensus         4 ~v~~~~~-~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~--------------~vd-----~~~   63 (109)
T PRK09381          4 KIIHLTD-DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVA--------------KLN-----IDQ   63 (109)
T ss_pred             cceeeCh-hhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEE--------------EEE-----CCC
Confidence            3566654 56765 566688899999999974   4567889999988 567777              455     666


Q ss_pred             cHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         104 NADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       104 ~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ++.++++|++.. |++++|++. .....+.|.. +.+.|..||..+
T Consensus        64 ~~~~~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~-~~~~l~~~i~~~  107 (109)
T PRK09381         64 NPGTAPKYGIRGIPTLLLFKNG-EVAATKVGAL-SKGQLKEFLDAN  107 (109)
T ss_pred             ChhHHHhCCCCcCCEEEEEeCC-eEEEEecCCC-CHHHHHHHHHHh
Confidence            788899999986 999999853 2234578888 889999999764

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=98.33  E-value=7.7e-06  Score=74.73  Aligned_cols=99  Identities=14%  Similarity=0.265  Sum_probs=75.3

Q ss_pred             CCceeecCHHHHHHhHh---CCCeEEEEEecCCC---hhHHHHHHHHHhhC-C-CceEEecchhhHHHHhhhhcccccee
Q psy7942          28 PPAKEFTSVDEIKAFIA---DSKVVVAGLFKDAS---SELAKTFNEIASKV-D-DLVFDASSELAKTFNEIASKVDDLVF   99 (216)
Q Consensus        28 ~~v~~l~s~~~~~~~~~---~~~v~~V~f~~~~~---~~~~~~f~~~A~~~-~-~~~F~~~~~~~~~~~~~~~~~~~~~~   99 (216)
                      +.|..|+ .+++++.++   .+++++|.||.+||   ..+.+.|.++|.++ + .+.|+              .|+    
T Consensus       351 ~~Vv~L~-~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~--------------kVd----  411 (463)
T TIGR00424       351 NNVVSLS-RPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVA--------------KFR----  411 (463)
T ss_pred             CCeEECC-HHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEE--------------EEE----
Confidence            3455665 568998875   68899999999997   45567899999988 3 36777              343    


Q ss_pred             eecccH-HHH-HhcCCCC-CeEEEEecCCCCccccc-CCCCCHHHHHHHHhh
Q psy7942         100 VTSTNA-DIL-AEYSVDD-DTVAIFKKFDEGRVNYE-GPASDEAALRKFLST  147 (216)
Q Consensus       100 ~~t~~~-~v~-~~~~v~~-p~i~~~~~~de~~~~y~-G~~~~~~~l~~fi~~  147 (216)
                       +..++ .++ ++|+|.. |++++|++....+..|. |.. +.++|..||+.
T Consensus       412 -vD~~~~~~~~~~~~I~~~PTii~Fk~g~~~~~~Y~~g~R-~~e~L~~Fv~~  461 (463)
T TIGR00424       412 -ADGDQKEFAKQELQLGSFPTILFFPKHSSRPIKYPSEKR-DVDSLMSFVNL  461 (463)
T ss_pred             -CCCCccHHHHHHcCCCccceEEEEECCCCCceeCCCCCC-CHHHHHHHHHh
Confidence             44443 344 6899986 99999998765678898 477 99999999975

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>PLN02309 5'-adenylylsulfate reductase

Probab=98.32  E-value=7.4e-06  Score=74.78  Aligned_cols=99  Identities=14%  Similarity=0.276  Sum_probs=76.9

Q ss_pred             CceeecCHHHHHHhHh---CCCeEEEEEecCCC---hhHHHHHHHHHhhC--CCceEEecchhhHHHHhhhhccccceee
Q psy7942          29 PAKEFTSVDEIKAFIA---DSKVVVAGLFKDAS---SELAKTFNEIASKV--DDLVFDASSELAKTFNEIASKVDDLVFV  100 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~~---~~~v~~V~f~~~~~---~~~~~~f~~~A~~~--~~~~F~~~~~~~~~~~~~~~~~~~~~~~  100 (216)
                      .|..|+ .+++++++.   .+++++|.||.+||   ..+.+.|.++|.++  ..+.|+              .+|     
T Consensus       346 ~Vv~Lt-~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~--------------kVD-----  405 (457)
T PLN02309        346 NVVALS-RAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVA--------------KFR-----  405 (457)
T ss_pred             CcEECC-HHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEE--------------EEE-----
Confidence            455564 578888764   68899999999997   45567999999988  347777              454     


Q ss_pred             ec-ccHHHHH-hcCCCC-CeEEEEecCCCCcccccC-CCCCHHHHHHHHhhc
Q psy7942         101 TS-TNADILA-EYSVDD-DTVAIFKKFDEGRVNYEG-PASDEAALRKFLSTQ  148 (216)
Q Consensus       101 ~t-~~~~v~~-~~~v~~-p~i~~~~~~de~~~~y~G-~~~~~~~l~~fi~~~  148 (216)
                      +. .+++++. +|+|.. |+|++|++....+..|.| .. +.++|..||+..
T Consensus       406 ~d~~~~~la~~~~~I~~~PTil~f~~g~~~~v~Y~~~~R-~~~~L~~fv~~~  456 (457)
T PLN02309        406 ADGDQKEFAKQELQLGSFPTILLFPKNSSRPIKYPSEKR-DVDSLLSFVNSL  456 (457)
T ss_pred             CCCcchHHHHhhCCCceeeEEEEEeCCCCCeeecCCCCc-CHHHHHHHHHHh
Confidence            55 5567775 699986 999999987666788985 67 999999999863

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=98.32  E-value=6.8e-06  Score=60.75  Aligned_cols=92  Identities=5%  Similarity=0.109  Sum_probs=69.4

Q ss_pred             CHHHHHH-hHh--CCCeEEEEEecCCCh---hHHHHHHHHHhhCC--CceEEecchhhHHHHhhhhccccceeeecccHH
Q psy7942          35 SVDEIKA-FIA--DSKVVVAGLFKDASS---ELAKTFNEIASKVD--DLVFDASSELAKTFNEIASKVDDLVFVTSTNAD  106 (216)
Q Consensus        35 s~~~~~~-~~~--~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~--~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~  106 (216)
                      +.+++++ .+.  .+++++|.|+.+||.   ...+.|.++++++.  .+.|+              .+|     +..++.
T Consensus        10 ~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~--------------~vd-----~d~~~~   70 (111)
T cd02963          10 TFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIA--------------TVN-----AGHERR   70 (111)
T ss_pred             eHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEE--------------EEe-----ccccHH
Confidence            3455653 443  578999999999984   44678899999883  57777              455     666788


Q ss_pred             HHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942         107 ILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       107 v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                      ++.++++.. |++++|++. .....+.|.. +.+.|.+||.+
T Consensus        71 l~~~~~V~~~Pt~~i~~~g-~~~~~~~G~~-~~~~l~~~i~~  110 (111)
T cd02963          71 LARKLGAHSVPAIVGIING-QVTFYHDSSF-TKQHVVDFVRK  110 (111)
T ss_pred             HHHHcCCccCCEEEEEECC-EEEEEecCCC-CHHHHHHHHhc
Confidence            999999986 999999853 3334457888 88999999875

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=98.27  E-value=6.6e-06  Score=58.88  Aligned_cols=87  Identities=22%  Similarity=0.326  Sum_probs=61.8

Q ss_pred             ceeecCHHHHHHhHhCCCeEEEEEecCCChhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHH
Q psy7942          30 AKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADIL  108 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~  108 (216)
                      ++++.+.+++.. +...+-.+||||.+.+++.++.|..||..+ +++.|.+             .++         . +.
T Consensus         1 Ikef~~~~eL~~-id~~kr~iIgYF~~~~~~eY~~f~kvA~~lr~dC~F~v-------------~~G---------~-~~   56 (91)
T cd03070           1 IKEFRNLDELNN-VDRSKRNIIGYFESKDSDEYDNFRKVANILRDDCSFLV-------------GFG---------D-VT   56 (91)
T ss_pred             CceecCHHHHHh-hCcCCceEEEEEcCCCChhHHHHHHHHHHHhhcCeEEE-------------Eec---------c-cc
Confidence            456788888888 677889999999999999999999999998 7887762             111         1 11


Q ss_pred             HhcCCCCCeEEEEecC-CCCcccccCCCCCHHH
Q psy7942         109 AEYSVDDDTVAIFKKF-DEGRVNYEGPASDEAA  140 (216)
Q Consensus       109 ~~~~v~~p~i~~~~~~-de~~~~y~G~~~~~~~  140 (216)
                      ....-.++.+++||+. .+....|.|++++.+.
T Consensus        57 ~~~~~~~~~~i~frp~~~~~~~~y~G~~tn~~~   89 (91)
T cd03070          57 KPERPPGDNIIYFPPGHNAPDMVYLGSLTNFDL   89 (91)
T ss_pred             ccccCCCCCeEEECCCCCCCceEEccCCCChhh
Confidence            1122234677778864 3445789999855443

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=98.27  E-value=1.5e-06  Score=64.55  Aligned_cols=57  Identities=21%  Similarity=0.120  Sum_probs=49.0

Q ss_pred             eeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHh---ccCceEEEEcCCCCC
Q psy7942         153 VVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKD---FREKEEQDEDDDQPK  212 (216)
Q Consensus       153 v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~---~r~~~~f~~~d~~~~  212 (216)
                      |+++|.+|+..|++++++.++++|   +.++.+.+.+.++++|++   ||++++|+++|....
T Consensus         1 ~~e~t~e~~~~~~~~~~~~~~l~f---~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~   60 (111)
T cd03072           1 VREITFENAEELTEEGLPFLILFH---DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKF   60 (111)
T ss_pred             CcccccccHHHHhcCCCCeEEEEe---cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHh
Confidence            578999999999999987766656   445678999999999999   999999999997654

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>KOG0191|consensus

Probab=98.27  E-value=8.7e-06  Score=72.83  Aligned_cols=128  Identities=18%  Similarity=0.347  Sum_probs=94.6

Q ss_pred             CCcccCCCCCChHHHHHHHHhhhCCCceeec-------CHHHHHHhH-hCCCeEEEEEecCCCh---hHHHHHHHHHhhC
Q psy7942           4 CLPGERRGGRTAEDIVNWLLKKTGPPAKEFT-------SVDEIKAFI-ADSKVVVAGLFKDASS---ELAKTFNEIASKV   72 (216)
Q Consensus         4 g~~~~Y~G~Rta~~iv~~l~~~~~~~v~~l~-------s~~~~~~~~-~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~   72 (216)
                      ..+.+|.|.++++.+.+|+.+.+.+.+..+.       ...++.... ..+...+|.||.+||.   .+..+|.++|..+
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~  191 (383)
T KOG0191|consen  112 KKPIDYSGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLL  191 (383)
T ss_pred             CceeeccCcccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHh
Confidence            3689999999999999999999987654322       124444443 3577788889999974   4467888988866


Q ss_pred             ---CCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942          73 ---DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus        73 ---~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                         ..+..+              .+|     ++.+..++.++++.. |++++|++.++....|.|.+ +.++|.+|+...
T Consensus       192 ~~~~~v~~~--------------~~d-----~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R-~~~~i~~~v~~~  251 (383)
T KOG0191|consen  192 KSKENVELG--------------KID-----ATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLR-DSDSIVSFVEKK  251 (383)
T ss_pred             ccCcceEEE--------------eec-----cchHHHHhhhhcccCCceEEEecCCCcccccccccc-cHHHHHHHHHhh
Confidence               344555              344     556778899999986 99999998555234456677 999999999987


Q ss_pred             CCC
Q psy7942         149 SLP  151 (216)
Q Consensus       149 ~~P  151 (216)
                      ..+
T Consensus       252 ~~~  254 (383)
T KOG0191|consen  252 ERR  254 (383)
T ss_pred             cCC
Confidence            655

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=98.26  E-value=9.3e-06  Score=67.62  Aligned_cols=97  Identities=11%  Similarity=0.223  Sum_probs=76.1

Q ss_pred             CceeecCHHHHHHhHhC-----CCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhcccccee
Q psy7942          29 PAKEFTSVDEIKAFIAD-----SKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVF   99 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~~~-----~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~   99 (216)
                      .+..+ +.+++++++..     .++++|.||.+||.   ...+.|.++|+.+ +.+.|+              .+|    
T Consensus        31 ~Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~--------------~VD----   91 (224)
T PTZ00443         31 ALVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVA--------------DLD----   91 (224)
T ss_pred             CcEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEE--------------Eec----
Confidence            35566 46788888753     47899999999984   4567899999988 567787              566    


Q ss_pred             eecccHHHHHhcCCCC-CeEEEEecCCCCcccc-cCCCCCHHHHHHHHhhc
Q psy7942         100 VTSTNADILAEYSVDD-DTVAIFKKFDEGRVNY-EGPASDEAALRKFLSTQ  148 (216)
Q Consensus       100 ~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y-~G~~~~~~~l~~fi~~~  148 (216)
                       ++.+++++++|++.. |++++|++.  ....| .|.. +.++|.+|+..+
T Consensus        92 -~~~~~~l~~~~~I~~~PTl~~f~~G--~~v~~~~G~~-s~e~L~~fi~~~  138 (224)
T PTZ00443         92 -ATRALNLAKRFAIKGYPTLLLFDKG--KMYQYEGGDR-STEKLAAFALGD  138 (224)
T ss_pred             -CcccHHHHHHcCCCcCCEEEEEECC--EEEEeeCCCC-CHHHHHHHHHHH
Confidence             778889999999986 999999953  34444 5677 999999999776

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=98.22  E-value=1.5e-05  Score=57.80  Aligned_cols=90  Identities=16%  Similarity=0.180  Sum_probs=65.0

Q ss_pred             HHHHHhHhCCCeEEEEEecCCChhHH---HHH---HHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecc----cH
Q psy7942          37 DEIKAFIADSKVVVAGLFKDASSELA---KTF---NEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTST----NA  105 (216)
Q Consensus        37 ~~~~~~~~~~~v~~V~f~~~~~~~~~---~~f---~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~----~~  105 (216)
                      +++++.++++++++|.|+.+||....   ..+   .+++..+ +.+.|.              .+|     ...    .+
T Consensus         2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~--------------~vd-----~~~~~~~~~   62 (104)
T cd02953           2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLL--------------RAD-----WTKNDPEIT   62 (104)
T ss_pred             HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEE--------------EEe-----cCCCCHHHH
Confidence            46778888999999999999985433   233   3556666 366666              343     333    46


Q ss_pred             HHHHhcCCCC-CeEEEEec-CCCCcccccCCCCCHHHHHHHHh
Q psy7942         106 DILAEYSVDD-DTVAIFKK-FDEGRVNYEGPASDEAALRKFLS  146 (216)
Q Consensus       106 ~v~~~~~v~~-p~i~~~~~-~de~~~~y~G~~~~~~~l~~fi~  146 (216)
                      +++++|++.. |++++|++ ..+....+.|.. +.+.|.+||+
T Consensus        63 ~~~~~~~i~~~Pti~~~~~~~g~~~~~~~G~~-~~~~l~~~l~  104 (104)
T cd02953          63 ALLKRFGVFGPPTYLFYGPGGEPEPLRLPGFL-TADEFLEALE  104 (104)
T ss_pred             HHHHHcCCCCCCEEEEECCCCCCCCccccccc-CHHHHHHHhC
Confidence            7889999986 99999996 334456678888 8899998874

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>KOG0910|consensus

Probab=98.22  E-value=9.8e-06  Score=62.86  Aligned_cols=96  Identities=20%  Similarity=0.329  Sum_probs=76.3

Q ss_pred             eecCHHHHHH-hHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHH
Q psy7942          32 EFTSVDEIKA-FIADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNAD  106 (216)
Q Consensus        32 ~l~s~~~~~~-~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~  106 (216)
                      .+.+.+++++ ++++..+++|-|++.||+   .+.+...+++..+ ..+.|+              .+|     ...+.+
T Consensus        46 ~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~--------------kvd-----tD~~~e  106 (150)
T KOG0910|consen   46 NVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLY--------------KVD-----TDEHPE  106 (150)
T ss_pred             cccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEE--------------EEc-----cccccc
Confidence            3446777765 667888999999999984   5577899999887 778888              566     667788


Q ss_pred             HHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         107 ILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       107 v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ++.+|+|.. |++++|++++. ...+-|-. +.+.|.+||++.
T Consensus       107 la~~Y~I~avPtvlvfknGe~-~d~~vG~~-~~~~l~~~i~k~  147 (150)
T KOG0910|consen  107 LAEDYEISAVPTVLVFKNGEK-VDRFVGAV-PKEQLRSLIKKF  147 (150)
T ss_pred             hHhhcceeeeeEEEEEECCEE-eeeecccC-CHHHHHHHHHHH
Confidence            999999985 99999998543 45677887 888899998763

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=98.19  E-value=1.9e-05  Score=57.36  Aligned_cols=89  Identities=19%  Similarity=0.406  Sum_probs=67.2

Q ss_pred             HHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhCC----CceEEecchhhHHHHhhhhccccceeeecccHHHHH
Q psy7942          37 DEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKVD----DLVFDASSELAKTFNEIASKVDDLVFVTSTNADILA  109 (216)
Q Consensus        37 ~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~----~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~  109 (216)
                      +++++. ..+++++|.|+.+||.   ...+.|.+++..+.    .+.++              .+|     +...+++++
T Consensus         7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~--------------~vd-----~~~~~~~~~   66 (104)
T cd03000           7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVG--------------KLD-----ATAYSSIAS   66 (104)
T ss_pred             hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEE--------------EEE-----CccCHhHHh
Confidence            566665 4567999999999984   44568888888762    35565              344     556778999


Q ss_pred             hcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         110 EYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       110 ~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ++++.. |++++|++  +....|.|.. +.+.|.+|++..
T Consensus        67 ~~~I~~~Pt~~l~~~--~~~~~~~G~~-~~~~l~~~~~~~  103 (104)
T cd03000          67 EFGVRGYPTIKLLKG--DLAYNYRGPR-TKDDIVEFANRV  103 (104)
T ss_pred             hcCCccccEEEEEcC--CCceeecCCC-CHHHHHHHHHhh
Confidence            999986 99999974  3456689998 999999999763

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=98.18  E-value=3.2e-05  Score=56.32  Aligned_cols=90  Identities=18%  Similarity=0.217  Sum_probs=65.8

Q ss_pred             CHHHHHHhHhC--CCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeeccc---HH
Q psy7942          35 SVDEIKAFIAD--SKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTN---AD  106 (216)
Q Consensus        35 s~~~~~~~~~~--~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~---~~  106 (216)
                      |.+++++.+.+  +++++|.|+++||.   ...+.|.+++..++++.|.              .|+     ...+   ++
T Consensus         2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~--------------~vd-----~d~~~~~~~   62 (103)
T cd02985           2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFL--------------LVN-----GDENDSTME   62 (103)
T ss_pred             CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEE--------------EEE-----CCCChHHHH
Confidence            56788888864  78999999999984   4567899999888777787              343     3333   36


Q ss_pred             HHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHh
Q psy7942         107 ILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLS  146 (216)
Q Consensus       107 v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~  146 (216)
                      ++++|++.. |++++|+++. ....+.|.  ....|.+-|.
T Consensus        63 l~~~~~V~~~Pt~~~~~~G~-~v~~~~G~--~~~~l~~~~~  100 (103)
T cd02985          63 LCRREKIIEVPHFLFYKDGE-KIHEEEGI--GPDELIGDVL  100 (103)
T ss_pred             HHHHcCCCcCCEEEEEeCCe-EEEEEeCC--CHHHHHHHHH
Confidence            889999986 9999998532 24567775  4566666554

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=98.11  E-value=4.9e-05  Score=54.02  Aligned_cols=89  Identities=17%  Similarity=0.323  Sum_probs=66.0

Q ss_pred             CHHHHHHhHhCC--CeEEEEEecCCC---hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHH
Q psy7942          35 SVDEIKAFIADS--KVVVAGLFKDAS---SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADIL  108 (216)
Q Consensus        35 s~~~~~~~~~~~--~v~~V~f~~~~~---~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~  108 (216)
                      |.+++++.+.+.  +.++|.|+.+||   ....+.|.+++.++ ..+.|.              .+|     ....++++
T Consensus         1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~--------------~vd-----~~~~~~~~   61 (97)
T cd02984           1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFL--------------SIE-----AEELPEIS   61 (97)
T ss_pred             CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEE--------------EEc-----cccCHHHH
Confidence            457888888876  999999999998   45567888888884 677777              455     55677899


Q ss_pred             HhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHH
Q psy7942         109 AEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFL  145 (216)
Q Consensus       109 ~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi  145 (216)
                      ++|++.. |++++|+++ .....+.|.  +.+.|.+.|
T Consensus        62 ~~~~i~~~Pt~~~~~~g-~~~~~~~g~--~~~~l~~~~   96 (97)
T cd02984          62 EKFEITAVPTFVFFRNG-TIVDRVSGA--DPKELAKKV   96 (97)
T ss_pred             HhcCCccccEEEEEECC-EEEEEEeCC--CHHHHHHhh
Confidence            9999986 999999853 222334553  567777765

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=98.11  E-value=2.8e-05  Score=53.58  Aligned_cols=88  Identities=26%  Similarity=0.391  Sum_probs=65.9

Q ss_pred             HHHHhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCC
Q psy7942          38 EIKAFIADSKVVVAGLFKDAS---SELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVD  114 (216)
Q Consensus        38 ~~~~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~  114 (216)
                      ++++.+..+++++|.|+.++|   ....+.+.+++.+.+++.|+              .++     ...++++++.+++.
T Consensus         2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~--------------~i~-----~~~~~~~~~~~~v~   62 (93)
T cd02947           2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFV--------------KVD-----VDENPELAEEYGVR   62 (93)
T ss_pred             chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEE--------------EEE-----CCCChhHHHhcCcc
Confidence            456677777888999999987   45566777777776677776              333     44567899999997


Q ss_pred             C-CeEEEEecCCCCcccccCCCCCHHHHHHHHh
Q psy7942         115 D-DTVAIFKKFDEGRVNYEGPASDEAALRKFLS  146 (216)
Q Consensus       115 ~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~  146 (216)
                      . |++++|++. +....+.|.. +.+.|.+||.
T Consensus        63 ~~P~~~~~~~g-~~~~~~~g~~-~~~~l~~~i~   93 (93)
T cd02947          63 SIPTFLFFKNG-KEVDRVVGAD-PKEELEEFLE   93 (93)
T ss_pred             cccEEEEEECC-EEEEEEecCC-CHHHHHHHhC
Confidence            6 999999864 3355677877 7889999874

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=98.09  E-value=1.8e-05  Score=59.05  Aligned_cols=70  Identities=26%  Similarity=0.246  Sum_probs=57.1

Q ss_pred             HHHHHHhHh--CCCeEEEEEecCCCh---hHHHHHHHHHhhCC-CceEEecchhhHHHHhhhhccccceeeecccHHHHH
Q psy7942          36 VDEIKAFIA--DSKVVVAGLFKDASS---ELAKTFNEIASKVD-DLVFDASSELAKTFNEIASKVDDLVFVTSTNADILA  109 (216)
Q Consensus        36 ~~~~~~~~~--~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~-~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~  109 (216)
                      .+++++.+.  .+++++|-|+++||.   .+.+.|.++|.++. .+.|.              +||     ...++++++
T Consensus         2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~--------------kVD-----vD~~~~la~   62 (114)
T cd02954           2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIY--------------LVD-----IDEVPDFNK   62 (114)
T ss_pred             HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEE--------------EEE-----CCCCHHHHH
Confidence            467777776  578899999999985   44578999999984 46787              666     677899999


Q ss_pred             hcCCCC-CeEEEEecC
Q psy7942         110 EYSVDD-DTVAIFKKF  124 (216)
Q Consensus       110 ~~~v~~-p~i~~~~~~  124 (216)
                      +|++.. ||+++|+++
T Consensus        63 ~~~V~~iPTf~~fk~G   78 (114)
T cd02954          63 MYELYDPPTVMFFFRN   78 (114)
T ss_pred             HcCCCCCCEEEEEECC
Confidence            999986 999999964

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.09  E-value=5.4e-05  Score=54.43  Aligned_cols=83  Identities=22%  Similarity=0.343  Sum_probs=61.6

Q ss_pred             CCCeEEEEEecCCC---hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCC--C-Ce
Q psy7942          45 DSKVVVAGLFKDAS---SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVD--D-DT  117 (216)
Q Consensus        45 ~~~v~~V~f~~~~~---~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~--~-p~  117 (216)
                      ....+++.|+.+++   ....+.|.++|+++ +.+.|+              .+|     ....+.+++.+++.  . |+
T Consensus        11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~--------------~vd-----~~~~~~~~~~~~i~~~~~P~   71 (103)
T cd02982          11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFV--------------VVD-----ADDFGRHLEYFGLKEEDLPV   71 (103)
T ss_pred             cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEE--------------EEc-----hHhhHHHHHHcCCChhhCCE
Confidence            35677888887776   45677999999999 678888              344     44456789999997  4 99


Q ss_pred             EEEEecCCCCccccc-CCCCCHHHHHHHHhh
Q psy7942         118 VAIFKKFDEGRVNYE-GPASDEAALRKFLST  147 (216)
Q Consensus       118 i~~~~~~de~~~~y~-G~~~~~~~l~~fi~~  147 (216)
                      +++++..++....+. |.+ +.+.|.+||..
T Consensus        72 ~~~~~~~~~~k~~~~~~~~-~~~~l~~fi~~  101 (103)
T cd02982          72 IAIINLSDGKKYLMPEEEL-TAESLEEFVED  101 (103)
T ss_pred             EEEEecccccccCCCcccc-CHHHHHHHHHh
Confidence            999997433344444 445 88999999975

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=98.06  E-value=2.5e-05  Score=58.01  Aligned_cols=101  Identities=16%  Similarity=0.150  Sum_probs=72.1

Q ss_pred             HHHHHHhhhCCCceeecCHHHHHHhHhCCCeEEEEEecCC--C---hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhh
Q psy7942          18 IVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDA--S---SELAKTFNEIASKV-DDLVFDASSELAKTFNEIA   91 (216)
Q Consensus        18 iv~~l~~~~~~~v~~l~s~~~~~~~~~~~~v~~V~f~~~~--~---~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~   91 (216)
                      +|.++....+-+  .+ +..+++++++.+.+++|-|+++|  +   ....+.|.++|+++ +.+.|+             
T Consensus         2 ~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~-------------   65 (111)
T cd02965           2 LVARLQTRHGWP--RV-DAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAA-------------   65 (111)
T ss_pred             HhHHHHHhcCCc--cc-ccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEE-------------
Confidence            344454444322  33 45778888888899999999986  3   56678999999999 456777             


Q ss_pred             hccccceeeecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHH
Q psy7942          92 SKVDDLVFVTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALR  142 (216)
Q Consensus        92 ~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~  142 (216)
                       .++     ...+++++.+|+|.. ||+++|+++ +....+.|.. +.+.+.
T Consensus        66 -kVd-----id~~~~la~~f~V~sIPTli~fkdG-k~v~~~~G~~-~~~e~~  109 (111)
T cd02965          66 -VVG-----RADEQALAARFGVLRTPALLFFRDG-RYVGVLAGIR-DWDEYV  109 (111)
T ss_pred             -EEE-----CCCCHHHHHHcCCCcCCEEEEEECC-EEEEEEeCcc-CHHHHh
Confidence             455     667789999999986 999999964 2234566766 555543

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=98.04  E-value=6e-05  Score=60.42  Aligned_cols=98  Identities=18%  Similarity=0.248  Sum_probs=71.2

Q ss_pred             CceeecCHHHHHHhHhCC---CeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeec
Q psy7942          29 PAKEFTSVDEIKAFIADS---KVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTS  102 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~~~~---~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t  102 (216)
                      .+..|++.+++.+.+...   .+++|-||.+||.   .+.+.+.++|.+++.+.|.              +|+     ..
T Consensus        63 ~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~--------------kVd-----~d  123 (175)
T cd02987          63 KVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFC--------------KIR-----AS  123 (175)
T ss_pred             eEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEE--------------EEe-----cc
Confidence            356787768888877653   3899999999974   4467899999999888898              454     33


Q ss_pred             ccHHHHHhcCCCC-CeEEEEecCCCCcccc-------cCCCCCHHHHHHHHhhc
Q psy7942         103 TNADILAEYSVDD-DTVAIFKKFDEGRVNY-------EGPASDEAALRKFLSTQ  148 (216)
Q Consensus       103 ~~~~v~~~~~v~~-p~i~~~~~~de~~~~y-------~G~~~~~~~l~~fi~~~  148 (216)
                      .. .++.+|++.. |++++|+++.. ...+       ..++ +.+.|+.|+..+
T Consensus       124 ~~-~l~~~f~v~~vPTlllyk~G~~-v~~~vG~~~~~g~~f-~~~~le~~L~~~  174 (175)
T cd02987         124 AT-GASDEFDTDALPALLVYKGGEL-IGNFVRVTEDLGEDF-DAEDLESFLVEY  174 (175)
T ss_pred             ch-hhHHhCCCCCCCEEEEEECCEE-EEEEechHHhcCCCC-CHHHHHHHHHhc
Confidence            33 6889999985 99999996432 1111       1256 888999888754

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=98.03  E-value=5.5e-05  Score=54.25  Aligned_cols=85  Identities=15%  Similarity=0.278  Sum_probs=64.9

Q ss_pred             HhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-
Q psy7942          41 AFIADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-  115 (216)
Q Consensus        41 ~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-  115 (216)
                      .+.+.+++++|.|+.+||.   ...+.+.++++++ +.+.|.              .+|     ...++++++++++.. 
T Consensus         8 ~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~--------------~id-----~d~~~~l~~~~~v~~v   68 (97)
T cd02949           8 LYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFV--------------EID-----IDEDQEIAEAAGIMGT   68 (97)
T ss_pred             HHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEE--------------EEE-----CCCCHHHHHHCCCeec
Confidence            3455788999999999974   4556778888887 567777              455     667788999999986 


Q ss_pred             CeEEEEecCCCCcccccCCCCCHHHHHHHHh
Q psy7942         116 DTVAIFKKFDEGRVNYEGPASDEAALRKFLS  146 (216)
Q Consensus       116 p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~  146 (216)
                      |++++|++ .+....+.|.. +.+.|.+|++
T Consensus        69 Pt~~i~~~-g~~v~~~~g~~-~~~~~~~~l~   97 (97)
T cd02949          69 PTVQFFKD-KELVKEISGVK-MKSEYREFIE   97 (97)
T ss_pred             cEEEEEEC-CeEEEEEeCCc-cHHHHHHhhC
Confidence            99999985 33345577877 8888998874

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=97.95  E-value=0.00016  Score=59.68  Aligned_cols=120  Identities=13%  Similarity=0.174  Sum_probs=83.7

Q ss_pred             CCCcc--cCCCCCChHHHHHHHHhhhC--CCceeecCHHHHHHhHh-CCCeEEEEEecCCCh---hHHHHHHHHHhhCCC
Q psy7942           3 SCLPG--ERRGGRTAEDIVNWLLKKTG--PPAKEFTSVDEIKAFIA-DSKVVVAGLFKDASS---ELAKTFNEIASKVDD   74 (216)
Q Consensus         3 ~g~~~--~Y~G~Rta~~iv~~l~~~~~--~~v~~l~s~~~~~~~~~-~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~   74 (216)
                      +|...  .|.|....+.+.+|+....+  +....+ +.+..+.+.. +.++.++.|+.+||.   .....+.+++...++
T Consensus        86 ~g~~~~~~~~G~~~~~~l~~~i~~~~~~~~~~~~L-~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~  164 (215)
T TIGR02187        86 EGKDGGIRYTGIPAGYEFAALIEDIVRVSQGEPGL-SEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDK  164 (215)
T ss_pred             CCeeeEEEEeecCCHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCc
Confidence            45543  68899999999999988753  222344 3333444433 566677778899874   445566666666667


Q ss_pred             ceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942          75 LVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus        75 ~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                      +.|.              .+|     ...+++++++|++.. |++++++.  . . .|.|.. ..+.|.+||..
T Consensus       165 i~~~--------------~vD-----~~~~~~~~~~~~V~~vPtl~i~~~--~-~-~~~G~~-~~~~l~~~l~~  214 (215)
T TIGR02187       165 ILGE--------------MIE-----ANENPDLAEKYGVMSVPKIVINKG--V-E-EFVGAY-PEEQFLEYILS  214 (215)
T ss_pred             eEEE--------------EEe-----CCCCHHHHHHhCCccCCEEEEecC--C-E-EEECCC-CHHHHHHHHHh
Confidence            7776              455     556788999999976 99999874  2 1 288887 88999999864

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=97.84  E-value=0.0002  Score=53.72  Aligned_cols=104  Identities=19%  Similarity=0.330  Sum_probs=69.7

Q ss_pred             ceeecCHHHHHHhHhCCCeEEEEEecC-CChhHHHHHHHHH-hhC---CCceEEecchhhHHHHhhhhccccceeeeccc
Q psy7942          30 AKEFTSVDEIKAFIADSKVVVAGLFKD-ASSELAKTFNEIA-SKV---DDLVFDASSELAKTFNEIASKVDDLVFVTSTN  104 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~v~~V~f~~~-~~~~~~~~f~~~A-~~~---~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~  104 (216)
                      ...|.+ -.+++++...+.++|-|=.- .-++..++|..+| ...   +++-++            .=+|.|  +=.-.|
T Consensus         6 ~v~LD~-~tFdKvi~kf~~~LVKFD~ayPyGeKhd~F~~~A~e~~~~~~dLLvA------------eVGikD--YGek~N   70 (126)
T PF07912_consen    6 CVPLDE-LTFDKVIPKFKYVLVKFDVAYPYGEKHDAFKKLAKEASASSDDLLVA------------EVGIKD--YGEKEN   70 (126)
T ss_dssp             SEEEST-THHHHHGGGSSEEEEEEEESS--CHHHHHHHHHHHHHHCC-SSEEEE------------EEECBS--SSS-CC
T ss_pred             eeeccc-eehhheeccCceEEEEEeccCCCcchHHHHHHHHHHHhcCCCceEEE------------EeCccc--ccchhH
Confidence            445654 57899999999999987211 1256677888888 332   566555            001221  102246


Q ss_pred             HHHHHhcCCC---CCeEEEEecCCCCcccc--cCCCCCHHHHHHHHhhcC
Q psy7942         105 ADILAEYSVD---DDTVAIFKKFDEGRVNY--EGPASDEAALRKFLSTQS  149 (216)
Q Consensus       105 ~~v~~~~~v~---~p~i~~~~~~de~~~~y--~G~~~~~~~l~~fi~~~~  149 (216)
                      .+++++|+++   .|.+.+|+...++++.|  +|++ +.+.|.+|++.++
T Consensus        71 ~~Laery~i~ke~fPv~~LF~~~~~~pv~~p~~~~~-t~~~l~~fvk~~t  119 (126)
T PF07912_consen   71 MELAERYKIDKEDFPVIYLFVGDKEEPVRYPFDGDV-TADNLQRFVKSNT  119 (126)
T ss_dssp             HHHHHHTT-SCCC-SEEEEEESSTTSEEEE-TCS-S--HHHHHHHHHHTS
T ss_pred             HHHHHHhCCCcccCCEEEEecCCCCCCccCCccCCc-cHHHHHHHHHhCC
Confidence            7899999996   39999999666778888  8999 9999999999985

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=97.82  E-value=0.00016  Score=55.87  Aligned_cols=94  Identities=16%  Similarity=0.214  Sum_probs=65.3

Q ss_pred             HHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcC
Q psy7942          37 DEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYS  112 (216)
Q Consensus        37 ~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~  112 (216)
                      .+++..+..+++++|.|+.+||.   ...+.|.+++..+ +.+.|..            -.+|     .....+++++|+
T Consensus        11 ~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~------------v~vd-----~~~~~~~~~~~~   73 (142)
T cd02950          11 TPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVM------------LNVD-----NPKWLPEIDRYR   73 (142)
T ss_pred             CCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEE------------EEcC-----CcccHHHHHHcC
Confidence            45566777889999999999984   4567888888887 4555651            0111     112246789999


Q ss_pred             CCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         113 VDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       113 v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      +.. |++++|.+..+....+.|.. +.+.|.++|...
T Consensus        74 V~~iPt~v~~~~~G~~v~~~~G~~-~~~~l~~~l~~l  109 (142)
T cd02950          74 VDGIPHFVFLDREGNEEGQSIGLQ-PKQVLAQNLDAL  109 (142)
T ss_pred             CCCCCEEEEECCCCCEEEEEeCCC-CHHHHHHHHHHH
Confidence            986 99999964233334567877 788888887764

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=97.81  E-value=4.6e-05  Score=56.59  Aligned_cols=56  Identities=16%  Similarity=0.149  Sum_probs=43.6

Q ss_pred             eeeeCcchHHHhhccCCcceEEEEEeC----CccchhhhhHHHHHHHHhcc-CceEEEEcCCCC
Q psy7942         153 VVEFNHETAQKIFGGEIKSHLLVFFSK----AAGHYESHFEPVQTVAKDFR-EKEEQDEDDDQP  211 (216)
Q Consensus       153 v~~~~~~~~~~~~~~~~~~~lllf~~~----~~~~~~~~~~~l~~vA~~~r-~~~~f~~~d~~~  211 (216)
                      |+++|.+|+..++..+   .++++++.    +.++.+.+.+.++++|++|| ++++|+|+|...
T Consensus         1 v~~~~~en~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~   61 (111)
T cd03073           1 VGHRTKDNRAQFTKKP---LVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKED   61 (111)
T ss_pred             CCeeccchHHHhccCC---eEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHH
Confidence            5789999999997544   24445433    44567889999999999999 799999999643

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=97.76  E-value=0.00039  Score=53.85  Aligned_cols=76  Identities=18%  Similarity=0.228  Sum_probs=60.1

Q ss_pred             ceeecCHHHHHHhHh--CCCeEEEEEecCCCh---hHHHHHHHHHhhCCC-ceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          30 AKEFTSVDEIKAFIA--DSKVVVAGLFKDASS---ELAKTFNEIASKVDD-LVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        30 v~~l~s~~~~~~~~~--~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~-~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      +..|.|.+++++.+.  .+++++|-|+++||.   ...+.+.++|.++.+ +.|.              .||     ...
T Consensus         5 l~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~--------------kVD-----VDe   65 (142)
T PLN00410          5 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIY--------------LVD-----ITE   65 (142)
T ss_pred             HhhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEE--------------EEE-----CCC
Confidence            346788999998885  578999999999985   445789999999855 5666              566     677


Q ss_pred             cHHHHHhcCCC-CCeEE-EEecC
Q psy7942         104 NADILAEYSVD-DDTVA-IFKKF  124 (216)
Q Consensus       104 ~~~v~~~~~v~-~p~i~-~~~~~  124 (216)
                      +++++..|++. .|++. +||+.
T Consensus        66 ~~dla~~y~I~~~~t~~~ffk~g   88 (142)
T PLN00410         66 VPDFNTMYELYDPCTVMFFFRNK   88 (142)
T ss_pred             CHHHHHHcCccCCCcEEEEEECC
Confidence            88999999998 56666 88864

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=97.72  E-value=0.00056  Score=50.71  Aligned_cols=85  Identities=14%  Similarity=0.231  Sum_probs=60.7

Q ss_pred             HhCCCeEEEEEecCCC---hhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeE
Q psy7942          43 IADSKVVVAGLFKDAS---SELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTV  118 (216)
Q Consensus        43 ~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i  118 (216)
                      +.....++|.|+++||   ....+.+.+++..++.+.|.              .+|     ...+++++++|++.. |++
T Consensus        19 l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~--------------~vd-----~d~~~~l~~~~~v~~vPt~   79 (113)
T cd02975          19 MKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLE--------------IYD-----FDEDKEKAEKYGVERVPTT   79 (113)
T ss_pred             hCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEE--------------EEe-----CCcCHHHHHHcCCCcCCEE
Confidence            4444446666778886   34557788888777777777              344     456788999999986 999


Q ss_pred             EEEecCCC-CcccccCCCCCHHHHHHHHhh
Q psy7942         119 AIFKKFDE-GRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       119 ~~~~~~de-~~~~y~G~~~~~~~l~~fi~~  147 (216)
                      ++|++... ....|.|-. ....+.+||..
T Consensus        80 ~i~~~g~~~~~~~~~G~~-~~~el~~~i~~  108 (113)
T cd02975          80 IFLQDGGKDGGIRYYGLP-AGYEFASLIED  108 (113)
T ss_pred             EEEeCCeecceEEEEecC-chHHHHHHHHH
Confidence            99996432 234688877 77888888864

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=0.0004  Score=59.58  Aligned_cols=100  Identities=21%  Similarity=0.336  Sum_probs=77.3

Q ss_pred             ceeecCHHHHHH-hHh-C-CCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeec
Q psy7942          30 AKEFTSVDEIKA-FIA-D-SKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTS  102 (216)
Q Consensus        30 v~~l~s~~~~~~-~~~-~-~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t  102 (216)
                      ++.+++ .+++. +++ + ..+++|.|..+||.   .+.+...+++..+ ..+.++              +|+     +.
T Consensus        25 I~dvT~-anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~La--------------kvN-----~D   84 (304)
T COG3118          25 IKDVTE-ANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLA--------------KVN-----CD   84 (304)
T ss_pred             ceechH-hHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEE--------------Eec-----CC
Confidence            556654 56655 444 3 45799999999974   5677888888888 667777              666     88


Q ss_pred             ccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCC
Q psy7942         103 TNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLP  151 (216)
Q Consensus       103 ~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P  151 (216)
                      .++.|+..|+++. |+|++|+.+ ....-|.|.. .++.|..|+.....+
T Consensus        85 ~~p~vAaqfgiqsIPtV~af~dG-qpVdgF~G~q-Pesqlr~~ld~~~~~  132 (304)
T COG3118          85 AEPMVAAQFGVQSIPTVYAFKDG-QPVDGFQGAQ-PESQLRQFLDKVLPA  132 (304)
T ss_pred             cchhHHHHhCcCcCCeEEEeeCC-cCccccCCCC-cHHHHHHHHHHhcCh
Confidence            8999999999986 999999952 2345699998 889999999988655

>KOG0907|consensus

Probab=97.70  E-value=0.00047  Score=50.78  Aligned_cols=86  Identities=26%  Similarity=0.388  Sum_probs=62.4

Q ss_pred             HhHhC-CCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-
Q psy7942          41 AFIAD-SKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-  115 (216)
Q Consensus        41 ~~~~~-~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-  115 (216)
                      +.... ++.++|-|++.||+   ...+.|.++|.+|+++.|.              .+|     ....+++++++++.. 
T Consensus        15 ~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Fl--------------kvd-----vde~~~~~~~~~V~~~   75 (106)
T KOG0907|consen   15 SAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFL--------------KVD-----VDELEEVAKEFNVKAM   75 (106)
T ss_pred             HHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEE--------------EEe-----cccCHhHHHhcCceEe
Confidence            33443 68899999999984   5578999999999778887              343     222588999999986 


Q ss_pred             CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         116 DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       116 p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ||+++||++++ ...+-|.  +...|.+.|..+
T Consensus        76 PTf~f~k~g~~-~~~~vGa--~~~~l~~~i~~~  105 (106)
T KOG0907|consen   76 PTFVFYKGGEE-VDEVVGA--NKAELEKKIAKH  105 (106)
T ss_pred             eEEEEEECCEE-EEEEecC--CHHHHHHHHHhc
Confidence            99999997543 4455565  345677766543

>PTZ00062 glutaredoxin; Provisional

Probab=97.68  E-value=0.00094  Score=54.85  Aligned_cols=113  Identities=14%  Similarity=0.201  Sum_probs=76.0

Q ss_pred             ecCHHHHHHhHhCC-CeEEEEEecCCC---hhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecccHHHH
Q psy7942          33 FTSVDEIKAFIADS-KVVVAGLFKDAS---SELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADIL  108 (216)
Q Consensus        33 l~s~~~~~~~~~~~-~v~~V~f~~~~~---~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~  108 (216)
                      +.+.++++++++++ ..+++.|.++|+   ....+.+.+++..++++.|.                      .+. .+  
T Consensus         3 ~~~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~----------------------~V~-~d--   57 (204)
T PTZ00062          3 FIKKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFY----------------------VVN-LA--   57 (204)
T ss_pred             CCCHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEE----------------------EEc-cc--
Confidence            46788999998865 778888888986   45577888999999899998                      332 11  


Q ss_pred             HhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCCceeeeCcchHHHhhccCCcceEEEEEe
Q psy7942         109 AEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFS  178 (216)
Q Consensus       109 ~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~~~~~~~~~~~~~~~~~lllf~~  178 (216)
                        |+|.. |++++|++..+ .-.+.|.  +...|.+++..+.-+.-.+-..+-++++.+.   .++++|..
T Consensus        58 --~~V~~vPtfv~~~~g~~-i~r~~G~--~~~~~~~~~~~~~~~~~~~~~~~~v~~li~~---~~Vvvf~K  120 (204)
T PTZ00062         58 --DANNEYGVFEFYQNSQL-INSLEGC--NTSTLVSFIRGWAQKGSSEDTVEKIERLIRN---HKILLFMK  120 (204)
T ss_pred             --cCcccceEEEEEECCEE-EeeeeCC--CHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc---CCEEEEEc
Confidence              88886 99999996432 3345664  5678888887765432222111223444443   34777875

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=97.62  E-value=0.0013  Score=53.43  Aligned_cols=96  Identities=21%  Similarity=0.284  Sum_probs=65.1

Q ss_pred             CceeecCHHHHHH-hHhCC--CeEEEEEecCCC---hhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeec
Q psy7942          29 PAKEFTSVDEIKA-FIADS--KVVVAGLFKDAS---SELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTS  102 (216)
Q Consensus        29 ~v~~l~s~~~~~~-~~~~~--~v~~V~f~~~~~---~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t  102 (216)
                      .+..++ .+++.. +.++.  ..++|-||.+|+   ..+.+.+.++|.++..+.|.              .|+       
T Consensus        83 ~v~eis-~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFv--------------kI~-------  140 (192)
T cd02988          83 EVYEIS-KPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFV--------------KII-------  140 (192)
T ss_pred             eEEEeC-HHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEE--------------EEE-------
Confidence            355665 455554 44443  478999999986   45567999999999888888              232       


Q ss_pred             ccHHHHHhcCCCC-CeEEEEecCCCC-----cccccC-CCCCHHHHHHHHhhc
Q psy7942         103 TNADILAEYSVDD-DTVAIFKKFDEG-----RVNYEG-PASDEAALRKFLSTQ  148 (216)
Q Consensus       103 ~~~~v~~~~~v~~-p~i~~~~~~de~-----~~~y~G-~~~~~~~l~~fi~~~  148 (216)
                      . ......|++.. |++++|+++...     ...+-| .+ +.++|+.++...
T Consensus       141 a-d~~~~~~~i~~lPTlliyk~G~~v~~ivG~~~~gg~~~-~~~~lE~~L~~~  191 (192)
T cd02988         141 S-TQCIPNYPDKNLPTILVYRNGDIVKQFIGLLEFGGMNT-TMEDLEWLLVQV  191 (192)
T ss_pred             h-HHhHhhCCCCCCCEEEEEECCEEEEEEeCchhhCCCCC-CHHHHHHHHHhc
Confidence            1 23467899885 999999975321     112233 46 888898887653

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=97.61  E-value=0.00059  Score=50.83  Aligned_cols=70  Identities=14%  Similarity=0.164  Sum_probs=56.5

Q ss_pred             HHHHHHhHh--CCCeEEEEEecCCCh---hHHHHHHHHHhhCCC-ceEEecchhhHHHHhhhhccccceeeecccHHHHH
Q psy7942          36 VDEIKAFIA--DSKVVVAGLFKDASS---ELAKTFNEIASKVDD-LVFDASSELAKTFNEIASKVDDLVFVTSTNADILA  109 (216)
Q Consensus        36 ~~~~~~~~~--~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~-~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~  109 (216)
                      .++++..+.  ++++++|-|+++||.   ...+.|.++|.++.+ +.|.              .+|     ....+++++
T Consensus         2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~--------------kVD-----VDev~dva~   62 (114)
T cd02986           2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIY--------------LVD-----VDKVPVYTQ   62 (114)
T ss_pred             HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEE--------------EEe-----ccccHHHHH
Confidence            456666555  589999999999985   445789999999966 8888              666     777889999


Q ss_pred             hcCCC-CCeEEEEecC
Q psy7942         110 EYSVD-DDTVAIFKKF  124 (216)
Q Consensus       110 ~~~v~-~p~i~~~~~~  124 (216)
                      .|++. -|+.++|++.
T Consensus        63 ~y~I~amPtfvffkng   78 (114)
T cd02986          63 YFDISYIPSTIFFFNG   78 (114)
T ss_pred             hcCceeCcEEEEEECC
Confidence            99998 5999999964

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=97.54  E-value=0.00076  Score=52.89  Aligned_cols=75  Identities=21%  Similarity=0.345  Sum_probs=58.7

Q ss_pred             ceeecCHHHHHHhHhC--CCeEEEEEecCCC---hhHHHHHHHHHhhC--CCceEEecchhhHHHHhhhhccccceeeec
Q psy7942          30 AKEFTSVDEIKAFIAD--SKVVVAGLFKDAS---SELAKTFNEIASKV--DDLVFDASSELAKTFNEIASKVDDLVFVTS  102 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~--~~v~~V~f~~~~~---~~~~~~f~~~A~~~--~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t  102 (216)
                      +..++ .+++++.+..  ..+++|.|+.+||   ..+.+.|.++|+++  .++.|+              .||     ..
T Consensus        30 v~~l~-~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~--------------~VD-----vd   89 (152)
T cd02962          30 IKYFT-PKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFG--------------KID-----IG   89 (152)
T ss_pred             cEEcC-HHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEE--------------EEE-----CC
Confidence            44554 5788888753  4689999999997   45567899999987  358888              566     77


Q ss_pred             ccHHHHHhcCCCC-------CeEEEEecC
Q psy7942         103 TNADILAEYSVDD-------DTVAIFKKF  124 (216)
Q Consensus       103 ~~~~v~~~~~v~~-------p~i~~~~~~  124 (216)
                      .+++++++++++.       |++++|++.
T Consensus        90 ~~~~la~~~~V~~~~~v~~~PT~ilf~~G  118 (152)
T cd02962          90 RFPNVAEKFRVSTSPLSKQLPTIILFQGG  118 (152)
T ss_pred             CCHHHHHHcCceecCCcCCCCEEEEEECC
Confidence            7889999999864       999999964

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=97.51  E-value=0.0015  Score=48.47  Aligned_cols=92  Identities=16%  Similarity=0.306  Sum_probs=63.6

Q ss_pred             ceeecCHHHHHHhHhC-CCeEEEEEecCCC---hhHHHHHHHHHhhCC----CceEEecchhhHHHHhhhhccccceeee
Q psy7942          30 AKEFTSVDEIKAFIAD-SKVVVAGLFKDAS---SELAKTFNEIASKVD----DLVFDASSELAKTFNEIASKVDDLVFVT  101 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~-~~v~~V~f~~~~~---~~~~~~f~~~A~~~~----~~~F~~~~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      +..++ .+++++.+.+ +++++|.|+.+||   ....+.|.++|.++.    .+.|+              .+|     +
T Consensus         3 v~~l~-~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~--------------~vd-----~   62 (114)
T cd02992           3 VIVLD-AASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVA--------------AVD-----C   62 (114)
T ss_pred             eEECC-HHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEE--------------EEe-----c
Confidence            44554 5788887765 4689999999997   455678999998762    36666              333     3


Q ss_pred             c--ccHHHHHhcCCCC-CeEEEEecCCC-C--cccccCCCCCHHHH
Q psy7942         102 S--TNADILAEYSVDD-DTVAIFKKFDE-G--RVNYEGPASDEAAL  141 (216)
Q Consensus       102 t--~~~~v~~~~~v~~-p~i~~~~~~de-~--~~~y~G~~~~~~~l  141 (216)
                      .  .++++++++++.. |++++|++... .  -..|+|+....+++
T Consensus        63 ~~~~~~~~~~~~~i~~~Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~  108 (114)
T cd02992          63 ADEENVALCRDFGVTGYPTLRYFPPFSKEATDGLKQEGPERDVNEL  108 (114)
T ss_pred             cchhhHHHHHhCCCCCCCEEEEECCCCccCCCCCcccCCccCHHHH
Confidence            3  2467899999986 99999997532 1  14677874355554

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=97.48  E-value=0.00095  Score=51.04  Aligned_cols=109  Identities=14%  Similarity=0.121  Sum_probs=78.9

Q ss_pred             HHHHHHHHhhhCCCceeecCHHHHHHhHhCCCeEEEEEecCC-----ChhHHHHHHHHHhhCC--CceEEecchhhHHHH
Q psy7942          16 EDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDA-----SSELAKTFNEIASKVD--DLVFDASSELAKTFN   88 (216)
Q Consensus        16 ~~iv~~l~~~~~~~v~~l~s~~~~~~~~~~~~v~~V~f~~~~-----~~~~~~~f~~~A~~~~--~~~F~~~~~~~~~~~   88 (216)
                      ..|++=|..+ |-  ..++ ...+++|+......++.+-.+.     ..+..-...++|+.+.  ++.|+          
T Consensus         8 ~~l~~rl~~~-g~--~~~~-~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~a----------   73 (132)
T PRK11509          8 DALWQRMLAR-GW--TPVS-ESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVA----------   73 (132)
T ss_pred             HHHHHHHHHc-CC--Cccc-cccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEE----------
Confidence            3455555553 32  2343 3788999988888887654442     3566778889999984  37788          


Q ss_pred             hhhhccccceeeecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcC
Q psy7942          89 EIASKVDDLVFVTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQS  149 (216)
Q Consensus        89 ~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~  149 (216)
                          .+|     ...+++++.+|+|.. ||+++||++.. .-...|-. +.+.+.+||....
T Consensus        74 ----kVD-----iD~~~~LA~~fgV~siPTLl~FkdGk~-v~~i~G~~-~k~~l~~~I~~~L  124 (132)
T PRK11509         74 ----IAD-----LEQSEAIGDRFGVFRFPATLVFTGGNY-RGVLNGIH-PWAELINLMRGLV  124 (132)
T ss_pred             ----EEE-----CCCCHHHHHHcCCccCCEEEEEECCEE-EEEEeCcC-CHHHHHHHHHHHh
Confidence                566     667899999999986 99999996432 34567877 8899999998753

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=97.46  E-value=0.0015  Score=48.79  Aligned_cols=97  Identities=10%  Similarity=0.103  Sum_probs=61.6

Q ss_pred             HHHHHHhHhCC-CeEEEEEecCCChhH---HHHHH---HHHhhC-CCceEEecchhhHHHHhhhhccc--cc------ee
Q psy7942          36 VDEIKAFIADS-KVVVAGLFKDASSEL---AKTFN---EIASKV-DDLVFDASSELAKTFNEIASKVD--DL------VF   99 (216)
Q Consensus        36 ~~~~~~~~~~~-~v~~V~f~~~~~~~~---~~~f~---~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~--~~------~~   99 (216)
                      .++++..++++ ++++|.|+.+||...   .+.+.   .+...+ +++.+.              .++  +.      -.
T Consensus         3 ~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~--------------~i~~d~~~~~~~~~~   68 (125)
T cd02951           3 YEDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVV--------------YINIDGDKEVTDFDG   68 (125)
T ss_pred             HHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEE--------------EEEccCCceeeccCC
Confidence            46778888888 999999999998533   23332   333333 344443              111  00      00


Q ss_pred             eecccHHHHHhcCCCC-CeEEEEecC-CCCcccccCCCCCHHHHHHHHhh
Q psy7942         100 VTSTNADILAEYSVDD-DTVAIFKKF-DEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       100 ~~t~~~~v~~~~~v~~-p~i~~~~~~-de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                      ....+++++..|++.. |+++++.+. .+....+.|.. +.+.+.++|..
T Consensus        69 ~~~~~~~l~~~~~v~~~Pt~~~~~~~gg~~~~~~~G~~-~~~~~~~~l~~  117 (125)
T cd02951          69 EALSEKELARKYRVRFTPTVIFLDPEGGKEIARLPGYL-PPDEFLAYLEY  117 (125)
T ss_pred             CCccHHHHHHHcCCccccEEEEEcCCCCceeEEecCCC-CHHHHHHHHHH
Confidence            0012467899999986 999999974 24345678887 77888887765

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=97.42  E-value=0.00038  Score=50.95  Aligned_cols=62  Identities=15%  Similarity=0.163  Sum_probs=50.3

Q ss_pred             CceeeeCcchHHHhhccCCc-ceEEEEEeCCccchhhhhHHHHHHHHhccC--ceEEEEcCCCCC
Q psy7942         151 PLVVEFNHETAQKIFGGEIK-SHLLVFFSKAAGHYESHFEPVQTVAKDFRE--KEEQDEDDDQPK  212 (216)
Q Consensus       151 P~v~~~~~~~~~~~~~~~~~-~~lllf~~~~~~~~~~~~~~l~~vA~~~r~--~~~f~~~d~~~~  212 (216)
                      |.++.++.+++..+++.... .+++.|+.....+.-++++.++++|++|++  +++++|+|--++
T Consensus         1 ptlrkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~F   65 (120)
T cd03074           1 PTLRKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDF   65 (120)
T ss_pred             CchhhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccC
Confidence            56778889998888886543 456678887777889999999999999987  489999986543

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=97.41  E-value=0.00035  Score=50.09  Aligned_cols=52  Identities=27%  Similarity=0.215  Sum_probs=39.6

Q ss_pred             chHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         159 ETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       159 ~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      +++..+...+ .+.+++|...++++...+.+.++++|++|++++.|+|+|...
T Consensus         3 ~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~   54 (103)
T cd02982           3 ETFFNYEESG-KPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADD   54 (103)
T ss_pred             hHHhhhhhcC-CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHh
Confidence            3444444433 345667877776678999999999999999999999998754

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=97.37  E-value=0.0005  Score=52.45  Aligned_cols=61  Identities=16%  Similarity=0.277  Sum_probs=45.1

Q ss_pred             CceeeeCcchH-HHhhccCCcceEEEEEeC----CccchhhhhHHHHHHHHhccCc-eEEEEcCCCCC
Q psy7942         151 PLVVEFNHETA-QKIFGGEIKSHLLVFFSK----AAGHYESHFEPVQTVAKDFREK-EEQDEDDDQPK  212 (216)
Q Consensus       151 P~v~~~~~~~~-~~~~~~~~~~~lllf~~~----~~~~~~~~~~~l~~vA~~~r~~-~~f~~~d~~~~  212 (216)
                      |-+.++++++. ....... ..+++.|++.    +.++++.+++.|+++|++||++ ++|+|+|....
T Consensus         2 ~~~~~l~~~~~~~~~C~~~-~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~   68 (130)
T cd02983           2 PEIIELTSEDVFEETCEEK-QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQ   68 (130)
T ss_pred             CceEEecCHHHHHhhccCC-CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCccc
Confidence            67888987654 3344332 3566667753    3446788999999999999999 99999998764

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=97.30  E-value=0.0033  Score=47.34  Aligned_cols=91  Identities=8%  Similarity=0.111  Sum_probs=61.1

Q ss_pred             CHHHHHHhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeeccc-------
Q psy7942          35 SVDEIKAFIADSKVVVAGLFKDAS---SELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTN-------  104 (216)
Q Consensus        35 s~~~~~~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~-------  104 (216)
                      +.+++.+.+++++..+|+|+.+||   ....+.+.+++++. ...|.              .+|     ...+       
T Consensus        12 t~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-~~~~y--------------~vd-----vd~~~~~~~~~   71 (122)
T TIGR01295        12 TVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT-KAPIY--------------YID-----SENNGSFEMSS   71 (122)
T ss_pred             CHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc-CCcEE--------------EEE-----CCCccCcCccc
Confidence            568899999999999999999998   45567888888874 33333              111     1111       


Q ss_pred             ----HHHHHhcCCC-----CCeEEEEecCCCCcccccCCCCCHHHHHHHHh
Q psy7942         105 ----ADILAEYSVD-----DDTVAIFKKFDEGRVNYEGPASDEAALRKFLS  146 (216)
Q Consensus       105 ----~~v~~~~~v~-----~p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~  146 (216)
                          +++.++|++.     .|++++|+++.+ .....|...+.+.|.+|+.
T Consensus        72 ~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~-v~~~~G~~~~~~~l~~~~~  121 (122)
T TIGR01295        72 LNDLTAFRSRFGIPTSFMGTPTFVHITDGKQ-VSVRCGSSTTAQELQDIAA  121 (122)
T ss_pred             HHHHHHHHHHcCCcccCCCCCEEEEEeCCeE-EEEEeCCCCCHHHHHHHhh
Confidence                1345666543     499999997543 3345674437899999874

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>KOG0908|consensus

Probab=97.20  E-value=0.0024  Score=53.58  Aligned_cols=98  Identities=21%  Similarity=0.258  Sum_probs=73.0

Q ss_pred             CceeecCHHHHHHhHhC--CCeEEEEEecCCChh---HHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          29 PAKEFTSVDEIKAFIAD--SKVVVAGLFKDASSE---LAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~~~--~~v~~V~f~~~~~~~---~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      +|+++.+.++++.-+..  .+.++|-|+.+||++   ..+.|.++|.+|+...|.              +||     ...
T Consensus         2 ~Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFl--------------kVd-----Vd~   62 (288)
T KOG0908|consen    2 PVIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFL--------------KVD-----VDE   62 (288)
T ss_pred             CeEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEE--------------EEe-----HHH
Confidence            57889999999887764  458999999999854   477999999999888887              444     333


Q ss_pred             cHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         104 NADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       104 ~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      -+..+..+||+. ||.++|++.- ....++|.  +...|+.=|..+
T Consensus        63 c~~taa~~gV~amPTFiff~ng~-kid~~qGA--d~~gLe~kv~~~  105 (288)
T KOG0908|consen   63 CRGTAATNGVNAMPTFIFFRNGV-KIDQIQGA--DASGLEEKVAKY  105 (288)
T ss_pred             hhchhhhcCcccCceEEEEecCe-EeeeecCC--CHHHHHHHHHHH
Confidence            345678899987 9999999742 24457776  456666666554

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=96.87  E-value=0.044  Score=51.49  Aligned_cols=155  Identities=15%  Similarity=0.123  Sum_probs=99.4

Q ss_pred             HHHHHhHh--CCCeEEEEEecCCC--hhHHHHH-HHHHhhCCCceEEecchhhHHHHhhhhccccceeeecccHHHHHhc
Q psy7942          37 DEIKAFIA--DSKVVVAGLFKDAS--SELAKTF-NEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEY  111 (216)
Q Consensus        37 ~~~~~~~~--~~~v~~V~f~~~~~--~~~~~~f-~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~  111 (216)
                      ++++..+.  .++|.++.|..+.+  +.....| .++|.-.+.+.+-              ..|     ...+++++++|
T Consensus       355 ~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~--------------~~~-----~~~~~~~~~~~  415 (555)
T TIGR03143       355 QQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSE--------------AVN-----RGEEPESETLP  415 (555)
T ss_pred             HHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEE--------------Eec-----cccchhhHhhc
Confidence            34555554  46777777775432  2333333 3555433666654              111     34567889999


Q ss_pred             CCCC-CeEEEEecCC-CCcccccCCCCCHHHHHHHHhh---cCCCceeeeCcchHHHhhccCCcceEEEEEeCCccchhh
Q psy7942         112 SVDD-DTVAIFKKFD-EGRVNYEGPASDEAALRKFLST---QSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYES  186 (216)
Q Consensus       112 ~v~~-p~i~~~~~~d-e~~~~y~G~~~~~~~l~~fi~~---~~~P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~  186 (216)
                      ++.. |++.+++... ...+.|.|-. .-.++..||..   .+-+ -..++.+....+-.-+.+..+-+|+..+++.+++
T Consensus       416 ~v~~~P~~~i~~~~~~~~~i~f~g~P-~G~Ef~s~i~~i~~~~~~-~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~  493 (555)
T TIGR03143       416 KITKLPTVALLDDDGNYTGLKFHGVP-SGHELNSFILALYNAAGP-GQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPD  493 (555)
T ss_pred             CCCcCCEEEEEeCCCcccceEEEecC-ccHhHHHHHHHHHHhcCC-CCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHH
Confidence            9975 9999986433 3348899866 55556666544   2322 2356777766666544345567788888888899


Q ss_pred             hhHHHHHHHHhccCceEEEEcCCCCCc
Q psy7942         187 HFEPVQTVAKDFREKEEQDEDDDQPKR  213 (216)
Q Consensus       187 ~~~~l~~vA~~~r~~~~f~~~d~~~~~  213 (216)
                      ..+.++++|.++. ++..-++|.+.+.
T Consensus       494 ~~~~~~~~~~~~~-~i~~~~i~~~~~~  519 (555)
T TIGR03143       494 VVLAAQRIASLNP-NVEAEMIDVSHFP  519 (555)
T ss_pred             HHHHHHHHHHhCC-CceEEEEECcccH
Confidence            9999999999986 6777777776553

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=96.87  E-value=0.013  Score=55.35  Aligned_cols=99  Identities=21%  Similarity=0.316  Sum_probs=68.6

Q ss_pred             ceeecCHHHHHHhHh----CCCeEEEEEecCCChhHHH---H-H--HHHHhhCCCceEEecchhhHHHHhhhhcccccee
Q psy7942          30 AKEFTSVDEIKAFIA----DSKVVVAGLFKDASSELAK---T-F--NEIASKVDDLVFDASSELAKTFNEIASKVDDLVF   99 (216)
Q Consensus        30 v~~l~s~~~~~~~~~----~~~v~~V~f~~~~~~~~~~---~-f--~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~   99 (216)
                      -+.+.+.+++++.++    ++++++|.|+.+||.....   . |  .++.+.++++.+.              ++|    
T Consensus       454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v--------------~vD----  515 (571)
T PRK00293        454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLL--------------QAD----  515 (571)
T ss_pred             ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEE--------------EEE----
Confidence            346677888877654    3679999999999854432   2 2  3455556666665              454    


Q ss_pred             eecc----cHHHHHhcCCCC-CeEEEEecCCCC--cccccCCCCCHHHHHHHHhhc
Q psy7942         100 VTST----NADILAEYSVDD-DTVAIFKKFDEG--RVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       100 ~~t~----~~~v~~~~~v~~-p~i~~~~~~de~--~~~y~G~~~~~~~l~~fi~~~  148 (216)
                       .+.    +++++++|++.+ |++++|++..+.  ...+.|.. +.+.+.+++++.
T Consensus       516 -vt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~~~r~~G~~-~~~~f~~~L~~~  569 (571)
T PRK00293        516 -VTANNAEDVALLKHYNVLGLPTILFFDAQGQEIPDARVTGFM-DAAAFAAHLRQL  569 (571)
T ss_pred             -CCCCChhhHHHHHHcCCCCCCEEEEECCCCCCcccccccCCC-CHHHHHHHHHHh
Confidence             442    357889999987 999999753222  24578888 899999998764

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=96.84  E-value=0.0098  Score=43.21  Aligned_cols=97  Identities=15%  Similarity=0.229  Sum_probs=65.5

Q ss_pred             ceeecCHHHHHHhHhCCCeEEEEEecCCC--hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecc--c
Q psy7942          30 AKEFTSVDEIKAFIADSKVVVAGLFKDAS--SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTST--N  104 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~--~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~--~  104 (216)
                      +..|++..++.++++.+..++|.|..+..  ....+.|.++|... ..-+..              .||     +..  .
T Consensus         3 ie~i~d~KdfKKLLRTr~NVLvLy~ks~k~a~~~Lk~~~~~A~~vkG~gT~~--------------~vd-----Cgd~e~   63 (112)
T cd03067           3 IEDISDHKDFKKLLRTRNNVLVLYSKSAKSAEALLKLLSDVAQAVKGQGTIA--------------WID-----CGDSES   63 (112)
T ss_pred             cccccchHHHHHHHhhcCcEEEEEecchhhHHHHHHHHHHHHHHhcCceeEE--------------EEe-----cCChHH
Confidence            34567788999999998888888877653  45577999999887 222222              122     443  5


Q ss_pred             HHHHHhcCCC----C-CeE-EEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942         105 ADILAEYSVD----D-DTV-AIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       105 ~~v~~~~~v~----~-p~i-~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                      +.+++++.++    . |.. .=|+. .+-...|+-.. +..+|.+|++.
T Consensus        64 kKLCKKlKv~~~~kp~~~~LkHYKd-G~fHkdYdR~~-t~kSmv~FlrD  110 (112)
T cd03067          64 RKLCKKLKVDPSSKPKPVELKHYKD-GDFHTEYNRQL-TFKSMVAFLRD  110 (112)
T ss_pred             HHHHHHHccCCCCCCCcchhhcccC-CCccccccchh-hHHHHHHHhhC
Confidence            6789999987    2 322 23332 12245688788 89999999875

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=96.83  E-value=0.014  Score=39.79  Aligned_cols=74  Identities=14%  Similarity=0.266  Sum_probs=54.2

Q ss_pred             EEEEEecCCC---hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeEEEEec
Q psy7942          49 VVAGLFKDAS---SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAIFKK  123 (216)
Q Consensus        49 ~~V~f~~~~~---~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~  123 (216)
                      -+..|+.+||   ....+.+.+++..+ ..+.+.              .+|     ...++++++++++.. |++++ . 
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~--------------~vd-----~~~~~~~~~~~~v~~vPt~~~-~-   60 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVE--------------YIN-----VMENPQKAMEYGIMAVPAIVI-N-   60 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEE--------------EEe-----CccCHHHHHHcCCccCCEEEE-C-
Confidence            3556777876   45677888888877 456666              455     556788899999986 99986 2 


Q ss_pred             CCCCcccccCCCCCHHHHHHHHhh
Q psy7942         124 FDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       124 ~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                        + ...+.|.. +.+.|.+++..
T Consensus        61 --g-~~~~~G~~-~~~~l~~~l~~   80 (82)
T TIGR00411        61 --G-DVEFIGAP-TKEELVEAIKK   80 (82)
T ss_pred             --C-EEEEecCC-CHHHHHHHHHh
Confidence              2 24788887 88999988865

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=96.25  E-value=0.016  Score=41.43  Aligned_cols=59  Identities=12%  Similarity=0.147  Sum_probs=47.5

Q ss_pred             CceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         151 PLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       151 P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      |-+.+++.+++......+ .+.++.|+..+.+....+...+.++|+++++++.|..+|-.
T Consensus         1 ~~~~~l~~~~f~~~v~~~-~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~   59 (101)
T cd03003           1 PEIVTLDRGDFDAAVNSG-EIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCG   59 (101)
T ss_pred             CCeEEcCHhhHHHHhcCC-CeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCC
Confidence            457889988988877655 45566688888888899999999999999998887766644

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=96.23  E-value=0.034  Score=41.73  Aligned_cols=76  Identities=14%  Similarity=0.189  Sum_probs=53.9

Q ss_pred             ecCHHHHHHhHhC--CCeEEEEEec-------CCChh---HHHHHHHHHhhCC-CceEEecchhhHHHHhhhhccc--cc
Q psy7942          33 FTSVDEIKAFIAD--SKVVVAGLFK-------DASSE---LAKTFNEIASKVD-DLVFDASSELAKTFNEIASKVD--DL   97 (216)
Q Consensus        33 l~s~~~~~~~~~~--~~v~~V~f~~-------~~~~~---~~~~f~~~A~~~~-~~~F~~~~~~~~~~~~~~~~~~--~~   97 (216)
                      +.+.+++.+.+.+  +++++|.|++       +||.+   ..+.+.+++.++. ++.|.              .|+  +.
T Consensus         6 ~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv--------------~Vdvd~~   71 (119)
T cd02952           6 VRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFI--------------YCDVGDR   71 (119)
T ss_pred             ccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEE--------------EEEcCCc
Confidence            4577888888875  6789999999       89853   3468888888884 67777              333  00


Q ss_pred             -eeeecccHHHHHhcCCC-C-CeEEEEec
Q psy7942          98 -VFVTSTNADILAEYSVD-D-DTVAIFKK  123 (216)
Q Consensus        98 -~~~~t~~~~v~~~~~v~-~-p~i~~~~~  123 (216)
                       .| ...+.+++.++++. . |++++|+.
T Consensus        72 ~~w-~d~~~~~~~~~~I~~~iPT~~~~~~   99 (119)
T cd02952          72 PYW-RDPNNPFRTDPKLTTGVPTLLRWKT   99 (119)
T ss_pred             ccc-cCcchhhHhccCcccCCCEEEEEcC
Confidence             00 01245788899997 5 99999974

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=95.85  E-value=0.077  Score=39.17  Aligned_cols=93  Identities=11%  Similarity=0.065  Sum_probs=59.8

Q ss_pred             HHHHHHhHhCCCeEEEEEecCCC-hhHHHHHHHHHhh---C-CCceEEecchhhHHHHhhhhccccceeeecccHHHHHh
Q psy7942          36 VDEIKAFIADSKVVVAGLFKDAS-SELAKTFNEIASK---V-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAE  110 (216)
Q Consensus        36 ~~~~~~~~~~~~v~~V~f~~~~~-~~~~~~f~~~A~~---~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~  110 (216)
                      .+..+.+..+.-...+.||.+.+ ......|.++|++   + ..+.|..              +|     ......+++.
T Consensus         6 ~e~~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~--------------~d-----~~~~~~~~~~   66 (111)
T cd03072           6 FENAEELTEEGLPFLILFHDKDDLESLKEFKQAVARQLISEKGAINFLT--------------AD-----GDKFRHPLLH   66 (111)
T ss_pred             cccHHHHhcCCCCeEEEEecchHHHHHHHHHHHHHHHHHhcCceEEEEE--------------Ee-----chHhhhHHHH
Confidence            34556666655444444553333 4567799999999   7 6677871              22     2222237888


Q ss_pred             cCCCC---CeEEEEecCCCCccc-ccCCCCCHHHHHHHHhhc
Q psy7942         111 YSVDD---DTVAIFKKFDEGRVN-YEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       111 ~~v~~---p~i~~~~~~de~~~~-y~G~~~~~~~l~~fi~~~  148 (216)
                      +|++.   |.+++....+..... +.+.+ +.++|.+|+...
T Consensus        67 fgl~~~~~P~i~i~~~~~~~Ky~~~~~~~-t~~~i~~Fv~~~  107 (111)
T cd03072          67 LGKTPADLPVIAIDSFRHMYLFPDFEDVY-VPGKLKQFVLDL  107 (111)
T ss_pred             cCCCHhHCCEEEEEcchhcCcCCCCcccc-CHHHHHHHHHHH
Confidence            99874   888887752212333 56888 999999999764

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=95.85  E-value=0.094  Score=35.81  Aligned_cols=69  Identities=16%  Similarity=0.266  Sum_probs=47.2

Q ss_pred             EEEecCCC---hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeEEEEecCC
Q psy7942          51 AGLFKDAS---SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAIFKKFD  125 (216)
Q Consensus        51 V~f~~~~~---~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~~d  125 (216)
                      |-||.+||   ....+.+.+++.++ ..+.|.                      .+.+.+.+.+|++.. |++++    +
T Consensus         3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~----------------------~v~~~~~a~~~~v~~vPti~i----~   56 (76)
T TIGR00412         3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFE----------------------KVTDMNEILEAGVTATPGVAV----D   56 (76)
T ss_pred             EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEE----------------------EeCCHHHHHHcCCCcCCEEEE----C
Confidence            45677886   45566788888887 456666                      444566688899886 99999    2


Q ss_pred             CCcccccCCCCCHHHHHHHHh
Q psy7942         126 EGRVNYEGPASDEAALRKFLS  146 (216)
Q Consensus       126 e~~~~y~G~~~~~~~l~~fi~  146 (216)
                      + ...+.|...+.+.|.++++
T Consensus        57 G-~~~~~G~~~~~~~l~~~l~   76 (76)
T TIGR00412        57 G-ELVIMGKIPSKEEIKEILK   76 (76)
T ss_pred             C-EEEEEeccCCHHHHHHHhC
Confidence            3 3347885326678888763

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=95.82  E-value=0.029  Score=40.20  Aligned_cols=61  Identities=16%  Similarity=0.259  Sum_probs=47.4

Q ss_pred             CceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         151 PLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       151 P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      |.+.+++.+++.......-.+.++.|+..+.+....+...+.++|+++++.+.|..+|...
T Consensus         1 ~~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~   61 (104)
T cd03004           1 PSVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK   61 (104)
T ss_pred             CcceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc
Confidence            4577889888887654432344556888888888999999999999999889888887654

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=95.64  E-value=0.071  Score=45.55  Aligned_cols=99  Identities=20%  Similarity=0.232  Sum_probs=59.9

Q ss_pred             ceeecCHHHHHHhHhC---CCeEEEEEecCC---ChhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          30 AKEFTSVDEIKAFIAD---SKVVVAGLFKDA---SSELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~---~~v~~V~f~~~~---~~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      +..|.+.+.+-+.+..   ...+||-+|.+.   |..+...+..+|.+|+.+.|.              +|.     ++ 
T Consensus       127 v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFv--------------kI~-----a~-  186 (265)
T PF02114_consen  127 VYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFV--------------KIR-----AS-  186 (265)
T ss_dssp             EEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEE--------------EEE-----EC-
T ss_pred             EEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEE--------------EEe-----hh-
Confidence            5677777777666643   345778888774   456677899999999999997              221     11 


Q ss_pred             cHHHHHhcCCCC-CeEEEEecCCC--Ccccc---cC-CCCCHHHHHHHHhhcC
Q psy7942         104 NADILAEYSVDD-DTVAIFKKFDE--GRVNY---EG-PASDEAALRKFLSTQS  149 (216)
Q Consensus       104 ~~~v~~~~~v~~-p~i~~~~~~de--~~~~y---~G-~~~~~~~l~~fi~~~~  149 (216)
                      .-.+...|.... |+|++|+.++-  ..+.+   -| ++ +..+|+.|+..+.
T Consensus       187 ~~~~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g~df-~~~dlE~~L~~~G  238 (265)
T PF02114_consen  187 KCPASENFPDKNLPTLLVYKNGDLIGNFVGLTDLLGDDF-FTEDLEAFLIEYG  238 (265)
T ss_dssp             GCCTTTTS-TTC-SEEEEEETTEEEEEECTGGGCT-TT---HHHHHHHHHTTT
T ss_pred             ccCcccCCcccCCCEEEEEECCEEEEeEEehHHhcCCCC-CHHHHHHHHHHcC
Confidence            111456677664 99999996531  11111   12 56 8899999999875

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=95.63  E-value=0.041  Score=38.75  Aligned_cols=60  Identities=13%  Similarity=0.228  Sum_probs=48.5

Q ss_pred             eeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCCC
Q psy7942         153 VVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQPK  212 (216)
Q Consensus       153 v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~~  212 (216)
                      |..+|.+++.......-...++.|+....+....+...+.++|+++.+++.|..+|....
T Consensus         1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~   60 (103)
T PF00085_consen    1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN   60 (103)
T ss_dssp             SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS
T ss_pred             CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhcc
Confidence            457888999887776324556668888888889999999999999999999999887643

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>KOG0914|consensus

Probab=95.30  E-value=0.041  Score=45.47  Aligned_cols=78  Identities=24%  Similarity=0.295  Sum_probs=59.9

Q ss_pred             ceeecCHHHHHHhHhC--CCeEEEEEecCCChh---HHHHHHHHHhhC--CCceEEecchhhHHHHhhhhccccceeeec
Q psy7942          30 AKEFTSVDEIKAFIAD--SKVVVAGLFKDASSE---LAKTFNEIASKV--DDLVFDASSELAKTFNEIASKVDDLVFVTS  102 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~--~~v~~V~f~~~~~~~---~~~~f~~~A~~~--~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t  102 (216)
                      ++.+++.+.++.-+..  +...+|-||+.|+.+   -.+.|-+++.++  +.+.||              +||     .-
T Consensus       126 ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFG--------------kvD-----iG  186 (265)
T KOG0914|consen  126 IKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFG--------------KVD-----IG  186 (265)
T ss_pred             eeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCccc--------------cee-----ec
Confidence            5678777777766653  567899999988643   357899999888  789999              677     55


Q ss_pred             ccHHHHHhcCCC-------CCeEEEEecCCC
Q psy7942         103 TNADILAEYSVD-------DDTVAIFKKFDE  126 (216)
Q Consensus       103 ~~~~v~~~~~v~-------~p~i~~~~~~de  126 (216)
                      .=++++++|+++       .||+.+|+++.|
T Consensus       187 rfpd~a~kfris~s~~srQLPT~ilFq~gkE  217 (265)
T KOG0914|consen  187 RFPDVAAKFRISLSPGSRQLPTYILFQKGKE  217 (265)
T ss_pred             cCcChHHheeeccCcccccCCeEEEEccchh
Confidence            557788999876       499999997543

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=95.24  E-value=0.12  Score=48.49  Aligned_cols=97  Identities=18%  Similarity=0.248  Sum_probs=67.7

Q ss_pred             eecCHHHHHHhHhCCC--eEEEEEecCCCh--hHHH--HHHHH--HhhCCCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          32 EFTSVDEIKAFIADSK--VVVAGLFKDASS--ELAK--TFNEI--ASKVDDLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        32 ~l~s~~~~~~~~~~~~--v~~V~f~~~~~~--~~~~--~f~~~--A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      .+.+..+++..+.+++  ++++=||+|||-  ++.+  +|.+.  +.+.+++..-              +.|     .|.
T Consensus       458 ~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlL--------------qaD-----vT~  518 (569)
T COG4232         458 PISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLL--------------QAD-----VTA  518 (569)
T ss_pred             ccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEE--------------Eee-----ecC
Confidence            4556568888888877  999999999982  2222  44322  2334566554              455     553


Q ss_pred             -cH---HHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         104 -NA---DILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       104 -~~---~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                       |+   ++.+++++-+ |++++|.+..+++..-.|-. +.+.+.+++++.
T Consensus       519 ~~p~~~~lLk~~~~~G~P~~~ff~~~g~e~~~l~gf~-~a~~~~~~l~~~  567 (569)
T COG4232         519 NDPAITALLKRLGVFGVPTYLFFGPQGSEPEILTGFL-TADAFLEHLERA  567 (569)
T ss_pred             CCHHHHHHHHHcCCCCCCEEEEECCCCCcCcCCccee-cHHHHHHHHHHh
Confidence             33   4577888865 99999996555566688988 999999999764

>TIGR02740 TraF-like TraF-like protein

Probab=94.99  E-value=0.2  Score=42.89  Aligned_cols=89  Identities=12%  Similarity=0.036  Sum_probs=58.2

Q ss_pred             CCeEEEEEecCCC---hhHHHHHHHHHhhCC-CceEEecchhhHHHHhhhhccccce---e-eecccHHHHHhcCCCC-C
Q psy7942          46 SKVVVAGLFKDAS---SELAKTFNEIASKVD-DLVFDASSELAKTFNEIASKVDDLV---F-VTSTNADILAEYSVDD-D  116 (216)
Q Consensus        46 ~~v~~V~f~~~~~---~~~~~~f~~~A~~~~-~~~F~~~~~~~~~~~~~~~~~~~~~---~-~~t~~~~v~~~~~v~~-p  116 (216)
                      .++++|.|+.+||   ....+.+.+++.++. .+.+.              .+|+.-   + ....+..+++++++.. |
T Consensus       166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~V--------------svD~~~~~~fp~~~~d~~la~~~gV~~vP  231 (271)
T TIGR02740       166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPV--------------SVDGGPLPGFPNARPDAGQAQQLKIRTVP  231 (271)
T ss_pred             CCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEE--------------eCCCCccccCCcccCCHHHHHHcCCCcCC
Confidence            6789999999998   455678888888873 22222              122100   0 0112456889999986 9


Q ss_pred             eEEEEecCCC-CcccccCCCCCHHHHHHHHhhcC
Q psy7942         117 TVAIFKKFDE-GRVNYEGPASDEAALRKFLSTQS  149 (216)
Q Consensus       117 ~i~~~~~~de-~~~~y~G~~~~~~~l~~fi~~~~  149 (216)
                      +++++.+..+ -.....|.. +.+.|.+.|....
T Consensus       232 tl~Lv~~~~~~v~~v~~G~~-s~~eL~~~i~~~a  264 (271)
T TIGR02740       232 AVFLADPDPNQFTPIGFGVM-SADELVDRILLAA  264 (271)
T ss_pred             eEEEEECCCCEEEEEEeCCC-CHHHHHHHHHHHh
Confidence            9999996322 233456888 8889988887543

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=94.99  E-value=0.27  Score=34.76  Aligned_cols=72  Identities=8%  Similarity=0.111  Sum_probs=51.7

Q ss_pred             CCCeEEEEEecCCC---hhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeEEE
Q psy7942          45 DSKVVVAGLFKDAS---SELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAI  120 (216)
Q Consensus        45 ~~~v~~V~f~~~~~---~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~  120 (216)
                      ++++-+..|..++|   ......+.+++..++.+.|.              .+|     .+..++++++|++.. |++++
T Consensus        11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~--------------~vd-----~~~~~e~a~~~~V~~vPt~vi   71 (89)
T cd03026          11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHE--------------MID-----GALFQDEVEERGIMSVPAIFL   71 (89)
T ss_pred             CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEE--------------EEE-----hHhCHHHHHHcCCccCCEEEE
Confidence            67777777887765   66677888888888888877              233     555678999999976 99975


Q ss_pred             EecCCCCcccccCCCCCHHHH
Q psy7942         121 FKKFDEGRVNYEGPASDEAAL  141 (216)
Q Consensus       121 ~~~~de~~~~y~G~~~~~~~l  141 (216)
                          ++ ...+.|.. +.+.+
T Consensus        72 ----dG-~~~~~G~~-~~~e~   86 (89)
T cd03026          72 ----NG-ELFGFGRM-TLEEI   86 (89)
T ss_pred             ----CC-EEEEeCCC-CHHHH
Confidence                22 45667865 55544

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=94.92  E-value=0.078  Score=38.07  Aligned_cols=58  Identities=17%  Similarity=0.198  Sum_probs=44.8

Q ss_pred             eeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         153 VVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       153 v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      +.+++.+++.......-.+.++.|+..+.....++...+.++|+++++.+.+..+|..
T Consensus         2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~   59 (109)
T cd03002           2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCD   59 (109)
T ss_pred             eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecC
Confidence            5688988988876654234566688888888888999999999999988777666544

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=94.73  E-value=0.12  Score=38.40  Aligned_cols=60  Identities=8%  Similarity=0.063  Sum_probs=47.2

Q ss_pred             CceeeeCcchHHHh---hccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         151 PLVVEFNHETAQKI---FGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       151 P~v~~~~~~~~~~~---~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      +-|.+++.+|+.+.   ...+ ...++.|+.++..++..+...+.++|+++++.+.|.-+|...
T Consensus         9 ~~v~~l~~~~f~~~~~v~~~~-~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~   71 (113)
T cd03006           9 SPVLDFYKGQLDYAEELRTDA-EVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWW   71 (113)
T ss_pred             CCeEEechhhhHHHHhcccCC-CEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC
Confidence            45779999888765   2333 345666888888888999999999999999988888877653

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=94.72  E-value=0.11  Score=36.74  Aligned_cols=58  Identities=19%  Similarity=0.196  Sum_probs=44.3

Q ss_pred             eeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         153 VVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       153 v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      +.+++.+++........++.++.|..+..+....+...+.++|+++++++.+..+|..
T Consensus         2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~   59 (103)
T cd03001           2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDAD   59 (103)
T ss_pred             eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECc
Confidence            4678888887766544233566677777778888999999999999998888877754

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=94.60  E-value=1.3  Score=41.20  Aligned_cols=97  Identities=10%  Similarity=0.064  Sum_probs=70.3

Q ss_pred             CCeEEEEecCCCCcccccCCCCCHHHHHHHHhhc---CCCceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHH
Q psy7942         115 DDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ---SLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPV  191 (216)
Q Consensus       115 ~p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~---~~P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l  191 (216)
                      .|++.+.++.+...+.|.|-. .-.++..||..-   +-| -..++++....+-.-+.+..+.+|...+++.++...+.+
T Consensus        61 ~p~~~~~~~~~~~~i~f~g~P-~g~Ef~s~i~~i~~~~~~-~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~  138 (517)
T PRK15317         61 KPSFSITRPGEDTGVRFAGIP-MGHEFTSLVLALLQVGGH-PPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQAL  138 (517)
T ss_pred             CCEEEEEcCCccceEEEEecC-ccHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHH
Confidence            499998875444568899977 666677776542   333 345566666666654445567889998888889999999


Q ss_pred             HHHHHhccCceEEEEcCCCCCcc
Q psy7942         192 QTVAKDFREKEEQDEDDDQPKRD  214 (216)
Q Consensus       192 ~~vA~~~r~~~~f~~~d~~~~~~  214 (216)
                      .++|..+. ++.+-++|.+...+
T Consensus       139 ~~~a~~~~-~i~~~~id~~~~~~  160 (517)
T PRK15317        139 NLMAVLNP-NITHTMIDGALFQD  160 (517)
T ss_pred             HHHHHhCC-CceEEEEEchhCHh
Confidence            99999876 78888888876644

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=94.60  E-value=0.3  Score=36.84  Aligned_cols=70  Identities=13%  Similarity=0.115  Sum_probs=44.3

Q ss_pred             CHHHHHHhHhCCCeEEEEEecCCChhHHH----HHH--HHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHH
Q psy7942          35 SVDEIKAFIADSKVVVAGLFKDASSELAK----TFN--EIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADI  107 (216)
Q Consensus        35 s~~~~~~~~~~~~v~~V~f~~~~~~~~~~----~f~--~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v  107 (216)
                      +.+.++...++++.++|.|+.+||.....    +|.  +++..+ .++.+.              .+|     .+..+++
T Consensus         4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~V--------------kvD-----~~~~~~~   64 (124)
T cd02955           4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPI--------------KVD-----REERPDV   64 (124)
T ss_pred             CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEE--------------EEe-----CCcCcHH
Confidence            34667788888999999999999853321    243  344443 455444              333     4444455


Q ss_pred             HH--------hcCCCC-CeEEEEec
Q psy7942         108 LA--------EYSVDD-DTVAIFKK  123 (216)
Q Consensus       108 ~~--------~~~v~~-p~i~~~~~  123 (216)
                      ++        .|++.+ |+++++.+
T Consensus        65 ~~~~~~~~~~~~~~~G~Pt~vfl~~   89 (124)
T cd02955          65 DKIYMNAAQAMTGQGGWPLNVFLTP   89 (124)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEECC
Confidence            43        357776 99999986

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=94.10  E-value=0.46  Score=34.85  Aligned_cols=92  Identities=15%  Similarity=0.263  Sum_probs=48.2

Q ss_pred             eeecCHHHHHHhHhC--CCeEEEEEecCCC---hhHHHHHHHHHhhCC-CceEEecchhhHHHHhhhhccccceeeeccc
Q psy7942          31 KEFTSVDEIKAFIAD--SKVVVAGLFKDAS---SELAKTFNEIASKVD-DLVFDASSELAKTFNEIASKVDDLVFVTSTN  104 (216)
Q Consensus        31 ~~l~s~~~~~~~~~~--~~v~~V~f~~~~~---~~~~~~f~~~A~~~~-~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~  104 (216)
                      +.|++.++++++++.  ++.++|.=-...|   ...+..|...+...+ ++.++.              +| .+--...+
T Consensus         2 ~~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~--------------l~-v~~~R~vS   66 (105)
T PF11009_consen    2 KPLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYY--------------LD-VIEYRPVS   66 (105)
T ss_dssp             -E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEE--------------EE-GGGGHHHH
T ss_pred             CccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEE--------------EE-EEeCchhH
Confidence            368899999999986  6666664333335   344566766666553 366661              11 00001123


Q ss_pred             HHHHHhcCCC--CCeEEEEecCCCCccccc---CCCCCHHHH
Q psy7942         105 ADILAEYSVD--DDTVAIFKKFDEGRVNYE---GPASDEAAL  141 (216)
Q Consensus       105 ~~v~~~~~v~--~p~i~~~~~~de~~~~y~---G~~~~~~~l  141 (216)
                      ..+++++||.  .|.++++++   +..+|+   ++. +.+.|
T Consensus        67 n~IAe~~~V~HeSPQ~ili~~---g~~v~~aSH~~I-t~~~l  104 (105)
T PF11009_consen   67 NAIAEDFGVKHESPQVILIKN---GKVVWHASHWDI-TAEAL  104 (105)
T ss_dssp             HHHHHHHT----SSEEEEEET---TEEEEEEEGGG--SHHHH
T ss_pred             HHHHHHhCCCcCCCcEEEEEC---CEEEEECccccC-CHHhc
Confidence            4578999998  499999995   356664   334 55544

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=94.07  E-value=0.75  Score=33.56  Aligned_cols=96  Identities=16%  Similarity=0.105  Sum_probs=55.2

Q ss_pred             CCCeEEEEEecCCChh---HHHHHHHHHhhCCCceEEecchhhHHHHhhhhcccc-ceeeecccHHHHHhcCCCC-CeEE
Q psy7942          45 DSKVVVAGLFKDASSE---LAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDD-LVFVTSTNADILAEYSVDD-DTVA  119 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~~---~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~-~~~~~t~~~~v~~~~~v~~-p~i~  119 (216)
                      ..++++|.|+.++|..   ..+.+..++..+..+.+....+....+...+.+.+- .-++...+..+++.|++.. |+++
T Consensus        19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~   98 (123)
T cd03011          19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAIV   98 (123)
T ss_pred             CCCEEEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEEE
Confidence            4478888888888743   334555555554322232212223334444433321 1222344567899999986 9999


Q ss_pred             EEecCCCCcccccCCCCCHHHHH
Q psy7942         120 IFKKFDEGRVNYEGPASDEAALR  142 (216)
Q Consensus       120 ~~~~~de~~~~y~G~~~~~~~l~  142 (216)
                      ++.+.. ....+.|-. +.+.|.
T Consensus        99 vid~~g-i~~~~~g~~-~~~~~~  119 (123)
T cd03011          99 IVDPGG-IVFVTTGVT-SEWGLR  119 (123)
T ss_pred             EEcCCC-eEEEEeccC-CHHHHH
Confidence            998643 444567777 777664

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=94.03  E-value=0.67  Score=43.38  Aligned_cols=104  Identities=12%  Similarity=0.128  Sum_probs=66.2

Q ss_pred             HhCCCeEEEEEecCCCh---hHHHHHHHHHhhC--CCceE-Eec------chhhHHHHhhhhccc--cceeeecccHHHH
Q psy7942          43 IADSKVVVAGLFKDASS---ELAKTFNEIASKV--DDLVF-DAS------SELAKTFNEIASKVD--DLVFVTSTNADIL  108 (216)
Q Consensus        43 ~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~--~~~~F-~~~------~~~~~~~~~~~~~~~--~~~~~~t~~~~v~  108 (216)
                      ++..++++|.|+++||.   ...+.+.++++++  +++.| +++      ......+.+..+.++  ...++...+..++
T Consensus        53 lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~la  132 (521)
T PRK14018         53 LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLA  132 (521)
T ss_pred             ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHH
Confidence            34678999999999984   5566777777776  34443 222      112234444443332  1112234567789


Q ss_pred             HhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942         109 AEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       109 ~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                      +.|++.. |+++++-+...-...+.|.. +.+.|..+|..
T Consensus       133 k~fgV~giPTt~IIDkdGkIV~~~~G~~-~~eeL~a~Ie~  171 (521)
T PRK14018        133 QSLNISVYPSWAIIGKDGDVQRIVKGSI-SEAQALALIRN  171 (521)
T ss_pred             HHcCCCCcCeEEEEcCCCeEEEEEeCCC-CHHHHHHHHHH
Confidence            9999986 99977654223234567988 89999999983

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=93.96  E-value=0.22  Score=35.11  Aligned_cols=59  Identities=14%  Similarity=0.134  Sum_probs=44.7

Q ss_pred             eeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccC--ceEEEEcCCCC
Q psy7942         153 VVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFRE--KEEQDEDDDQP  211 (216)
Q Consensus       153 v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~--~~~f~~~d~~~  211 (216)
                      |.+++..++.......-...++.|+.++.+.+..+...+.++|+.+++  ++.|..+|...
T Consensus         2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~   62 (104)
T cd02995           2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATA   62 (104)
T ss_pred             eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcc
Confidence            567888888776654323446668888888889999999999999987  57887777543

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=93.81  E-value=0.64  Score=34.28  Aligned_cols=90  Identities=24%  Similarity=0.258  Sum_probs=53.8

Q ss_pred             HHHHHhHhCCCeEEEEEec-----CCC-hhHHHHHHHHHhhCC--CceEEecchhhHHHHhhhhccccceeeecccHHHH
Q psy7942          37 DEIKAFIADSKVVVAGLFK-----DAS-SELAKTFNEIASKVD--DLVFDASSELAKTFNEIASKVDDLVFVTSTNADIL  108 (216)
Q Consensus        37 ~~~~~~~~~~~v~~V~f~~-----~~~-~~~~~~f~~~A~~~~--~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~  108 (216)
                      ++...+. ..+++++++-.     +.+ ......|.++|+.+.  .+.|..              +|     ......++
T Consensus         7 en~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~--------------~D-----~~~~~~~l   66 (111)
T cd03073           7 DNRAQFT-KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAV--------------AD-----KEDFSHEL   66 (111)
T ss_pred             chHHHhc-cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEE--------------Ec-----HHHHHHHH
Confidence            4444443 55555555422     111 356779999999994  788872              22     22222367


Q ss_pred             HhcCCC-----CCeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942         109 AEYSVD-----DDTVAIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       109 ~~~~v~-----~p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                      +.+|++     .|++++... ++.....++++.+.++|.+|+..
T Consensus        67 ~~fgl~~~~~~~P~~~i~~~-~~~KY~~~~~~~t~e~i~~F~~~  109 (111)
T cd03073          67 EEFGLDFSGGEKPVVAIRTA-KGKKYVMEEEFSDVDALEEFLED  109 (111)
T ss_pred             HHcCCCcccCCCCEEEEEeC-CCCccCCCcccCCHHHHHHHHHH
Confidence            788876     488888774 22222235554367899999875

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=93.71  E-value=0.4  Score=31.26  Aligned_cols=53  Identities=17%  Similarity=0.276  Sum_probs=37.5

Q ss_pred             EEEEEecCCC---hhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeEEE
Q psy7942          49 VVAGLFKDAS---SELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAI  120 (216)
Q Consensus        49 ~~V~f~~~~~---~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~  120 (216)
                      -++.|+.++|   ....+.+.+++...+.+.|.              .+|     ...++++++++++.. |++++
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~--------------~id-----~~~~~~l~~~~~i~~vPti~i   58 (67)
T cd02973           2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAE--------------MID-----AAEFPDLADEYGVMSVPAIVI   58 (67)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEE--------------EEE-----cccCHhHHHHcCCcccCEEEE
Confidence            3556777776   45556677777666678887              444     556688999999965 99876

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=93.51  E-value=0.85  Score=32.78  Aligned_cols=87  Identities=16%  Similarity=0.141  Sum_probs=53.3

Q ss_pred             CCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCce-EEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeE
Q psy7942          45 DSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLV-FDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTV  118 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~-F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i  118 (216)
                      +.++++|.|+.+||.   ...+.+.+++..+ +.+. ++++......+++.+.+..-.-+-...+..+.+.|++.. |+.
T Consensus        20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~   99 (114)
T cd02967          20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYA   99 (114)
T ss_pred             CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeE
Confidence            467888889999874   4556777776665 3343 344444455666666555421010122456888888875 998


Q ss_pred             EEEecCCCCcccccC
Q psy7942         119 AIFKKFDEGRVNYEG  133 (216)
Q Consensus       119 ~~~~~~de~~~~y~G  133 (216)
                      +++.+  ++.+.|.|
T Consensus       100 ~vid~--~G~v~~~~  112 (114)
T cd02967         100 VLLDE--AGVIAAKG  112 (114)
T ss_pred             EEECC--CCeEEecc
Confidence            88874  34666654

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=93.25  E-value=3.6  Score=38.25  Aligned_cols=96  Identities=7%  Similarity=0.032  Sum_probs=69.6

Q ss_pred             CCeEEEEecCCCCcccccCCCCCHHHHHHHHhh---cCCCceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHH
Q psy7942         115 DDTVAIFKKFDEGRVNYEGPASDEAALRKFLST---QSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPV  191 (216)
Q Consensus       115 ~p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~---~~~P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l  191 (216)
                      .|++.+.+......+.|.|-. .-.++..||..   .+-| -..++++....+-.-+.+.++.+|...+++.++...+.+
T Consensus        62 ~p~~~~~~~~~~~~i~f~g~P-~g~Ef~s~i~~i~~~~~~-~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~  139 (515)
T TIGR03140        62 KPSFTILRDGADTGIRFAGIP-GGHEFTSLVLAILQVGGH-GPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQAL  139 (515)
T ss_pred             CCeEEEecCCcccceEEEecC-CcHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHH
Confidence            499988765444568899976 55566666654   3444 366777777766654445668889998888889999999


Q ss_pred             HHHHHhccCceEEEEcCCCCCc
Q psy7942         192 QTVAKDFREKEEQDEDDDQPKR  213 (216)
Q Consensus       192 ~~vA~~~r~~~~f~~~d~~~~~  213 (216)
                      .++|..+. ++..-++|.+.+-
T Consensus       140 ~~~a~~~p-~i~~~~id~~~~~  160 (515)
T TIGR03140       140 NQMALLNP-NISHTMIDGALFQ  160 (515)
T ss_pred             HHHHHhCC-CceEEEEEchhCH
Confidence            99999887 7888888877653

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=92.48  E-value=0.52  Score=33.11  Aligned_cols=59  Identities=22%  Similarity=0.333  Sum_probs=44.4

Q ss_pred             eeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhcc--CceEEEEcCCCC
Q psy7942         153 VVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFR--EKEEQDEDDDQP  211 (216)
Q Consensus       153 v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r--~~~~f~~~d~~~  211 (216)
                      +.+++.+++.........+.++.|.........++...+..++++++  +++.+..+|...
T Consensus         2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~   62 (105)
T cd02998           2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADE   62 (105)
T ss_pred             eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCC
Confidence            46778888887766542344666877777778889999999999997  568888887654

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=92.46  E-value=0.35  Score=34.03  Aligned_cols=56  Identities=20%  Similarity=0.316  Sum_probs=44.6

Q ss_pred             eeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccC---ceEEEEcCCC
Q psy7942         153 VVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFRE---KEEQDEDDDQ  210 (216)
Q Consensus       153 v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~---~~~f~~~d~~  210 (216)
                      +.+++.+++......+  +.++.|+.............+.++|+++++   ++.+..+|..
T Consensus         2 ~~~l~~~~f~~~~~~~--~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~   60 (102)
T cd03005           2 VLELTEDNFDHHIAEG--NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCT   60 (102)
T ss_pred             eeECCHHHHHHHhhcC--CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECC
Confidence            5678888888777655  356668888888888899999999999987   6888887754

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=92.37  E-value=0.6  Score=34.62  Aligned_cols=68  Identities=19%  Similarity=0.132  Sum_probs=41.1

Q ss_pred             HHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccH-HHHHhc
Q psy7942          37 DEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNA-DILAEY  111 (216)
Q Consensus        37 ~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~-~v~~~~  111 (216)
                      +.++.....+++++|-|+++||.   .+.+.|.+.+... ....|.              .++     ...+. ...+.|
T Consensus        10 ~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv--------------~v~-----vd~~~~~~~~~~   70 (117)
T cd02959          10 DGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFV--------------MVN-----LEDDEEPKDEEF   70 (117)
T ss_pred             HHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEE--------------EEE-----ecCCCCchhhhc
Confidence            44555666789999999999984   4455666655432 222343              111     22222 345677


Q ss_pred             CCC---CCeEEEEec
Q psy7942         112 SVD---DDTVAIFKK  123 (216)
Q Consensus       112 ~v~---~p~i~~~~~  123 (216)
                      ++.   .|++++|.+
T Consensus        71 ~~~g~~vPt~~f~~~   85 (117)
T cd02959          71 SPDGGYIPRILFLDP   85 (117)
T ss_pred             ccCCCccceEEEECC
Confidence            775   499999974

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=92.36  E-value=0.38  Score=35.64  Aligned_cols=58  Identities=7%  Similarity=-0.032  Sum_probs=43.2

Q ss_pred             eeeeCcchHHHhhccCCcceEEEEEeC--CccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         153 VVEFNHETAQKIFGGEIKSHLLVFFSK--AAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       153 v~~~~~~~~~~~~~~~~~~~lllf~~~--~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      .++++..|+....+.+ ...++.|...  ..+++..+...|.++|++|.+++.|+.+|...
T Consensus        12 ~~~~~~~~~~~~~~~~-~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~   71 (111)
T cd02965          12 WPRVDAATLDDWLAAG-GDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD   71 (111)
T ss_pred             CcccccccHHHHHhCC-CCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC
Confidence            3467777777766665 3456667665  36788899999999999999998887776543

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=92.33  E-value=0.44  Score=34.29  Aligned_cols=58  Identities=12%  Similarity=0.118  Sum_probs=43.3

Q ss_pred             ceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhcc------CceEEEEcCCC
Q psy7942         152 LVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFR------EKEEQDEDDDQ  210 (216)
Q Consensus       152 ~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r------~~~~f~~~d~~  210 (216)
                      -+.+++.+++...++.+ +..++.|+.+.......+...+.++|+.++      +++.|..+|-.
T Consensus         2 ~v~~l~~~~f~~~i~~~-~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d   65 (108)
T cd02996           2 EIVSLTSGNIDDILQSA-ELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCD   65 (108)
T ss_pred             ceEEcCHhhHHHHHhcC-CEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECC
Confidence            36788999998888665 444556888888888888999999998763      35777777644

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=92.18  E-value=3.3  Score=33.22  Aligned_cols=101  Identities=12%  Similarity=0.107  Sum_probs=60.4

Q ss_pred             CCCeEEEEEecCCChhH---HHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeEE
Q psy7942          45 DSKVVVAGLFKDASSEL---AKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVA  119 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~~~---~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~  119 (216)
                      .+++++|.|+.+||...   .+.+.++.++. .++. +++....+...+.+.+..-.......+.++.+.|++.. |+.+
T Consensus        73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv-~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~  151 (189)
T TIGR02661        73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVV-MISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV  151 (189)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEE-EEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence            45788889999998544   45555555444 2333 34444444444444443211011234678889999875 9877


Q ss_pred             EEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         120 IFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       120 ~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ++-+  ++.+.+.|.....+.+.+++...
T Consensus       152 lID~--~G~I~~~g~~~~~~~le~ll~~l  178 (189)
T TIGR02661       152 LLDQ--DGKIRAKGLTNTREHLESLLEAD  178 (189)
T ss_pred             EECC--CCeEEEccCCCCHHHHHHHHHHH
Confidence            7664  34667777654667788887643

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=92.00  E-value=0.38  Score=33.62  Aligned_cols=54  Identities=17%  Similarity=0.236  Sum_probs=41.2

Q ss_pred             eCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccC--ceEEEEcCCC
Q psy7942         156 FNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFRE--KEEQDEDDDQ  210 (216)
Q Consensus       156 ~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~--~~~f~~~d~~  210 (216)
                      ++.+++......+ ++.++.|..++......+...+.++|+.+.+  ++.+..+|..
T Consensus         1 l~~~~~~~~~~~~-~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~   56 (102)
T TIGR01126         1 LTASNFDDIVLSN-KDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT   56 (102)
T ss_pred             CchhhHHHHhccC-CcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc
Confidence            3556777766644 3556778888887788888999999999987  6888887764

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>TIGR01068 thioredoxin thioredoxin

Probab=91.84  E-value=0.45  Score=33.08  Aligned_cols=55  Identities=13%  Similarity=0.128  Sum_probs=39.2

Q ss_pred             CcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         157 NHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       157 ~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      +.+++...........++.|...+..........++++++++.+++.|+.+|...
T Consensus         2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~   56 (101)
T TIGR01068         2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDE   56 (101)
T ss_pred             CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCC
Confidence            3445555444432345666777777777888899999999999889999988643

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>PRK09381 trxA thioredoxin; Provisional

Probab=91.75  E-value=0.58  Score=33.62  Aligned_cols=58  Identities=9%  Similarity=0.216  Sum_probs=43.3

Q ss_pred             ceeeeCcchHHH-hhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         152 LVVEFNHETAQK-IFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       152 ~v~~~~~~~~~~-~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      -+.+++.+++.. +...+ .+.++.|..++.+........++++|+++++++.+..+|..
T Consensus         4 ~v~~~~~~~~~~~v~~~~-~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~   62 (109)
T PRK09381          4 KIIHLTDDSFDTDVLKAD-GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID   62 (109)
T ss_pred             cceeeChhhHHHHHhcCC-CeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECC
Confidence            356777777764 44444 34566688888888889999999999999998877777654

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=91.39  E-value=0.68  Score=33.51  Aligned_cols=57  Identities=11%  Similarity=0.159  Sum_probs=43.4

Q ss_pred             eeeeCcchHHHhhc---cCCcceEEEEEeCCccchhhhhHHHHHHHHhccCc-eEEEEcCCC
Q psy7942         153 VVEFNHETAQKIFG---GEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREK-EEQDEDDDQ  210 (216)
Q Consensus       153 v~~~~~~~~~~~~~---~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~-~~f~~~d~~  210 (216)
                      |.+++.+++..+..   .+ ++.++.|+.++.+...++...+.++|+.++++ +.+..+|..
T Consensus         3 v~~~~~~~~~~~~~~~~~~-k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d   63 (109)
T cd02993           3 VVTLSRAEIEALAKGERRN-QSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNAD   63 (109)
T ss_pred             ceeccHHHHHHHHhhhhcC-CCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECC
Confidence            67888888877763   23 34566688888888899999999999999975 777776654

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=91.28  E-value=0.79  Score=33.42  Aligned_cols=59  Identities=8%  Similarity=0.038  Sum_probs=42.7

Q ss_pred             CceeeeCcchHHHhhccCC--cceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         151 PLVVEFNHETAQKIFGGEI--KSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       151 P~v~~~~~~~~~~~~~~~~--~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      ..+.+++++++........  .+.++.|+.++.+.+..+...++++|++|.+ +.|+.+|..
T Consensus         4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~   64 (113)
T cd02957           4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAE   64 (113)
T ss_pred             ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEch
Confidence            3567788777766554321  2445568888888888999999999999974 778887754

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=91.08  E-value=3.3  Score=32.03  Aligned_cols=102  Identities=14%  Similarity=0.166  Sum_probs=63.3

Q ss_pred             CCCeEEEEEecCCCh---hHHHHHHHHHhhCC--CceE-Ee-cchhhHHHHhhhhcccc-ceeeecccHHHHHhcCCCC-
Q psy7942          45 DSKVVVAGLFKDASS---ELAKTFNEIASKVD--DLVF-DA-SSELAKTFNEIASKVDD-LVFVTSTNADILAEYSVDD-  115 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~--~~~F-~~-~~~~~~~~~~~~~~~~~-~~~~~t~~~~v~~~~~v~~-  115 (216)
                      .++.++|.|+.++|.   .....+.++++++.  .+.+ ++ ++.....+.+...+.+- ...+...+..+.+.|++.. 
T Consensus        60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  139 (173)
T PRK03147         60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL  139 (173)
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence            467788889988874   34567777777762  2322 21 22333344444433322 1222344567889999986 


Q ss_pred             CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942         116 DTVAIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       116 p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                      |+++++.+...-...+.|.. +.+.+.+++..
T Consensus       140 P~~~lid~~g~i~~~~~g~~-~~~~l~~~l~~  170 (173)
T PRK03147        140 PTTFLIDKDGKVVKVITGEM-TEEQLEEYLEK  170 (173)
T ss_pred             CeEEEECCCCcEEEEEeCCC-CHHHHHHHHHH
Confidence            99988876333334678888 88889998865

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=91.02  E-value=1.1  Score=32.07  Aligned_cols=43  Identities=21%  Similarity=0.266  Sum_probs=27.6

Q ss_pred             cccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHH
Q psy7942         102 STNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFL  145 (216)
Q Consensus       102 t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi  145 (216)
                      +.+++++..+++.+ |+++++.+.......+.|-. +.+.|.+++
T Consensus        69 ~~~~~l~~~~~v~gtPt~~~~d~~G~~v~~~~G~~-~~~~l~~~L  112 (112)
T PF13098_consen   69 LSNKELAQRYGVNGTPTIVFLDKDGKIVYRIPGYL-SPEELLKML  112 (112)
T ss_dssp             HHHHHHHHHTT--SSSEEEECTTTSCEEEEEESS---HHHHHHHH
T ss_pred             HHHHHHHHHcCCCccCEEEEEcCCCCEEEEecCCC-CHHHHHhhC
Confidence            34567899999987 99999874222233468888 888888764

...

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=90.65  E-value=4  Score=29.94  Aligned_cols=95  Identities=7%  Similarity=0.039  Sum_probs=52.5

Q ss_pred             CCCeEEEEEecCCCh---hHHHHHHHHHhhCCCce-EEec-chhhHHHHhhhhcccc-c-eeeecccHHHHHhcCCCC-C
Q psy7942          45 DSKVVVAGLFKDASS---ELAKTFNEIASKVDDLV-FDAS-SELAKTFNEIASKVDD-L-VFVTSTNADILAEYSVDD-D  116 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~-F~~~-~~~~~~~~~~~~~~~~-~-~~~~t~~~~v~~~~~v~~-p  116 (216)
                      .+++++|.|+..||.   ...+.+.+++++++ +. ++++ ......+.+++.+..- . ......+..++..|++.. |
T Consensus        24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~-~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P  102 (127)
T cd03010          24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR-VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVP  102 (127)
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC-cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCC
Confidence            367889999999984   34556666666553 32 3333 2333444444433221 1 111334567888899876 9


Q ss_pred             eEEEEecCCCCcccccCCCCCHHHH
Q psy7942         117 TVAIFKKFDEGRVNYEGPASDEAAL  141 (216)
Q Consensus       117 ~i~~~~~~de~~~~y~G~~~~~~~l  141 (216)
                      +.+++.+...-...+.|.. +.+.|
T Consensus       103 ~~~~ld~~G~v~~~~~G~~-~~~~~  126 (127)
T cd03010         103 ETFLIDGDGIIRYKHVGPL-TPEVW  126 (127)
T ss_pred             eEEEECCCceEEEEEeccC-ChHhc
Confidence            6666653222234567877 65543

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=90.39  E-value=1  Score=31.57  Aligned_cols=58  Identities=22%  Similarity=0.301  Sum_probs=43.6

Q ss_pred             eeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhcc--CceEEEEcCCCC
Q psy7942         153 VVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFR--EKEEQDEDDDQP  211 (216)
Q Consensus       153 v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r--~~~~f~~~d~~~  211 (216)
                      +.++++.++......+ ++.++.|...+..........+..+++.+.  +.+.+..+|...
T Consensus         2 ~~~l~~~~~~~~~~~~-~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~   61 (104)
T cd02997           2 VVHLTDEDFRKFLKKE-KHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK   61 (104)
T ss_pred             eEEechHhHHHHHhhC-CCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC
Confidence            4677777887777665 355667888888778888999999999987  557777666553

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=90.20  E-value=0.9  Score=33.36  Aligned_cols=57  Identities=18%  Similarity=0.278  Sum_probs=42.7

Q ss_pred             ceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccC---ceEEEEcC
Q psy7942         152 LVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFRE---KEEQDEDD  208 (216)
Q Consensus       152 ~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~---~~~f~~~d  208 (216)
                      .+.+++..++......+..+.++.|+..+.+....+...+.++|+++++   .+.|..+|
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd   61 (114)
T cd02992           2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVD   61 (114)
T ss_pred             CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEe
Confidence            3678888888877665433455568888887788899999999998764   57777666

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=90.20  E-value=0.87  Score=31.24  Aligned_cols=55  Identities=18%  Similarity=0.274  Sum_probs=41.9

Q ss_pred             eeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhc--cCceEEEEcCCC
Q psy7942         155 EFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDF--REKEEQDEDDDQ  210 (216)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~--r~~~~f~~~d~~  210 (216)
                      +++..++......+ ++.++.|...+.+.+.++...++++|+.+  ++.+.|..+|..
T Consensus         2 ~l~~~~~~~~i~~~-~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~   58 (101)
T cd02961           2 ELTDDNFDELVKDS-KDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT   58 (101)
T ss_pred             cccHHHHHHHHhCC-CcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc
Confidence            45666777777665 34566687777777888999999999999  578888888754

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=90.03  E-value=5.3  Score=31.39  Aligned_cols=101  Identities=10%  Similarity=0.118  Sum_probs=56.3

Q ss_pred             CCCeEEEEEecCCChhH---HHHHHHHHhhCCCc-eEEecc-hhhHHHHhhhhcccc-c-eeeecccHHHHHhcCCCC-C
Q psy7942          45 DSKVVVAGLFKDASSEL---AKTFNEIASKVDDL-VFDASS-ELAKTFNEIASKVDD-L-VFVTSTNADILAEYSVDD-D  116 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~~~---~~~f~~~A~~~~~~-~F~~~~-~~~~~~~~~~~~~~~-~-~~~~t~~~~v~~~~~v~~-p  116 (216)
                      .+++++|.|+.+||...   .+.+.+++.+  .+ ..+++- ...+...+.+.+... . +.....+..+...|++.. |
T Consensus        62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P  139 (173)
T TIGR00385        62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAP  139 (173)
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCC
Confidence            57899999999998543   3445444443  22 233331 122222233333221 1 111334557888899876 9


Q ss_pred             eEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         117 TVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       117 ~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      +.+++.+...-...+.|.. +.+.+.+++...
T Consensus       140 ~~~~id~~G~i~~~~~G~~-~~~~l~~~l~~~  170 (173)
T TIGR00385       140 ETFLVDGNGVILYRHAGPL-NNEVWTEGFLPA  170 (173)
T ss_pred             eEEEEcCCceEEEEEeccC-CHHHHHHHHHHH
Confidence            7766654222233456888 889999988753

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>PRK10996 thioredoxin 2; Provisional

Probab=89.99  E-value=0.93  Score=34.56  Aligned_cols=57  Identities=16%  Similarity=0.181  Sum_probs=43.2

Q ss_pred             eeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         153 VVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       153 v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      +.+++.+++..+...+ +..++.|...+.+........|.++++++.+++.|+.+|..
T Consensus        37 ~i~~~~~~~~~~i~~~-k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~   93 (139)
T PRK10996         37 VINATGETLDKLLQDD-LPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTE   93 (139)
T ss_pred             CEEcCHHHHHHHHhCC-CeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCC
Confidence            3356667777776655 34466688877777888889999999999999999888754

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=89.28  E-value=0.81  Score=39.62  Aligned_cols=59  Identities=10%  Similarity=0.216  Sum_probs=44.6

Q ss_pred             CCceeeeCcchHHH-hhccCCcce-EEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcC
Q psy7942         150 LPLVVEFNHETAQK-IFGGEIKSH-LLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDD  208 (216)
Q Consensus       150 ~P~v~~~~~~~~~~-~~~~~~~~~-lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d  208 (216)
                      .|.+.++|..|+.. +.......+ ++.|..+.++.+.++...|.+++.+|+|++....+|
T Consensus        22 a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN   82 (304)
T COG3118          22 APGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVN   82 (304)
T ss_pred             cccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEec
Confidence            45588899888864 444333334 445888888889999999999999999998776554

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=88.93  E-value=8.3  Score=30.66  Aligned_cols=100  Identities=6%  Similarity=0.049  Sum_probs=55.6

Q ss_pred             CCCeEEEEEecCCChhH---HHHHHHHHhhCCCce-EEec-chhhHHHHhhhhcccc-c-eeeecccHHHHHhcCCCC-C
Q psy7942          45 DSKVVVAGLFKDASSEL---AKTFNEIASKVDDLV-FDAS-SELAKTFNEIASKVDD-L-VFVTSTNADILAEYSVDD-D  116 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~~~---~~~f~~~A~~~~~~~-F~~~-~~~~~~~~~~~~~~~~-~-~~~~t~~~~v~~~~~v~~-p  116 (216)
                      ..++++|.|+..||...   .+.+.+++.+  .+. .+++ ++......+...+... . +.....+..+...|++.. |
T Consensus        67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P  144 (185)
T PRK15412         67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP  144 (185)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence            57889999999998544   4455555432  222 2333 2221222222222221 1 112333455777899876 9


Q ss_pred             eEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942         117 TVAIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       117 ~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                      +..++-+...-...+.|.. +.+.+.++|..
T Consensus       145 ~t~vid~~G~i~~~~~G~~-~~~~l~~~i~~  174 (185)
T PRK15412        145 ETFLIDGNGIIRYRHAGDL-NPRVWESEIKP  174 (185)
T ss_pred             eEEEECCCceEEEEEecCC-CHHHHHHHHHH
Confidence            7777664223244567888 88888888765

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=88.80  E-value=1.9  Score=31.66  Aligned_cols=58  Identities=10%  Similarity=0.024  Sum_probs=42.5

Q ss_pred             ceeeeCc-chHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         152 LVVEFNH-ETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       152 ~v~~~~~-~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      .+.+++. +.+......+ ...++.|+.++.+.+..+...+.++|++|.+ +.|+.+|...
T Consensus         5 ~v~~i~~~~~~~~~i~~~-~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~   63 (113)
T cd02989           5 KYREVSDEKEFFEIVKSS-ERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEK   63 (113)
T ss_pred             CeEEeCCHHHHHHHHhCC-CcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEccc
Confidence            4556665 5666665554 3456668888878888899999999999975 7888888654

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=88.63  E-value=1.5  Score=30.87  Aligned_cols=55  Identities=15%  Similarity=0.126  Sum_probs=43.5

Q ss_pred             eeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccC-ceEEEEcCCC
Q psy7942         153 VVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFRE-KEEQDEDDDQ  210 (216)
Q Consensus       153 v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~-~~~f~~~d~~  210 (216)
                      |.+++.+++..+..+.   .++.|+.+..+........+.++|+.+++ ++.+..+|..
T Consensus         3 v~~l~~~~f~~~~~~~---~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~   58 (101)
T cd02994           3 VVELTDSNWTLVLEGE---WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVT   58 (101)
T ss_pred             eEEcChhhHHHHhCCC---EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEcc
Confidence            6788999998877542   46678888888888899999999998875 4888777654

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=88.52  E-value=7.6  Score=28.12  Aligned_cols=90  Identities=16%  Similarity=0.213  Sum_probs=51.8

Q ss_pred             HHHHhHhCCCeEEEEEecCCChhHH----HHH--HHHHhhC-CCceEEecchhhHHHHhhhhccccceeeec--ccHHHH
Q psy7942          38 EIKAFIADSKVVVAGLFKDASSELA----KTF--NEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTS--TNADIL  108 (216)
Q Consensus        38 ~~~~~~~~~~v~~V~f~~~~~~~~~----~~f--~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t--~~~~v~  108 (216)
                      .++...+.++.++|.+..++|....    ..|  .++.+.+ .++.+.              .+|     .+  ....++
T Consensus         9 a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~--------------~~d-----~~~~e~~~~~   69 (114)
T cd02958           9 AKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFW--------------QCD-----IDSSEGQRFL   69 (114)
T ss_pred             HHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEE--------------Eec-----CCCccHHHHH
Confidence            3344556789999999988873221    122  1122222 233322              111     11  233577


Q ss_pred             HhcCCCC-CeEEEEecC-CCCcccccCCCCCHHHHHHHHhh
Q psy7942         109 AEYSVDD-DTVAIFKKF-DEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       109 ~~~~v~~-p~i~~~~~~-de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                      ..|++.. |+++++.+. .+....+.|.. +.+.+.+-++.
T Consensus        70 ~~~~~~~~P~~~~i~~~~g~~l~~~~G~~-~~~~f~~~L~~  109 (114)
T cd02958          70 QSYKVDKYPHIAIIDPRTGEVLKVWSGNI-TPEDLLSQLIE  109 (114)
T ss_pred             HHhCccCCCeEEEEeCccCcEeEEEcCCC-CHHHHHHHHHH
Confidence            8888876 999999863 33344567888 77777766554

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=87.97  E-value=4.7  Score=29.76  Aligned_cols=78  Identities=15%  Similarity=0.204  Sum_probs=44.0

Q ss_pred             CCCeEEEEEecCCCh---hHHHHHHHHHhhC-C---Cce--EEecchhhHHHHhhhhccccceee---e-cccHHHHHhc
Q psy7942          45 DSKVVVAGLFKDASS---ELAKTFNEIASKV-D---DLV--FDASSELAKTFNEIASKVDDLVFV---T-STNADILAEY  111 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~---~~~--F~~~~~~~~~~~~~~~~~~~~~~~---~-t~~~~v~~~~  111 (216)
                      .+++++|.|+.+||.   ...+.+.++..++ +   .+.  +..-+...+.|.+...+..- ..+   . ..+..+++.|
T Consensus        17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   95 (131)
T cd03009          17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPW-LAVPFSDRERRSRLNRTF   95 (131)
T ss_pred             CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCe-eEcccCCHHHHHHHHHHc
Confidence            467899999999974   3445566555554 1   222  22112233455544443321 000   0 1124678899


Q ss_pred             CCCC-CeEEEEec
Q psy7942         112 SVDD-DTVAIFKK  123 (216)
Q Consensus       112 ~v~~-p~i~~~~~  123 (216)
                      ++.. |+++++.+
T Consensus        96 ~v~~~P~~~lid~  108 (131)
T cd03009          96 KIEGIPTLIILDA  108 (131)
T ss_pred             CCCCCCEEEEECC
Confidence            9986 99999975

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>KOG2603|consensus

Probab=87.48  E-value=7.5  Score=34.00  Aligned_cols=105  Identities=10%  Similarity=0.232  Sum_probs=71.0

Q ss_pred             hhCCCceeecCHHHHHHhHhC--CCeEEEEEecCC--------ChhHHHHHHHHHhhC-C--------CceEEecchhhH
Q psy7942          25 KTGPPAKEFTSVDEIKAFIAD--SKVVVAGLFKDA--------SSELAKTFNEIASKV-D--------DLVFDASSELAK   85 (216)
Q Consensus        25 ~~~~~v~~l~s~~~~~~~~~~--~~v~~V~f~~~~--------~~~~~~~f~~~A~~~-~--------~~~F~~~~~~~~   85 (216)
                      .....|..++ .+.+.+|+..  .+..+|.+|.-.        |.+..++|.-+|..+ .        .+.|+       
T Consensus        37 ts~~~VI~~n-~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~-------  108 (331)
T KOG2603|consen   37 TSESGVIRMN-DDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFC-------  108 (331)
T ss_pred             cCCCCeEEec-CcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEE-------
Confidence            3345677786 4788999885  455666666432        356779999999865 1        23455       


Q ss_pred             HHHhhhhccccceeeecccHHHHHhcCCCC-CeEEEEecCCCC---cccccC---CCCCHHHHHHHHhhcCC
Q psy7942          86 TFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAIFKKFDEG---RVNYEG---PASDEAALRKFLSTQSL  150 (216)
Q Consensus        86 ~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~~de~---~~~y~G---~~~~~~~l~~fi~~~~~  150 (216)
                             .||     ....+++.+.+++.. |.+++|++-.++   ...+++   .+ +.+.+.+|+...+-
T Consensus       109 -------~Vd-----~~e~p~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~-~Ae~iaqfv~~~tk  167 (331)
T KOG2603|consen  109 -------MVD-----YDESPQVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGF-EAEQIAQFVADRTK  167 (331)
T ss_pred             -------EEe-----ccccHHHHHHhcccCCCeEEEeCCCccccccCccchhhhcch-hHHHHHHHHHHhhh
Confidence                   455     667788999999875 999999754322   223332   23 68999999988653

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=87.45  E-value=1.7  Score=33.93  Aligned_cols=59  Identities=10%  Similarity=0.097  Sum_probs=43.4

Q ss_pred             ceeeeCcchHHHhhccCC-cceEEEEEeCCccchhhhhHHHHHHHHhccC-ceEEEEcCCC
Q psy7942         152 LVVEFNHETAQKIFGGEI-KSHLLVFFSKAAGHYESHFEPVQTVAKDFRE-KEEQDEDDDQ  210 (216)
Q Consensus       152 ~v~~~~~~~~~~~~~~~~-~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~-~~~f~~~d~~  210 (216)
                      .+.+++.+++......+. .+.++.|+.++.+........+.++|+++.+ ++.|+.+|-.
T Consensus        29 ~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd   89 (152)
T cd02962          29 HIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIG   89 (152)
T ss_pred             ccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECC
Confidence            466777777776554321 2345558888888889999999999999985 4888888854

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>KOG1672|consensus

Probab=86.74  E-value=3.2  Score=33.84  Aligned_cols=76  Identities=20%  Similarity=0.259  Sum_probs=54.5

Q ss_pred             ceeecCHHHHHHhHhCCCeEEEEEecCC---ChhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecccHH
Q psy7942          30 AKEFTSVDEIKAFIADSKVVVAGLFKDA---SSELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNAD  106 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~---~~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~  106 (216)
                      ...+.|..++-.......-+++-||.+.   |...-+-+..+|.++-+..|.              .|+     +-.-|=
T Consensus        68 y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFi--------------kvn-----ae~~PF  128 (211)
T KOG1672|consen   68 YEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFI--------------KVN-----AEKAPF  128 (211)
T ss_pred             EEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEE--------------EEe-----cccCce
Confidence            4677777777777766666777777664   566677888899999777887              332     223344


Q ss_pred             HHHhcCCCC-CeEEEEecC
Q psy7942         107 ILAEYSVDD-DTVAIFKKF  124 (216)
Q Consensus       107 v~~~~~v~~-p~i~~~~~~  124 (216)
                      ++.+++++. |+|++|++.
T Consensus       129 lv~kL~IkVLP~v~l~k~g  147 (211)
T KOG1672|consen  129 LVTKLNIKVLPTVALFKNG  147 (211)
T ss_pred             eeeeeeeeEeeeEEEEEcC
Confidence            567788874 999999963

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=86.07  E-value=2.3  Score=31.63  Aligned_cols=41  Identities=12%  Similarity=-0.099  Sum_probs=33.4

Q ss_pred             ceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         171 SHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       171 ~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      +.++-|.....+.+..+...|.++|.+|.+.+.|+.+|-..
T Consensus        16 ~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~   56 (114)
T cd02954          16 VVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE   56 (114)
T ss_pred             EEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC
Confidence            34555888888888899999999999999988888777543

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=85.96  E-value=11  Score=27.95  Aligned_cols=79  Identities=18%  Similarity=0.249  Sum_probs=44.7

Q ss_pred             CCCeEEEEEecCCCh---hHHHHHHHHHhhC-C---Cc--eEEecchhhHHHHhhhhccccceeeecc----cHHHHHhc
Q psy7942          45 DSKVVVAGLFKDASS---ELAKTFNEIASKV-D---DL--VFDASSELAKTFNEIASKVDDLVFVTST----NADILAEY  111 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~---~~--~F~~~~~~~~~~~~~~~~~~~~~~~~t~----~~~v~~~~  111 (216)
                      .+++++|.|+..||.   ...+.+.++++++ +   .+  .+...++....+...+.+......+...    ...+++.|
T Consensus        16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   95 (132)
T cd02964          16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF   95 (132)
T ss_pred             CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence            468999999999984   4455666666655 2   22  2222233334444444444311111111    23567779


Q ss_pred             CCCC-CeEEEEec
Q psy7942         112 SVDD-DTVAIFKK  123 (216)
Q Consensus       112 ~v~~-p~i~~~~~  123 (216)
                      ++.. |+++++.+
T Consensus        96 ~v~~iPt~~lid~  108 (132)
T cd02964          96 KVEGIPTLVVLKP  108 (132)
T ss_pred             CCCCCCEEEEECC
Confidence            9886 99999875

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=85.90  E-value=2.4  Score=30.97  Aligned_cols=58  Identities=16%  Similarity=0.200  Sum_probs=38.8

Q ss_pred             ceeeeCc-chHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         152 LVVEFNH-ETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       152 ~v~~~~~-~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      ++..++. ..+.+++... ...+++|. .+..+....+..++.+|++-+|.=+.+|+|-..
T Consensus         2 ~ie~i~d~KdfKKLLRTr-~NVLvLy~-ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd   60 (112)
T cd03067           2 LIEDISDHKDFKKLLRTR-NNVLVLYS-KSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGD   60 (112)
T ss_pred             ccccccchHHHHHHHhhc-CcEEEEEe-cchhhHHHHHHHHHHHHHHhcCceeEEEEecCC
Confidence            3444443 3566777764 33344454 444556788999999999999998777877543

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=85.65  E-value=12  Score=29.17  Aligned_cols=92  Identities=10%  Similarity=0.136  Sum_probs=50.5

Q ss_pred             CCCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecc--hhhHHHHhhhhccccceeeecccHHHH-Hhc---CCCC
Q psy7942          45 DSKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASS--ELAKTFNEIASKVDDLVFVTSTNADIL-AEY---SVDD  115 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~--~~~~~~~~~~~~~~~~~~~~t~~~~v~-~~~---~v~~  115 (216)
                      ..+..+|.|+.+||.   .+.+.+.++++++..-..+++-  ...+.|..         . ...+.... ..+   ++..
T Consensus        49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~---------~-~~~~~~~~~~~~~~~~v~~  118 (153)
T TIGR02738        49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPD---------P-LPATPEVMQTFFPNPRPVV  118 (153)
T ss_pred             cCCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCccccccc---------c-cCCchHHHHHHhccCCCCC
Confidence            456679999999984   5566778888776311112110  00000000         0 11122333 344   5654


Q ss_pred             -CeEEEEecCCCC-cccccCCCCCHHHHHHHHhh
Q psy7942         116 -DTVAIFKKFDEG-RVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       116 -p~i~~~~~~de~-~~~y~G~~~~~~~l~~fi~~  147 (216)
                       |+.+++.+.... ...+.|.. +.+.|.+.|..
T Consensus       119 iPTt~LID~~G~~i~~~~~G~~-s~~~l~~~I~~  151 (153)
T TIGR02738       119 TPATFLVNVNTRKAYPVLQGAV-DEAELANRMDE  151 (153)
T ss_pred             CCeEEEEeCCCCEEEEEeeccc-CHHHHHHHHHH
Confidence             999999863232 23568988 88888887754

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=85.42  E-value=2.6  Score=35.07  Aligned_cols=60  Identities=13%  Similarity=0.196  Sum_probs=46.2

Q ss_pred             CceeeeCcchHHHhhccC----CcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         151 PLVVEFNHETAQKIFGGE----IKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       151 P~v~~~~~~~~~~~~~~~----~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      ..+.+++.+++.......    -.+.++.|+.++.++.......+.++|+++++.+.+..+|..
T Consensus        30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~   93 (224)
T PTZ00443         30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDAT   93 (224)
T ss_pred             CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCc
Confidence            457888988888765321    124466688888888889999999999999999888877754

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=85.39  E-value=2.7  Score=30.04  Aligned_cols=51  Identities=10%  Similarity=0.037  Sum_probs=35.5

Q ss_pred             chHHHhhccC-CcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         159 ETAQKIFGGE-IKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       159 ~~~~~~~~~~-~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      +.+...+... -++.++.|..++..........|.++|++| +.+.|+.+|..
T Consensus         4 ~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d   55 (103)
T cd02985           4 EELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGD   55 (103)
T ss_pred             HHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECC
Confidence            3444444432 134455588888877888899999999999 67888877754

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=85.16  E-value=3.3  Score=28.71  Aligned_cols=41  Identities=5%  Similarity=0.118  Sum_probs=34.0

Q ss_pred             ceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         171 SHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       171 ~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      +.++.|..++..........+.++++++.+.+.+..+|...
T Consensus        14 ~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~   54 (96)
T cd02956          14 PVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA   54 (96)
T ss_pred             eEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC
Confidence            45666888888888899999999999999888888887654

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=85.12  E-value=2.9  Score=29.37  Aligned_cols=49  Identities=16%  Similarity=0.175  Sum_probs=36.1

Q ss_pred             HHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         162 QKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       162 ~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      ...+..+-++.++.|..............+.++++++.+++.+..+|..
T Consensus         6 ~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d   54 (97)
T cd02949           6 RKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID   54 (97)
T ss_pred             HHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC
Confidence            3344444344455677777777788889999999999988888888864

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=85.09  E-value=5.1  Score=27.74  Aligned_cols=78  Identities=12%  Similarity=0.197  Sum_probs=43.5

Q ss_pred             CCeEEEEEecCCCh---hHHHHHHHHHhhC--CCceEEe--cch-hhHHHHhhhhcccc-ceeeecccHHHHHhcCCCC-
Q psy7942          46 SKVVVAGLFKDASS---ELAKTFNEIASKV--DDLVFDA--SSE-LAKTFNEIASKVDD-LVFVTSTNADILAEYSVDD-  115 (216)
Q Consensus        46 ~~v~~V~f~~~~~~---~~~~~f~~~A~~~--~~~~F~~--~~~-~~~~~~~~~~~~~~-~~~~~t~~~~v~~~~~v~~-  115 (216)
                      ++.++|.|+..||.   ...+.+.++..++  +++.+..  ++. ....+.+.+++..- ..+....+..+.+.|++.. 
T Consensus        19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (116)
T cd02966          19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL   98 (116)
T ss_pred             CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence            67888888888863   4455666666666  4454431  111 14444444444421 1111223456778888754 


Q ss_pred             CeEEEEec
Q psy7942         116 DTVAIFKK  123 (216)
Q Consensus       116 p~i~~~~~  123 (216)
                      |+++++.+
T Consensus        99 P~~~l~d~  106 (116)
T cd02966          99 PTTFLIDR  106 (116)
T ss_pred             ceEEEECC
Confidence            88887764

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PF13728 TraF: F plasmid transfer operon protein

Probab=84.91  E-value=11  Score=30.97  Aligned_cols=85  Identities=12%  Similarity=0.069  Sum_probs=51.8

Q ss_pred             CCCeEEEEEecCCC---hhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccc---eee-ecccHHHHHhcCCCC-C
Q psy7942          45 DSKVVVAGLFKDAS---SELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDL---VFV-TSTNADILAEYSVDD-D  116 (216)
Q Consensus        45 ~~~v~~V~f~~~~~---~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~---~~~-~t~~~~v~~~~~v~~-p  116 (216)
                      .++..++.||.+.|   ....+....++.++.--.+++             .+|..   .+- ...++.+++++++.. |
T Consensus       119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~v-------------s~DG~~~~~fp~~~~~~g~~~~l~v~~~P  185 (215)
T PF13728_consen  119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPV-------------SLDGRPIPSFPNPRPDPGQAKRLGVKVTP  185 (215)
T ss_pred             hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEE-------------ecCCCCCcCCCCCCCCHHHHHHcCCCcCC
Confidence            37888999998876   455667777787762111221             12210   000 123678899999985 9


Q ss_pred             eEEEEecCCC-CcccccCCCCCHHHHHH
Q psy7942         117 TVAIFKKFDE-GRVNYEGPASDEAALRK  143 (216)
Q Consensus       117 ~i~~~~~~de-~~~~y~G~~~~~~~l~~  143 (216)
                      ++++..+... -..+=.|-. +.+.|.+
T Consensus       186 al~Lv~~~~~~~~pv~~G~~-s~~~L~~  212 (215)
T PF13728_consen  186 ALFLVNPNTKKWYPVSQGFM-SLDELED  212 (215)
T ss_pred             EEEEEECCCCeEEEEeeecC-CHHHHHH
Confidence            9998886442 233346777 7777654

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=83.85  E-value=3.7  Score=28.41  Aligned_cols=52  Identities=13%  Similarity=0.077  Sum_probs=37.1

Q ss_pred             chHHHhhccC-CcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         159 ETAQKIFGGE-IKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       159 ~~~~~~~~~~-~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      +++....... -+..++.|...+..........|.++++++..++.|+.+|..
T Consensus         3 ~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~   55 (97)
T cd02984           3 EEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAE   55 (97)
T ss_pred             HHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccc
Confidence            3444444433 134455677777777788889999999998778999888865

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>PTZ00051 thioredoxin; Provisional

Probab=83.58  E-value=4  Score=28.31  Aligned_cols=55  Identities=7%  Similarity=0.059  Sum_probs=39.0

Q ss_pred             eeeCc-chHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         154 VEFNH-ETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       154 ~~~~~-~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      .++++ +.+..+.+.+ +..++.|+..+......+...+.++++++.+ +.|+.+|..
T Consensus         3 ~~i~~~~~~~~~~~~~-~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~   58 (98)
T PTZ00051          3 HIVTSQAEFESTLSQN-ELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVD   58 (98)
T ss_pred             EEecCHHHHHHHHhcC-CeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECc
Confidence            44543 4566666654 3456668888877788888999999998864 778777754

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=83.33  E-value=2.9  Score=38.60  Aligned_cols=58  Identities=9%  Similarity=0.098  Sum_probs=44.4

Q ss_pred             CceeeeCcchHHHhhc--cCCcceEEEEEeCCccchhhhhHHHHHHHHhccCc-eEEEEcC
Q psy7942         151 PLVVEFNHETAQKIFG--GEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREK-EEQDEDD  208 (216)
Q Consensus       151 P~v~~~~~~~~~~~~~--~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~-~~f~~~d  208 (216)
                      +.|.++|.+|+..+..  ..-.+.++.|+.+.+..+..+...+.++|++|+++ +.|..+|
T Consensus       351 ~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVd  411 (463)
T TIGR00424       351 NNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFR  411 (463)
T ss_pred             CCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEE
Confidence            4788999999988764  22134455688888888899999999999999875 6665554

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=83.30  E-value=3.6  Score=29.29  Aligned_cols=53  Identities=6%  Similarity=0.180  Sum_probs=38.1

Q ss_pred             CcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCc-eEEEEcCCC
Q psy7942         157 NHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREK-EEQDEDDDQ  210 (216)
Q Consensus       157 ~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~-~~f~~~d~~  210 (216)
                      |.+++..+...+ ++.++.|...+.+.+......|.++++++.+. +.|..+|..
T Consensus         6 ~~~~~~~~i~~~-~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d   59 (102)
T cd02948           6 NQEEWEELLSNK-GLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD   59 (102)
T ss_pred             CHHHHHHHHccC-CeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC
Confidence            345566666554 34456688888888888999999999999864 667766543

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=83.30  E-value=3.8  Score=30.14  Aligned_cols=73  Identities=16%  Similarity=0.266  Sum_probs=47.3

Q ss_pred             eeecCHHHHHHhHhCCCeEEEEEecCC-----ChhHHHHHHHHHhhCC-CceEEecchhhHHHHhhhhccccceeeeccc
Q psy7942          31 KEFTSVDEIKAFIADSKVVVAGLFKDA-----SSELAKTFNEIASKVD-DLVFDASSELAKTFNEIASKVDDLVFVTSTN  104 (216)
Q Consensus        31 ~~l~s~~~~~~~~~~~~v~~V~f~~~~-----~~~~~~~f~~~A~~~~-~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~  104 (216)
                      ..++ .+++++|+......++.|-.|.     ..+..-..-++.+.++ ....++              ++     ...+
T Consensus        12 ~~vd-~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~av--------------v~-----~~~e   71 (107)
T PF07449_consen   12 PRVD-ADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAV--------------VA-----RAAE   71 (107)
T ss_dssp             EEE--CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEE--------------EE-----HHHH
T ss_pred             eeec-hhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEE--------------EC-----chhH
Confidence            4554 5778999998888888665543     2345557777777774 333331              00     2346


Q ss_pred             HHHHHhcCCCC-CeEEEEec
Q psy7942         105 ADILAEYSVDD-DTVAIFKK  123 (216)
Q Consensus       105 ~~v~~~~~v~~-p~i~~~~~  123 (216)
                      ..+..+|++.. |+++++|.
T Consensus        72 ~~L~~r~gv~~~PaLvf~R~   91 (107)
T PF07449_consen   72 RALAARFGVRRWPALVFFRD   91 (107)
T ss_dssp             HHHHHHHT-TSSSEEEEEET
T ss_pred             HHHHHHhCCccCCeEEEEEC
Confidence            67899999974 99999995

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=82.51  E-value=13  Score=38.07  Aligned_cols=103  Identities=12%  Similarity=0.154  Sum_probs=65.5

Q ss_pred             CCCeEEEEEecCCCh---hHHHHHHHHHhhCCC--ce-EEec----c--hhhHHHHhhhhccccc-eeeecccHHHHHhc
Q psy7942          45 DSKVVVAGLFKDASS---ELAKTFNEIASKVDD--LV-FDAS----S--ELAKTFNEIASKVDDL-VFVTSTNADILAEY  111 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~--~~-F~~~----~--~~~~~~~~~~~~~~~~-~~~~t~~~~v~~~~  111 (216)
                      ..++++|-|+++||.   ...+.+.++.+++.+  +. .+++    +  .....|.....+.+-. -.+...+..+.+.|
T Consensus       419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~  498 (1057)
T PLN02919        419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL  498 (1057)
T ss_pred             CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence            478999999999984   556788888888832  33 3432    1  1233344444443321 11233456788899


Q ss_pred             CCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         112 SVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       112 ~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ++.. |+.+++.+..+-...+.|.. ..+.|.++|...
T Consensus       499 ~V~~iPt~ilid~~G~iv~~~~G~~-~~~~l~~~l~~~  535 (1057)
T PLN02919        499 GVSSWPTFAVVSPNGKLIAQLSGEG-HRKDLDDLVEAA  535 (1057)
T ss_pred             CCCccceEEEECCCCeEEEEEeccc-CHHHHHHHHHHH
Confidence            9986 99999964333334467887 788888888764

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=82.37  E-value=3.7  Score=27.71  Aligned_cols=38  Identities=21%  Similarity=0.488  Sum_probs=26.3

Q ss_pred             ccHHHHHhcCCCC-CeEEEEecCCCCcccccC-CCCCHHHHHHHHh
Q psy7942         103 TNADILAEYSVDD-DTVAIFKKFDEGRVNYEG-PASDEAALRKFLS  146 (216)
Q Consensus       103 ~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G-~~~~~~~l~~fi~  146 (216)
                      .+..-..+|++.. |++++    | +...|.| -. +.+.|..||+
T Consensus        37 ~~~~~~~~ygv~~vPalvI----n-g~~~~~G~~p-~~~el~~~l~   76 (76)
T PF13192_consen   37 EDFEEIEKYGVMSVPALVI----N-GKVVFVGRVP-SKEELKELLE   76 (76)
T ss_dssp             TTHHHHHHTT-SSSSEEEE----T-TEEEEESS---HHHHHHHHHH
T ss_pred             cCHHHHHHcCCCCCCEEEE----C-CEEEEEecCC-CHHHHHHHhC
Confidence            3444448999976 99977    2 3688999 55 8899999874

...

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=82.35  E-value=24  Score=33.18  Aligned_cols=112  Identities=13%  Similarity=0.200  Sum_probs=70.3

Q ss_pred             ccCCCCCChHHHHHHHHh---hhCCCceeecCHHHHHHhHh-CCCeEEEEEecCCC---hhHHHHHHHHHhhCCCceEEe
Q psy7942           7 GERRGGRTAEDIVNWLLK---KTGPPAKEFTSVDEIKAFIA-DSKVVVAGLFKDAS---SELAKTFNEIASKVDDLVFDA   79 (216)
Q Consensus         7 ~~Y~G~Rta~~iv~~l~~---~~~~~v~~l~s~~~~~~~~~-~~~v~~V~f~~~~~---~~~~~~f~~~A~~~~~~~F~~   79 (216)
                      +.|.|--.-.++-.++..   ..++.. .| +.+..+.+.+ +.++-+-.|..+.|   ........++|...+++..- 
T Consensus       435 i~f~g~P~G~Ef~s~i~~i~~~~~~~~-~l-~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~-  511 (555)
T TIGR03143       435 LKFHGVPSGHELNSFILALYNAAGPGQ-PL-GEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAE-  511 (555)
T ss_pred             eEEEecCccHhHHHHHHHHHHhcCCCC-CC-CHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEE-
Confidence            456665555555555554   444543 44 4444444443 34554544555655   55566777777777666644 


Q ss_pred             cchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHH
Q psy7942          80 SSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFL  145 (216)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi  145 (216)
                                   -+|     .+..++++++|++.. |++++-    + ...+.|.. +.+.|..||
T Consensus       512 -------------~i~-----~~~~~~~~~~~~v~~vP~~~i~----~-~~~~~G~~-~~~~~~~~~  554 (555)
T TIGR03143       512 -------------MID-----VSHFPDLKDEYGIMSVPAIVVD----D-QQVYFGKK-TIEEMLELI  554 (555)
T ss_pred             -------------EEE-----CcccHHHHHhCCceecCEEEEC----C-EEEEeeCC-CHHHHHHhh
Confidence                         133     556689999999986 999983    2 35678988 889998886

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=81.23  E-value=4.1  Score=27.16  Aligned_cols=40  Identities=18%  Similarity=0.125  Sum_probs=33.4

Q ss_pred             EEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCCC
Q psy7942         173 LLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQPK  212 (216)
Q Consensus       173 lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~~  212 (216)
                      +.+|...+.+........+.++|+++.+++.+..+|....
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~   42 (82)
T TIGR00411         3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMEN   42 (82)
T ss_pred             EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccC
Confidence            5678888888889999999999999988888888887543

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>smart00594 UAS UAS domain

Probab=80.54  E-value=20  Score=26.35  Aligned_cols=96  Identities=20%  Similarity=0.194  Sum_probs=53.3

Q ss_pred             eecCHHHH-HHhHhCCCeEEEEEecCCChhHHH----HHH--HHHhhC-CCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          32 EFTSVDEI-KAFIADSKVVVAGLFKDASSELAK----TFN--EIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        32 ~l~s~~~~-~~~~~~~~v~~V~f~~~~~~~~~~----~f~--~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      .-.+-+++ +...++.+.++|++..+|+.....    .|.  ++...+ .++.+-              ++|-   -...
T Consensus        12 ~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~--------------~~dv---~~~e   74 (122)
T smart00594       12 YQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFW--------------QVDV---DTSE   74 (122)
T ss_pred             eeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEE--------------EecC---CChh
Confidence            33445444 455567889999999998743211    121  111112 233321              1110   0122


Q ss_pred             cHHHHHhcCCCC-CeEEEEecCCCC-----cccccCCCCCHHHHHHHH
Q psy7942         104 NADILAEYSVDD-DTVAIFKKFDEG-----RVNYEGPASDEAALRKFL  145 (216)
Q Consensus       104 ~~~v~~~~~v~~-p~i~~~~~~de~-----~~~y~G~~~~~~~l~~fi  145 (216)
                      ...++..|++.+ |+++++.+..+.     .....|.. +.+.|..++
T Consensus        75 g~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~-~~~~l~~~l  121 (122)
T smart00594       75 GQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEI-SPEELMTFL  121 (122)
T ss_pred             HHHHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCC-CHHHHHHhh
Confidence            345788999876 999998764321     22467888 888887765

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=80.47  E-value=7.1  Score=31.05  Aligned_cols=61  Identities=10%  Similarity=0.056  Sum_probs=43.7

Q ss_pred             CCCceeeeCc-chHHHhhccCCc--ceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         149 SLPLVVEFNH-ETAQKIFGGEIK--SHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       149 ~~P~v~~~~~-~~~~~~~~~~~~--~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      .+-.+.+++. +++........+  +.++.|+..+.+.+..+...|.++|++|. .+.|+.+|..
T Consensus        60 ~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d  123 (175)
T cd02987          60 RFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRAS  123 (175)
T ss_pred             CCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEecc
Confidence            3566778887 777666543211  33444777777777888899999999996 5889888765

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=80.15  E-value=4.6  Score=30.87  Aligned_cols=48  Identities=8%  Similarity=0.104  Sum_probs=35.3

Q ss_pred             HHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCC
Q psy7942         161 AQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDD  209 (216)
Q Consensus       161 ~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~  209 (216)
                      +......+ ++.++.|...++..+......+.+++++|.+++.|+.+|.
T Consensus        13 ~~~a~~~g-k~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~v   60 (142)
T cd02950          13 PEVALSNG-KPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNV   60 (142)
T ss_pred             HHHHHhCC-CEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEc
Confidence            34444444 3456668888888888999999999999988877776654

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	216
2k18_A	228	Solution Structure Of Bb' Domains Of Human Protein		2e-24
3uem_A	361	Crystal Structure Of Human Pdi Bb'a' Domains Length		3e-24
2bjx_A	110	Protein Disulfide Isomerase Length = 110		3e-14
4f9z_D	227	Crystal Structure Of Human Erp27 Length = 227		1e-10
3bj5_A	147	Alternative Conformations Of The X Region Of Human		5e-08
3f8u_A	481	TapasinERP57 HETERODIMER Length = 481		5e-05

>pdb|2K18|A Chain A, Solution Structure Of Bb' Domains Of Human Protein Disulfide Isomerase Length = 228

Iteration: 1
 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 87/159 (54%), Gaps = 23/159 (14%)
Query: 40  KAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVF 99
           ++ +  S+V V G FKD  S+ AK F + A  +DD+ F  +S                  
Sbjct: 18  ESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITS------------------ 59
Query: 100 VTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHE 159
               N+D+ ++Y +D D V +FKKFDEGR N+EG  + E  L  F+    LPLV+EF  +
Sbjct: 60  ----NSDVFSKYQLDKDGVVLFKKFDEGRNNFEGEVTKENLL-DFIKHNQLPLVIEFTEQ 114
Query: 160 TAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDF 198
           TA KIFGGEIK+H+L+F  K+   Y+      +T A+ F
Sbjct: 115 TAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESF 153

>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains Length = 361

Iteration: 1
 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 87/159 (54%), Gaps = 23/159 (14%)
Query: 40  KAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVF 99
           ++ +  S+V V G FKD  S+ AK F + A  +DD+ F  +S                  
Sbjct: 29  ESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITS------------------ 70
Query: 100 VTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHE 159
               N+D+ ++Y +D D V +FKKFDEGR N+EG  + E  L  F+    LPLV+EF  +
Sbjct: 71  ----NSDVFSKYQLDKDGVVLFKKFDEGRNNFEGEVTKENLL-DFIKHNQLPLVIEFTEQ 125
Query: 160 TAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDF 198
           TA KIFGGEIK+H+L+F  K+   Y+      +T A+ F
Sbjct: 126 TAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESF 164

>pdb|2BJX|A Chain A, Protein Disulfide Isomerase Length = 110

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 23/122 (18%)
Query: 40  KAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVF 99
           ++ +  S+V V G FKD  S+ AK F + A  +DD+ F  +S                  
Sbjct: 12  ESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFGITS------------------ 53
Query: 100 VTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHE 159
               N+D+ ++Y +D D V +FKKFDEGR N+EG  + E  L  F+    LPLV+EF  +
Sbjct: 54  ----NSDVFSKYQLDKDGVVLFKKFDEGRNNFEGEVTKE-NLLDFIKHNQLPLVIEFTEQ 108
Query: 160 TA 161
           TA
Sbjct: 109 TA 110

>pdb|4F9Z|D Chain D, Crystal Structure Of Human Erp27 Length = 227

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 29/179 (16%)
Query: 27  GPPAKE----FTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSE 82
           GP A +     T V     FIA ++V V G F+D          EI +            
Sbjct: 4   GPGAAQEPTWLTDVPAAMEFIAATEVAVIGFFQDL---------EIPA------------ 42
Query: 83  LAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGP---ASDEA 139
                + +  K   + F  ST++++L  Y++  +T+ +F+  D  ++N E     + D  
Sbjct: 43  -VPILHSMVQKFPGVSFGISTDSEVLTHYNITGNTICLFRLVDNEQLNLEDEDIESIDAT 101
Query: 140 ALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDF 198
            L +F+   SL +V E+N  T   +F   I+ HLL+  +KA+  YE +    Q  AK F
Sbjct: 102 KLSRFIEINSLHMVTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAKLF 160

>pdb|3BJ5|A Chain A, Alternative Conformations Of The X Region Of Human Protein Disulphide- Isomerase Modulate Exposure Of The Substrate Binding B' Domain Length = 147

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 149 SLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDF 198
            LPLV+EF  +TA KIFGGEIK+H+L+F  K+   Y+      +T A+ F
Sbjct: 12  QLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESF 61

>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER Length = 481

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 7   GERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFN 66
           G   G RTA+ IV+ L K+ GP +    + +E K FI+D    + G F D+ SE    F 
Sbjct: 89  GAYDGPRTADGIVSHLKKQAGPASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFL 148
Query: 67  EIASKVDDLVFDASSELAKTFNEIASKVDDLVF-----VTSTNADILAEYSVDDDTVAIF 121
           + AS + D    A + +    NE     + ++      +T+   D    Y+    T    
Sbjct: 149 KAASNLRDNYRFAHTNVESLVNEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKI 208
Query: 122 KKF 124
           KKF
Sbjct: 209 KKF 211

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	216
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	2e-36
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	1e-33
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	1e-32
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	5e-30
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	3e-26
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	2e-24
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	3e-24
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	1e-20
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	2e-19
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	5e-15
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	6e-04
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	1e-13
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	5e-11
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-07
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	3e-10
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	9e-05
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	1e-04
1mek_A	120	Protein disulfide isomerase; electron transport, r	2e-04

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score =  129 bits (326), Expect = 2e-36
 Identities = 61/189 (32%), Positives = 92/189 (48%), Gaps = 23/189 (12%)

Query: 13  RTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKV 72
             +  +           A         ++ +  S+V V G FK                 
Sbjct: 2   HHSSGLEVLFQGPGSEFATTLPDGAAAESLVESSEVAVIGFFK----------------- 44

Query: 73  DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYE 132
                D  S+ AK F + A  +DD+ F  ++N+D+ ++Y +D D V +FKKFDEGR N+E
Sbjct: 45  -----DVESDSAKQFLQAAEAIDDIPFGITSNSDVFSKYQLDKDGVVLFKKFDEGRNNFE 99

Query: 133 GPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQ 192
           G  + E  L  F+    LPLV+EF  +TA KIFGGEIK+H+L+F  K+   Y+      +
Sbjct: 100 GEVTKE-NLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFK 158

Query: 193 TVAKDFREK 201
           T A+ F+ K
Sbjct: 159 TAAESFKGK 167

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350

 Score =  122 bits (306), Expect = 1e-33
 Identities = 35/200 (17%), Positives = 71/200 (35%), Gaps = 23/200 (11%)

Query: 6   PGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADS-KVVVAGLFKDASSELAKT 64
             E  G   A+ +V +LL     P +   S  E++AF     ++ + G FK   SE  K 
Sbjct: 101 TIEFDGEFAADVLVEFLLDLIEDPVEIINSKLEVQAFERIEDQIKLIGFFKSEESEYYKA 160

Query: 65  FNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKF 124
           F E A                           + F  + +  +  + S+  + V  ++ F
Sbjct: 161 FEEAAEHFQP---------------------YIKFFATFDKGVAKKLSLKMNEVDFYEPF 199

Query: 125 DEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKS-HLLVFFSKAAGH 183
            +  +        E  L +F+     P +     E   + +  ++   H++ F  ++   
Sbjct: 200 MDEPIAIPDKPYTEEELVEFVKEHQRPTLRRLRPEDMFETWEDDLNGIHIVAFAERSDPD 259

Query: 184 YESHFEPVQTVAKDFREKEE 203
                E ++ VA+D  +  +
Sbjct: 260 GYEFLEILKQVARDNTDNPD 279

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score =  120 bits (301), Expect = 1e-32
 Identities = 33/198 (16%), Positives = 74/198 (37%), Gaps = 23/198 (11%)

Query: 6   PGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSK-VVVAGLFKDASSELAKT 64
             E  G  +A+ +V +LL     P +      E++AF      + + G FK+  SE  K 
Sbjct: 103 VIEYDGEFSADTLVEFLLDVLEDPVELIEGERELQAFENIEDEIKLIGYFKNKDSEHYKA 162

Query: 65  FNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKF 124
           F E A +                         + F  + ++ +  + ++  + +  ++ F
Sbjct: 163 FKEAAEEFHP---------------------YIPFFATFDSKVAKKLTLKLNEIDFYEAF 201

Query: 125 DEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKS-HLLVFFSKAAGH 183
            E  V      + E  +  F+       + +   E+  + +  ++   H++ F  +A   
Sbjct: 202 MEEPVTIPDKPNSEEEIVNFVEEHRRSTLRKLKPESMYETWEDDMDGIHIVAFAEEADPD 261

Query: 184 YESHFEPVQTVAKDFREK 201
                E +++VA+D  + 
Sbjct: 262 GYEFLEILKSVAQDNTDN 279

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382

 Score =  113 bits (283), Expect = 5e-30
 Identities = 25/195 (12%), Positives = 59/195 (30%), Gaps = 24/195 (12%)

Query: 6   PGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTF 65
             E RG R+ + + +++ ++   P +E   + EI       + ++               
Sbjct: 96  KREYRGQRSVKALADYIRQQKSDPIQEIRDLAEITTLDRSKRNIIG-------------- 141

Query: 66  NEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKK-F 124
                          S+  + F  +A+ + D     S   D+        D +       
Sbjct: 142 ---------YFEQKDSDNYRVFERVANILHDDCAFLSAFGDVSKPERYSGDNIIYKPPGH 192

Query: 125 DEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHY 184
               + Y G  ++      ++  + +PLV E   E  +++    +   +L    +     
Sbjct: 193 SAPDMVYLGAMTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFHMKEDTESL 252

Query: 185 ESHFEPVQTVAKDFR 199
           E     V       +
Sbjct: 253 EIFQNEVARQLISEK 267

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens} Length = 252

 Score =  100 bits (250), Expect = 3e-26
 Identities = 35/182 (19%), Positives = 65/182 (35%), Gaps = 28/182 (15%)

Query: 26  TGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAK 85
             P +    + +E K FI+D    + G F D+ SE    F + AS +             
Sbjct: 4   GSPASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNL------------- 50

Query: 86  TFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFK------KFDEGRVNYEGPASDEA 139
                    D+  F  +    ++ EY  + + + +F+      KF++  V Y        
Sbjct: 51  --------RDNYRFAHTNVESLVNEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSG 102

Query: 140 ALRKFLSTQSLPLVVEFNHETAQKIFGGEIK-SHLLVFFSKAAGHYESHFEPVQTVAKDF 198
            ++KF+      +      +    I G ++  ++  V + K A         V  VAK F
Sbjct: 103 KIKKFIQENIFGICPHMTEDNKDLIQGKDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKF 162

Query: 199 RE 200
            +
Sbjct: 163 LD 164

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens} Length = 124

 Score = 92.3 bits (229), Expect = 2e-24
 Identities = 28/144 (19%), Positives = 51/144 (35%), Gaps = 29/144 (20%)

Query: 14  TAEDIVNWLLKKTGPPAKE----FTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIA 69
                +       GP A +     T V     FIA ++V V G F+D         + + 
Sbjct: 3   HHHHHMEVEKSSDGPGAAQEPTWLTDVPAAMEFIAATEVAVIGFFQDLEIPAVPILHSMV 62

Query: 70  SKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRV 129
            K   + F  S+                      ++++L  Y++  +T+ +F+  D  ++
Sbjct: 63  QKFPGVSFGIST----------------------DSEVLTHYNITGNTICLFRLVDNEQL 100

Query: 130 NYEGPAS---DEAALRKFLSTQSL 150
           N E       D   L +F+   SL
Sbjct: 101 NLEDEDIESIDATKLSRFIEINSL 124

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 98.8 bits (245), Expect = 3e-24
 Identities = 45/207 (21%), Positives = 79/207 (38%), Gaps = 28/207 (13%)

Query: 6   PGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTF 65
            G   G RTA+ IV+ L K+ GP +    + +E K FI+D    + G F D+ SE    F
Sbjct: 88  AGAYDGPRTADGIVSHLKKQAGPASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEF 147

Query: 66  NEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFK--- 122
            + AS +                      D+  F  +    ++ EY  + + + +F+   
Sbjct: 148 LKAASNLR---------------------DNYRFAHTNVESLVNEYDDNGEGIILFRPSH 186

Query: 123 ---KFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIK-SHLLVFFS 178
              KF++  V Y         ++KF+      +      +    I G ++  ++  V + 
Sbjct: 187 LTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQGKDLLIAYYDVDYE 246

Query: 179 KAAGHYESHFEPVQTVAKDFREKEEQD 205
           K A         V  VAK F +   + 
Sbjct: 247 KNAKGSNYWRNRVMMVAKKFLDAGHKL 273

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus} Length = 250

 Score = 85.6 bits (211), Expect = 1e-20
 Identities = 31/186 (16%), Positives = 67/186 (36%), Gaps = 32/186 (17%)

Query: 26  TGPPAKEFTSVDEIKAFIADS-KVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELA 84
             PP+KE  ++ +++ F+ D   VV+ G+F+         + + A+ +            
Sbjct: 4   GSPPSKEILTLKQVQEFLKDGDDVVILGVFQGVGDPGYLQYQDAANTL------------ 51

Query: 85  KTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFK------KFDEGRVNYEGPAS-D 137
                     +D  F  + + +I     V    + + +      K++      +   S +
Sbjct: 52  ---------REDYKFHHTFSTEIAKFLKVSLGKLVLMQPEKFQSKYEPRMHVMDVQGSTE 102

Query: 138 EAALRKFLSTQSLPLVVEFNHETAQKIFGGE---IKSHLLVFFSKAAGHYESHFEPVQTV 194
            +A++ ++   +LPLV         K +      +  + + F        +     V  V
Sbjct: 103 ASAIKDYVVKHALPLVGHRKTSNDAKRYSKRPLVVVYYSVDFSFDYRTATQFWRNKVLEV 162

Query: 195 AKDFRE 200
           AKDF E
Sbjct: 163 AKDFPE 168

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Length = 298

 Score = 83.6 bits (206), Expect = 2e-19
 Identities = 27/169 (15%), Positives = 58/169 (34%), Gaps = 6/169 (3%)

Query: 10  RGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIA 69
            G RT   IV++ L +     K+F  +D + + +  S  +   LF     +++  +  IA
Sbjct: 125 SGARTLAPIVDFSLSRIRSYVKKFVRIDTLGSLLRKSPKLSVVLFSK-QDKISPVYKSIA 183

Query: 70  SKVDDLV---FDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDE 126
                       ++ +L +  +   +              I  +   D   + +F    +
Sbjct: 184 LDWLGKFDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKLVVFDADKD 243

Query: 127 GRVNYEGPASDEAALRKFLSTQS--LPLVVEFNHETAQKIFGGEIKSHL 173
               YEG + ++  + KFL       P    F+  +    +    K  +
Sbjct: 244 KFWEYEGNSINKNDISKFLRDTFSITPNEGPFSRRSEYIAYLKTGKKPI 292

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score = 72.2 bits (176), Expect = 5e-15
 Identities = 37/198 (18%), Positives = 65/198 (32%), Gaps = 31/198 (15%)

Query: 6   PGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTF 65
             +  G RTAE IV +++K++ P       +    A       V+        ++   TF
Sbjct: 101 SIDYEGPRTAEAIVQFMIKQSQPAVAVVADLPAYLANETFVTPVIVQ-SGKIDADFNATF 159

Query: 66  NEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFD 125
             +A+K                       +D  FV++ NAD   + S+      +    D
Sbjct: 160 YSMANKH---------------------FNDYDFVSAENADDDFKLSIY-----LPSAMD 193

Query: 126 EGRV--NYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGH 183
           E  V    +   +D     K+L  ++LP   E +     +     +   L   F      
Sbjct: 194 EPVVYNGKKADIADADVFEKWLQVEALPYFGEIDGSVFAQYVESGL--PLGYLFYNDEEE 251

Query: 184 YESHFEPVQTVAKDFREK 201
            E +      +AK  R  
Sbjct: 252 LEEYKPLFTELAKKNRGL 269

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score = 39.1 bits (90), Expect = 6e-04
 Identities = 6/55 (10%), Positives = 19/55 (34%)

Query: 6   PGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSE 60
               +G R+ + + +++ +            +E +   A+     A L  +  + 
Sbjct: 446 SVVYQGSRSLDSLFDFIKENGHFDVDGKALYEEAQEKAAEEADADAELADEEDAI 500

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens} Length = 147

 Score = 65.1 bits (158), Expect = 1e-13
 Identities = 25/61 (40%), Positives = 36/61 (59%)

Query: 141 LRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFRE 200
               +    LPLV+EF  +TA KIFGGEIK+H+L+F  K+   Y+      +T A+ F+ 
Sbjct: 4   HHHHMKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKG 63

Query: 201 K 201
           K
Sbjct: 64  K 64

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 60.5 bits (146), Expect = 5e-11
 Identities = 26/201 (12%), Positives = 53/201 (26%), Gaps = 23/201 (11%)

Query: 6   PGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTF 65
             +  G R+ E +V + ++       E ++       I  +     G      S+     
Sbjct: 200 AVKYNGDRSKESLVAFAMQHVRSTVTELST-GNFVNAIETAFAAGVGWLITFCSKGEDCL 258

Query: 66  NEIASKVDDLVFDASSELAKTFNEIASKVDDLVFV----TSTNADILAEYSVDDDTVAIF 121
                              +T   ++  +D LV V          +         T A F
Sbjct: 259 TS-----------------QTRLRLSGMLDGLVNVGWVDCDAQDSLCKSLDTTASTTAYF 301

Query: 122 KKFDEGRVNYEGPASDEAALR-KFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKA 180
                     +       +L  K +  + +  + +F   +A ++         LVFF   
Sbjct: 302 PPGATLNDREKSSVLFLNSLDAKEIYMEIIHNLPDFELLSANQLEDRLAHHRWLVFFHFG 361

Query: 181 AGHYESHFEPVQTVAKDFREK 201
                +  E  +       E 
Sbjct: 362 KNENANDPELKKLKTLLKNEH 382

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 50.1 bits (119), Expect = 2e-07
 Identities = 25/206 (12%), Positives = 62/206 (30%), Gaps = 29/206 (14%)

Query: 6   PGERRGGRTAEDIVNWLLKKTGPPAKEFT--SVDEIKAFIADSKVVVAGLFKDASSELAK 63
             E  G  +AE I+ ++     P     T  + +E+       +V +   +   S     
Sbjct: 521 IHEYEGHHSAEQILEFIEDLRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQV 580

Query: 64  TFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNAD----ILAEYSVDD-DTV 118
                              L   +  +A  +  L+ V S +         + +V     +
Sbjct: 581 -------------------LMPEWKRMARTLTGLINVGSVDCGQYHSFCTQENVQRYPEI 621

Query: 119 AIFKKFDEGRVNYEGPAS---DEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLV 175
             + +       Y        D  +LR +         ++   +T  +         ++ 
Sbjct: 622 RFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLPQASIDLTPQTFNEKVLQGKTHWVVD 681

Query: 176 FFSKAAGHYESHFEPVQTVAKDFREK 201
           F++  +G  ++     + +A+  + K
Sbjct: 682 FYAPWSGPSQNFAPEFELLARMIKGK 707

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 57.2 bits (138), Expect = 3e-10
 Identities = 24/158 (15%), Positives = 53/158 (33%), Gaps = 28/158 (17%)

Query: 6   PGERRGGRTAEDIVNWLLKKTGPPAKEFTSV------DEIKAFIADSKVVVAGLFKDAS- 58
             +  G RT E+IV  + + + P       V      +     + D+ +++   +     
Sbjct: 101 AVDYEGSRTQEEIVAKVREVSQPDWTPPPEVTLVLTKENFDEVVNDADIILVEFYAPWCG 160

Query: 59  --SELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDD 116
              +LA  +                + AK  ++ +  +       +   D+   + V   
Sbjct: 161 HCKKLAPEYE---------------KAAKELSKRSPPIPLAKVDATAETDLAKRFDV--S 203

Query: 117 TVAIFKKFDEGR-VNYEGPASDEAALRKFLSTQSLPLV 153
                K F +GR  +Y GP  ++  +  ++  QS    
Sbjct: 204 GYPTLKIFRKGRPYDYNGP-REKYGIVDYMIEQSGAAA 240

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A Length = 133

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 149 SLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREK 201
             PL+ E   ET        I   L   F++ A   +   + ++ +A+  R  
Sbjct: 4   GSPLIGEIGPETYSDYMSAGIP--LAYIFAETAEERKELSDKLKPIAEAQRGV 54

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 6e-05
 Identities = 28/167 (16%), Positives = 52/167 (31%), Gaps = 30/167 (17%)

Query: 56  DASSELAKTFNEIASKVDD-----------LVFD--ASSELAKTFNEIASKVDDLVFVTS 102
           D SS +    + I +++             LV     +++    FN ++ K+     +T+
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-LSCKI----LLTT 272

Query: 103 TNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFL--STQSLPLVVEFNHET 160
               +    S    T              E     ++ L K+L    Q LP  V   +  
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEV----KSLLLKYLDCRPQDLPREVLTTNPR 328

Query: 161 AQKIFGGEIKSHLLVF-FSKAAGHYESHFEPVQTVAKDFREKEEQDE 206
              I    I+  L  +   K   H     + + T+ +      E  E
Sbjct: 329 RLSIIAESIRDGLATWDNWK---HVN--CDKLTTIIESSLNVLEPAE 370

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 140

 Score = 40.1 bits (94), Expect = 9e-05
 Identities = 8/31 (25%), Positives = 13/31 (41%)

Query: 11  GGRTAEDIVNWLLKKTGPPAKEFTSVDEIKA 41
           G RT E+IV  + + + P       V    +
Sbjct: 108 GSRTQEEIVAKVREVSQPDWTPPPEVTSGPS 138

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 7/32 (21%), Positives = 15/32 (46%)

Query: 10  RGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKA 41
           +G RT +D +N++  K     +  +S     +
Sbjct: 93  QGPRTKKDFINFISDKEWKSIEPVSSWFSGPS 124

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 Length = 120

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 16/25 (64%), Positives = 18/25 (72%)

Query: 6   PGERRGGRTAEDIVNWLLKKTGPPA 30
           P E   GR A+DIVNWL K+TGP A
Sbjct: 96  PKEYTAGREADDIVNWLKKRTGPAA 120

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	216
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.97
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.95
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	99.95
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	99.94
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	99.93
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.93
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.91
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.87
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.83
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	99.8
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.72
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.7
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.59
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.57
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.44
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.42
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.4
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.39
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.36
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.35
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.32
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.25
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.15
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.04
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.02
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	98.92
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	98.84
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	98.83
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	98.82
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	98.74
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	98.73
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	98.72
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	98.7
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	98.7
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	98.69
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	98.69
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	98.69
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	98.68
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	98.67
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	98.65
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	98.64
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	98.62
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	98.61
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	98.61
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	98.61
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	98.59
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	98.59
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	98.58
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	98.58
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	98.58
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	98.57
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	98.56
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	98.56
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	98.56
1mek_A	120	Protein disulfide isomerase; electron transport, r	98.55
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	98.55
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	98.55
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	98.55
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	98.53
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	98.53
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	98.53
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	98.52
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	98.52
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	98.51
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	98.51
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	98.51
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	98.51
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	98.5
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	98.5
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	98.5
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	98.5
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	98.5
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	98.5
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	98.5
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	98.49
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	98.48
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	98.47
2qsi_A	137	Putative hydrogenase expression/formation protein;	98.46
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	98.46
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	98.45
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	98.44
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	98.44
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	98.42
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	98.41
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	98.39
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	98.37
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	98.36
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	98.35
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	98.34
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	98.33
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	98.33
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	98.31
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	98.29
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	98.29
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	98.29
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	98.27
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	98.27
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.27
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	98.25
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	98.25
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	98.24
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	98.21
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	98.19
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	98.19
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	98.17
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	98.16
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	98.15
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	98.12
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	98.11
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	98.11
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	98.1
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	98.07
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	98.06
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	98.05
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	98.04
2l57_A	126	Uncharacterized protein; structural genomics, unkn	97.99
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	97.97
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	97.97
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	97.14
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	97.89
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	97.88
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	97.77
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	97.68
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	97.63
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	97.61
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	97.54
2kuc_A	130	Putative disulphide-isomerase; structural genomics	97.5
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	97.08
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	97.03
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	96.88
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	96.84
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	96.83
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	95.73
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	96.7
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	96.68
3raz_A	151	Thioredoxin-related protein; structural genomics,	96.64
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	96.56
4evm_A	138	Thioredoxin family protein; structural genomics, n	96.55
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	96.5
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	96.37
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	96.31
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	96.17
3ira_A	173	Conserved protein; methanosarcina mazei,structural	96.13
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	96.09
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	96.02
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	95.92
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	95.91
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	95.9
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	95.88
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	95.83
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	95.66
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	95.6
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	95.49
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	95.45
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	95.39
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	95.32
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	95.31
1ttz_A	87	Conserved hypothetical protein; structural genomic	95.13
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	95.13
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	95.11
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	95.05
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	95.02
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	94.91
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	94.9
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	94.89
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	94.88
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	94.85
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	94.81
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	94.77
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	94.76
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	94.76
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	94.71
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	94.66
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	94.56
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	94.38
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	94.36
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	94.34
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	94.27
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	94.22
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	94.22
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	94.09
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	94.08
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	94.05
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	94.01
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	93.94
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	93.92
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	93.91
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	93.9
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	93.87
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	93.86
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	93.71
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	93.51
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	93.43
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	93.42
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	93.22
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	93.13
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	93.01
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	92.96
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	92.94
1mek_A	120	Protein disulfide isomerase; electron transport, r	92.9
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	92.86
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	92.81
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	92.68
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	92.65
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	92.62
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	92.6
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	92.35
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	92.34
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	92.31
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	92.29
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	92.03
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	91.9
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	91.86
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	91.85
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	91.62
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	91.52
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	91.34
2qsi_A	137	Putative hydrogenase expression/formation protein;	91.16
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	91.12
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	90.92
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	90.9
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	90.71
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	90.65
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	90.62
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	90.54
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	90.53
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	90.44
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	90.43
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	90.4
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	90.21
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	90.14
2lrt_A	152	Uncharacterized protein; structural genomics, thio	90.0
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	89.91
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	89.63
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	89.29
2l57_A	126	Uncharacterized protein; structural genomics, unkn	89.12
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	89.05
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	88.98
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	88.96
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	88.95
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	88.59
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	88.91
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	88.81
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	88.61
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	88.42
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	87.76
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	87.44
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	87.23
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	87.14
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	86.56
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	86.38
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	86.02
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	85.81
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	85.52
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	85.1
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	84.49
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	84.43
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	84.19
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	84.16
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	84.14
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	83.34
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	82.44
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	81.92
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	81.83
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	81.68
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	81.43
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	81.29
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	80.99
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	80.09

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.97  E-value=1.6e-29  Score=222.51  Aligned_cols=186  Identities=18%  Similarity=0.268  Sum_probs=170.2

Q ss_pred             CCCcccCCCCCChHHHHHHHHhhhCCCceeecCHHHHHHhHh-CCCeEEEEEecCCChhHHHHHHHHHhhC-CCceEEec
Q psy7942           3 SCLPGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIA-DSKVVVAGLFKDASSELAKTFNEIASKV-DDLVFDAS   80 (216)
Q Consensus         3 ~g~~~~Y~G~Rta~~iv~~l~~~~~~~v~~l~s~~~~~~~~~-~~~v~~V~f~~~~~~~~~~~f~~~A~~~-~~~~F~~~   80 (216)
                      +|.+.+|.|+|++++|++|+.++++|++..+++.++++++++ ++++++|+||.+++++.++.|.++|..+ +++.|+  
T Consensus       100 ~G~~~~y~G~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~vv~ff~~~~~~~~~~f~~~A~~~~~~~~F~--  177 (367)
T 3us3_A          100 EDEVIEYDGEFSADTLVEFLLDVLEDPVELIEGERELQAFENIEDEIKLIGYFKNKDSEHYKAFKEAAEEFHPYIPFF--  177 (367)
T ss_dssp             TTEEEECCSCCSHHHHHHHHHHHHSCSEEECCSHHHHHHHHHCCSSCEEEEECSCTTCHHHHHHHHHHHHHTTTSCEE--
T ss_pred             CCcEEEeCCCCCHHHHHHHHHHhcCCCcEEcCCHHHHHHHhccCCCcEEEEEECCCCchHHHHHHHHHHhhcCCcEEE--
Confidence            688889999999999999999999999999999999999999 7899999999999999999999999998 789999  


Q ss_pred             chhhHHHHhhhhccccceeeecccHHHHHhcCCCCCeEEEEecCCCCcccccCC-CCCHHHHHHHHhhcCCCceeeeCcc
Q psy7942          81 SELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGP-ASDEAALRKFLSTQSLPLVVEFNHE  159 (216)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~p~i~~~~~~de~~~~y~G~-~~~~~~l~~fi~~~~~P~v~~~~~~  159 (216)
                                          .+.+++++++|+++.|+|++|+++++.+..|+|. + +.++|.+||..+++|+|+++|.+
T Consensus       178 --------------------~~~~~~~~~~~~v~~p~i~lf~~~~~~~~~y~g~~~-~~~~l~~fi~~~~~p~v~elt~~  236 (367)
T 3us3_A          178 --------------------ATFDSKVAKKLTLKLNEIDFYEAFMEEPVTIPDKPN-SEEEIVNFVEEHRRSTLRKLKPE  236 (367)
T ss_dssp             --------------------EECCHHHHHHHTCCTTCEEEECTTCSSCEECSSSSC-CHHHHHHHHHHTCSCSEEECCGG
T ss_pred             --------------------EECCHHHHHHcCCCCCeEEEEcCCCCCCeecCCCCC-CHHHHHHHHHHcCccceeecChh
Confidence                                8889999999999999999999988888999996 7 99999999999999999999999


Q ss_pred             hHHHhhccCCc-ceEEEEEeCCccchhhhhHHHHHHHHhccC--ceEEEEcCCCC
Q psy7942         160 TAQKIFGGEIK-SHLLVFFSKAAGHYESHFEPVQTVAKDFRE--KEEQDEDDDQP  211 (216)
Q Consensus       160 ~~~~~~~~~~~-~~lllf~~~~~~~~~~~~~~l~~vA~~~r~--~~~f~~~d~~~  211 (216)
                      ++..++.+.+. +++++|++.+.+++.++++.|+++|++|++  +++|+|+|...
T Consensus       237 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~vA~~~~~~~ki~F~~id~~~  291 (367)
T 3us3_A          237 SMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDD  291 (367)
T ss_dssp             GHHHHHHSCBTTEEEEEECCTTSHHHHHHHHHHHHHHHHTTTCTTCCEEEECGGG
T ss_pred             hHHHHHhhccCCcEEEEEEcCCChhHHHHHHHHHHHHHHcCCCCceEEEEECCcc
Confidence            99888876433 567778876666678999999999999999  79999999754

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.95  E-value=2.7e-27  Score=206.46  Aligned_cols=185  Identities=19%  Similarity=0.269  Sum_probs=167.6

Q ss_pred             CCCcccCCCCCChHHHHHHHHhhhCCCceeecCHHHHHHhHh-CCCeEEEEEecCCChhHHHHHHHHHhhC-CCceEEec
Q psy7942           3 SCLPGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIA-DSKVVVAGLFKDASSELAKTFNEIASKV-DDLVFDAS   80 (216)
Q Consensus         3 ~g~~~~Y~G~Rta~~iv~~l~~~~~~~v~~l~s~~~~~~~~~-~~~v~~V~f~~~~~~~~~~~f~~~A~~~-~~~~F~~~   80 (216)
                      +|.+..|.|+|++++|++|+.++++|++..|++.++++++++ ++++++|+||++++++.++.|.++|..+ +++.|+  
T Consensus        98 ~g~~~~~~G~~~~~~l~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~vv~ff~~~~~~~~~~~~~~A~~~~~~~~f~--  175 (350)
T 1sji_A           98 GDRTIEFDGEFAADVLVEFLLDLIEDPVEIINSKLEVQAFERIEDQIKLIGFFKSEESEYYKAFEEAAEHFQPYIKFF--  175 (350)
T ss_dssp             TTEEEEECSCCCHHHHHHHHHTTSSCSEEECCSHHHHHHHHHCCSSCEEEEECSCTTSHHHHHHHHHHHHTTTTSEEE--
T ss_pred             CCcEEEecCCCCHHHHHHHHHHhcCCcceeccchHHHHHHhccCCCcEEEEEECCCCcHHHHHHHHHHHhhccCcEEE--
Confidence            677889999999999999999999999999999999999998 8889999999998999999999999998 899999  


Q ss_pred             chhhHHHHhhhhccccceeeecccHHHHHhcCCCCCeEEEEecCCCCcccccCC-CCCHHHHHHHHhhcCCCceeeeCcc
Q psy7942          81 SELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGP-ASDEAALRKFLSTQSLPLVVEFNHE  159 (216)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~p~i~~~~~~de~~~~y~G~-~~~~~~l~~fi~~~~~P~v~~~~~~  159 (216)
                                          .+.+++++++++++.|+|++|+++++.+..|+|+ + +.++|.+||..++.|+++++|.+
T Consensus       176 --------------------~~~~~~~~~~~~v~~p~i~~~~~~~~~~~~y~g~~~-~~~~l~~fi~~~~~p~v~elt~~  234 (350)
T 1sji_A          176 --------------------ATFDKGVAKKLSLKMNEVDFYEPFMDEPIAIPDKPY-TEEELVEFVKEHQRPTLRRLRPE  234 (350)
T ss_dssp             --------------------EECCHHHHHHHTCCTTCEEEECTTCSSCEECSSSSC-CHHHHHHHHHHHCCCSEEECCTT
T ss_pred             --------------------EECCHHHHHHcCCCCCcEEEEeCCCCCceecCCCCC-CHHHHHHHHHHcCccchhhcChh
Confidence                                8888999999999999999999987888999998 7 99999999999999999999999


Q ss_pred             hHHHhhccCC-cceEEEEEeCCccchhhhhHHHHHHHHhccC--ceEEEEcCCC
Q psy7942         160 TAQKIFGGEI-KSHLLVFFSKAAGHYESHFEPVQTVAKDFRE--KEEQDEDDDQ  210 (216)
Q Consensus       160 ~~~~~~~~~~-~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~--~~~f~~~d~~  210 (216)
                      ++..+++.+. +.++++|.+.+..+...+++.++++|++|++  ++.|+|+|..
T Consensus       235 ~~~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vA~~~~~~~~~~f~~id~~  288 (350)
T 1sji_A          235 DMFETWEDDLNGIHIVAFAERSDPDGYEFLEILKQVARDNTDNPDLSIVWIDPD  288 (350)
T ss_dssp             THHHHHHSCSSSEEEEEECCTTSHHHHHHHHHHHHHHHHGGGCSSCCEEEECGG
T ss_pred             hHHHHhcCCCCCcEEEEEEcCCCccHHHHHHHHHHHHHHhCCCCceEEEEECch
Confidence            9999998765 4556667665544467899999999999997  8999999965

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=99.95  E-value=2.6e-27  Score=195.23  Aligned_cols=159  Identities=28%  Similarity=0.450  Sum_probs=146.6

Q ss_pred             CceeecCHHHHHHhHhCCCeEEEEEecCCChhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecccHHHH
Q psy7942          29 PAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADIL  108 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~  108 (216)
                      .+..|++.+++++|++++++++||||++++++++++|.++|..++++.|+                      +|.+++++
T Consensus        10 ~~~~l~s~~~~~~~l~~~~v~vVgff~~~~~~~~~~f~~~A~~l~~~~F~----------------------~t~~~~v~   67 (227)
T 4f9z_D           10 EPTWLTDVPAAMEFIAATEVAVIGFFQDLEIPAVPILHSMVQKFPGVSFG----------------------ISTDSEVL   67 (227)
T ss_dssp             CCEECCSHHHHHHHHHTSSEEEEEECSCSCSTHHHHHHHHTTTCTTSEEE----------------------EECCHHHH
T ss_pred             CCeeeCCHHHHHHHHhcCCeEEEEEecCCCchhHHHHHHHHHhCCCceEE----------------------EECCHHHH
Confidence            45789999999999999999999999999999999999999999999999                      89999999


Q ss_pred             HhcCCCCCeEEEEecCCCCcccccC----CCCCHHHHHHHHhhcCCCceeeeCcchHHHhhccCCcceEEEEEeCCccch
Q psy7942         109 AEYSVDDDTVAIFKKFDEGRVNYEG----PASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHY  184 (216)
Q Consensus       109 ~~~~v~~p~i~~~~~~de~~~~y~G----~~~~~~~l~~fi~~~~~P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~  184 (216)
                      +++++++|+|++||++++.+..|+|    ++ +.++|.+||+.+++|+|+++|.+|+..+++.+++.++++|.+.+.+++
T Consensus        68 ~~~~v~~p~i~lfk~~~~~~~~~~~~~~g~~-~~~~l~~fi~~~~~plv~e~t~~n~~~~~~~~~~~~~l~f~~~~~~~~  146 (227)
T 4f9z_D           68 THYNITGNTICLFRLVDNEQLNLEDEDIESI-DATKLSRFIEINSLHMVTEYNPVTVIGLFNSVIQIHLLLIMNKASPEY  146 (227)
T ss_dssp             HHTTCCSSEEEEEETTTTEEEEECHHHHHTC-CHHHHHHHHHHHCCCSEEECCHHHHHHHHHSSCCEEEEEEECTTSTTH
T ss_pred             HHcCCCCCeEEEEEecCcccccccccccCCC-CHHHHHHHHHHhCCCceeecCcccHHHHhccCCceEEEEEEcCCcchH
Confidence            9999999999999998877788985    78 999999999999999999999999999999887766666777766778


Q ss_pred             hhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         185 ESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       185 ~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      .++++.++++|++||++++|+|+|..
T Consensus       147 ~~~~~~~~~vAk~~k~~i~F~~vd~~  172 (227)
T 4f9z_D          147 EENMHRYQKAAKLFQGKILFILVDSG  172 (227)
T ss_dssp             HHHHHHHHHHHHHTTTTCEEEEEETT
T ss_pred             HHHHHHHHHHHHHhhCCEEEEEeCCc
Confidence            89999999999999999999999974

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=99.94  E-value=3.7e-26  Score=191.05  Aligned_cols=161  Identities=19%  Similarity=0.357  Sum_probs=141.3

Q ss_pred             hhCCCceeecCHHHHHHhHhC-CCeEEEEEecCCChhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeec
Q psy7942          25 KTGPPAKEFTSVDEIKAFIAD-SKVVVAGLFKDASSELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTS  102 (216)
Q Consensus        25 ~~~~~v~~l~s~~~~~~~~~~-~~v~~V~f~~~~~~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t  102 (216)
                      ++||+|+.|++.+++++|+++ +++++||||++++++.+++|.++|..+ +++.|+                      +|
T Consensus         3 ~~gP~v~~l~s~~~~~~~~~~~~~v~vVgff~~~~~~~~~~F~~~A~~lr~~~~F~----------------------~t   60 (250)
T 3ec3_A            3 LGSPPSKEILTLKQVQEFLKDGDDVVILGVFQGVGDPGYLQYQDAANTLREDYKFH----------------------HT   60 (250)
T ss_dssp             --CCSSEECCCHHHHHHHHHHCSSCEEEEECSCTTCHHHHHHHHHHHHHTTTCCEE----------------------EE
T ss_pred             CCCCCceecCCHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHHHHHHhhhcCcEEE----------------------EE
Confidence            679999999999999999998 999999999999999999999999998 899999                      99


Q ss_pred             ccHHHHHhcCCCCCeEEEEec------CCCCcccccC--CCCCHHHHHHHHhhcCCCceeeeCcchHHHhhccCCcceEE
Q psy7942         103 TNADILAEYSVDDDTVAIFKK------FDEGRVNYEG--PASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLL  174 (216)
Q Consensus       103 ~~~~v~~~~~v~~p~i~~~~~------~de~~~~y~G--~~~~~~~l~~fi~~~~~P~v~~~~~~~~~~~~~~~~~~~ll  174 (216)
                      .+++++++++++.|+|++||+      +++....|+|  ++ +.++|.+||..+++|+|+++|.+|+..++. + .+.++
T Consensus        61 ~~~~v~~~~~v~~p~ivlfk~~~~~~kfde~~~~y~g~~~~-~~~~l~~fi~~~~~Plv~e~t~~n~~~~~~-~-~~l~~  137 (250)
T 3ec3_A           61 FSTEIAKFLKVSLGKLVLMQPEKFQSKYEPRMHVMDVQGST-EASAIKDYVVKHALPLVGHRKTSNDAKRYS-K-RPLVV  137 (250)
T ss_dssp             CCHHHHHHHTCCSSEEEEECCGGGCCTTSCSCEEEECCTTS-CHHHHHHHHHHHSSCTEEEECTTTHHHHSC-S-SSEEE
T ss_pred             CcHHHHHHcCCCCCeEEEEecchhhccccccceeccCCCCC-CHHHHHHHHHHcCCCceeecCccchhhhhc-c-CccEE
Confidence            999999999999999999995      5777899994  78 999999999999999999999999999885 4 34455


Q ss_pred             EEEeCC-----ccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         175 VFFSKA-----AGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       175 lf~~~~-----~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      +|+..+     .+.++.+++.++++|++|| +++|+|+|...
T Consensus       138 ~~~~~d~~~~~~~~~~~~~~~~~~vAk~~k-ki~F~~~d~~~  178 (250)
T 3ec3_A          138 VYYSVDFSFDYRTATQFWRNKVLEVAKDFP-EYTFAIADEED  178 (250)
T ss_dssp             EEECCCCSTTTHHHHHHHHHHHHHHHTTCT-TSEEEEEETTT
T ss_pred             EEEecccccccchhHHHHHHHHHHHHHhhc-ceeEEEEcHHH
Confidence            666432     2345679999999999999 99999998654

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=99.93  E-value=2.3e-25  Score=186.23  Aligned_cols=162  Identities=20%  Similarity=0.380  Sum_probs=139.7

Q ss_pred             hhhCCCceeecCHHHHHHhHhCCCeEEEEEecCCChhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeec
Q psy7942          24 KKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTS  102 (216)
Q Consensus        24 ~~~~~~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t  102 (216)
                      +++||+++.|++.+++++|++++++++||||.+++++.+++|.++|..+ +++.|+                      +|
T Consensus         2 ~~~gP~v~~l~s~~~~~~~l~~~~v~vvgff~~~~~~~~~~f~~~A~~lr~~~~F~----------------------~~   59 (252)
T 2h8l_A            2 PLGSPASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFA----------------------HT   59 (252)
T ss_dssp             ----CCEEECCSHHHHHHHHTSSSCEEEEEESCTTSHHHHHHHHHHHHTTTTSCEE----------------------EE
T ss_pred             CcCCCCceeecCHHHHHHHhhcCCeEEEEEECCCCChHHHHHHHHHHhcccCcEEE----------------------EE
Confidence            6889999999999999999999999999999999999999999999999 899999                      88


Q ss_pred             ccHHHHHhcCCCCCeEEEEec------CCCCcccc-cCCCCCHHHHHHHHhhcCCCceeeeCcchHHHhhccCCcceEEE
Q psy7942         103 TNADILAEYSVDDDTVAIFKK------FDEGRVNY-EGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLV  175 (216)
Q Consensus       103 ~~~~v~~~~~v~~p~i~~~~~------~de~~~~y-~G~~~~~~~l~~fi~~~~~P~v~~~~~~~~~~~~~~~~~~~lll  175 (216)
                      .+++++++++++.|+|++||+      +++....| +|++ +.++|.+||..+++|+|+++|.+|+..+++.+   .+++
T Consensus        60 ~~~~v~~~~~~~~p~i~~fk~~~~~~kf~e~~~~y~~g~~-~~~~l~~fi~~~~~Plv~e~t~~n~~~~~~~~---~~v~  135 (252)
T 2h8l_A           60 NVESLVNEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKM-TSGKIKKFIQENIFGICPHMTEDNKDLIQGKD---LLIA  135 (252)
T ss_dssp             CCHHHHHHHCSSSEEEEEECCGGGCCTTSCSEEECCCSSC-CHHHHHHHHHHHSSCSSCEECTTTHHHHSSSS---EEEE
T ss_pred             ChHHHHHHhCCCCCcEEEEcchhhcccccccccccCCCCc-CHHHHHHHHHhcccCCeeecccccHhhhcCCC---eEEE
Confidence            899999999999999999995      56778899 9999 99999999999999999999999999886543   3455


Q ss_pred             EEeCCcc----chhhhhHHHHHHHHhccCc---eEEEEcCCCC
Q psy7942         176 FFSKAAG----HYESHFEPVQTVAKDFREK---EEQDEDDDQP  211 (216)
Q Consensus       176 f~~~~~~----~~~~~~~~l~~vA~~~r~~---~~f~~~d~~~  211 (216)
                      |+..+..    ..+.+++.++++|++|+++   ++|+|+|...
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~~~F~~~d~~~  178 (252)
T 2h8l_A          136 YYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKT  178 (252)
T ss_dssp             EECCBTTTBHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETTT
T ss_pred             EeecchhhcchhHHHHHHHHHHHHHHccccCceEEEEEEchHH
Confidence            6543221    2346899999999999988   9999999754

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.93  E-value=5.6e-25  Score=191.83  Aligned_cols=164  Identities=37%  Similarity=0.639  Sum_probs=151.9

Q ss_pred             hhhCCCceeecCHHHHHHhHhCCCeEEEEEecCCChhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          24 KKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        24 ~~~~~~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      ....+++..|++.+++++|++++++++||||.+.+++..+.|.++|..++++.|+                      +|.
T Consensus        13 ~~~~~~~~~l~~~~~~~~~~~~~~~~vvgff~~~~~~~~~~f~~~A~~~~~~~F~----------------------~t~   70 (361)
T 3uem_A           13 GPGSEFATTLPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFG----------------------ITS   70 (361)
T ss_dssp             CCCCSSSEECCSHHHHHHHHHTSSEEEEEECSCTTSHHHHHHHHHHHHCSSSCEE----------------------EEC
T ss_pred             CCccccceecCCHHHHHHHHhcCCcEEEEEEcCCCchHHHHHHHHHhcCCCceEE----------------------EEC
Confidence            3345678899999999999999999999999998889999999999999999999                      999


Q ss_pred             cHHHHHhcCCCCCeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCCceeeeCcchHHHhhccCCcceEEEEEeCCccc
Q psy7942         104 NADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGH  183 (216)
Q Consensus       104 ~~~v~~~~~v~~p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~  183 (216)
                      +++++++++++.|+|++||++++.+..|+|++ +.++|.+||+.+..|++++++.+++..++..+.+.++++|+..++++
T Consensus        71 ~~~v~~~~~v~~~~i~lfk~f~~~~~~~~g~~-~~~~i~~fi~~~~~p~v~~~~~~~~~~~~~~~~~~~~v~F~~~~~~~  149 (361)
T 3uem_A           71 NSDVFSKYQLDKDGVVLFKKFDEGRNNFEGEV-TKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSD  149 (361)
T ss_dssp             CHHHHHHTTCSSSEEEEEESSTTSEEECCSCC-CHHHHHHHHHHHSSCSEEECSTTTHHHHHSCSCCEEEEEECCSSSSS
T ss_pred             cHHHHHHhCCCCCeEEEEEecCCCccccCCcC-CHHHHHHHHHHcCCCcceecCcccHHHHhcCCCCcEEEEEEeCCchh
Confidence            99999999999999999999999899999999 99999999999999999999999999999987666677788888788


Q ss_pred             hhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         184 YESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       184 ~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      +.++...++++|++|+++++|+++|-.
T Consensus       150 ~~~~~~~~~~~A~~~~~~i~f~~vd~~  176 (361)
T 3uem_A          150 YDGKLSNFKTAAESFKGKILFIFIDSD  176 (361)
T ss_dssp             HHHHHHHHHHHHGGGTTTCEEEEECTT
T ss_pred             HHHHHHHHHHHHHHccCceEEEEecCC
Confidence            999999999999999999999999865

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.91  E-value=1.7e-23  Score=189.10  Aligned_cols=184  Identities=23%  Similarity=0.410  Sum_probs=161.2

Q ss_pred             CC-CcccCCCCCChHHHHHHHHhhhCCCceeecCHHHHHHhHhCCCeEEEEEecCCChhHHHHHHHHHhhC-CCceEEec
Q psy7942           3 SC-LPGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKV-DDLVFDAS   80 (216)
Q Consensus         3 ~g-~~~~Y~G~Rta~~iv~~l~~~~~~~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~~~~~~f~~~A~~~-~~~~F~~~   80 (216)
                      +| .+..|.|+|++++|++|+.++++|++..+.+.++++++++.+++++||||.+.+++....|.++|..+ +++.|+  
T Consensus        84 ~g~~~~~~~G~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~vv~~~~~~~~~~~~~f~~~a~~~~~~~~F~--  161 (481)
T 3f8u_A           84 DGEEAGAYDGPRTADGIVSHLKKQAGPASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFA--  161 (481)
T ss_dssp             TTEEEEECCSCSSHHHHHHHHHHHTSCSEEEECSHHHHHHHTTSSSCEEEEEESCTTCHHHHHHHHHHHHHTTTSCEE--
T ss_pred             CCceeeeecCccCHHHHHHHHHhhcccCceecCCHHHHHHHHhcCCcEEEEEECCCccchHHHHHHHHHHhccCceEE--
Confidence            45 46799999999999999999999999999999999999999999999999988999999999999998 899999  


Q ss_pred             chhhHHHHhhhhccccceeeecccHHHHHhcCCCCCeEEEEe------cCCCCccccc-CCCCCHHHHHHHHhhcCCCce
Q psy7942          81 SELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFK------KFDEGRVNYE-GPASDEAALRKFLSTQSLPLV  153 (216)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~p~i~~~~------~~de~~~~y~-G~~~~~~~l~~fi~~~~~P~v  153 (216)
                                          ++.+++++++++++.+.|++|+      ++++....|+ |.+ +.+.|.+||..+++|++
T Consensus       162 --------------------~~~~~~~~~~~~v~~~~i~~~~p~~~~~~~~~~~~~y~~~~~-~~~~l~~fi~~~~~p~v  220 (481)
T 3f8u_A          162 --------------------HTNVESLVNEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKM-TSGKIKKFIQENIFGIC  220 (481)
T ss_dssp             --------------------EECCHHHHHHHCSSSEEEEEECCGGGCBTTBCSEEECCCSSC-CHHHHHHHHHHHTTTTS
T ss_pred             --------------------EECCHHHHHHhCCCCCcEEEEecccccCccCCcccccCCCCC-CHHHHHHHHHHhCCCCc
Confidence                                8999999999999988899999      6677788999 777 99999999999999999


Q ss_pred             eeeCcchHHHhhccCCcceEEEEEeCCccc----hhhhhHHHHHHHHhccCc---eEEEEcCCCCC
Q psy7942         154 VEFNHETAQKIFGGEIKSHLLVFFSKAAGH----YESHFEPVQTVAKDFREK---EEQDEDDDQPK  212 (216)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~lllf~~~~~~~----~~~~~~~l~~vA~~~r~~---~~f~~~d~~~~  212 (216)
                      +++|.+|+..+++.+   .+++|+..+...    .+.+.+.++++|++|+++   ++|+|+|....
T Consensus       221 ~e~t~~n~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~i~F~~~D~~~~  283 (481)
T 3f8u_A          221 PHMTEDNKDLIQGKD---LLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTF  283 (481)
T ss_dssp             CEECTTTHHHHTTSS---EEEEEECCCTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETTTT
T ss_pred             cccChhHHHHhcCCC---ceEEEEecccccchhhHHHHHHHHHHHHHHhcCCCceEEEEEEcHHHH
Confidence            999999999988643   345555433221    233688999999999998   99999997543

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.87  E-value=1.3e-21  Score=172.61  Aligned_cols=184  Identities=19%  Similarity=0.292  Sum_probs=137.2

Q ss_pred             CCCcc--cCCCCCChHHHHHHHHhhhCCCceeecCHHHHHHhHhCCCeEEEEEecCCChhHHHHHHHHHhhC-CCceEEe
Q psy7942           3 SCLPG--ERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKV-DDLVFDA   79 (216)
Q Consensus         3 ~g~~~--~Y~G~Rta~~iv~~l~~~~~~~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~~~~~~f~~~A~~~-~~~~F~~   79 (216)
                      +|...  +|.|+|++++|++|+.+++++++..+++.++++. +..++.++|+||.+.+++.++.|.++|..+ +++.|+ 
T Consensus        91 ~G~~~~~~~~G~~~~~~l~~~i~~~~~~~v~~l~~~~~l~~-l~~~~~~~v~ff~~~~~~~~~~f~~~A~~~~~~~~F~-  168 (382)
T 2r2j_A           91 NGMMMKREYRGQRSVKALADYIRQQKSDPIQEIRDLAEITT-LDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCAFL-  168 (382)
T ss_dssp             TTEEEEEECCSCCSHHHHHHHHHHHHSCCCEEC-------------CCEEEEEESCSSSHHHHHHHHHHHHHTTTCEEE-
T ss_pred             CCcEeeeeecCcchHHHHHHHHHHhccCCceecCCHHHHHH-hcCCCCEEEEEECCCCChhHHHHHHHHHHhhccceEE-
Confidence            56654  6999999999999999999999999998888988 678888999999998888999999999998 889999 


Q ss_pred             cchhhHHHHhhhhccccceeeecccHHHHHhcCCCCCeEEEEecC--CCCcccccCCCCCHHHHHHHHhhcCCCceeeeC
Q psy7942          80 SSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKF--DEGRVNYEGPASDEAALRKFLSTQSLPLVVEFN  157 (216)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~p~i~~~~~~--de~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~~  157 (216)
                                           .+.+ +++++++++.+. ++|++.  ++....|+|++++.++|.+||..+.+|+++++|
T Consensus       169 ---------------------~~~~-~~~~~~~v~~~p-i~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~p~v~elt  225 (382)
T 2r2j_A          169 ---------------------SAFG-DVSKPERYSGDN-IIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCVPLVREIT  225 (382)
T ss_dssp             ---------------------EEES-CC--------CE-EEEECSSSSSCCEECCSCTTCHHHHHHHHHHHHSCSSEECC
T ss_pred             ---------------------EEeh-hhHHhhCCCCCc-eEECCCCCCCcCcccCCCCCCHHHHHHHHHhcccCceEecC
Confidence                                 6655 577888887533 666665  235688999976899999999999999999999


Q ss_pred             cchHHHhhccCCcceEEEEEeCCc-cchhhhhHHHHHHHHhccCceEEEEcCCCCC
Q psy7942         158 HETAQKIFGGEIKSHLLVFFSKAA-GHYESHFEPVQTVAKDFREKEEQDEDDDQPK  212 (216)
Q Consensus       158 ~~~~~~~~~~~~~~~lllf~~~~~-~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~~  212 (216)
                      .+++..+++.+. +.+++|++.+. +..+.+++.+.++|.+++++++|+|+|....
T Consensus       226 ~~~~~~~~~~~~-~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~id~~~~  280 (382)
T 2r2j_A          226 FENGEELTEEGL-PFLILFHMKEDTESLEIFQNEVARQLISEKGTINFLHADCDKF  280 (382)
T ss_dssp             HHHHHHHHTTCC-CEEEEEECTTCCHHHHHHHHHHHHHTGGGTTTSEEEEEETTTT
T ss_pred             hhhHHHHhcCCC-cEEEEEecCCchHHHHHHHHHHHHHHHHhCCeeEEEEEchHHh
Confidence            999999998774 44566776543 3356677888889999999999999997643

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.83  E-value=1.5e-20  Score=170.93  Aligned_cols=172  Identities=20%  Similarity=0.304  Sum_probs=148.3

Q ss_pred             cccCCCCCChHHHHHHHHhhhCCCceeecCHHHHHHhHhCCC--eEEEEEecCCChhHHHHHHHHHhhC-CCceEEecch
Q psy7942           6 PGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSK--VVVAGLFKDASSELAKTFNEIASKV-DDLVFDASSE   82 (216)
Q Consensus         6 ~~~Y~G~Rta~~iv~~l~~~~~~~v~~l~s~~~~~~~~~~~~--v~~V~f~~~~~~~~~~~f~~~A~~~-~~~~F~~~~~   82 (216)
                      +..|.|+|++++|++|+.++++|++..+++   +++|++.++  +++|+||.+.++.....|..+|..+ +++.|+    
T Consensus       101 ~~~~~G~~~~~~l~~~l~~~~~~~v~~i~~---~~~~~~~~~~~~~~v~~f~~~~~~~~~~f~~~A~~~~~~~~F~----  173 (504)
T 2b5e_A          101 SIDYEGPRTAEAIVQFMIKQSQPAVAVVAD---LPAYLANETFVTPVIVQSGKIDADFNATFYSMANKHFNDYDFV----  173 (504)
T ss_dssp             EEECCSCCSHHHHHHHHHHHTSCSEEECSC---HHHHHHHSCCSSCEEEEEESCCHHHHHHHHHHHHHTTTTCEEE----
T ss_pred             ceeecCCCCHHHHHHHHHHhcCCcceeHHH---HHHHHhcCCCceEEEEEeCCCCchHHHHHHHHHHHhhcCcEEE----
Confidence            779999999999999999999999999988   888998888  9999999988889999999999999 899999    


Q ss_pred             hhHHHHhhhhccccceeeecccHHHHHhcCCCCCeEEEEecCCCCcccccCC-CC--CHHHHHHHHhhcCCCceeeeCcc
Q psy7942          83 LAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGP-AS--DEAALRKFLSTQSLPLVVEFNHE  159 (216)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~p~i~~~~~~de~~~~y~G~-~~--~~~~l~~fi~~~~~P~v~~~~~~  159 (216)
                                        .+.  +++++++++   |++|++++ .+..|+|+ +.  +.+.|.+||..+.+|+++++|.+
T Consensus       174 ------------------~~~--~~~~~~~~~---i~l~~~~~-~~~~~~g~~~~~~~~~~l~~fi~~~~~p~v~~~t~~  229 (504)
T 2b5e_A          174 ------------------SAE--NADDDFKLS---IYLPSAMD-EPVVYNGKKADIADADVFEKWLQVEALPYFGEIDGS  229 (504)
T ss_dssp             ------------------EEE--CTTSCCEEE---EEETTEEE-EEEECCSCHHHHTSHHHHHHHHHHHSSCSSCBCCHH
T ss_pred             ------------------EEH--HHHHhcCCe---EEecCCCC-cccccCCcccccCCHHHHHHHHHhcccCCcccCCHh
Confidence                              665  577777765   88999876 67889998 42  78999999999999999999999


Q ss_pred             hHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         160 TAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       160 ~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      ++..+++.+.+ .+++|++.+ +..+.+.+.++++|++|+++++|+|+|..
T Consensus       230 ~~~~~~~~~~~-~~~l~~~~~-~~~~~~~~~l~~~a~~~~~~i~F~~id~~  278 (504)
T 2b5e_A          230 VFAQYVESGLP-LGYLFYNDE-EELEEYKPLFTELAKKNRGLMNFVSIDAR  278 (504)
T ss_dssp             HHHHHHHTTSC-EEEEEESSH-HHHHHHHHHHHHHHHHTTTTCEEEEEEHH
T ss_pred             HHHHHhcCCCc-EEEEEecCc-ccHHHHHHHHHHHHHhcCCeeEEEEEehh
Confidence            99999988753 344455432 33478999999999999999999999953

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=99.80  E-value=1.9e-19  Score=135.59  Aligned_cols=107  Identities=25%  Similarity=0.474  Sum_probs=99.4

Q ss_pred             HHHhhhCCCcee--ecCHHHHHHhHhCCCeEEEEEecCCChhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccce
Q psy7942          21 WLLKKTGPPAKE--FTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLV   98 (216)
Q Consensus        21 ~l~~~~~~~v~~--l~s~~~~~~~~~~~~v~~V~f~~~~~~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~   98 (216)
                      -|++++||++..  |++.+++++|++++++++||||++++++.++.|.++|..++++.|+                    
T Consensus        12 ~m~kq~gP~~~~~~i~s~~e~e~fi~~~~v~VVGfF~~~~~~~~~~F~~~A~~~~d~~F~--------------------   71 (124)
T 2l4c_A           12 KSSDGPGAAQEPTWLTDVPAAMEFIAATEVAVIGFFQDLEIPAVPILHSMVQKFPGVSFG--------------------   71 (124)
T ss_dssp             SSCCCSCCSCCCEECCSHHHHHHHHHTSSEEEEEECSCTTSTHHHHHHHHHHHCTTSEEE--------------------
T ss_pred             HHHhccCCCCcceEcCCHHHHHHHHhcCCCEEEEEECCCCChhHHHHHHHHHhCCCceEE--------------------
Confidence            367899999865  9999999999999999999999999999999999999999999999                    


Q ss_pred             eeecccHHHHHhcCCCCCeEEEEecCCCCcccccC----CCCCHHHHHHHHhhcCC
Q psy7942          99 FVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEG----PASDEAALRKFLSTQSL  150 (216)
Q Consensus        99 ~~~t~~~~v~~~~~v~~p~i~~~~~~de~~~~y~G----~~~~~~~l~~fi~~~~~  150 (216)
                        +|.+++++++++++.|+|++||++++.+..|+|    ++ +.++|.+||..+++
T Consensus        72 --~t~~~~v~~~~~v~~~~vvlfkkfde~~~~~~g~~~~~~-~~~~L~~FI~~n~l  124 (124)
T 2l4c_A           72 --ISTDSEVLTHYNITGNTICLFRLVDNEQLNLEDEDIESI-DATKLSRFIEINSL  124 (124)
T ss_dssp             --EECCHHHHHHTTCCSSCEEEEETTTTEEEEECHHHHTTC-CHHHHHHHHHHHCC
T ss_pred             --EEChHHHHHHcCCCCCeEEEEEcCCCCceeecCcccCCC-CHHHHHHHHHHhcC
Confidence              999999999999999999999999988889996    78 99999999998763

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.72  E-value=2.8e-16  Score=149.61  Aligned_cols=187  Identities=14%  Similarity=0.230  Sum_probs=157.2

Q ss_pred             CCCcccCCCCCChHHHHHHHHhhhCCCceeecCHHHHHHhHhC---CCeEEEEEecCCC---hhHHHHHHHHHhhC-CCc
Q psy7942           3 SCLPGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIAD---SKVVVAGLFKDAS---SELAKTFNEIASKV-DDL   75 (216)
Q Consensus         3 ~g~~~~Y~G~Rta~~iv~~l~~~~~~~v~~l~s~~~~~~~~~~---~~v~~V~f~~~~~---~~~~~~f~~~A~~~-~~~   75 (216)
                      +|....|.|.+++++|.+|+.+...|+|..|+ .+++++++..   +.+++|.||.+||   ....+.|.++|+.+ +.+
T Consensus       518 ~g~~~~~~g~~~~~~l~~fi~~~~~~~v~~l~-~~~f~~~v~~~~~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~~~v  596 (780)
T 3apo_A          518 QSSIHEYEGHHSAEQILEFIEDLRNPSVVSLT-PSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLI  596 (780)
T ss_dssp             TTEEEEECSCSCHHHHHHHHHHHHSCSEEECC-HHHHHHHTTTCCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTS
T ss_pred             CCceeeecCcccHHHHHHHHHhhcccceeecC-cccHHHHhhccCCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCCe
Confidence            45567899999999999999999999999886 5799998875   5678999999997   45678999999988 678


Q ss_pred             eEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeEEEEecCCC---CcccccC-CCCCHHHHHHHHhhcCC
Q psy7942          76 VFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAIFKKFDE---GRVNYEG-PASDEAALRKFLSTQSL  150 (216)
Q Consensus        76 ~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~~de---~~~~y~G-~~~~~~~l~~fi~~~~~  150 (216)
                      .|+              .+|     ++.++.+++++++++ |+|++|++.+.   .+..|+| .+ +.++|.+||.....
T Consensus       597 ~~~--------------~vd-----~~~~~~l~~~~~v~~~Pti~~~~~~~~~~~~~~~y~g~~~-~~~~l~~fi~~~~~  656 (780)
T 3apo_A          597 NVG--------------SVD-----CGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNR-DAYSLRSWGLGFLP  656 (780)
T ss_dssp             EEE--------------EEE-----TTTTHHHHHHTTCCSSSEEEEECCCSSSCCSCEECCCSCC-SHHHHHHHHHTTSC
T ss_pred             EEE--------------EEE-----CcchHHHHHHcCCCCCCeEEEEcCCCcCccchhhcCCCCC-CHHHHHHHHhhhcc
Confidence            898              566     777888999999986 99999997543   3567999 77 99999999999999


Q ss_pred             CceeeeCcchHHH-hhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         151 PLVVEFNHETAQK-IFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       151 P~v~~~~~~~~~~-~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      |.+.+++.+++.. +...+ ++.++.|..++++.+......+.++|+++++++.|+++|...
T Consensus       657 ~~v~~l~~~~~~~~~~~~~-~~v~v~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~vd~~~  717 (780)
T 3apo_A          657 QASIDLTPQTFNEKVLQGK-THWVVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQA  717 (780)
T ss_dssp             CCSEEECHHHHHHHTTTCS-SCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTT
T ss_pred             cccccCCHHHHHHHHhcCC-CeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence            9999999999865 44444 445666888888888889999999999999999999888653

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.70  E-value=5.2e-16  Score=147.77  Aligned_cols=205  Identities=11%  Similarity=0.103  Sum_probs=159.0

Q ss_pred             CCC-cccCCCCCChHHHHHHHHhhhCCCceeecCH---HHHHHhHhCCCeEEEEEecCCC-hhHHHHHHHHHhhC-CCce
Q psy7942           3 SCL-PGERRGGRTAEDIVNWLLKKTGPPAKEFTSV---DEIKAFIADSKVVVAGLFKDAS-SELAKTFNEIASKV-DDLV   76 (216)
Q Consensus         3 ~g~-~~~Y~G~Rta~~iv~~l~~~~~~~v~~l~s~---~~~~~~~~~~~v~~V~f~~~~~-~~~~~~f~~~A~~~-~~~~   76 (216)
                      +|. ...|.|.|++++|++|+.+++++++..+++.   +++++++..+.+++|+|+...+ ......+.++|..+ +.+.
T Consensus       196 ~g~~~~~~~G~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~vi~f~~~~~~~~~~~~~~~l~~~f~~~~~  275 (780)
T 3apo_A          196 SGMAAVKYNGDRSKESLVAFAMQHVRSTVTELSTGNFVNAIETAFAAGVGWLITFCSKGEDCLTSQTRLRLSGMLDGLVN  275 (780)
T ss_dssp             TTSCCEECCSCSCHHHHHHHHHTTSCCCEEECCHHHHHHHHHHHHHHTCEEEEEEECTTSCCCCHHHHHHHHHHTTTTEE
T ss_pred             CCcEeeEecCCCCHHHHHHHHHHhchhhheeccchhhHHHHHhhhccCCCEEEEEecCcccccCHHHHHHHHHHhhccce
Confidence            555 5789999999999999999999999999887   7888988888889999887643 23445666666665 4444


Q ss_pred             EEec--c-------------------------------------------------------------------------
Q psy7942          77 FDAS--S-------------------------------------------------------------------------   81 (216)
Q Consensus        77 F~~~--~-------------------------------------------------------------------------   81 (216)
                      |++-  .                                                                         
T Consensus       276 f~~v~c~~~~~l~~~~gi~~~p~~~f~~~~~~~~~~~~~~~y~g~~~~~~i~~~i~~~~p~v~~it~~~f~~~~~~~~~l  355 (780)
T 3apo_A          276 VGWVDCDAQDSLCKSLDTTASTTAYFPPGATLNDREKSSVLFLNSLDAKEIYMEIIHNLPDFELLSANQLEDRLAHHRWL  355 (780)
T ss_dssp             EEEEETTTSHHHHTCC-----CEEEECTTCCSSTTTGGGSEEECCCCHHHHHHHHHHHSCCCCEECHHHHHHHHTTSEEE
T ss_pred             EEEEEcCCCHHHHHHhCCCCCceeeeccccccCCCcccceeccccccHHHHHHHHHHhCCCcccCCHHHHHHHhccCCeE
Confidence            4431  0                                                                         


Q ss_pred             ----------hhhHHHHhhhhccc-c-ceee---ecccHHHHHhcCCCCCeEEEEecCC-CCcccccCCCCCHHHHHHHH
Q psy7942          82 ----------ELAKTFNEIASKVD-D-LVFV---TSTNADILAEYSVDDDTVAIFKKFD-EGRVNYEGPASDEAALRKFL  145 (216)
Q Consensus        82 ----------~~~~~~~~~~~~~~-~-~~~~---~t~~~~v~~~~~v~~p~i~~~~~~d-e~~~~y~G~~~~~~~l~~fi  145 (216)
                                ...+.+.++|..++ + ..++   ++.++.++++++++.|++++|++++ +....|+|++ +.++|.+|+
T Consensus       356 v~F~~~~~~~~~~~~~~~~A~~~~~~~i~f~~~D~~~~~~~~~~~~~~~p~i~l~~~~~~e~~~~~~g~~-~~~~i~~f~  434 (780)
T 3apo_A          356 VFFHFGKNENANDPELKKLKTLLKNEHIQVVRFDCSSAPGICSDLYVFQPSLAVFKGQGTKEYEIHHGKK-ILYDILAFA  434 (780)
T ss_dssp             EEEECC-----CCGGGGGHHHHHGGGTEEEEEEEGGGCHHHHHHTTCCSCEEEEEESSTTSSEEECCSCC-CHHHHHHHH
T ss_pred             EEEecCCccccchHHHHHHHHhhccCceeEEEEeCCCchhhHhhccccCChhhhccCCCcceeeecccHh-hHHHHHHHh
Confidence                      00134455555553 2 2222   2346779999999889999999987 5678899998 999999999


Q ss_pred             hhcCCCceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         146 STQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       146 ~~~~~P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      ..+..|++.+++.+++..+ . + .+.++.|+.+.++++......|.++|++|++++.|+.+|...
T Consensus       435 ~~~~~~~v~~l~~~~~~~~-~-~-~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~~v~~~~vd~~~  497 (780)
T 3apo_A          435 KESVNSHVTTLGPQNFPAS-D-K-EPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTI  497 (780)
T ss_dssp             HHHHTSCEEECCTTTSCTT-C-C-SCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT
T ss_pred             hhccCCCCEecCHHHHHHc-C-C-CeEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEeCCC
Confidence            9999999999999998877 3 3 345667888888788899999999999999999999998653

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.59  E-value=4.9e-15  Score=126.73  Aligned_cols=130  Identities=21%  Similarity=0.327  Sum_probs=107.8

Q ss_pred             cccCCCCCChHHHHHHHHhhhCCCceeecCHHHHHHhHhCC-CeEEEEEecCCChhHHHHHHHHHhhC-CCceEEecchh
Q psy7942           6 PGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADS-KVVVAGLFKDASSELAKTFNEIASKV-DDLVFDASSEL   83 (216)
Q Consensus         6 ~~~Y~G~Rta~~iv~~l~~~~~~~v~~l~s~~~~~~~~~~~-~v~~V~f~~~~~~~~~~~f~~~A~~~-~~~~F~~~~~~   83 (216)
                      +..|.|+|++++|++|+.+++++++..|.+.+++++|++.+ .+.+++ |.. .+.....|..+|..+ +.+.|+     
T Consensus       121 ~~~y~G~r~~~~i~~fl~~~~~~~v~~i~~~~~l~~~l~~~~~~~vi~-fs~-~~~~~~~f~~~A~~~~~~~~F~-----  193 (298)
T 3ed3_A          121 NEVYSGARTLAPIVDFSLSRIRSYVKKFVRIDTLGSLLRKSPKLSVVL-FSK-QDKISPVYKSIALDWLGKFDFY-----  193 (298)
T ss_dssp             EEECCSCCSHHHHHHHHHTTCCCCEEECSCGGGHHHHHTSCSSEEEEE-EES-SSSCCHHHHHHHHHTBTTEEEE-----
T ss_pred             ceeecCCcCHHHHHHHHHHhcccccEEcCCHHHHHHHHhcCCceEEEE-EcC-CCcchHHHHHHHHHhhcCcEEE-----
Confidence            67999999999999999999999999999999999999875 555555 533 445678999999998 899999     


Q ss_pred             hHHHHhhhhccccceeeecccHHHHHhc-----C-------------------CCCCeEEEEecCCCCcccccC-CCCCH
Q psy7942          84 AKTFNEIASKVDDLVFVTSTNADILAEY-----S-------------------VDDDTVAIFKKFDEGRVNYEG-PASDE  138 (216)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~t~~~~v~~~~-----~-------------------v~~p~i~~~~~~de~~~~y~G-~~~~~  138 (216)
                                       .+.++++++.+     +                   .+.|+|++|++.++.+..|+| .+ +.
T Consensus       194 -----------------~v~~~~~a~~~~~~~~~~~~p~i~~~~~~~~~~~~~~~~P~lv~~~~~~~~~~~y~g~~~-~~  255 (298)
T 3ed3_A          194 -----------------SISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKLVVFDADKDKFWEYEGNSI-NK  255 (298)
T ss_dssp             -----------------EEEGGGCCCCCTTCTTSTTCHHHHHHHHHHHHHHTTCSSCEEEEEETTTTEEEECCCSSC-CH
T ss_pred             -----------------EEcchHhhhhhhhhhhcccCcchhhhhhcccccccccCCCeEEEEcCCCCceEEeccccC-CH
Confidence                             56555555322     2                   246999999988888999996 56 99


Q ss_pred             HHHHHHHh--hcCCCceeeeCcch
Q psy7942         139 AALRKFLS--TQSLPLVVEFNHET  160 (216)
Q Consensus       139 ~~l~~fi~--~~~~P~v~~~~~~~  160 (216)
                      +.|.+||.  .+..|++++++..+
T Consensus       256 ~~i~~fi~~~~~~~p~~~~ls~~~  279 (298)
T 3ed3_A          256 NDISKFLRDTFSITPNEGPFSRRS  279 (298)
T ss_dssp             HHHHHHHHHHHTCCCSSSTTSHHH
T ss_pred             HHHHHHHHhhcCCCCCcCCCchHH
Confidence            99999999  78999999999754

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.57  E-value=3.6e-13  Score=116.94  Aligned_cols=187  Identities=14%  Similarity=0.186  Sum_probs=144.9

Q ss_pred             CCcccCCCCCChHHHHHHHHhhhCCCceeecCHHHHHHhHhC-CCeEEEEEecCCC---hhHHHHHHHHHhhC-CCceEE
Q psy7942           4 CLPGERRGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIAD-SKVVVAGLFKDAS---SELAKTFNEIASKV-DDLVFD   78 (216)
Q Consensus         4 g~~~~Y~G~Rta~~iv~~l~~~~~~~v~~l~s~~~~~~~~~~-~~v~~V~f~~~~~---~~~~~~f~~~A~~~-~~~~F~   78 (216)
                      +.+..|+|+.++++|++|+.....|.+..++. +++..+..+ .+.++|.|+.+|+   ....+.|.++|+.+ +.+.|+
T Consensus        93 ~~~~~~~g~~~~~~i~~fi~~~~~p~v~~~~~-~~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~i~f~  171 (361)
T 3uem_A           93 EGRNNFEGEVTKENLLDFIKHNQLPLVIEFTE-QTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFI  171 (361)
T ss_dssp             TSEEECCSCCCHHHHHHHHHHHSSCSEEECST-TTHHHHHSCSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTTCEEE
T ss_pred             CCccccCCcCCHHHHHHHHHHcCCCcceecCc-ccHHHHhcCCCCcEEEEEEeCCchhHHHHHHHHHHHHHHccCceEEE
Confidence            45678999999999999999999999999875 566676654 4567788888776   45677999999998 678888


Q ss_pred             ecchhhHHHHhhhhccccceeeec--ccHHHHHhcCCC---CCeEEEEecCCCCccccc---CCCCCHHHHHHHHhhcC-
Q psy7942          79 ASSELAKTFNEIASKVDDLVFVTS--TNADILAEYSVD---DDTVAIFKKFDEGRVNYE---GPASDEAALRKFLSTQS-  149 (216)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~t--~~~~v~~~~~v~---~p~i~~~~~~de~~~~y~---G~~~~~~~l~~fi~~~~-  149 (216)
                                    .+|     +.  .++.+++.|+++   .|++++++..+ ....|.   |.+ +.+.|.+|+.... 
T Consensus       172 --------------~vd-----~~~~~~~~~~~~fgi~~~~~P~~~~~~~~~-~~~ky~~~~~~~-~~~~l~~fi~~~l~  230 (361)
T 3uem_A          172 --------------FID-----SDHTDNQRILEFFGLKKEECPAVRLITLEE-EMTKYKPESEEL-TAERITEFCHRFLE  230 (361)
T ss_dssp             --------------EEC-----TTSGGGHHHHHHTTCCTTTCSEEEEEECC---CCEECCSSCCC-CHHHHHHHHHHHHT
T ss_pred             --------------Eec-----CChHHHHHHHHHcCCCccCCccEEEEEcCC-cccccCCCcccc-CHHHHHHHHHHHhc
Confidence                          344     43  467899999996   49999999633 234554   778 9999999998731 


Q ss_pred             -----------C------CceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCc--eEEEEcCCC
Q psy7942         150 -----------L------PLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREK--EEQDEDDDQ  210 (216)
Q Consensus       150 -----------~------P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~--~~f~~~d~~  210 (216)
                                 .      ..+..++.+++..+....-+..++.|+.++++++......+.++|++|+++  +.++.+|..
T Consensus       231 g~~~~~~~s~~~p~~~~~~~v~~l~~~~f~~~~~~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~  310 (361)
T 3uem_A          231 GKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDST  310 (361)
T ss_dssp             TCSCCCCBCCCCCTTTTTSSSEEECTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETT
T ss_pred             CCCcccccCCCCCcccccCCcEEeecCchhhhcccCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECC
Confidence                       1      237788888888766333245566788899988999999999999999875  899998876


Q ss_pred             CC
Q psy7942         211 PK  212 (216)
Q Consensus       211 ~~  212 (216)
                      ..
T Consensus       311 ~~  312 (361)
T 3uem_A          311 AN  312 (361)
T ss_dssp             TC
T ss_pred             cc
Confidence            54

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.44  E-value=1.3e-12  Score=114.52  Aligned_cols=154  Identities=16%  Similarity=0.231  Sum_probs=122.7

Q ss_pred             CceeecCHHHHHHhHhCCCeEEEEEecCCChhH--H-------HHHHHHHhhC-C-CceEEecchhhHHHHhhhhccccc
Q psy7942          29 PAKEFTSVDEIKAFIADSKVVVAGLFKDASSEL--A-------KTFNEIASKV-D-DLVFDASSELAKTFNEIASKVDDL   97 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~~~--~-------~~f~~~A~~~-~-~~~F~~~~~~~~~~~~~~~~~~~~   97 (216)
                      .|..|+ .++++++++++++++|.||++||+..  .       ..|..+|..+ . .+.|+              +||  
T Consensus        14 ~v~~lt-~~~f~~~i~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~--------------~Vd--   76 (367)
T 3us3_A           14 RVINVN-AKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFG--------------LVD--   76 (367)
T ss_dssp             CCEECC-TTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEE--------------EEE--
T ss_pred             ccEECC-HHHHHHHHhhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEE--------------EEe--
Confidence            356665 57899999999999999999999552  2       2678888877 3 58888              677  


Q ss_pred             eeeecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCCceeeeCc-chHHHhhc-cCCcceEE
Q psy7942          98 VFVTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNH-ETAQKIFG-GEIKSHLL  174 (216)
Q Consensus        98 ~~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~~~-~~~~~~~~-~~~~~~ll  174 (216)
                         ++.+++++++|+|.+ ||+++|++  +....|.|.+ +.+.|.+||..+..|.+.+++. +++..+.. .. ...++
T Consensus        77 ---~~~~~~l~~~~~V~~~PTl~~f~~--G~~~~y~G~~-~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~-~~~vv  149 (367)
T 3us3_A           77 ---SEKDAAVAKKLGLTEEDSIYVFKE--DEVIEYDGEF-SADTLVEFLLDVLEDPVELIEGERELQAFENIED-EIKLI  149 (367)
T ss_dssp             ---TTTTHHHHHHHTCCSTTEEEEEET--TEEEECCSCC-SHHHHHHHHHHHHSCSEEECCSHHHHHHHHHCCS-SCEEE
T ss_pred             ---CcccHHHHHHcCCCcCceEEEEEC--CcEEEeCCCC-CHHHHHHHHHHhcCCCcEEcCCHHHHHHHhccCC-CcEEE
Confidence               888999999999997 99999995  3457899999 9999999999999999999964 67777776 33 34555


Q ss_pred             EEEeCCccchhhhhHHHHHHHHhccCceEEEEcCC
Q psy7942         175 VFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDD  209 (216)
Q Consensus       175 lf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~  209 (216)
                      .|+...   .......+.++|+.+++++.|..+..
T Consensus       150 ~ff~~~---~~~~~~~f~~~A~~~~~~~~F~~~~~  181 (367)
T 3us3_A          150 GYFKNK---DSEHYKAFKEAAEEFHPYIPFFATFD  181 (367)
T ss_dssp             EECSCT---TCHHHHHHHHHHHHHTTTSCEEEECC
T ss_pred             EEECCC---CchHHHHHHHHHHhhcCCcEEEEECC
Confidence            666542   24556889999999999998887654

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.42  E-value=5e-12  Score=109.75  Aligned_cols=153  Identities=18%  Similarity=0.211  Sum_probs=121.9

Q ss_pred             ceeecCHHHHHHhHhCCCeEEEEEecCCCh--hHHHH-------HHHHHhhC-C-CceEEecchhhHHHHhhhhccccce
Q psy7942          30 AKEFTSVDEIKAFIADSKVVVAGLFKDASS--ELAKT-------FNEIASKV-D-DLVFDASSELAKTFNEIASKVDDLV   98 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~--~~~~~-------f~~~A~~~-~-~~~F~~~~~~~~~~~~~~~~~~~~~   98 (216)
                      |..|+ .++++++++++++++|.||++||+  .+.+.       |.++|..+ + .+.|+              .||   
T Consensus        13 v~~l~-~~~f~~~i~~~~~~lV~F~a~wC~c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~--------------~Vd---   74 (350)
T 1sji_A           13 VVSLT-EKNFKQVLKKYDVLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKDIGFV--------------MVD---   74 (350)
T ss_dssp             CEEEC-HHHHHHHHTTCSEEEEEEECCSCSSSTTSHHHHHHHHHHHHHHHHGGGSSEEEE--------------EEE---
T ss_pred             cEECC-HHHHHHHHhhCCeEEEEEECCCCcchhhCchhhhhhHHHHHHHHHHhhcCcEEE--------------EEe---
Confidence            55664 688999999999999999999994  33444       88889887 3 58888              566   


Q ss_pred             eeecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCCceeeeC-cchHHHhhc-cCCcceEEE
Q psy7942          99 FVTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFN-HETAQKIFG-GEIKSHLLV  175 (216)
Q Consensus        99 ~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~~-~~~~~~~~~-~~~~~~lll  175 (216)
                        ++.+++++++|++.+ |++++|+++  ....|.|.+ +.+.|.+||.....|.+.+++ .+++..+.+ .. ...++.
T Consensus        75 --~~~~~~l~~~~~v~~~Pt~~~~~~g--~~~~~~G~~-~~~~l~~~i~~~~~~~~~~l~~~~~~~~~~~~~~-~~~vv~  148 (350)
T 1sji_A           75 --AKKEAKLAKKLGFDEEGSLYVLKGD--RTIEFDGEF-AADVLVEFLLDLIEDPVEIINSKLEVQAFERIED-QIKLIG  148 (350)
T ss_dssp             --TTTTHHHHHHHTCCSTTEEEEEETT--EEEEECSCC-CHHHHHHHHHTTSSCSEEECCSHHHHHHHHHCCS-SCEEEE
T ss_pred             --CCCCHHHHHhcCCCccceEEEEECC--cEEEecCCC-CHHHHHHHHHHhcCCcceeccchHHHHHHhccCC-CcEEEE
Confidence              788899999999987 999999863  367899999 999999999999999999996 567777766 44 344556


Q ss_pred             EEeCCccchhhhhHHHHHHHHhccCceEEEEcCC
Q psy7942         176 FFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDD  209 (216)
Q Consensus       176 f~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~  209 (216)
                      |+...   .......+.++|+.+++++.|..+..
T Consensus       149 ff~~~---~~~~~~~~~~~A~~~~~~~~f~~~~~  179 (350)
T 1sji_A          149 FFKSE---ESEYYKAFEEAAEHFQPYIKFFATFD  179 (350)
T ss_dssp             ECSCT---TSHHHHHHHHHHHHTTTTSEEEEECC
T ss_pred             EECCC---CcHHHHHHHHHHHhhccCcEEEEECC
Confidence            66542   23446889999999999999988753

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.40  E-value=8e-12  Score=101.85  Aligned_cols=159  Identities=18%  Similarity=0.332  Sum_probs=127.0

Q ss_pred             CceeecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-C---CceEEecchhhHHHHhhhhccccceeee
Q psy7942          29 PAKEFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKV-D---DLVFDASSELAKTFNEIASKVDDLVFVT  101 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~---~~~F~~~~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      .+..++ .++++.++.++++++|.|+++||.   ...+.|.+++..+ +   ++.|+              .+|     +
T Consensus        16 ~v~~l~-~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~--------------~vd-----~   75 (241)
T 3idv_A           16 GVLVLN-DANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVA--------------KID-----A   75 (241)
T ss_dssp             TEEEEC-TTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEE--------------EEE-----T
T ss_pred             CcEEec-ccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEE--------------EEe-----c
Confidence            456665 478999999999999999999984   5567888888876 2   27777              455     6


Q ss_pred             cccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCC-------ceeeeCcchHHHhhccCCcceE
Q psy7942         102 STNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLP-------LVVEFNHETAQKIFGGEIKSHL  173 (216)
Q Consensus       102 t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P-------~v~~~~~~~~~~~~~~~~~~~l  173 (216)
                      ..+++++++|++.. |++++|++  +..+.|.|.. +.+.|.+||.....|       .+..++.+++..+...+ +..+
T Consensus        76 ~~~~~l~~~~~v~~~Pt~~~~~~--g~~~~~~g~~-~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  151 (241)
T 3idv_A           76 TSASVLASRFDVSGYPTIKILKK--GQAVDYEGSR-TQEEIVAKVREVSQPDWTPPPEVTLVLTKENFDEVVNDA-DIIL  151 (241)
T ss_dssp             TTCHHHHHHTTCCSSSEEEEEET--TEEEECCSCS-CHHHHHHHHHHHHSTTCCCCCCSSEECCTTTHHHHHHHC-SEEE
T ss_pred             cCCHHHHHhcCCCcCCEEEEEcC--CCcccccCcc-cHHHHHHHHhhccCcccccccccceeccHHHHHHhhccC-CeEE
Confidence            77889999999987 99999985  4456799999 999999999886443       46678888888887765 3456


Q ss_pred             EEEEeCCccchhhhhHHHHHHHHhccCc---eEEEEcCCCC
Q psy7942         174 LVFFSKAAGHYESHFEPVQTVAKDFREK---EEQDEDDDQP  211 (216)
Q Consensus       174 llf~~~~~~~~~~~~~~l~~vA~~~r~~---~~f~~~d~~~  211 (216)
                      +.|...+..........+.++|++++++   +.|+.+|...
T Consensus       152 v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~  192 (241)
T 3idv_A          152 VEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATA  192 (241)
T ss_dssp             EEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTT
T ss_pred             EEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCC
Confidence            6688888888888899999999999875   8888887543

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.39  E-value=2.7e-11  Score=103.45  Aligned_cols=155  Identities=17%  Similarity=0.249  Sum_probs=118.4

Q ss_pred             CceeecCHHHHHHhHh-CCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeec-
Q psy7942          29 PAKEFTSVDEIKAFIA-DSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTS-  102 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~~-~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t-  102 (216)
                      .+..| +.+++++++. .+++++|.|+++||.   .+.+.|.++|..+ +.+.|+              .++     +. 
T Consensus        18 ~vv~l-t~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~--------------~v~-----~d~   77 (298)
T 3ed3_A           18 HISEL-TPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVA--------------AVN-----CDL   77 (298)
T ss_dssp             TCEEC-CHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEE--------------EEE-----TTS
T ss_pred             CeEEe-CHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEE--------------EEE-----ccC
Confidence            45566 4689999884 578899999999984   5577899999988 456666              232     22 


Q ss_pred             -ccHHHHHhcCCCC-CeEEEEecCC----------------CCcccccCCCCCHHHHHHHHhhcCCCceeeeCc-chHHH
Q psy7942         103 -TNADILAEYSVDD-DTVAIFKKFD----------------EGRVNYEGPASDEAALRKFLSTQSLPLVVEFNH-ETAQK  163 (216)
Q Consensus       103 -~~~~v~~~~~v~~-p~i~~~~~~d----------------e~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~~~-~~~~~  163 (216)
                       .+++++++|++.+ |++++|++..                .....|.|.+ +.+.|.+|+.....|.+..++. +++..
T Consensus        78 ~~~~~l~~~~~I~~~Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r-~~~~i~~fl~~~~~~~v~~i~~~~~l~~  156 (298)
T 3ed3_A           78 NKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGAR-TLAPIVDFSLSRIRSYVKKFVRIDTLGS  156 (298)
T ss_dssp             TTTHHHHHHTTCCBSSEEEEEECCCC-------------CCCEEEECCSCC-SHHHHHHHHHTTCCCCEEECSCGGGHHH
T ss_pred             ccCHHHHHhCCCCccceEEEEECCceeecccccccccccccccceeecCCc-CHHHHHHHHHHhcccccEEcCCHHHHHH
Confidence             5688999999986 9999999743                1256899999 9999999999999999999964 57777


Q ss_pred             hhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCC
Q psy7942         164 IFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDD  209 (216)
Q Consensus       164 ~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~  209 (216)
                      +....-.+.+++| ..+    ......++.+|.+|++++.|..++.
T Consensus       157 ~l~~~~~~~vi~f-s~~----~~~~~~f~~~A~~~~~~~~F~~v~~  197 (298)
T 3ed3_A          157 LLRKSPKLSVVLF-SKQ----DKISPVYKSIALDWLGKFDFYSISN  197 (298)
T ss_dssp             HHTSCSSEEEEEE-ESS----SSCCHHHHHHHHHTBTTEEEEEEEG
T ss_pred             HHhcCCceEEEEE-cCC----CcchHHHHHHHHHhhcCcEEEEEcc
Confidence            7765423334444 433    2345789999999999999987754

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.36  E-value=1.6e-11  Score=110.52  Aligned_cols=154  Identities=21%  Similarity=0.365  Sum_probs=123.3

Q ss_pred             ceeecCHHHHHHhHhCC---CeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeec
Q psy7942          30 AKEFTSVDEIKAFIADS---KVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTS  102 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~---~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t  102 (216)
                      |..|+ .+++++.+.++   ++++|.||++||.   .+.+.|.++|..+ +.+.|+              .||     ++
T Consensus         3 v~~l~-~~~f~~~i~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~v~~~--------------~vd-----~~   62 (481)
T 3f8u_A            3 VLELT-DDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLA--------------KVD-----CT   62 (481)
T ss_dssp             CEEEC-TTTHHHHTTCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCCEE--------------EEE-----TT
T ss_pred             eEEec-HHHHHHHHHhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCceEEE--------------EEE-----CC
Confidence            45664 47889999877   9999999999984   5677999999998 458888              566     77


Q ss_pred             ccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCCceeeeC-cchHHHhhccCCcceEEEEEeCC
Q psy7942         103 TNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFN-HETAQKIFGGEIKSHLLVFFSKA  180 (216)
Q Consensus       103 ~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~~-~~~~~~~~~~~~~~~lllf~~~~  180 (216)
                      .+++++++|++.+ |++++|+++ +....|.|.. +.+.|.+|+.....|.+.+++ .+.+..+.+.. ...++.|+...
T Consensus        63 ~~~~l~~~~~v~~~Ptl~~~~~g-~~~~~~~G~~-~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~vv~~~~~~  139 (481)
T 3f8u_A           63 ANTNTCNKYGVSGYPTLKIFRDG-EEAGAYDGPR-TADGIVSHLKKQAGPASVPLRTEEEFKKFISDK-DASIVGFFDDS  139 (481)
T ss_dssp             TCHHHHHHTTCCEESEEEEEETT-EEEEECCSCS-SHHHHHHHHHHHTSCSEEEECSHHHHHHHTTSS-SCEEEEEESCT
T ss_pred             CCHHHHHhcCCCCCCEEEEEeCC-ceeeeecCcc-CHHHHHHHHHhhcccCceecCCHHHHHHHHhcC-CcEEEEEECCC
Confidence            8899999999987 999999963 2357799998 999999999999999999995 45677766654 34455566433


Q ss_pred             ccchhhhhHHHHHHHHhccCceEEEEcCC
Q psy7942         181 AGHYESHFEPVQTVAKDFREKEEQDEDDD  209 (216)
Q Consensus       181 ~~~~~~~~~~l~~vA~~~r~~~~f~~~d~  209 (216)
                         .......+.++|..+++++.|..+..
T Consensus       140 ---~~~~~~~f~~~a~~~~~~~~F~~~~~  165 (481)
T 3f8u_A          140 ---FSEAHSEFLKAASNLRDNYRFAHTNV  165 (481)
T ss_dssp             ---TCHHHHHHHHHHHHHTTTSCEEEECC
T ss_pred             ---ccchHHHHHHHHHHhccCceEEEECC
Confidence               24567899999999999999977654

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.35  E-value=4e-11  Score=108.68  Aligned_cols=154  Identities=19%  Similarity=0.339  Sum_probs=123.7

Q ss_pred             CceeecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-C-CceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          29 PAKEFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKV-D-DLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~-~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      .|..|+ .++++++++++++++|.||.+||.   .+.+.|.++|..+ + ++.|+              .||     ++.
T Consensus        15 ~v~~l~-~~~f~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~--------------~vd-----~~~   74 (504)
T 2b5e_A           15 AVVKLA-TDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLA--------------QID-----CTE   74 (504)
T ss_dssp             SCEECC-TTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEE--------------EEE-----TTT
T ss_pred             CcEECC-HHHHHHHHhcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEE--------------EEE-----CCC
Confidence            456664 578999999999999999999984   5677999999998 4 48888              676     788


Q ss_pred             cHHHHHhcCCCC-CeEEEEecCCCC-cccccCCCCCHHHHHHHHhhcCCCceeeeCcchHHHhhccCC-cceEEEEEeCC
Q psy7942         104 NADILAEYSVDD-DTVAIFKKFDEG-RVNYEGPASDEAALRKFLSTQSLPLVVEFNHETAQKIFGGEI-KSHLLVFFSKA  180 (216)
Q Consensus       104 ~~~v~~~~~v~~-p~i~~~~~~de~-~~~y~G~~~~~~~l~~fi~~~~~P~v~~~~~~~~~~~~~~~~-~~~lllf~~~~  180 (216)
                      +++++++|++.+ |++++|+++... ...|.|.+ +.+.|.+||.....|.+.+++.  +..+.+..- ...+++|+...
T Consensus        75 ~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~~~G~~-~~~~l~~~l~~~~~~~v~~i~~--~~~~~~~~~~~~~~v~~f~~~  151 (504)
T 2b5e_A           75 NQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPR-TAEAIVQFMIKQSQPAVAVVAD--LPAYLANETFVTPVIVQSGKI  151 (504)
T ss_dssp             CHHHHHHTTCCSSSEEEEEETTCTTCEEECCSCC-SHHHHHHHHHHHTSCSEEECSC--HHHHHHHSCCSSCEEEEEESC
T ss_pred             CHHHHHhcCCCcCCEEEEEeCCccccceeecCCC-CHHHHHHHHHHhcCCcceeHHH--HHHHHhcCCCceEEEEEeCCC
Confidence            899999999997 999999974321 67899998 9999999999999999999988  666666542 13455666543


Q ss_pred             ccchhhhhHHHHHHHHhccCceEEEEcC
Q psy7942         181 AGHYESHFEPVQTVAKDFREKEEQDEDD  208 (216)
Q Consensus       181 ~~~~~~~~~~l~~vA~~~r~~~~f~~~d  208 (216)
                      .   ......++++|..+++++.|..++
T Consensus       152 ~---~~~~~~f~~~A~~~~~~~~F~~~~  176 (504)
T 2b5e_A          152 D---ADFNATFYSMANKHFNDYDFVSAE  176 (504)
T ss_dssp             C---HHHHHHHHHHHHHTTTTCEEEEEE
T ss_pred             C---chHHHHHHHHHHHhhcCcEEEEEH
Confidence            2   445679999999999999997764

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.32  E-value=1.3e-11  Score=100.58  Aligned_cols=128  Identities=20%  Similarity=0.387  Sum_probs=104.9

Q ss_pred             CCCcccCCCCCChHHHHHHHHhhhCCC------ceeecCHHHHHHhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhC-
Q psy7942           3 SCLPGERRGGRTAEDIVNWLLKKTGPP------AKEFTSVDEIKAFIADSKVVVAGLFKDAS---SELAKTFNEIASKV-   72 (216)
Q Consensus         3 ~g~~~~Y~G~Rta~~iv~~l~~~~~~~------v~~l~s~~~~~~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~-   72 (216)
                      +|..+.|.|.++++.|.+|+.+...+.      .....+.++++.++..+++++|.|+.+||   ....+.|.++|..+ 
T Consensus        98 ~g~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~  177 (241)
T 3idv_A           98 KGQAVDYEGSRTQEEIVAKVREVSQPDWTPPPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELS  177 (241)
T ss_dssp             TTEEEECCSCSCHHHHHHHHHHHHSTTCCCCCCSSEECCTTTHHHHHHHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHH
T ss_pred             CCCcccccCcccHHHHHHHHhhccCcccccccccceeccHHHHHHhhccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHh
Confidence            577788999999999999999998763      22334568899999989999999999997   45567888888876 


Q ss_pred             C---CceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942          73 D---DLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus        73 ~---~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      .   .+.|+              .+|     .+.+++++++|++.. |++++|++  +....|.|.+ +.+.|.+||..+
T Consensus       178 ~~~~~v~~~--------------~vd-----~~~~~~l~~~~~v~~~Pt~~~~~~--g~~~~~~g~~-~~~~l~~~l~~~  235 (241)
T 3idv_A          178 KRSPPIPLA--------------KVD-----ATAETDLAKRFDVSGYPTLKIFRK--GRPYDYNGPR-EKYGIVDYMIEQ  235 (241)
T ss_dssp             TSSSCCCEE--------------EEE-----TTTCHHHHHHTTCCSSSEEEEEET--TEEEECCSCC-SHHHHHHHHHHH
T ss_pred             ccCCcEEEE--------------EEE-----CCCCHHHHHHcCCcccCEEEEEEC--CeEEEecCCC-CHHHHHHHHHhh
Confidence            2   37787              455     667889999999986 99999995  4456699999 999999999988


Q ss_pred             CCCc
Q psy7942         149 SLPL  152 (216)
Q Consensus       149 ~~P~  152 (216)
                      ..|.
T Consensus       236 ~~~~  239 (241)
T 3idv_A          236 SGAA  239 (241)
T ss_dssp             TTCT
T ss_pred             hCCC
Confidence            7664

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.25  E-value=4.9e-11  Score=104.75  Aligned_cols=153  Identities=16%  Similarity=0.321  Sum_probs=109.7

Q ss_pred             ceeecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhCC-------CceEEecchhhHHHHhhhhcccccee
Q psy7942          30 AKEFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKVD-------DLVFDASSELAKTFNEIASKVDDLVF   99 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~-------~~~F~~~~~~~~~~~~~~~~~~~~~~   99 (216)
                      |..|+ .++++.++.++++++|.||++||.   .+.+.|.++|..+.       .+.|+              .||    
T Consensus         7 v~~l~-~~~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~--------------~Vd----   67 (382)
T 2r2j_A            7 ITSLD-TENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFA--------------RVD----   67 (382)
T ss_dssp             -CBCC-TTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEE--------------EEE----
T ss_pred             eEECC-HHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEE--------------EEE----
Confidence            55565 478888888899999999999984   45778999988761       37787              566    


Q ss_pred             eecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCCceeeeCc-chHHHhhccCCcceEEEEE
Q psy7942         100 VTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNH-ETAQKIFGGEIKSHLLVFF  177 (216)
Q Consensus       100 ~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~~~-~~~~~~~~~~~~~~lllf~  177 (216)
                       ++.+++++++|++.+ |++++|+++......|.|.. +.+.|.+||....-|.+.+++. +.+.. +... ...+++|+
T Consensus        68 -~~~~~~l~~~~~v~~~Pt~~~f~~G~~~~~~~~G~~-~~~~l~~~i~~~~~~~v~~l~~~~~l~~-l~~~-~~~~v~ff  143 (382)
T 2r2j_A           68 -CDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQR-SVKALADYIRQQKSDPIQEIRDLAEITT-LDRS-KRNIIGYF  143 (382)
T ss_dssp             -TTTCHHHHHHTTCCEESEEEEEETTEEEEEECCSCC-SHHHHHHHHHHHHSCCCEEC--------------CCEEEEEE
T ss_pred             -CCccHHHHHhcCCCcCCEEEEEeCCcEeeeeecCcc-hHHHHHHHHHHhccCCceecCCHHHHHH-hcCC-CCEEEEEE
Confidence             778899999999987 99999995322122599999 9999999999998898998864 45655 4443 34456666


Q ss_pred             eCCccchhhhhHHHHHHHHhccCceEEEEcC
Q psy7942         178 SKAAGHYESHFEPVQTVAKDFREKEEQDEDD  208 (216)
Q Consensus       178 ~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d  208 (216)
                      ....   ....+.+.++|+.+++++.|....
T Consensus       144 ~~~~---~~~~~~f~~~A~~~~~~~~F~~~~  171 (382)
T 2r2j_A          144 EQKD---SDNYRVFERVANILHDDCAFLSAF  171 (382)
T ss_dssp             SCSS---SHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CCCC---ChhHHHHHHHHHHhhccceEEEEe
Confidence            5332   334678999999999998875543

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.15  E-value=4.2e-10  Score=90.97  Aligned_cols=157  Identities=18%  Similarity=0.174  Sum_probs=116.8

Q ss_pred             cCHHHHHHhH-h--CCCeEEEEEecC-CCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecc--c
Q psy7942          34 TSVDEIKAFI-A--DSKVVVAGLFKD-ASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTST--N  104 (216)
Q Consensus        34 ~s~~~~~~~~-~--~~~v~~V~f~~~-~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~--~  104 (216)
                      .+.+++++++ +  .++++++.|+.+ ||.   ...+.+.++|...+.+.|+              .+|     +..  +
T Consensus         7 ~~~~~~~~~~~~~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~~~~v~~~--------------~vd-----~~~~~~   67 (226)
T 1a8l_A            7 ADKKVIKEEFFSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYE--------------IVD-----FDTPEG   67 (226)
T ss_dssp             HHHHHHHHHTGGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEE--------------EEE-----TTSHHH
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEEecCCCCchhHHHHHHHHHHHhhCCceEEE--------------EEe-----CCCccc
Confidence            3557777777 3  468888999998 874   5677888888766778888              455     556  7


Q ss_pred             HHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcC--CCceeeeCcchHHHhhccCCcceEEEEEeCCc
Q psy7942         105 ADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQS--LPLVVEFNHETAQKIFGGEIKSHLLVFFSKAA  181 (216)
Q Consensus       105 ~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~--~P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~  181 (216)
                      ++++++|++.. |++++|+...+....|.|.. ....+.+|+....  -.....++.+++..+...+.+..++.|..+++
T Consensus        68 ~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~G~~-~~~~l~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~v~F~a~wC  146 (226)
T 1a8l_A           68 KELAKRYRIDRAPATTITQDGKDFGVRYFGLP-AGHEFAAFLEDIVDVSREETNLMDETKQAIRNIDQDVRILVFVTPTC  146 (226)
T ss_dssp             HHHHHHTTCCSSSEEEEEETTBCCSEEEESCC-CTTHHHHHHHHHHHHHHTCCCCCHHHHHHHTTCCSCEEEEEEECSSC
T ss_pred             HHHHHHcCCCcCceEEEEcCCceeeEEEeccC-cHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            88999999986 99999986443346788987 7788888887632  12245677777776655442333667988888


Q ss_pred             cchhhhhHHHHHHHHhcc----CceEEEEcCCC
Q psy7942         182 GHYESHFEPVQTVAKDFR----EKEEQDEDDDQ  210 (216)
Q Consensus       182 ~~~~~~~~~l~~vA~~~r----~~~~f~~~d~~  210 (216)
                      +........+.++|+++.    +++.++.+|..
T Consensus       147 ~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~  179 (226)
T 1a8l_A          147 PYCPLAVRMAHKFAIENTKAGKGKILGDMVEAI  179 (226)
T ss_dssp             TTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGG
T ss_pred             CccHHHHHHHHHHHHhcccccCCcEEEEEEEcc
Confidence            888999999999999998    67888877654

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.04  E-value=1.6e-09  Score=78.35  Aligned_cols=97  Identities=19%  Similarity=0.288  Sum_probs=78.7

Q ss_pred             ceeecCHHHHHHhHhC--CCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeeccc
Q psy7942          30 AKEFTSVDEIKAFIAD--SKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTN  104 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~--~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~  104 (216)
                      |..|.|.+++++.+.+  +++++|.|+++||+   ...+.|.++|..+.++.|+              .||     ...+
T Consensus         2 V~~i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~--------------~vd-----~d~~   62 (105)
T 3zzx_A            2 VYQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFL--------------KVD-----VDEC   62 (105)
T ss_dssp             CEECCSHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEE--------------EEE-----TTTC
T ss_pred             eEEeCCHHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccCCeEEE--------------EEe-----cccC
Confidence            4578899999998864  68999999999984   5567889999988888888              566     6678


Q ss_pred             HHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         105 ADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       105 ~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ++++++|+|.+ ||+++|+++. ....+.| . +.+.|.+||.+|
T Consensus        63 ~~l~~~~~V~~~PT~~~~~~G~-~v~~~~G-~-~~~~l~~~i~k~  104 (105)
T 3zzx_A           63 EDIAQDNQIACMPTFLFMKNGQ-KLDSLSG-A-NYDKLLELVEKN  104 (105)
T ss_dssp             HHHHHHTTCCBSSEEEEEETTE-EEEEEES-C-CHHHHHHHHHHH
T ss_pred             HHHHHHcCCCeecEEEEEECCE-EEEEEeC-c-CHHHHHHHHHhc
Confidence            89999999986 9999998532 2345677 4 789999999876

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.02  E-value=5.2e-09  Score=84.87  Aligned_cols=154  Identities=16%  Similarity=0.146  Sum_probs=110.3

Q ss_pred             CHHHHHHhH--h-CCCeEEEEEec----CCCh---hHHHHHHHHHhhC---CCceEEecchhhHHHHhhhhccccceeee
Q psy7942          35 SVDEIKAFI--A-DSKVVVAGLFK----DASS---ELAKTFNEIASKV---DDLVFDASSELAKTFNEIASKVDDLVFVT  101 (216)
Q Consensus        35 s~~~~~~~~--~-~~~v~~V~f~~----~~~~---~~~~~f~~~A~~~---~~~~F~~~~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      ..+++++++  + .++++++.|+.    +||.   ...++|.++|..+   +.+.|+              .+|     +
T Consensus         7 ~~~~l~~~~~~~~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~--------------~vd-----~   67 (229)
T 2ywm_A            7 VRMQLKELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLD--------------IYS-----P   67 (229)
T ss_dssp             HHHHHHHHHHHHCCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEE--------------EEC-----T
T ss_pred             HHHHHHHHHHHhccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEE--------------Eec-----C
Confidence            346777777  3 34555555433    3443   4456777776554   467887              566     7


Q ss_pred             cccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcC--CCceeeeCcchHHHhhccCCcceEEEEEe
Q psy7942         102 STNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQS--LPLVVEFNHETAQKIFGGEIKSHLLVFFS  178 (216)
Q Consensus       102 t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~--~P~v~~~~~~~~~~~~~~~~~~~lllf~~  178 (216)
                      +.+++++++|+|.. |++++|+. ......|.|.. +...|.+|+....  -+.+..++.+++..+...+.+..++.|..
T Consensus        68 ~~~~~l~~~~~v~~~Ptl~~~~~-~~~~~~~~G~~-~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~F~a  145 (229)
T 2ywm_A           68 FTHKEETEKYGVDRVPTIVIEGD-KDYGIRYIGLP-AGLEFTTLINGIFHVSQRKPQLSEKTLELLQVVDIPIEIWVFVT  145 (229)
T ss_dssp             TTCHHHHHHTTCCBSSEEEEESS-SCCCEEEESCC-CTTHHHHHHHHHHHHHTTCCSCCHHHHHHHTTCCSCEEEEEEEC
T ss_pred             cccHHHHHHcCCCcCcEEEEECC-CcccceecCCc-cHHHHHHHHHHHHhccCCccCCCHHHHHHHHhcCCCeEEEEEEC
Confidence            78899999999997 99999984 34467799988 8888999987642  23467788888877765442232455888


Q ss_pred             CCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         179 KAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       179 ~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      .+.+........+.++|+++ +++.++.+|..
T Consensus       146 ~wC~~C~~~~~~~~~~~~~~-~~v~~~~vd~~  176 (229)
T 2ywm_A          146 TSCGYCPSAAVMAWDFALAN-DYITSKVIDAS  176 (229)
T ss_dssp             TTCTTHHHHHHHHHHHHHHC-TTEEEEEEEGG
T ss_pred             CCCcchHHHHHHHHHHHHHC-CCeEEEEEECC
Confidence            88888899999999999999 57888777643

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=98.92  E-value=1.3e-08  Score=75.05  Aligned_cols=101  Identities=14%  Similarity=0.255  Sum_probs=79.9

Q ss_pred             CCceeecCHHHHHHhHh-CCCeEEEEEecCCCh---hHHHHHHHHHhhC------CCceEEecchhhHHHHhhhhccccc
Q psy7942          28 PPAKEFTSVDEIKAFIA-DSKVVVAGLFKDASS---ELAKTFNEIASKV------DDLVFDASSELAKTFNEIASKVDDL   97 (216)
Q Consensus        28 ~~v~~l~s~~~~~~~~~-~~~v~~V~f~~~~~~---~~~~~f~~~A~~~------~~~~F~~~~~~~~~~~~~~~~~~~~   97 (216)
                      ..+..|+ .++++..+. +++.++|.|+.+||.   ...+.|.++|..+      +.+.|+              .||  
T Consensus        15 ~~v~~l~-~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~--------------~vd--   77 (127)
T 3h79_A           15 SRVVELT-DETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAA--------------RID--   77 (127)
T ss_dssp             CCCEECC-TTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEE--------------EEE--
T ss_pred             CceEECC-hhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEE--------------EEE--
Confidence            3456665 578888875 589999999999984   5677899988653      457787              566  


Q ss_pred             eeeecccHHHHHhcCCCC-CeEEEEecCCCC-cccccCCCCCHHHHHHHHhhcC
Q psy7942          98 VFVTSTNADILAEYSVDD-DTVAIFKKFDEG-RVNYEGPASDEAALRKFLSTQS  149 (216)
Q Consensus        98 ~~~~t~~~~v~~~~~v~~-p~i~~~~~~de~-~~~y~G~~~~~~~l~~fi~~~~  149 (216)
                         +..+++++++|++.. |++++|++.... ...|.|.. +.+.|.+||.+++
T Consensus        78 ---~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~~~G~~-~~~~l~~~i~~~s  127 (127)
T 3h79_A           78 ---GEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQR-YLSLVDSFVFQNT  127 (127)
T ss_dssp             ---TTTCHHHHHHTTCCSSSEEEEECSSCSSSCEECCSCC-CHHHHHHHHHHHC
T ss_pred             ---ccccHhHHHhcCCccCCEEEEEeCCCCCCceEecCCc-cHHHHHHHHHhcC
Confidence               777889999999986 999999975442 36899999 9999999998753

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=98.84  E-value=2.1e-08  Score=83.46  Aligned_cols=98  Identities=15%  Similarity=0.219  Sum_probs=82.8

Q ss_pred             CceeecCHHHHHHhHhCCCeEEEEEe--cCCChhHHHHHHHHHhhC----CCceEEecchhhHHHHhhhhccccceeeec
Q psy7942          29 PAKEFTSVDEIKAFIADSKVVVAGLF--KDASSELAKTFNEIASKV----DDLVFDASSELAKTFNEIASKVDDLVFVTS  102 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~~~~~v~~V~f~--~~~~~~~~~~f~~~A~~~----~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t  102 (216)
                      .+..|+ .+++++++.+++.++|-||  .+||+ +.+.|.++|..+    +++.|+              .||     ++
T Consensus        17 ~v~~Lt-~~nF~~vi~~~~~vlV~Fy~~ApWCg-l~P~~e~lA~~~~~~~~~v~~a--------------kVD-----~d   75 (248)
T 2c0g_A           17 GCVDLD-ELSFEKTVERFPYSVVKFDIASPYGE-KHEAFTAFSKSAHKATKDLLIA--------------TVG-----VK   75 (248)
T ss_dssp             TCEECC-TTTHHHHHTTSSEEEEEEEESSCCSH-HHHHHHHHHHHHHHHCSSEEEE--------------EEE-----EC
T ss_pred             CcEECC-HHHHHHHHhcCCCEEEEEECCCCCCc-cHHHHHHHHHHHhccCCCeEEE--------------EEE-----CC
Confidence            456665 4788888888899999999  99998 999999999886    368888              677     77


Q ss_pred             c-----cHHHHHhcCCC--C-CeEEEEecCC-CCcccc--cCCCCCHHHHHHHHhhcC
Q psy7942         103 T-----NADILAEYSVD--D-DTVAIFKKFD-EGRVNY--EGPASDEAALRKFLSTQS  149 (216)
Q Consensus       103 ~-----~~~v~~~~~v~--~-p~i~~~~~~d-e~~~~y--~G~~~~~~~l~~fi~~~~  149 (216)
                      .     +++++.+|+|.  . ||+++|+ +. .....|  .|.. +.+.|.+||..+.
T Consensus        76 ~~g~~~n~~la~~~~V~~~~~PTl~~F~-G~~~~~~~y~~~G~~-~~~~L~~fi~~~~  131 (248)
T 2c0g_A           76 DYGELENKALGDRYKVDDKNFPSIFLFK-GNADEYVQLPSHVDV-TLDNLKAFVSANT  131 (248)
T ss_dssp             SSTTCTTHHHHHHTTCCTTSCCEEEEES-SSSSSEEECCTTSCC-CHHHHHHHHHHHS
T ss_pred             cccccccHHHHHHhCCCcCCCCeEEEEe-CCcCcceeecccCCC-CHHHHHHHHHHhh
Confidence            6     78999999999  5 9999999 55 346778  8998 9999999999874

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=98.83  E-value=3.1e-08  Score=82.12  Aligned_cols=99  Identities=24%  Similarity=0.365  Sum_probs=82.3

Q ss_pred             CceeecCHHHHHHhHhCCCeEEEEEec--CCChhHHHHHHHHHhhC---CCceEEecchhhHHHHhhhhccccceeeec-
Q psy7942          29 PAKEFTSVDEIKAFIADSKVVVAGLFK--DASSELAKTFNEIASKV---DDLVFDASSELAKTFNEIASKVDDLVFVTS-  102 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~~~~~v~~V~f~~--~~~~~~~~~f~~~A~~~---~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t-  102 (216)
                      .+..|+ .+++++++..++.++|.||.  +||+ ..+.|.++|..+   +++.|+              .||     +. 
T Consensus         6 ~v~~Lt-~~nF~~~i~~~~~vlV~FyA~~pWCg-l~P~~e~lA~~~~~~~~v~~a--------------kVD-----vd~   64 (240)
T 2qc7_A            6 GALPLD-TVTFYKVIPKSKFVLVKFDTQYPYGE-KQDEFKRLAENSASSDDLLVA--------------EVG-----ISD   64 (240)
T ss_dssp             TCEECC-TTHHHHHGGGCSEEEEEECCSSCCSH-HHHHHHHHHHHHTTCTTEEEE--------------EEC-----CCC
T ss_pred             CceECC-HHHHHHHHcCCCCEEEEEeCCCCCCc-chHHHHHHHHHhcCCCCeEEE--------------EEe-----CCc
Confidence            455665 47899999889999999999  9999 999999999887   468888              454     32 


Q ss_pred             ----ccHHHHHhcCCC--C-CeEEEEecCC-CCcccccCCCCCHHHHHHHHhhcC
Q psy7942         103 ----TNADILAEYSVD--D-DTVAIFKKFD-EGRVNYEGPASDEAALRKFLSTQS  149 (216)
Q Consensus       103 ----~~~~v~~~~~v~--~-p~i~~~~~~d-e~~~~y~G~~~~~~~l~~fi~~~~  149 (216)
                          .+++++++|+|.  . |++++|+++. .....|.|.. +.+.|.+||..+.
T Consensus        65 ~g~~~~~~l~~~~~V~~~~~PTl~~f~~G~~~~~~~y~G~~-~~~~L~~fi~~~~  118 (240)
T 2qc7_A           65 YGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAV-KVGAIQRWLKGQG  118 (240)
T ss_dssp             SSSCCSHHHHHHTTCCGGGCSEEEEEETTCSSCCEECCSCS-CHHHHHHHHHHTT
T ss_pred             ccchhhHHHHHHcCCCCCCCCEEEEEeCCCcCcceeecCCC-CHHHHHHHHHHhc
Confidence                378999999999  5 9999999755 3467899998 9999999999884

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=98.82  E-value=5.6e-09  Score=80.20  Aligned_cols=66  Identities=39%  Similarity=0.680  Sum_probs=50.6

Q ss_pred             HHhhcCCCceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCC
Q psy7942         144 FLSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDD  209 (216)
Q Consensus       144 fi~~~~~P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~  209 (216)
                      -++.+++|+|+++|.+|+..+++++++.++++|.+.+.++.+.+++.++++|++||++++|+++|.
T Consensus         7 ~~~~~~~PLV~e~t~en~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkgki~Fv~vd~   72 (147)
T 3bj5_A            7 HMKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFIDS   72 (147)
T ss_dssp             --------CEEECCTTTHHHHHSSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTTTCEEEEECT
T ss_pred             chhhccCCeeEEeccccHHHHhcCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcCCceEEEEEec
Confidence            367899999999999999999999876655557665555678899999999999999999999997

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=98.74  E-value=1.6e-08  Score=72.04  Aligned_cols=97  Identities=12%  Similarity=0.166  Sum_probs=65.0

Q ss_pred             eeecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecccHHH
Q psy7942          31 KEFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADI  107 (216)
Q Consensus        31 ~~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v  107 (216)
                      ..+++.+++++.++++++++|.|+++||.   ...+.+.+++..++++.|.              .+|     ...++++
T Consensus         3 ~~i~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~--------------~vd-----~~~~~~l   63 (105)
T 4euy_A            3 NTFKTIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYNYVEKI--------------EIL-----LQDMQEI   63 (105)
T ss_dssp             -------CCSSSTTCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCTTEEEE--------------EEE-----ECCC---
T ss_pred             cccCCHHHHHHHHhcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcCCceEE--------------EEE-----CCCCHHH
Confidence            45677788888888899999999999984   5567888999888778887              455     6677889


Q ss_pred             HHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         108 LAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       108 ~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      +++|++.. |++++|+++ +....+.|.. +.+.|.+||...
T Consensus        64 ~~~~~v~~~Pt~~~~~~G-~~~~~~~g~~-~~~~l~~~l~~~  103 (105)
T 4euy_A           64 AGRYAVFTGPTVLLFYNG-KEILRESRFI-SLENLERTIQLF  103 (105)
T ss_dssp             ------CCCCEEEEEETT-EEEEEEESSC-CHHHHHHHHHTT
T ss_pred             HHhcCCCCCCEEEEEeCC-eEEEEEeCCc-CHHHHHHHHHHh
Confidence            99999986 999999842 2234567888 999999999864

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=98.73  E-value=2.3e-07  Score=75.55  Aligned_cols=122  Identities=11%  Similarity=0.193  Sum_probs=89.7

Q ss_pred             CcccCCC----CCChHHHHHHHHhhhCCCceeecCHHHHHHhHhCC-CeEEEEEecCCC---hhHHHHHHHHHhhC-CCc
Q psy7942           5 LPGERRG----GRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADS-KVVVAGLFKDAS---SELAKTFNEIASKV-DDL   75 (216)
Q Consensus         5 ~~~~Y~G----~Rta~~iv~~l~~~~~~~v~~l~s~~~~~~~~~~~-~v~~V~f~~~~~---~~~~~~f~~~A~~~-~~~   75 (216)
                      .+.+|.|    +|++++|++|++....|.+.+++ .+++..+.++. +..++.|...++   ....+.|.++|+.+ +.+
T Consensus        86 ~~~~~~~~~~g~~~~~~l~~fi~~~~~plv~e~t-~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~i  164 (227)
T 4f9z_D           86 EQLNLEDEDIESIDATKLSRFIEINSLHMVTEYN-PVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQGKI  164 (227)
T ss_dssp             EEEEECHHHHHTCCHHHHHHHHHHHCCCSEEECC-HHHHHHHHHSSCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTTTC
T ss_pred             ccccccccccCCCCHHHHHHHHHHhCCCceeecC-cccHHHHhccCCceEEEEEEcCCcchHHHHHHHHHHHHHHhhCCE
Confidence            3567884    89999999999999999999996 67788887765 445555555443   34568999999999 678


Q ss_pred             eEEecchhhHHHHhhhhccccceeeec--ccHHHHHhcCCC---CCeEEEEecCCCCcccc-cCCCCCHHHHHHHHhh
Q psy7942          76 VFDASSELAKTFNEIASKVDDLVFVTS--TNADILAEYSVD---DDTVAIFKKFDEGRVNY-EGPASDEAALRKFLST  147 (216)
Q Consensus        76 ~F~~~~~~~~~~~~~~~~~~~~~~~~t--~~~~v~~~~~v~---~p~i~~~~~~de~~~~y-~G~~~~~~~l~~fi~~  147 (216)
                      .|++              +|     ..  ..+.+++.+|++   .|+|+++...+.....+ .|.+ +.+.|.+|+..
T Consensus       165 ~F~~--------------vd-----~~~~~~~~~l~~fgl~~~~~P~~~i~~~~~~~ky~~~~~~~-t~~~i~~Fv~~  222 (227)
T 4f9z_D          165 LFIL--------------VD-----SGMKENGKVISFFKLKESQLPALAIYQTLDDEWDTLPTAEV-SVEHVQNFCDG  222 (227)
T ss_dssp             EEEE--------------EE-----TTSGGGHHHHHHTTCCGGGCSEEEEEESSSCCEEEETTCCC-CHHHHHHHHHH
T ss_pred             EEEE--------------eC-----CccHhHHHHHHHcCCCcccCCEEEEEECCCCccccCCcCCC-CHHHHHHHHHH
Confidence            8883              22     21  234578889987   39999998643323334 3788 99999999975

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=98.72  E-value=1e-07  Score=77.14  Aligned_cols=119  Identities=13%  Similarity=0.132  Sum_probs=91.8

Q ss_pred             CcccCCCCCChHHHHHHHHhhhC--CCceeecCHHHHHHhHhCC-CeEEEEEecCCCh---hHHHHHHHHHhhCCCceEE
Q psy7942           5 LPGERRGGRTAEDIVNWLLKKTG--PPAKEFTSVDEIKAFIADS-KVVVAGLFKDASS---ELAKTFNEIASKVDDLVFD   78 (216)
Q Consensus         5 ~~~~Y~G~Rta~~iv~~l~~~~~--~~v~~l~s~~~~~~~~~~~-~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~   78 (216)
                      .+..|.|.|+.++|.+|+.+...  ..+..+ +.+.++.++..+ +++++.|+.+||.   ...+.+.+++..++++.|+
T Consensus        93 ~~~~~~G~~~~~~l~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~~v~~~  171 (229)
T 2ywm_A           93 YGIRYIGLPAGLEFTTLINGIFHVSQRKPQL-SEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALANDYITSK  171 (229)
T ss_dssp             CCEEEESCCCTTHHHHHHHHHHHHHTTCCSC-CHHHHHHHTTCCSCEEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEE
T ss_pred             ccceecCCccHHHHHHHHHHHHhccCCccCC-CHHHHHHHHhcCCCeEEEEEECCCCcchHHHHHHHHHHHHHCCCeEEE
Confidence            45789999999999999998753  334455 457788877654 4558889999984   5667888888888778887


Q ss_pred             ecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942          79 ASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                                    .+|     ...+++++++|++.. |++++  +  +....|.|.. +.+.|.+||...
T Consensus       172 --------------~vd-----~~~~~~l~~~~~v~~~Pt~~~--~--G~~~~~~G~~-~~~~l~~~l~~~  218 (229)
T 2ywm_A          172 --------------VID-----ASENQDLAEQFQVVGVPKIVI--N--KGVAEFVGAQ-PENAFLGYIMAV  218 (229)
T ss_dssp             --------------EEE-----GGGCHHHHHHTTCCSSSEEEE--G--GGTEEEESCC-CHHHHHHHHHHH
T ss_pred             --------------EEE-----CCCCHHHHHHcCCcccCEEEE--C--CEEEEeeCCC-CHHHHHHHHHHH
Confidence                          454     566789999999986 99998  3  2244589998 899999999764

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=98.70  E-value=2e-07  Score=66.29  Aligned_cols=98  Identities=11%  Similarity=0.280  Sum_probs=77.8

Q ss_pred             CceeecCHHHHHHhH-hCCCeEEEEEecCCCh---hHHHHHHHHHhhCC-CceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          29 PAKEFTSVDEIKAFI-ADSKVVVAGLFKDASS---ELAKTFNEIASKVD-DLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~-~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~-~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      ++..+ +.+++++.+ ++++.++|.|+.+||.   ...+.+.+++..++ .+.|+              .++     ...
T Consensus         5 ~v~~l-~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~--------------~vd-----~~~   64 (111)
T 3gnj_A            5 SLEKL-DTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFY--------------YVD-----VEE   64 (111)
T ss_dssp             CSEEC-CHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEE--------------EEE-----TTT
T ss_pred             cceec-CHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEE--------------EEE-----CCc
Confidence            45566 678999888 7889999999999984   55668888898884 68887              455     667


Q ss_pred             cHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         104 NADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       104 ~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      +++++++|++.. |++++|+++ +....|.|.. +.+.|.+||...
T Consensus        65 ~~~l~~~~~v~~~Pt~~~~~~g-~~~~~~~g~~-~~~~l~~~l~~~  108 (111)
T 3gnj_A           65 EKTLFQRFSLKGVPQILYFKDG-EYKGKMAGDV-EDDEVEQMIADV  108 (111)
T ss_dssp             CHHHHHHTTCCSSCEEEEEETT-EEEEEEESSC-CHHHHHHHHHHH
T ss_pred             ChhHHHhcCCCcCCEEEEEECC-EEEEEEeccC-CHHHHHHHHHHH
Confidence            888999999986 999999742 2234678988 999999999764

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=98.70  E-value=1.6e-07  Score=69.45  Aligned_cols=97  Identities=21%  Similarity=0.256  Sum_probs=78.0

Q ss_pred             ceeecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecccHH
Q psy7942          30 AKEFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNAD  106 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~  106 (216)
                      +..|++.+++++.++.+++++|.|+.+||.   ...+.|.+++..++++.|.              .+|     ...+++
T Consensus        21 v~~l~~~~~f~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~--------------~vd-----~d~~~~   81 (125)
T 1r26_A           21 VVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFA--------------KVD-----ADNNSE   81 (125)
T ss_dssp             CEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEE--------------EEE-----TTTCHH
T ss_pred             eEECCCHHHHHHHHccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEE--------------EEE-----CCCCHH
Confidence            678888899999998899999999999984   4567888899888778887              455     566788


Q ss_pred             HHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         107 ILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       107 v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ++++|++.. |++++|+++ .....+.| . +.+.|.+||...
T Consensus        82 l~~~~~v~~~Pt~~i~~~G-~~~~~~~G-~-~~~~l~~~l~~~  121 (125)
T 1r26_A           82 IVSKCRVLQLPTFIIARSG-KMLGHVIG-A-NPGMLRQKLRDI  121 (125)
T ss_dssp             HHHHTTCCSSSEEEEEETT-EEEEEEES-S-CHHHHHHHHHHH
T ss_pred             HHHHcCCCcccEEEEEeCC-eEEEEEeC-C-CHHHHHHHHHHH
Confidence            999999986 999999742 22345778 6 788999998753

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=98.69  E-value=1.8e-07  Score=71.42  Aligned_cols=101  Identities=15%  Similarity=0.303  Sum_probs=79.4

Q ss_pred             CCCceeecCHHHHHHhHhC--CCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeee
Q psy7942          27 GPPAKEFTSVDEIKAFIAD--SKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVT  101 (216)
Q Consensus        27 ~~~v~~l~s~~~~~~~~~~--~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      ...+..+++.++++.++++  +++++|.|+.+||.   ...+.|.+++..++++.|.              .||     .
T Consensus        11 ~~~v~~l~~~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~--------------~vd-----~   71 (153)
T 2wz9_A           11 VAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFV--------------KLE-----A   71 (153)
T ss_dssp             -CCSEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEE--------------EEE-----T
T ss_pred             cCCeEEcCCHHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcCCeEEE--------------EEE-----C
Confidence            3457788889999999987  89999999999984   5567888889888788887              455     6


Q ss_pred             cccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcC
Q psy7942         102 STNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQS  149 (216)
Q Consensus       102 t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~  149 (216)
                      ..+++++++|++.. |++++|++ .+....+.| . +.+.|.+||....
T Consensus        72 ~~~~~l~~~~~v~~~Pt~~~~~~-G~~~~~~~G-~-~~~~l~~~i~~~l  117 (153)
T 2wz9_A           72 EGVPEVSEKYEISSVPTFLFFKN-SQKIDRLDG-A-HAPELTKKVQRHA  117 (153)
T ss_dssp             TTSHHHHHHTTCCSSSEEEEEET-TEEEEEEES-S-CHHHHHHHHHHHS
T ss_pred             CCCHHHHHHcCCCCCCEEEEEEC-CEEEEEEeC-C-CHHHHHHHHHHHh
Confidence            66788999999986 99999993 222334567 5 6788999998764

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=98.69  E-value=2.4e-07  Score=64.94  Aligned_cols=97  Identities=22%  Similarity=0.427  Sum_probs=75.7

Q ss_pred             ceeecCHHHHHHhHh--CCCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeeccc
Q psy7942          30 AKEFTSVDEIKAFIA--DSKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTN  104 (216)
Q Consensus        30 v~~l~s~~~~~~~~~--~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~  104 (216)
                      +..+++.+++++.++  .+++++|.|+.+||.   ...+.+.+++..++++.|.              .++     ...+
T Consensus         1 v~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~--------------~v~-----~~~~   61 (104)
T 2vim_A            1 MRVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFA--------------KVD-----VDQN   61 (104)
T ss_dssp             CEECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEE--------------EEE-----TTTC
T ss_pred             CeecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCCCCEEE--------------EEe-----ccCC
Confidence            356888899999888  688999999999984   4567888888888778887              344     5567


Q ss_pred             HHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         105 ADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       105 ~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ++++++|++.. |++++|+++ .....+.| . +.+.|.+||...
T Consensus        62 ~~~~~~~~v~~~Pt~~~~~~g-~~~~~~~G-~-~~~~l~~~l~~~  103 (104)
T 2vim_A           62 EEAAAKYSVTAMPTFVFIKDG-KEVDRFSG-A-NETKLRETITRH  103 (104)
T ss_dssp             HHHHHHTTCCSSSEEEEEETT-EEEEEEES-S-CHHHHHHHHHHH
T ss_pred             HHHHHHcCCccccEEEEEeCC-cEEEEEeC-C-CHHHHHHHHHhh
Confidence            78999999986 999999842 22345678 6 888999999753

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=98.69  E-value=1.5e-07  Score=66.93  Aligned_cols=98  Identities=19%  Similarity=0.276  Sum_probs=75.6

Q ss_pred             CceeecCHHHHHHhH--hCCCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          29 PAKEFTSVDEIKAFI--ADSKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~--~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      .+..+.+.+++++.+  .++++++|.|+.+||.   ...+.+.+++..++++.|.              .+|     ...
T Consensus         2 ~v~~i~~~~~~~~~~~~~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~--------------~vd-----~~~   62 (107)
T 1gh2_A            2 GVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFL--------------EVD-----VHQ   62 (107)
T ss_dssp             CEEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTTSEEE--------------EEE-----TTT
T ss_pred             ceEEecCHHHHHHHHHhCCCCEEEEEEECCCChhhHHHHHHHHHHHHHCCCcEEE--------------EEE-----Ccc
Confidence            356788889999988  4688999999999984   5567888899888778887              454     556


Q ss_pred             cHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         104 NADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       104 ~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      +++++++|++.. |++++|+++ +....+.|.  ..+.|.+||...
T Consensus        63 ~~~~~~~~~v~~~Pt~~~~~~G-~~~~~~~G~--~~~~l~~~l~~~  105 (107)
T 1gh2_A           63 CQGTAATNNISATPTFQFFRNK-VRIDQYQGA--DAVGLEEKIKQH  105 (107)
T ss_dssp             SHHHHHHTTCCSSSEEEEEETT-EEEEEEESS--CHHHHHHHHHHH
T ss_pred             CHHHHHhcCCCcccEEEEEECC-eEEEEEeCC--CHHHHHHHHHHh
Confidence            788999999986 999999753 223457784  445699998753

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=98.68  E-value=2.4e-07  Score=65.23  Aligned_cols=97  Identities=20%  Similarity=0.304  Sum_probs=76.8

Q ss_pred             ceeecCHHHHHHhHh--CCCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeeccc
Q psy7942          30 AKEFTSVDEIKAFIA--DSKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTN  104 (216)
Q Consensus        30 v~~l~s~~~~~~~~~--~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~  104 (216)
                      +..+++.+++++.++  ++++++|.|+.+||.   ...+.+.+++.+++++.|.              .+|     ...+
T Consensus         2 v~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~--------------~vd-----~~~~   62 (105)
T 3m9j_A            2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL--------------EVD-----VDDC   62 (105)
T ss_dssp             CEECCSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTSEEE--------------EEE-----TTTC
T ss_pred             eEEcCCHHHHHHHHHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccCeEEE--------------EEE-----hhhh
Confidence            457889999999998  789999999999984   5567888889988778887              455     5667


Q ss_pred             HHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         105 ADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       105 ~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ++++++|++.. |++++|+++ +....+.|.  +.+.|.+||...
T Consensus        63 ~~~~~~~~v~~~Pt~~~~~~g-~~~~~~~g~--~~~~l~~~l~~~  104 (105)
T 3m9j_A           63 QDVASESEVKSMPTFQFFKKG-QKVGEFSGA--NKEKLEATINEL  104 (105)
T ss_dssp             HHHHHHTTCCBSSEEEEEETT-EEEEEEESS--CHHHHHHHHHHH
T ss_pred             HHHHHHcCCCcCcEEEEEECC-eEEEEEeCC--CHHHHHHHHHHh
Confidence            88999999986 999999752 223346676  788999998753

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=98.67  E-value=3.1e-07  Score=64.65  Aligned_cols=97  Identities=20%  Similarity=0.339  Sum_probs=76.3

Q ss_pred             ceeecCHHHHHHhHh--CCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          30 AKEFTSVDEIKAFIA--DSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        30 v~~l~s~~~~~~~~~--~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      +..+++.+++++.++  ++++++|.|+.+||.   ...+.|.+++..+ +++.|.              .++     ...
T Consensus         2 v~~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~--------------~v~-----~~~   62 (106)
T 1xwb_A            2 VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVL--------------KVD-----VDE   62 (106)
T ss_dssp             EEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEE--------------EEE-----TTT
T ss_pred             ceecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEE--------------EEe-----ccc
Confidence            457888889998887  788999999999984   4567888889888 678887              444     556


Q ss_pred             cHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         104 NADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       104 ~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      +++++++|++.. |++++|+++ +....+.| . +.+.|.+||...
T Consensus        63 ~~~~~~~~~v~~~Pt~~~~~~G-~~~~~~~g-~-~~~~l~~~i~~~  105 (106)
T 1xwb_A           63 CEDIAMEYNISSMPTFVFLKNG-VKVEEFAG-A-NAKRLEDVIKAN  105 (106)
T ss_dssp             CHHHHHHTTCCSSSEEEEEETT-EEEEEEES-C-CHHHHHHHHHHT
T ss_pred             hHHHHHHcCCCcccEEEEEcCC-cEEEEEcC-C-CHHHHHHHHHHh
Confidence            788999999986 999999752 22345778 6 788899999764

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=98.65  E-value=2.4e-07  Score=76.42  Aligned_cols=153  Identities=11%  Similarity=0.118  Sum_probs=105.9

Q ss_pred             ecCHHHHHHhHhC-CCeEEEEEecCC--C---hhHHHHHHHHHhhCCC------ceEEecchhhHHHHhhhhccccceee
Q psy7942          33 FTSVDEIKAFIAD-SKVVVAGLFKDA--S---SELAKTFNEIASKVDD------LVFDASSELAKTFNEIASKVDDLVFV  100 (216)
Q Consensus        33 l~s~~~~~~~~~~-~~v~~V~f~~~~--~---~~~~~~f~~~A~~~~~------~~F~~~~~~~~~~~~~~~~~~~~~~~  100 (216)
                      .++.++++.+++. ...++|.||.+|  |   ..+.+.+.++|+.++.      +.|.              .+|     
T Consensus        11 ~~~~~ql~~~~~~~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~--------------~vd-----   71 (243)
T 2hls_A           11 EDFRRELRETLAEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLN--------------VYY-----   71 (243)
T ss_dssp             HHHHHHHHHHHTTCCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEE--------------EEE-----
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEE--------------Eec-----
Confidence            3456788888865 344555566666  4   3456677888877654      7777              344     


Q ss_pred             ecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc----CCCceeeeCcchHHHhhccCCcceEEE
Q psy7942         101 TSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ----SLPLVVEFNHETAQKIFGGEIKSHLLV  175 (216)
Q Consensus       101 ~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~----~~P~v~~~~~~~~~~~~~~~~~~~lll  175 (216)
                      ...+++++++|+++. |++++| +  + ...|.|.. ....+..|+...    ..+  ..++.++...+-+...+..++.
T Consensus        72 ~d~~~~~~~~~gv~~~Pt~~i~-~--g-~~~~~G~~-~~~~l~~fv~~~l~~~~~~--~~l~~~~~~~~~~~~~~~~vv~  144 (243)
T 2hls_A           72 RESDSDKFSEFKVERVPTVAFL-G--G-EVRWTGIP-AGEEIRALVEVIMRLSEDE--SGLEDATKEALKSLKGRVHIET  144 (243)
T ss_dssp             TTTTHHHHHHTTCCSSSEEEET-T--T-TEEEESCC-CTTHHHHHHHHHHHHHTTC--CCCCHHHHHHHHHCCSCEEEEE
T ss_pred             CCcCHHHHHhcCCCcCCEEEEE-C--C-ceeEcCCC-cHHHHHHHHHHHHhccCCC--CCCCHHHHHHHHHcCCCcEEEE
Confidence            556788999999987 999998 3  3 67788876 667788887653    222  2345555554433322344666


Q ss_pred             EEeCCccchhhhhHHHHHHHHhcc----CceEEEEcCCCC
Q psy7942         176 FFSKAAGHYESHFEPVQTVAKDFR----EKEEQDEDDDQP  211 (216)
Q Consensus       176 f~~~~~~~~~~~~~~l~~vA~~~r----~~~~f~~~d~~~  211 (216)
                      |+.++++.+......+.++|.++.    +++.+..+|...
T Consensus       145 F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~  184 (243)
T 2hls_A          145 IITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYE  184 (243)
T ss_dssp             EECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTT
T ss_pred             EECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECcc
Confidence            888899999999999999999994    578888887653

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=98.64  E-value=4e-07  Score=66.10  Aligned_cols=99  Identities=19%  Similarity=0.299  Sum_probs=77.3

Q ss_pred             CCceeecCHHHHHHhHh--CCCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeec
Q psy7942          28 PPAKEFTSVDEIKAFIA--DSKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTS  102 (216)
Q Consensus        28 ~~v~~l~s~~~~~~~~~--~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t  102 (216)
                      ++.....+.++++++++  .+++++|.|+.+||.   ...+.+.+++.++.++.|.              .||     ..
T Consensus        11 ~~~~~~~t~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~--------------~vd-----~d   71 (116)
T 3qfa_C           11 GSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFL--------------EVD-----VD   71 (116)
T ss_dssp             -CCBCCCCHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTTSEEE--------------EEE-----TT
T ss_pred             CcccCCCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEE--------------EEE-----CC
Confidence            34456678899999998  799999999999984   5567888899888668887              455     66


Q ss_pred             ccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         103 TNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       103 ~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      .+++++++|++.. |++++|+++ +....+.|.  +.+.|.+||...
T Consensus        72 ~~~~l~~~~~v~~~Pt~~~~~~G-~~~~~~~G~--~~~~l~~~l~~~  115 (116)
T 3qfa_C           72 DCQDVASECEVKSMPTFQFFKKG-QKVGEFSGA--NKEKLEATINEL  115 (116)
T ss_dssp             TTHHHHHHTTCCSSSEEEEESSS-SEEEEEESC--CHHHHHHHHHHH
T ss_pred             CCHHHHHHcCCccccEEEEEeCC-eEEEEEcCC--CHHHHHHHHHHh
Confidence            7788999999986 999999642 223446676  788999998753

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.62  E-value=2e-07  Score=69.40  Aligned_cols=101  Identities=21%  Similarity=0.377  Sum_probs=79.5

Q ss_pred             ceeecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-C---CceEEecchhhHHHHhhhhccccceeeec
Q psy7942          30 AKEFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKV-D---DLVFDASSELAKTFNEIASKVDDLVFVTS  102 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~---~~~F~~~~~~~~~~~~~~~~~~~~~~~~t  102 (216)
                      +..| +.++++..+..+++++|.|+.+||.   ...+.|.+++..+ +   .+.|+              .+|     ..
T Consensus        19 v~~l-~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~--------------~vd-----~~   78 (140)
T 2dj1_A           19 VWVL-NDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVA--------------KID-----AT   78 (140)
T ss_dssp             EEEC-CTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEE--------------EEC-----TT
T ss_pred             CEEc-ChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEE--------------EEe-----Cc
Confidence            5566 4578888998899999999999984   4567888888876 3   37777              455     66


Q ss_pred             ccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCCce
Q psy7942         103 TNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLV  153 (216)
Q Consensus       103 ~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P~v  153 (216)
                      .+.+++++|++.. |++++|++  +....|.|.. +.+.|.+||....-+..
T Consensus        79 ~~~~~~~~~~v~~~Pt~~~~~~--G~~~~~~g~~-~~~~l~~~l~~~~~~~~  127 (140)
T 2dj1_A           79 SASMLASKFDVSGYPTIKILKK--GQAVDYDGSR-TQEEIVAKVREVSQPDW  127 (140)
T ss_dssp             TCHHHHHHTTCCSSSEEEEEET--TEEEECCSCC-CHHHHHHHHHHHHSSSC
T ss_pred             ccHHHHHHCCCCccCeEEEEEC--CcEEEcCCCC-CHHHHHHHHHHhcCCCC
Confidence            6788999999986 99999975  3366789998 99999999998754433

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=98.61  E-value=3.6e-07  Score=64.83  Aligned_cols=97  Identities=22%  Similarity=0.331  Sum_probs=75.4

Q ss_pred             CceeecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC----CCceEEecchhhHHHHhhhhccccceeee
Q psy7942          29 PAKEFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKV----DDLVFDASSELAKTFNEIASKVDDLVFVT  101 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~----~~~~F~~~~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      .+..++ .+++++.+. +++++|.|+.+||.   ...+.|.+++..+    ..+.|+              .+|     .
T Consensus         6 ~v~~l~-~~~~~~~~~-~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~--------------~vd-----~   64 (111)
T 3uvt_A            6 TVLALT-ENNFDDTIA-EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIA--------------EVD-----C   64 (111)
T ss_dssp             CSEECC-TTTHHHHHH-SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEE--------------EEE-----T
T ss_pred             cceEcC-hhhHHHHhc-CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEE--------------EEe-----c
Confidence            455664 578888887 77899999999984   5567888888876    356776              454     6


Q ss_pred             cccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         102 STNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       102 t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ..+++++++|++.. |++++|++. +....|.|.. +.+.|.+||..+
T Consensus        65 ~~~~~l~~~~~v~~~Pt~~~~~~g-~~~~~~~g~~-~~~~l~~~l~~~  110 (111)
T 3uvt_A           65 TAERNICSKYSVRGYPTLLLFRGG-KKVSEHSGGR-DLDSLHRFVLSQ  110 (111)
T ss_dssp             TTCHHHHHHTTCCSSSEEEEEETT-EEEEEECSCC-SHHHHHHHHHHH
T ss_pred             cccHhHHHhcCCCcccEEEEEeCC-cEEEeccCCc-CHHHHHHHHHhc
Confidence            67788999999986 999999753 2345688998 999999999875

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=98.61  E-value=1.7e-07  Score=75.42  Aligned_cols=121  Identities=13%  Similarity=0.116  Sum_probs=91.3

Q ss_pred             cccCCCCCChHHHHHHHHhhhC--CCceeecCHHHHHHhHhCCCeE-EEEEecCCCh---hHHHHHHHHHhhCC-----C
Q psy7942           6 PGERRGGRTAEDIVNWLLKKTG--PPAKEFTSVDEIKAFIADSKVV-VAGLFKDASS---ELAKTFNEIASKVD-----D   74 (216)
Q Consensus         6 ~~~Y~G~Rta~~iv~~l~~~~~--~~v~~l~s~~~~~~~~~~~~v~-~V~f~~~~~~---~~~~~f~~~A~~~~-----~   74 (216)
                      +..|.|.++.+.+.+|+.+...  ..+..+ +.+.++.+...++.+ +|.|+.+||.   ...+.+.+++..+.     +
T Consensus        92 ~~~~~G~~~~~~l~~~l~~~l~~~~~~~~l-~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~  170 (226)
T 1a8l_A           92 GVRYFGLPAGHEFAAFLEDIVDVSREETNL-MDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGK  170 (226)
T ss_dssp             SEEEESCCCTTHHHHHHHHHHHHHHTCCCC-CHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             eEEEeccCcHHHHHHHHHHHHhhcCCCCCC-CHHHHHHHHhcCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCc
Confidence            3579999999999999988653  223344 456777776655554 9999999984   55678888888763     6


Q ss_pred             ceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942          75 LVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus        75 ~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      +.|+              .+|     ...+++++++|++.+ |++++|+++. ....|.|.. +.+.|.+||...
T Consensus       171 v~~~--------------~vd-----~~~~~~l~~~~~v~~~Pt~~~~~~G~-~~~~~~G~~-~~~~l~~~l~~~  224 (226)
T 1a8l_A          171 ILGD--------------MVE-----AIEYPEWADQYNVMAVPKIVIQVNGE-DRVEFEGAY-PEKMFLEKLLSA  224 (226)
T ss_dssp             EEEE--------------EEE-----GGGCHHHHHHTTCCSSCEEEEEETTE-EEEEEESCC-CHHHHHHHHHHH
T ss_pred             EEEE--------------EEE-----cccCHHHHHhCCCcccCeEEEEeCCc-eeEEEcCCC-CHHHHHHHHHHh
Confidence            7777              455     667788999999986 9999998532 345688998 889999999753

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=98.61  E-value=2.4e-07  Score=66.64  Aligned_cols=99  Identities=21%  Similarity=0.260  Sum_probs=76.6

Q ss_pred             ceeecCHHHHHHhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccH
Q psy7942          30 AKEFTSVDEIKAFIADSKVVVAGLFKDAS---SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNA  105 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~  105 (216)
                      +..++. +++++.+ .+++++|.|+.+||   ....+.+.+++..+ +++.|.              .++     ...++
T Consensus         3 v~~l~~-~~~~~~~-~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~--------------~vd-----~~~~~   61 (112)
T 2voc_A            3 IVKATD-QSFSAET-SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIV--------------KID-----VDENQ   61 (112)
T ss_dssp             CEECCT-TTHHHHH-SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEE--------------EEE-----TTTCC
T ss_pred             eEEecH-HHHHHHh-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEE--------------EEE-----CCCCH
Confidence            455654 7788888 88999999999997   45677888888887 567777              344     55677


Q ss_pred             HHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCC
Q psy7942         106 DILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLP  151 (216)
Q Consensus       106 ~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P  151 (216)
                      +++++|++.. |++++|+++ .....|.|.. +.+.|.+|+..+.-|
T Consensus        62 ~l~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~-~~~~l~~~l~~~~~~  106 (112)
T 2voc_A           62 ETAGKYGVMSIPTLLVLKDG-EVVETSVGFK-PKEALQELVNKHLLE  106 (112)
T ss_dssp             SHHHHTTCCSBSEEEEEETT-EEEEEEESCC-CHHHHHHHHHTTSCS
T ss_pred             HHHHHcCCCcccEEEEEeCC-EEEEEEeCCC-CHHHHHHHHHHHHHh
Confidence            8999999986 999999642 2234578998 999999999987544

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=98.59  E-value=3.7e-07  Score=66.20  Aligned_cols=97  Identities=19%  Similarity=0.228  Sum_probs=76.4

Q ss_pred             CceeecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecccH
Q psy7942          29 PAKEFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNA  105 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~  105 (216)
                      .+..+++.++++++++++++++|.|+.+||.   ...+.+.+++.++.++.|.              .++     ...++
T Consensus        13 ~~~~~~~~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~v~~~--------------~vd-----~~~~~   73 (114)
T 2oe3_A           13 SITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFV--------------KCD-----VDESP   73 (114)
T ss_dssp             GSCBCCSHHHHHHHHHHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEE--------------EEE-----TTTCH
T ss_pred             heeecCCHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEE--------------EEE-----CCCCH
Confidence            3568889999999999999999999999984   4567888889888668887              444     55678


Q ss_pred             HHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942         106 DILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       106 ~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                      +++++|++.. |++++|+++ .....+.|..  .+.|.+||..
T Consensus        74 ~l~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~--~~~l~~~l~~  113 (114)
T 2oe3_A           74 DIAKECEVTAMPTFVLGKDG-QLIGKIIGAN--PTALEKGIKD  113 (114)
T ss_dssp             HHHHHTTCCSBSEEEEEETT-EEEEEEESSC--HHHHHHHHHT
T ss_pred             HHHHHCCCCcccEEEEEeCC-eEEEEEeCCC--HHHHHHHHHh
Confidence            8999999986 999999742 2233467764  7889999875

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=98.59  E-value=6.7e-07  Score=64.13  Aligned_cols=100  Identities=19%  Similarity=0.331  Sum_probs=76.7

Q ss_pred             CCCceeecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          27 GPPAKEFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        27 ~~~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      .|+.....+.+++++.++.+++++|.|+.+||.   ...+.+.+++..+.++.|.              .++     ...
T Consensus         7 ~~~~~~~~~~~~f~~~~~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~v~~~--------------~vd-----~~~   67 (112)
T 1syr_A            7 HHMVKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFI--------------KVD-----VDE   67 (112)
T ss_dssp             --CCEEECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEE--------------EEE-----TTT
T ss_pred             ceeEEEECCHHHHHHHHccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCEEE--------------EEE-----CCC
Confidence            345566778899999999999999999999984   5567888888888778887              344     556


Q ss_pred             cHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         104 NADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       104 ~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      +++++++|++.. |++++|+++ .....+.|.  +.+.|.+||...
T Consensus        68 ~~~~~~~~~v~~~Pt~~~~~~G-~~~~~~~G~--~~~~l~~~l~~~  110 (112)
T 1syr_A           68 VSEVTEKENITSMPTFKVYKNG-SSVDTLLGA--NDSALKQLIEKY  110 (112)
T ss_dssp             THHHHHHTTCCSSSEEEEEETT-EEEEEEESC--CHHHHHHHHHTT
T ss_pred             CHHHHHHcCCCcccEEEEEECC-cEEEEEeCC--CHHHHHHHHHHh
Confidence            778999999986 999999842 223346675  788999999764

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=98.58  E-value=3.9e-07  Score=64.29  Aligned_cols=99  Identities=19%  Similarity=0.281  Sum_probs=77.9

Q ss_pred             CCceeecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          28 PPAKEFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        28 ~~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      +.+..+ +.+++++.+.++++++|.|+.+||.   ...+.+.+++..+ +.+.|.              .++     ...
T Consensus         4 ~~v~~l-~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~--------------~v~-----~~~   63 (109)
T 3tco_A            4 DVTLVL-TEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFG--------------RLN-----VDE   63 (109)
T ss_dssp             CCCEEC-CTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEE--------------EEE-----TTT
T ss_pred             CeEEEe-cHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEE--------------EEc-----ccc
Confidence            345555 4588999998999999999999984   5567888889888 478887              444     567


Q ss_pred             cHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         104 NADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       104 ~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      +++++++|++.. |++++|+++ .....|.|.. +.+.|.+||...
T Consensus        64 ~~~~~~~~~i~~~Pt~~~~~~g-~~~~~~~g~~-~~~~l~~~l~~~  107 (109)
T 3tco_A           64 NQKIADKYSVLNIPTTLIFVNG-QLVDSLVGAV-DEDTLESTVNKY  107 (109)
T ss_dssp             CHHHHHHTTCCSSSEEEEEETT-EEEEEEESCC-CHHHHHHHHHHH
T ss_pred             CHHHHHhcCcccCCEEEEEcCC-cEEEeeeccC-CHHHHHHHHHHH
Confidence            788999999986 999999642 2345588988 899999999764

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=98.58  E-value=1.9e-07  Score=71.10  Aligned_cols=106  Identities=13%  Similarity=0.072  Sum_probs=69.0

Q ss_pred             CceeecCHHHHHHhHhCCCeEEEEEecCC--C---hhHHHHHHHHHhhCCCce--EEecchhhHHHHhhhhccccceeee
Q psy7942          29 PAKEFTSVDEIKAFIADSKVVVAGLFKDA--S---SELAKTFNEIASKVDDLV--FDASSELAKTFNEIASKVDDLVFVT  101 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~~~~~v~~V~f~~~~--~---~~~~~~f~~~A~~~~~~~--F~~~~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      .+..+++ +++++++.+++.++|.|+.+|  |   ..+.+.|.++|++++.+.  |+              .||     .
T Consensus        18 ~~~~l~~-~~f~~~i~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~~~v~~~~~--------------~Vd-----~   77 (142)
T 2es7_A           18 GWQPVEA-STVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVA--------------VAD-----L   77 (142)
T ss_dssp             TCEECCC-C--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEE--------------EEC-----H
T ss_pred             cCccccc-ccHHHHHHhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHhcccceeEE--------------EEE-----C
Confidence            5667765 889999988777888777665  3   457889999998886677  77              555     6


Q ss_pred             cccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCCceeee
Q psy7942         102 STNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEF  156 (216)
Q Consensus       102 t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~  156 (216)
                      ..+++++.+|+|.. |++++|+++ +....|.|.. +.+.|.+||....-+.....
T Consensus        78 d~~~~la~~~~V~~iPT~~~fk~G-~~v~~~~G~~-~~~~l~~~i~~~l~~~~~~~  131 (142)
T 2es7_A           78 EQSEAIGDRFNVRRFPATLVFTDG-KLRGALSGIH-PWAELLTLMRSIVDTPAAQE  131 (142)
T ss_dssp             HHHHHHHHTTTCCSSSEEEEESCC-----CEESCC-CHHHHHHHHHHHHC------
T ss_pred             CCCHHHHHhcCCCcCCeEEEEeCC-EEEEEEeCCC-CHHHHHHHHHHHhcccccCC
Confidence            66788999999986 999999753 3345688988 88999999988654444433

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.58  E-value=5.6e-07  Score=66.03  Aligned_cols=99  Identities=15%  Similarity=0.257  Sum_probs=77.2

Q ss_pred             CceeecCHHHHHH-hHhCCCeEEEEEecCCC---hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          29 PAKEFTSVDEIKA-FIADSKVVVAGLFKDAS---SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        29 ~v~~l~s~~~~~~-~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      .+..++. ++++. +++++++++|.|+.+||   ....+.+.+++..+ +.+.|+              .++     ...
T Consensus        18 ~v~~l~~-~~f~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~--------------~vd-----~~~   77 (130)
T 2dml_A           18 DVIELTP-SNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVG--------------AVN-----ADK   77 (130)
T ss_dssp             SSEECCT-TTHHHHTTTCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEE--------------EEE-----TTT
T ss_pred             CcEECCH-HHHHHHHhcCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEE--------------EEe-----CCC
Confidence            3556654 67776 45678899999999997   56778899999988 457777              344     556


Q ss_pred             cHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         104 NADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       104 ~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      +++++++|++.. |++++|++.......|.|.. +.+.|.+||...
T Consensus        78 ~~~l~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~-~~~~l~~~l~~~  122 (130)
T 2dml_A           78 HQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGR-TGEAIVDAALSA  122 (130)
T ss_dssp             CHHHHHHHTCCSSSEEEEESSCTTSCEECCSCC-SHHHHHHHHHHH
T ss_pred             CHHHHHHcCCCccCEEEEEeCCCCeEEEeecCC-CHHHHHHHHHHH
Confidence            788999999986 99999987444356789988 899999999764

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=98.57  E-value=5.8e-07  Score=64.01  Aligned_cols=99  Identities=16%  Similarity=0.216  Sum_probs=76.4

Q ss_pred             CCceeecCHHHHHHhHhC----CCeEEEEEecCCCh---hHHHHHHHHHhhCC-CceEEecchhhHHHHhhhhcccccee
Q psy7942          28 PPAKEFTSVDEIKAFIAD----SKVVVAGLFKDASS---ELAKTFNEIASKVD-DLVFDASSELAKTFNEIASKVDDLVF   99 (216)
Q Consensus        28 ~~v~~l~s~~~~~~~~~~----~~v~~V~f~~~~~~---~~~~~f~~~A~~~~-~~~F~~~~~~~~~~~~~~~~~~~~~~   99 (216)
                      ..+..+++.+++++.+..    +++++|.|+.+||.   ...+.|.+++..+. ++.|.              .++    
T Consensus         2 ~~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~--------------~vd----   63 (112)
T 1ep7_A            2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFL--------------KVD----   63 (112)
T ss_dssp             CSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEE--------------EEE----
T ss_pred             CcEEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEE--------------EEE----
Confidence            357788889999998875    88999999999984   45678888888884 78887              344    


Q ss_pred             eecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         100 VTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       100 ~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                       ...+++++++|++.. |++++|+++ .....+.|.  +.+.|.+||...
T Consensus        64 -~~~~~~~~~~~~v~~~Pt~~~~~~G-~~~~~~~G~--~~~~l~~~l~~~  109 (112)
T 1ep7_A           64 -VDAVAAVAEAAGITAMPTFHVYKDG-VKADDLVGA--SQDKLKALVAKH  109 (112)
T ss_dssp             -TTTTHHHHHHHTCCBSSEEEEEETT-EEEEEEESC--CHHHHHHHHHHH
T ss_pred             -CCchHHHHHHcCCCcccEEEEEECC-eEEEEEcCC--CHHHHHHHHHHH
Confidence             556788999999986 999999742 223346775  678899998754

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=98.56  E-value=5.2e-07  Score=63.46  Aligned_cols=98  Identities=19%  Similarity=0.234  Sum_probs=76.2

Q ss_pred             CCceeecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          28 PPAKEFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        28 ~~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      .++..++ .+++++.+ ++++++|.|+.+||.   ...+.+.+++..+ +.+.|.              .++     ...
T Consensus         3 ~~v~~l~-~~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~--------------~v~-----~~~   61 (106)
T 3die_A            3 MAIVKVT-DADFDSKV-ESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADIL--------------KLD-----VDE   61 (106)
T ss_dssp             CCCEECC-TTTHHHHS-CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEE--------------EEE-----TTT
T ss_pred             cceEECC-HHHHHHHh-cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEE--------------EEE-----CCc
Confidence            3456664 57888888 889999999999984   5567888999888 457777              344     567


Q ss_pred             cHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         104 NADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       104 ~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      +++++++|++.. |++++|+++ +....+.|.. +.+.|.+||...
T Consensus        62 ~~~~~~~~~v~~~Pt~~~~~~G-~~~~~~~g~~-~~~~l~~~l~~~  105 (106)
T 3die_A           62 NPSTAAKYEVMSIPTLIVFKDG-QPVDKVVGFQ-PKENLAEVLDKH  105 (106)
T ss_dssp             CHHHHHHTTCCSBSEEEEEETT-EEEEEEESCC-CHHHHHHHHHTT
T ss_pred             CHHHHHhCCCcccCEEEEEeCC-eEEEEEeCCC-CHHHHHHHHHHh
Confidence            788999999987 999999842 2234678988 899999999764

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=98.56  E-value=5.3e-07  Score=62.87  Aligned_cols=95  Identities=22%  Similarity=0.333  Sum_probs=73.7

Q ss_pred             eecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecccHHHH
Q psy7942          32 EFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADIL  108 (216)
Q Consensus        32 ~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~  108 (216)
                      .++ .+++++.++++++++|.|+.+||.   ...+.+.+++..+.++.|.              .++     ...+++++
T Consensus         3 ~l~-~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~--------------~v~-----~~~~~~~~   62 (104)
T 2e0q_A            3 HLD-SKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFG--------------KLN-----SDENPDIA   62 (104)
T ss_dssp             ECC-TTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEE--------------EEE-----TTTCHHHH
T ss_pred             ecC-HHHHHHHHhcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCCceEE--------------EEE-----CCCCHHHH
Confidence            444 467888888899999999999984   4567888888888558887              344     55678899


Q ss_pred             HhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         109 AEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       109 ~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ++|++.. |++++|+++ +....|.|.. +.+.|.+||...
T Consensus        63 ~~~~v~~~Pt~~~~~~g-~~~~~~~g~~-~~~~l~~~l~~~  101 (104)
T 2e0q_A           63 ARYGVMSLPTVIFFKDG-EPVDEIIGAV-PREEIEIRIKNL  101 (104)
T ss_dssp             HHTTCCSSCEEEEEETT-EEEEEEESCC-CHHHHHHHHHHH
T ss_pred             HhCCccccCEEEEEECC-eEhhhccCCC-CHHHHHHHHHHH
Confidence            9999986 999999642 2234678988 899999999764

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=98.56  E-value=8.2e-07  Score=65.31  Aligned_cols=99  Identities=17%  Similarity=0.244  Sum_probs=76.3

Q ss_pred             CCceeecCHHHHHHhHhC----CCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceee
Q psy7942          28 PPAKEFTSVDEIKAFIAD----SKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFV  100 (216)
Q Consensus        28 ~~v~~l~s~~~~~~~~~~----~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~  100 (216)
                      ..+..|.+.++++..++.    +++++|.|+.+||.   ...+.+.+++.++.++.|.              .++     
T Consensus        16 ~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~--------------~vd-----   76 (124)
T 1xfl_A           16 GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFL--------------KVD-----   76 (124)
T ss_dssp             SCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSSEEEE--------------EEE-----
T ss_pred             CcEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEE--------------EEE-----
Confidence            346788899999887764    88999999999984   4567888888888777777              344     


Q ss_pred             ecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         101 TSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       101 ~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ...+++++++|++.. |++++|+++ +....+.| . +.+.|.+||...
T Consensus        77 ~d~~~~l~~~~~v~~~Pt~~~~~~G-~~~~~~~G-~-~~~~l~~~l~~~  122 (124)
T 1xfl_A           77 TDELKSVASDWAIQAMPTFMFLKEG-KILDKVVG-A-KKDELQSTIAKH  122 (124)
T ss_dssp             TTTSHHHHHHTTCCSSSEEEEEETT-EEEEEEES-C-CHHHHHHHHHHH
T ss_pred             CccCHHHHHHcCCCccCEEEEEECC-EEEEEEeC-C-CHHHHHHHHHHh
Confidence            556788999999986 999999742 22334677 5 788999998763

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=98.55  E-value=4.8e-07  Score=64.85  Aligned_cols=101  Identities=18%  Similarity=0.348  Sum_probs=77.6

Q ss_pred             ceeecCHHHHHHhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhCC----CceEEecchhhHHHHhhhhccccceeeec
Q psy7942          30 AKEFTSVDEIKAFIADSKVVVAGLFKDAS---SELAKTFNEIASKVD----DLVFDASSELAKTFNEIASKVDDLVFVTS  102 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~~----~~~F~~~~~~~~~~~~~~~~~~~~~~~~t  102 (216)
                      +..++ .++++..++++++++|.|+.+||   ....+.|.+++..+.    .+.|+              .+|     ..
T Consensus         9 v~~l~-~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~--------------~vd-----~~   68 (120)
T 1mek_A            9 VLVLR-KSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLA--------------KVD-----AT   68 (120)
T ss_dssp             EEECC-TTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCE--------------EEE-----TT
T ss_pred             cEEec-hhhHHHHHccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEE--------------EEc-----CC
Confidence            45564 47888888889999999999987   456788888888772    46666              344     55


Q ss_pred             ccHHHHHhcCCCC-CeEEEEecCCC-CcccccCCCCCHHHHHHHHhhcCCC
Q psy7942         103 TNADILAEYSVDD-DTVAIFKKFDE-GRVNYEGPASDEAALRKFLSTQSLP  151 (216)
Q Consensus       103 ~~~~v~~~~~v~~-p~i~~~~~~de-~~~~y~G~~~~~~~l~~fi~~~~~P  151 (216)
                      .+++++++|++.. |++++|+++.. ....|.|.. +.+.|.+||....-|
T Consensus        69 ~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g~~-~~~~l~~~l~~~~~~  118 (120)
T 1mek_A           69 EESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGR-EADDIVNWLKKRTGP  118 (120)
T ss_dssp             TCCSSHHHHTCCSSSEEEEEESSCSSSCEECCCCS-SHHHHHHHHHTTSCC
T ss_pred             CCHHHHHHCCCCcccEEEEEeCCCcCCcccccCcc-CHHHHHHHHHhccCC
Confidence            5678899999986 99999975332 126788988 999999999987644

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=98.55  E-value=4e-07  Score=72.99  Aligned_cols=106  Identities=20%  Similarity=0.283  Sum_probs=83.8

Q ss_pred             ceeecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccH
Q psy7942          30 AKEFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNA  105 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~  105 (216)
                      +..+ +.++++..+..+++++|.|+.+||.   ...+.|.+++..+ +.+.|+              .|+     +..++
T Consensus        99 v~~l-~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~--------------~vd-----~~~~~  158 (210)
T 3apq_A           99 IITL-ERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIG--------------AVN-----CGDDR  158 (210)
T ss_dssp             SEEC-CHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEE--------------EEE-----TTTCH
T ss_pred             eEEe-cHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEE--------------EEE-----CCccH
Confidence            4455 5688888888899999999999984   5567889999888 568887              455     66778


Q ss_pred             HHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCCceeeeC
Q psy7942         106 DILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFN  157 (216)
Q Consensus       106 ~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~~  157 (216)
                      +++++|++.. |++++|+++ .....|.|.. +.+.|.+||....-+.+.+++
T Consensus       159 ~l~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~-~~~~l~~~i~~~l~~~~~~i~  209 (210)
T 3apq_A          159 MLCRMKGVNSYPSLFIFRSG-MAAVKYNGDR-SKESLVAFAMQHVRSTVTELS  209 (210)
T ss_dssp             HHHHHTTCCSSSEEEEECTT-SCCEECCSCC-CHHHHHHHHHHHHHCCSSCC-
T ss_pred             HHHHHcCCCcCCeEEEEECC-CceeEecCCC-CHHHHHHHHHHhCcccceecC
Confidence            8999999986 999999653 3356789988 999999999987666666554

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=98.55  E-value=6.3e-07  Score=63.08  Aligned_cols=97  Identities=15%  Similarity=0.219  Sum_probs=74.2

Q ss_pred             ceeecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccH
Q psy7942          30 AKEFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNA  105 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~  105 (216)
                      +..+++ ++++..++++++++|.|+.+||.   ...+.+.+++..+ +.+.|.              .++     ...++
T Consensus         2 v~~l~~-~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~--------------~v~-----~~~~~   61 (105)
T 1nsw_A            2 TMTLTD-ANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVA--------------KLN-----VDENP   61 (105)
T ss_dssp             CEEECT-TTHHHHHSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEE--------------EEE-----TTTCH
T ss_pred             ceeccH-HhHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEE--------------EEE-----CcCCH
Confidence            445654 67788888889999999999984   4567888888888 457777              344     55678


Q ss_pred             HHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         106 DILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       106 ~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      +++++|++.. |++++|+++ .....+.|.. +.+.|.+||...
T Consensus        62 ~~~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~-~~~~l~~~l~~~  103 (105)
T 1nsw_A           62 ETTSQFGIMSIPTLILFKGG-RPVKQLIGYQ-PKEQLEAQLADV  103 (105)
T ss_dssp             HHHHHTTCCSSSEEEEEETT-EEEEEEESCC-CHHHHHHHTTTT
T ss_pred             HHHHHcCCccccEEEEEeCC-eEEEEEecCC-CHHHHHHHHHHH
Confidence            8999999986 999999642 2234578888 889999998754

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=98.55  E-value=9.7e-07  Score=63.21  Aligned_cols=97  Identities=20%  Similarity=0.345  Sum_probs=76.7

Q ss_pred             ceeecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecccHH
Q psy7942          30 AKEFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNAD  106 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~  106 (216)
                      .....+.++++..++++++++|.|+.+||.   ...+.+.+++.++.++.|.              .++     ...+++
T Consensus         8 ~~~~~~~~~f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~--------------~vd-----~~~~~~   68 (109)
T 3f3q_A            8 VTQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFY--------------KLD-----VDELGD   68 (109)
T ss_dssp             CEECCSHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEE--------------EEE-----TTTCHH
T ss_pred             ccCCCCHHHHHHHHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEE--------------EEE-----CCCCHH
Confidence            445678899999999999999999999984   5567888889888778887              454     567788


Q ss_pred             HHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         107 ILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       107 v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ++++|++.. |++++|++ .+....+.|.  +.+.|.+||...
T Consensus        69 l~~~~~v~~~Pt~~~~~~-G~~~~~~~G~--~~~~l~~~i~~~  108 (109)
T 3f3q_A           69 VAQKNEVSAMPTLLLFKN-GKEVAKVVGA--NPAAIKQAIAAN  108 (109)
T ss_dssp             HHHHTTCCSSSEEEEEET-TEEEEEEESS--CHHHHHHHHHHH
T ss_pred             HHHHcCCCccCEEEEEEC-CEEEEEEeCC--CHHHHHHHHHhh
Confidence            999999986 99999984 2223456676  458899998764

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=98.53  E-value=7.2e-07  Score=62.80  Aligned_cols=97  Identities=19%  Similarity=0.257  Sum_probs=74.9

Q ss_pred             ceeecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccH
Q psy7942          30 AKEFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNA  105 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~  105 (216)
                      +..++ .++++.+++.+++++|.|+.+||.   ...+.+.+++..+ +++.|.              .++     ...++
T Consensus         3 v~~l~-~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~--------------~v~-----~~~~~   62 (109)
T 2yzu_A            3 PIEVT-DQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVA--------------KLD-----VDENP   62 (109)
T ss_dssp             CEECC-TTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEE--------------EEE-----TTTCH
T ss_pred             ceEcc-HhHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEE--------------EEE-----CCCCH
Confidence            34554 467778888899999999999984   4567888889888 468887              444     55678


Q ss_pred             HHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         106 DILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       106 ~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      +++++|++.. |++++|+++ .....|.|.. +.+.|.+||...
T Consensus        63 ~~~~~~~v~~~Pt~~~~~~g-~~~~~~~g~~-~~~~l~~~l~~~  104 (109)
T 2yzu_A           63 KTAMRYRVMSIPTVILFKDG-QPVEVLVGAQ-PKRNYQAKIEKH  104 (109)
T ss_dssp             HHHHHTTCCSSSEEEEEETT-EEEEEEESCC-CHHHHHHHHHTT
T ss_pred             hHHHhCCCCcCCEEEEEeCC-cEeeeEeCCC-CHHHHHHHHHHH
Confidence            8999999986 999999642 2234578988 899999999865

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=98.53  E-value=6.5e-07  Score=64.64  Aligned_cols=96  Identities=22%  Similarity=0.332  Sum_probs=74.9

Q ss_pred             ceeecCHHHHHHhHh--CCCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeeccc
Q psy7942          30 AKEFTSVDEIKAFIA--DSKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTN  104 (216)
Q Consensus        30 v~~l~s~~~~~~~~~--~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~  104 (216)
                      +..+++.+++++.++  .+++++|.|+.+||.   ...+.+.+++..+ ++.|.              .+|     ...+
T Consensus        15 v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~-~~~~~--------------~vd-----~~~~   74 (117)
T 2xc2_A           15 LIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY-DAIFV--------------KVD-----VDKL   74 (117)
T ss_dssp             EEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS-SSEEE--------------EEE-----TTTS
T ss_pred             eEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc-CcEEE--------------EEE-----CCcc
Confidence            667888789998887  688999999999984   4567888888887 77777              344     5567


Q ss_pred             HHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         105 ADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       105 ~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ++++++|++.. |++++|+++ .....+.| . +.+.|.+||...
T Consensus        75 ~~~~~~~~v~~~Pt~~~~~~G-~~~~~~~G-~-~~~~l~~~l~~~  116 (117)
T 2xc2_A           75 EETARKYNISAMPTFIAIKNG-EKVGDVVG-A-SIAKVEDMIKKF  116 (117)
T ss_dssp             HHHHHHTTCCSSSEEEEEETT-EEEEEEES-S-CHHHHHHHHHHH
T ss_pred             HHHHHHcCCCccceEEEEeCC-cEEEEEeC-C-CHHHHHHHHHHh
Confidence            88999999986 999999742 22345678 6 788999998753

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=98.53  E-value=6.2e-07  Score=63.15  Aligned_cols=98  Identities=12%  Similarity=0.223  Sum_probs=73.2

Q ss_pred             CceeecCHHHHHHh-HhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          29 PAKEFTSVDEIKAF-IADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        29 ~v~~l~s~~~~~~~-~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      .+..++. ++++.. .+++++++|.|+.+||.   ...+.+.+++..+ +++.|.              .++     ...
T Consensus         3 ~v~~l~~-~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~--------------~v~-----~~~   62 (107)
T 2i4a_A            3 HTLAVSD-SSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVA--------------KVN-----IDD   62 (107)
T ss_dssp             CEEECCT-TTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEE--------------EEE-----TTT
T ss_pred             ceeecch-hhhhHHHHhCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEE--------------EEE-----CCC
Confidence            3555654 566654 46788999999999984   5566888888887 467777              344     556


Q ss_pred             cHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         104 NADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       104 ~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      +++++++|++.. |++++|+++ .....+.|.. +.+.|.+||...
T Consensus        63 ~~~~~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~-~~~~l~~~l~~~  106 (107)
T 2i4a_A           63 NPETPNAYQVRSIPTLMLVRDG-KVIDKKVGAL-PKSQLKAWVESA  106 (107)
T ss_dssp             CCHHHHHTTCCSSSEEEEEETT-EEEEEEESCC-CHHHHHHHHHHT
T ss_pred             CHHHHHhcCCCccCEEEEEeCC-EEEEEecCCC-CHHHHHHHHHhc
Confidence            778999999986 999999642 2234578988 899999999864

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=98.52  E-value=7.2e-07  Score=64.43  Aligned_cols=100  Identities=23%  Similarity=0.294  Sum_probs=75.3

Q ss_pred             CCCceeecCHHHHH-HhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeee
Q psy7942          27 GPPAKEFTSVDEIK-AFIADSKVVVAGLFKDAS---SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVT  101 (216)
Q Consensus        27 ~~~v~~l~s~~~~~-~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      ...+..+++ +++. ..++++++++|.|+.+||   ....+.|.+++..+ +++.|.              .++     .
T Consensus        11 ~~~v~~l~~-~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~--------------~v~-----~   70 (121)
T 2i1u_A           11 KSATIKVTD-ASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVA--------------KLD-----V   70 (121)
T ss_dssp             -CCSEECCT-TTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEE--------------EEE-----T
T ss_pred             cccceecCH-HHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEE--------------EEE-----C
Confidence            445677765 4555 456678899999999998   45567888899888 568887              344     5


Q ss_pred             cccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         102 STNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       102 t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ..+++++++|++.. |++++|+++ +....+.|.. +.+.|.+||...
T Consensus        71 ~~~~~~~~~~~i~~~Pt~~~~~~g-~~~~~~~G~~-~~~~l~~~l~~~  116 (121)
T 2i1u_A           71 DTNPETARNFQVVSIPTLILFKDG-QPVKRIVGAK-GKAALLRELSDV  116 (121)
T ss_dssp             TTCHHHHHHTTCCSSSEEEEEETT-EEEEEEESCC-CHHHHHHHTCSC
T ss_pred             CCCHHHHHhcCCCcCCEEEEEECC-EEEEEecCCC-CHHHHHHHHHHH
Confidence            56788999999986 999999842 2234578988 899999999865

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=98.52  E-value=4.8e-07  Score=68.87  Aligned_cols=108  Identities=13%  Similarity=0.089  Sum_probs=82.6

Q ss_pred             HHHHHHHhhhCCCceeecCHHHHHHhHhCCCeEEEEEecCCCh-----hHHHHHHHHHhhC-CC-ceEEecchhhHHHHh
Q psy7942          17 DIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASS-----ELAKTFNEIASKV-DD-LVFDASSELAKTFNE   89 (216)
Q Consensus        17 ~iv~~l~~~~~~~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~-----~~~~~f~~~A~~~-~~-~~F~~~~~~~~~~~~   89 (216)
                      .|++=|...   ....+ +.+++++.+.+..+++|.|+.+|+.     ...+.+.++|..+ +. +.|+           
T Consensus         9 pl~~rl~~~---g~~~~-t~~~F~~~v~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~-----------   73 (140)
T 2qgv_A            9 ALWQRMLAR---GWTPV-SESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVA-----------   73 (140)
T ss_dssp             HHHHHHHHT---TCEEC-CHHHHHHHHHTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEE-----------
T ss_pred             hHHHHHHhc---CCccC-CHHHHHHHHhCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEE-----------
Confidence            344444444   44456 4689999888777888888888743     6788999999999 56 8998           


Q ss_pred             hhhccccceeeecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcC
Q psy7942          90 IASKVDDLVFVTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQS  149 (216)
Q Consensus        90 ~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~  149 (216)
                         +||     ...+++++.+|+|.. ||+++||++.. .....|.. ..+.|.+||....
T Consensus        74 ---KVd-----vDe~~~lA~~ygV~sIPTlilFk~G~~-v~~~~G~~-~k~~l~~~i~~~l  124 (140)
T 2qgv_A           74 ---IAD-----LEQSEAIGDRFGAFRFPATLVFTGGNY-RGVLNGIH-PWAELINLMRGLV  124 (140)
T ss_dssp             ---ECC-----HHHHHHHHHHHTCCSSSEEEEEETTEE-EEEEESCC-CHHHHHHHHHHHH
T ss_pred             ---EEE-----CCCCHHHHHHcCCccCCEEEEEECCEE-EEEEecCC-CHHHHHHHHHHHh
Confidence               666     667889999999986 99999996432 34567887 8889999998653

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=98.51  E-value=1.3e-06  Score=62.71  Aligned_cols=100  Identities=20%  Similarity=0.245  Sum_probs=76.8

Q ss_pred             CCCceeecCHHHHHHhHhC----CCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhcccccee
Q psy7942          27 GPPAKEFTSVDEIKAFIAD----SKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVF   99 (216)
Q Consensus        27 ~~~v~~l~s~~~~~~~~~~----~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~   99 (216)
                      +..+..+.+.++++..+..    +++++|.|+.+||.   ...+.+.+++..++++.|.              .++    
T Consensus         5 ~~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~--------------~v~----   66 (118)
T 2vm1_A            5 EGAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPGAIFL--------------KVD----   66 (118)
T ss_dssp             CCCEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEE--------------EEE----
T ss_pred             CCceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCcEEE--------------EEE----
Confidence            3456788889999988765    78999999999984   4567888888888778777              344    


Q ss_pred             eecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         100 VTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       100 ~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                       ...+++++++|++.. |++++|+++ +....+.| . +.+.|.+||...
T Consensus        67 -~~~~~~~~~~~~v~~~Pt~~~~~~g-~~~~~~~g-~-~~~~l~~~l~~~  112 (118)
T 2vm1_A           67 -VDELKDVAEAYNVEAMPTFLFIKDG-EKVDSVVG-G-RKDDIHTKIVAL  112 (118)
T ss_dssp             -TTTSHHHHHHTTCCSBSEEEEEETT-EEEEEEES-C-CHHHHHHHHHHH
T ss_pred             -cccCHHHHHHcCCCcCcEEEEEeCC-eEEEEecC-C-CHHHHHHHHHHH
Confidence             556778999999986 999999742 22334667 5 788999999764

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.51  E-value=8.3e-07  Score=65.17  Aligned_cols=98  Identities=20%  Similarity=0.336  Sum_probs=75.1

Q ss_pred             CceeecCHHHHHHhH-hCCCeEEEEEecCCCh---hHHHHHHHHHhhC-----CCceEEecchhhHHHHhhhhcccccee
Q psy7942          29 PAKEFTSVDEIKAFI-ADSKVVVAGLFKDASS---ELAKTFNEIASKV-----DDLVFDASSELAKTFNEIASKVDDLVF   99 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~-~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-----~~~~F~~~~~~~~~~~~~~~~~~~~~~   99 (216)
                      .+..++. ++++..+ +++++++|.|+.+||.   ...+.|.+++..+     +.+.|+              .+|    
T Consensus         8 ~v~~l~~-~~~~~~~~~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~--------------~vd----   68 (133)
T 1x5d_A            8 DVIELTD-DSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLA--------------AVD----   68 (133)
T ss_dssp             SCEECCT-THHHHHTTTSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEE--------------EEE----
T ss_pred             cCEEcCH-hhHHHHHhcCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEE--------------EEE----
Confidence            3566654 6777755 5788999999999984   4567788888776     357777              444    


Q ss_pred             eecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         100 VTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       100 ~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                       ...+++++++|++.. |++++|++ ......|.|.. +.+.|.+||...
T Consensus        69 -~~~~~~l~~~~~v~~~Pt~~~~~~-g~~~~~~~G~~-~~~~l~~~l~~~  115 (133)
T 1x5d_A           69 -ATVNQVLASRYGIRGFPTIKIFQK-GESPVDYDGGR-TRSDIVSRALDL  115 (133)
T ss_dssp             -TTTCCHHHHHHTCCSSSEEEEEET-TEEEEEECSCC-SHHHHHHHHHHH
T ss_pred             -CCCCHHHHHhCCCCeeCeEEEEeC-CCceEEecCCC-CHHHHHHHHHHH
Confidence             556778999999986 99999997 33355688988 999999999864

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=98.51  E-value=6.4e-07  Score=65.37  Aligned_cols=99  Identities=21%  Similarity=0.298  Sum_probs=76.2

Q ss_pred             CCceeecCHHHHHHhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhCCC--ceEEecchhhHHHHhhhhccccceeeec
Q psy7942          28 PPAKEFTSVDEIKAFIADSKVVVAGLFKDAS---SELAKTFNEIASKVDD--LVFDASSELAKTFNEIASKVDDLVFVTS  102 (216)
Q Consensus        28 ~~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~~~--~~F~~~~~~~~~~~~~~~~~~~~~~~~t  102 (216)
                      ..+..|++.+++++.++.+++++|.|+.+||   ....+.+.+++..+..  +.|.              .++     ..
T Consensus        15 ~~~~~i~~~~~f~~~l~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~--------------~vd-----~d   75 (121)
T 2j23_A           15 GSVQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFY--------------KVD-----VD   75 (121)
T ss_dssp             CCEEECCSHHHHHHHHSSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEE--------------EEE-----TT
T ss_pred             cceEEcCCHHHHHHHHcCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEE--------------EEE-----Cc
Confidence            4567899999999999889999999999997   4556788888887732  7776              344     55


Q ss_pred             ccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         103 TNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       103 ~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      .+++++++|++.. |++++|+++ .....+.|.  +.+.|.+||...
T Consensus        76 ~~~~~~~~~~v~~~Pt~~~~~~G-~~~~~~~G~--~~~~l~~~l~~~  119 (121)
T 2j23_A           76 EQSQIAQEVGIRAMPTFVFFKNG-QKIDTVVGA--DPSKLQAAITQH  119 (121)
T ss_dssp             TCHHHHHHHTCCSSSEEEEEETT-EEEEEEESS--CHHHHHHHHHHH
T ss_pred             CCHHHHHHcCCCcccEEEEEECC-eEEeeEcCC--CHHHHHHHHHHh
Confidence            6788999999986 999999742 223346775  678999999764

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=98.51  E-value=5.3e-07  Score=67.59  Aligned_cols=100  Identities=20%  Similarity=0.225  Sum_probs=77.8

Q ss_pred             CCCceeecCHHHHH-HhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeee
Q psy7942          27 GPPAKEFTSVDEIK-AFIADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVT  101 (216)
Q Consensus        27 ~~~v~~l~s~~~~~-~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      ...+..++ .++++ .+++++++++|.|+.+||.   ...+.+.+++..+ +.+.|+              .|+     .
T Consensus         5 ~~~v~~l~-~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~--------------~vd-----~   64 (140)
T 3hz4_A            5 GSSIIEFE-DMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFG--------------RIN-----I   64 (140)
T ss_dssp             TTTEEEEC-HHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEE--------------EEE-----T
T ss_pred             CcceEEcc-hHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEE--------------EEE-----C
Confidence            34566675 56777 6777899999999999984   5567888889888 458887              455     6


Q ss_pred             cccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         102 STNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       102 t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ..+++++++|++.. |++++|+++ .....|.|.. +.+.|.+||...
T Consensus        65 ~~~~~l~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~-~~~~l~~~l~~~  110 (140)
T 3hz4_A           65 ATNPWTAEKYGVQGTPTFKFFCHG-RPVWEQVGQI-YPSILKNAVRDM  110 (140)
T ss_dssp             TTCHHHHHHHTCCEESEEEEEETT-EEEEEEESSC-CHHHHHHHHHHH
T ss_pred             CcCHhHHHHCCCCcCCEEEEEeCC-cEEEEEcCCC-CHHHHHHHHHHH
Confidence            67889999999986 999999752 2234688988 899999999865

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=98.50  E-value=9.5e-07  Score=62.97  Aligned_cols=98  Identities=20%  Similarity=0.293  Sum_probs=73.4

Q ss_pred             CceeecCHHHHH-HhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          29 PAKEFTSVDEIK-AFIADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        29 ~v~~l~s~~~~~-~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      .+..+++ +++. ..++++++++|.|+.+||.   ...+.+.+++..+ +.+.|.              .++     ...
T Consensus         6 ~v~~l~~-~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~--------------~v~-----~~~   65 (112)
T 1t00_A            6 TLKHVTD-DSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIV--------------KLN-----IDE   65 (112)
T ss_dssp             CCEEECT-TTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEE--------------EEE-----TTT
T ss_pred             eEEecch-hhHHHHHhhCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEE--------------EEE-----cCC
Confidence            4567765 4554 4556788999999999984   4567888888888 567777              344     556


Q ss_pred             cHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         104 NADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       104 ~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      +++++++|++.. |++++|+++ +....+.|.. +.+.|.+||...
T Consensus        66 ~~~~~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~-~~~~l~~~l~~~  109 (112)
T 1t00_A           66 NPGTAAKYGVMSIPTLNVYQGG-EVAKTIVGAK-PKAAIVRDLEDF  109 (112)
T ss_dssp             CHHHHHHTTCCSSSEEEEEETT-EEEEEEESCC-CHHHHHHHTHHH
T ss_pred             CHHHHHhCCCCcccEEEEEeCC-EEEEEEeCCC-CHHHHHHHHHHH
Confidence            788999999986 999999742 2234578988 889999998753

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=98.50  E-value=5.3e-07  Score=71.35  Aligned_cols=117  Identities=11%  Similarity=0.161  Sum_probs=82.0

Q ss_pred             hhCCCceeecCHHHHHHhHhC--CCeEEEEEec-------CCC---hhHHHHHHHHHhhC------CCceEEecchhhHH
Q psy7942          25 KTGPPAKEFTSVDEIKAFIAD--SKVVVAGLFK-------DAS---SELAKTFNEIASKV------DDLVFDASSELAKT   86 (216)
Q Consensus        25 ~~~~~v~~l~s~~~~~~~~~~--~~v~~V~f~~-------~~~---~~~~~~f~~~A~~~------~~~~F~~~~~~~~~   86 (216)
                      .....+..|+ .+++++++..  +..++|.|.+       .||   ....+.|.++|..+      +.+.|+        
T Consensus        15 ~~~~~vi~lt-~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~--------   85 (178)
T 3ga4_A           15 KDDTGVITVT-ADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFF--------   85 (178)
T ss_dssp             CCTTSEEECC-TTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEE--------
T ss_pred             hccCCCEECC-HHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEE--------
Confidence            3345677776 4788888864  3467888887       387   45577999999876      467788        


Q ss_pred             HHhhhhccccceeeecccHHHHHhcCCCC-CeEEEEecCCCCc-----------ccc---cC-CCCCHHHHHHHHhhcCC
Q psy7942          87 FNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAIFKKFDEGR-----------VNY---EG-PASDEAALRKFLSTQSL  150 (216)
Q Consensus        87 ~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~-----------~~y---~G-~~~~~~~l~~fi~~~~~  150 (216)
                            +||     ...+++++.+|+|.. |+|++|++.....           ..|   .| .+ +.+.|.+||.+..-
T Consensus        86 ------kvD-----~d~~~~la~~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~-~ae~la~fi~~~t~  153 (178)
T 3ga4_A           86 ------TVD-----VNEVPQLVKDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAE-NTLQFGDFLAKILN  153 (178)
T ss_dssp             ------EEE-----TTTCHHHHHHTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTT-CHHHHHHHHHHHHT
T ss_pred             ------EEE-----CccCHHHHHHcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCc-CHHHHHHHHHHhcC
Confidence                  666     777899999999987 9999999764322           345   35 66 89999999988654


Q ss_pred             CceeeeCcchHH
Q psy7942         151 PLVVEFNHETAQ  162 (216)
Q Consensus       151 P~v~~~~~~~~~  162 (216)
                      +.+.-..+-++.
T Consensus       154 ~~i~I~rp~ny~  165 (178)
T 3ga4_A          154 ISITVPQAFNVQ  165 (178)
T ss_dssp             CCCCCCCSCC--
T ss_pred             CCccccCCCChH
Confidence            444333333443

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=98.50  E-value=1e-06  Score=62.82  Aligned_cols=100  Identities=18%  Similarity=0.197  Sum_probs=75.7

Q ss_pred             CCCceeecCHHHHHHh-HhCCCeEEEEEecCCC---hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeee
Q psy7942          27 GPPAKEFTSVDEIKAF-IADSKVVVAGLFKDAS---SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVT  101 (216)
Q Consensus        27 ~~~v~~l~s~~~~~~~-~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      +..+..++ .+++++. ++.+++++|.|+.+||   ....+.|.+++..+ +.+.|.              .++     .
T Consensus         6 ~~~v~~l~-~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~--------------~v~-----~   65 (115)
T 1thx_A            6 SKGVITIT-DAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVV--------------KLE-----I   65 (115)
T ss_dssp             CCSEEECC-GGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEE--------------EEE-----S
T ss_pred             cCceEEee-ccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEE--------------EEE-----c
Confidence            34566775 5777765 4678899999999997   45567888889888 468887              444     5


Q ss_pred             cccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         102 STNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       102 t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ..+++++++|++.. |++++|+++ .....|.|.. +.+.|.+||...
T Consensus        66 ~~~~~~~~~~~v~~~Pt~~~~~~G-~~~~~~~g~~-~~~~l~~~l~~~  111 (115)
T 1thx_A           66 DPNPTTVKKYKVEGVPALRLVKGE-QILDSTEGVI-SKDKLLSFLDTH  111 (115)
T ss_dssp             TTCHHHHHHTTCCSSSEEEEEETT-EEEEEEESCC-CHHHHHHHHHHH
T ss_pred             CCCHHHHHHcCCCceeEEEEEcCC-EEEEEecCCC-CHHHHHHHHHHH
Confidence            66788999999986 999999642 2234578988 899999999764

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=98.50  E-value=1.1e-06  Score=62.72  Aligned_cols=97  Identities=14%  Similarity=0.220  Sum_probs=73.2

Q ss_pred             ceeecCHHHHHHhHhC---CCeEEEEEecCCC---hhHHHHHHHHHhh--CCCceEEecchhhHHHHhhhhccccceeee
Q psy7942          30 AKEFTSVDEIKAFIAD---SKVVVAGLFKDAS---SELAKTFNEIASK--VDDLVFDASSELAKTFNEIASKVDDLVFVT  101 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~---~~v~~V~f~~~~~---~~~~~~f~~~A~~--~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      +..|++.+++++.+.+   +++++|.|+.+||   ....+.+.+++..  .+++.|.              .++     .
T Consensus         2 v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~--------------~vd-----~   62 (112)
T 3d6i_A            2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFL--------------SID-----A   62 (112)
T ss_dssp             EEEECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEE--------------EEE-----T
T ss_pred             ccccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEE--------------EEe-----c
Confidence            5678888999999876   8899999999997   4557788888888  4678887              454     5


Q ss_pred             cccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         102 STNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       102 t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ..+++++++|++.. |++++|+++ +....+.|..  ...|.+||...
T Consensus        63 ~~~~~~~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~--~~~l~~~l~~~  107 (112)
T 3d6i_A           63 DENSEISELFEISAVPYFIIIHKG-TILKELSGAD--PKEYVSLLEDC  107 (112)
T ss_dssp             TTCHHHHHHTTCCSSSEEEEEETT-EEEEEECSCC--HHHHHHHHHHH
T ss_pred             ccCHHHHHHcCCCcccEEEEEECC-EEEEEecCCC--HHHHHHHHHHH
Confidence            56788999999986 999999742 2233467764  45699998754

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=98.50  E-value=5.7e-07  Score=69.74  Aligned_cols=108  Identities=16%  Similarity=0.180  Sum_probs=78.4

Q ss_pred             HHHHHHHhhhCCCceeecCHHHHHHhHh--CCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhh
Q psy7942          17 DIVNWLLKKTGPPAKEFTSVDEIKAFIA--DSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEI   90 (216)
Q Consensus        17 ~iv~~l~~~~~~~v~~l~s~~~~~~~~~--~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~   90 (216)
                      +|...+....   +..|.+.+++++.+.  ++++++|-|+++||.   ...+.|.++|.++ +.+.|+            
T Consensus        13 ~~~~~~~s~m---v~~l~t~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~------------   77 (160)
T 2av4_A           13 GLVPRGSSFM---LQHLNSGWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIY------------   77 (160)
T ss_dssp             ---------C---CEECCSHHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEE------------
T ss_pred             cccccchhhh---hhccCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEE------------
Confidence            4444444432   678999999987663  688999999999985   4467899999998 568888            


Q ss_pred             hhccccceeeecccHHHHHhcCCCC-CeEEEEecCCCCcc----------cccCCCCCHHHHHHHHhhc
Q psy7942          91 ASKVDDLVFVTSTNADILAEYSVDD-DTVAIFKKFDEGRV----------NYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus        91 ~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~----------~y~G~~~~~~~l~~fi~~~  148 (216)
                        ++|     ...+++++++|+|.. ||+++|++.  ...          ...|...+.+.|.++|...
T Consensus        78 --kVD-----VDe~~e~a~~y~V~siPT~~fFk~G--~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~  137 (160)
T 2av4_A           78 --LVD-----ITEVPDFNTMYELYDPVSVMFFYRN--KHMMIDLGTGNNNKINWPMNNKQEFIDIVETI  137 (160)
T ss_dssp             --EEE-----TTTCCTTTTTTTCCSSEEEEEEETT--EEEEEECSSSCCSCBCSCCCCHHHHHHHHHHH
T ss_pred             --EEE-----CCCCHHHHHHcCCCCCCEEEEEECC--EEEEEecCCCCcCeEEeecCCHHHHHHHHHHH
Confidence              666     677889999999986 999999963  232          4667762388999998765

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=98.50  E-value=7.9e-07  Score=63.78  Aligned_cols=98  Identities=10%  Similarity=0.234  Sum_probs=73.1

Q ss_pred             eecCHHHHHHhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecccHHHH
Q psy7942          32 EFTSVDEIKAFIADSKVVVAGLFKDAS---SELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADIL  108 (216)
Q Consensus        32 ~l~s~~~~~~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~  108 (216)
                      .+.+.+++ +.+.+++.++|.|+.+||   ....+.+.+++..++++.|.              .+|     ...+++++
T Consensus         6 ~~~~~~~f-~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~--------------~vd-----~~~~~~l~   65 (110)
T 2l6c_A            6 DITTEAGM-AHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQVAIS--------------SVD-----SEARPELM   65 (110)
T ss_dssp             BCGGGCSH-HHHTTCSEEEEEEECSSCSTHHHHHHHHHHHHTTCTTSCEE--------------EEE-----GGGCHHHH
T ss_pred             ecCCHHHH-HHHHcCCCEEEEEECCCCHhHHHHHHHHHHHHHHCCCcEEE--------------EEc-----CcCCHHHH
Confidence            34456777 566678889999999997   45567888888888777777              344     55678899


Q ss_pred             HhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCC
Q psy7942         109 AEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLP  151 (216)
Q Consensus       109 ~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P  151 (216)
                      ++|++.. |++++|+++ +....+.|.. +.+.|.+++....-|
T Consensus        66 ~~~~v~~~Pt~~~~~~G-~~v~~~~G~~-~~~~l~~~~~~~~~~  107 (110)
T 2l6c_A           66 KELGFERVPTLVFIRDG-KVAKVFSGIM-NPRELQALYASIHHH  107 (110)
T ss_dssp             HHTTCCSSCEEEEEESS-SEEEEEESCC-CHHHHHHHHHTC---
T ss_pred             HHcCCcccCEEEEEECC-EEEEEEcCCC-CHHHHHHHHHHHhhh
Confidence            9999986 999999742 3344678988 899999999877543

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=98.50  E-value=5.9e-07  Score=67.77  Aligned_cols=97  Identities=16%  Similarity=0.290  Sum_probs=77.7

Q ss_pred             ceeecCHHHHHHhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccH
Q psy7942          30 AKEFTSVDEIKAFIADSKVVVAGLFKDAS---SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNA  105 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~  105 (216)
                      +..++ .++++..+..+++++|.|+.+||   ....+.|.+++..+ +++.|.              .|+     ...++
T Consensus        40 v~~l~-~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~--------------~vd-----~~~~~   99 (148)
T 3p2a_A           40 VINAT-AETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFV--------------KVN-----TEAEP   99 (148)
T ss_dssp             CEECC-TTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEE--------------EEE-----TTTCH
T ss_pred             ceecC-HHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEE--------------EEE-----CcCCH
Confidence            45554 47888888889999999999998   45677899999988 678887              455     66788


Q ss_pred             HHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         106 DILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       106 ~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      +++++|++.. |++++|+++ +....|.|.. +.+.|.+||...
T Consensus       100 ~l~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~-~~~~l~~~l~~~  141 (148)
T 3p2a_A          100 ALSTRFRIRSIPTIMLYRNG-KMIDMLNGAV-PKAPFDNWLDEQ  141 (148)
T ss_dssp             HHHHHTTCCSSSEEEEEETT-EEEEEESSCC-CHHHHHHHHHHH
T ss_pred             HHHHHCCCCccCEEEEEECC-eEEEEEeCCC-CHHHHHHHHHHH
Confidence            8999999987 999999842 2234588998 999999999864

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=98.49  E-value=1.5e-06  Score=63.15  Aligned_cols=96  Identities=22%  Similarity=0.296  Sum_probs=73.2

Q ss_pred             eeecCHHHHHHh-HhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccH
Q psy7942          31 KEFTSVDEIKAF-IADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNA  105 (216)
Q Consensus        31 ~~l~s~~~~~~~-~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~  105 (216)
                      ....+.+++++. ++++++++|.|+.+||.   ...+.+.+++.++ +++.|.              .++     ...++
T Consensus        15 ~~~~~~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~--------------~vd-----~d~~~   75 (119)
T 1w4v_A           15 FNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMA--------------KVD-----IDDHT   75 (119)
T ss_dssp             EECCSHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEE--------------EEE-----TTTTH
T ss_pred             EEecChhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEE--------------EEe-----CCCCH
Confidence            445567888774 45788999999999984   4566888888887 567777              344     55678


Q ss_pred             HHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942         106 DILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       106 ~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                      +++++|++.. |++++|+++ +....|.|.. +.+.|.+||..
T Consensus        76 ~l~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~-~~~~l~~~l~~  116 (119)
T 1w4v_A           76 DLAIEYEVSAVPTVLAMKNG-DVVDKFVGIK-DEDQLEAFLKK  116 (119)
T ss_dssp             HHHHHTTCCSSSEEEEEETT-EEEEEEESCC-CHHHHHHHHHH
T ss_pred             HHHHHcCCCcccEEEEEeCC-cEEEEEcCCC-CHHHHHHHHHH
Confidence            8999999986 999999642 2234578988 89999999975

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=98.48  E-value=2.1e-06  Score=63.89  Aligned_cols=99  Identities=13%  Similarity=0.233  Sum_probs=76.6

Q ss_pred             CCceeecCHHHHHHhHhC------------CCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhh
Q psy7942          28 PPAKEFTSVDEIKAFIAD------------SKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIA   91 (216)
Q Consensus        28 ~~v~~l~s~~~~~~~~~~------------~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~   91 (216)
                      ..+..+ +.++++..+.+            +++++|.|+.+||.   ...+.+.+++..+ +.+.|.             
T Consensus        22 ~~v~~l-~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~-------------   87 (141)
T 3hxs_A           22 SGTIHL-TRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIY-------------   87 (141)
T ss_dssp             -CCEEC-CHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEE-------------
T ss_pred             CCcccc-cHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEE-------------
Confidence            345566 46788777664            78999999999984   5567888999888 467777             


Q ss_pred             hccccceeeecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942          92 SKVDDLVFVTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus        92 ~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                       .|+     ...+++++++|++.. |++++|.+. +....|.|.. +.+.|.+||...
T Consensus        88 -~v~-----~~~~~~~~~~~~v~~~Pt~~~~~~~-g~~~~~~G~~-~~~~l~~~l~~~  137 (141)
T 3hxs_A           88 -KVN-----VDKEPELARDFGIQSIPTIWFVPMK-GEPQVNMGAL-SKEQLKGYIDKV  137 (141)
T ss_dssp             -EEE-----TTTCHHHHHHTTCCSSSEEEEECSS-SCCEEEESCC-CHHHHHHHHHHT
T ss_pred             -EEE-----CCCCHHHHHHcCCCCcCEEEEEeCC-CCEEEEeCCC-CHHHHHHHHHHH
Confidence             344     566788999999986 999999753 3345789998 999999999865

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=98.47  E-value=8.2e-07  Score=63.23  Aligned_cols=98  Identities=22%  Similarity=0.291  Sum_probs=74.5

Q ss_pred             CceeecCHHHHHHhHhC----CCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeee
Q psy7942          29 PAKEFTSVDEIKAFIAD----SKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVT  101 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~~~----~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      .+..+.+.+++++.+..    +++++|.|+.+||.   ...+.+.+++..++++.|.              .++     .
T Consensus         5 ~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~--------------~v~-----~   65 (113)
T 1ti3_A            5 QVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFL--------------KVD-----V   65 (113)
T ss_dssp             CEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSSEEEE--------------EEE-----T
T ss_pred             ceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCCCcEEE--------------EEE-----c
Confidence            46788889999988874    88999999999984   4566788888888777777              344     5


Q ss_pred             cccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         102 STNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       102 t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ..+++++++|++.. |++++|+++ .....+.| . +.+.|.+||...
T Consensus        66 ~~~~~~~~~~~v~~~Pt~~~~~~G-~~~~~~~g-~-~~~~l~~~l~~~  110 (113)
T 1ti3_A           66 DELKAVAEEWNVEAMPTFIFLKDG-KLVDKTVG-A-DKDGLPTLVAKH  110 (113)
T ss_dssp             TTCHHHHHHHHCSSTTEEEEEETT-EEEEEEEC-C-CTTHHHHHHHHH
T ss_pred             cccHHHHHhCCCCcccEEEEEeCC-EEEEEEec-C-CHHHHHHHHHHh
Confidence            56778999999986 999999742 22234567 5 677899988753

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=98.46  E-value=5.8e-07  Score=68.19  Aligned_cols=96  Identities=19%  Similarity=0.184  Sum_probs=76.5

Q ss_pred             eecCHHHHHHhHhCCC-eEEEEEecCCCh-----hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeeccc
Q psy7942          32 EFTSVDEIKAFIADSK-VVVAGLFKDASS-----ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTN  104 (216)
Q Consensus        32 ~l~s~~~~~~~~~~~~-v~~V~f~~~~~~-----~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~  104 (216)
                      .+++ +++++.+.+.+ +++|-|+++||.     ...+.+.++|..+ +.+.|+              +||     ...+
T Consensus        19 ~vt~-~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~--------------KVd-----vDe~   78 (137)
T 2qsi_A           19 LVDE-ATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAA--------------EVA-----AEAE   78 (137)
T ss_dssp             EECT-TTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEE--------------EEC-----GGGH
T ss_pred             ccCH-hHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEE--------------EEE-----CCCC
Confidence            5654 78888887666 999999998883     3678999999999 688898              666     6678


Q ss_pred             HHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcC
Q psy7942         105 ADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQS  149 (216)
Q Consensus       105 ~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~  149 (216)
                      ++++.+|+|.. ||+++||++.. .....|.. ..+.|.+||..+.
T Consensus        79 ~~la~~ygV~siPTlilFkdG~~-v~~~vG~~-~k~~l~~~l~~~l  122 (137)
T 2qsi_A           79 RGLMARFGVAVCPSLAVVQPERT-LGVIAKIQ-DWSSYLAQIGAML  122 (137)
T ss_dssp             HHHHHHHTCCSSSEEEEEECCEE-EEEEESCC-CHHHHHHHHHHHH
T ss_pred             HHHHHHcCCccCCEEEEEECCEE-EEEEeCCC-CHHHHHHHHHHHh
Confidence            89999999986 99999996432 44567887 8889999997653

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=98.46  E-value=1.1e-06  Score=67.48  Aligned_cols=97  Identities=12%  Similarity=0.203  Sum_probs=76.5

Q ss_pred             ceeecCHHHHHHhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccH
Q psy7942          30 AKEFTSVDEIKAFIADSKVVVAGLFKDAS---SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNA  105 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~  105 (216)
                      +..+ +.+++++.++++++++|.|+.+||   ....+.|.+++.++ +.+.|.              .||     ...++
T Consensus        49 ~~~l-~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~--------------~vd-----~~~~~  108 (155)
T 2ppt_A           49 VAGI-DPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLA--------------KID-----TQAHP  108 (155)
T ss_dssp             EEEC-CHHHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEE--------------EEE-----TTTST
T ss_pred             CccC-CHHHHHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEE--------------EEe-----CCccH
Confidence            3455 468888888778899999999998   45677899999888 578887              455     55678


Q ss_pred             HHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         106 DILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       106 ~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      +++++|++.. |++++|+++ .....|.|.. +.+.|.+||...
T Consensus       109 ~l~~~~~i~~~Pt~~~~~~G-~~~~~~~G~~-~~~~l~~~l~~~  150 (155)
T 2ppt_A          109 AVAGRHRIQGIPAFILFHKG-RELARAAGAR-PASELVGFVRGK  150 (155)
T ss_dssp             HHHHHTTCCSSSEEEEEETT-EEEEEEESCC-CHHHHHHHHHHH
T ss_pred             HHHHHcCCCcCCEEEEEeCC-eEEEEecCCC-CHHHHHHHHHHH
Confidence            8999999986 999999742 2234578988 899999999864

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=1e-06  Score=64.36  Aligned_cols=103  Identities=13%  Similarity=0.253  Sum_probs=77.6

Q ss_pred             CceeecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhCC--CceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          29 PAKEFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKVD--DLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~--~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      .+..++ .++++++++..  ++|.|+.+||.   ...+.|.+++..+.  .+.|.              .+|     ...
T Consensus         8 ~v~~l~-~~~f~~~~~~~--vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~--------------~vd-----~~~   65 (126)
T 1x5e_A            8 NVRVIT-DENWRELLEGD--WMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIA--------------KVD-----VTE   65 (126)
T ss_dssp             SEEECC-TTTHHHHTSSE--EEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEE--------------EEE-----TTT
T ss_pred             ccEEec-HHHHHHHhCCC--EEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEE--------------EEE-----CcC
Confidence            355664 57788877543  78899999984   45678888888773  67777              454     566


Q ss_pred             cHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCCceeee
Q psy7942         104 NADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEF  156 (216)
Q Consensus       104 ~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~  156 (216)
                      +++++++|++.. |++++|++  +....|.|.. +.+.|.+||.....+.+.++
T Consensus        66 ~~~~~~~~~v~~~Pt~~~~~~--G~~~~~~G~~-~~~~l~~~l~~~~~~~~~~~  116 (126)
T 1x5e_A           66 QPGLSGRFIINALPTIYHCKD--GEFRRYQGPR-TKKDFINFISDKEWKSIEPV  116 (126)
T ss_dssp             CHHHHHHTTCCSSSEEEEEET--TEEEECCSCC-CHHHHHHHHHTCGGGGSCEE
T ss_pred             CHHHHHHcCCcccCEEEEEeC--CeEEEeecCC-CHHHHHHHHHHHhhccCCCc
Confidence            788999999986 99999974  3356789988 99999999998765555444

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=98.44  E-value=1.1e-06  Score=63.67  Aligned_cols=98  Identities=10%  Similarity=0.174  Sum_probs=74.7

Q ss_pred             CceeecCHHHH-HHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          29 PAKEFTSVDEI-KAFIADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        29 ~v~~l~s~~~~-~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      .+..++ .+++ +.+++++++++|.|+.+||.   ...+.|.+++..+ +++.|+              .+|     ...
T Consensus         4 ~v~~l~-~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~--------------~vd-----~~~   63 (122)
T 3aps_A            4 ASIDLT-PQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAG--------------KVD-----CQA   63 (122)
T ss_dssp             CSEECC-HHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEE--------------EEE-----TTT
T ss_pred             chhcCC-HHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEE--------------EEe-----CcC
Confidence            355665 5777 45777889999999999984   5567888888887 478887              455     566


Q ss_pred             cHHHHHhcCCCC-CeEEEEecCCCCcccccCC----CCCHHHHHHHHhhc
Q psy7942         104 NADILAEYSVDD-DTVAIFKKFDEGRVNYEGP----ASDEAALRKFLSTQ  148 (216)
Q Consensus       104 ~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~----~~~~~~l~~fi~~~  148 (216)
                      +++++++|++.. |++++|++... ...+.|.    . +.+.|.+||...
T Consensus        64 ~~~~~~~~~v~~~Pt~~~~~~~~~-~~~~~g~~~~~~-~~~~l~~~l~~~  111 (122)
T 3aps_A           64 YPQTCQKAGIKAYPSVKLYQYERA-KKSIWEEQINSR-DAKTIAALIYGK  111 (122)
T ss_dssp             CHHHHHHTTCCSSSEEEEEEEEGG-GTEEEEEEECCS-CHHHHHHHHHHH
T ss_pred             CHHHHHHcCCCccceEEEEeCCCc-cceeeccccCcC-CHHHHHHHHHHH
Confidence            788999999986 99999986433 4456664    6 889999999764

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=98.44  E-value=1.6e-06  Score=61.25  Aligned_cols=97  Identities=19%  Similarity=0.345  Sum_probs=72.8

Q ss_pred             ceeecCHHHHHH-hHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeeccc
Q psy7942          30 AKEFTSVDEIKA-FIADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTN  104 (216)
Q Consensus        30 v~~l~s~~~~~~-~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~  104 (216)
                      +..++. ++++. .++++++++|.|+.+||.   ...+.+.+++..+ +.+.|.              .++     ...+
T Consensus         4 v~~l~~-~~f~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~--------------~v~-----~~~~   63 (108)
T 2trx_A            4 IIHLTD-DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVA--------------KLN-----IDQN   63 (108)
T ss_dssp             EEECCT-TTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEE--------------EEE-----TTTC
T ss_pred             ceecch-hhHHHHHHhcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEE--------------EEE-----CCCC
Confidence            455654 66664 456788999999999984   4567888888888 567777              344     5567


Q ss_pred             HHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         105 ADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       105 ~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ++++++|++.. |++++|+++ +....+.|.. +.+.|.+||...
T Consensus        64 ~~~~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~-~~~~l~~~l~~~  106 (108)
T 2trx_A           64 PGTAPKYGIRGIPTLLLFKNG-EVAATKVGAL-SKGQLKEFLDAN  106 (108)
T ss_dssp             TTHHHHTTCCSSSEEEEEETT-EEEEEEESCC-CHHHHHHHHHHH
T ss_pred             HHHHHHcCCcccCEEEEEeCC-EEEEEEecCC-CHHHHHHHHHHh
Confidence            78999999986 999999642 2234578988 899999999753

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=98.42  E-value=2.9e-06  Score=61.44  Aligned_cols=99  Identities=21%  Similarity=0.248  Sum_probs=74.7

Q ss_pred             CCceeecCHHHHHHhHh----CCCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceee
Q psy7942          28 PPAKEFTSVDEIKAFIA----DSKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFV  100 (216)
Q Consensus        28 ~~v~~l~s~~~~~~~~~----~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~  100 (216)
                      .++..+.+.++++..+.    .+++++|.|+.+||.   ...+.|.+++.++.++.|.              .++     
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~--------------~vd-----   72 (122)
T 2vlu_A           12 AEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPNAVFL--------------KVD-----   72 (122)
T ss_dssp             CCCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEE--------------EEE-----
T ss_pred             CcceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCcEEE--------------EEE-----
Confidence            34456667889988775    478999999999984   4567888889888668887              444     


Q ss_pred             ecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         101 TSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       101 ~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ...+++++++|++.. |++++|+++ +....+.|..  .+.|.+||...
T Consensus        73 ~~~~~~~~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~--~~~l~~~l~~~  118 (122)
T 2vlu_A           73 VDELKPIAEQFSVEAMPTFLFMKEG-DVKDRVVGAI--KEELTAKVGLH  118 (122)
T ss_dssp             TTTCHHHHHHTTCCSSSEEEEEETT-EEEEEEESSC--HHHHHHHHHHH
T ss_pred             CCCCHHHHHHcCCCcccEEEEEeCC-EEEEEEeCcC--HHHHHHHHHHH
Confidence            556788999999986 999999742 2234567765  78899998764

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=98.41  E-value=1.2e-05  Score=65.75  Aligned_cols=128  Identities=20%  Similarity=0.330  Sum_probs=86.7

Q ss_pred             CceeecCHHHHHHhH-hCCCeEEEEEecCCCh---hHHHHHHHHHhhCC----CceEEecchhhHHHHhhhhccccceee
Q psy7942          29 PAKEFTSVDEIKAFI-ADSKVVVAGLFKDASS---ELAKTFNEIASKVD----DLVFDASSELAKTFNEIASKVDDLVFV  100 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~-~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~----~~~F~~~~~~~~~~~~~~~~~~~~~~~  100 (216)
                      ++..|++ ++++..+ +.+++++|.|+.+||.   ...+.|.++|..+.    .+.|+              .||     
T Consensus        13 ~v~~l~~-~~f~~~i~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~--------------~vd-----   72 (244)
T 3q6o_A           13 PLTLLQA-DTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLA--------------ALD-----   72 (244)
T ss_dssp             SSEEECT-TTHHHHHSSCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEE--------------EEE-----
T ss_pred             CceeCCh-hhHHHHHhhCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEE--------------EEe-----
Confidence            4667765 6777655 4569999999999984   55678999998883    57777              344     


Q ss_pred             e--cccHHHHHhcCCCC-CeEEEEecCCC----CcccccCCCCCHHHHHHHHhhc----C------CCceeeeCcchHHH
Q psy7942         101 T--STNADILAEYSVDD-DTVAIFKKFDE----GRVNYEGPASDEAALRKFLSTQ----S------LPLVVEFNHETAQK  163 (216)
Q Consensus       101 ~--t~~~~v~~~~~v~~-p~i~~~~~~de----~~~~y~G~~~~~~~l~~fi~~~----~------~P~v~~~~~~~~~~  163 (216)
                      +  ..+++++++|++.. |++++|++...    ....+.| . +.+.|.+||...    .      .|.+...+.+++..
T Consensus        73 ~~~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~g~~~~~~g-~-~~~~l~~~i~~~l~~~~~~~p~~~p~l~~~~~~~l~~  150 (244)
T 3q6o_A           73 CAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAG-A-DVQTLRERLIDALESHHDTWPPACPPLEPAXLEEIDG  150 (244)
T ss_dssp             TTSTTTHHHHHHTTCCSSSEEEEECTTCCSSSCEECCCTT-C-CHHHHHHHHHHHHHTCTTSCCTTSCCCSCCCHHHHHT
T ss_pred             CCchhhHHHHHHcCCCccCEEEEEeCCCcCCCCeeEecCC-C-CHHHHHHHHHHHHHhccccCCCCCCCcccccHHHHHH
Confidence            4  34678999999986 99999996432    1224555 5 888888888653    1      23345556677777


Q ss_pred             hhccCCcceEEEEEe
Q psy7942         164 IFGGEIKSHLLVFFS  178 (216)
Q Consensus       164 ~~~~~~~~~lllf~~  178 (216)
                      ++...-...+.+++.
T Consensus       151 ~~~~~~~~~~al~f~  165 (244)
T 3q6o_A          151 FFARNNEEYLALIFE  165 (244)
T ss_dssp             HHHHCCCSEEEEEEE
T ss_pred             HhhcCCCceEEEEEE
Confidence            775432334444433

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=98.39  E-value=4.6e-06  Score=62.06  Aligned_cols=101  Identities=13%  Similarity=0.195  Sum_probs=75.6

Q ss_pred             CCCceeecCHHHHHHhHhCCCeEEEEEecCCC--hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          27 GPPAKEFTSVDEIKAFIADSKVVVAGLFKDAS--SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        27 ~~~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~--~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      .|.+..++ .+++++++++..+++|.|+.++.  ....+.|.++|+++ +.+.|+              .+|     ...
T Consensus         5 ~plv~~~t-~~~f~~~~~~~~pv~v~f~a~~~~c~~~~p~l~~~A~~~~gk~~f~--------------~vd-----~d~   64 (133)
T 2djk_A            5 SPLIGEIG-PETYSDYMSAGIPLAYIFAETAEERKELSDKLKPIAEAQRGVINFG--------------TID-----AKA   64 (133)
T ss_dssp             CCCSEECC-HHHHHHHHHTTSCEEEEECSCSSSHHHHHHHHHHHHHSSTTTSEEE--------------EEC-----TTT
T ss_pred             cCceeccC-hHHHHHHhcCCCCEEEEEecChhhHHHHHHHHHHHHHHhCCeEEEE--------------EEc-----hHH
Confidence            35566664 67888888877788888887732  45678999999999 679998              455     555


Q ss_pred             cHHHHHhcCCCC---CeEEEEecCCCCccccc--CCCCCHHHHHHHHhhc
Q psy7942         104 NADILAEYSVDD---DTVAIFKKFDEGRVNYE--GPASDEAALRKFLSTQ  148 (216)
Q Consensus       104 ~~~v~~~~~v~~---p~i~~~~~~de~~~~y~--G~~~~~~~l~~fi~~~  148 (216)
                      ++.+++.|++..   |++++|+..++....+.  |.+ +.+.|.+||...
T Consensus        65 ~~~~a~~~gi~~~~iPtl~i~~~~~g~~~~~~~~g~~-~~~~l~~fi~~~  113 (133)
T 2djk_A           65 FGAHAGNLNLKTDKFPAFAIQEVAKNQKFPFDQEKEI-TFEAIKAFVDDF  113 (133)
T ss_dssp             TGGGTTTTTCCSSSSSEEEEECTTTCCBCCCCSSSCC-CHHHHHHHHHHH
T ss_pred             hHHHHHHcCCCcccCCEEEEEecCcCcccCCCCcccc-CHHHHHHHHHHH
Confidence            677899999974   99999995223233443  888 899999999864

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=98.37  E-value=4.5e-06  Score=62.04  Aligned_cols=98  Identities=16%  Similarity=0.270  Sum_probs=75.0

Q ss_pred             CceeecCHHHHHHhHh------------CCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhh
Q psy7942          29 PAKEFTSVDEIKAFIA------------DSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIAS   92 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~~------------~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~   92 (216)
                      .+..++ .+++.+.+.            ++++++|.|+.+||.   ...+.|.+++.++ +.+.|.              
T Consensus        10 ~v~~l~-~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~--------------   74 (136)
T 2l5l_A           10 KVIHLT-KAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIY--------------   74 (136)
T ss_dssp             SEEEEC-HHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEE--------------
T ss_pred             ceEEec-chHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEE--------------
Confidence            355664 578877664            467899999999984   4567888889888 568887              


Q ss_pred             ccccceeeecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942          93 KVDDLVFVTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus        93 ~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      .++     ...+++++++|++.. |++++|.+ ++....|.|.. +.+.|.+||...
T Consensus        75 ~vd-----~~~~~~l~~~~~v~~~Pt~~~~~~-~G~~~~~~G~~-~~~~l~~~l~~~  124 (136)
T 2l5l_A           75 KVD-----TEKEQELAGAFGIRSIPSILFIPM-EGKPEMAQGAM-PKASFKKAIDEF  124 (136)
T ss_dssp             EEE-----TTTCHHHHHHTTCCSSCEEEEECS-SSCCEEEESCC-CHHHHHHHHHHH
T ss_pred             EEe-----CCCCHHHHHHcCCCCCCEEEEECC-CCcEEEEeCCC-CHHHHHHHHHHH
Confidence            444     556788999999986 99999943 23344788998 999999999875

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=98.36  E-value=4.7e-06  Score=58.68  Aligned_cols=97  Identities=21%  Similarity=0.285  Sum_probs=72.3

Q ss_pred             ceeecCHHHHHHhH-hCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeeccc
Q psy7942          30 AKEFTSVDEIKAFI-ADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTN  104 (216)
Q Consensus        30 v~~l~s~~~~~~~~-~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~  104 (216)
                      +..+ +.+++++.+ +++++++|.|+.+||.   ...+.+.+++..+ +.+.|.              .++     ...+
T Consensus         3 v~~l-~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~--------------~v~-----~~~~   62 (107)
T 1dby_A            3 AGAV-NDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCV--------------KLN-----TDES   62 (107)
T ss_dssp             CEEE-CHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEE--------------EEE-----TTTC
T ss_pred             cEec-cHHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEE--------------EEE-----CCCC
Confidence            4455 457777754 5688999999999984   4567888888888 467777              344     5567


Q ss_pred             HHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         105 ADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       105 ~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ++++++|++.. |++++|+++ .....+.|.. +.+.|.+||...
T Consensus        63 ~~~~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~-~~~~l~~~l~~~  105 (107)
T 1dby_A           63 PNVASEYGIRSIPTIMVFKGG-KKCETIIGAV-PKATIVQTVEKY  105 (107)
T ss_dssp             HHHHHHHTCCSSCEEEEESSS-SEEEEEESCC-CHHHHHHHHHHH
T ss_pred             HHHHHHCCCCcCCEEEEEeCC-EEEEEEeCCC-CHHHHHHHHHHH
Confidence            88999999986 999999642 2234578888 889999998753

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=98.35  E-value=3.6e-06  Score=61.19  Aligned_cols=103  Identities=17%  Similarity=0.251  Sum_probs=75.8

Q ss_pred             CCceeec-CHHHHHH-hHhCCCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeec
Q psy7942          28 PPAKEFT-SVDEIKA-FIADSKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTS  102 (216)
Q Consensus        28 ~~v~~l~-s~~~~~~-~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t  102 (216)
                      +.+..++ +.+++++ +.+++++++|.|+.+||.   ...+.+.+++..++.+.|.              .++     ..
T Consensus         3 ~~v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~--------------~vd-----~~   63 (118)
T 2f51_A            3 DPIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKDVTFI--------------KVD-----VD   63 (118)
T ss_dssp             CCSEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEE--------------EEE-----TT
T ss_pred             CcceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCeEEE--------------EEE-----CC
Confidence            4567776 8889984 556788999999999984   4566888888888778887              454     55


Q ss_pred             ccHHHHHhcCCCC-CeEEEEecC---CCCcccccCCCCCHHHHHHHHhhcCCC
Q psy7942         103 TNADILAEYSVDD-DTVAIFKKF---DEGRVNYEGPASDEAALRKFLSTQSLP  151 (216)
Q Consensus       103 ~~~~v~~~~~v~~-p~i~~~~~~---de~~~~y~G~~~~~~~l~~fi~~~~~P  151 (216)
                      .+++++++|++.. |++++|++.   ......+.|..  ...|.+.|..+..|
T Consensus        64 ~~~~~~~~~~i~~~Pt~~~~~~~~~~G~~~~~~~G~~--~~~l~~~~~~~~~~  114 (118)
T 2f51_A           64 KNGNAADAYGVSSIPALFFVKKEGNEIKTLDQFVGAD--VSRIKADIEKFKHH  114 (118)
T ss_dssp             TCHHHHHHTTCCSSSEEEEEEEETTEEEEEEEEESCC--HHHHHHHHHHHC--
T ss_pred             CCHHHHHhcCCCCCCEEEEEeCCCCcceEEEeecCCC--HHHHHHHHHHhhhc
Confidence            6788999999986 999999851   11123467765  45699999887654

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=98.34  E-value=2.2e-06  Score=63.41  Aligned_cols=98  Identities=18%  Similarity=0.328  Sum_probs=73.7

Q ss_pred             CceeecCHHHHHH-hHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          29 PAKEFTSVDEIKA-FIADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        29 ~v~~l~s~~~~~~-~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      .+..++ .+++++ +++.+++++|.|+.+||.   ...+.|.+++..+ +++.|.              .++     ...
T Consensus        23 ~v~~l~-~~~f~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~--------------~vd-----~~~   82 (128)
T 2o8v_B           23 KIIHLT-DDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVA--------------KLN-----IDQ   82 (128)
T ss_dssp             CSEEEC-TTTHHHHTTTCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEE--------------EEE-----TTT
T ss_pred             ccEecC-hhhHHHHHHhcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEE--------------EEE-----CCC
Confidence            356665 467764 456789999999999984   4567888999888 467777              344     556


Q ss_pred             cHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         104 NADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       104 ~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      +++++++|++.. |++++|+++ +....+.|.. +.+.|.+||...
T Consensus        83 ~~~l~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~-~~~~l~~~l~~~  126 (128)
T 2o8v_B           83 NPGTAPKYGIRGIPTLLLFKNG-EVAATKVGAL-SKGQLKEFLDAN  126 (128)
T ss_dssp             CCTTSGGGTCCSSSEEEEEETT-EEEEEEESCC-CHHHHHHHHHHH
T ss_pred             CHHHHHHcCCCccCEEEEEeCC-EEEEEEcCCC-CHHHHHHHHHHh
Confidence            778899999986 999999642 2234578988 899999999753

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=98.33  E-value=4.3e-06  Score=63.63  Aligned_cols=98  Identities=15%  Similarity=0.195  Sum_probs=75.9

Q ss_pred             ceeecCHHHHHHhH--hCCCeEEEEEecCCCh---hHHHHHHHHHhhCC-CceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          30 AKEFTSVDEIKAFI--ADSKVVVAGLFKDASS---ELAKTFNEIASKVD-DLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        30 v~~l~s~~~~~~~~--~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~-~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      +..+.+.++++..+  .++++++|.|+++||.   .+.+.+.+++.++. .+.|.              .||     ...
T Consensus         5 l~~i~~~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~--------------~vd-----~d~   65 (149)
T 3gix_A            5 LPKLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIY--------------LVD-----VDQ   65 (149)
T ss_dssp             CCEECSHHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEE--------------EEE-----TTT
T ss_pred             eeecCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEE--------------EEE-----CCc
Confidence            34677889999887  4589999999999984   55678889998884 47777              455     567


Q ss_pred             cHHHHHhcCCCC-CeEEEEecCCCCc---------ccccC-CCCCHHHHHHHHhhc
Q psy7942         104 NADILAEYSVDD-DTVAIFKKFDEGR---------VNYEG-PASDEAALRKFLSTQ  148 (216)
Q Consensus       104 ~~~v~~~~~v~~-p~i~~~~~~de~~---------~~y~G-~~~~~~~l~~fi~~~  148 (216)
                      +++++++|++.. |++++++++.. .         ..+.| .. +.+.|.++|...
T Consensus        66 ~~~l~~~~~v~~~Pt~~~~~~G~~-v~~~~g~~~~~~~~G~~~-~~~~l~~~l~~~  119 (149)
T 3gix_A           66 TAVYTQYFDISYIPSTVFFFNGQH-MKVDYGSPDHTKFVGSFK-TKQDFIDLIEVI  119 (149)
T ss_dssp             CCHHHHHTTCCSSSEEEEEETTEE-EEEECSSSCCSCEESCCS-SHHHHHHHHHHH
T ss_pred             CHHHHHHcCCCccCeEEEEECCeE-EEeecCCCCCCeEeeecC-CHHHHHHHHHHH
Confidence            788999999986 99999985321 2         35678 55 889999998764

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=98.33  E-value=3.4e-06  Score=69.61  Aligned_cols=122  Identities=16%  Similarity=0.128  Sum_probs=86.4

Q ss_pred             CCcccC-CCCCChHHHHHHHHhhhCCCceeecCHHHHHHhHhCCCeEEEEEecCCC--h----hHHHHHHHHHhhC-CC-
Q psy7942           4 CLPGER-RGGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDAS--S----ELAKTFNEIASKV-DD-   74 (216)
Q Consensus         4 g~~~~Y-~G~Rta~~iv~~l~~~~~~~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~--~----~~~~~f~~~A~~~-~~-   74 (216)
                      ..+..| .|.++.++|.+|+....-|.+.+++. +.+..+ .+.+++++.+..+.+  .    .....+.++|+++ +. 
T Consensus        89 e~~~~y~~g~~~~~~l~~fi~~~~~Plv~e~t~-~n~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~  166 (252)
T 2h8l_A           89 DKTVAYTEQKMTSGKIKKFIQENIFGICPHMTE-DNKDLI-QGKDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAG  166 (252)
T ss_dssp             CSEEECCCSSCCHHHHHHHHHHHSSCSSCEECT-TTHHHH-SSSSEEEEEECCBTTTBHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccccCCCCcCHHHHHHHHHhcccCCeeeccc-ccHhhh-cCCCeEEEEeecchhhcchhHHHHHHHHHHHHHHccccC
Confidence            356789 99999999999999999999999975 455565 456666555443322  1    3466888899888 44 


Q ss_pred             --ceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCC--C---CCeEEEEecCCCCcccccCCCCCHHH--HHHHH
Q psy7942          75 --LVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSV--D---DDTVAIFKKFDEGRVNYEGPASDEAA--LRKFL  145 (216)
Q Consensus        75 --~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v--~---~p~i~~~~~~de~~~~y~G~~~~~~~--l~~fi  145 (216)
                        +.|++              +|     ......+++.+|+  +   .|+|+++.. +.....+.+++ +.+.  |.+|+
T Consensus       167 ~~~~F~~--------------~d-----~~~~~~~~~~fgl~~~~~~~P~v~i~~~-~~~ky~~~~~~-t~~~~~i~~F~  225 (252)
T 2h8l_A          167 HKLNFAV--------------AS-----RKTFSHELSDFGLESTAGEIPVVAIRTA-KGEKFVMQEEF-SRDGKALERFL  225 (252)
T ss_dssp             CCCEEEE--------------EE-----TTTTHHHHGGGTCCCCSCSSCEEEEECT-TSCEEECCSCC-CTTSHHHHHHH
T ss_pred             ceEEEEE--------------Ec-----hHHHHHHHHHcCCCCccCCCCEEEEEeC-cCcEecCCccc-CcchHHHHHHH
Confidence              88883              22     2333457788888  3   399999864 33344567788 7777  99999


Q ss_pred             hhc
Q psy7942         146 STQ  148 (216)
Q Consensus       146 ~~~  148 (216)
                      ...
T Consensus       226 ~~~  228 (252)
T 2h8l_A          226 QDY  228 (252)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            874

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=98.31  E-value=4.7e-06  Score=58.28  Aligned_cols=95  Identities=18%  Similarity=0.302  Sum_probs=70.0

Q ss_pred             eeecCHHHHHHhH-hCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccH
Q psy7942          31 KEFTSVDEIKAFI-ADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNA  105 (216)
Q Consensus        31 ~~l~s~~~~~~~~-~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~  105 (216)
                      ..++ .++++..+ +++++++|.|+.+||.   ...+.+.+++.++ +.+.|.              .++     ...++
T Consensus         3 ~~~~-~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~--------------~v~-----~~~~~   62 (105)
T 1fb6_A            3 QDVN-DSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVY--------------KLN-----TDEAP   62 (105)
T ss_dssp             EECC-TTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEE--------------EEE-----TTTCH
T ss_pred             eech-hhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEE--------------EEc-----CcchH
Confidence            3444 35666644 4678999999999984   4567888888888 457777              344     55677


Q ss_pred             HHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942         106 DILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       106 ~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                      +++++|++.. |++++++++ .....+.|.. +.+.|.+||..
T Consensus        63 ~~~~~~~v~~~Pt~~~~~~g-~~~~~~~G~~-~~~~l~~~l~~  103 (105)
T 1fb6_A           63 GIATQYNIRSIPTVLFFKNG-ERKESIIGAV-PKSTLTDSIEK  103 (105)
T ss_dssp             HHHHHTTCCSSSEEEEEETT-EEEEEEEECC-CHHHHHHHHHH
T ss_pred             HHHHhCCCCcccEEEEEeCC-eEEEEEecCC-CHHHHHHHHHh
Confidence            8999999986 999999742 2234577888 88999999875

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=98.29  E-value=5.1e-06  Score=68.42  Aligned_cols=117  Identities=14%  Similarity=0.163  Sum_probs=87.7

Q ss_pred             cccCCCCCChHHHHHHHHhhh---CCCceeecCHHHHHHhHh-CCCeEEEEEecCCC---hhHHHHHHHHHhhC-----C
Q psy7942           6 PGERRGGRTAEDIVNWLLKKT---GPPAKEFTSVDEIKAFIA-DSKVVVAGLFKDAS---SELAKTFNEIASKV-----D   73 (216)
Q Consensus         6 ~~~Y~G~Rta~~iv~~l~~~~---~~~v~~l~s~~~~~~~~~-~~~v~~V~f~~~~~---~~~~~~f~~~A~~~-----~   73 (216)
                      ...|.|.++...+..|+....   +++. .+ +.+..+.+.+ ..++.++.|+.+||   ....+.+.++|..+     +
T Consensus        96 ~~~~~G~~~~~~l~~fv~~~l~~~~~~~-~l-~~~~~~~~~~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~  173 (243)
T 2hls_A           96 EVRWTGIPAGEEIRALVEVIMRLSEDES-GL-EDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNP  173 (243)
T ss_dssp             TEEEESCCCTTHHHHHHHHHHHHHTTCC-CC-CHHHHHHHHHCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCC
T ss_pred             ceeEcCCCcHHHHHHHHHHHHhccCCCC-CC-CHHHHHHHHHcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCC
Confidence            568999999999999887754   3332 23 4455555543 46788888999997   45677888888876     5


Q ss_pred             CceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcC
Q psy7942          74 DLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQS  149 (216)
Q Consensus        74 ~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~  149 (216)
                      ++.|.              .+|     .+.+++++++|++.. |++++  +  + ...|.|.. +.+.|.+||....
T Consensus       174 ~v~~~--------------~vd-----~~~~~~~~~~~~V~~vPt~~i--~--G-~~~~~G~~-~~~~l~~~l~~~~  225 (243)
T 2hls_A          174 VILSE--------------AVE-----AYENPDIADKYGVMSVPSIAI--N--G-YLVFVGVP-YEEDFLDYVKSAA  225 (243)
T ss_dssp             CEEEE--------------EEE-----TTTCHHHHHHTTCCSSSEEEE--T--T-EEEEESCC-CHHHHHHHHHHHH
T ss_pred             cEEEE--------------EEE-----CccCHHHHHHcCCeeeCeEEE--C--C-EEEEeCCC-CHHHHHHHHHHHh
Confidence            67777              455     667889999999976 99988  2  2 34599998 9999999998764

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=98.29  E-value=3.2e-06  Score=61.82  Aligned_cols=95  Identities=15%  Similarity=0.100  Sum_probs=69.8

Q ss_pred             ceeecCHHHHHHhHhCCCeEEEEEecCCChh---HHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecccH-
Q psy7942          30 AKEFTSVDEIKAFIADSKVVVAGLFKDASSE---LAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNA-  105 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~~---~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~-  105 (216)
                      .+.|+|.++++++++++++++|.|+..||+.   ..+.|.+.+.. +++.|+              .||     ...++ 
T Consensus         8 ~~~i~s~e~f~~ii~~~~~vvi~khatwCgpc~~~~~~~e~~~~~-~~v~~~--------------~vd-----Vde~r~   67 (112)
T 3iv4_A            8 AIKLSSIDQFEQVIEENKYVFVLKHSETCPISANAYDQFNKFLYE-RDMDGY--------------YLI-----VQQERD   67 (112)
T ss_dssp             EEECCSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHH-HTCCEE--------------EEE-----GGGGHH
T ss_pred             eeecCCHHHHHHHHhcCCCEEEEEECCcCHhHHHHHHHHHHHhcc-CCceEE--------------EEE-----eecCch
Confidence            4678999999999999999999999999854   45677777765 677777              343     33343 


Q ss_pred             ---HHHHhcCCCC--CeEEEEecCCCCcccccCCCCCHHHHHHHH
Q psy7942         106 ---DILAEYSVDD--DTVAIFKKFDEGRVNYEGPASDEAALRKFL  145 (216)
Q Consensus       106 ---~v~~~~~v~~--p~i~~~~~~de~~~~y~G~~~~~~~l~~fi  145 (216)
                         +++++++|..  |++++|+++..-...-+|.. +.+.|.+.+
T Consensus        68 ~Sn~IA~~~~V~h~sPq~il~k~G~~v~~~SH~~I-~~~~l~~~~  111 (112)
T 3iv4_A           68 LSDYIAKKTNVKHESPQAFYFVNGEMVWNRDHGDI-NVSSLAQAE  111 (112)
T ss_dssp             HHHHHHHHHTCCCCSSEEEEEETTEEEEEEEGGGC-SHHHHHHHT
T ss_pred             hhHHHHHHhCCccCCCeEEEEECCEEEEEeecccc-CHHHHHHhh
Confidence               3899999993  99999996332222235677 778887654

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=98.29  E-value=1.4e-06  Score=64.13  Aligned_cols=108  Identities=19%  Similarity=0.343  Sum_probs=68.9

Q ss_pred             ceeecCHHHHH-HhHhCCCeEEEEEecCCChhHHHHHHHHHhhCCCceEE---ecchhhHHHHhhhhcccc-ceee---e
Q psy7942          30 AKEFTSVDEIK-AFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFD---ASSELAKTFNEIASKVDD-LVFV---T  101 (216)
Q Consensus        30 v~~l~s~~~~~-~~~~~~~v~~V~f~~~~~~~~~~~f~~~A~~~~~~~F~---~~~~~~~~~~~~~~~~~~-~~~~---~  101 (216)
                      +..++. ++++ .+++++++++|.|+.+||....        ++++-.|.   .|+...+.|++++....+ ..++   .
T Consensus         5 v~~l~~-~~f~~~~~~~~k~vlv~F~a~wC~~c~--------~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~   75 (123)
T 1oaz_A            5 IIHLTD-DSFDTDVLKADGAILVDFWAEWCGPIE--------ESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNI   75 (123)
T ss_dssp             CEECCS-TTHHHHTTSCSSEEEEEEECSSCSCBS--------SSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEET
T ss_pred             cEecCh-hhHHHHHHhCCCeEEEEEECCCCcccc--------ccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEEC
Confidence            556654 6666 4567789999999999986111        12233444   566666666665555532 2221   4


Q ss_pred             cccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         102 STNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       102 t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ..+++++++|++.. |++++|+++ +....+.|.. +.+.|.+||...
T Consensus        76 d~~~~l~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~-~~~~l~~~l~~~  121 (123)
T 1oaz_A           76 DQNPGTAPKYGIRGIPTLLLFKNG-EVAATKVGAL-SKGQLKEFLDAN  121 (123)
T ss_dssp             TSCTTTGGGGTCCBSSEEEEEESS-SEEEEEESCC-CHHHHHHHHTTT
T ss_pred             CCCHHHHHHcCCCccCEEEEEECC-EEEEEEeCCC-CHHHHHHHHHHH
Confidence            45678899999986 999999642 2234588988 899999999864

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=98.27  E-value=7.5e-06  Score=60.73  Aligned_cols=99  Identities=16%  Similarity=0.237  Sum_probs=75.5

Q ss_pred             CCceeecCHHHHHHhHh----CCCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceee
Q psy7942          28 PPAKEFTSVDEIKAFIA----DSKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFV  100 (216)
Q Consensus        28 ~~v~~l~s~~~~~~~~~----~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~  100 (216)
                      ..+..+.+.+++++.+.    .+++++|.|+.+||.   ...+.+.+++..+.++.|.              .++     
T Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~--------------~v~-----   84 (139)
T 3d22_A           24 GNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFL--------------VID-----   84 (139)
T ss_dssp             TTCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEE--------------EEE-----
T ss_pred             CcEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEE--------------EEe-----
Confidence            45678888899988774    478899999999984   4567888888888778887              344     


Q ss_pred             ecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         101 TSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       101 ~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ...+++++++|++.. |++++++++ .....+.|.  +.+.|.+||...
T Consensus        85 ~~~~~~~~~~~~v~~~Pt~~~~~~G-~~~~~~~G~--~~~~l~~~l~~~  130 (139)
T 3d22_A           85 VDELSDFSASWEIKATPTFFFLRDG-QQVDKLVGA--NKPELHKKITAI  130 (139)
T ss_dssp             TTTSHHHHHHTTCCEESEEEEEETT-EEEEEEESC--CHHHHHHHHHHH
T ss_pred             CcccHHHHHHcCCCcccEEEEEcCC-eEEEEEeCC--CHHHHHHHHHHH
Confidence            556788999999986 999999742 223345665  578899999765

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=98.27  E-value=2.3e-05  Score=71.56  Aligned_cols=143  Identities=21%  Similarity=0.294  Sum_probs=96.6

Q ss_pred             CceeecCHHHHHHhH-hCCCeEEEEEecCCCh---hHHHHHHHHHhhC-C---CceEEecchhhHHHHhhhhccccceee
Q psy7942          29 PAKEFTSVDEIKAFI-ADSKVVVAGLFKDASS---ELAKTFNEIASKV-D---DLVFDASSELAKTFNEIASKVDDLVFV  100 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~-~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~---~~~F~~~~~~~~~~~~~~~~~~~~~~~  100 (216)
                      .+..++. ++++..+ +++++++|.|+++||.   ...+.|.++|..+ +   .+.|+              .||     
T Consensus        13 ~V~~Lt~-~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~--------------~VD-----   72 (519)
T 3t58_A           13 PLTLLDA-DSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLA--------------VLD-----   72 (519)
T ss_dssp             SSEEECT-TTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEE--------------EEE-----
T ss_pred             CcEECCh-HHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEE--------------EEE-----
Confidence            4566654 6777755 5679999999999984   5677899999887 3   57777              444     


Q ss_pred             ec--ccHHHHHhcCCCC-CeEEEEecCCC---CcccccCCCCCHHHHHHHHhhc----C------CCceeeeCcchHHHh
Q psy7942         101 TS--TNADILAEYSVDD-DTVAIFKKFDE---GRVNYEGPASDEAALRKFLSTQ----S------LPLVVEFNHETAQKI  164 (216)
Q Consensus       101 ~t--~~~~v~~~~~v~~-p~i~~~~~~de---~~~~y~G~~~~~~~l~~fi~~~----~------~P~v~~~~~~~~~~~  164 (216)
                      ++  .+++++++|+|.. |++++|+++..   ....+.|.. +.+.|.+||...    .      .|.+..++.+++..+
T Consensus        73 ~d~d~~~~l~~~~~V~~~PTl~~f~~g~~~G~~~~~~~g~~-~~~~L~~~l~~~l~~~~~~~P~~~p~l~~it~~~l~~~  151 (519)
T 3t58_A           73 CAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGA-NVQTLRMRLIDALESHRDTWPPACPPLEPAKLNDIDGF  151 (519)
T ss_dssp             TTSGGGHHHHHHTTCCSBSEEEEECTTCCSCCCEEECCSSC-CHHHHHHHHHHHHTTCCSCCCTTCCCCSBCCHHHHTTG
T ss_pred             CCccccHHHHHHcCCcccCEEEEEcCcccCCCceeEecCCC-CHHHHHHHHHHHHhhccccCCCCCCccCcCCHHHHHHH
Confidence            43  3678999999987 99999996322   234566777 888888888653    1      234566677777777


Q ss_pred             hccCCcceEEE-EEeCCccchhhhhHHHHHHHHhcc
Q psy7942         165 FGGEIKSHLLV-FFSKAAGHYESHFEPVQTVAKDFR  199 (216)
Q Consensus       165 ~~~~~~~~lll-f~~~~~~~~~~~~~~l~~vA~~~r  199 (216)
                      +.......+++ |.+.+.       ...+.++.++.
T Consensus       152 l~~~~~~~vallF~~~~s-------~~~~~~~ldl~  180 (519)
T 3t58_A          152 FTRNKADYLALVFEREDS-------YLGREVTLDLS  180 (519)
T ss_dssp             GGSCCCSEEEEEEECTTC-------CHHHHHHHHTT
T ss_pred             hccCCCCeEEEEecCCch-------HHHHHHHHHhh
Confidence            76543334444 443321       14455666665

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.27  E-value=3.4e-06  Score=70.32  Aligned_cols=101  Identities=17%  Similarity=0.310  Sum_probs=80.1

Q ss_pred             CCCceeecCHHHHHHhHhC--CCeEEEEEecCCC---hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceee
Q psy7942          27 GPPAKEFTSVDEIKAFIAD--SKVVVAGLFKDAS---SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFV  100 (216)
Q Consensus        27 ~~~v~~l~s~~~~~~~~~~--~~v~~V~f~~~~~---~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~  100 (216)
                      .+.|..++. ++++++++.  +++++|.|+.+||   ....+.|.+++..+ +.+.|.              .||     
T Consensus         6 ~~~v~~~~~-~~f~~~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~--------------~vd-----   65 (287)
T 3qou_A            6 VENIVNINE-SNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILA--------------KLD-----   65 (287)
T ss_dssp             CTTEEECCT-TTHHHHHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSSSEEE--------------EEE-----
T ss_pred             CCccEECCH-HHHHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEE--------------EEe-----
Confidence            345667764 788888864  7899999999997   45678899999888 458887              565     


Q ss_pred             ecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcC
Q psy7942         101 TSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQS  149 (216)
Q Consensus       101 ~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~  149 (216)
                      +..+++++++|+|.+ |++++|+++ .....|.|.. +.+.+..|+....
T Consensus        66 ~~~~~~~~~~~~v~~~Pt~~~~~~G-~~~~~~~g~~-~~~~l~~~l~~~l  113 (287)
T 3qou_A           66 CDAEQMIAAQFGLRAIPTVYLFQNG-QPVDGFQGPQ-PEEAIRALLDXVL  113 (287)
T ss_dssp             TTTCHHHHHTTTCCSSSEEEEEETT-EEEEEEESCC-CHHHHHHHHHHHS
T ss_pred             CccCHHHHHHcCCCCCCeEEEEECC-EEEEEeeCCC-CHHHHHHHHHHHc
Confidence            677889999999987 999999742 2234588988 8999999998875

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=98.25  E-value=1.4e-05  Score=59.24  Aligned_cols=102  Identities=17%  Similarity=0.247  Sum_probs=74.1

Q ss_pred             CCCceeecCHHHHHHhHhC--CCeEEEEEecCCChhH---HHHH---HHHHhhCCCceEEecchhhHHHHhhhhccccce
Q psy7942          27 GPPAKEFTSVDEIKAFIAD--SKVVVAGLFKDASSEL---AKTF---NEIASKVDDLVFDASSELAKTFNEIASKVDDLV   98 (216)
Q Consensus        27 ~~~v~~l~s~~~~~~~~~~--~~v~~V~f~~~~~~~~---~~~f---~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~   98 (216)
                      .|....+.+.++++..+++  +++++|.|+.+||...   .+.+   .+++..+.++.|.              .|+   
T Consensus        10 ~~~f~~~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~~~~~--------------~vd---   72 (134)
T 2fwh_A           10 HLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLL--------------QAN---   72 (134)
T ss_dssp             CCCCEECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEE--------------EEE---
T ss_pred             CCCcEEecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCcEEE--------------EEe---
Confidence            4556678888888887764  7899999999998544   3344   6777777667776              333   


Q ss_pred             eee----cccHHHHHhcCCCC-CeEEEEecCCCCc--ccccCCCCCHHHHHHHHhhc
Q psy7942          99 FVT----STNADILAEYSVDD-DTVAIFKKFDEGR--VNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus        99 ~~~----t~~~~v~~~~~v~~-p~i~~~~~~de~~--~~y~G~~~~~~~l~~fi~~~  148 (216)
                        .    ..+.+++++|++.. |++++|.+.....  ..+.|.. +.+.|.+++...
T Consensus        73 --~~~~~~~~~~l~~~~~v~~~Pt~~~~d~~G~~v~~~~~~G~~-~~~~l~~~l~~~  126 (134)
T 2fwh_A           73 --VTANDAQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFM-DAETFSAHLRDR  126 (134)
T ss_dssp             --CTTCCHHHHHHHHHTTCCSSSEEEEECTTSCBCGGGCBCSCC-CHHHHHHHHHHC
T ss_pred             --CCCCcchHHHHHHHcCCCCCCEEEEECCCCCEeeeeeeeecc-CHHHHHHHHHhc
Confidence              3    33567899999986 9999994322222  4688998 999999999764

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=98.25  E-value=1.4e-06  Score=64.09  Aligned_cols=90  Identities=14%  Similarity=0.198  Sum_probs=69.5

Q ss_pred             HHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCC
Q psy7942          38 EIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSV  113 (216)
Q Consensus        38 ~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v  113 (216)
                      .++....++++++|.|+.+||.   ...+.+.+++.++ +++.|.              .|+     ...+++++++|++
T Consensus        34 ~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~--------------~vd-----~d~~~~l~~~~~v   94 (128)
T 3ul3_B           34 IINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLL--------------KVD-----LDKNESLARKFSV   94 (128)
T ss_dssp             SSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEE--------------EEE-----GGGCHHHHHHTTC
T ss_pred             HHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEE--------------EEE-----CCCCHHHHHHcCC
Confidence            3445566789999999999984   4566888888887 567776              455     6677889999999


Q ss_pred             CC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         114 DD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       114 ~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      .. |++++|++ .+....+.|.. +.+.|.+||.++
T Consensus        95 ~~~Pt~~~~~~-G~~~~~~~G~~-~~~~l~~~l~~~  128 (128)
T 3ul3_B           95 KSLPTIILLKN-KTMLARKDHFV-SSNDLIALIKKH  128 (128)
T ss_dssp             CSSSEEEEEET-TEEEEEESSCC-CHHHHHHHHTTC
T ss_pred             CCcCEEEEEEC-CEEEEEecCCC-CHHHHHHHHHhC
Confidence            87 99999974 22344578888 999999999764

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=98.24  E-value=6.3e-06  Score=61.38  Aligned_cols=97  Identities=16%  Similarity=0.235  Sum_probs=64.0

Q ss_pred             ceeecCHHHHHHhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccH
Q psy7942          30 AKEFTSVDEIKAFIADSKVVVAGLFKDAS---SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNA  105 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~  105 (216)
                      +..++ .++++..+..++.++|.|+.+||   ....+.|.+++..+ +++.|.              .++     ...++
T Consensus        35 v~~l~-~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~--------------~vd-----~~~~~   94 (140)
T 1v98_A           35 VVEAD-EKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVV--------------KVN-----VDEHP   94 (140)
T ss_dssp             ---------------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEE--------------EEE-----TTTCH
T ss_pred             cccCC-HHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEE--------------EEE-----CCCCH
Confidence            44554 56777776555558899999997   45567888899888 478887              444     55678


Q ss_pred             HHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         106 DILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       106 ~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      +++++|++.. |++++|+++ +....|.|.. +.+.|.+||...
T Consensus        95 ~l~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~-~~~~l~~~i~~~  136 (140)
T 1v98_A           95 GLAARYGVRSVPTLVLFRRG-APVATWVGAS-PRRVLEERLRPY  136 (140)
T ss_dssp             HHHHHTTCCSSSEEEEEETT-EEEEEEESCC-CHHHHHHHHHHH
T ss_pred             HHHHHCCCCccCEEEEEeCC-cEEEEEeCCC-CHHHHHHHHHHH
Confidence            8999999986 999999742 2234578988 899999999764

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=98.21  E-value=1.4e-05  Score=57.57  Aligned_cols=99  Identities=7%  Similarity=0.103  Sum_probs=69.7

Q ss_pred             ceeecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccH
Q psy7942          30 AKEFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNA  105 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~  105 (216)
                      +..+ +.++++..+++++.++|.|+.+||.   ...+.+.+++..+ ..+.|.              .++...- ....+
T Consensus        14 ~~~~-~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~v~~~--------------~~~~~~~-~~~~~   77 (118)
T 1zma_A           14 LEVT-TVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFI--------------NSEEPSQ-LNDLQ   77 (118)
T ss_dssp             SEEC-CHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEE--------------ETTCGGG-HHHHH
T ss_pred             hhcC-CHHHHHHHHhCCCeEEEEEECCCCccHHHHHHHHHHHHHhcCCeEEEE--------------ECCCcCc-HHHHH
Confidence            3444 5788998888889999999999984   4566788888776 345554              1210000 11234


Q ss_pred             HHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHh
Q psy7942         106 DILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLS  146 (216)
Q Consensus       106 ~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~  146 (216)
                      +++++|++.. |++++|+++ +....+.|.. +.+.|.+||.
T Consensus        78 ~~~~~~~i~~~Pt~~~~~~G-~~~~~~~G~~-~~~~l~~~l~  117 (118)
T 1zma_A           78 AFRSRYGIPTVPGFVHITDG-QINVRCDSSM-SAQEIKDFAG  117 (118)
T ss_dssp             HHHHHHTCCSSCEEEEEETT-EEEEECCTTC-CHHHHHHHHT
T ss_pred             HHHHHcCCCCCCeEEEEECC-EEEEEecCCC-CHHHHHHHhh
Confidence            6788999986 999999853 2245678988 8999999986

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=98.19  E-value=6.8e-06  Score=66.43  Aligned_cols=98  Identities=17%  Similarity=0.320  Sum_probs=76.1

Q ss_pred             ceeecCHHHHHH-hHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeeccc
Q psy7942          30 AKEFTSVDEIKA-FIADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTN  104 (216)
Q Consensus        30 v~~l~s~~~~~~-~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~  104 (216)
                      +..+ +.++++. +++++++++|.|+.+||.   ...+.+.+++.++ +.+.|.              .|+     ...+
T Consensus        14 ~~~l-t~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~--------------~vd-----~d~~   73 (222)
T 3dxb_A           14 IIHL-TDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVA--------------KLN-----IDQN   73 (222)
T ss_dssp             CEEC-CTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEE--------------EEE-----TTTC
T ss_pred             ceeC-CHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEE--------------EEE-----CCCC
Confidence            3445 4577876 577899999999999984   5567889999988 457777              454     5667


Q ss_pred             HHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcC
Q psy7942         105 ADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQS  149 (216)
Q Consensus       105 ~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~  149 (216)
                      ++++++|++.. |++++|+++ .....|.|.. +.+.|.+||....
T Consensus        74 ~~l~~~~~v~~~Pt~~~~~~G-~~~~~~~G~~-~~~~l~~~l~~~l  117 (222)
T 3dxb_A           74 PGTAPKYGIRGIPTLLLFKNG-EVAATKVGAL-SKGQLKEFLDANL  117 (222)
T ss_dssp             TTTGGGGTCCSBSEEEEEETT-EEEEEEESCC-CHHHHHHHHHHHS
T ss_pred             HHHHHHcCCCcCCEEEEEECC-eEEEEecccc-ChHHHHHHHHhhc
Confidence            78999999987 999999842 2234688998 9999999998753

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=98.19  E-value=2.9e-06  Score=68.93  Aligned_cols=99  Identities=19%  Similarity=0.250  Sum_probs=74.5

Q ss_pred             ceeecCHHHHHHhHhCC---CeEEEEEecCCC---hhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          30 AKEFTSVDEIKAFIADS---KVVVAGLFKDAS---SELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~---~v~~V~f~~~~~---~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      +..|.+.+++...+.+.   ++++|.||.+||   ..+.+.|.++|.++.++.|.              .|+     ++ 
T Consensus       101 v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~~v~f~--------------~vd-----~~-  160 (217)
T 2trc_P          101 VYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFC--------------KIR-----AS-  160 (217)
T ss_dssp             EEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTTSEEE--------------EEE-----HH-
T ss_pred             EEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCCCeEEE--------------EEE-----CC-
Confidence            56777889998888643   789999999997   45677899999998888888              454     44 


Q ss_pred             cHHHHHhcCCCC-CeEEEEecCCCCcccccCCC------CCHHHHHHHHhhcC
Q psy7942         104 NADILAEYSVDD-DTVAIFKKFDEGRVNYEGPA------SDEAALRKFLSTQS  149 (216)
Q Consensus       104 ~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~------~~~~~l~~fi~~~~  149 (216)
                      ++.++.+|++.. |++++|+++. ....|.|..      .+.+.|..||..+.
T Consensus       161 ~~~l~~~~~i~~~PTl~~~~~G~-~v~~~~G~~~~~g~~~~~~~Le~~L~~~g  212 (217)
T 2trc_P          161 NTGAGDRFSSDVLPTLLVYKGGE-LISNFISVAEQFAEDFFAADVESFLNEYG  212 (217)
T ss_dssp             HHTCSTTSCGGGCSEEEEEETTE-EEEEETTGGGGSCSSCCHHHHHHHHHTTT
T ss_pred             cHHHHHHCCCCCCCEEEEEECCE-EEEEEeCCcccCcccCCHHHHHHHHHHcC
Confidence            667888999975 9999998532 233455543      14589999998764

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=98.17  E-value=5.7e-06  Score=59.66  Aligned_cols=97  Identities=21%  Similarity=0.399  Sum_probs=70.4

Q ss_pred             CceeecCHHHHHHhH-hCCCeEEEEEecCCC---hhHHHHHHHHHhhC-C-----CceEEecchhhHHHHhhhhccccce
Q psy7942          29 PAKEFTSVDEIKAFI-ADSKVVVAGLFKDAS---SELAKTFNEIASKV-D-----DLVFDASSELAKTFNEIASKVDDLV   98 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~-~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~-~-----~~~F~~~~~~~~~~~~~~~~~~~~~   98 (216)
                      .+..|+. ++++..+ ..+++++|.|+.+||   ....+.|.+++..+ +     .+.|+              .+|   
T Consensus         8 ~v~~l~~-~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~--------------~vd---   69 (121)
T 2djj_A            8 PVTVVVA-KNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIA--------------KVD---   69 (121)
T ss_dssp             SSEECCT-TTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEE--------------EEE---
T ss_pred             CeEEecc-cCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEE--------------EEE---
Confidence            4566654 6777765 578899999999998   45577888999887 3     57777              343   


Q ss_pred             eeecccHHHHHhcCCCC-CeEEEEecCCCC-cccccCCCCCHHHHHHHHhhcC
Q psy7942          99 FVTSTNADILAEYSVDD-DTVAIFKKFDEG-RVNYEGPASDEAALRKFLSTQS  149 (216)
Q Consensus        99 ~~~t~~~~v~~~~~v~~-p~i~~~~~~de~-~~~y~G~~~~~~~l~~fi~~~~  149 (216)
                        ...++ +++  ++.. |++++|++.... ...|.|.. +.+.|.+||..+.
T Consensus        70 --~~~~~-~~~--~v~~~Pt~~~~~~~~~~~~~~~~G~~-~~~~l~~~i~~~~  116 (121)
T 2djj_A           70 --ATAND-VPD--EIQGFPTIKLYPAGAKGQPVTYSGSR-TVEDLIKFIAENG  116 (121)
T ss_dssp             --TTTSC-CSS--CCSSSSEEEEECSSCTTSCCCCCCCS-CHHHHHHHHHHTS
T ss_pred             --Ccccc-ccc--ccCcCCeEEEEeCcCCCCceEecCCC-CHHHHHHHHHhcc
Confidence              33332 444  7775 999999974332 56789998 9999999998764

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=98.16  E-value=9.6e-06  Score=61.18  Aligned_cols=100  Identities=20%  Similarity=0.198  Sum_probs=72.0

Q ss_pred             ceeecCHHHHHHhHh--CCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          30 AKEFTSVDEIKAFIA--DSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        30 v~~l~s~~~~~~~~~--~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      +..+.+.++++..+.  ++++++|.|+.+||.   ...+.+.+++..+ +.+.|.              .||     ...
T Consensus         5 l~~i~~~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~--------------~vd-----~d~   65 (142)
T 1qgv_A            5 LPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIY--------------LVD-----ITE   65 (142)
T ss_dssp             SCBCCSHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEE--------------EEE-----TTT
T ss_pred             HhccCCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEE--------------EEc-----ccc
Confidence            456778899987554  588999999999984   5567888888888 667777              454     556


Q ss_pred             cHHHHHhcCCCC-CeEEEEecCCCCcc--------cccCCCCCHHHHHHHHhhc
Q psy7942         104 NADILAEYSVDD-DTVAIFKKFDEGRV--------NYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       104 ~~~v~~~~~v~~-p~i~~~~~~de~~~--------~y~G~~~~~~~l~~fi~~~  148 (216)
                      +++++++|++.. |++++|+++..-..        ...|...+.+.|.++|...
T Consensus        66 ~~~~~~~~~i~~~Pt~~~~~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~  119 (142)
T 1qgv_A           66 VPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETV  119 (142)
T ss_dssp             CCTTTTSSCSCSSCEEEEEETTEEEEEECC------CCSCCSCHHHHHHHHHHH
T ss_pred             CHHHHHHcCCCCCCEEEEEECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHH
Confidence            778899999986 99999985322111        2445552478888888653

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=98.15  E-value=2e-05  Score=55.95  Aligned_cols=96  Identities=20%  Similarity=0.275  Sum_probs=71.3

Q ss_pred             CceeecCHHHHHHhHh--CCCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeec-
Q psy7942          29 PAKEFTSVDEIKAFIA--DSKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTS-  102 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~~--~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t-  102 (216)
                      .+..+++ +++++.+.  .+++++|.|+.+||.   ...+.+.+++..+.++.|.              .+|     .. 
T Consensus         6 ~v~~l~~-~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~--------------~vd-----~~~   65 (111)
T 2pu9_C            6 KVTEVNK-DTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFL--------------KLD-----CNQ   65 (111)
T ss_dssp             SEEEECT-TTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEE--------------EEE-----CSS
T ss_pred             ccEEech-HHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCCeEEE--------------EEe-----cCc
Confidence            4566764 77888776  478999999999984   4567888888888778887              344     44 


Q ss_pred             ccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942         103 TNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       103 ~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                      .+++++++|++.. |++++++++. ....+.|.  ..+.|.+||..
T Consensus        66 ~~~~~~~~~~v~~~Pt~~~~~~G~-~~~~~~G~--~~~~l~~~l~~  108 (111)
T 2pu9_C           66 ENKTLAKELGIRVVPTFKILKENS-VVGEVTGA--KYDKLLEAIQA  108 (111)
T ss_dssp             TTHHHHHHHCCSBSSEEEEESSSS-EEEEEESS--CHHHHHHHHHH
T ss_pred             chHHHHHHcCCCeeeEEEEEeCCc-EEEEEcCC--CHHHHHHHHHH
Confidence            4678999999986 9999887532 23346675  47889999875

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=98.12  E-value=1.2e-05  Score=59.13  Aligned_cols=95  Identities=15%  Similarity=0.199  Sum_probs=66.8

Q ss_pred             ceeecCHHHHHHhHh-CCC--eEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          30 AKEFTSVDEIKAFIA-DSK--VVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        30 v~~l~s~~~~~~~~~-~~~--v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      +..++ .+++.+.+. +.+  .++|.|+++||.   .+.+.+.++|.+++++.|.              +||     .  
T Consensus         5 v~~it-~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~~v~f~--------------kvd-----~--   62 (118)
T 3evi_A            5 LREIS-GNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFV--------------KAI-----V--   62 (118)
T ss_dssp             CEECC-GGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCTTSEEE--------------EEE-----G--
T ss_pred             eEEeC-HHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCCCEEE--------------EEE-----h--
Confidence            45674 466666544 444  899999999984   5577899999999889998              343     2  


Q ss_pred             cHHHHHhcCCCC-CeEEEEecCCCCcccccC-------CCCCHHHHHHHHhhcC
Q psy7942         104 NADILAEYSVDD-DTVAIFKKFDEGRVNYEG-------PASDEAALRKFLSTQS  149 (216)
Q Consensus       104 ~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G-------~~~~~~~l~~fi~~~~  149 (216)
                      + +.+++|++.. |++++|+++.. ...+.|       .+ +.+.|+.|+....
T Consensus        63 d-~~~~~~~v~~~PT~~~fk~G~~-v~~~~G~~~~gg~~~-~~~~le~~L~~~g  113 (118)
T 3evi_A           63 N-SCIQHYHDNCLPTIFVYKNGQI-EAKFIGIIECGGINL-KLEELEWKLAEVG  113 (118)
T ss_dssp             G-GTSTTCCGGGCSEEEEEETTEE-EEEEESTTTTTCSSC-CHHHHHHHHHTTT
T ss_pred             H-HhHHHCCCCCCCEEEEEECCEE-EEEEeChhhhCCCCC-CHHHHHHHHHHcC
Confidence            2 2357899875 99999996432 222332       35 8999999998753

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=98.11  E-value=2.3e-06  Score=62.45  Aligned_cols=100  Identities=23%  Similarity=0.250  Sum_probs=74.8

Q ss_pred             CCceeecCHHHHHHhHhC----CCeEEEEEecCCC---hhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceee
Q psy7942          28 PPAKEFTSVDEIKAFIAD----SKVVVAGLFKDAS---SELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFV  100 (216)
Q Consensus        28 ~~v~~l~s~~~~~~~~~~----~~v~~V~f~~~~~---~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~  100 (216)
                      ..+..+++.+++++.+..    +++++|.|+.+||   ....+.+.+++..+.++.|.              .++     
T Consensus        14 ~~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~--------------~v~-----   74 (130)
T 1wmj_A           14 GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFL--------------KVD-----   74 (130)
T ss_dssp             SSSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCTTBCCE--------------ECC-----
T ss_pred             cceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCCCCEEE--------------EEe-----
Confidence            346778788888887764    7889999999986   45677888889888777777              344     


Q ss_pred             ecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcC
Q psy7942         101 TSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQS  149 (216)
Q Consensus       101 ~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~  149 (216)
                      ...+++++++|++.. |++++|+++ .....+.| . +.+.|.+||....
T Consensus        75 ~~~~~~~~~~~~v~~~Pt~~~~~~g-~~~~~~~g-~-~~~~l~~~l~~~~  121 (130)
T 1wmj_A           75 VDELKEVAEKYNVEAMPTFLFIKDG-AEADKVVG-A-RKDDLQNTIVKHV  121 (130)
T ss_dssp             TTTSGGGHHHHTCCSSCCCCBCTTT-TCCBCCCT-T-CTTTHHHHHHHHT
T ss_pred             ccchHHHHHHcCCCccceEEEEeCC-eEEEEEeC-C-CHHHHHHHHHHHH
Confidence            556778999999986 999999643 22345667 5 6678888887653

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.11  E-value=3.2e-06  Score=62.15  Aligned_cols=102  Identities=23%  Similarity=0.373  Sum_probs=74.2

Q ss_pred             CceeecCHHHHHHhHh-CCCeEEEEEecCCCh---hHHHHHHHHHhhC---CCceEEecchhhHHHHhhhhccccceeee
Q psy7942          29 PAKEFTSVDEIKAFIA-DSKVVVAGLFKDASS---ELAKTFNEIASKV---DDLVFDASSELAKTFNEIASKVDDLVFVT  101 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~~-~~~v~~V~f~~~~~~---~~~~~f~~~A~~~---~~~~F~~~~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      .+..|+. ++++..+. .+++++|.|+.+||.   ...+.|.+++..+   .++.|+              .+|     .
T Consensus         8 ~v~~l~~-~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~--------------~vd-----~   67 (133)
T 2dj3_A            8 PVKVVVG-KTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIA--------------KMD-----A   67 (133)
T ss_dssp             SSEECCT-TTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEE--------------EEC-----T
T ss_pred             ceEEEcC-CCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEE--------------Eec-----C
Confidence            4556654 66766665 488999999999984   5567888888887   357777              455     5


Q ss_pred             cccHHHHHhcCCCC-CeEEEEecCCC-Cccccc-CCCCCHHHHHHHHhhcCCC
Q psy7942         102 STNADILAEYSVDD-DTVAIFKKFDE-GRVNYE-GPASDEAALRKFLSTQSLP  151 (216)
Q Consensus       102 t~~~~v~~~~~v~~-p~i~~~~~~de-~~~~y~-G~~~~~~~l~~fi~~~~~P  151 (216)
                      ..++.++++|++.. |++++|++... ....|. |.. +.+.|.+||....-.
T Consensus        68 ~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~gg~~-~~~~l~~~l~~~~~~  119 (133)
T 2dj3_A           68 TANDITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGNR-DLEHLSKFIDEHATK  119 (133)
T ss_dssp             TTSCCCCSSCCCSSSSEEEEECTTCTTSCEECCSSCC-STTHHHHHHHHHSSS
T ss_pred             CcCHHHHhhcCCCcCCEEEEEeCCCcccceEecCCCc-CHHHHHHHHHHhccc
Confidence            55666778899986 99999986433 234577 557 889999999887543

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=98.10  E-value=1.7e-05  Score=58.86  Aligned_cols=95  Identities=8%  Similarity=0.012  Sum_probs=73.0

Q ss_pred             ceeecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeee-----
Q psy7942          30 AKEFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVT-----  101 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~-----  101 (216)
                      +..+ +.+++++.+++  +++|.|+.+||.   ...+.+.+++.+++ +.|.              .|+     .     
T Consensus        18 v~~l-~~~~~~~~~~~--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-v~~~--------------~vd-----~~~~~~   74 (135)
T 3emx_A           18 LIYI-TPEEFRQLLQG--DAILAVYSKTCPHCHRDWPQLIQASKEVD-VPIV--------------MFI-----WGSLIG   74 (135)
T ss_dssp             EEEC-CHHHHHHHHTS--SEEEEEEETTCHHHHHHHHHHHHHHTTCC-SCEE--------------EEE-----ECTTCC
T ss_pred             eeec-CHHHHHHHhCC--cEEEEEECCcCHhhhHhChhHHHHHHHCC-CEEE--------------EEE-----CCCchh
Confidence            4455 67899999877  889999999984   45668888888876 6666              333     4     


Q ss_pred             ----cccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcC
Q psy7942         102 ----STNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQS  149 (216)
Q Consensus       102 ----t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~  149 (216)
                          ..+++++++|++.. |++++|+++ +....+.|.. +.+.+..||+...
T Consensus        75 ~~~~d~~~~l~~~~~v~~~Pt~~~~~~G-~~v~~~~G~~-~~~~~~~~i~~~~  125 (135)
T 3emx_A           75 ERELSAARLEMNKAGVEGTPTLVFYKEG-RIVDKLVGAT-PWSLKVEKAREIY  125 (135)
T ss_dssp             HHHHHHHHHHHHHHTCCSSSEEEEEETT-EEEEEEESCC-CHHHHHHHHHHHC
T ss_pred             hhhhhhhHHHHHHcCCceeCeEEEEcCC-EEEEEEeCCC-CHHHHHHHHHHHh
Confidence                45678899999986 999999942 2345678988 8999999998765

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.07  E-value=1.6e-06  Score=64.56  Aligned_cols=97  Identities=19%  Similarity=0.274  Sum_probs=71.2

Q ss_pred             ceeecCHHHHHHhHhCCC--eEEEEEecCCC---hhHHHHHHHHHhhC--CCceEEecchhhHHHHhhhhccccceeeec
Q psy7942          30 AKEFTSVDEIKAFIADSK--VVVAGLFKDAS---SELAKTFNEIASKV--DDLVFDASSELAKTFNEIASKVDDLVFVTS  102 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~--v~~V~f~~~~~---~~~~~~f~~~A~~~--~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t  102 (216)
                      +..++ .+++++.+..++  +++|.|+.+||   ....+.|.+++.++  +++.|+              .+|     ..
T Consensus         9 v~~l~-~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~--------------~vd-----~~   68 (137)
T 2dj0_A            9 IKYFN-DKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFG--------------KVD-----VG   68 (137)
T ss_dssp             CEECC-TTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEE--------------ECC-----TT
T ss_pred             EEEcc-HhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEE--------------EEe-----Cc
Confidence            55565 578888776544  88999999997   45678899999888  368888              565     66


Q ss_pred             ccHHHHHhcCCC------C-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         103 TNADILAEYSVD------D-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       103 ~~~~v~~~~~v~------~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      .+++++++|++.      . |++++|++. +....+.|.. +.+.|.+|+...
T Consensus        69 ~~~~~~~~~~v~~~~~~~~~Pt~~~~~~G-~~~~~~~G~~-~~~~l~~~l~~~  119 (137)
T 2dj0_A           69 RYTDVSTRYKVSTSPLTKQLPTLILFQGG-KEAMRRPQID-KKGRAVSWTFSE  119 (137)
T ss_dssp             TCHHHHHHTTCCCCSSSSCSSEEEEESSS-SEEEEESCBC-SSSCBCCCCCCH
T ss_pred             cCHHHHHHccCcccCCcCCCCEEEEEECC-EEEEEecCcC-chHHHHHHHhcc
Confidence            788899999996      5 999999742 2234577876 666666666543

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=98.06  E-value=2.1e-05  Score=57.46  Aligned_cols=95  Identities=14%  Similarity=0.150  Sum_probs=70.7

Q ss_pred             eeecCHHHHHHhHhC--CCeEEEEEecC-------CCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccc
Q psy7942          31 KEFTSVDEIKAFIAD--SKVVVAGLFKD-------ASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDL   97 (216)
Q Consensus        31 ~~l~s~~~~~~~~~~--~~v~~V~f~~~-------~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~   97 (216)
                      ..+.+.+++++.+.+  +++++|.|+.+       ||.   ...+.+.+++..+ +++.|.              .++  
T Consensus         7 v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~--------------~vd--   70 (123)
T 1wou_A            7 VSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFI--------------YCQ--   70 (123)
T ss_dssp             EEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEE--------------EEE--
T ss_pred             EEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEE--------------EEE--
Confidence            456788999988876  89999999999       984   5567888888888 577777              333  


Q ss_pred             eeee-------cccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942          98 VFVT-------STNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus        98 ~~~~-------t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                         .       ..++.++++|++.. |++++|++ .....-+.| . +.+.|.+||.+
T Consensus        71 ---~~~~~~~~d~~~~~~~~~~i~~~Pt~~~~~~-~~~~~g~~~-~-~~~~l~~~i~~  122 (123)
T 1wou_A           71 ---VGEKPYWKDPNNDFRKNLKVTAVPTLLKYGT-PQKLVESEC-L-QANLVEMLFSE  122 (123)
T ss_dssp             ---CCCHHHHHCTTCHHHHHHCCCSSSEEEETTS-SCEEEGGGG-G-CHHHHHHHHHC
T ss_pred             ---CCCchhhhchhHHHHHHCCCCeeCEEEEEcC-CceEecccc-C-CHHHHHHHHhc
Confidence               3       35667889999986 99999986 222223343 4 67889999864

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=98.05  E-value=6.9e-05  Score=61.64  Aligned_cols=122  Identities=18%  Similarity=0.185  Sum_probs=82.6

Q ss_pred             CcccCC--CCCChHHHHHHHHhhhCCCceeecCHHHHHHhHhCCCeEEEEEecCCC---h----hHHHHHHHHHhhCCCc
Q psy7942           5 LPGERR--GGRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDAS---S----ELAKTFNEIASKVDDL   75 (216)
Q Consensus         5 ~~~~Y~--G~Rta~~iv~~l~~~~~~~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~---~----~~~~~f~~~A~~~~~~   75 (216)
                      ....|+  |++++++|.+|+....-|.+.+++. +++..+.....++++.++.+..   .    .....|.++|+++..+
T Consensus        91 ~~~~y~g~~~~~~~~l~~fi~~~~~Plv~e~t~-~n~~~~~~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~vAk~~kki  169 (250)
T 3ec3_A           91 RMHVMDVQGSTEASAIKDYVVKHALPLVGHRKT-SNDAKRYSKRPLVVVYYSVDFSFDYRTATQFWRNKVLEVAKDFPEY  169 (250)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHHSSCTEEEECT-TTHHHHSCSSSEEEEEECCCCSTTTHHHHHHHHHHHHHHHTTCTTS
T ss_pred             cceeccCCCCCCHHHHHHHHHHcCCCceeecCc-cchhhhhccCccEEEEEecccccccchhHHHHHHHHHHHHHhhcce
Confidence            456788  5899999999999999999999985 4555544555555555543422   1    2467889999988777


Q ss_pred             eEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC----CeEEEEecCCCCccccc-CCCCCHHHHHHHHhhc
Q psy7942          76 VFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD----DTVAIFKKFDEGRVNYE-GPASDEAALRKFLSTQ  148 (216)
Q Consensus        76 ~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~----p~i~~~~~~de~~~~y~-G~~~~~~~l~~fi~~~  148 (216)
                      .|++              +|     .......++.+|++.    |.++++.. +.....+. +.+ +.+.|.+|+...
T Consensus       170 ~F~~--------------~d-----~~~~~~~l~~fgl~~~~~~p~~~~~~~-~~~ky~~~~~~~-t~~~i~~Fv~~~  226 (250)
T 3ec3_A          170 TFAI--------------AD-----EEDYATEVKDLGLSESGGDVNAAILDE-SGKKFAMEPEEF-DSDALREFVMAF  226 (250)
T ss_dssp             EEEE--------------EE-----TTTTHHHHHHTTCSSCSCSCEEEEECT-TSCEEECCCCSC-CHHHHHHHHHHH
T ss_pred             eEEE--------------Ec-----HHHHHHHHHHcCCCccCCCcEEEEEcC-CCceecCCcccC-CHHHHHHHHHHH
Confidence            8883              22     222344677788752    46666542 33344455 678 999999999764

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=98.04  E-value=4.9e-05  Score=55.01  Aligned_cols=98  Identities=19%  Similarity=0.262  Sum_probs=71.5

Q ss_pred             CCceeecCHHHHHHhHh--CCCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeec
Q psy7942          28 PPAKEFTSVDEIKAFIA--DSKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTS  102 (216)
Q Consensus        28 ~~v~~l~s~~~~~~~~~--~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t  102 (216)
                      ..+..+++ +++++.+.  .+++++|.|+.+||.   ...+.+.+++.++.++.|.              .+|     ..
T Consensus        18 ~~v~~l~~-~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~--------------~vd-----~~   77 (124)
T 1faa_A           18 GKVTEVNK-DTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFL--------------KLD-----CN   77 (124)
T ss_dssp             TSEEEECT-TTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEE--------------EEE-----CS
T ss_pred             CceEEecc-hhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCCCEEE--------------EEe-----cC
Confidence            34566754 67777766  578899999999984   4567888888888778777              344     43


Q ss_pred             -ccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         103 -TNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       103 -~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                       .+++++++|++.. |++++++++ +....+.|.  ..+.|.+||...
T Consensus        78 ~~~~~~~~~~~v~~~Pt~~~~~~G-~~~~~~~G~--~~~~l~~~i~~~  122 (124)
T 1faa_A           78 QENKTLAKELGIRVVPTFKILKEN-SVVGEVTGA--KYDKLLEAIQAA  122 (124)
T ss_dssp             STTHHHHHHHCCSSSSEEEEEETT-EEEEEEESS--CHHHHHHHHHHH
T ss_pred             cchHHHHHHcCCCeeeEEEEEeCC-cEEEEEcCC--CHHHHHHHHHHh
Confidence             4678999999986 999999852 223345675  478899998753

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=97.99  E-value=4.5e-05  Score=55.43  Aligned_cols=91  Identities=11%  Similarity=0.105  Sum_probs=65.9

Q ss_pred             hHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-C
Q psy7942          42 FIADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-D  116 (216)
Q Consensus        42 ~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p  116 (216)
                      ....+++++|.|+.+||.   ...+.+.+++..+ +++.|.              .|+-.   ...+++++++|++.. |
T Consensus        22 ~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~--------------~v~~~---~d~~~~~~~~~~v~~~P   84 (126)
T 2l57_A           22 EAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIY--------------YARLE---EEKNIDLAYKYDANIVP   84 (126)
T ss_dssp             TCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEE--------------EEETT---SSHHHHHHHHTTCCSSS
T ss_pred             HHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEE--------------EEeCC---CCchHHHHHHcCCccee
Confidence            345678899999999984   4566888888888 677776              11100   112567899999986 9


Q ss_pred             eEEEEecCCCCcccccCCCCCHHHHHHHHhhcCC
Q psy7942         117 TVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSL  150 (216)
Q Consensus       117 ~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~  150 (216)
                      ++++|.+.......+.|.. +.+.|.+||.....
T Consensus        85 t~~~~~~~G~~~~~~~G~~-~~~~l~~~l~~~~~  117 (126)
T 2l57_A           85 TTVFLDKEGNKFYVHQGLM-RKNNIETILNSLGV  117 (126)
T ss_dssp             EEEEECTTCCEEEEEESCC-CHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCEEEEecCCC-CHHHHHHHHHHHhc
Confidence            9999985333344578988 89999999987643

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=97.97  E-value=2.1e-05  Score=58.38  Aligned_cols=98  Identities=8%  Similarity=0.094  Sum_probs=70.3

Q ss_pred             CceeecCHHHHHHhHhC--CCeEEEEEecCCChh---HHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          29 PAKEFTSVDEIKAFIAD--SKVVVAGLFKDASSE---LAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~~~--~~v~~V~f~~~~~~~---~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      .+..+++.++++..+++  +++++|.|+.+||..   ..+.|.+++..+ ++.|.              .+|     ...
T Consensus        21 ~v~~l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~-~v~~~--------------~vd-----~~~   80 (133)
T 3cxg_A           21 IYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY-YVTLV--------------DID-----VDI   80 (133)
T ss_dssp             EEEECCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE-ECEEE--------------EEE-----TTT
T ss_pred             cEEEecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc-CEEEE--------------EEe-----ccc
Confidence            35678888899988876  469999999999853   455666666655 45665              344     556


Q ss_pred             cHHHHHhcCCCC-CeEEEEe--cCCC-CcccccCCCCCHHHHHHHHhhc
Q psy7942         104 NADILAEYSVDD-DTVAIFK--KFDE-GRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       104 ~~~v~~~~~v~~-p~i~~~~--~~de-~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      +++++++|++.. |++++|+  +... ....+.|.  +.+.|.+||...
T Consensus        81 ~~~l~~~~~v~~~Pt~~~~~~~~g~g~~~~~~~G~--~~~~l~~~l~~~  127 (133)
T 3cxg_A           81 HPKLNDQHNIKALPTFEFYFNLNNEWVLVHTVEGA--NQNDIEKAFQKY  127 (133)
T ss_dssp             CHHHHHHTTCCSSSEEEEEEEETTEEEEEEEEESC--CHHHHHHHHHHH
T ss_pred             hHHHHHhcCCCCCCEEEEEEecCCCeEEEEEEcCC--CHHHHHHHHHHH
Confidence            788999999986 9999996  3221 12345665  678899998764

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=97.97  E-value=3.3e-05  Score=63.95  Aligned_cols=99  Identities=17%  Similarity=0.201  Sum_probs=73.4

Q ss_pred             CceeecCHHHHHHhHhC---CCeEEEEEecCCC---hhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeec
Q psy7942          29 PAKEFTSVDEIKAFIAD---SKVVVAGLFKDAS---SELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTS  102 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~~~---~~v~~V~f~~~~~---~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t  102 (216)
                      .|..|.+.+++...+..   +++++|.||++||   ..+.+.|.++|.++..+.|.              .|+     +.
T Consensus       113 ~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~v~f~--------------kVd-----~d  173 (245)
T 1a0r_P          113 FVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPMVKFC--------------KIK-----AS  173 (245)
T ss_dssp             SEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTTSEEE--------------EEE-----HH
T ss_pred             eEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCCCEEE--------------EEe-----CC
Confidence            35677788999988853   7899999999997   45677899999999778887              333     32


Q ss_pred             ccHHHHHhcCCCC-CeEEEEecCCCCccccc------C-CCCCHHHHHHHHhhcC
Q psy7942         103 TNADILAEYSVDD-DTVAIFKKFDEGRVNYE------G-PASDEAALRKFLSTQS  149 (216)
Q Consensus       103 ~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~------G-~~~~~~~l~~fi~~~~  149 (216)
                      . ..++.+|++.. |++++|+++.. ...+.      | .+ +.+.|..||..+.
T Consensus       174 ~-~~l~~~~~I~~~PTll~~~~G~~-v~~~vG~~~~~g~~~-~~e~Le~~L~~~g  225 (245)
T 1a0r_P          174 N-TGAGDRFSSDVLPTLLVYKGGEL-LSNFISVTEQLAEEF-FTGDVESFLNEYG  225 (245)
T ss_dssp             H-HCCTTSSCTTTCSEEEEEETTEE-EEEETTGGGGSCTTC-CHHHHHHHHHTTT
T ss_pred             c-HHHHHHCCCCCCCEEEEEECCEE-EEEEeCCcccccccc-cHHHHHHHHHHcC
Confidence            2 55778899986 99999995322 11222      3 25 7889999999875

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=97.14  E-value=1.5e-06  Score=60.72  Aligned_cols=95  Identities=19%  Similarity=0.290  Sum_probs=66.8

Q ss_pred             eeecCHHHHH-HhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccH
Q psy7942          31 KEFTSVDEIK-AFIADSKVVVAGLFKDAS---SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNA  105 (216)
Q Consensus        31 ~~l~s~~~~~-~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~  105 (216)
                      ..+++ +++. ..++++++++|.|+.+||   ....+.+.+++..+ +++.|.              .++     ...++
T Consensus         4 ~~l~~-~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~--------------~v~-----~~~~~   63 (106)
T 2yj7_A            4 IEVTD-ENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVV--------------KVN-----VDENP   63 (106)
Confidence            34543 4554 345678889999999887   34556777777777 356666              344     55567


Q ss_pred             HHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942         106 DILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       106 ~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                      +++++|++.. |++++|+++ +....|.|.. +.+.|.+||..
T Consensus        64 ~~~~~~~v~~~Pt~~~~~~g-~~~~~~~g~~-~~~~l~~~l~~  104 (106)
T 2yj7_A           64 NTAAQYGIRSIPTLLLFKNG-QVVDRLVGAQ-PKEALKERIDK  104 (106)
Confidence            8899999986 999999642 3344678887 88889998875

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=97.89  E-value=1.7e-05  Score=58.94  Aligned_cols=62  Identities=18%  Similarity=0.182  Sum_probs=50.3

Q ss_pred             cCCCceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         148 QSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       148 ~~~P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      .++|++.++|.+++..+++++. +.++.|... .+....+...|+++|++|++++.|+++|...
T Consensus         3 c~~plv~~~t~~~f~~~~~~~~-pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~   64 (133)
T 2djk_A            3 LGSPLIGEIGPETYSDYMSAGI-PLAYIFAET-AEERKELSDKLKPIAEAQRGVINFGTIDAKA   64 (133)
T ss_dssp             CSCCCSEECCHHHHHHHHHTTS-CEEEEECSC-SSSHHHHHHHHHHHHHSSTTTSEEEEECTTT
T ss_pred             cccCceeccChHHHHHHhcCCC-CEEEEEecC-hhhHHHHHHHHHHHHHHhCCeEEEEEEchHH
Confidence            5789999999999998887664 334446554 4567789999999999999999999999654

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.88  E-value=8.4e-05  Score=55.22  Aligned_cols=96  Identities=17%  Similarity=0.186  Sum_probs=69.0

Q ss_pred             CceeecCHHHHHHhHhCC---CeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeec
Q psy7942          29 PAKEFTSVDEIKAFIADS---KVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTS  102 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~~~~---~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t  102 (216)
                      .+..| +.+++++.+...   ++++|.|+.+||.   .+.+.|.++|.++.++.|.              .|+     ..
T Consensus        11 ~v~~i-~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~~v~~~--------------~vd-----~~   70 (135)
T 2dbc_A           11 ELREI-SGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETKFV--------------KAI-----VN   70 (135)
T ss_dssp             SCEEC-CHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCSSEEEE--------------EEC-----CS
T ss_pred             ceEEc-CHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCCcEEE--------------EEE-----hh
Confidence            36677 788998877642   5899999999984   5567889999988778887              343     22


Q ss_pred             ccHHHHHhcCCCC-CeEEEEecCCCCcccccCC-------CCCHHHHHHHHhhcC
Q psy7942         103 TNADILAEYSVDD-DTVAIFKKFDEGRVNYEGP-------ASDEAALRKFLSTQS  149 (216)
Q Consensus       103 ~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~-------~~~~~~l~~fi~~~~  149 (216)
                      ..   .++|++.. |++++|++... ...+.|.       + +.+.|.+|+..+.
T Consensus        71 ~~---~~~~~i~~~Pt~~~~~~G~~-v~~~~G~~~~~~~~~-~~~~l~~~l~~~~  120 (135)
T 2dbc_A           71 SC---IEHYHDNCLPTIFVYKNGQI-EGKFIGIIECGGINL-KLEELEWKLSEVG  120 (135)
T ss_dssp             SS---CSSCCSSCCSEEEEESSSSC-SEEEESTTTTTCTTC-CHHHHHHHHHHHT
T ss_pred             cC---cccCCCCCCCEEEEEECCEE-EEEEEeEEeeCCCcC-CHHHHHHHHHHcC
Confidence            22   26789886 99999985432 3334443       3 6889999998764

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=97.77  E-value=9e-05  Score=54.32  Aligned_cols=94  Identities=14%  Similarity=0.209  Sum_probs=63.9

Q ss_pred             cCHHHHHHh----HhCCCeEEEEEecCCCh---hHHHHHH--HHHhhC-CCceEEecchhhHHHHhhhhccccceeee--
Q psy7942          34 TSVDEIKAF----IADSKVVVAGLFKDASS---ELAKTFN--EIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVT--  101 (216)
Q Consensus        34 ~s~~~~~~~----~~~~~v~~V~f~~~~~~---~~~~~f~--~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~--  101 (216)
                      .+.+++++.    ...+++++|.|+.+||.   ...+.|.  +++..+ +++.|.              .|+     .  
T Consensus        13 ~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~--------------~vd-----~~~   73 (133)
T 3fk8_A           13 DAWTQVKKALAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVV--------------KID-----VGN   73 (133)
T ss_dssp             CHHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEE--------------EEE-----CTT
T ss_pred             ChHhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEE--------------EEe-----CCc
Confidence            344455443    34689999999999985   3455676  667666 566666              333     4  


Q ss_pred             -cccHHHHHhcCC---CC-CeEEEEecCCCCcccccC-------CCCCHHHHHHHHhh
Q psy7942         102 -STNADILAEYSV---DD-DTVAIFKKFDEGRVNYEG-------PASDEAALRKFLST  147 (216)
Q Consensus       102 -t~~~~v~~~~~v---~~-p~i~~~~~~de~~~~y~G-------~~~~~~~l~~fi~~  147 (216)
                       ..+++++++|++   .. |++++|.+..+....+.|       .. +.+.|.+|+..
T Consensus        74 ~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~-~~~~l~~~l~~  130 (133)
T 3fk8_A           74 FDRNLELSQAYGDPIQDGIPAVVVVNSDGKVRYTTKGGELANARKM-SDQGIYDFFAK  130 (133)
T ss_dssp             TTSSHHHHHHTTCGGGGCSSEEEEECTTSCEEEECCSCTTTTGGGS-CHHHHHHHHHH
T ss_pred             ccchHHHHHHhCCccCCccceEEEECCCCCEEEEecCCcccccccC-CHHHHHHHHHH
Confidence             567889999999   76 999999432232334455       35 88999999875

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=97.68  E-value=2e-05  Score=71.11  Aligned_cols=96  Identities=14%  Similarity=0.196  Sum_probs=70.5

Q ss_pred             ceeecCHHHHHHhHhCC--CeEEEEEecCCC---hhHHHHHHHHHhhCC---------CceEEecchhhHHHHhhhhccc
Q psy7942          30 AKEFTSVDEIKAFIADS--KVVVAGLFKDAS---SELAKTFNEIASKVD---------DLVFDASSELAKTFNEIASKVD   95 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~--~v~~V~f~~~~~---~~~~~~f~~~A~~~~---------~~~F~~~~~~~~~~~~~~~~~~   95 (216)
                      +..++. ++++.++..+  ++++|.|+++||   ....+.|.+++..+.         .+.|+              .||
T Consensus        25 V~~Lt~-~~F~~~l~~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~--------------~VD   89 (470)
T 3qcp_A           25 VVDLSG-DDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAA--------------AVN   89 (470)
T ss_dssp             EEECSC-SCGGGTCTTGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEE--------------EEE
T ss_pred             cEECCH-HHHHHHHHhCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEE--------------EEE
Confidence            556654 6788877653  689999999998   456779999999883         37787              566


Q ss_pred             cceeeecccHHHHHhcCCCC-CeEEEEecCC-CCcccccCCCCCHHHHHHHHhh
Q psy7942          96 DLVFVTSTNADILAEYSVDD-DTVAIFKKFD-EGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus        96 ~~~~~~t~~~~v~~~~~v~~-p~i~~~~~~d-e~~~~y~G~~~~~~~l~~fi~~  147 (216)
                           +..+++++++|+|.. |++++|++.. .....|.|.. +.+.| .||..
T Consensus        90 -----~d~~~~la~~y~V~~~PTlilf~~gg~~~~~~y~G~r-~~e~L-~fI~k  136 (470)
T 3qcp_A           90 -----CASEVDLCRKYDINFVPRLFFFYPRDSCRSNEECGTS-SLEHV-AFENS  136 (470)
T ss_dssp             -----TTTCHHHHHHTTCCSSCEEEEEEESSCCCTTSCCCCC-CEEEE-ECSCT
T ss_pred             -----CCCCHHHHHHcCCCccCeEEEEECCCceEEEEeeCCC-CHHHH-HHHHH
Confidence                 777889999999986 9999998643 2356788875 44444 44433

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=97.63  E-value=0.00015  Score=48.55  Aligned_cols=77  Identities=17%  Similarity=0.285  Sum_probs=58.7

Q ss_pred             CeEEEEEecCCC---hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeEEEE
Q psy7942          47 KVVVAGLFKDAS---SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAIF  121 (216)
Q Consensus        47 ~v~~V~f~~~~~---~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~  121 (216)
                      .+.++.|+.+||   ....+.+.+++.++ +++.|.              .+|     ...+++++++|++.. |++++ 
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~--------------~vd-----~~~~~~~~~~~~v~~~Pt~~~-   62 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVE--------------YIN-----VMENPQKAMEYGIMAVPTIVI-   62 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEE--------------EEE-----SSSSCCTTTSTTTCCSSEEEE-
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEE--------------EEE-----CCCCHHHHHHCCCcccCEEEE-
Confidence            467888999886   56778889999888 477777              344     455678899999986 99998 


Q ss_pred             ecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         122 KKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       122 ~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                       +  +.. .+.|.. +.+.|.+||...
T Consensus        63 -~--G~~-~~~G~~-~~~~l~~~l~~~   84 (85)
T 1fo5_A           63 -N--GDV-EFIGAP-TKEALVEAIKKR   84 (85)
T ss_dssp             -T--TEE-ECCSSS-SSHHHHHHHHHH
T ss_pred             -C--CEE-eeecCC-CHHHHHHHHHHh
Confidence             2  323 788887 889999998753

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=97.61  E-value=0.00098  Score=54.13  Aligned_cols=118  Identities=15%  Similarity=0.210  Sum_probs=73.6

Q ss_pred             CCcccCCCCCChHHHHHHHHhhhCCCce---------eecCHHHHHHhHhC--CCeEEEEEecCCChhHHHHHHHHHhhC
Q psy7942           4 CLPGERRGGRTAEDIVNWLLKKTGPPAK---------EFTSVDEIKAFIAD--SKVVVAGLFKDASSELAKTFNEIASKV   72 (216)
Q Consensus         4 g~~~~Y~G~Rta~~iv~~l~~~~~~~v~---------~l~s~~~~~~~~~~--~~v~~V~f~~~~~~~~~~~f~~~A~~~   72 (216)
                      |....|.| ++.+.|.+|+.+.+.....         ...+.++++.++..  .+...+. |.+.++..   ..+++..+
T Consensus       105 g~~~~~~g-~~~~~l~~~i~~~l~~~~~~~p~~~p~l~~~~~~~l~~~~~~~~~~~~al~-f~~~~~~~---~~~~~~d~  179 (244)
T 3q6o_A          105 GAVFPVAG-ADVQTLRERLIDALESHHDTWPPACPPLEPAXLEEIDGFFARNNEEYLALI-FEXGGSYL---AREVALDL  179 (244)
T ss_dssp             CEECCCTT-CCHHHHHHHHHHHHHTCTTSCCTTSCCCSCCCHHHHHTHHHHCCCSEEEEE-EECTTCCH---HHHHHHHT
T ss_pred             CeeEecCC-CCHHHHHHHHHHHHHhccccCCCCCCCcccccHHHHHHHhhcCCCceEEEE-EEECCcch---HHHHHHHh
Confidence            44555655 8999999999988754321         23456889888753  3444444 44444322   23334444


Q ss_pred             ---CCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942          73 ---DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus        73 ---~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                         ..+.++.              +      ...++.++++|+++. |+++++.+ ++....++....+.+.+..+++.
T Consensus       180 ~~~~~i~v~~--------------~------~~~~~~l~~~f~v~~~Pslvl~~~-~g~~~~~~~~~~~r~~~~~~l~~  237 (244)
T 3q6o_A          180 SQHKGVAVRR--------------V------LNTEANVVRKFGVTDFPSCYLLFR-NGSVSRVPVLMESRSFYTAYLQR  237 (244)
T ss_dssp             TTCTTEEEEE--------------E------ETTCHHHHHHHTCCCSSEEEEEET-TSCEEECCCSSSSHHHHHHHHHT
T ss_pred             ccCCceEEEE--------------E------eCchHHHHHHcCCCCCCeEEEEeC-CCCeEeeccccccHHHHHHHHHh
Confidence               4455550              1      334488999999986 99999886 44456666444367777777764

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=97.54  E-value=0.00021  Score=47.75  Aligned_cols=76  Identities=14%  Similarity=0.239  Sum_probs=57.4

Q ss_pred             eEEEEEecCCC---hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeEEEEe
Q psy7942          48 VVVAGLFKDAS---SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAIFK  122 (216)
Q Consensus        48 v~~V~f~~~~~---~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~  122 (216)
                      +.+|.|+.+||   ....+.+.+++.++ +++.|.              .++     ...+++++++|++.. |++++  
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~--------------~vd-----~~~~~~~~~~~~v~~~Pt~~~--   61 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVE--------------KID-----IMVDREKAIEYGLMAVPAIAI--   61 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEE--------------EEC-----TTTCGGGGGGTCSSCSSEEEE--
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEE--------------EEE-----CCCCHHHHHhCCceeeCEEEE--
Confidence            45777888886   56677888888887 467777              344     556778999999986 99998  


Q ss_pred             cCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         123 KFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       123 ~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                        ++.. .+.|.. +.+.|.+||...
T Consensus        62 --~G~~-~~~G~~-~~~~l~~~l~~~   83 (85)
T 1nho_A           62 --NGVV-RFVGAP-SREELFEAINDE   83 (85)
T ss_dssp             --TTTE-EEECSS-CCHHHHHHHHHH
T ss_pred             --CCEE-EEccCC-CHHHHHHHHHHH
Confidence              2333 688887 788999998764

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=97.50  E-value=0.00031  Score=51.01  Aligned_cols=87  Identities=17%  Similarity=0.189  Sum_probs=57.9

Q ss_pred             hCCCeEEEEEecCCChhH---HHHH---HHHHhhC-CCceEEecchhhHHHHhhhhccccceeeec--ccHHHHHhcCCC
Q psy7942          44 ADSKVVVAGLFKDASSEL---AKTF---NEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTS--TNADILAEYSVD  114 (216)
Q Consensus        44 ~~~~v~~V~f~~~~~~~~---~~~f---~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t--~~~~v~~~~~v~  114 (216)
                      ..+++++|.|+.+||...   .+.+   ..++..+ ..+.+.              .++     ..  .+..++++|++.
T Consensus        25 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~--------------~vd-----~~~~~~~~~~~~~~v~   85 (130)
T 2kuc_A           25 VEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNL--------------KMD-----MEKGEGVELRKKYGVH   85 (130)
T ss_dssp             HHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEE--------------EEC-----SSSTTHHHHHHHTTCC
T ss_pred             hcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEE--------------EEe-----cCCcchHHHHHHcCCC
Confidence            467889999999998543   3344   3344333 344444              222     32  356789999998


Q ss_pred             C-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCC
Q psy7942         115 D-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSL  150 (216)
Q Consensus       115 ~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~  150 (216)
                      . |+++++.+.......+.|.. +.+.|.+||....-
T Consensus        86 ~~Pt~~~~d~~G~~~~~~~G~~-~~~~l~~~l~~~~~  121 (130)
T 2kuc_A           86 AYPTLLFINSSGEVVYRLVGAE-DAPELLKKVKLGVE  121 (130)
T ss_dssp             SSCEEEEECTTSCEEEEEESCC-CHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCcEEEEecCCC-CHHHHHHHHHHHHH
Confidence            6 99999954223234577988 89999999987643

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=97.08  E-value=0.0088  Score=45.18  Aligned_cols=107  Identities=16%  Similarity=0.188  Sum_probs=65.1

Q ss_pred             HHHhhhCCCceeecCHHHHHHhHhCCCeEEEEEecCCC----hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccc
Q psy7942          21 WLLKKTGPPAKEFTSVDEIKAFIADSKVVVAGLFKDAS----SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVD   95 (216)
Q Consensus        21 ~l~~~~~~~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~----~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~   95 (216)
                      .|++..-|.|.+++. +....+.++.-...+.+|.+.+    ......|.++|+.+ +.+.|..              +|
T Consensus         7 ~~~~~~~PLV~e~t~-en~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkgki~Fv~--------------vd   71 (147)
T 3bj5_A            7 HMKHNQLPLVIEFTE-QTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAF--------------ID   71 (147)
T ss_dssp             --------CEEECCT-TTHHHHHSSSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTTTCEEEE--------------EC
T ss_pred             chhhccCCeeEEecc-ccHHHHhcCCCceEEEEEecCCcHhHHHHHHHHHHHHHHcCCceEEEE--------------Ee
Confidence            356666788888864 5567776554444444454322    23567899999999 6788872              22


Q ss_pred             cceeee--cccHHHHHhcCCC---CCeEEEEec-CCCCccccc-CCCCCHHHHHHHHhhc
Q psy7942          96 DLVFVT--STNADILAEYSVD---DDTVAIFKK-FDEGRVNYE-GPASDEAALRKFLSTQ  148 (216)
Q Consensus        96 ~~~~~~--t~~~~v~~~~~v~---~p~i~~~~~-~de~~~~y~-G~~~~~~~l~~fi~~~  148 (216)
                           .  .....+++.+|++   .|+|+++.. .+.....+. |++ +.+.|.+|+...
T Consensus        72 -----~~~~~~~~~l~~fGl~~~~~P~v~i~~~~~~~~Ky~~~~~~~-t~~~i~~Fv~d~  125 (147)
T 3bj5_A           72 -----SDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEEL-TAERITEFCHRF  125 (147)
T ss_dssp             -----TTCGGGHHHHHHTTCCGGGCSEEEEEECSSSCEEECCSCCCC-CHHHHHHHHHHH
T ss_pred             -----cchHhHHHHHHHcCCCcccCCEEEEEecccccccCCCCcccC-CHHHHHHHHHHH
Confidence                 2  2233577889987   499998874 233233444 788 899999999865

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=97.03  E-value=0.0057  Score=43.96  Aligned_cols=102  Identities=12%  Similarity=0.126  Sum_probs=64.3

Q ss_pred             CCCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEE-e-cchhhHHHHhhhhcccc-ceeeecccHHHHHhcCCCC-Ce
Q psy7942          45 DSKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFD-A-SSELAKTFNEIASKVDD-LVFVTSTNADILAEYSVDD-DT  117 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~-~-~~~~~~~~~~~~~~~~~-~~~~~t~~~~v~~~~~v~~-p~  117 (216)
                      .+++++|.|+.+||.   ...+.+.+++.++.++.|. + +......+.+.+.+..- .-.+...+.++++.|++.. |+
T Consensus        23 ~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~  102 (136)
T 1lu4_A           23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPA  102 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSSE
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHCCCcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCCCCE
Confidence            467888889999984   4456777777777655543 1 11223333333333321 1111223567899999986 99


Q ss_pred             EEEEecCCCCccccc---CCCCCHHHHHHHHhhc
Q psy7942         118 VAIFKKFDEGRVNYE---GPASDEAALRKFLSTQ  148 (216)
Q Consensus       118 i~~~~~~de~~~~y~---G~~~~~~~l~~fi~~~  148 (216)
                      ++++.+...-. .+.   |.. +.+.|.++|...
T Consensus       103 ~~lid~~G~i~-~~~~~~g~~-~~~~l~~~l~~l  134 (136)
T 1lu4_A          103 FVFYRADGTST-FVNNPTAAM-SQDELSGRVAAL  134 (136)
T ss_dssp             EEEECTTSCEE-EECCSSSCC-CHHHHHHHHHHC
T ss_pred             EEEECCCCcEE-EEEcCCCcc-CHHHHHHHHHHH
Confidence            99996533323 677   888 899999999864

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=96.88  E-value=0.011  Score=42.16  Aligned_cols=102  Identities=13%  Similarity=0.173  Sum_probs=64.6

Q ss_pred             CCCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEe--cchhhHHHHhhhhccc--cceeeecccHHHHHhcCCCC-C
Q psy7942          45 DSKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDA--SSELAKTFNEIASKVD--DLVFVTSTNADILAEYSVDD-D  116 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~--~~~~~~~~~~~~~~~~--~~~~~~t~~~~v~~~~~v~~-p  116 (216)
                      .+++++|.|+.+||.   ...+.+.+++.++.++.|..  +......+.+.+.+..  +.-.+...+..+++.|++.. |
T Consensus        24 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  103 (136)
T 1zzo_A           24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQP  103 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSSS
T ss_pred             CCCeEEEEEEcCCChhHHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCCCCCc
Confidence            467888889999984   44567777777775555431  1122333333333332  11111234567899999986 9


Q ss_pred             eEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         117 TVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       117 ~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      +++++.+...-. .+.|.. +.+.|.++|...
T Consensus       104 ~~~~id~~g~i~-~~~g~~-~~~~l~~~l~~~  133 (136)
T 1zzo_A          104 AYAFVDPHGNVD-VVRGRM-SQDELTRRVTAL  133 (136)
T ss_dssp             EEEEECTTCCEE-EEESCC-CHHHHHHHHHHH
T ss_pred             eEEEECCCCCEE-EEecCC-CHHHHHHHHHHH
Confidence            999997533323 688988 899999998764

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=96.84  E-value=0.0034  Score=47.86  Aligned_cols=40  Identities=8%  Similarity=0.036  Sum_probs=29.7

Q ss_pred             HHhcCCCC-CeEEEEecCCCCcccccCCCCC-HHHHHHHHhhc
Q psy7942         108 LAEYSVDD-DTVAIFKKFDEGRVNYEGPASD-EAALRKFLSTQ  148 (216)
Q Consensus       108 ~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~-~~~l~~fi~~~  148 (216)
                      ++.|++.+ |+++++.+..+....+.|.. + .+.+.+||...
T Consensus       123 ~~~~~v~~~Pt~~lid~~G~~~~~~~G~~-~~~~~l~~~l~~~  164 (172)
T 3f9u_A          123 RVKFGANAQPFYVLIDNEGNPLNKSYAYD-EDISKYINFLQTG  164 (172)
T ss_dssp             HHHHSCCCSSEEEEECTTSCBSSCCBCSC-CCHHHHHHHHHHH
T ss_pred             HHHcCCCCcceEEEECCCCCEEeeccCCC-CCHHHHHHHHHHH
Confidence            57899986 99999964333344567888 6 99999998763

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=96.83  E-value=0.0015  Score=46.53  Aligned_cols=75  Identities=13%  Similarity=0.042  Sum_probs=49.2

Q ss_pred             CeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeec--ccHHHHHhcCCCC-CeEEE
Q psy7942          47 KVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTS--TNADILAEYSVDD-DTVAI  120 (216)
Q Consensus        47 ~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t--~~~~v~~~~~v~~-p~i~~  120 (216)
                      ++.+|.|+++||.   ...+.|.++|..+.   +.              .++.   ...  .+++++++|++.. |++++
T Consensus        13 k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~---~v--------------~~~~---~~~~~~~~~l~~~~~V~~~PT~~i   72 (106)
T 3kp8_A           13 QIGGTMYGAYWCPHCQDQKELFGAAFDQVP---YV--------------ECSP---NGPGTPQAQECTEAGITSYPTWII   72 (106)
T ss_dssp             HHTCEEEECTTCHHHHHHHHHHGGGGGGSC---EE--------------ESCT---TCTTSCCCHHHHHTTCCSSSEEEE
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHHHHHhCC---EE--------------EEec---ccccchhHHHHHHcCCeEeCEEEE
Confidence            4457778999984   44556666665553   22              0100   011  4678999999987 99877


Q ss_pred             EecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         121 FKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       121 ~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                        +  +.  .|.|.. +.+.|.+|+.-.
T Consensus        73 --~--G~--~~~G~~-~~~~l~~~~~~~   93 (106)
T 3kp8_A           73 --N--GR--TYTGVR-SLEALAVASGYP   93 (106)
T ss_dssp             --T--TE--EEESCC-CHHHHHHHHTCC
T ss_pred             --C--CE--EecCCC-CHHHHHHHhCCc
Confidence              2  22  489998 999999998543

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=95.73  E-value=0.00025  Score=51.54  Aligned_cols=92  Identities=12%  Similarity=0.132  Sum_probs=60.0

Q ss_pred             HHHHHhHhCCCeEEEEEecCCChh---HHHHH---HHHHhhC-CCceEEecchhhHHHHhhhhccccceeee--cccHHH
Q psy7942          37 DEIKAFIADSKVVVAGLFKDASSE---LAKTF---NEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVT--STNADI  107 (216)
Q Consensus        37 ~~~~~~~~~~~v~~V~f~~~~~~~---~~~~f---~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~--t~~~~v  107 (216)
                      +.+......+++++|.|+.+||..   ..+.+   .+++..+ .++.|.              .++     .  ..+.++
T Consensus        10 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~--------------~vd-----~~~~~~~~~   70 (130)
T 2lst_A           10 EALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVA--------------SVS-----VDTPEGQEL   70 (130)
Confidence            344445557788999999999743   34455   5566555 345554              222     2  234578


Q ss_pred             HHhcCCCC-CeEEEEecCCCC---cccccCCCCCHHHHHHHHhhc
Q psy7942         108 LAEYSVDD-DTVAIFKKFDEG---RVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       108 ~~~~~v~~-p~i~~~~~~de~---~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      +++|++.. |++++|.+.++.   ...+.|.. +.+.|.+||...
T Consensus        71 ~~~~~v~~~Pt~~~~d~~~G~~~~~~~~~G~~-~~~~l~~~l~~~  114 (130)
T 2lst_A           71 ARRYRVPGTPTFVFLVPKAGAWEEVGRLFGSR-PRAEFLKELRQV  114 (130)
Confidence            89999986 999999532222   34578887 778888888754

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=96.70  E-value=0.0044  Score=44.59  Aligned_cols=74  Identities=8%  Similarity=0.097  Sum_probs=54.2

Q ss_pred             eEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCCCeEEEEecC
Q psy7942          48 VVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKF  124 (216)
Q Consensus        48 v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~p~i~~~~~~  124 (216)
                      ..++.|+.+||.   ...+.+.+++..+. +.|.              .+|     ...+++++++|++..|+|++|.. 
T Consensus        30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~-i~~~--------------~vD-----Id~d~~l~~~ygv~VP~l~~~~d-   88 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMIASLRVLQKKSW-FELE--------------VIN-----IDGNEHLTRLYNDRVPVLFAVNE-   88 (107)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHHHHHSC-CCCE--------------EEE-----TTTCHHHHHHSTTSCSEEEETTT-
T ss_pred             cEEEEEeCCCChhHHHHHHHHHHHHHhcC-CeEE--------------EEE-----CCCCHHHHHHhCCCCceEEEEEC-
Confidence            456678889983   44556667777663 5665              344     56688999999998899999884 


Q ss_pred             CCCcccccCCCCCHHHHHHHH
Q psy7942         125 DEGRVNYEGPASDEAALRKFL  145 (216)
Q Consensus       125 de~~~~y~G~~~~~~~l~~fi  145 (216)
                       + ...+.|.+ +.+.|.+||
T Consensus        89 -G-~~v~~g~~-~~~~L~~~L  106 (107)
T 2fgx_A           89 -D-KELCHYFL-DSDVIGAYL  106 (107)
T ss_dssp             -T-EEEECSSC-CCHHHHHHH
T ss_pred             -C-EEEEecCC-CHHHHHHHh
Confidence             3 33456888 888999987

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=96.68  E-value=0.013  Score=42.38  Aligned_cols=101  Identities=9%  Similarity=0.149  Sum_probs=62.8

Q ss_pred             CCCeEEEEEecCCCh---hHHHHHHHHHhhCC--CceEEe--cc---hhhHHHHhhhhcccc-ceeeecccHHHHHhcCC
Q psy7942          45 DSKVVVAGLFKDASS---ELAKTFNEIASKVD--DLVFDA--SS---ELAKTFNEIASKVDD-LVFVTSTNADILAEYSV  113 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~--~~~F~~--~~---~~~~~~~~~~~~~~~-~~~~~t~~~~v~~~~~v  113 (216)
                      .+++++|.|+.+||.   ...+.+.+++.++.  ++.|..  +.   ...+.+...+.+.+- .-.+...+..+++.|++
T Consensus        33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  112 (145)
T 3erw_A           33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKEYHI  112 (145)
T ss_dssp             TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHhcCc
Confidence            567899999999984   44567788888873  555431  11   122233333222221 11112345678999999


Q ss_pred             CC-CeEEEEecCCCCcccccCCCCCHHHHHHHHh
Q psy7942         114 DD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLS  146 (216)
Q Consensus       114 ~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~  146 (216)
                      .. |+++++.+...-...+.|.. +.+.|.++|.
T Consensus       113 ~~~P~~~lid~~G~i~~~~~g~~-~~~~l~~~l~  145 (145)
T 3erw_A          113 ITIPTSFLLNEKGEIEKTKIGPM-TAEQLKEWTE  145 (145)
T ss_dssp             CEESEEEEECTTCCEEEEEESCC-CHHHHHHHHC
T ss_pred             CccCeEEEEcCCCcEEEEEcCCc-CHHHHHHhhC
Confidence            86 99999964333234578888 8999998873

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=96.64  E-value=0.025  Score=41.76  Aligned_cols=103  Identities=8%  Similarity=0.092  Sum_probs=62.9

Q ss_pred             CCCeEEEEEecCCCh---hHHHHHHHHHhhC--CCceEE-ecchhhHHHHhhhhcccc-c-eee--ecccHHHHHhcC--
Q psy7942          45 DSKVVVAGLFKDASS---ELAKTFNEIASKV--DDLVFD-ASSELAKTFNEIASKVDD-L-VFV--TSTNADILAEYS--  112 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~--~~~~F~-~~~~~~~~~~~~~~~~~~-~-~~~--~t~~~~v~~~~~--  112 (216)
                      .+++++|.|+.+||.   ...+.+.+++.++  .++.|. ++-...+.+.+.+.+.+- . ++.  ......+++.|+  
T Consensus        23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (151)
T 3raz_A           23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNT  102 (151)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHHHTTTCC
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHHHHhCCc
Confidence            568999999999985   4466777777777  345442 221222223333322221 0 111  112356788898  


Q ss_pred             CCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         113 VDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       113 v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      +.. |+++++.+...-...|.|.. +.+.|.++|...
T Consensus       103 v~~~P~~~lid~~G~i~~~~~g~~-~~~~l~~~l~~l  138 (151)
T 3raz_A          103 VGVLPFTVVEAPKCGYRQTITGEV-NEKSLTDAVKLA  138 (151)
T ss_dssp             SCCSSEEEEEETTTTEEEECCSCC-CHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCcEEEEECCCC-CHHHHHHHHHHH
Confidence            765 99999875333345678988 899999998753

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=96.56  E-value=0.019  Score=37.19  Aligned_cols=69  Identities=17%  Similarity=0.290  Sum_probs=49.1

Q ss_pred             EEEEecCCC---hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeEEEEecC
Q psy7942          50 VAGLFKDAS---SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAIFKKF  124 (216)
Q Consensus        50 ~V~f~~~~~---~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~~  124 (216)
                      .|.||.+||   ....+.+.+++..+ .++.+.                      ...+.+++++|++.. |++++    
T Consensus         3 ~v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~----------------------~v~~~~~~~~~~v~~~Pt~~~----   56 (77)
T 1ilo_A            3 KIQIYGTGCANCQMLEKNAREAVKELGIDAEFE----------------------KIKEMDQILEAGLTALPGLAV----   56 (77)
T ss_dssp             EEEEECSSSSTTHHHHHHHHHHHHHTTCCEEEE----------------------EECSHHHHHHHTCSSSSCEEE----
T ss_pred             EEEEEcCCChhHHHHHHHHHHHHHHcCCceEEE----------------------EecCHHHHHHCCCCcCCEEEE----
Confidence            466788886   45667788888887 467666                      333788999999986 99998    


Q ss_pred             CCCcccccCCCCCHHHHHHHH
Q psy7942         125 DEGRVNYEGPASDEAALRKFL  145 (216)
Q Consensus       125 de~~~~y~G~~~~~~~l~~fi  145 (216)
                      ++ ...+.|...+.+.|.+|+
T Consensus        57 ~G-~~~~~G~~~~~~~l~~~l   76 (77)
T 1ilo_A           57 DG-ELKIMGRVASKEEIKKIL   76 (77)
T ss_dssp             TT-EEEECSSCCCHHHHHHHC
T ss_pred             CC-EEEEcCCCCCHHHHHHHh
Confidence            23 333447632678888886

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=96.55  E-value=0.024  Score=40.20  Aligned_cols=102  Identities=21%  Similarity=0.224  Sum_probs=64.3

Q ss_pred             CCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEE-e------cchhhHHHHhhhhccc--cceeeecccHHHHHhc
Q psy7942          45 DSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFD-A------SSELAKTFNEIASKVD--DLVFVTSTNADILAEY  111 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~-~------~~~~~~~~~~~~~~~~--~~~~~~t~~~~v~~~~  111 (216)
                      .+++++|.|+.+||.   ...+.+.+++.++ +++.|. +      .....+.+...+.+.+  ..-.....+..+++.|
T Consensus        21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  100 (138)
T 4evm_A           21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETY  100 (138)
T ss_dssp             TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCHHHHHT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchHHHHHc
Confidence            467889999999984   4455667777766 345433 2      1223334444433332  1111133456789999


Q ss_pred             CCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942         112 SVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       112 ~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                      ++.. |+++++.+...-...+.|.. +.+.|.++|..
T Consensus       101 ~v~~~P~~~lid~~G~i~~~~~g~~-~~~~l~~~l~~  136 (138)
T 4evm_A          101 GVRSYPTQAFIDKEGKLVKTHPGFM-EKDAILQTLKE  136 (138)
T ss_dssp             TCCSSSEEEEECTTCCEEEEEESCC-CHHHHHHHHHH
T ss_pred             CcccCCeEEEECCCCcEEEeecCCC-cHHHHHHHHHh
Confidence            9986 99999965333334577888 88999999875

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=96.50  E-value=0.0033  Score=48.10  Aligned_cols=102  Identities=11%  Similarity=-0.007  Sum_probs=59.4

Q ss_pred             hCCCceeecCHHHHHHhHhCCCeEEEEEecCCChhH---HHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeee
Q psy7942          26 TGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASSEL---AKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVT  101 (216)
Q Consensus        26 ~~~~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~~~---~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      .++.+.-.+-.+.++.....+++++|.|+.+||...   .+.|.+++... ..+.|.              .|+     .
T Consensus        26 ~~~~i~w~~~~~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~--------------~v~-----~   86 (164)
T 1sen_A           26 FGDHIHWRTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFV--------------MVN-----L   86 (164)
T ss_dssp             SCTTSCBCCHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSE--------------EEE-----E
T ss_pred             ccccccccCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEE--------------EEE-----e
Confidence            344443322235566667778999999999998543   44555544333 223333              122     3


Q ss_pred             cccHH-HHHhcCC--C-CCeEEEEecCCCCcccccCC----------CCCHHHHHHHHhh
Q psy7942         102 STNAD-ILAEYSV--D-DDTVAIFKKFDEGRVNYEGP----------ASDEAALRKFLST  147 (216)
Q Consensus       102 t~~~~-v~~~~~v--~-~p~i~~~~~~de~~~~y~G~----------~~~~~~l~~fi~~  147 (216)
                      ..+++ ++..+++  . .|++++|.+.......+.|.          . +.+.|.++|..
T Consensus        87 d~~~~~~~~~~~~~~~~~Pt~~~~d~~G~~~~~~~G~~~~~~~~~~~~-~~~~l~~~l~~  145 (164)
T 1sen_A           87 EDEEEPKDEDFSPDGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYV-SAEQVVQGMKE  145 (164)
T ss_dssp             EGGGSCSCGGGCTTCSCSSEEEEECTTSCBCTTCCCTTSCTTSTTCCC-SHHHHHHHHHH
T ss_pred             cCCchHHHHHhcccCCcCCeEEEECCCCCEEEEEeCCCCccchhcccC-CHHHHHHHHHH
Confidence            33444 6677777  3 39999994322223335553          4 78888888875

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=96.37  E-value=0.016  Score=42.02  Aligned_cols=103  Identities=16%  Similarity=0.137  Sum_probs=61.8

Q ss_pred             CCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEE-ec-ch-----hhHHHHhhhhcccc-ceeeecccHHHHHhcC
Q psy7942          45 DSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFD-AS-SE-----LAKTFNEIASKVDD-LVFVTSTNADILAEYS  112 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~-~~-~~-----~~~~~~~~~~~~~~-~~~~~t~~~~v~~~~~  112 (216)
                      .+++++|.|+.+||.   ...+.+.+++.++ +.+.|. ++ ..     ....+.+.+.+..- .-++...+..+++.|+
T Consensus        28 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  107 (148)
T 2b5x_A           28 GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFE  107 (148)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHHTC
T ss_pred             CCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchhHHHHhC
Confidence            567888889999984   4456777777776 336553 11 00     22333333333221 1111233567899999


Q ss_pred             CCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         113 VDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       113 v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      +.. |+++++.+...-...+.|.. +.+.|.++|...
T Consensus       108 v~~~P~~~lid~~G~i~~~~~g~~-~~~~l~~~l~~~  143 (148)
T 2b5x_A          108 NEYVPAYYVFDKTGQLRHFQAGGS-GMKMLEKRVNRV  143 (148)
T ss_dssp             CCCSSEEEEECTTCBEEEEEESCS-TTHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCcEEEEecCCC-CHHHHHHHHHHH
Confidence            986 99999954222233457877 778888888753

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.31  E-value=0.031  Score=41.06  Aligned_cols=103  Identities=11%  Similarity=0.108  Sum_probs=64.2

Q ss_pred             CCCeEEEEEecCCCh---hHHHHHHHHHhhC--CCceEE-ec--chhhHHHHhhhhcccc-ceeeecccHHHHHhcCCCC
Q psy7942          45 DSKVVVAGLFKDASS---ELAKTFNEIASKV--DDLVFD-AS--SELAKTFNEIASKVDD-LVFVTSTNADILAEYSVDD  115 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~--~~~~F~-~~--~~~~~~~~~~~~~~~~-~~~~~t~~~~v~~~~~v~~  115 (216)
                      .+++++|.|+..||.   ...+.+.+++.++  ..+.|. ++  ......+...+.+..- .-.....+..+++.|++..
T Consensus        27 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~  106 (153)
T 2l5o_A           27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQV  106 (153)
T ss_dssp             TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCCc
Confidence            567888999999884   4456777777777  235442 21  1223333333333321 1111344667899999986


Q ss_pred             -CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         116 -DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       116 -p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                       |+++++.+...-...|.|.. +.+.|.++|...
T Consensus       107 ~P~~~lid~~G~i~~~~~g~~-~~~~l~~~l~~l  139 (153)
T 2l5o_A          107 YPTSVLIGKKGEILKTYVGEP-DFGKLYQEIDTA  139 (153)
T ss_dssp             SSEEEEECSSSCCCEEEESSC-CHHHHHHHHHHH
T ss_pred             cCeEEEECCCCcEEEEEcCCC-CHHHHHHHHHHH
Confidence             99999965333334578887 889999988753

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=96.17  E-value=0.067  Score=48.62  Aligned_cols=115  Identities=12%  Similarity=0.207  Sum_probs=71.9

Q ss_pred             ccCCCCCChHHHHHHHHhhhCCCc----------eeecCHHHHHHhHhC--CCeEEEEEecCCChhHHHHHHHHHhhC--
Q psy7942           7 GERRGGRTAEDIVNWLLKKTGPPA----------KEFTSVDEIKAFIAD--SKVVVAGLFKDASSELAKTFNEIASKV--   72 (216)
Q Consensus         7 ~~Y~G~Rta~~iv~~l~~~~~~~v----------~~l~s~~~~~~~~~~--~~v~~V~f~~~~~~~~~~~f~~~A~~~--   72 (216)
                      ..+.|+++.+.|.+++.+.+....          ..+ +.++++.++..  .+.+++. |.+.++...   .+++..+  
T Consensus       107 ~~~~g~~~~~~L~~~l~~~l~~~~~~~P~~~p~l~~i-t~~~l~~~l~~~~~~~vall-F~~~~s~~~---~~~~ldl~~  181 (519)
T 3t58_A          107 TLPGAGANVQTLRMRLIDALESHRDTWPPACPPLEPA-KLNDIDGFFTRNKADYLALV-FEREDSYLG---REVTLDLSQ  181 (519)
T ss_dssp             EECCSSCCHHHHHHHHHHHHTTCCSCCCTTCCCCSBC-CHHHHTTGGGSCCCSEEEEE-EECTTCCHH---HHHHHHTTT
T ss_pred             eEecCCCCHHHHHHHHHHHHhhccccCCCCCCccCcC-CHHHHHHHhccCCCCeEEEE-ecCCchHHH---HHHHHHhhc
Confidence            457789999999999998886422          333 56888888865  3344444 445444332   3334444  


Q ss_pred             -CCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942          73 -DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus        73 -~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                       ..+.++.                    +...+.+++++|+|+. |+++++.+. +....+.......+.+..+++.
T Consensus       182 ~~~v~v~~--------------------v~~~~~~l~~kfgV~~~Pslvl~~~n-Gk~~~~~v~~~~r~~~~~~l~~  237 (519)
T 3t58_A          182 YHAVAVRR--------------------VLNTESDLVNKFGVTDFPSCYLLLRN-GSVSRVPVLVESRSFYTSYLRG  237 (519)
T ss_dssp             CTTEEEEE--------------------EETTCHHHHHHHTCCCSSEEEEEETT-SCEEECCCSSCSHHHHHHHHTT
T ss_pred             cCCeeEEE--------------------ecCchHHHHHHcCCCCCCeEEEEeCC-CceeecccccccHHHHHHHHHH
Confidence             4455551                    1444578999999985 999999863 3333333333245667778775

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=96.13  E-value=0.011  Score=46.13  Aligned_cols=85  Identities=19%  Similarity=0.205  Sum_probs=60.0

Q ss_pred             HHHHhhhCCCceeec-CHHHHHHhHhCCCeEEEEEecCCChhHHH----HH--HHHHhhC-CCceEEecchhhHHHHhhh
Q psy7942          20 NWLLKKTGPPAKEFT-SVDEIKAFIADSKVVVAGLFKDASSELAK----TF--NEIASKV-DDLVFDASSELAKTFNEIA   91 (216)
Q Consensus        20 ~~l~~~~~~~v~~l~-s~~~~~~~~~~~~v~~V~f~~~~~~~~~~----~f--~~~A~~~-~~~~F~~~~~~~~~~~~~~   91 (216)
                      -|++.+...+|.=.. +.+.++.....+++++|-|+.+||.....    .|  .+++..+ +++.+.             
T Consensus        12 pyl~~ha~~~v~W~~~~~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~i-------------   78 (173)
T 3ira_A           12 PYLLQHAYNPVDWYPWGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSI-------------   78 (173)
T ss_dssp             HHHHTTTTSSSCCBCSSHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEE-------------
T ss_pred             HHHHhccCCCCCCCCcCHHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCcee-------------
Confidence            477888777775433 46788888888999999999999965433    23  2445544 345555             


Q ss_pred             hccccceeeecccHHHHHhc--------CCCC-CeEEEEec
Q psy7942          92 SKVDDLVFVTSTNADILAEY--------SVDD-DTVAIFKK  123 (216)
Q Consensus        92 ~~~~~~~~~~t~~~~v~~~~--------~v~~-p~i~~~~~  123 (216)
                       .||     ....+++.+.|        ++.+ |+++++.+
T Consensus        79 -kVD-----~de~~~l~~~y~~~~q~~~gv~g~Pt~v~l~~  113 (173)
T 3ira_A           79 -KVD-----REERPDIDNIYMTVCQIILGRGGWPLNIIMTP  113 (173)
T ss_dssp             -EEE-----TTTCHHHHHHHHHHHHHHHSCCCSSEEEEECT
T ss_pred             -eeC-----CcccCcHHHHHHHHHHHHcCCCCCcceeeECC
Confidence             444     55567888877        8876 99999985

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=96.09  E-value=0.036  Score=40.60  Aligned_cols=103  Identities=9%  Similarity=0.129  Sum_probs=61.8

Q ss_pred             CCCeEEEEEecCCC---hhHHHHHHHHHhhCC--CceEE-e-cchhhHHHHhhhhcccc--ceeeecccHHHHHhcCCCC
Q psy7942          45 DSKVVVAGLFKDAS---SELAKTFNEIASKVD--DLVFD-A-SSELAKTFNEIASKVDD--LVFVTSTNADILAEYSVDD  115 (216)
Q Consensus        45 ~~~v~~V~f~~~~~---~~~~~~f~~~A~~~~--~~~F~-~-~~~~~~~~~~~~~~~~~--~~~~~t~~~~v~~~~~v~~  115 (216)
                      .+++++|.|+.+||   ....+.+.+++.++.  ++.|. + ++.....+.+.+.+..-  ..+....+..+++.|++..
T Consensus        29 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  108 (152)
T 2lja_A           29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLING  108 (152)
T ss_dssp             TTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCS
T ss_pred             CCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcCC
Confidence            46788899998887   445677888888773  35443 1 11112333333332211  1111223457889999986


Q ss_pred             -CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         116 -DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       116 -p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                       |+++++.+...-...+.|.. +.+.|.++|...
T Consensus       109 ~P~~~lid~~G~i~~~~~g~~-~~~~l~~~l~~~  141 (152)
T 2lja_A          109 IPRFILLDRDGKIISANMTRP-SDPKTAEKFNEL  141 (152)
T ss_dssp             SCCEEEECTTSCEEESSCCCT-TCHHHHHHHHHH
T ss_pred             CCEEEEECCCCeEEEccCCCC-CHHHHHHHHHHH
Confidence             99999985333233456776 778888888754

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=96.02  E-value=0.011  Score=43.04  Aligned_cols=83  Identities=12%  Similarity=0.022  Sum_probs=51.5

Q ss_pred             CCCeEEEEEecCCChhHHHHHHHHHhhCC-C-----ceEEecchhhHHHHhhhhccccceeeeccc--HHHHHhcCCCC-
Q psy7942          45 DSKVVVAGLFKDASSELAKTFNEIASKVD-D-----LVFDASSELAKTFNEIASKVDDLVFVTSTN--ADILAEYSVDD-  115 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~~~~~~f~~~A~~~~-~-----~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~--~~v~~~~~v~~-  115 (216)
                      +...++|.|+++||......=.+++..+. .     +.+.              ++|     .+.+  ++++.++++.+ 
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~--------------~vd-----v~~~~~~~la~~~~V~g~   77 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQ--------------RLQ-----MRDPLPPGLELARPVTFT   77 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEE--------------EEE-----TTSCCCTTCBCSSCCCSS
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEE--------------EEE-----CCCCCchhHHHHCCCCCC
Confidence            45678999999999543322123333331 1     2333              222     3332  46788889876 


Q ss_pred             CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         116 DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       116 p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ||+++|+++. ......|-. ..+.+..|+...
T Consensus        78 PT~i~f~~G~-ev~Ri~G~~-~~~~f~~~L~~~  108 (116)
T 3dml_A           78 PTFVLMAGDV-ESGRLEGYP-GEDFFWPMLARL  108 (116)
T ss_dssp             SEEEEEETTE-EEEEEECCC-CHHHHHHHHHHH
T ss_pred             CEEEEEECCE-EEeeecCCC-CHHHHHHHHHHH
Confidence            9999999543 345678888 889999998753

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=95.92  E-value=0.025  Score=41.67  Aligned_cols=101  Identities=12%  Similarity=0.108  Sum_probs=63.9

Q ss_pred             CeEEEEEecCCCh---hHHHHHHHHHhhCCCceEE-e-c--chhhHHHHhhhhccccc-eeee---cccHHHHHhcCCCC
Q psy7942          47 KVVVAGLFKDASS---ELAKTFNEIASKVDDLVFD-A-S--SELAKTFNEIASKVDDL-VFVT---STNADILAEYSVDD  115 (216)
Q Consensus        47 ~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~-~-~--~~~~~~~~~~~~~~~~~-~~~~---t~~~~v~~~~~v~~  115 (216)
                      ++++|.|+.+||.   ...+.+.+++.++ ++.|. + +  ....+.+.+.+.+.+-. -.+.   ..+..+++.|++..
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~-~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~  109 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHRVAEET-GVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKVLG  109 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHHHHHHH-CCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSBCS
T ss_pred             CeEEEEEEcccChhHHHHHHHHHHHHHHc-CCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCCCc
Confidence            7888889999985   4455677777766 44432 1 1  13344444444444321 1111   14567889999986


Q ss_pred             -CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcC
Q psy7942         116 -DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQS  149 (216)
Q Consensus       116 -p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~  149 (216)
                       |+++++.+...-...+.|.. +.+.|.++|.+..
T Consensus       110 ~P~~~lid~~G~i~~~~~g~~-~~~~l~~~l~~~~  143 (154)
T 3ia1_A          110 QPWTFVVDREGKVVALFAGRA-GREALLDALLLAG  143 (154)
T ss_dssp             SCEEEEECTTSEEEEEEESBC-CHHHHHHHHHHTT
T ss_pred             ccEEEEECCCCCEEEEEcCCC-CHHHHHHHHHhcc
Confidence             99888864222234567888 8999999998764

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=95.91  E-value=0.039  Score=40.51  Aligned_cols=103  Identities=12%  Similarity=0.106  Sum_probs=61.6

Q ss_pred             CCCeEEEEEecCCCh---hHHHHHHHHHhhCC--CceEEe--cchhhHHHHhhhhcccc-ceeeecccHHHHHhcCCCC-
Q psy7942          45 DSKVVVAGLFKDASS---ELAKTFNEIASKVD--DLVFDA--SSELAKTFNEIASKVDD-LVFVTSTNADILAEYSVDD-  115 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~--~~~F~~--~~~~~~~~~~~~~~~~~-~~~~~t~~~~v~~~~~v~~-  115 (216)
                      .+++++|.|+..||.   ...+.+.+++.++.  ++.|..  +......+...+.+..- .-.+...+..+++.|++.. 
T Consensus        25 ~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  104 (151)
T 2f9s_A           25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL  104 (151)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCCCC
Confidence            467889999999984   44556777776662  354431  11122223333322221 1111223457899999986 


Q ss_pred             CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         116 DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       116 p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      |+++++.+.......+.|.. +.+.|.++|...
T Consensus       105 P~~~lid~~G~i~~~~~G~~-~~~~l~~~l~~l  136 (151)
T 2f9s_A          105 PTTFLINPEGKVVKVVTGTM-TESMIHDYMNLI  136 (151)
T ss_dssp             CEEEEECTTSEEEEEEESCC-CHHHHHHHHHHH
T ss_pred             CeEEEECCCCcEEEEEeCCC-CHHHHHHHHHHH
Confidence            99999854222233467888 889999998864

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=95.90  E-value=0.041  Score=40.82  Aligned_cols=104  Identities=12%  Similarity=0.116  Sum_probs=64.0

Q ss_pred             CCCeEEEEEecCCCh---hHHHHHHHHHhhC--CCceE-Eec------chhhHHHHhhhhcccc--ceeeecccHHHHHh
Q psy7942          45 DSKVVVAGLFKDASS---ELAKTFNEIASKV--DDLVF-DAS------SELAKTFNEIASKVDD--LVFVTSTNADILAE  110 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~--~~~~F-~~~------~~~~~~~~~~~~~~~~--~~~~~t~~~~v~~~  110 (216)
                      .+++++|.|+.+||.   ...+.+.+++.++  .++.| +++      ....+.+.+.....+-  .-.....+.++++.
T Consensus        37 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  116 (164)
T 2h30_A           37 KDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQN  116 (164)
T ss_dssp             TTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHHH
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceEEEcCchHHHHH
Confidence            467899999999985   4456777777765  34433 221      1122333333332210  11113345678999


Q ss_pred             cCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcC
Q psy7942         111 YSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQS  149 (216)
Q Consensus       111 ~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~  149 (216)
                      |++.. |+++++.+...-...+.|.. +.+.|.++|....
T Consensus       117 ~~v~~~P~~~lid~~G~i~~~~~g~~-~~~~l~~~i~~~~  155 (164)
T 2h30_A          117 LNISVYPSWALIGKDGDVQRIVKGSI-NEAQALALIRNPN  155 (164)
T ss_dssp             TTCCSSSEEEEECTTSCEEEEEESCC-CHHHHHHHHHCTT
T ss_pred             cCCCccceEEEECCCCcEEEEEcCCC-CHHHHHHHHHHHH
Confidence            99986 99999954223234467888 8999999998753

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=95.88  E-value=0.049  Score=40.40  Aligned_cols=103  Identities=9%  Similarity=0.135  Sum_probs=59.9

Q ss_pred             CCCeEEEEEecCCCh---hHHHHHHHHHhhCC--CceEE-e-cchhhHHHHhhhhccccceeeecccHHHHHhc------
Q psy7942          45 DSKVVVAGLFKDASS---ELAKTFNEIASKVD--DLVFD-A-SSELAKTFNEIASKVDDLVFVTSTNADILAEY------  111 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~--~~~F~-~-~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~------  111 (216)
                      .+++++|.|+.+||.   ...+.+.+++.++.  .+.|. + ++...+.+.+.+.+.+-..-+...+.++.+.|      
T Consensus        33 ~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (165)
T 3or5_A           33 KGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFNGYIDG  112 (165)
T ss_dssp             TTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHHTTSTT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHhhhhcc
Confidence            467899999999984   44567777777763  35443 2 12222333333333221100122334566666      


Q ss_pred             CCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         112 SVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       112 ~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ++.. |+++++.+...-...+.|.. +.+.|.++|...
T Consensus       113 ~i~~~P~~~lid~~G~i~~~~~g~~-~~~~l~~~l~~~  149 (165)
T 3or5_A          113 GITGIPTSFVIDASGNVSGVIVGPR-SKADFDRIVKMA  149 (165)
T ss_dssp             CSCSSSEEEEECTTSBEEEEECSCC-CHHHHHHHHHHH
T ss_pred             CCCCCCeEEEECCCCcEEEEEcCCC-CHHHHHHHHHHH
Confidence            6765 99998864222234567888 899999998764

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=95.83  E-value=0.036  Score=41.54  Aligned_cols=84  Identities=17%  Similarity=0.108  Sum_probs=51.4

Q ss_pred             hCCCeEEEEEe-cCCChhHH---HHH---HHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecc-----------c
Q psy7942          44 ADSKVVVAGLF-KDASSELA---KTF---NEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTST-----------N  104 (216)
Q Consensus        44 ~~~~v~~V~f~-~~~~~~~~---~~f---~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~-----------~  104 (216)
                      ..+++++|.|+ .+||....   +.+   .+++..+ .++.+.              .+|     ...           +
T Consensus        45 ~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v--------------~vd-----~~~~~~~~~~~~~~~  105 (154)
T 2ju5_A           45 QDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMV--------------EVD-----FPQKNHQPEEQRQKN  105 (154)
T ss_dssp             HHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEE--------------EEE-----CCSSCCCCHHHHHHH
T ss_pred             hCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEE--------------Eec-----CccccCCChhhHhhH
Confidence            45788999998 89985443   344   3444433 344444              222     222           2


Q ss_pred             HHHHHhcCCCC-CeEEEEecCCCCcccccCCC-CCHHHHHHHHhh
Q psy7942         105 ADILAEYSVDD-DTVAIFKKFDEGRVNYEGPA-SDEAALRKFLST  147 (216)
Q Consensus       105 ~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~-~~~~~l~~fi~~  147 (216)
                      .++++.|++.+ |+++++.+.......+ |.. .+.+.+.++|..
T Consensus       106 ~~l~~~~~v~~~Pt~~~~d~~G~~~~~~-G~~~~~~~~l~~~l~~  149 (154)
T 2ju5_A          106 QELKAQYKVTGFPELVFIDAEGKQLARM-GFEPGGGAAYVSKVKS  149 (154)
T ss_dssp             HHHHHHTTCCSSSEEEEECTTCCEEEEE-CCCTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCEEEEEcCCCCEEEEe-cCCCCCHHHHHHHHHH
Confidence            47889999986 9999995422223334 643 167888888865

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=95.66  E-value=0.023  Score=39.03  Aligned_cols=60  Identities=10%  Similarity=0.068  Sum_probs=49.1

Q ss_pred             CCceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         150 LPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       150 ~P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      -+.+..++.+++......+ ++.++.|...+.+........+.++++++++++.|+.+|..
T Consensus         3 ~~~v~~l~~~~~~~~~~~~-~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~   62 (109)
T 3tco_A            3 EDVTLVLTEENFDEVIRNN-KLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVD   62 (109)
T ss_dssp             CCCCEECCTTTHHHHHHHS-SEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETT
T ss_pred             CCeEEEecHHHHHHHHhcC-CeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccc
Confidence            3567889999998887765 45566688888888899999999999999999888887754

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=95.60  E-value=0.071  Score=40.98  Aligned_cols=89  Identities=4%  Similarity=-0.134  Sum_probs=55.5

Q ss_pred             HHHHHhHh-CCCeEEEEEecCCChh---HHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcC
Q psy7942          37 DEIKAFIA-DSKVVVAGLFKDASSE---LAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYS  112 (216)
Q Consensus        37 ~~~~~~~~-~~~v~~V~f~~~~~~~---~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~  112 (216)
                      +..+.+.. .+++++|.|+++||.+   ..+.+.+++..++++.|.              .++     ...+++++.+|.
T Consensus        44 ~~~~~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~~v~~~--------------~v~-----~d~~~~~~~~~~  104 (167)
T 1z6n_A           44 ALTERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPNIELA--------------IIS-----KGRAEDDLRQRL  104 (167)
T ss_dssp             HHHHHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEE--------------EEC-----HHHHHHHTTTTT
T ss_pred             HHHHHHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCCCcEEE--------------EEE-----CCCCHHHHHHHH
Confidence            33344432 4678899999999854   466888888888777776              222     334566777776


Q ss_pred             ---CCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942         113 ---VDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       113 ---v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                         +.. |+++++++.......+ |.. . ..+...+..
T Consensus       105 ~~~v~~iPt~i~~~~~G~~~~~~-g~~-p-~~~~~~i~~  140 (167)
T 1z6n_A          105 ALERIAIPLVLVLDEEFNLLGRF-VER-P-QAVLDGGPQ  140 (167)
T ss_dssp             TCSSCCSSEEEEECTTCCEEEEE-ESS-C-HHHHHHCHH
T ss_pred             HcCCCCcCeEEEECCCCCEEEEE-cCC-C-HHHHHhHHH
Confidence               665 9999999632322233 444 2 445555553

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=95.49  E-value=0.081  Score=39.26  Aligned_cols=105  Identities=16%  Similarity=0.235  Sum_probs=59.5

Q ss_pred             CCCeEEEEEecCCCh---hHHHHHHHHHhhCC--CceEEe-cchhhHHHHhhhhcccc-ceeeecccHHHHHhcCCCC-C
Q psy7942          45 DSKVVVAGLFKDASS---ELAKTFNEIASKVD--DLVFDA-SSELAKTFNEIASKVDD-LVFVTSTNADILAEYSVDD-D  116 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~--~~~F~~-~~~~~~~~~~~~~~~~~-~~~~~t~~~~v~~~~~v~~-p  116 (216)
                      .+++++|.|+..||.   ...+.+.+++.++.  ++.|.. +-.  +.+.+...+..- .-.+...+.++.+.|++.. |
T Consensus        40 ~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P  117 (158)
T 3hdc_A           40 RGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVE--KRFPEKYRRAPVSFNFLSDATGQVQQRYGANRLP  117 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECS--SSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSSS
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCC--HHHHHHHHHcCCCceEEECchHHHHHHhCCCCcc
Confidence            467899999999984   44567778888873  555431 000  001111111110 1111223567899999986 9


Q ss_pred             eEEEEecCCCCcccccCCC-CCHHHHHHHHhhcCCC
Q psy7942         117 TVAIFKKFDEGRVNYEGPA-SDEAALRKFLSTQSLP  151 (216)
Q Consensus       117 ~i~~~~~~de~~~~y~G~~-~~~~~l~~fi~~~~~P  151 (216)
                      +++++.+...-...+.|.. .+..++.+.+..+..|
T Consensus       118 ~~~lid~~G~i~~~~~G~~~~~~~~~~~~~~~~~~~  153 (158)
T 3hdc_A          118 DTFIVDRKGIIRQRVTGGIEWDAPKVVSYLKSLEGH  153 (158)
T ss_dssp             EEEEECTTSBEEEEEESCCCTTSHHHHHHHHTTC--
T ss_pred             eEEEEcCCCCEEEEEeCCCccchHHHHHHHHhhccc
Confidence            9888865222234456643 1677888888887765

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=95.45  E-value=0.042  Score=37.60  Aligned_cols=58  Identities=12%  Similarity=0.157  Sum_probs=46.2

Q ss_pred             eeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         153 VVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       153 v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      +.+++.+++......+ ++.++.|...+.+........+.++++++.+++.++.+|...
T Consensus         2 v~~l~~~~~~~~~~~~-~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~   59 (105)
T 1nsw_A            2 TMTLTDANFQQAIQGD-GPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDE   59 (105)
T ss_dssp             CEEECTTTHHHHHSSS-SCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTT
T ss_pred             ceeccHHhHHHHHhCC-CcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcC
Confidence            5678888888777665 455667888888888889999999999999888888877543

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=95.39  E-value=0.21  Score=36.61  Aligned_cols=103  Identities=13%  Similarity=0.170  Sum_probs=63.7

Q ss_pred             CCCeEEEEEecCCCh---h-HHHHHHHHHhhCC--CceE-Eec-------chhhHHHHhhhhcccc-ceeeecccHH---
Q psy7942          45 DSKVVVAGLFKDASS---E-LAKTFNEIASKVD--DLVF-DAS-------SELAKTFNEIASKVDD-LVFVTSTNAD---  106 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~-~~~~f~~~A~~~~--~~~F-~~~-------~~~~~~~~~~~~~~~~-~~~~~t~~~~---  106 (216)
                      .+++++|.|+..||.   . ..+.+.+++.++.  .+.| +++       ....+.+...+.+..- .-.+...+..   
T Consensus        29 ~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  108 (160)
T 3lor_A           29 RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMPREGQR  108 (160)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCTTCS
T ss_pred             CCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCccccch
Confidence            468999999999985   3 3567788888872  3544 322       1233444444444321 1111223334   


Q ss_pred             ---HHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         107 ---ILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       107 ---v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                         +++.|++.. |+++++.+...-...+.|.. +.+.|.++|...
T Consensus       109 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~-~~~~l~~~i~~l  153 (160)
T 3lor_A          109 IPSTMKKYRLEGTPSIILADRKGRIRQVQFGQV-DDFVLGLLLGSL  153 (160)
T ss_dssp             SCHHHHHTTCCSSSEEEEECTTSBEEEEEESCC-CHHHHHHHHHHH
T ss_pred             hhhHHHhcccCccceEEEECCCCcEEEEecCcC-CHHHHHHHHHHH
Confidence               889999986 99999975322234456888 888899888753

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=95.32  E-value=0.035  Score=38.00  Aligned_cols=58  Identities=14%  Similarity=0.165  Sum_probs=46.4

Q ss_pred             eeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         153 VVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       153 v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      +.+++.+++......+ ++.++.|...+.+........+.++++++.+++.|+.+|...
T Consensus         3 v~~l~~~~~~~~~~~~-~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~   60 (109)
T 2yzu_A            3 PIEVTDQNFDETLGQH-PLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDE   60 (109)
T ss_dssp             CEECCTTTHHHHHHHC-SEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTT
T ss_pred             ceEccHhHHHHHhcCC-CeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCC
Confidence            5678888888777665 355666888888888889999999999999889888887543

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=95.31  E-value=0.076  Score=36.75  Aligned_cols=60  Identities=12%  Similarity=0.162  Sum_probs=47.1

Q ss_pred             CceeeeCcchHHHhh-ccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         151 PLVVEFNHETAQKIF-GGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       151 P~v~~~~~~~~~~~~-~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      ..+.+++.+++.... ..+ ++.++.|...+.+........+.++++++.+++.|+.+|...
T Consensus         7 ~~v~~l~~~~~~~~~~~~~-~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~   67 (115)
T 1thx_A            7 KGVITITDAEFESEVLKAE-QPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDP   67 (115)
T ss_dssp             CSEEECCGGGHHHHTTTCS-SCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTT
T ss_pred             CceEEeeccchhhHhhcCC-ceEEEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCC
Confidence            357889998887654 334 455666888888888999999999999999889998887653

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=95.13  E-value=0.058  Score=36.93  Aligned_cols=42  Identities=17%  Similarity=0.177  Sum_probs=33.0

Q ss_pred             ecccHHHHHhcCCCCCeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         101 TSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       101 ~t~~~~v~~~~~v~~p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ...+++++++|++..|+|++ .+  +.. .. |.+ +.+.|.+||...
T Consensus        34 id~~~~l~~~~g~~vPtl~~-~~--G~~-v~-g~~-~~~~L~~~l~~~   75 (87)
T 1ttz_A           34 IDDDAALESAYGLRVPVLRD-PM--GRE-LD-WPF-DAPRLRAWLDAA   75 (87)
T ss_dssp             CTTCHHHHHHHTTTCSEEEC-TT--CCE-EE-SCC-CHHHHHHHHHTC
T ss_pred             CCCCHHHHHHhCCCcCeEEE-EC--CEE-Ee-CCC-CHHHHHHHHHHH
Confidence            66788999999998899988 53  323 33 888 899999999764

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=95.13  E-value=0.12  Score=37.67  Aligned_cols=105  Identities=11%  Similarity=0.102  Sum_probs=60.9

Q ss_pred             CCCeEEEEEecCCCh---hHHHHHHHHHhhCC--CceEE-ec-chhhHHHHhhhhcccc-ceeeecccHHHHHhcCCCC-
Q psy7942          45 DSKVVVAGLFKDASS---ELAKTFNEIASKVD--DLVFD-AS-SELAKTFNEIASKVDD-LVFVTSTNADILAEYSVDD-  115 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~--~~~F~-~~-~~~~~~~~~~~~~~~~-~~~~~t~~~~v~~~~~v~~-  115 (216)
                      .+++++|.|+..||.   ...+.+.+++.++.  .+.|. ++ ......+...+.+..- .-.+...+..+++.|++.. 
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  106 (152)
T 3gl3_A           27 TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVKGM  106 (152)
T ss_dssp             TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCCSS
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCCCC
Confidence            467899999999984   44556777777762  24432 11 1122333333333321 1111333447889999986 


Q ss_pred             CeEEEEecCCCCcccccCCC-CCHHHHHHHHhhcC
Q psy7942         116 DTVAIFKKFDEGRVNYEGPA-SDEAALRKFLSTQS  149 (216)
Q Consensus       116 p~i~~~~~~de~~~~y~G~~-~~~~~l~~fi~~~~  149 (216)
                      |+++++.+...-...+.|.. .+.+.|.++|....
T Consensus       107 P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~  141 (152)
T 3gl3_A          107 PTSFLIDRNGKVLLQHVGFRPADKEALEQQILAAL  141 (152)
T ss_dssp             SEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHH
Confidence            99988864222223355632 16789999998764

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=95.11  E-value=0.059  Score=42.13  Aligned_cols=71  Identities=10%  Similarity=-0.019  Sum_probs=51.7

Q ss_pred             HHHHHhhcCCCceeeeCcchHHHhhccCCcceEEE-EEe-------CCccchhhhhHHHHHHHHhcc-----CceEEEEc
Q psy7942         141 LRKFLSTQSLPLVVEFNHETAQKIFGGEIKSHLLV-FFS-------KAAGHYESHFEPVQTVAKDFR-----EKEEQDED  207 (216)
Q Consensus       141 l~~fi~~~~~P~v~~~~~~~~~~~~~~~~~~~lll-f~~-------~~~~~~~~~~~~l~~vA~~~r-----~~~~f~~~  207 (216)
                      +.+++....-..+.++|.+++..+.......++++ |..       .++..+..+...+.++|++|.     +++.|..+
T Consensus         8 ~~~l~~l~~~~~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kv   87 (178)
T 3ga4_A            8 IDDILQLKDDTGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTV   87 (178)
T ss_dssp             CHHHHTTCCTTSEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEE
T ss_pred             HHHHHHhhccCCCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEE
Confidence            34455555566799999999998765432333444 555       256677889999999999998     89999888


Q ss_pred             CCCC
Q psy7942         208 DDQP  211 (216)
Q Consensus       208 d~~~  211 (216)
                      |...
T Consensus        88 D~d~   91 (178)
T 3ga4_A           88 DVNE   91 (178)
T ss_dssp             ETTT
T ss_pred             ECcc
Confidence            8754

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=95.05  E-value=0.046  Score=37.74  Aligned_cols=59  Identities=12%  Similarity=0.115  Sum_probs=47.3

Q ss_pred             ceeeeCcchHHHhh-ccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         152 LVVEFNHETAQKIF-GGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       152 ~v~~~~~~~~~~~~-~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      .+.+++.+++.... ..+ ++.++.|...+.+....+...+.++++++.+++.|+.+|...
T Consensus         5 ~v~~l~~~~~~~~~~~~~-~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~   64 (111)
T 3gnj_A            5 SLEKLDTNTFEQLIYDEG-KACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEE   64 (111)
T ss_dssp             CSEECCHHHHHHHHTTSC-CCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTT
T ss_pred             cceecCHHHHHHHHHhcC-CEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCc
Confidence            46678888888877 444 455667888888888999999999999999989888887643

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=95.02  E-value=0.14  Score=37.68  Aligned_cols=103  Identities=12%  Similarity=0.115  Sum_probs=63.0

Q ss_pred             CCCeEEEEEecCCCh---hH-HHHHHHHHhhCC--CceE-Eec-------chhhHHHHhhhhcccc-ceeeecccH----
Q psy7942          45 DSKVVVAGLFKDASS---EL-AKTFNEIASKVD--DLVF-DAS-------SELAKTFNEIASKVDD-LVFVTSTNA----  105 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~-~~~f~~~A~~~~--~~~F-~~~-------~~~~~~~~~~~~~~~~-~~~~~t~~~----  105 (216)
                      ..++++|.|+..||.   .. .+.+.+++.++.  .+.| +++       ......+...+.+..- .-.+...+.    
T Consensus        27 ~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  106 (158)
T 3eyt_A           27 RGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQPGDGAM  106 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECCCSSSS
T ss_pred             CCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCccchhh
Confidence            468999999999984   33 667788888873  4544 332       2233444444444321 111122222    


Q ss_pred             -HHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         106 -DILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       106 -~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                       .+++.|++.. |+++++.+...-...+.|.. +.+.|.++|...
T Consensus       107 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~g~~-~~~~l~~~i~~l  150 (158)
T 3eyt_A          107 PRTMAAYQMRGTPSLLLIDKAGDLRAHHFGDV-SELLLGAEIATL  150 (158)
T ss_dssp             CHHHHHTTCCSSSEEEEECTTSEEEEEEESCC-CHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCEEEEECCCCCEEEEEeCCC-CHHHHHHHHHHH
Confidence             5889999986 99998865222234567888 888888888653

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=94.91  E-value=0.28  Score=37.25  Aligned_cols=101  Identities=10%  Similarity=0.137  Sum_probs=62.5

Q ss_pred             CCCeEEEEEecCCChhH---HHHHHHHHhhCCCce-EEec-chhhHHHHhhhhccccc--eeeecccHHHHHhcCCCC-C
Q psy7942          45 DSKVVVAGLFKDASSEL---AKTFNEIASKVDDLV-FDAS-SELAKTFNEIASKVDDL--VFVTSTNADILAEYSVDD-D  116 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~~~---~~~f~~~A~~~~~~~-F~~~-~~~~~~~~~~~~~~~~~--~~~~t~~~~v~~~~~v~~-p  116 (216)
                      .+++++|.|+..||...   .+.+.+++.+  .+. .+++ +...+.+.+.+.+.+-.  ..+...+..+++.|++.. |
T Consensus        57 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~--~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P  134 (176)
T 3kh7_A           57 KGKPALVNVWGTWCPSCRVEHPELTRLAEQ--GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYGAP  134 (176)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHT--TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCSSC
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHC--CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCCCCC
Confidence            36788999999998544   4455665554  333 2333 34455555555554321  122445667899999986 9


Q ss_pred             eEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         117 TVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       117 ~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      +++++-+...-...+.|.. +.+.+.++|...
T Consensus       135 ~~~lid~~G~i~~~~~g~~-~~~~l~~~l~~~  165 (176)
T 3kh7_A          135 ETYLIDKQGIIRHKIVGVV-DQKVWREQLAPL  165 (176)
T ss_dssp             EEEEECTTCBEEEEEESCC-CHHHHHHHTHHH
T ss_pred             eEEEECCCCeEEEEEcCCC-CHHHHHHHHHHH
Confidence            8888765222233466888 888888887653

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=94.90  E-value=0.1  Score=35.74  Aligned_cols=59  Identities=8%  Similarity=0.162  Sum_probs=45.5

Q ss_pred             ceeeeCcchHHHhh-ccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         152 LVVEFNHETAQKIF-GGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       152 ~v~~~~~~~~~~~~-~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      .+.+++.+++.... ..+ ++.++.|...+.+........+.++++++.+++.|+.+|...
T Consensus         3 ~v~~l~~~~f~~~~~~~~-~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~   62 (108)
T 2trx_A            3 KIIHLTDDSFDTDVLKAD-GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ   62 (108)
T ss_dssp             TEEECCTTTHHHHTTTCS-SEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTT
T ss_pred             cceecchhhHHHHHHhcC-CeEEEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCC
Confidence            46788888887443 444 455666888888888889999999999999889888877543

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=94.89  E-value=0.085  Score=35.97  Aligned_cols=59  Identities=10%  Similarity=0.092  Sum_probs=45.7

Q ss_pred             ceeeeCcchHHHhh-ccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         152 LVVEFNHETAQKIF-GGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       152 ~v~~~~~~~~~~~~-~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      .+.+++.+++.... ..+ ++.++.|...+.+........+.++++++.+++.|+.+|...
T Consensus         3 ~v~~l~~~~~~~~~~~~~-~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~   62 (107)
T 2i4a_A            3 HTLAVSDSSFDQDVLKAS-GLVLVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDD   62 (107)
T ss_dssp             CEEECCTTTHHHHTTTCS-SEEEEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTT
T ss_pred             ceeecchhhhhHHHHhCC-CEEEEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCC
Confidence            46788888887554 333 455666888888888889999999999999889988887653

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=94.88  E-value=0.18  Score=45.40  Aligned_cols=115  Identities=12%  Similarity=0.136  Sum_probs=77.6

Q ss_pred             ccCCCCCChHHHHHHHH---hhhCCCceeecCHHHHHHhHh-CCCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEe
Q psy7942           7 GERRGGRTAEDIVNWLL---KKTGPPAKEFTSVDEIKAFIA-DSKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDA   79 (216)
Q Consensus         7 ~~Y~G~Rta~~iv~~l~---~~~~~~v~~l~s~~~~~~~~~-~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~   79 (216)
                      +.|.|-..-.++-.++.   ...+.+. .+ +.+.++.+.+ +.++.++.|+.+||.   ...+.+.++|..++++.|. 
T Consensus        76 i~f~g~p~g~e~~s~~~~l~~~~~~~~-~~-~~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~~v~~~-  152 (521)
T 1hyu_A           76 PRFAGSPLGHEFTSLVLALLWTGGHPS-KE-AQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHT-  152 (521)
T ss_dssp             CEEESCCCGGGHHHHHHHHHHHTTCCC-CS-CHHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEE-
T ss_pred             EEEeccCcchhHHHHHHHHHhhcCCCC-CC-CHHHHHHHHhcCCCcceEEEECCCCcCcHHHHHHHHHHHhHcCceEEE-
Confidence            56666555555555554   4445543 33 3455555543 466777888899984   4456788888888778877 


Q ss_pred             cchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942          80 SSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                                   .+|     ....++++++|++.. |++++  +  + .....|.. ..+.|.+|+...
T Consensus       153 -------------~vd-----~~~~~~~~~~~~i~svPt~~i--~--g-~~~~~G~~-~~~~l~~~l~~~  198 (521)
T 1hyu_A          153 -------------AID-----GGTFQNEITERNVMGVPAVFV--N--G-KEFGQGRM-TLTEIVAKVDTG  198 (521)
T ss_dssp             -------------EEE-----TTTCHHHHHHTTCCSSSEEEE--T--T-EEEEESCC-CHHHHHHHHCCS
T ss_pred             -------------EEe-----chhhHHHHHHhCCCccCEEEE--C--C-EEEecCCC-CHHHHHHHHhhc
Confidence                         344     556789999999976 99977  2  2 33456887 899999998765

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=94.85  E-value=0.054  Score=36.58  Aligned_cols=57  Identities=7%  Similarity=0.163  Sum_probs=44.6

Q ss_pred             eeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         153 VVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       153 v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      |.+++.+++......+ ++.++.|...+.+........+.++++++.+ +.++.+|...
T Consensus         1 V~~l~~~~~~~~~~~~-~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~v~~~~   57 (104)
T 2e0q_A            1 VIHLDSKNFDSFLASH-EIAVVDFWAEWCAPCLILAPIIEELAEDYPQ-VGFGKLNSDE   57 (104)
T ss_dssp             CEECCTTTHHHHHHHS-SEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTT
T ss_pred             CeecCHHHHHHHHhcC-CcEEEEEECCCChhHHHHhHHHHHHHHHcCC-ceEEEEECCC
Confidence            4578888888777655 3456668877778888899999999999988 8888887543

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=94.81  E-value=0.08  Score=35.97  Aligned_cols=59  Identities=12%  Similarity=0.120  Sum_probs=44.6

Q ss_pred             eeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         153 VVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       153 v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      +..++.+++.......-++.++.|...+.+........+.++++++++++.++.+|...
T Consensus         2 v~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~   60 (105)
T 1fb6_A            2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDE   60 (105)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT
T ss_pred             ceechhhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcc
Confidence            45678888877543322455666888888888889999999999999888888877543

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=94.77  E-value=0.071  Score=36.32  Aligned_cols=58  Identities=16%  Similarity=0.199  Sum_probs=46.4

Q ss_pred             ceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         152 LVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       152 ~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      .+.+++.+++.... .+ ++.++.|...+.+........+.++++++++++.|+.+|...
T Consensus         4 ~v~~l~~~~~~~~~-~~-~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~   61 (106)
T 3die_A            4 AIVKVTDADFDSKV-ES-GVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDE   61 (106)
T ss_dssp             CCEECCTTTHHHHS-CS-SEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT
T ss_pred             ceEECCHHHHHHHh-cC-CcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCc
Confidence            46788998888777 33 355666888888888899999999999999988888877543

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=94.76  E-value=0.083  Score=37.69  Aligned_cols=59  Identities=12%  Similarity=0.176  Sum_probs=46.2

Q ss_pred             CceeeeCcchHHHhh-ccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         151 PLVVEFNHETAQKIF-GGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       151 P~v~~~~~~~~~~~~-~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      +.+.+++.+++.... ..+ ++.++.|...+++........+.++++++++++.|+.+|..
T Consensus        17 ~~v~~l~~~~f~~~~~~~~-~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~   76 (130)
T 2dml_A           17 DDVIELTPSNFNREVIQSD-GLWLVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNAD   76 (130)
T ss_dssp             SSSEECCTTTHHHHTTTCS-SCEEEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETT
T ss_pred             CCcEECCHHHHHHHHhcCC-CeEEEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCC
Confidence            357788888887743 444 45566788888888899999999999999988888877754

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=94.76  E-value=0.66  Score=41.72  Aligned_cols=93  Identities=8%  Similarity=0.042  Sum_probs=65.7

Q ss_pred             CCeEEEEecCCCCcccccCCCCCHHHHHHHHhh----cCCCceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHH
Q psy7942         115 DDTVAIFKKFDEGRVNYEGPASDEAALRKFLST----QSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEP  190 (216)
Q Consensus       115 ~p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~----~~~P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~  190 (216)
                      .|++.+.++.....+.|.|-. --.++..||..    ...|  ..++.+....+-....+..+.+|...+++.+......
T Consensus        62 ~p~~~~~~~~~~~~i~f~g~p-~g~e~~s~~~~l~~~~~~~--~~~~~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~~  138 (521)
T 1hyu_A           62 KPSFLITNPGSQQGPRFAGSP-LGHEFTSLVLALLWTGGHP--SKEAQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQA  138 (521)
T ss_dssp             SSEEEEECTTCCCSCEEESCC-CGGGHHHHHHHHHHHTTCC--CCSCHHHHHHHHHCCSCEEEEEEECTTCSSHHHHHHH
T ss_pred             CCEEEEecCCCcceEEEeccC-cchhHHHHHHHHHhhcCCC--CCCCHHHHHHHHhcCCCcceEEEECCCCcCcHHHHHH
Confidence            499999986555568899865 44445555543    3333  5677777777754333345667888888888999999


Q ss_pred             HHHHHHhccCceEEEEcCCCC
Q psy7942         191 VQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       191 l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      +.++|.++. ++.+..+|...
T Consensus       139 l~~~a~~~~-~v~~~~vd~~~  158 (521)
T 1hyu_A          139 LNLMAVLNP-RIKHTAIDGGT  158 (521)
T ss_dssp             HHHHHHHCT-TEEEEEEETTT
T ss_pred             HHHHHhHcC-ceEEEEEechh
Confidence            999999987 78887777543

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=94.71  E-value=0.11  Score=36.25  Aligned_cols=57  Identities=12%  Similarity=0.092  Sum_probs=45.0

Q ss_pred             eeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         153 VVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       153 v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      +.+++.+++.... .+ ++.++.|...+.+........+.++++++++++.|+.+|...
T Consensus         3 v~~l~~~~~~~~~-~~-~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~   59 (112)
T 2voc_A            3 IVKATDQSFSAET-SE-GVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDE   59 (112)
T ss_dssp             CEECCTTTHHHHH-SS-SEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTT
T ss_pred             eEEecHHHHHHHh-CC-CEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCC
Confidence            5678888887766 44 345666888888888899999999999999888888887543

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=94.66  E-value=0.14  Score=37.48  Aligned_cols=101  Identities=13%  Similarity=0.146  Sum_probs=57.9

Q ss_pred             CCCeEEEEEecCCChhH---HHHHHHHHhhCCCceEE-ec-chhhHHHHhhhhcccc-ce-eeecccHHHHHhcCCCC-C
Q psy7942          45 DSKVVVAGLFKDASSEL---AKTFNEIASKVDDLVFD-AS-SELAKTFNEIASKVDD-LV-FVTSTNADILAEYSVDD-D  116 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~~~---~~~f~~~A~~~~~~~F~-~~-~~~~~~~~~~~~~~~~-~~-~~~t~~~~v~~~~~v~~-p  116 (216)
                      .+++++|.|+.+||...   .+.+.+++.+ +++.|. ++ ......+.+.+.+.+- .. .....+..+++.|++.. |
T Consensus        41 ~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~-~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P  119 (156)
T 1kng_A           41 KGKVSLVNVWASWCVPCHDEAPLLTELGKD-KRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVP  119 (156)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTC-TTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSC
T ss_pred             CCCEEEEEEEcccCHhHHHHHHHHHHHHhc-CCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCccC
Confidence            36788889999998544   4455555544 445543 11 1222333333333211 00 11334567889999986 9


Q ss_pred             eEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942         117 TVAIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       117 ~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                      +++++-+...-...+.|.. +.+.|.++|..
T Consensus       120 ~~~~id~~G~i~~~~~g~~-~~~~l~~~l~~  149 (156)
T 1kng_A          120 ETFVVGREGTIVYKLVGPI-TPDNLRSVLLP  149 (156)
T ss_dssp             EEEEECTTSBEEEEEESCC-CHHHHHHTHHH
T ss_pred             eEEEEcCCCCEEEEEeCCC-CHHHHHHHHHH
Confidence            7777754222233467887 88888888765

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=94.56  E-value=0.075  Score=36.40  Aligned_cols=58  Identities=14%  Similarity=0.149  Sum_probs=44.2

Q ss_pred             eeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         153 VVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       153 v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      +.+++.+++.......-++.++.|...+.+........+.++++++.+++.++.+|..
T Consensus         3 v~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~   60 (107)
T 1dby_A            3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTD   60 (107)
T ss_dssp             CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETT
T ss_pred             cEeccHHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECC
Confidence            5678888887654332245566688888888888999999999999988888888754

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=94.38  E-value=0.11  Score=36.28  Aligned_cols=62  Identities=10%  Similarity=0.092  Sum_probs=46.7

Q ss_pred             CCCceeeeCcchHHHh-hccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         149 SLPLVVEFNHETAQKI-FGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       149 ~~P~v~~~~~~~~~~~-~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      ....+.+++.+++... ...+ ++.++.|...+++........+.++++++.+++.|+.+|...
T Consensus        10 ~~~~v~~l~~~~~~~~~~~~~-~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~   72 (121)
T 2i1u_A           10 EKSATIKVTDASFATDVLSSN-KPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDT   72 (121)
T ss_dssp             --CCSEECCTTTHHHHTTTCS-SCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT
T ss_pred             hcccceecCHHHHHHHHHhCC-CcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC
Confidence            3456788888888754 3444 455667888888888899999999999999889888887643

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=94.36  E-value=0.071  Score=44.92  Aligned_cols=85  Identities=13%  Similarity=0.019  Sum_probs=52.0

Q ss_pred             HHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeee-cccHHHHHhc
Q psy7942          36 VDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVT-STNADILAEY  111 (216)
Q Consensus        36 ~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~-t~~~~v~~~~  111 (216)
                      ...+.+.+++..+  |.|+.+||.   ...+.|.++|++++.+.+.              .+|     . ..++++++++
T Consensus       189 ~~~la~~l~~~~v--V~F~A~WC~~Ck~l~p~le~lA~~l~~Vd~d--------------~~d-----~~~~~~~la~~~  247 (291)
T 3kp9_A          189 AVGLAAHLRQIGG--TMYGAYWCPHCQDQKELFGAAFDQVPYVECS--------------PNG-----PGTPQAQECTEA  247 (291)
T ss_dssp             HHHHHHHHHHTTC--EEEECTTCHHHHHHHHHHGGGGGGSCEEESC--------------SSC-----SSSCCCHHHHTT
T ss_pred             HHHHHHHhCCCCE--EEEECCCCHHHHHHHHHHHHHHHHcCEEEEe--------------ecC-----chhhHHHHHHHc
Confidence            3455555655554  557888873   3445666655544211111              000     1 2267899999


Q ss_pred             CCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         112 SVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       112 ~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ++.. |++.+  +  +.  .|.|.. +.++|.+|+.-.
T Consensus       248 gI~~vPT~~i--~--G~--~~~G~~-~~~~L~~~l~~~  278 (291)
T 3kp9_A          248 GITSYPTWII--N--GR--TYTGVR-SLEALAVASGYP  278 (291)
T ss_dssp             TCCSTTEEEE--T--TE--EEESCC-CHHHHHHHTCCC
T ss_pred             CCcccCeEEE--C--CE--EecCCC-CHHHHHHHHCCC
Confidence            9986 99655  3  22  399998 999999998643

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=94.34  E-value=0.3  Score=36.95  Aligned_cols=102  Identities=6%  Similarity=0.006  Sum_probs=56.7

Q ss_pred             CCCeEEEEEecCCCh---hHHHHHHHHHhhC--CCc------eEE-ec-ch-hhHHHHhhhhcccc-ceeeecccHHHHH
Q psy7942          45 DSKVVVAGLFKDASS---ELAKTFNEIASKV--DDL------VFD-AS-SE-LAKTFNEIASKVDD-LVFVTSTNADILA  109 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~--~~~------~F~-~~-~~-~~~~~~~~~~~~~~-~~~~~t~~~~v~~  109 (216)
                      ..++++|.|+..||.   ...+.+.+++.++  ..+      .|. ++ +. ..+.+.+.+.+.+- ...+...+..+..
T Consensus        58 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  137 (183)
T 3lwa_A           58 ENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYDPPFMTAA  137 (183)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEECTTCGGGG
T ss_pred             CCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEECCcchHHH
Confidence            468899999999984   4456777777776  224      442 21 11 23334443333321 1111223334444


Q ss_pred             hc---CCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942         110 EY---SVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       110 ~~---~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                      .|   ++.. |+++++.+...-...|.|.. +.+.|.++|..
T Consensus       138 ~~~~~~v~~~P~~~lid~~G~i~~~~~g~~-~~~~l~~~l~~  178 (183)
T 3lwa_A          138 SLGGVPASVIPTTIVLDKQHRPAAVFLREV-TSKDVLDVALP  178 (183)
T ss_dssp             GTTTCCTTCCSEEEEECTTSCEEEEECSCC-CHHHHHHHHHH
T ss_pred             HhccCCCCCCCeEEEECCCCcEEEEEcCCC-CHHHHHHHHHH
Confidence            44   3554 98777764223234567888 88999998875

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=94.27  E-value=0.1  Score=38.13  Aligned_cols=60  Identities=15%  Similarity=0.181  Sum_probs=48.0

Q ss_pred             CceeeeCcchHH-HhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         151 PLVVEFNHETAQ-KIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       151 P~v~~~~~~~~~-~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      +.+.+++.+++. .+...+ ++.++.|+..+++.+..+...+.++++++.+++.|+.+|...
T Consensus         6 ~~v~~l~~~~f~~~~~~~~-~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~   66 (140)
T 3hz4_A            6 SSIIEFEDMTWSQQVEDSK-KPVVVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIAT   66 (140)
T ss_dssp             TTEEEECHHHHHHHTTTCS-SCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTT
T ss_pred             cceEEcchHhHHHHHHhCC-CcEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCc
Confidence            568889998888 454444 455667888888888999999999999999999998887643

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=94.22  E-value=0.18  Score=37.56  Aligned_cols=101  Identities=6%  Similarity=0.054  Sum_probs=57.3

Q ss_pred             hCCCeEEEEEecCCChhH---HHHHHHHHhhCCCceE-Eec-chhhHHHHhhhhcccc-c-eeeecccHHHHHhcCCCC-
Q psy7942          44 ADSKVVVAGLFKDASSEL---AKTFNEIASKVDDLVF-DAS-SELAKTFNEIASKVDD-L-VFVTSTNADILAEYSVDD-  115 (216)
Q Consensus        44 ~~~~v~~V~f~~~~~~~~---~~~f~~~A~~~~~~~F-~~~-~~~~~~~~~~~~~~~~-~-~~~~t~~~~v~~~~~v~~-  115 (216)
                      ..+++++|.|+.+||...   .+.+.+++.+  ++.| +++ ....+.+...+.+.+- . ......+..+++.|++.. 
T Consensus        49 ~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~--~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  126 (168)
T 2b1k_A           49 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA  126 (168)
T ss_dssp             CCSSCEEEEEECTTCHHHHHHHHHHHHHHHT--TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHTCCSS
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHC--CCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcCcccc
Confidence            357788999999998543   4566666654  3332 221 1222223333322211 0 111334567889999986 


Q ss_pred             CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942         116 DTVAIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       116 p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                      |+.+++.+...-...+.|.. +.+.|.++|..
T Consensus       127 P~~~lid~~G~i~~~~~g~~-~~~~l~~~l~~  157 (168)
T 2b1k_A          127 PETFLIDGNGIIRYRHAGDL-NPRVWEEEIKP  157 (168)
T ss_dssp             SEEEEECTTSBEEEEEESCC-CHHHHHHTTHH
T ss_pred             CEEEEECCCCeEEEEEeCCC-CHHHHHHHHHH
Confidence            97666654222233467887 88888888765

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=94.22  E-value=0.27  Score=35.81  Aligned_cols=104  Identities=11%  Similarity=0.115  Sum_probs=59.8

Q ss_pred             CCCeEEEEEecCCCh---hHHHHHHHHHhhCC--CceEE-e--cchhhHHHHhhhhcccc-ceeeecccHHHHHhcCCCC
Q psy7942          45 DSKVVVAGLFKDASS---ELAKTFNEIASKVD--DLVFD-A--SSELAKTFNEIASKVDD-LVFVTSTNADILAEYSVDD  115 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~--~~~F~-~--~~~~~~~~~~~~~~~~~-~~~~~t~~~~v~~~~~v~~  115 (216)
                      .+++++|.|+..||.   ...+.+.+++.++.  .+.|. +  ..+....+.+.+.+..- .-++...+..+++.|++..
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  106 (154)
T 3kcm_A           27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTG  106 (154)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHTCCS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhCCCC
Confidence            567899999999984   44567778887773  34432 1  11113333333333321 1111334456889999986


Q ss_pred             -CeEEEEecCCCCcccccCCC-CCHHHHHHHHhhc
Q psy7942         116 -DTVAIFKKFDEGRVNYEGPA-SDEAALRKFLSTQ  148 (216)
Q Consensus       116 -p~i~~~~~~de~~~~y~G~~-~~~~~l~~fi~~~  148 (216)
                       |+++++.+...-...+.|.. .+.+.+.++|...
T Consensus       107 ~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l  141 (154)
T 3kcm_A          107 VPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNE  141 (154)
T ss_dssp             BCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC
T ss_pred             CCeEEEECCCCcEEEEEcCCCccccHHHHHHHHHH
Confidence             98777754222223345643 1567899988764

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=94.09  E-value=0.082  Score=37.14  Aligned_cols=59  Identities=14%  Similarity=0.166  Sum_probs=46.3

Q ss_pred             CceeeeCcchHHHhh-ccCCcceEEEEEeCCccchhhhhHHHHHHHHhccC-----ceEEEEcCCC
Q psy7942         151 PLVVEFNHETAQKIF-GGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFRE-----KEEQDEDDDQ  210 (216)
Q Consensus       151 P~v~~~~~~~~~~~~-~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~-----~~~f~~~d~~  210 (216)
                      +.+..++.+++.... ..+ ++.++.|+..++.....+...+.++|+++++     ++.|+.+|..
T Consensus         7 ~~v~~l~~~~f~~~v~~~~-~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~   71 (121)
T 2djj_A            7 GPVTVVVAKNYNEIVLDDT-KDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDAT   71 (121)
T ss_dssp             CSSEECCTTTTTTSSSCTT-SCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETT
T ss_pred             CCeEEecccCHHHHhhcCC-CCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECc
Confidence            457788888887664 333 4556668888888889999999999999987     7888888754

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=94.08  E-value=0.44  Score=35.23  Aligned_cols=101  Identities=14%  Similarity=0.289  Sum_probs=61.8

Q ss_pred             CCCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEE-e-cc------------------hhhHHHHhhhhccc--ccee
Q psy7942          45 DSKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFD-A-SS------------------ELAKTFNEIASKVD--DLVF   99 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~-~-~~------------------~~~~~~~~~~~~~~--~~~~   99 (216)
                      ..++++|.|+..||.   ...+.+.+++.++.++.|. + +.                  +....+...+.+..  ..-.
T Consensus        36 ~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (165)
T 3ha9_A           36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIM  115 (165)
T ss_dssp             CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTSEE
T ss_pred             CCCEEEEEEECCCCcchhhhHHHHHHHHHHcCCcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCeeE
Confidence            468899999999884   4556777777777555442 1 11                  23333333333332  1211


Q ss_pred             eecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         100 VTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       100 ~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      +.. +.++.+.|++.. |+++++.+  ++.+.+.|...+.+.|.++|...
T Consensus       116 ~~d-~~~~~~~~~v~~~P~~~lid~--~G~i~~~g~~~~~~~l~~~l~~l  162 (165)
T 3ha9_A          116 VMD-DGSLVEKFNVRSIDYIVIMDK--SSNVLYAGTTPSLGELESVIKSV  162 (165)
T ss_dssp             EEC-CSHHHHHTTCCSSSEEEEEET--TCCEEEEEESCCHHHHHHHHHHC
T ss_pred             EeC-hHHHHHHhCCCCceEEEEEcC--CCcEEEeCCCCCHHHHHHHHHHH
Confidence            122 567899999986 99999975  23444455432678888888753

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=94.05  E-value=0.12  Score=36.52  Aligned_cols=62  Identities=10%  Similarity=-0.026  Sum_probs=47.4

Q ss_pred             CCCceeeeCcchHHHhh-ccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         149 SLPLVVEFNHETAQKIF-GGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       149 ~~P~v~~~~~~~~~~~~-~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      .-+.+..++.+++.... ..+ ++.++.|...+++.+......|.++++++.+++.|+.+|...
T Consensus        11 ~~~~~~~~~~~~f~~~v~~~~-k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~   73 (119)
T 1w4v_A           11 GSTTFNIQDGPDFQDRVVNSE-TPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDD   73 (119)
T ss_dssp             CCSEEECCSHHHHHHHTTTCS-SCEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTT
T ss_pred             CceEEEecChhhHHHHHHcCC-CcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCC
Confidence            34567788888887644 444 455666888888888889999999999999889888887643

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=94.01  E-value=0.13  Score=37.04  Aligned_cols=101  Identities=7%  Similarity=0.001  Sum_probs=55.2

Q ss_pred             CCCeEEEEEecCCC---hhHHHHHHHHHhhCC--CceEE-e-cchhhHHHHhhhhcccc--ceeeecccHH--HHHhcCC
Q psy7942          45 DSKVVVAGLFKDAS---SELAKTFNEIASKVD--DLVFD-A-SSELAKTFNEIASKVDD--LVFVTSTNAD--ILAEYSV  113 (216)
Q Consensus        45 ~~~v~~V~f~~~~~---~~~~~~f~~~A~~~~--~~~F~-~-~~~~~~~~~~~~~~~~~--~~~~~t~~~~--v~~~~~v  113 (216)
                      .+++++|.|+.+||   ....+.+.+++.++.  .+.|. + ++.....+.+.+.+.+-  ...+...+..  +++.|++
T Consensus        30 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i  109 (148)
T 3hcz_A           30 QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDI  109 (148)
T ss_dssp             CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcCc
Confidence            46788999998876   456777888887762  25443 1 12222333333333321  1111112222  8889999


Q ss_pred             CC-CeEEEEecCCCCcccccCCCCCHHHHHHHHh
Q psy7942         114 DD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLS  146 (216)
Q Consensus       114 ~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~  146 (216)
                      .. |+++++.+...-...+.|.. +.+.+.+.+.
T Consensus       110 ~~~P~~~lid~~G~i~~~~~g~~-~~~~~l~~l~  142 (148)
T 3hcz_A          110 YATPVLYVLDKNKVIIAKRIGYE-NLDDFLVQYE  142 (148)
T ss_dssp             CSSCEEEEECTTCBEEEESCCGG-GHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcEEEecCCHH-HHHHHHHHHH
Confidence            86 99999964222223345554 5555555543

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=93.94  E-value=0.14  Score=35.34  Aligned_cols=59  Identities=12%  Similarity=0.228  Sum_probs=44.9

Q ss_pred             ceeeeCcchHHH-hhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         152 LVVEFNHETAQK-IFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       152 ~v~~~~~~~~~~-~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      .+..++.+++.. +...+ ++.++.|...+.+........+.++++++.+++.++.+|...
T Consensus         6 ~v~~l~~~~~~~~~~~~~-~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~   65 (112)
T 1t00_A            6 TLKHVTDDSFEQDVLKND-KPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDE   65 (112)
T ss_dssp             CCEEECTTTHHHHTTTCS-SCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT
T ss_pred             eEEecchhhHHHHHhhCC-CeEEEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCC
Confidence            467888888765 33444 455666888888888889999999999998888888887543

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=93.92  E-value=0.17  Score=36.46  Aligned_cols=59  Identities=8%  Similarity=0.163  Sum_probs=45.1

Q ss_pred             ceeeeCcchHHHh-hccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         152 LVVEFNHETAQKI-FGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       152 ~v~~~~~~~~~~~-~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      -+.+++.+++... ...+ ++.++.|...+.+........+.++++++.+++.|+.+|...
T Consensus        23 ~v~~l~~~~f~~~~~~~~-k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~   82 (128)
T 2o8v_B           23 KIIHLTDDSFDTDVLKAD-GAILVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQ   82 (128)
T ss_dssp             CSEEECTTTHHHHTTTCS-SEEEEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTT
T ss_pred             ccEecChhhHHHHHHhcC-CEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCC
Confidence            3678888888754 3444 445666888888888899999999999999889888877543

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=93.91  E-value=0.11  Score=36.49  Aligned_cols=59  Identities=15%  Similarity=0.272  Sum_probs=46.1

Q ss_pred             ceeeeCcchHH-HhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         152 LVVEFNHETAQ-KIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       152 ~v~~~~~~~~~-~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      .+.+++.+++. .+...+ ++.++.|...+++.+......+.++++++.+++.|+.+|...
T Consensus         4 ~v~~l~~~~f~~~~~~~~-~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~   63 (122)
T 3aps_A            4 ASIDLTPQTFNEKVLQGK-THWVVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQA   63 (122)
T ss_dssp             CSEECCHHHHHHHTTTCS-SCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTT
T ss_pred             chhcCCHHHHHHHHhcCC-CeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcC
Confidence            46788888884 455554 455666888888888899999999999999899998888643

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=93.90  E-value=0.1  Score=42.79  Aligned_cols=63  Identities=16%  Similarity=0.211  Sum_probs=50.3

Q ss_pred             CCCceeeeCcchHHHhhccC-CcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         149 SLPLVVEFNHETAQKIFGGE-IKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       149 ~~P~v~~~~~~~~~~~~~~~-~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      ..+.|.++|.+++..+.... -++.++.|+.++++.+......+.++++++.+++.|+.+|...
T Consensus         5 ~~~~v~~~~~~~f~~~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~   68 (287)
T 3qou_A            5 SVENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDA   68 (287)
T ss_dssp             -CTTEEECCTTTHHHHHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSSSEEEEEETTT
T ss_pred             CCCccEECCHHHHHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEEeCcc
Confidence            35679999999998877642 2344556888888889999999999999999999888887643

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=93.87  E-value=0.14  Score=34.69  Aligned_cols=58  Identities=14%  Similarity=0.094  Sum_probs=43.5

Q ss_pred             eeeeCc-chHHHhhcc-CCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         153 VVEFNH-ETAQKIFGG-EIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       153 v~~~~~-~~~~~~~~~-~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      +.+++. +++...... .-++.++.|...+.+........+.++++++++++.|+.+|..
T Consensus         2 v~~l~~~~~~~~~l~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~   61 (106)
T 1xwb_A            2 VYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVD   61 (106)
T ss_dssp             EEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETT
T ss_pred             ceecCCHHHHHHHHHhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEecc
Confidence            456776 677766652 2234566688888888888999999999999888988888754

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=93.86  E-value=0.14  Score=37.09  Aligned_cols=62  Identities=10%  Similarity=0.080  Sum_probs=44.6

Q ss_pred             CCceeeeCcchHHHhhcc-----------CCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         150 LPLVVEFNHETAQKIFGG-----------EIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       150 ~P~v~~~~~~~~~~~~~~-----------~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      -+.+..++.+++......           .-++.++.|+..+++.+......+.+++++|.+++.|+.+|...
T Consensus        21 ~~~v~~l~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~   93 (141)
T 3hxs_A           21 QSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDK   93 (141)
T ss_dssp             --CCEECCHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTT
T ss_pred             CCCcccccHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCC
Confidence            345666666666554443           11355666888888888999999999999999999888887643

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=93.71  E-value=0.33  Score=35.49  Aligned_cols=99  Identities=10%  Similarity=0.142  Sum_probs=55.3

Q ss_pred             CCCeEEEEEecCCCh---hHHHHHHHHHhhCC--CceEE-e-cchhhHHHHhhhhcccc-ceeeecc---cHHHHHhcCC
Q psy7942          45 DSKVVVAGLFKDASS---ELAKTFNEIASKVD--DLVFD-A-SSELAKTFNEIASKVDD-LVFVTST---NADILAEYSV  113 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~--~~~F~-~-~~~~~~~~~~~~~~~~~-~~~~~t~---~~~v~~~~~v  113 (216)
                      .+++++|.|+.+||.   ...+.+.+++.++.  .+.|. + ++...+.+.+.+.+..- ...+...   +..+++.|++
T Consensus        28 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v  107 (152)
T 2lrn_A           28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCI  107 (152)
T ss_dssp             TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCC
Confidence            467899999999984   44566777777762  35442 1 12223344443333221 1111222   4678899999


Q ss_pred             CC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942         114 DD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       114 ~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                      .. |+++++.+  ++.+.+.. . +.+.|.++|..
T Consensus       108 ~~~P~~~lid~--~G~i~~~~-~-~~~~l~~~l~~  138 (152)
T 2lrn_A          108 VGFPHIILVDP--EGKIVAKE-L-RGDDLYNTVEK  138 (152)
T ss_dssp             CSSCEEEEECT--TSEEEEEC-C-CTTHHHHHHHH
T ss_pred             CcCCeEEEECC--CCeEEEee-C-CHHHHHHHHHH
Confidence            86 99999854  23344332 2 33456666654

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.51  E-value=0.13  Score=36.58  Aligned_cols=60  Identities=17%  Similarity=0.216  Sum_probs=46.5

Q ss_pred             CceeeeCcchHHHhh-ccCCcceEEEEEeCCccchhhhhHHHHHHHHhcc----CceEEEEcCCCC
Q psy7942         151 PLVVEFNHETAQKIF-GGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFR----EKEEQDEDDDQP  211 (216)
Q Consensus       151 P~v~~~~~~~~~~~~-~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r----~~~~f~~~d~~~  211 (216)
                      ..+.+++.+++.... ..+ ++.++.|...++..+......+.++++++.    +++.|+.+|...
T Consensus         7 ~~v~~l~~~~~~~~~~~~~-~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~   71 (133)
T 1x5d_A            7 GDVIELTDDSFDKNVLDSE-DVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATV   71 (133)
T ss_dssp             CSCEECCTTHHHHHTTTSS-SEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTT
T ss_pred             CcCEEcCHhhHHHHHhcCC-CeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCC
Confidence            457788988888755 333 455666888888888889999999999998    789998887643

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=93.43  E-value=0.1  Score=39.45  Aligned_cols=78  Identities=8%  Similarity=-0.014  Sum_probs=43.3

Q ss_pred             HHHHHhHhCCCeEEEEEecCCChhH---HHHHHHH---HhhCC-CceEEecchhhHHHHhhhhccccceeeecccHHHHH
Q psy7942          37 DEIKAFIADSKVVVAGLFKDASSEL---AKTFNEI---ASKVD-DLVFDASSELAKTFNEIASKVDDLVFVTSTNADILA  109 (216)
Q Consensus        37 ~~~~~~~~~~~v~~V~f~~~~~~~~---~~~f~~~---A~~~~-~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~  109 (216)
                      +.++...+++++++|-|+++||...   .+.+.+.   ..... ++...              .+|      ....+++.
T Consensus        35 ~al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V--------------~vD------~e~~~~~~   94 (151)
T 3ph9_A           35 EGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIML--------------NLM------HETTDKNL   94 (151)
T ss_dssp             HHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEE--------------EES------SCCSCGGG
T ss_pred             HHHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEE--------------Eec------CCchhhHh
Confidence            3455566678999999999999543   3344332   11111 22222              111      11234567


Q ss_pred             hcCCCC-CeEEEEecCCCCcccccCC
Q psy7942         110 EYSVDD-DTVAIFKKFDEGRVNYEGP  134 (216)
Q Consensus       110 ~~~v~~-p~i~~~~~~de~~~~y~G~  134 (216)
                      .+++.+ |++++|.+..+......|.
T Consensus        95 ~~~v~~~PT~~f~~~~G~~v~~~~G~  120 (151)
T 3ph9_A           95 SPDGQYVPRIMFVDPSLTVRADIAGR  120 (151)
T ss_dssp             CTTCCCSSEEEEECTTSCBCTTCCCS
T ss_pred             hcCCCCCCEEEEECCCCCEEEEEeCC
Confidence            788876 9999998533323334454

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=93.42  E-value=0.12  Score=37.24  Aligned_cols=59  Identities=15%  Similarity=0.231  Sum_probs=46.9

Q ss_pred             ceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCc---eEEEEcCCCC
Q psy7942         152 LVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREK---EEQDEDDDQP  211 (216)
Q Consensus       152 ~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~---~~f~~~d~~~  211 (216)
                      .+..++.+++......+ +..++.|+..++..+..+...+.+++++++++   +.|+.+|...
T Consensus        18 ~v~~l~~~~~~~~~~~~-~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~   79 (140)
T 2dj1_A           18 GVWVLNDGNFDNFVADK-DTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATS   79 (140)
T ss_dssp             TEEECCTTTHHHHHTTC-SEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTT
T ss_pred             CCEEcChHhHHHHHhcC-CeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcc
Confidence            47788888888877655 44566688888888888999999999999876   8998888653

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=93.22  E-value=0.18  Score=36.96  Aligned_cols=60  Identities=15%  Similarity=0.132  Sum_probs=47.7

Q ss_pred             CceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         151 PLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       151 P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      ..+..++.+++......+ ++.++.|...+......+...+.++++++.+++.|+.+|...
T Consensus        38 ~~v~~l~~~~~~~~~~~~-k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~   97 (148)
T 3p2a_A           38 GEVINATAETLDKLLQDD-LPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEA   97 (148)
T ss_dssp             CCCEECCTTTHHHHTTCS-SCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT
T ss_pred             CCceecCHHHHHHHHhcC-CcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcC
Confidence            346788888888777554 455666888888888889999999999999999998887643

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=93.13  E-value=0.2  Score=36.23  Aligned_cols=59  Identities=12%  Similarity=0.112  Sum_probs=44.7

Q ss_pred             ceeeeCcchHHHhhcc-----------CCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         152 LVVEFNHETAQKIFGG-----------EIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       152 ~v~~~~~~~~~~~~~~-----------~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      .+.+++.+++......           +-++.++.|...+++.+......+.++++++++++.|+.+|..
T Consensus        10 ~v~~l~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~   79 (136)
T 2l5l_A           10 KVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTE   79 (136)
T ss_dssp             SEEEECHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETT
T ss_pred             ceEEecchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCC
Confidence            4677788777665442           1134566688888888889999999999999988988887754

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=93.01  E-value=0.33  Score=33.40  Aligned_cols=60  Identities=18%  Similarity=0.140  Sum_probs=46.2

Q ss_pred             CCceeeeCcchHHHhhcc-CCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         150 LPLVVEFNHETAQKIFGG-EIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       150 ~P~v~~~~~~~~~~~~~~-~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      ...+..++.+++...... .-++.++.|...+.+........+.++++++++ +.|+.+|..
T Consensus         4 ~~~v~~l~~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~-v~~~~vd~~   64 (111)
T 2pu9_C            4 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD-VIFLKLDCN   64 (111)
T ss_dssp             TTSEEEECTTTHHHHHTTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECS
T ss_pred             cCccEEechHHHHHHHHhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCC-eEEEEEecC
Confidence            345788999888877763 223556668888888888899999999999985 888888764

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=92.96  E-value=0.11  Score=37.22  Aligned_cols=61  Identities=16%  Similarity=0.126  Sum_probs=46.4

Q ss_pred             CCceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhcc--CceEEEEcCCC
Q psy7942         150 LPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFR--EKEEQDEDDDQ  210 (216)
Q Consensus       150 ~P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r--~~~~f~~~d~~  210 (216)
                      -+.+..++.+++.......-++.++.|...+++.+......|.+++++++  +++.|+.+|..
T Consensus         6 ~~~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~   68 (133)
T 2dj3_A            6 SGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDAT   68 (133)
T ss_dssp             SCSSEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTT
T ss_pred             CCceEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCC
Confidence            45678888888776554322345666888888888999999999999998  56899888864

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.94  E-value=0.21  Score=36.15  Aligned_cols=62  Identities=11%  Similarity=0.124  Sum_probs=48.1

Q ss_pred             CCceeeeCcchHHHhhccCCc-ceEEEEEeCCccchhhhhHHHHHHHHhccC-ceEEEEcCCCC
Q psy7942         150 LPLVVEFNHETAQKIFGGEIK-SHLLVFFSKAAGHYESHFEPVQTVAKDFRE-KEEQDEDDDQP  211 (216)
Q Consensus       150 ~P~v~~~~~~~~~~~~~~~~~-~~lllf~~~~~~~~~~~~~~l~~vA~~~r~-~~~f~~~d~~~  211 (216)
                      ...+.+++.+++......... +.++.|...+++.+......+.++|++|++ ++.|+.+|...
T Consensus         6 ~~~v~~l~~~~f~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~   69 (137)
T 2dj0_A            6 SGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGR   69 (137)
T ss_dssp             CSCCEECCTTHHHHHHHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTT
T ss_pred             CceEEEccHhhHHHHHhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCcc
Confidence            345778899888876665422 345568888888888999999999999997 79999988643

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=92.90  E-value=0.19  Score=34.71  Aligned_cols=59  Identities=14%  Similarity=0.188  Sum_probs=46.3

Q ss_pred             ceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccC---ceEEEEcCCCC
Q psy7942         152 LVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFRE---KEEQDEDDDQP  211 (216)
Q Consensus       152 ~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~---~~~f~~~d~~~  211 (216)
                      .+.+++.+++......+ ++.++.|...+++.+..+...+.++++++++   ++.|+.+|...
T Consensus         8 ~v~~l~~~~~~~~~~~~-~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~   69 (120)
T 1mek_A            8 HVLVLRKSNFAEALAAH-KYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE   69 (120)
T ss_dssp             TEEECCTTTHHHHHHHC-SEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTT
T ss_pred             CcEEechhhHHHHHccC-CeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCC
Confidence            46788988988877765 4556668888888888999999999999874   57888777654

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=92.86  E-value=0.84  Score=32.58  Aligned_cols=99  Identities=9%  Similarity=0.103  Sum_probs=59.6

Q ss_pred             CCCeEEEEEecCCC---hhHHHHHHHHHhhC-CC--ceEE-e-cchhhHHHHhhhhcccc-ceeeecc---cHHHHHhcC
Q psy7942          45 DSKVVVAGLFKDAS---SELAKTFNEIASKV-DD--LVFD-A-SSELAKTFNEIASKVDD-LVFVTST---NADILAEYS  112 (216)
Q Consensus        45 ~~~v~~V~f~~~~~---~~~~~~f~~~A~~~-~~--~~F~-~-~~~~~~~~~~~~~~~~~-~~~~~t~---~~~v~~~~~  112 (216)
                      .+++++|.|+.+||   ....+.+.+++.++ .+  +.|. + ++.....|.+.+...+- ...+...   +..+++.|+
T Consensus        32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  111 (148)
T 3fkf_A           32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYA  111 (148)
T ss_dssp             TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT
T ss_pred             CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcC
Confidence            56789999998876   56677888888887 43  4442 1 12223344444433321 1111111   457899999


Q ss_pred             CCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942         113 VDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       113 v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                      +.. |+++++.+  ++.+.+...  +.+.|.++|..
T Consensus       112 v~~~P~~~lid~--~G~i~~~~~--~~~~l~~~l~~  143 (148)
T 3fkf_A          112 ILTLPTNILLSP--TGKILARDI--QGEALTGKLKE  143 (148)
T ss_dssp             CCSSSEEEEECT--TSBEEEESC--CHHHHHHHHHH
T ss_pred             CCCcCEEEEECC--CCeEEEecC--CHHHHHHHHHH
Confidence            986 99999964  234444332  66778887765

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=92.81  E-value=0.71  Score=34.84  Aligned_cols=87  Identities=10%  Similarity=0.160  Sum_probs=51.5

Q ss_pred             HHhHhCCCeEEEEEecCCChhH--HH--HH--HHHHhhC-CCceEEecchhhHHHHhhhhccccceeeec--ccHHHHHh
Q psy7942          40 KAFIADSKVVVAGLFKDASSEL--AK--TF--NEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTS--TNADILAE  110 (216)
Q Consensus        40 ~~~~~~~~v~~V~f~~~~~~~~--~~--~f--~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t--~~~~v~~~  110 (216)
                      ....+.++.++|.|+.+||...  ++  .|  .+|+..+ .++.+.              ++|     ..  ....+.++
T Consensus        36 ~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v--------------~~d-----~~~~~~~~l~~~   96 (153)
T 2dlx_A           36 ECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFW--------------QVY-----HDSEEGQRYIQF   96 (153)
T ss_dssp             HHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEE--------------EEE-----SSSHHHHHHHHH
T ss_pred             HHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEE--------------EEe-----cCCHhHHHHHHH
Confidence            3444568999999999998322  21  22  2333333 344443              232     21  23457889


Q ss_pred             cCCCC-CeEEEEecC-CCCcccccCCCCCHHHHHHHHhh
Q psy7942         111 YSVDD-DTVAIFKKF-DEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       111 ~~v~~-p~i~~~~~~-de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                      |++.+ |+++++.+. .+....+.| . +.+.+..++..
T Consensus        97 y~v~~~P~~~fld~~~G~~l~~~~g-~-~~~~fl~~L~~  133 (153)
T 2dlx_A           97 YKLGDFPYVSILDPRTGQKLVEWHQ-L-DVSSFLDQVTG  133 (153)
T ss_dssp             HTCCSSSEEEEECTTTCCCCEEESS-C-CHHHHHHHHHH
T ss_pred             cCCCCCCEEEEEeCCCCcEeeecCC-C-CHHHHHHHHHH
Confidence            99986 999999864 223333556 6 88877776654

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=92.68  E-value=0.2  Score=37.50  Aligned_cols=58  Identities=14%  Similarity=0.120  Sum_probs=45.7

Q ss_pred             eeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         153 VVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       153 v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      +.+++.+++......+ ++.++.|+..+.+....+...+.++|++|.+++.|+.+|...
T Consensus        49 ~~~l~~~~f~~~~~~~-~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~  106 (155)
T 2ppt_A           49 VAGIDPAILARAERDD-LPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQA  106 (155)
T ss_dssp             EEECCHHHHHHHTTCS-SCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTT
T ss_pred             CccCCHHHHHHHHhCC-CcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCc
Confidence            6678888887766444 345666888887778889999999999999889998887643

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=92.65  E-value=0.27  Score=35.00  Aligned_cols=62  Identities=15%  Similarity=0.094  Sum_probs=47.0

Q ss_pred             CCceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhcc-----CceEEEEcCCCC
Q psy7942         150 LPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFR-----EKEEQDEDDDQP  211 (216)
Q Consensus       150 ~P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r-----~~~~f~~~d~~~  211 (216)
                      -+.+.+++.+++.......-+..++.|+..++..+......+.++|+++.     +++.|+.+|...
T Consensus        14 ~~~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~   80 (127)
T 3h79_A           14 PSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEK   80 (127)
T ss_dssp             CCCCEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTT
T ss_pred             CCceEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccc
Confidence            34688999999987764322455666888888888999999999998764     568888887653

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=92.62  E-value=0.23  Score=34.09  Aligned_cols=58  Identities=14%  Similarity=0.098  Sum_probs=43.6

Q ss_pred             eeee-CcchHHHhhcc----CCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         153 VVEF-NHETAQKIFGG----EIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       153 v~~~-~~~~~~~~~~~----~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      +.++ +.+++......    + ++.++.|...+.+........+.+++++|.+++.|+.+|...
T Consensus         4 v~~i~~~~~~~~~l~~~~~~~-~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~   66 (112)
T 1ep7_A            4 VIVIDSKAAWDAQLAKGKEEH-KPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDA   66 (112)
T ss_dssp             EEEECSHHHHHHHHHHHHHHT-CCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTT
T ss_pred             EEEecCHHHHHHHHHhhcccC-CeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence            5566 35677666653    4 355667888888888889999999999999888888887643

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=92.60  E-value=0.34  Score=34.82  Aligned_cols=59  Identities=5%  Similarity=-0.039  Sum_probs=42.9

Q ss_pred             CCceeeeCcchHHHhhccCCc--ceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCC
Q psy7942         150 LPLVVEFNHETAQKIFGGEIK--SHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDD  209 (216)
Q Consensus       150 ~P~v~~~~~~~~~~~~~~~~~--~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~  209 (216)
                      +..+.+++.+++........+  +.++-|+..+.+....+...|.++|++|. ++.|+.+|.
T Consensus         2 ~G~v~~it~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~-~v~f~kvd~   62 (118)
T 3evi_A            2 FGELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFP-ETKFVKAIV   62 (118)
T ss_dssp             CCSCEECCGGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCT-TSEEEEEEG
T ss_pred             CcceEEeCHHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-CCEEEEEEh
Confidence            456788888888764443212  33444888888888899999999999997 477777664

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=92.35  E-value=0.32  Score=34.05  Aligned_cols=62  Identities=13%  Similarity=0.016  Sum_probs=45.4

Q ss_pred             CCCceeeeCcchHHHhhcc---CCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         149 SLPLVVEFNHETAQKIFGG---EIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       149 ~~P~v~~~~~~~~~~~~~~---~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      ..|.+...+.+++......   .-++.++.|...+.+........+.+++++|.+ +.|+.+|...
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~vd~~~   75 (122)
T 2vlu_A           11 AAEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN-AVFLKVDVDE   75 (122)
T ss_dssp             -CCCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETTT
T ss_pred             CCcceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-cEEEEEECCC
Confidence            3456677787777766543   224556668888888888899999999999987 8888877543

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=92.34  E-value=0.42  Score=34.46  Aligned_cols=98  Identities=9%  Similarity=0.069  Sum_probs=57.9

Q ss_pred             CCeEEEEEecCCChhH---HHHHHH---HHhhC--CCceE-Eec-chhhHHHHhhhhccccc-eeeecccH--HHHHhcC
Q psy7942          46 SKVVVAGLFKDASSEL---AKTFNE---IASKV--DDLVF-DAS-SELAKTFNEIASKVDDL-VFVTSTNA--DILAEYS  112 (216)
Q Consensus        46 ~~v~~V~f~~~~~~~~---~~~f~~---~A~~~--~~~~F-~~~-~~~~~~~~~~~~~~~~~-~~~~t~~~--~v~~~~~  112 (216)
                      .++++|.|+.+||...   .+.+.+   +..++  ..+.+ +++ +.....|.+.+....-. ......+.  .+.+.|+
T Consensus        31 gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  110 (142)
T 3eur_A           31 AEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLYD  110 (142)
T ss_dssp             CSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCSC
T ss_pred             CCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhcC
Confidence            5889999999998544   445666   55555  34443 222 23345566555554321 11111111  2577889


Q ss_pred             CCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942         113 VDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       113 v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                      +.. |+++++.+  ++.+.+.+ . ..+.|.+||++
T Consensus       111 v~~~P~~~lid~--~G~i~~~~-~-~~~~l~~~l~e  142 (142)
T 3eur_A          111 LRAIPTLYLLDK--NKTVLLKD-A-TLQKVEQYLAE  142 (142)
T ss_dssp             CTTCSEEEEECT--TCBEEEEE-E-CHHHHHHHHHC
T ss_pred             CCcCCeEEEECC--CCcEEecC-C-CHHHHHHHHhC
Confidence            876 99999974  34556543 3 67889998863

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=92.31  E-value=0.19  Score=35.36  Aligned_cols=59  Identities=12%  Similarity=0.021  Sum_probs=44.6

Q ss_pred             CCceeeeCcchHHHhhc--cCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         150 LPLVVEFNHETAQKIFG--GEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       150 ~P~v~~~~~~~~~~~~~--~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      .+.....+.+++..++.  .+ ++.++.|...+.+........+.+++++|.+ +.|+.+|..
T Consensus        11 ~~~~~~~t~~~f~~~l~~~~~-k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~vd~d   71 (116)
T 3qfa_C           11 GSVKQIESKTAFQEALDAAGD-KLVVVDFSATWCGPSKMIKPFFHSLSEKYSN-VIFLEVDVD   71 (116)
T ss_dssp             -CCBCCCCHHHHHHHHHHHTT-SCEEEEEECTTCHHHHHHHHHHHHHHTTCTT-SEEEEEETT
T ss_pred             CcccCCCCHHHHHHHHHhcCC-CEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECC
Confidence            34555667777777766  34 3456668888888888999999999999987 888887764

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=92.29  E-value=0.43  Score=41.11  Aligned_cols=102  Identities=10%  Similarity=0.038  Sum_probs=63.3

Q ss_pred             CCCeEEEEEecCCCh---hHHHHHHHHHhhCC--CceE-Eec------chhhHHHHhhhhcccc-ceeeecccHHHHHhc
Q psy7942          45 DSKVVVAGLFKDASS---ELAKTFNEIASKVD--DLVF-DAS------SELAKTFNEIASKVDD-LVFVTSTNADILAEY  111 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~--~~~F-~~~------~~~~~~~~~~~~~~~~-~~~~~t~~~~v~~~~  111 (216)
                      ..++++|.|+.+||.   ...+.+.++++++.  .+.| +++      ....+.+.+.+.+..- .-++...+..+++.|
T Consensus        81 ~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~~l~~~y  160 (352)
T 2hyx_A           81 RGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNYATWTNY  160 (352)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTSHHHHHT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcHHHHHHc
Confidence            367899999999985   44567777777762  3443 322      1223444444444332 111133456789999


Q ss_pred             CCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942         112 SVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       112 ~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                      ++.. |+++++-+...-...+.|.. +.+.|.++|..
T Consensus       161 gV~~~Pt~~lID~~G~Iv~~~~G~~-~~~~l~~~I~~  196 (352)
T 2hyx_A          161 RNRYWPAEYLIDATGTVRHIKFGEG-DYNVTETLVRQ  196 (352)
T ss_dssp             TCCEESEEEEECTTSBEEEEEESBC-CHHHHHHHHHH
T ss_pred             CCCccCEEEEEeCCCeEEEEEcCCC-CHHHHHHHHHH
Confidence            9986 99998854222234467877 78888888865

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=92.03  E-value=0.23  Score=36.01  Aligned_cols=60  Identities=18%  Similarity=0.191  Sum_probs=34.8

Q ss_pred             CceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         151 PLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       151 P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      +.+.+++.+++......+- ..++.|+..+.+....+...+.+++++|.+++.|+.+|...
T Consensus        33 ~~v~~l~~~~~~~~~~~~~-~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~   92 (140)
T 1v98_A           33 PWVVEADEKGFAQEVAGAP-LTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDE   92 (140)
T ss_dssp             ----------------CCC-EEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTT
T ss_pred             CccccCCHHHHHHHHHcCC-CEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCC
Confidence            5566778877776554432 35666888887888899999999999999889998888653

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=91.90  E-value=0.37  Score=33.32  Aligned_cols=60  Identities=12%  Similarity=0.077  Sum_probs=44.9

Q ss_pred             CCCceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         149 SLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       149 ~~P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      +.+....++.+++......+ ++.++.|...+.+........+.++++++. ++.|+.+|..
T Consensus         7 ~~~~~~~~~~~~f~~~~~~~-k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~-~v~~~~vd~~   66 (112)
T 1syr_A            7 HHMVKIVTSQAEFDSIISQN-ELVIVDFFAEWCGPCKRIAPFYEECSKTYT-KMVFIKVDVD   66 (112)
T ss_dssp             --CCEEECSHHHHHHHHHHC-SEEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETT
T ss_pred             ceeEEEECCHHHHHHHHccC-CeEEEEEECCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECC
Confidence            34456677788888877765 345666888888888899999999999997 4888777754

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=91.86  E-value=0.56  Score=35.73  Aligned_cols=101  Identities=11%  Similarity=0.201  Sum_probs=58.3

Q ss_pred             CCCeEEEEEecCCCh---hHHHHHHHHHhhC--CCceE-Eecc--------hhhHHHHhhhhcccc-ceeeecccHHHHH
Q psy7942          45 DSKVVVAGLFKDASS---ELAKTFNEIASKV--DDLVF-DASS--------ELAKTFNEIASKVDD-LVFVTSTNADILA  109 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~--~~~~F-~~~~--------~~~~~~~~~~~~~~~-~~~~~t~~~~v~~  109 (216)
                      .+.+++|.|+..||.   ...+.+.+++.++  .++.| +++-        ...+.+.+.+.+..- .-++...+..+++
T Consensus        45 gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~  124 (196)
T 2ywi_A           45 SDAATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQEVAK  124 (196)
T ss_dssp             CSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSCHHHH
T ss_pred             CCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCchHHHH
Confidence            334588889999984   4456677777766  23443 2221        223333333333321 1111234567889


Q ss_pred             hcCCCC-CeEEEEecCCCCccc-----------ccCCCCCHHHHHHHHhhc
Q psy7942         110 EYSVDD-DTVAIFKKFDEGRVN-----------YEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       110 ~~~v~~-p~i~~~~~~de~~~~-----------y~G~~~~~~~l~~fi~~~  148 (216)
                      .|++.. |+++++.+.  +.+.           +.|.. +.+.|.++|...
T Consensus       125 ~~~v~~~P~~~lid~~--G~i~~~~~~~~~~~~~~g~~-~~~~l~~~i~~l  172 (196)
T 2ywi_A          125 AYDAACTPDFYIFDRD--LKCVYRGQLDDSRPNNGIPV-TGESIRAALDAL  172 (196)
T ss_dssp             HHTCCEESEEEEEETT--CBEEEEECSSSCCTTTCCCC-CCHHHHHHHHHH
T ss_pred             HhCCCCCCeEEEEcCC--CeEEEccccCcccccccCcc-CHHHHHHHHHHH
Confidence            999975 999998642  2333           34666 677888887653

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=91.85  E-value=0.32  Score=34.85  Aligned_cols=57  Identities=18%  Similarity=0.220  Sum_probs=44.7

Q ss_pred             ceeeeCc-chHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         152 LVVEFNH-ETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       152 ~v~~~~~-~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      .+.+++. +++......+ ++.++.|+..+++.+......+.++++++. ++.|+.+|..
T Consensus        20 mv~~l~~~~~f~~~~~~~-k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~d   77 (125)
T 1r26_A           20 SVVDVYSVEQFRNIMSED-ILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDAD   77 (125)
T ss_dssp             CCEEECCHHHHHHHHHSS-SCEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEETT
T ss_pred             ceEECCCHHHHHHHHccC-CEEEEEEECCcCHhHHHHHHHHHHHHHHCC-CCEEEEEECC
Confidence            3778888 8888777555 455667888888888899999999999995 5888887754

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=91.62  E-value=0.49  Score=37.38  Aligned_cols=61  Identities=8%  Similarity=0.189  Sum_probs=48.0

Q ss_pred             CCceeeeCcchHHH-hhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         150 LPLVVEFNHETAQK-IFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       150 ~P~v~~~~~~~~~~-~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      .+.+..+|.+++.. +...+ ++.++.|+..+++.+......+.+++++|.+++.|+.+|...
T Consensus        11 ~~~~~~lt~~~f~~~v~~~~-k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~   72 (222)
T 3dxb_A           11 SDKIIHLTDDSFDTDVLKAD-GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ   72 (222)
T ss_dssp             SCCCEECCTTTHHHHHTTCS-SCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTT
T ss_pred             CCCceeCCHHHHHHHHHhcC-CEEEEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCC
Confidence            45678899999876 45544 455666888888888999999999999999988887766543

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=91.52  E-value=1.1  Score=33.08  Aligned_cols=101  Identities=6%  Similarity=-0.016  Sum_probs=57.4

Q ss_pred             CCCeEEEEEecCCChh----HHHHHHHHHhhC------CCceE-Eec-c---hhhHHHHhhhhcccc-ceeeecc----c
Q psy7942          45 DSKVVVAGLFKDASSE----LAKTFNEIASKV------DDLVF-DAS-S---ELAKTFNEIASKVDD-LVFVTST----N  104 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~~----~~~~f~~~A~~~------~~~~F-~~~-~---~~~~~~~~~~~~~~~-~~~~~t~----~  104 (216)
                      ..++++|.|+..||..    ....+.++..++      +++.+ +++ +   .....+...+.+.+- ..+ .+.    .
T Consensus        25 ~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~-l~~~~~~~  103 (171)
T 2rli_A           25 RGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLG-LTGSTKQV  103 (171)
T ss_dssp             TTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCE-EECCHHHH
T ss_pred             CCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEE-EeCCHHHH
Confidence            3578999999998864    355666666655      24543 222 1   123333444443322 111 121    1


Q ss_pred             HHHHHhcCCCC-C---------------eEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942         105 ADILAEYSVDD-D---------------TVAIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       105 ~~v~~~~~v~~-p---------------~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                      ..+++.|++.. |               +++++-+...-...|.|.. +.+.|.+.|..
T Consensus       104 ~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~-~~~~l~~~l~~  161 (171)
T 2rli_A          104 AQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSR-SAEQISDSVRR  161 (171)
T ss_dssp             HHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSC-CHHHHHHHHHH
T ss_pred             HHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCC-CHHHHHHHHHH
Confidence            25788899864 5               6666654223234467887 88888888765

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=91.34  E-value=1.5  Score=31.73  Aligned_cols=99  Identities=12%  Similarity=0.182  Sum_probs=58.2

Q ss_pred             CCCeEEEEEecCCChh-----HHHHHHHHHhhC---CCceE-Eec-chhhHHHHhhhhcccc-ceeeecc---cHHHHHh
Q psy7942          45 DSKVVVAGLFKDASSE-----LAKTFNEIASKV---DDLVF-DAS-SELAKTFNEIASKVDD-LVFVTST---NADILAE  110 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~~-----~~~~f~~~A~~~---~~~~F-~~~-~~~~~~~~~~~~~~~~-~~~~~t~---~~~v~~~  110 (216)
                      .+++++|.|+..||..     ..+.+.++..++   .++.| +++ +.....|.+.+.+..- ...+...   +..+++.
T Consensus        32 ~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  111 (150)
T 3fw2_A           32 KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQ  111 (150)
T ss_dssp             TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHH
Confidence            4678999999999876     455677777766   23443 221 2223445554443321 1111111   3478999


Q ss_pred             cCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942         111 YSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       111 ~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                      |++.. |+++++.+  ++.+.+.. . +.+.|.++|..
T Consensus       112 ~~v~~~P~~~lid~--~G~i~~~~-~-~~~~l~~~l~~  145 (150)
T 3fw2_A          112 YSIYKIPANILLSS--DGKILAKN-L-RGEELKKKIEN  145 (150)
T ss_dssp             TTCCSSSEEEEECT--TSBEEEES-C-CHHHHHHHHHH
T ss_pred             cCCCccCeEEEECC--CCEEEEcc-C-CHHHHHHHHHH
Confidence            99986 99999964  23444433 2 56777777654

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=91.16  E-value=0.48  Score=35.32  Aligned_cols=62  Identities=11%  Similarity=0.038  Sum_probs=41.3

Q ss_pred             HhhcCCCceeeeCcchHHHhhccCCcceEEEEEeCCc--cchhhhhHHHHHHHHhccCceEEEEcCC
Q psy7942         145 LSTQSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAA--GHYESHFEPVQTVAKDFREKEEQDEDDD  209 (216)
Q Consensus       145 i~~~~~P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~--~~~~~~~~~l~~vA~~~r~~~~f~~~d~  209 (216)
                      +..+.+|   ++|.+++.........+.++-|.....  .....+...|.++|++|.+++.|+.+|.
T Consensus        12 ~~~~g~~---~vt~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdv   75 (137)
T 2qsi_A           12 ARPNAPT---LVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAA   75 (137)
T ss_dssp             -----CE---EECTTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECG
T ss_pred             HHhcCCc---ccCHhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEEC
Confidence            3444444   778888876655442233444665555  6677889999999999999998888774

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.12  E-value=0.36  Score=34.13  Aligned_cols=58  Identities=10%  Similarity=0.064  Sum_probs=45.8

Q ss_pred             CCceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccC-ceEEEEcCCC
Q psy7942         150 LPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFRE-KEEQDEDDDQ  210 (216)
Q Consensus       150 ~P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~-~~~f~~~d~~  210 (216)
                      ...+.+++.+++..+...   ..++.|....++.+......+.++++++.+ ++.|+.+|..
T Consensus         6 ~~~v~~l~~~~f~~~~~~---~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~   64 (126)
T 1x5e_A            6 SGNVRVITDENWRELLEG---DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVT   64 (126)
T ss_dssp             CCSEEECCTTTHHHHTSS---EEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETT
T ss_pred             CCccEEecHHHHHHHhCC---CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECc
Confidence            345788999998887653   246668888888888999999999999986 6888887754

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=90.92  E-value=0.48  Score=31.80  Aligned_cols=56  Identities=16%  Similarity=0.189  Sum_probs=40.3

Q ss_pred             eeeCc-chHHHhhcc-CCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         154 VEFNH-ETAQKIFGG-EIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       154 ~~~~~-~~~~~~~~~-~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      .+++. +++...... .-++.++.|...+.+........+.++++++. ++.|+.+|..
T Consensus         2 ~~i~~~~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~   59 (104)
T 2vim_A            2 RVLATAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-EVEFAKVDVD   59 (104)
T ss_dssp             EECCSHHHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETT
T ss_pred             eecCCHHHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC-CCEEEEEecc
Confidence            45665 677766662 21345566888888888889999999999997 6888777754

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=90.90  E-value=0.37  Score=37.66  Aligned_cols=60  Identities=10%  Similarity=0.113  Sum_probs=48.2

Q ss_pred             CCceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         150 LPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       150 ~P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      -+.+..++.+++......+ ++.++.|...+++.+......+.++++++.+++.|+.+|..
T Consensus        96 ~~~v~~l~~~~f~~~~~~~-~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~  155 (210)
T 3apq_A           96 DPEIITLERREFDAAVNSG-ELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCG  155 (210)
T ss_dssp             CTTSEECCHHHHHHHHHHS-CCEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETT
T ss_pred             CCceEEecHHHHHHHHccC-CcEEEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECC
Confidence            3457788888887766555 35566788888888899999999999999998999888754

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=90.71  E-value=0.64  Score=31.87  Aligned_cols=57  Identities=16%  Similarity=0.128  Sum_probs=41.1

Q ss_pred             eeeeCc-chHHHhhcc---CCcceEEEEEeCCccchhhhhHHHHHHHHhcc-CceEEEEcCCC
Q psy7942         153 VVEFNH-ETAQKIFGG---EIKSHLLVFFSKAAGHYESHFEPVQTVAKDFR-EKEEQDEDDDQ  210 (216)
Q Consensus       153 v~~~~~-~~~~~~~~~---~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r-~~~~f~~~d~~  210 (216)
                      +.+++. +++......   + ++.++.|...+.+........+.+++++++ .++.|+.+|..
T Consensus         2 v~~i~~~~~~~~~~~~~~~~-~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~   63 (112)
T 3d6i_A            2 VIEINDQEQFTYLTTTAAGD-KLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDAD   63 (112)
T ss_dssp             EEEECCHHHHHHHHTTTTTT-CCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETT
T ss_pred             ccccCCHHHHHHHHhcccCC-CEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence            567776 778777764   3 345666888888888999999999999963 45888888754

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=90.65  E-value=0.59  Score=32.77  Aligned_cols=61  Identities=18%  Similarity=0.136  Sum_probs=46.2

Q ss_pred             CCCceeeeCcchHHHhhcc-CCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         149 SLPLVVEFNHETAQKIFGG-EIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       149 ~~P~v~~~~~~~~~~~~~~-~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      ....+.+++.+++...... .-++.++.|...+.+........+.++++++.+ +.|+.+|..
T Consensus        16 ~~~~v~~l~~~~~~~~~~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~-~~~~~vd~~   77 (124)
T 1faa_A           16 IVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD-VIFLKLDCN   77 (124)
T ss_dssp             TTTSEEEECTTTHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECS
T ss_pred             cCCceEEecchhHHHHHHhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCC-CEEEEEecC
Confidence            3456788898888776652 223556668888888888899999999999984 888888764

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=90.62  E-value=0.45  Score=33.75  Aligned_cols=59  Identities=12%  Similarity=-0.134  Sum_probs=44.2

Q ss_pred             CceeeeCcchHHHhhcc-CCcceEEEEEeC-------CccchhhhhHHHHHHHHhccCceEEEEcCC
Q psy7942         151 PLVVEFNHETAQKIFGG-EIKSHLLVFFSK-------AAGHYESHFEPVQTVAKDFREKEEQDEDDD  209 (216)
Q Consensus       151 P~v~~~~~~~~~~~~~~-~~~~~lllf~~~-------~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~  209 (216)
                      +.+...+.+++...... .-++.++.|...       ..+........+.++++++++++.|+.+|.
T Consensus         5 ~~v~~~~~~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~   71 (123)
T 1wou_A            5 EEVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQV   71 (123)
T ss_dssp             EEEEEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEEC
T ss_pred             eeEEeccHHHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEEC
Confidence            34555667777766654 223445668888       788888899999999999998999988876

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=90.54  E-value=2.9  Score=29.63  Aligned_cols=100  Identities=18%  Similarity=0.192  Sum_probs=57.7

Q ss_pred             CCCeEEEEEecCCChhHHHH---HHH---HHhhC--CCceEE-ec-chhhHHHHhhhhcccc-ceeeecccHHHHH--hc
Q psy7942          45 DSKVVVAGLFKDASSELAKT---FNE---IASKV--DDLVFD-AS-SELAKTFNEIASKVDD-LVFVTSTNADILA--EY  111 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~~~~~~---f~~---~A~~~--~~~~F~-~~-~~~~~~~~~~~~~~~~-~~~~~t~~~~v~~--~~  111 (216)
                      ..++++|.|+.+||......   +.+   +..++  .++.|. ++ +...+.|...+.+..- ...+...+..+..  .|
T Consensus        26 ~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  105 (142)
T 3ewl_A           26 KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLY  105 (142)
T ss_dssp             CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCS
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHc
Confidence            46889999999998655443   433   55554  334432 21 2233444444443321 1111223334443  88


Q ss_pred             CCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         112 SVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       112 ~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ++.. |+++++.+  ++.+.+ +.. +.+.|.++|...
T Consensus       106 ~v~~~P~~~lid~--~G~i~~-~~~-~~~~l~~~l~~~  139 (142)
T 3ewl_A          106 DIRATPTIYLLDG--RKRVIL-KDT-SMEQLIDYLATQ  139 (142)
T ss_dssp             CCCSSSEEEEECT--TCBEEE-CSC-CHHHHHHHHHC-
T ss_pred             CCCCCCeEEEECC--CCCEEe-cCC-CHHHHHHHHHHH
Confidence            9876 99999974  335555 556 889999999865

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=90.53  E-value=0.63  Score=32.43  Aligned_cols=59  Identities=7%  Similarity=-0.017  Sum_probs=46.1

Q ss_pred             CCceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCC
Q psy7942         150 LPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDD  209 (216)
Q Consensus       150 ~P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~  209 (216)
                      ...+..++.+++......+ ++.++.|..++++........+.++++++..++.++.+|.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~-~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~~~~   69 (118)
T 1zma_A           11 IKDLEVTTVVRAQEALDKK-ETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEE   69 (118)
T ss_dssp             TTTSEECCHHHHHHHHHTT-CCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTC
T ss_pred             HhhhhcCCHHHHHHHHhCC-CeEEEEEECCCCccHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence            3456778888887776665 3556668888888889999999999999988888886654

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=90.44  E-value=0.81  Score=31.09  Aligned_cols=57  Identities=12%  Similarity=0.127  Sum_probs=41.8

Q ss_pred             eeee-CcchHHHhhc--cCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         153 VVEF-NHETAQKIFG--GEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       153 v~~~-~~~~~~~~~~--~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      +.++ +.+++.....  .+ ++.++.|...+.+........+.++|+++ +++.|+.+|...
T Consensus         3 v~~i~~~~~~~~~~~~~~~-~~v~v~f~a~wC~~C~~~~~~~~~~~~~~-~~~~~~~vd~~~   62 (107)
T 1gh2_A            3 VKPVGSDPDFQPELSGAGS-RLAVVKFTMRGCGPCLRIAPAFSSMSNKY-PQAVFLEVDVHQ   62 (107)
T ss_dssp             EEEECSGGGHHHHHHHTTT-SCEEEEEECSSCHHHHHHHHHHHHHHHHC-TTSEEEEEETTT
T ss_pred             eEEecCHHHHHHHHHhCCC-CEEEEEEECCCChhhHHHHHHHHHHHHHC-CCcEEEEEECcc
Confidence            4455 4567777663  33 34566688888888889999999999999 468888877643

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=90.43  E-value=2.3  Score=30.44  Aligned_cols=99  Identities=12%  Similarity=0.151  Sum_probs=57.5

Q ss_pred             CCCeEEEEEecCCChhH---HHHHHHHHhhC--CCceE-Eecc-hhhHHHHhhhhccccc--eeeecc---cHHHHHhcC
Q psy7942          45 DSKVVVAGLFKDASSEL---AKTFNEIASKV--DDLVF-DASS-ELAKTFNEIASKVDDL--VFVTST---NADILAEYS  112 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~~~---~~~f~~~A~~~--~~~~F-~~~~-~~~~~~~~~~~~~~~~--~~~~t~---~~~v~~~~~  112 (216)
                      .+++++|.|+..||...   .+.+.++..++  .++.+ ++|- .....|.+.+.+..-.  ..+...   +..+++.|+
T Consensus        31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  110 (143)
T 4fo5_A           31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYD  110 (143)
T ss_dssp             SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHHHHTT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHHHHcC
Confidence            45789999999998544   45677777777  23443 2221 2234454444433210  011111   246888999


Q ss_pred             CCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942         113 VDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       113 v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                      +.. |+.+++.+  ++.+.+.+ . ..+.|.++|..
T Consensus       111 v~~~P~~~lid~--~G~i~~~~-~-~~~~l~~~l~~  142 (143)
T 4fo5_A          111 LRKGFKNFLIND--EGVIIAAN-V-TPEKLTEILKA  142 (143)
T ss_dssp             GGGCCCEEEECT--TSBEEEES-C-CHHHHHHHHTC
T ss_pred             CCCCCcEEEECC--CCEEEEcc-C-CHHHHHHHHHh
Confidence            875 99888875  34555543 3 56778877753

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=90.40  E-value=0.5  Score=32.14  Aligned_cols=58  Identities=12%  Similarity=0.140  Sum_probs=45.4

Q ss_pred             ceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhcc---CceEEEEcCCCC
Q psy7942         152 LVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFR---EKEEQDEDDDQP  211 (216)
Q Consensus       152 ~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r---~~~~f~~~d~~~  211 (216)
                      .+..++.+++......  ++.++.|...+.+........+.++++++.   ..+.++.+|...
T Consensus         6 ~v~~l~~~~~~~~~~~--~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~   66 (111)
T 3uvt_A            6 TVLALTENNFDDTIAE--GITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTA   66 (111)
T ss_dssp             CSEECCTTTHHHHHHS--SEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTT
T ss_pred             cceEcChhhHHHHhcC--CcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccc
Confidence            5678899998887773  345666888888888899999999999986   458888777643

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=90.21  E-value=1.5  Score=32.74  Aligned_cols=87  Identities=16%  Similarity=0.111  Sum_probs=51.0

Q ss_pred             CCCeEEEEEecCCCh---hHHHHHHHHHhhCC---CceE--EecchhhHHHHhhhhccccceeeec---ccHHHHHhcCC
Q psy7942          45 DSKVVVAGLFKDASS---ELAKTFNEIASKVD---DLVF--DASSELAKTFNEIASKVDDLVFVTS---TNADILAEYSV  113 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~---~~~F--~~~~~~~~~~~~~~~~~~~~~~~~t---~~~~v~~~~~v  113 (216)
                      .+++++|.|+.+||.   ...+.+.+++.++.   ++.+  ...+...+.+.+...+..-.-+...   .+..+++.|++
T Consensus        47 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  126 (165)
T 3s9f_A           47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSV  126 (165)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcCC
Confidence            468899999999984   44567777777763   3333  2123334445554444321000001   11578999999


Q ss_pred             CC-CeEEEEecCCCCccccc
Q psy7942         114 DD-DTVAIFKKFDEGRVNYE  132 (216)
Q Consensus       114 ~~-p~i~~~~~~de~~~~y~  132 (216)
                      .. |+++++.+. .+.+.+.
T Consensus       127 ~~~Pt~~lid~~-~G~iv~~  145 (165)
T 3s9f_A          127 ESIPTLIGLNAD-TGDTVTT  145 (165)
T ss_dssp             CSSSEEEEEETT-TCCEEES
T ss_pred             CCCCEEEEEeCC-CCEEEec
Confidence            86 999999862 1345543

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=90.14  E-value=0.28  Score=35.02  Aligned_cols=59  Identities=8%  Similarity=0.173  Sum_probs=38.0

Q ss_pred             ceeeeCcchHHHh-hccCCcceEEEEEeCCcc--------------chhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         152 LVVEFNHETAQKI-FGGEIKSHLLVFFSKAAG--------------HYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       152 ~v~~~~~~~~~~~-~~~~~~~~lllf~~~~~~--------------~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      .+.+++.+++... ...+ ++.++.|...+.+              ........+.++++++.+++.|+.+|...
T Consensus         4 ~v~~l~~~~f~~~~~~~~-k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~   77 (123)
T 1oaz_A            4 KIIHLTDDSFDTDVLKAD-GAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQ   77 (123)
T ss_dssp             SCEECCSTTHHHHTTSCS-SEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTS
T ss_pred             ccEecChhhHHHHHHhCC-CeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCC
Confidence            3667888888744 3444 4556668888888              78888899999999999888888877543

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=90.00  E-value=1.4  Score=32.14  Aligned_cols=95  Identities=17%  Similarity=0.172  Sum_probs=52.7

Q ss_pred             CCCeEEEEEecCCChh---HHHHHHHHHhhC--CCceE-Eec-chhhHHHHhhhhccccceeeecccH---HHHHhcCCC
Q psy7942          45 DSKVVVAGLFKDASSE---LAKTFNEIASKV--DDLVF-DAS-SELAKTFNEIASKVDDLVFVTSTNA---DILAEYSVD  114 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~~---~~~~f~~~A~~~--~~~~F-~~~-~~~~~~~~~~~~~~~~~~~~~t~~~---~v~~~~~v~  114 (216)
                      .+++++|.|+.+||..   ..+.+.+++.++  ..+.+ +++ +.....+.....++. ...+...+.   .+++.|++.
T Consensus        34 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~v~  112 (152)
T 2lrt_A           34 KGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLP-WVCVRDANGAYSSYISLYNVT  112 (152)
T ss_dssp             GGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCS-SEEEECSSGGGCHHHHHHTCC
T ss_pred             CCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCC-ceEEECCCCcchHHHHHcCcc
Confidence            3578899999999853   456777777766  22443 221 222233333333332 212122233   288999997


Q ss_pred             C-CeEEEEecCCCCcccccCCCCCHHHH
Q psy7942         115 D-DTVAIFKKFDEGRVNYEGPASDEAAL  141 (216)
Q Consensus       115 ~-p~i~~~~~~de~~~~y~G~~~~~~~l  141 (216)
                      . |+++++.+...-...+.|.. +.+..
T Consensus       113 ~~P~~~lid~~G~i~~~~~g~~-~~e~~  139 (152)
T 2lrt_A          113 NLPSVFLVNRNNELSARGENIK-DLDEA  139 (152)
T ss_dssp             SCSEEEEEETTTEEEEETTTCS-CHHHH
T ss_pred             cCceEEEECCCCeEEEecCCHH-HHHHH
Confidence            5 99999975222233456665 54443

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=89.91  E-value=0.57  Score=32.99  Aligned_cols=61  Identities=11%  Similarity=0.090  Sum_probs=45.5

Q ss_pred             CCceeeeCc-chHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCc-eEEEEcCCCC
Q psy7942         150 LPLVVEFNH-ETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREK-EEQDEDDDQP  211 (216)
Q Consensus       150 ~P~v~~~~~-~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~-~~f~~~d~~~  211 (216)
                      .+.+..++. +++......+ ++.++.|...+.+........+.+++++++++ +.|+.+|...
T Consensus        14 ~~~~~~i~~~~~f~~~l~~~-k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~   76 (121)
T 2j23_A           14 RGSVQVISSYDQFKQVTGGD-KVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDE   76 (121)
T ss_dssp             CCCEEECCSHHHHHHHHSSS-SCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTT
T ss_pred             CcceEEcCCHHHHHHHHcCC-CEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcC
Confidence            345666665 6777777555 34566688888888889999999999999886 8888877643

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=89.63  E-value=2.4  Score=30.23  Aligned_cols=78  Identities=12%  Similarity=0.051  Sum_probs=46.7

Q ss_pred             CCCeEEEEEecCCCh---hHHHHHHHHHhhCC---CceEE-e-cchhhHHHHhhhhccccceeee---cccHHHHHhcCC
Q psy7942          45 DSKVVVAGLFKDASS---ELAKTFNEIASKVD---DLVFD-A-SSELAKTFNEIASKVDDLVFVT---STNADILAEYSV  113 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~---~~~F~-~-~~~~~~~~~~~~~~~~~~~~~~---t~~~~v~~~~~v  113 (216)
                      .+++++|.|+.+||.   ...+.+.+++.++.   ++.+. + ++.....+.+.+.+..-.-+-.   ..+..+++.|++
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  106 (144)
T 1i5g_A           27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDV  106 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcCC
Confidence            467899999999985   44567777777763   34332 1 2223444444444432100000   123578899999


Q ss_pred             CC-CeEEEEe
Q psy7942         114 DD-DTVAIFK  122 (216)
Q Consensus       114 ~~-p~i~~~~  122 (216)
                      .. |+++++.
T Consensus       107 ~~~P~~~lid  116 (144)
T 1i5g_A          107 KSIPTLVGVE  116 (144)
T ss_dssp             CSSSEEEEEE
T ss_pred             CCCCEEEEEE
Confidence            86 9999997

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=89.29  E-value=2.6  Score=30.21  Aligned_cols=78  Identities=13%  Similarity=0.076  Sum_probs=47.1

Q ss_pred             CCCeEEEEEecCCCh---hHHHHHHHHHhhCC---CceEE--ecchhhHHHHhhhhccccceeee---cccHHHHHhcCC
Q psy7942          45 DSKVVVAGLFKDASS---ELAKTFNEIASKVD---DLVFD--ASSELAKTFNEIASKVDDLVFVT---STNADILAEYSV  113 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~---~~~F~--~~~~~~~~~~~~~~~~~~~~~~~---t~~~~v~~~~~v  113 (216)
                      .+++++|.|+.+||.   ...+.+.+++.++.   ++.+.  -++...+.+.+.+.+..-.-+-.   ..+..+++.|++
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  106 (146)
T 1o8x_A           27 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNV  106 (146)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTTC
T ss_pred             CCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhCC
Confidence            467899999999984   44567777777763   44332  12233444555444432100000   124578899999


Q ss_pred             CC-CeEEEEe
Q psy7942         114 DD-DTVAIFK  122 (216)
Q Consensus       114 ~~-p~i~~~~  122 (216)
                      .. |+++++.
T Consensus       107 ~~~Pt~~lid  116 (146)
T 1o8x_A          107 ESIPTLIGVD  116 (146)
T ss_dssp             CSSSEEEEEE
T ss_pred             CCCCEEEEEE
Confidence            76 9999997

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=89.12  E-value=0.42  Score=33.76  Aligned_cols=39  Identities=10%  Similarity=0.019  Sum_probs=32.6

Q ss_pred             cceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcC
Q psy7942         170 KSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDD  208 (216)
Q Consensus       170 ~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d  208 (216)
                      ++.++.|...+++.+......+.++++++++++.++.+|
T Consensus        27 k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~   65 (126)
T 2l57_A           27 IPTIIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYAR   65 (126)
T ss_dssp             SCEEEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEE
T ss_pred             CcEEEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEe
Confidence            345666888888888889999999999998889888887

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=89.05  E-value=0.36  Score=34.36  Aligned_cols=60  Identities=12%  Similarity=0.080  Sum_probs=40.4

Q ss_pred             CCceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         150 LPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       150 ~P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      .|.+...+.+........+ ++.++.|...+++.+......+.++++++++++.++.+|..
T Consensus        24 ~~~~~~~~~~~~~~~~~~~-k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d   83 (128)
T 3ul3_B           24 VPRLQQNGSNIINGVNMKN-TVIVLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLD   83 (128)
T ss_dssp             --CCCCCCCSSSSBTTSCC-SEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGG
T ss_pred             CCccccCCccHHHHHHccC-CEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECC
Confidence            4444444443333333333 34556688888888899999999999999988888887754

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=88.98  E-value=0.7  Score=31.08  Aligned_cols=57  Identities=14%  Similarity=0.121  Sum_probs=41.3

Q ss_pred             eeeeC-cchHHHhhc--cCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         153 VVEFN-HETAQKIFG--GEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       153 v~~~~-~~~~~~~~~--~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      +.+++ .+++.....  .+ ++.++.|...+.+........+.+++++|++ +.|+.+|...
T Consensus         2 v~~i~~~~~~~~~l~~~~~-~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~vd~~~   61 (105)
T 3m9j_A            2 VKQIESKTAFQEALDAAGD-KLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-VIFLEVDVDD   61 (105)
T ss_dssp             CEECCSHHHHHHHHHHTTT-SCEEEEEECTTCHHHHHHHHHHHHHHHHSTT-SEEEEEETTT
T ss_pred             eEEcCCHHHHHHHHHhcCC-CeEEEEEECCCChhhHHHHHHHHHHHHHccC-eEEEEEEhhh
Confidence            34553 456666665  33 3456668888888889999999999999987 8888877543

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=88.96  E-value=1.4  Score=33.26  Aligned_cols=102  Identities=9%  Similarity=0.206  Sum_probs=58.8

Q ss_pred             CCCeEEEEEecCCCh---hHHHHHHHHHhhCCC-ceE-Eecc--------hhhHHHHhhhhcccc-ceeeecccHHHHHh
Q psy7942          45 DSKVVVAGLFKDASS---ELAKTFNEIASKVDD-LVF-DASS--------ELAKTFNEIASKVDD-LVFVTSTNADILAE  110 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~-~~F-~~~~--------~~~~~~~~~~~~~~~-~~~~~t~~~~v~~~  110 (216)
                      ..++++|.|+..||.   .....+.+++.++.+ +.| +++-        .....+.+.+.+..- .-.+...+.++++.
T Consensus        32 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  111 (188)
T 2cvb_A           32 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA  111 (188)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcchHHHH
Confidence            358899999999985   446678888888733 543 2221        222333333333221 11112345678999


Q ss_pred             cCCCC-CeEEEEecCCCCcccccCCCC---------CHHHHHHHHhhc
Q psy7942         111 YSVDD-DTVAIFKKFDEGRVNYEGPAS---------DEAALRKFLSTQ  148 (216)
Q Consensus       111 ~~v~~-p~i~~~~~~de~~~~y~G~~~---------~~~~l~~fi~~~  148 (216)
                      |++.. |+++++.+  ++.+.+.|...         +.+.|.+.|...
T Consensus       112 ~~v~~~P~~~lid~--~G~i~~~g~~~~~~~~~g~~~~~~l~~~i~~l  157 (188)
T 2cvb_A          112 YRALRTPEVFLFDE--RRLLRYHGRVNDNPKDPSKVQSHDLEAAIEAL  157 (188)
T ss_dssp             TTCCEESEEEEECT--TCBEEEEECSSSCTTCGGGCCCCHHHHHHHHH
T ss_pred             cCCCCCCeEEEECC--CCcEEEEEecCCccccccccCHHHHHHHHHHH
Confidence            99986 99998864  23445544321         456677776653

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=88.95  E-value=1.5  Score=31.94  Aligned_cols=101  Identities=9%  Similarity=0.021  Sum_probs=55.5

Q ss_pred             CCCeEEEEEecCCChh-H---HHHHHHHHhhC-C-----CceE-Eecc----hhhHHHHhhhhcccc-ceeeecc----c
Q psy7942          45 DSKVVVAGLFKDASSE-L---AKTFNEIASKV-D-----DLVF-DASS----ELAKTFNEIASKVDD-LVFVTST----N  104 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~~-~---~~~f~~~A~~~-~-----~~~F-~~~~----~~~~~~~~~~~~~~~-~~~~~t~----~  104 (216)
                      ..++++|.|+..||.. .   .+.+.++..++ +     ++.+ +++-    .......+.+.+.+- ... .+.    .
T Consensus        22 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~-l~~~~d~~  100 (164)
T 2ggt_A           22 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVG-LTGTREEV  100 (164)
T ss_dssp             TTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEE-EECCHHHH
T ss_pred             CCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEE-EeCCHHHH
Confidence            3678899999998864 3   45566666554 1     4432 2221    112233333333321 111 111    2


Q ss_pred             HHHHHhcCCCC-C---------------eEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942         105 ADILAEYSVDD-D---------------TVAIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       105 ~~v~~~~~v~~-p---------------~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                      ..+++.|++.. |               +++++-+...-...|.|.. +.+.|.+.|..
T Consensus       101 ~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~-~~~~l~~~l~~  158 (164)
T 2ggt_A          101 DQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNK-RKGEIAASIAT  158 (164)
T ss_dssp             HHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTC-CHHHHHHHHHH
T ss_pred             HHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCC-CHHHHHHHHHH
Confidence            24788899864 6               6666654223234467777 88888888765

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=88.59  E-value=0.077  Score=35.89  Aligned_cols=57  Identities=18%  Similarity=0.239  Sum_probs=40.6

Q ss_pred             eeeeCcchHHHhh-ccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         153 VVEFNHETAQKIF-GGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       153 v~~~~~~~~~~~~-~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      +.+++.+++.... ..+ ++.++.|...+.+........+.++++++.+++.|+.+|..
T Consensus         3 v~~l~~~~~~~~~~~~~-~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~   60 (106)
T 2yj7_A            3 VIEVTDENFEQEVLKSD-KPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVD   60 (106)
Confidence            4566666665433 333 34466677777777888899999999999988888777654

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=88.91  E-value=0.92  Score=31.80  Aligned_cols=59  Identities=19%  Similarity=0.170  Sum_probs=42.4

Q ss_pred             Cceeee--CcchHH-HhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         151 PLVVEF--NHETAQ-KIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       151 P~v~~~--~~~~~~-~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      +.+..+  +.+++. .+...+ ++.++.|...+.+........|.++++++ +++.|+.+|...
T Consensus         3 ~~v~~~~g~~~~~~~~~~~~~-~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~~v~~~~vd~~~   64 (118)
T 2f51_A            3 DPIVHFNGTHEALLNRIKEAP-GLVLVDFFATWCGPCQRLGQILPSIAEAN-KDVTFIKVDVDK   64 (118)
T ss_dssp             CCSEEECSCHHHHHHHHHHCS-SCEEEEEECTTCHHHHHHHHHHHHHHHHC-TTSEEEEEETTT
T ss_pred             CcceEecCCHHHHHHHHHhCC-CEEEEEEECCCCHHHHHHHHHHHHHHHHC-CCeEEEEEECCC
Confidence            345666  455666 344444 34566688888888888999999999999 788888887643

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=88.81  E-value=2.2  Score=32.03  Aligned_cols=104  Identities=11%  Similarity=0.171  Sum_probs=55.2

Q ss_pred             CCCeEEEEEecCCCh---hHHHHHHHHHhhC--CCceEE-ec-c-hhhHHHHhhhhccc--cceeeecccHHHHHhcCC-
Q psy7942          45 DSKVVVAGLFKDASS---ELAKTFNEIASKV--DDLVFD-AS-S-ELAKTFNEIASKVD--DLVFVTSTNADILAEYSV-  113 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~--~~~~F~-~~-~-~~~~~~~~~~~~~~--~~~~~~t~~~~v~~~~~v-  113 (216)
                      ..++++|.|+..||.   .....+.++..++  .++.+. ++ + ...+.+...+.+..  ..-++...+..+.+.|++ 
T Consensus        59 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  138 (186)
T 1jfu_A           59 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAI  138 (186)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHHTT
T ss_pred             CCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHHhccc
Confidence            467889999999985   4456677777766  244432 11 1 11122222222222  111112233455666665 


Q ss_pred             ----CCCeEEEEecCCCCcccccCCCC-CHHHHHHHHhhc
Q psy7942         114 ----DDDTVAIFKKFDEGRVNYEGPAS-DEAALRKFLSTQ  148 (216)
Q Consensus       114 ----~~p~i~~~~~~de~~~~y~G~~~-~~~~l~~fi~~~  148 (216)
                          ..|+++++-+...-...|.|... +.+.|.++|...
T Consensus       139 ~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l  178 (186)
T 1jfu_A          139 GRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAA  178 (186)
T ss_dssp             TCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHH
T ss_pred             cccCCCCEEEEECCCCCEEEEEecCCccCHHHHHHHHHHH
Confidence                24999888642222334667641 367788888753

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=88.61  E-value=0.61  Score=32.59  Aligned_cols=58  Identities=5%  Similarity=0.134  Sum_probs=42.6

Q ss_pred             CceeeeCc-chHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         151 PLVVEFNH-ETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       151 P~v~~~~~-~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      +.+.++++ +.+..+...+ ++.++.|...+.+........+.++++++.+ +.|+.+|..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~-k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~-v~~~~vd~~   70 (114)
T 2oe3_A           12 TSITKLTNLTEFRNLIKQN-DKLVIDFYATWCGPCKMMQPHLTKLIQAYPD-VRFVKCDVD   70 (114)
T ss_dssp             GGSCBCCSHHHHHHHHHHC-SEEEEEEECTTCHHHHHTHHHHHHHHHHCTT-SEEEEEETT
T ss_pred             hheeecCCHHHHHHHHhCC-CEEEEEEECCCCHHHHHHHHHHHHHHHHCCC-CEEEEEECC
Confidence            44556654 4556666655 3456668888888888899999999999987 888887754

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=88.42  E-value=1.1  Score=31.04  Aligned_cols=56  Identities=11%  Similarity=0.183  Sum_probs=41.7

Q ss_pred             eeeeCc-chHHHhhcc-CCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         153 VVEFNH-ETAQKIFGG-EIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       153 v~~~~~-~~~~~~~~~-~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      +.+++. +++...... .-++.++.|...+.+........+.++++++  ++.|+.+|..
T Consensus        15 v~~l~~~~~~~~~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~--~~~~~~vd~~   72 (117)
T 2xc2_A           15 LIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY--DAIFVKVDVD   72 (117)
T ss_dssp             EEECCSTTHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS--SSEEEEEETT
T ss_pred             eEEeCCHHHHHHHHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc--CcEEEEEECC
Confidence            678887 777776662 2234566688888888888999999999998  6777776653

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=87.76  E-value=0.91  Score=31.23  Aligned_cols=54  Identities=7%  Similarity=0.079  Sum_probs=39.7

Q ss_pred             eeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         155 EFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      .-+.+++......+ ++.++.|...+.+........+.++++++.+ +.|+.+|..
T Consensus        11 ~~~~~~f~~~~~~~-k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~-~~~~~vd~~   64 (109)
T 3f3q_A           11 FKTASEFDSAIAQD-KLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ-ADFYKLDVD   64 (109)
T ss_dssp             CCSHHHHHHHTTSS-SCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETT
T ss_pred             CCCHHHHHHHHhcC-CEEEEEEECCcCHhHHHHHHHHHHHHHHCCC-CEEEEEECC
Confidence            33455666666655 4556668888888888999999999999975 777766653

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=87.44  E-value=1.6  Score=34.26  Aligned_cols=101  Identities=14%  Similarity=0.262  Sum_probs=59.8

Q ss_pred             CCCeEEEEEecCCCh---hHHHHHHHHHhhCC--CceE-Eecc--------hhhHHHHhhhhcccc-ceeeecccHHHHH
Q psy7942          45 DSKVVVAGLFKDASS---ELAKTFNEIASKVD--DLVF-DASS--------ELAKTFNEIASKVDD-LVFVTSTNADILA  109 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~--~~~F-~~~~--------~~~~~~~~~~~~~~~-~~~~~t~~~~v~~  109 (216)
                      ...+++|.|+..||.   ...+.+.+++.++.  .+.| +++-        ...+.+.+.+.+.+- .-++...+..+++
T Consensus        58 gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~  137 (218)
T 3u5r_E           58 DSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQSVAK  137 (218)
T ss_dssp             TCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTCHHHH
T ss_pred             CCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCccHHHH
Confidence            344688989999984   45677888888772  2443 3322        333344444443321 1121234567899


Q ss_pred             hcCCCC-CeEEEEecCCCCcccccCCCC----------CHHHHHHHHhh
Q psy7942         110 EYSVDD-DTVAIFKKFDEGRVNYEGPAS----------DEAALRKFLST  147 (216)
Q Consensus       110 ~~~v~~-p~i~~~~~~de~~~~y~G~~~----------~~~~l~~fi~~  147 (216)
                      .|++.. |+++++.+  ++.+.|.|...          +.+.|.+.|..
T Consensus       138 ~~~v~~~P~~~liD~--~G~i~~~g~~d~~~~~~~~~~~~~~l~~~i~~  184 (218)
T 3u5r_E          138 AYGAACTPDFFLYDR--ERRLVYHGQFDDARPGNGKDVTGADLRAAVDA  184 (218)
T ss_dssp             HHTCCEESEEEEECT--TCBEEEEECSSSCCTTSCCCCCCHHHHHHHHH
T ss_pred             HcCCCCCCeEEEECC--CCcEEEeccccccccccccccCHHHHHHHHHH
Confidence            999986 99999964  34566665321          35667776654

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=87.23  E-value=0.62  Score=31.71  Aligned_cols=50  Identities=18%  Similarity=0.135  Sum_probs=35.8

Q ss_pred             chHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         159 ETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       159 ~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      +++......+ ++.++.|..++.+........+.+++++|. ++.|+.+|..
T Consensus         9 ~~~~~~~~~~-~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~vd~~   58 (105)
T 4euy_A            9 EELATYIEEQ-QLVLLFIKTENCGVCDVMLRKVNYVLENYN-YVEKIEILLQ   58 (105)
T ss_dssp             -CCSSSTTCS-SEEEEEEEESSCHHHHHHHHHHHHHHHTCT-TEEEEEEEEC
T ss_pred             HHHHHHHhcC-CCEEEEEeCCCCcchHHHHHHHHHHHHHcC-CceEEEEECC
Confidence            4455555444 345666888888888899999999999994 6777766643

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=87.14  E-value=1.3  Score=30.06  Aligned_cols=57  Identities=16%  Similarity=0.050  Sum_probs=40.4

Q ss_pred             eeee-CcchHHHhhcc---CCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         153 VVEF-NHETAQKIFGG---EIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       153 v~~~-~~~~~~~~~~~---~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      +.++ +.+++...+..   .-++.++.|...+.+........+.+++++|. ++.|+.+|..
T Consensus         6 v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~v~~~~v~~~   66 (113)
T 1ti3_A            6 VIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-NVTFLKVDVD   66 (113)
T ss_dssp             EEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-SEEEEEEETT
T ss_pred             eeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC-CcEEEEEEcc
Confidence            4555 45666666553   11344556888777788888999999999997 6888877754

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=86.56  E-value=1.3  Score=28.40  Aligned_cols=41  Identities=17%  Similarity=0.149  Sum_probs=33.6

Q ss_pred             ceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         171 SHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       171 ~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      +.++.|...+.+........++++++++.+++.++.+|...
T Consensus         4 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~   44 (85)
T 1fo5_A            4 VKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVME   44 (85)
T ss_dssp             EEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSS
T ss_pred             eEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCC
Confidence            34667888888888899999999999999888888777543

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=86.38  E-value=1.5  Score=31.60  Aligned_cols=61  Identities=5%  Similarity=-0.035  Sum_probs=44.3

Q ss_pred             CCCceeeeCcchHHHhhccC-C-cceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         149 SLPLVVEFNHETAQKIFGGE-I-KSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       149 ~~P~v~~~~~~~~~~~~~~~-~-~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      .+..+.+++.+++....... . ++.++.|+..++..+..+...|.++|++|. ++.|+.+|..
T Consensus         8 ~~g~v~~i~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~-~v~~~~vd~~   70 (135)
T 2dbc_A            8 KFGELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP-ETKFVKAIVN   70 (135)
T ss_dssp             CCCSCEECCHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS-SEEEEEECCS
T ss_pred             CCCceEEcCHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC-CcEEEEEEhh
Confidence            45567788887877655432 1 234555878888888899999999999995 5888887754

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=86.02  E-value=1.2  Score=33.23  Aligned_cols=57  Identities=5%  Similarity=-0.019  Sum_probs=39.8

Q ss_pred             ceeeeCcchHHHhhccCCcceEEEEEeCC--ccchhhhhHHHHHHHHhccCc-eEEEEcCC
Q psy7942         152 LVVEFNHETAQKIFGGEIKSHLLVFFSKA--AGHYESHFEPVQTVAKDFREK-EEQDEDDD  209 (216)
Q Consensus       152 ~v~~~~~~~~~~~~~~~~~~~lllf~~~~--~~~~~~~~~~l~~vA~~~r~~-~~f~~~d~  209 (216)
                      -+.+++.+++.....++ .+.++.|....  ......+...|.++|++|.++ +.|+.+|.
T Consensus        18 g~~~~t~~~F~~~v~~~-~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdv   77 (140)
T 2qgv_A           18 GWTPVSESRLDDWLTQA-PDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADL   77 (140)
T ss_dssp             TCEECCHHHHHHHHHTC-SSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCH
T ss_pred             CCccCCHHHHHHHHhCC-CCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEEC
Confidence            44588888887766543 23333344333  445567889999999999999 99988773

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=85.81  E-value=1.6  Score=29.86  Aligned_cols=57  Identities=14%  Similarity=0.060  Sum_probs=41.4

Q ss_pred             ceeeeC-cchHHHhhcc----CCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         152 LVVEFN-HETAQKIFGG----EIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       152 ~v~~~~-~~~~~~~~~~----~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      .+.+++ .+++...+..    + ++.++.|...+++........+.+++++|. ++.|+.+|..
T Consensus         7 ~v~~i~~~~~~~~~~~~~~~~~-~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~v~~~   68 (118)
T 2vm1_A            7 AVIACHTKQEFDTHMANGKDTG-KLVIIDFTASWCGPCRVIAPVFAEYAKKFP-GAIFLKVDVD   68 (118)
T ss_dssp             CEEECCSHHHHHHHHHHHHHHT-CCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETT
T ss_pred             ceEEecCHHHHHHHHHhcccCC-CEEEEEEECCCCHhHHHHhHHHHHHHHHCC-CcEEEEEEcc
Confidence            456664 5666666553    3 345666888888888889999999999997 6777777654

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=85.52  E-value=3.9  Score=28.97  Aligned_cols=78  Identities=15%  Similarity=0.124  Sum_probs=45.6

Q ss_pred             CCCeEEEEEecCCCh---hHHHHHHHHHhhCC---CceEE-e-cchhhHHHHhhhhccccceeee---cccHHHHHhcCC
Q psy7942          45 DSKVVVAGLFKDASS---ELAKTFNEIASKVD---DLVFD-A-SSELAKTFNEIASKVDDLVFVT---STNADILAEYSV  113 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~---~~~F~-~-~~~~~~~~~~~~~~~~~~~~~~---t~~~~v~~~~~v  113 (216)
                      .+++++|.|+.+||.   ...+.+.++++++.   ++.+. + ++...+.+.+.+.+..-..+-.   ..+..+++.|++
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  106 (144)
T 1o73_A           27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGV  106 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHTC
T ss_pred             CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcCC
Confidence            467899999999985   44567777777663   34332 1 2222334444443332100000   113568899999


Q ss_pred             CC-CeEEEEe
Q psy7942         114 DD-DTVAIFK  122 (216)
Q Consensus       114 ~~-p~i~~~~  122 (216)
                      .. |+++++.
T Consensus       107 ~~~Pt~~lid  116 (144)
T 1o73_A          107 ESIPTLITIN  116 (144)
T ss_dssp             CSSSEEEEEE
T ss_pred             CCCCEEEEEE
Confidence            76 9999998

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=85.10  E-value=2.1  Score=30.15  Aligned_cols=59  Identities=14%  Similarity=-0.013  Sum_probs=41.7

Q ss_pred             Cceeee-CcchHHHhhcc---CCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         151 PLVVEF-NHETAQKIFGG---EIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       151 P~v~~~-~~~~~~~~~~~---~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      ..+.++ +.+++...+..   .-++.++.|...+.+........|.+++++|. ++.|+.+|..
T Consensus        16 ~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-~v~~~~vd~d   78 (124)
T 1xfl_A           16 GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-NVLFLKVDTD   78 (124)
T ss_dssp             SCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-SEEEEEEETT
T ss_pred             CcEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-CcEEEEEECc
Confidence            345666 44566655543   11345666888888888889999999999997 6888887754

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=84.49  E-value=0.9  Score=33.56  Aligned_cols=56  Identities=7%  Similarity=0.012  Sum_probs=31.3

Q ss_pred             ceeeeCcchHHHhhccCCcceEEEEEeCC--ccchhhhhHHHHHHHHhccCceE--EEEcCC
Q psy7942         152 LVVEFNHETAQKIFGGEIKSHLLVFFSKA--AGHYESHFEPVQTVAKDFREKEE--QDEDDD  209 (216)
Q Consensus       152 ~v~~~~~~~~~~~~~~~~~~~lllf~~~~--~~~~~~~~~~l~~vA~~~r~~~~--f~~~d~  209 (216)
                      -+..++.+++....... ...++.|....  .+........|.++|++| +++.  |+.+|.
T Consensus        18 ~~~~l~~~~f~~~i~~~-~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~v~~~~~~Vd~   77 (142)
T 2es7_A           18 GWQPVEASTVDDWIKRV-GDGVILLSSDPRRTPEVSDNPVMIAELLREF-PQFDWQVAVADL   77 (142)
T ss_dssp             TCEECCCC--------C-CSEEEEECCCSCC----CCHHHHHHHHHHTC-TTSCCEEEEECH
T ss_pred             cCcccccccHHHHHHhC-CCEEEEEECCCCCCccHHHHHHHHHHHHHHh-cccceeEEEEEC
Confidence            56788888888777654 23344454322  345677889999999999 8888  887764

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=84.43  E-value=1.4  Score=31.55  Aligned_cols=53  Identities=13%  Similarity=0.158  Sum_probs=40.2

Q ss_pred             ceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCC
Q psy7942         152 LVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDD  209 (216)
Q Consensus       152 ~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~  209 (216)
                      .+.+++.+++......   +.++.|...+++.+......+.+++++++  +.|+.+|.
T Consensus        17 ~v~~l~~~~~~~~~~~---~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--v~~~~vd~   69 (135)
T 3emx_A           17 RLIYITPEEFRQLLQG---DAILAVYSKTCPHCHRDWPQLIQASKEVD--VPIVMFIW   69 (135)
T ss_dssp             EEEECCHHHHHHHHTS---SEEEEEEETTCHHHHHHHHHHHHHHTTCC--SCEEEEEE
T ss_pred             ceeecCHHHHHHHhCC---cEEEEEECCcCHhhhHhChhHHHHHHHCC--CEEEEEEC
Confidence            4567777777776654   44666888888888888999999999987  66666665

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=84.19  E-value=6.7  Score=28.64  Aligned_cols=101  Identities=19%  Similarity=0.189  Sum_probs=56.2

Q ss_pred             CCe-EEEEEe-cCCChh---HHHHHHHHHhhC--CCceE-EecchhhHHHHhhhhccccc-eeeecccHHHHHhcCCCC-
Q psy7942          46 SKV-VVAGLF-KDASSE---LAKTFNEIASKV--DDLVF-DASSELAKTFNEIASKVDDL-VFVTSTNADILAEYSVDD-  115 (216)
Q Consensus        46 ~~v-~~V~f~-~~~~~~---~~~~f~~~A~~~--~~~~F-~~~~~~~~~~~~~~~~~~~~-~~~~t~~~~v~~~~~v~~-  115 (216)
                      .+. ++|.|+ ..||..   ..+.+.+++.++  ..+.+ +++-.....+.+.+.+.+-- -.+...+.++++.|++.+ 
T Consensus        28 gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  107 (161)
T 3drn_A           28 GKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPDKKIRELYGAKGF  107 (161)
T ss_dssp             TTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTTSHHHHHTTCCCS
T ss_pred             CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHHHHcCCCCc
Confidence            444 778888 888854   455666666666  23433 33334444555555544321 222334567899999864 


Q ss_pred             ----CeEEEEecCCCCcccccCCCC---CHHHHHHHHh
Q psy7942         116 ----DTVAIFKKFDEGRVNYEGPAS---DEAALRKFLS  146 (216)
Q Consensus       116 ----p~i~~~~~~de~~~~y~G~~~---~~~~l~~fi~  146 (216)
                          |+++++.+...-...|.|...   +.+.+.+.|+
T Consensus       108 ~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~il~~l~  145 (161)
T 3drn_A          108 ILPARITFVIDKKGIIRHIYNSQMNPANHVNEALKALK  145 (161)
T ss_dssp             SSCCCEEEEECTTSBEEEEEECSSCTTHHHHHHHHHHH
T ss_pred             CcccceEEEECCCCEEEEEEecCCCCCcCHHHHHHHHH
Confidence                988888652222234566331   2344444444

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=84.16  E-value=1.8  Score=31.77  Aligned_cols=59  Identities=12%  Similarity=0.107  Sum_probs=43.4

Q ss_pred             CCceeeeC-cchHHHhhcc--CCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         150 LPLVVEFN-HETAQKIFGG--EIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       150 ~P~v~~~~-~~~~~~~~~~--~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      ...+.+++ .+++..+...  + ++.++.|...+++.+......+.++++++. ++.|+.+|..
T Consensus        11 ~~~v~~l~~~~~~~~~~~~~~~-~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~~   72 (153)
T 2wz9_A           11 VAAVEEVGSAGQFEELLRLKAK-SLLVVHFWAPWAPQCAQMNEVMAELAKELP-QVSFVKLEAE   72 (153)
T ss_dssp             -CCSEEECSHHHHHHHHHHTTT-SCEEEEEECTTCHHHHHHHHHHHHHHHHCT-TSEEEEEETT
T ss_pred             cCCeEEcCCHHHHHHHHHhcCC-CeEEEEEECCCCHhHHHHHHHHHHHHHHcC-CeEEEEEECC
Confidence            34566776 4677776665  4 355666888888888899999999999984 6888887754

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=84.14  E-value=2.2  Score=31.10  Aligned_cols=53  Identities=9%  Similarity=-0.031  Sum_probs=39.0

Q ss_pred             cchHHH-hhc-cCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         158 HETAQK-IFG-GEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       158 ~~~~~~-~~~-~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      .+++.. +.. .+ ++.++.|...+.+........+.++++++.+++.|+.+|...
T Consensus        11 ~~~~~~~v~~~~~-k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~   65 (142)
T 1qgv_A           11 GWQVDQAILSEED-RVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITE   65 (142)
T ss_dssp             HHHHHHHHHTCSS-SEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTT
T ss_pred             HHHHHHHHHhcCC-CEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEcccc
Confidence            455554 333 23 344556888888888999999999999998888888877543

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=83.34  E-value=2.2  Score=32.56  Aligned_cols=57  Identities=14%  Similarity=-0.037  Sum_probs=41.0

Q ss_pred             eeeeCc-chHHHhhc--cCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         153 VVEFNH-ETAQKIFG--GEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       153 v~~~~~-~~~~~~~~--~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      +..++. +++.....  ++ ++.|+-|...+++....+...|.++|++|.+++.|+.+|.-
T Consensus        23 v~~l~t~~~f~~~v~~~~~-k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVD   82 (160)
T 2av4_A           23 LQHLNSGWAVDQAIVNEDE-RLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDIT   82 (160)
T ss_dssp             CEECCSHHHHHHHHHHCSS-SEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETT
T ss_pred             hhccCCHHHHHHHHHhcCC-CEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECC
Confidence            556664 56654432  33 33344488888888899999999999999998888777654

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=82.44  E-value=1.9  Score=29.52  Aligned_cols=53  Identities=9%  Similarity=0.070  Sum_probs=38.1

Q ss_pred             eeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCC
Q psy7942         154 VEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDD  209 (216)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~  209 (216)
                      ..++.+++ .....+ ++.++.|...+.+........+.++++++. ++.|+.+|.
T Consensus         6 ~~~~~~~f-~~~~~~-~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-~v~~~~vd~   58 (110)
T 2l6c_A            6 DITTEAGM-AHFEGL-SDAIVFFHKNLCPHCKNMEKVLDKFGARAP-QVAISSVDS   58 (110)
T ss_dssp             BCGGGCSH-HHHTTC-SEEEEEEECSSCSTHHHHHHHHHHHHTTCT-TSCEEEEEG
T ss_pred             ecCCHHHH-HHHHcC-CCEEEEEECCCCHhHHHHHHHHHHHHHHCC-CcEEEEEcC
Confidence            34566777 444444 345666888888888999999999999986 577766654

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=81.92  E-value=9.1  Score=25.97  Aligned_cols=77  Identities=16%  Similarity=0.173  Sum_probs=44.6

Q ss_pred             CCeEEEEEecCCChhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeec--ccHHHHHhcCCCCCeEEEEe
Q psy7942          46 SKVVVAGLFKDASSELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTS--TNADILAEYSVDDDTVAIFK  122 (216)
Q Consensus        46 ~~v~~V~f~~~~~~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t--~~~~v~~~~~v~~p~i~~~~  122 (216)
                      ....++.|+.+||...... ..+..++ ..+.|.              .+|     ..  .+++++++|+...|++  +.
T Consensus        15 ~~~~v~~f~~~~C~~C~~~-~~~L~~l~~~i~~~--------------~vd-----i~~~~~~el~~~~g~~vP~l--~~   72 (100)
T 1wjk_A           15 ALPVLTLFTKAPCPLCDEA-KEVLQPYKDRFILQ--------------EVD-----ITLPENSTWYERYKFDIPVF--HL   72 (100)
T ss_dssp             CCCEEEEEECSSCHHHHHH-HHHTSTTSSSSEEE--------------EEE-----TTSSTTHHHHHHSSSSCSEE--EE
T ss_pred             CCCEEEEEeCCCCcchHHH-HHHHHHhhhCCeEE--------------EEE-----CCCcchHHHHHHHCCCCCEE--EE
Confidence            4456777888988533221 1111222 346676              333     33  4578889999224976  34


Q ss_pred             cCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         123 KFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       123 ~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      .  +... .-|.+ +.+.|.+||...
T Consensus        73 ~--g~~~-~~~g~-~~~~l~~~l~~~   94 (100)
T 1wjk_A           73 N--GQFL-MMHRV-NTSKLEKQLRKL   94 (100)
T ss_dssp             S--SSEE-EESSC-CHHHHHHHHHSS
T ss_pred             C--CEEE-EecCC-CHHHHHHHHHHH
Confidence            3  2222 34557 889999999764

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=81.83  E-value=2.1  Score=31.53  Aligned_cols=53  Identities=11%  Similarity=0.022  Sum_probs=39.8

Q ss_pred             CcchHHHhhc--cCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         157 NHETAQKIFG--GEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       157 ~~~~~~~~~~--~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      +.+++.....  .+ ++.++.|..++++.+......|.+++++|.+++.|+.+|..
T Consensus        10 ~~~~~~~~i~~~~~-k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d   64 (149)
T 3gix_A           10 SKKEVDQAIKSTAE-KVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVD   64 (149)
T ss_dssp             SHHHHHHHHHHCCS-SEEEEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETT
T ss_pred             CHHHHHHHHHhcCC-CEEEEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECC
Confidence            3456665543  23 34455688888888899999999999999998888887753

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=81.68  E-value=2.8  Score=33.17  Aligned_cols=59  Identities=8%  Similarity=0.092  Sum_probs=43.7

Q ss_pred             CCceeee-CcchHHHhhccCC--cceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCC
Q psy7942         150 LPLVVEF-NHETAQKIFGGEI--KSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDD  209 (216)
Q Consensus       150 ~P~v~~~-~~~~~~~~~~~~~--~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~  209 (216)
                      +..|.++ +.+++.......-  .+.++.|+..+++.+..+...|.++|++|. .+.|+.+|.
T Consensus        98 ~g~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~-~v~f~~vd~  159 (217)
T 2trc_P           98 YGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-MVKFCKIRA  159 (217)
T ss_dssp             CCSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-TSEEEEEEH
T ss_pred             CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCC-CeEEEEEEC
Confidence            4557788 7778877664321  234555888888889999999999999995 788877764

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=81.43  E-value=10  Score=25.77  Aligned_cols=58  Identities=10%  Similarity=0.113  Sum_probs=32.4

Q ss_pred             HHHHHhHhCCCeEEEEEecCCChhH---HHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeeccc-----HHHH
Q psy7942          37 DEIKAFIADSKVVVAGLFKDASSEL---AKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTN-----ADIL  108 (216)
Q Consensus        37 ~~~~~~~~~~~v~~V~f~~~~~~~~---~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~-----~~v~  108 (216)
                      +.+++.++.+ .+++ |+.+||...   .+.+.+++   ..+.+.              .++     ...+     ..++
T Consensus        11 ~~~~~~~~~~-~vv~-f~a~~C~~C~~~~~~l~~~~---~~~~~v--------------~v~-----~~~~~~~~~~~l~   66 (116)
T 2e7p_A           11 KKAKELASSA-PVVV-FSKTYCGYCNRVKQLLTQVG---ASYKVV--------------ELD-----ELSDGSQLQSALA   66 (116)
T ss_dssp             HHHHHHHTSS-SEEE-EECTTCHHHHHHHHHHHHHT---CCCEEE--------------EGG-----GSTTHHHHHHHHH
T ss_pred             HHHHHHHcCC-CEEE-EECCCChhHHHHHHHHHHcC---CCeEEE--------------Ecc-----CCCChHHHHHHHH
Confidence            3445566554 4555 889998544   33444433   234444              222     2222     3578


Q ss_pred             HhcCCCC-CeE
Q psy7942         109 AEYSVDD-DTV  118 (216)
Q Consensus       109 ~~~~v~~-p~i  118 (216)
                      +.+++.. |++
T Consensus        67 ~~~~v~~~Pt~   77 (116)
T 2e7p_A           67 HWTGRGTVPNV   77 (116)
T ss_dssp             HHHSCCSSCEE
T ss_pred             HHhCCCCcCEE
Confidence            8899975 999

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=81.29  E-value=1.6  Score=28.00  Aligned_cols=40  Identities=23%  Similarity=0.221  Sum_probs=33.0

Q ss_pred             eEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         172 HLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       172 ~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      .++.|...+.+........++++++++.+++.++.+|...
T Consensus         4 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~   43 (85)
T 1nho_A            4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMV   43 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTT
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCC
Confidence            4667888888888889999999999999888888887643

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=80.99  E-value=4  Score=33.10  Aligned_cols=59  Identities=8%  Similarity=0.090  Sum_probs=44.0

Q ss_pred             CCceeee-CcchHHHhhcc--CCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCC
Q psy7942         150 LPLVVEF-NHETAQKIFGG--EIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDD  209 (216)
Q Consensus       150 ~P~v~~~-~~~~~~~~~~~--~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~  209 (216)
                      +..|.++ +.+++......  .-.+.++.|+..+++.+......|.++|++|.+ +.|+.+|.
T Consensus       111 ~G~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~-v~f~kVd~  172 (245)
T 1a0r_P          111 YGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPM-VKFCKIKA  172 (245)
T ss_dssp             CCSEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTT-SEEEEEEH
T ss_pred             CCeEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCC-CEEEEEeC
Confidence            4467788 67788776642  113445558888888899999999999999985 88887764

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=80.09  E-value=3.1  Score=28.69  Aligned_cols=56  Identities=11%  Similarity=0.100  Sum_probs=38.2

Q ss_pred             eeeC-cchHHHhhcc-CCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         154 VEFN-HETAQKIFGG-EIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       154 ~~~~-~~~~~~~~~~-~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      .+++ .+++...+.. +-++.++-|..++.+........+.++|+.+.+ +.|+.+|..
T Consensus         3 ~~i~~~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~vd~d   60 (105)
T 3zzx_A            3 YQVKDQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSD-VVFLKVDVD   60 (105)
T ss_dssp             EECCSHHHHHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-EEEEEEETT
T ss_pred             EEeCCHHHHHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccCC-eEEEEEecc
Confidence            4454 3566665543 213334448888888889999999999999874 667776643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	216
d1bjxa_	110	c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu	5e-21
d1a8ya2	102	c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Orycto	6e-11
d2djka1	133	c.47.1.2 (A:1-133) Protein disulfide isomerase, PD	1e-06

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (202), Expect = 5e-21
 Identities = 45/132 (34%), Positives = 65/132 (49%), Gaps = 23/132 (17%)

Query: 30  AKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAKTFNE 89
           A         ++ +  S+V V G FKD  S+ AK F + A  +DD+ F            
Sbjct: 2   ATTLPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPF------------ 49

Query: 90  IASKVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQS 149
                     +TS N+D+ ++Y +D D V +FKKFDEGR N+EG    +  L  F+    
Sbjct: 50  ---------GITS-NSDVFSKYQLDKDGVVLFKKFDEGRNNFEGEV-TKENLLDFIKHNQ 98

Query: 150 LPLVVEFNHETA 161
           LPLV+EF  +TA
Sbjct: 99  LPLVIEFTEQTA 110

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 102

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 55.2 bits (133), Expect = 6e-11
 Identities = 18/113 (15%), Positives = 41/113 (36%), Gaps = 22/113 (19%)

Query: 34  TSVDEIKAFI-ADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAKTFNEIAS 92
               E++AF   + ++ + G FK+  SE  K F E A +                     
Sbjct: 5   EGERELQAFENIEDEIKLIGYFKNKDSEHYKAFKEAAEEFHP------------------ 46

Query: 93  KVDDLVFVTSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFL 145
               + F  + ++ +  + ++  + +  ++ F E  V      + E  +  F+
Sbjct: 47  ---YIPFFATFDSKVAKKLTLKLNEIDFYEAFMEEPVTIPDKPNSEEEIVNFV 96

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score = 44.1 bits (104), Expect = 1e-06
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 149 SLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREK 201
             PL+ E   ET        I   L   F++ A   +   + ++ +A+  R  
Sbjct: 4   GSPLIGEIGPETYSDYMSAGIP--LAYIFAETAEERKELSDKLKPIAEAQRGV 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	216
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	99.87
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.79
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.28
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.13
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.13
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.05
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.01
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	98.99
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	98.95
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	98.93
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	98.92
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	98.92
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	98.91
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	98.89
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	98.83
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	98.83
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	98.81
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	98.81
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	98.8
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	98.74
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	98.74
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	98.71
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	98.66
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	98.56
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	98.47
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	98.42
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	98.27
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	98.26
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	98.25
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	98.16
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	98.14
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	98.01
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	97.92
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	97.85
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	97.79
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	97.59
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	97.5
d2b5ea2	98	Protein disulfide isomerase, PDI {Baker's yeast (S	97.22
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	97.15
d1a8ya3	119	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	97.11
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	96.1
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	96.06
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	95.78
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	95.63
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	95.44
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	95.39
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	94.88
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	94.63
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	94.55
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	94.52
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	94.38
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	93.57
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	93.43
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	93.32
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	93.29
d1wjka_	100	Thioredoxin-like structure containing protein C330	92.96
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	91.34
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	91.28
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	91.11
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	90.94
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	90.64
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	90.52
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	89.57
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	89.57
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	88.04
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	87.86
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	86.21
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	86.05
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	84.95
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	84.23
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	83.95
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	83.74
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	81.73
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	80.75

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.8e-22  Score=146.29  Aligned_cols=109  Identities=39%  Similarity=0.711  Sum_probs=103.7

Q ss_pred             ceeecCHHHHHHhHhCCCeEEEEEecCCChhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecccHHHHH
Q psy7942          30 AKEFTSVDEIKAFIADSKVVVAGLFKDASSELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILA  109 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~  109 (216)
                      +..|.+.+++++|++++++++||||++.++..+++|.++|+.++++.|+                      +|.++++++
T Consensus         2 a~~l~~~~~~e~f~~~~~v~VVGfF~~~~~~~~~~F~~~A~~~~d~~F~----------------------~t~~~~v~~   59 (110)
T d1bjxa_           2 ATTLPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAIDDIPFG----------------------ITSNSDVFS   59 (110)
T ss_dssp             EEECCSHHHHHHHHHHSSEEEEEECTTTTSHHHHHHHHHHHHCSSSCEE----------------------EECCSHHHH
T ss_pred             ceEcCCHHHHHHHhccCCeEEEEEEcCCCchHHHHHHHHHHhCcCceEE----------------------EECCHHHHH
Confidence            5678999999999999999999999998999999999999999889999                      999999999


Q ss_pred             hcCCCCCeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCCceeeeCcchH
Q psy7942         110 EYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLPLVVEFNHETA  161 (216)
Q Consensus       110 ~~~v~~p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P~v~~~~~~~~  161 (216)
                      +++++.|+|++||++++.+..|.|++ +.+.|.+||..+++|+|+++|.+|+
T Consensus        60 ~~~v~~~~Ivl~k~~de~~~~~~~~~-~~~~l~~fi~~~~~PlV~e~~~e~A  110 (110)
T d1bjxa_          60 KYQLDKDGVVLFKKFDEGRNNFEGEV-TKENLLDFIKHNQLPLVIEFTEQTA  110 (110)
T ss_dssp             HTTCSSCEEEEEESSSSSBCCCCSCC-CHHHHHHHHHHHSSCCCSSCCCTTC
T ss_pred             HcCCCCCeEEEeccCCccccccCCCC-CHHHHHHHHHHcCcCcEEecCCCCC
Confidence            99999999999999999888999999 9999999999999999999999874

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.79  E-value=3.8e-19  Score=127.56  Aligned_cols=98  Identities=18%  Similarity=0.331  Sum_probs=91.3

Q ss_pred             ceeecCHHHHHHhHh-CCCeEEEEEecCCChhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHH
Q psy7942          30 AKEFTSVDEIKAFIA-DSKVVVAGLFKDASSELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADI  107 (216)
Q Consensus        30 v~~l~s~~~~~~~~~-~~~v~~V~f~~~~~~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v  107 (216)
                      |..|+|.++++.|++ ++++++||||++.+++.+++|.++|..+ +++.||                      +|+++++
T Consensus         1 v~~i~~~~e~~~F~~~~d~v~VvGfF~~~~~~~~~~F~~~A~~~rd~~~F~----------------------~t~d~~v   58 (102)
T d1a8ya2           1 VELIEGERELQAFENIEDEIKLIGYFKNKDSEHYKAFKEAAEEFHPYIPFF----------------------ATFDSKV   58 (102)
T ss_dssp             EEEECSHHHHHHHTTCCSSCEEEEECSSTTCHHHHHHHHHHHHHTTTSCEE----------------------EECCHHH
T ss_pred             CeeecCHHHHHHHhccCCCEEEEEEECCCCcHHHHHHHHHHHHcCCCceEE----------------------EECCHHH
Confidence            467899999999998 6789999999988899999999999998 899999                      9999999


Q ss_pred             HHhcCCCCCeEEEEecCCCCcccccCC-CCCHHHHHHHHhhcCC
Q psy7942         108 LAEYSVDDDTVAIFKKFDEGRVNYEGP-ASDEAALRKFLSTQSL  150 (216)
Q Consensus       108 ~~~~~v~~p~i~~~~~~de~~~~y~G~-~~~~~~l~~fi~~~~~  150 (216)
                      +++++++.|+|++||++++.+..|+|. + +.++|.+||+.|+.
T Consensus        59 a~~~~v~~~~vvlfr~fde~~~~~~~~~~-t~~~i~~Fi~~n~r  101 (102)
T d1a8ya2          59 AKKLTLKLNEIDFYEAFMEEPVTIPDKPN-SEEEIVNFVEEHRR  101 (102)
T ss_dssp             HHHHCCCTTCEEEECTTCSSEEECSSSSC-CHHHHHHHHHHTCC
T ss_pred             HHHcCCCCCCEEEeeecCCCceecCCCCC-CHHHHHHHHHHhcc
Confidence            999999999999999999999999995 7 99999999999863

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.28  E-value=2.7e-11  Score=87.91  Aligned_cols=102  Identities=24%  Similarity=0.488  Sum_probs=85.3

Q ss_pred             CceeecCHHHHHHhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhC--CCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          29 PAKEFTSVDEIKAFIADSKVVVAGLFKDAS---SELAKTFNEIASKV--DDLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~--~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      .|..|++ +++++++++++.++|.||.+||   ....+.|.++|..+  ..+.|+              .||     +..
T Consensus        11 ~v~~lt~-~~f~~~i~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~--------------~vd-----~~~   70 (119)
T d2b5ea4          11 AVVKLAT-DSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLA--------------QID-----CTE   70 (119)
T ss_dssp             SCEECCT-TTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEE--------------EEE-----TTT
T ss_pred             ccEEcCH-HHHHHHHhcCCeEEEEEECCccCcccccchhhhhhhhhhcccceeee--------------eee-----ccc
Confidence            4667754 7899999999999999999998   45677999999887  468888              666     778


Q ss_pred             cHHHHHhcCCCC-CeEEEEecCCC-CcccccCCCCCHHHHHHHHhhcCCC
Q psy7942         104 NADILAEYSVDD-DTVAIFKKFDE-GRVNYEGPASDEAALRKFLSTQSLP  151 (216)
Q Consensus       104 ~~~v~~~~~v~~-p~i~~~~~~de-~~~~y~G~~~~~~~l~~fi~~~~~P  151 (216)
                      +++++.+|++.. |+|++|++++. ....|.|+. +.++|.+||.+++-|
T Consensus        71 ~~~l~~~~~v~~~Pti~~f~~g~~~~~~~y~g~~-~~~~l~~fi~k~~~P  119 (119)
T d2b5ea4          71 NQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPR-TAEAIVQFMIKQSQP  119 (119)
T ss_dssp             CHHHHHHTTCCSSSEEEEEETTCTTCEEECCSCC-SHHHHHHHHHHHTSC
T ss_pred             hHHHHHHhccccCCeEEEEECCEEeeeEEecCCC-CHHHHHHHHHHhhCC
Confidence            899999999986 99999987543 345799999 999999999988765

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.13  E-value=2.6e-10  Score=80.43  Aligned_cols=98  Identities=20%  Similarity=0.367  Sum_probs=80.7

Q ss_pred             ceeecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecccHH
Q psy7942          30 AKEFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNAD  106 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~  106 (216)
                      ++.++|.+++++++++++.++|.|+.+||+   ...+.+.+++..+++..|+              .++     ...+++
T Consensus         2 v~~i~s~~~f~~~i~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~--------------~vd-----~d~~~~   62 (103)
T d1syra_           2 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFI--------------KVD-----VDEVSE   62 (103)
T ss_dssp             CEEECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEE--------------EEE-----TTTTHH
T ss_pred             cEEeCCHHHHHHHHhCCCcEEEEEeCCcccCcccccccchhhhhcccceEEE--------------eec-----cccCcc
Confidence            467889999999999999999999999984   5567899999999888887              455     667789


Q ss_pred             HHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcC
Q psy7942         107 ILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQS  149 (216)
Q Consensus       107 v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~  149 (216)
                      ++++|++.. |++++|+++. ....|.| . +.+.|.+||.++.
T Consensus        63 ~~~~~~V~~~Pt~i~~k~G~-~v~~~~G-~-~~~~l~~~i~k~a  103 (103)
T d1syra_          63 VTEKENITSMPTFKVYKNGS-SVDTLLG-A-NDSALKQLIEKYA  103 (103)
T ss_dssp             HHHHTTCCSSSEEEEEETTE-EEEEEES-C-CHHHHHHHHHTTC
T ss_pred             eeeeeeeecceEEEEEECCE-EEEEEeC-c-CHHHHHHHHHhhC
Confidence            999999987 9999999632 2446778 4 6789999998763

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.13  E-value=2e-10  Score=83.82  Aligned_cols=96  Identities=16%  Similarity=0.283  Sum_probs=78.1

Q ss_pred             ceeecCHHHHHHhHhCCCeEEEEEecCCChh---------HHHHHHHHHhhC--CCceEEecchhhHHHHhhhhccccce
Q psy7942          30 AKEFTSVDEIKAFIADSKVVVAGLFKDASSE---------LAKTFNEIASKV--DDLVFDASSELAKTFNEIASKVDDLV   98 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~~---------~~~~f~~~A~~~--~~~~F~~~~~~~~~~~~~~~~~~~~~   98 (216)
                      |..|+ .+++++++++++.++|.||.+||+.         ....+..+|+.+  ..+.|+              +||   
T Consensus        13 V~~L~-~~nf~~~l~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a--------------~Vd---   74 (124)
T d1a8ya1          13 VINVN-AKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFG--------------LVD---   74 (124)
T ss_dssp             CEECC-TTTHHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEE--------------EEE---
T ss_pred             cEECC-HHHHHHHHHhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEE--------------EEE---
Confidence            66776 5789999999999999999999841         223455556655  457888              677   


Q ss_pred             eeecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942          99 FVTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus        99 ~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                        ++.++++++++++.+ |||++|++  +....|+|.+ +.++|.+||.+.
T Consensus        75 --~~~~~~l~~~~~I~~yPTi~~f~~--g~~~~y~G~r-~~~~l~~fi~~~  120 (124)
T d1a8ya1          75 --SEKDAAVAKKLGLTEEDSIYVFKE--DEVIEYDGEF-SADTLVEFLLDV  120 (124)
T ss_dssp             --TTTSHHHHHTTTCCSTTCEEEEES--SSEEECCSCC-SHHHHHHHHHHH
T ss_pred             --eecccchhhccccccCCcEEEecc--CccEEeeCCC-CHHHHHHHHHHh
Confidence              888999999999997 99999996  4578899999 999999999865

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=3.6e-10  Score=81.56  Aligned_cols=103  Identities=17%  Similarity=0.333  Sum_probs=83.1

Q ss_pred             CceeecCHHHHHHhHhCCCeEEEEEecCCC---hhHHHHHHHHHhhC----CCceEEecchhhHHHHhhhhccccceeee
Q psy7942          29 PAKEFTSVDEIKAFIADSKVVVAGLFKDAS---SELAKTFNEIASKV----DDLVFDASSELAKTFNEIASKVDDLVFVT  101 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~----~~~~F~~~~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      .|..|+ .+++++++++++.++|.||.+||   ..+.+.|.+++..+    ..+.|+              .||     +
T Consensus         8 ~V~~l~-~~~f~~~l~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~--------------~vd-----~   67 (120)
T d1meka_           8 HVLVLR-KSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLA--------------KVD-----A   67 (120)
T ss_dssp             TEEECC-TTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCE--------------EEE-----T
T ss_pred             CeEEcC-HHHHHHHHhcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeee--------------ccc-----c
Confidence            355554 58899999999999999999997   46677898998876    246676              455     6


Q ss_pred             cccHHHHHhcCCCC-CeEEEEecCCC-CcccccCCCCCHHHHHHHHhhcCCCc
Q psy7942         102 STNADILAEYSVDD-DTVAIFKKFDE-GRVNYEGPASDEAALRKFLSTQSLPL  152 (216)
Q Consensus       102 t~~~~v~~~~~v~~-p~i~~~~~~de-~~~~y~G~~~~~~~l~~fi~~~~~P~  152 (216)
                      ..++++++++++.+ |++++|++++. ....|.|.. +.+.|.+||+++.-|.
T Consensus        68 ~~~~~l~~~~~i~~~Pt~~~~~~G~~~~~~~~~g~~-~~~~l~~fi~~~~~p~  119 (120)
T d1meka_          68 TEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGR-EADDIVNWLKKRTGPA  119 (120)
T ss_dssp             TTCCSSHHHHTCCSSSEEEEEESSCSSSCEECCCCS-SHHHHHHHHHTTSCCC
T ss_pred             ccchhHHHHhCCccCCeEEEEECCeEeeeEEecCCC-CHHHHHHHHHHhhCCC
Confidence            66788999999987 99999997543 346789999 9999999999998773

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.01  E-value=1.4e-09  Score=78.17  Aligned_cols=99  Identities=20%  Similarity=0.266  Sum_probs=79.0

Q ss_pred             hCCCceeecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeec
Q psy7942          26 TGPPAKEFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTS  102 (216)
Q Consensus        26 ~~~~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t  102 (216)
                      ..|.+..+.|.++++++++++++++|.|+++||+   ...+.|.++|.+++++.|+              .+|     ..
T Consensus         6 ~~p~vi~i~s~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~--------------~vd-----~d   66 (113)
T d1r26a_           6 RYPSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFA--------------KVD-----AD   66 (113)
T ss_dssp             CCSCCEEECCHHHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEE--------------EEE-----TT
T ss_pred             CCCceEEeCCHHHHHHHHcCCCeEEEEEECCCCccchhhceecccccccccccccc--------------ccc-----cc
Confidence            3577889999999999999999999999999984   5567899999999999998              566     66


Q ss_pred             ccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHh
Q psy7942         103 TNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLS  146 (216)
Q Consensus       103 ~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~  146 (216)
                      .+++++++|++.. |++++|+++.. ...+.|.  +.+.+.++|.
T Consensus        67 ~~~~l~~~~~V~~~Pt~~~~~~G~~-v~~~~G~--~~~~l~~~l~  108 (113)
T d1r26a_          67 NNSEIVSKCRVLQLPTFIIARSGKM-LGHVIGA--NPGMLRQKLR  108 (113)
T ss_dssp             TCHHHHHHTTCCSSSEEEEEETTEE-EEEEESS--CHHHHHHHHH
T ss_pred             cchhhHHHccccCCCEEEEEECCEE-EEEEeCC--CHHHHHHHHH
Confidence            7889999999987 99999996322 3355673  4455555544

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=98.99  E-value=9.8e-10  Score=77.49  Aligned_cols=96  Identities=17%  Similarity=0.242  Sum_probs=79.4

Q ss_pred             eeecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHH
Q psy7942          31 KEFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNAD  106 (216)
Q Consensus        31 ~~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~  106 (216)
                      ..|++ +++++.++++++++|.||.+||.   ...+.|.+++..+ +.+.|+              .+|     +..+++
T Consensus         3 i~lt~-~~f~~~i~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~--------------~vd-----~~~~~~   62 (105)
T d1nw2a_           3 MTLTD-ANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVA--------------KLN-----VDENPE   62 (105)
T ss_dssp             EEECT-TTHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEE--------------EEE-----TTTCHH
T ss_pred             EEECH-HHHHHHHhCCCcEEEEEECCCCCCcccccchhhhhhhhcCCceEEE--------------EEE-----CCCCcc
Confidence            45654 78899999999999999999985   5567899999888 678898              566     778899


Q ss_pred             HHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         107 ILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       107 v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ++++|+|.+ |++++|+++. ....+.|.. +.+.|.+||.+.
T Consensus        63 ~~~~~~V~~~Pt~~~~~~G~-~~~~~~G~~-~~~~l~~~i~~~  103 (105)
T d1nw2a_          63 TTSQFGIMSIPTLILFKGGE-PVKQLIGYQ-PKEQLEAQLADV  103 (105)
T ss_dssp             HHHHTTCCBSSEEEEEETTE-EEEEEESCC-CHHHHHHHTTTT
T ss_pred             cHHHCCcceeeEEEEEECCE-EEEEEECCC-CHHHHHHHHHHH
Confidence            999999997 9999999632 345688988 899999999764

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.95  E-value=8.6e-10  Score=80.16  Aligned_cols=105  Identities=22%  Similarity=0.300  Sum_probs=76.2

Q ss_pred             CceeecCHHHHHHhHhCCCeEEEEEecCCCh-hHHHHHHHHHhhC---CCceEEecchhhHHHHhhhhccccceeeeccc
Q psy7942          29 PAKEFTSVDEIKAFIADSKVVVAGLFKDASS-ELAKTFNEIASKV---DDLVFDASSELAKTFNEIASKVDDLVFVTSTN  104 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~-~~~~~f~~~A~~~---~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~  104 (216)
                      .+..|+ .+++++++.+++.++|.|+.+||. ..-+.|.++|..+   .+...+-         --...+|     ++.+
T Consensus         5 ~~v~L~-~~nFd~~i~~~~~~lV~F~~~wc~~~~~~~~~~la~~~~~~~~~~~~~---------V~~~~vd-----~~~n   69 (122)
T d1g7ea_           5 GALPLD-TVTFYKVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAE---------VGISDYG-----DKLN   69 (122)
T ss_dssp             SSCSCS-HHHHHHHGGGSSEEEEEEECSSCCTTTTHHHHHHHHHGGGCSSEEEEE---------EESCCTT-----SCHH
T ss_pred             ceEECC-HHhHHHHHhhCCeEEEEEecCCcCcccCHHHHHHHHHHHHHHHHhhhc---------cceeecc-----cccc
Confidence            456675 589999999999999999999873 3336778888776   2222220         0001334     6678


Q ss_pred             HHHHHhcC--CCC-CeEEEEecCC-CCcccccCCCCCHHHHHHHHhhcC
Q psy7942         105 ADILAEYS--VDD-DTVAIFKKFD-EGRVNYEGPASDEAALRKFLSTQS  149 (216)
Q Consensus       105 ~~v~~~~~--v~~-p~i~~~~~~d-e~~~~y~G~~~~~~~l~~fi~~~~  149 (216)
                      ++++.+++  +.+ |||++|++++ ..+..|+|++ +.++|.+||+++.
T Consensus        70 ~~l~~~~~~~I~~yPTi~~f~~G~~~~~~~y~G~r-t~~~l~~fi~~~~  117 (122)
T d1g7ea_          70 MELSEKYKLDKESYPVFYLFRDGDFENPVPYSGAV-KVGAIQRWLKGQG  117 (122)
T ss_dssp             HHHHHHHTCSSSSCEEEEEEESSCCCCCEEEESCC-CHHHHHHHHHTTS
T ss_pred             HHHHHhhcccccCCCeEEEEecCcccCceecCCCC-CHHHHHHHHHhcc
Confidence            88988876  444 9999999865 3457899999 9999999999985

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=4e-09  Score=74.40  Aligned_cols=96  Identities=21%  Similarity=0.311  Sum_probs=78.1

Q ss_pred             ceeecCHHHHHHhHhC--CCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeeccc
Q psy7942          30 AKEFTSVDEIKAFIAD--SKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTN  104 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~--~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~  104 (216)
                      ++.|.|.++++++++.  +++++|.|+++||+   ...+.|.+++..+++..|+              .+|     ...+
T Consensus         2 v~~i~s~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~--------------~vd-----~d~~   62 (105)
T d2ifqa1           2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFL--------------EVD-----VDDC   62 (105)
T ss_dssp             CEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEE--------------EEE-----TTTC
T ss_pred             eEEcCCHHHHHHHHHhCCCCEEEEEEEcCCccchhhhhhhhhhhccccccceee--------------ecc-----cccC
Confidence            5678899999999864  67899999999984   5567889999999777787              566     7778


Q ss_pred             HHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942         105 ADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       105 ~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                      ++++.+|++.. |++++|+++ +....+.| . +.+.|.+||.+
T Consensus        63 ~~~~~~~~V~~~Pt~~~~~~G-~~v~~~~G-~-~~~~l~~~i~~  103 (105)
T d2ifqa1          63 QDVASECEVKCMPTFQFFKKG-QKVGEFSG-A-NKEKLEATINE  103 (105)
T ss_dssp             HHHHHHTTCCBSSEEEEEETT-EEEEEEES-C-CHHHHHHHHHH
T ss_pred             HhHHHHcCceEEEEEEEEECC-EEEEEEeC-C-CHHHHHHHHHh
Confidence            89999999986 999999963 33456778 4 67889999875

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.9e-09  Score=75.69  Aligned_cols=98  Identities=19%  Similarity=0.275  Sum_probs=80.0

Q ss_pred             CceeecCHHHHHHhHhC--CCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          29 PAKEFTSVDEIKAFIAD--SKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~~~--~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      .|+.+.|.+++++.+..  +++++|.|+++||+   ...+.|.++|..+.++.|.              .+|     ...
T Consensus         2 ~v~~i~s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~~~f~--------------~vd-----~d~   62 (107)
T d1gh2a_           2 GVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFL--------------EVD-----VHQ   62 (107)
T ss_dssp             CEEEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTTSEEE--------------EEE-----TTT
T ss_pred             ceEEcCCHHHHHHHHHhCCCCEEEEEEECCCCCCccccchhhhcccccccccccc--------------ccc-----ccc
Confidence            46788899999998864  77899999999984   5567899999999888888              566     677


Q ss_pred             cHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         104 NADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       104 ~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      +++++++|++.. |++++|+++. ....+.| . +.+.|.++|+++
T Consensus        63 ~~~l~~~~~v~~~Pt~~~~~~G~-~v~~~~G-~-~~~~l~~~i~k~  105 (107)
T d1gh2a_          63 CQGTAATNNISATPTFQFFRNKV-RIDQYQG-A-DAVGLEEKIKQH  105 (107)
T ss_dssp             SHHHHHHTTCCSSSEEEEEETTE-EEEEEES-S-CHHHHHHHHHHH
T ss_pred             chhhhhhcCceeceEEEEEECCE-EEEEEeC-C-CHHHHHHHHHHh
Confidence            899999999987 9999999633 2455778 4 789999999865

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=98.92  E-value=4.1e-09  Score=74.55  Aligned_cols=98  Identities=18%  Similarity=0.227  Sum_probs=78.2

Q ss_pred             CceeecCHHHHHH-hHhCCCeEEEEEecCCC---hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          29 PAKEFTSVDEIKA-FIADSKVVVAGLFKDAS---SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        29 ~v~~l~s~~~~~~-~~~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      .|..|++ ++++. ++++++.++|.|+.+||   ....+.|.+++..+ +.+.|+              .+|     +..
T Consensus         3 ~V~~lt~-~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~--------------~vd-----~d~   62 (108)
T d1thxa_           3 GVITITD-AEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVV--------------KLE-----IDP   62 (108)
T ss_dssp             SEEECCG-GGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEE--------------EEE-----STT
T ss_pred             CceECCH-HHHHHHHHhCCCcEEEEEECCCCCCccccchHHHHHHHhcCCcceec--------------eec-----ccc
Confidence            4677764 67776 55677889999999998   45677899999888 567787              565     677


Q ss_pred             cHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         104 NADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       104 ~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      +++++++|++.. |++++|+++ +....|.|.. +.+.|.+||.++
T Consensus        63 ~~~l~~~~~I~~~Pt~~~~~~g-~~v~~~~G~~-~~~~l~~~i~~~  106 (108)
T d1thxa_          63 NPTTVKKYKVEGVPALRLVKGE-QILDSTEGVI-SKDKLLSFLDTH  106 (108)
T ss_dssp             CHHHHHHTTCCSSSEEEEEETT-EEEEEEESCC-CHHHHHHHHHHH
T ss_pred             cHHHHHHhcccCCCEEEEEECC-EEEEEEeCCC-CHHHHHHHHHHh
Confidence            899999999986 999999852 3345688998 999999999864

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.91  E-value=6.1e-09  Score=75.48  Aligned_cols=106  Identities=13%  Similarity=0.145  Sum_probs=78.6

Q ss_pred             CCceeecCHHHHHHhHhCCCeEEEEEecCCChhH-HHHHHHHHhhC----CCceEEecchhhHHHHhhhhccccceeeec
Q psy7942          28 PPAKEFTSVDEIKAFIADSKVVVAGLFKDASSEL-AKTFNEIASKV----DDLVFDASSELAKTFNEIASKVDDLVFVTS  102 (216)
Q Consensus        28 ~~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~~~~-~~~f~~~A~~~----~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t  102 (216)
                      +.+..|++ +++++++++++.++|.||.+||... .++|.++|+.+    +++.++              +||-...-..
T Consensus         2 ~g~v~L~~-~nFd~~v~~~~~~lV~Fya~wC~~ck~p~f~kla~~~~~~~~~v~ia--------------~Vd~~~~~~~   66 (122)
T d2c0ga2           2 TGCVDLDE-LSFEKTVERFPYSVVKFDIASPYGEKHEAFTAFSKSAHKATKDLLIA--------------TVGVKDYGEL   66 (122)
T ss_dssp             TTCEECCT-TTHHHHHTTSSEEEEEEEESSCCSHHHHHHHHHHHHHHHHCSSEEEE--------------EEEECSSTTC
T ss_pred             CceEEcCh-HhHHHHHhcCCcEEEEEECCCCCcccCHHHHHHHHHHHHhCCCeEEE--------------eccccccccc
Confidence            34667865 6799999999999999999998422 46788887654    567777              4540000012


Q ss_pred             ccHHHHHhcCCC---CCeEEEEecCCCC--cccccCCCCCHHHHHHHHhhcC
Q psy7942         103 TNADILAEYSVD---DDTVAIFKKFDEG--RVNYEGPASDEAALRKFLSTQS  149 (216)
Q Consensus       103 ~~~~v~~~~~v~---~p~i~~~~~~de~--~~~y~G~~~~~~~l~~fi~~~~  149 (216)
                      .+++++.+|++.   .|+|++|++....  ...|.|++ +.++|.+||+++.
T Consensus        67 ~n~~l~~~~~i~~~~~PTi~~f~~g~~~~~~~~~~g~r-t~~~l~~fv~~~~  117 (122)
T d2c0ga2          67 ENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDV-TLDNLKAFVSANT  117 (122)
T ss_dssp             TTHHHHHHTTCCTTSCCEEEEESSSSSSEEECCTTSCC-CHHHHHHHHHHHS
T ss_pred             cCHHHHHHhhcccCCCCcEEEEeCCcccccccccCCCC-CHHHHHHHHHHhc
Confidence            468899999884   4999999975443  34678999 9999999999886

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=98.89  E-value=5.8e-09  Score=74.55  Aligned_cols=100  Identities=18%  Similarity=0.251  Sum_probs=79.2

Q ss_pred             CCCceeecCHHHHHHhHh----CCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccce
Q psy7942          27 GPPAKEFTSVDEIKAFIA----DSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLV   98 (216)
Q Consensus        27 ~~~v~~l~s~~~~~~~~~----~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~   98 (216)
                      |..|..|+|.+++++.+.    ++++++|.|+.+||.   ...+.+.++|..+ +++.|.              .+|   
T Consensus         1 gg~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~--------------~vd---   63 (112)
T d1ep7a_           1 GGSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFL--------------KVD---   63 (112)
T ss_dssp             CCSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEE--------------EEE---
T ss_pred             CCCEEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEE--------------Eee---
Confidence            456788988888876653    578999999999984   5677899999998 568888              455   


Q ss_pred             eeecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942          99 FVTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus        99 ~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                        ...+++++++|++.. |++++|+++ +....+.| . +.+.|.+||.++
T Consensus        64 --~d~~~~l~~~~~v~~~Pt~~~~~~G-~~v~~~~G-~-~~~~l~~~i~k~  109 (112)
T d1ep7a_          64 --VDAVAAVAEAAGITAMPTFHVYKDG-VKADDLVG-A-SQDKLKALVAKH  109 (112)
T ss_dssp             --TTTTHHHHHHHTCCBSSEEEEEETT-EEEEEEES-C-CHHHHHHHHHHH
T ss_pred             --ccccccccccccccCCCEEEEEECC-EEEEEEeC-c-CHHHHHHHHHHH
Confidence              667889999999986 999999963 22445677 4 789999999876

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=8.4e-09  Score=72.81  Aligned_cols=98  Identities=18%  Similarity=0.340  Sum_probs=76.4

Q ss_pred             CceeecCHHHHHH-hHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          29 PAKEFTSVDEIKA-FIADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        29 ~v~~l~s~~~~~~-~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      .+..|++ +++++ +++++++++|.|+++||.   ...+.+.++|..+ .++.|.              .++     ...
T Consensus         3 ~v~~lt~-~~f~~~v~~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~--------------~vd-----~d~   62 (108)
T d2trxa_           3 KIIHLTD-DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVA--------------KLN-----IDQ   62 (108)
T ss_dssp             TEEECCT-TTHHHHTTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEE--------------EEE-----TTT
T ss_pred             CceECCH-HHHHHHHHhCCCcEEEEEECCCCCCccccCcHHHHHHHHhhcceeee--------------ecc-----ccc
Confidence            3566765 67765 567789999999999985   4467888888877 677777              344     556


Q ss_pred             cHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         104 NADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       104 ~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ++.++++|++.. |++++|+++ +....|.|.. +.+.|.+||..+
T Consensus        63 ~~~l~~~~~v~~~PT~~~~~~G-~~v~~~~G~~-~~~~l~~~i~~~  106 (108)
T d2trxa_          63 NPGTAPKYGIRGIPTLLLFKNG-EVAATKVGAL-SKGQLKEFLDAN  106 (108)
T ss_dssp             CTTHHHHTTCCSSSEEEEEETT-EEEEEEESCC-CHHHHHHHHHHH
T ss_pred             hhhHHHHhCCCcEEEEEEEECC-EEEEEEeCCC-CHHHHHHHHHHh
Confidence            788999999987 999999963 3345689998 999999999865

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.83  E-value=9.9e-09  Score=75.90  Aligned_cols=102  Identities=15%  Similarity=0.226  Sum_probs=77.4

Q ss_pred             CCceeecCHHHHHHhHh-CCCeEEEEEecCCC---hhHHHHHHHHHhhC----CCceEEecchhhHHHHhhhhcccccee
Q psy7942          28 PPAKEFTSVDEIKAFIA-DSKVVVAGLFKDAS---SELAKTFNEIASKV----DDLVFDASSELAKTFNEIASKVDDLVF   99 (216)
Q Consensus        28 ~~v~~l~s~~~~~~~~~-~~~v~~V~f~~~~~---~~~~~~f~~~A~~~----~~~~F~~~~~~~~~~~~~~~~~~~~~~   99 (216)
                      +.|..|++ +++++++. .++.++|.||.+||   ....+.|.++|..+    ..+.|+              .      
T Consensus        12 ~~V~~l~~-~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~--------------~------   70 (140)
T d2b5ea1          12 SSVFQLVG-KNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIA--------------K------   70 (140)
T ss_dssp             CSEEEECT-TTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEE--------------E------
T ss_pred             CCcEEecC-cCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEE--------------e------
Confidence            45777864 78888774 57788999999998   45677899999876    245555              1      


Q ss_pred             eecccHHHHHhcCCCC-CeEEEEecCCC-CcccccCCCCCHHHHHHHHhhcCCCc
Q psy7942         100 VTSTNADILAEYSVDD-DTVAIFKKFDE-GRVNYEGPASDEAALRKFLSTQSLPL  152 (216)
Q Consensus       100 ~~t~~~~v~~~~~v~~-p~i~~~~~~de-~~~~y~G~~~~~~~l~~fi~~~~~P~  152 (216)
                       ...+++++++|++.+ |++++|+++.. .+..|.|.+ +.+.|.+||..+....
T Consensus        71 -~d~~~~~~~~~~v~~~Ptl~~f~~g~~~~~~~y~G~~-t~~~l~~fi~~~~~~~  123 (140)
T d2b5ea1          71 -LDHTENDVRGVVIEGYPTIVLYPGGKKSESVVYQGSR-SLDSLFDFIKENGHFD  123 (140)
T ss_dssp             -EEGGGCCCSSCCCSSSSEEEEECCTTSCCCCBCCSCC-CHHHHHHHHHHHCTTC
T ss_pred             -eeccchhccccccccCCeEEEEECCEEcceeEeCCCC-CHHHHHHHHHHcCCCC
Confidence             223566888999986 99999997543 356799999 9999999999885443

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.81  E-value=2.7e-08  Score=71.14  Aligned_cols=98  Identities=17%  Similarity=0.252  Sum_probs=77.0

Q ss_pred             CceeecCHHHHHHhH----hCCCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeee
Q psy7942          29 PAKEFTSVDEIKAFI----ADSKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVT  101 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~----~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      .+..+.|.+++++.+    +++++++|.|+++||+   ...+.|.++++.++++.|.              .++     .
T Consensus         7 ~vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~--------------~vd-----~   67 (114)
T d1xfla_           7 QVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFL--------------KVD-----T   67 (114)
T ss_dssp             CCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSSEEEE--------------EEE-----T
T ss_pred             cEEEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhccccccccee--------------EEE-----e
Confidence            466788888886644    5688999999999984   5567888999988778887              555     6


Q ss_pred             cccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         102 STNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       102 t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ..+++++++|++.+ |++++|+++ +....+.| . +.+.|.+||.++
T Consensus        68 ~~~~~l~~~~~V~~~Pt~~~~~~G-~~v~~~~G-~-~~~~l~~~i~k~  112 (114)
T d1xfla_          68 DELKSVASDWAIQAMPTFMFLKEG-KILDKVVG-A-KKDELQSTIAKH  112 (114)
T ss_dssp             TTSHHHHHHTTCCSSSEEEEEETT-EEEEEEES-C-CHHHHHHHHHHH
T ss_pred             eeceeeccccceeeeEEEEEEECC-EEEEEEeC-c-CHHHHHHHHHHh
Confidence            67889999999986 999999853 22345677 4 789999999875

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.81  E-value=3e-08  Score=70.34  Aligned_cols=98  Identities=18%  Similarity=0.320  Sum_probs=77.0

Q ss_pred             CceeecCHHHHHHhHh--CCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeec
Q psy7942          29 PAKEFTSVDEIKAFIA--DSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTS  102 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~~--~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t  102 (216)
                      .+..+.+.++++..+.  ++++++|.|+.+||.   ...+.|.+++.++ +.+.|.              .++     ..
T Consensus         6 ~v~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~--------------~i~-----~d   66 (111)
T d1xwaa_           6 MVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVL--------------KVD-----VD   66 (111)
T ss_dssp             CEEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEE--------------EEE-----TT
T ss_pred             eEEEECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccceEEE--------------EEE-----ee
Confidence            4668889999988775  478999999999984   5677999999988 456666              344     55


Q ss_pred             ccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         103 TNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       103 ~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      .+++++++|++.. |++++|+++ +....+.|.  +.+.|.+||+.|
T Consensus        67 ~~~~l~~~~~V~~~Pt~~~~~~G-~~v~~~~G~--~~~~l~~~I~~~  110 (111)
T d1xwaa_          67 ECEDIAMEYNISSMPTFVFLKNG-VKVEEFAGA--NAKRLEDVIKAN  110 (111)
T ss_dssp             TCHHHHHHTTCCSSSEEEEEETT-EEEEEEESC--CHHHHHHHHHHT
T ss_pred             cCcchhhcCCCccccEEEEEECC-EEEEEEeCC--CHHHHHHHHHhc
Confidence            6788999999986 999999863 234567785  457899999876

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=98.80  E-value=1.4e-08  Score=71.09  Aligned_cols=97  Identities=18%  Similarity=0.302  Sum_probs=74.8

Q ss_pred             ceeecCHHHHHHhH-hCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeeccc
Q psy7942          30 AKEFTSVDEIKAFI-ADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTN  104 (216)
Q Consensus        30 v~~l~s~~~~~~~~-~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~  104 (216)
                      |++|++ +++++.+ +++++++|.|+.+||+   ...+.|.+++..+ +...|.              .++     ...+
T Consensus         1 v~el~d-~~f~~~v~~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~--------------~v~-----~d~~   60 (104)
T d1fb6a_           1 VQDVND-SSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVY--------------KLN-----TDEA   60 (104)
T ss_dssp             CEECCT-TTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEE--------------EEE-----TTTC
T ss_pred             CeECch-hhHHHHHHcCCCcEEEEEEcCccCCccccCchhHHHHHhhcCcccee--------------EEe-----cccc
Confidence            356665 6677755 4577799999999984   4567889999888 566666              344     5678


Q ss_pred             HHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         105 ADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       105 ~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ++++++|+|.+ |++++|+++ +....|.|.. +.+.|.+||.++
T Consensus        61 ~~l~~~~~V~~~Pt~~~~~~G-~~v~~~~G~~-~~~~l~~~i~~~  103 (104)
T d1fb6a_          61 PGIATQYNIRSIPTVLFFKNG-ERKESIIGAV-PKSTLTDSIEKY  103 (104)
T ss_dssp             HHHHHHTTCCSSSEEEEEETT-EEEEEEEECC-CHHHHHHHHHHH
T ss_pred             hhhhhhcceeeeeEEEEEEcC-eEEEEEeCCC-CHHHHHHHHHHh
Confidence            89999999987 999999853 3345688988 999999999864

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=98.74  E-value=3.3e-08  Score=69.56  Aligned_cols=97  Identities=21%  Similarity=0.285  Sum_probs=76.2

Q ss_pred             ceeecCHHHHHHhH-hCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeeccc
Q psy7942          30 AKEFTSVDEIKAFI-ADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTN  104 (216)
Q Consensus        30 v~~l~s~~~~~~~~-~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~  104 (216)
                      +..| |.+++++.+ +++++++|.|+++||+   .+.+.+.+++..+ +++.|+              .||     +..+
T Consensus         3 ~~~i-~~~~f~~~v~~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~--------------~vd-----~d~~   62 (107)
T d1dbya_           3 AGAV-NDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCV--------------KLN-----TDES   62 (107)
T ss_dssp             CEEE-CHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEE--------------EEE-----TTTC
T ss_pred             ceEe-cHHHHHHHHHhCCCcEEEEEECCCCCCccccChHHHHHHHhhcccceEE--------------EEe-----cccc
Confidence            3455 468888765 4567899999999984   4566888888887 677887              455     6678


Q ss_pred             HHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         105 ADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       105 ~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      ++++++|++.+ |++++|+++ +....|.|.. +.+.|.+||.++
T Consensus        63 ~~l~~~~~V~~~Pt~~~~~~G-~~v~~~~G~~-~~~~l~~~i~~~  105 (107)
T d1dbya_          63 PNVASEYGIRSIPTIMVFKGG-KKCETIIGAV-PKATIVQTVEKY  105 (107)
T ss_dssp             HHHHHHHTCCSSCEEEEESSS-SEEEEEESCC-CHHHHHHHHHHH
T ss_pred             hhHHHHhcccceEEEEEEECC-eEEEEEeCCC-CHHHHHHHHHHh
Confidence            89999999997 999999863 3355688988 999999999875

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=98.74  E-value=1.2e-08  Score=72.63  Aligned_cols=97  Identities=15%  Similarity=0.274  Sum_probs=71.7

Q ss_pred             CceeecCHHHHHHhH-hCCCeEEEEEecCCC---hhHHHHHHHHHhhCCC------ceEEecchhhHHHHhhhhccccce
Q psy7942          29 PAKEFTSVDEIKAFI-ADSKVVVAGLFKDAS---SELAKTFNEIASKVDD------LVFDASSELAKTFNEIASKVDDLV   98 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~-~~~~v~~V~f~~~~~---~~~~~~f~~~A~~~~~------~~F~~~~~~~~~~~~~~~~~~~~~   98 (216)
                      +|+.|++ +++++++ ++++.++|.||.+||   ..+.+.|.++|..+..      ..+.                    
T Consensus         3 ~V~~lt~-~nF~~~v~~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~--------------------   61 (116)
T d2djja1           3 PVTVVVA-KNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIA--------------------   61 (116)
T ss_dssp             SSEECCT-TTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEE--------------------
T ss_pred             CcEEccc-CCHHHHHhcCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEE--------------------
Confidence            5677764 7888765 678889999999998   4567799999987622      1222                    


Q ss_pred             eeecccHHHHHhcCCCC-CeEEEEecCCC-CcccccCCCCCHHHHHHHHhhcC
Q psy7942          99 FVTSTNADILAEYSVDD-DTVAIFKKFDE-GRVNYEGPASDEAALRKFLSTQS  149 (216)
Q Consensus        99 ~~~t~~~~v~~~~~v~~-p~i~~~~~~de-~~~~y~G~~~~~~~l~~fi~~~~  149 (216)
                        .........++++.+ |+|++|++.+. ....|.|.+ +.++|.+||.++.
T Consensus        62 --~~~~~~~~~~~~v~~~Pti~~f~~g~~~~~~~~~g~~-~~~~l~~fi~~~~  111 (116)
T d2djja1          62 --KVDATANDVPDEIQGFPTIKLYPAGAKGQPVTYSGSR-TVEDLIKFIAENG  111 (116)
T ss_dssp             --EEETTTSCCSSCCSSSSEEEEECSSCTTSCCCCCCCS-CHHHHHHHHHHTS
T ss_pred             --ecccchhhhcccccCCCEEEEEECCccCceEEecCCC-CHHHHHHHHHHcc
Confidence              333334456788876 99999987543 356799999 9999999999874

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=98.71  E-value=2.8e-08  Score=70.85  Aligned_cols=99  Identities=22%  Similarity=0.266  Sum_probs=76.2

Q ss_pred             CceeecCHHHHHH----hHhCCCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeee
Q psy7942          29 PAKEFTSVDEIKA----FIADSKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVT  101 (216)
Q Consensus        29 ~v~~l~s~~~~~~----~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      .+..+.+.+++++    .++++++++|.|+.+||.   .+.+.|.++++.+++..|.              .++     .
T Consensus         5 ~vi~i~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~--------------~vd-----~   65 (113)
T d1ti3a_           5 QVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFL--------------KVD-----V   65 (113)
T ss_dssp             CEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSSEEEE--------------EEE-----T
T ss_pred             cEEEEeCHHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCCCceEE--------------eee-----e
Confidence            4677888876655    445678999999999984   5567889999999778887              454     5


Q ss_pred             cccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcC
Q psy7942         102 STNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQS  149 (216)
Q Consensus       102 t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~  149 (216)
                      ..+++++++|++.. |++++|+++ +....+.| . +.+.|.+||.+++
T Consensus        66 d~~~~l~~~~~I~~~Pt~~~~k~G-~~v~~~~G-~-~~~~l~~~i~k~a  111 (113)
T d1ti3a_          66 DELKAVAEEWNVEAMPTFIFLKDG-KLVDKTVG-A-DKDGLPTLVAKHA  111 (113)
T ss_dssp             TTCHHHHHHHHCSSTTEEEEEETT-EEEEEEEC-C-CTTHHHHHHHHHH
T ss_pred             eccccccccCeecccceEEEEECC-EEEEEEcC-C-CHHHHHHHHHHHh
Confidence            67789999999987 999999953 22344567 4 6688999998864

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=98.66  E-value=2e-08  Score=73.73  Aligned_cols=64  Identities=17%  Similarity=0.154  Sum_probs=53.3

Q ss_pred             cCCCceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCCCc
Q psy7942         148 QSLPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQPKR  213 (216)
Q Consensus       148 ~~~P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~~~  213 (216)
                      ..+|+|+++|.+|+..+++.+. +.+++|.+.+ ++.+++++.++++|++||++++|+|+|.....
T Consensus         3 ~~lPLv~e~~~~n~~~~~~~~~-pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~ki~Fv~vd~~~~~   66 (133)
T d2djka1           3 LGSPLIGEIGPETYSDYMSAGI-PLAYIFAETA-EERKELSDKLKPIAEAQRGVINFGTIDAKAFG   66 (133)
T ss_dssp             CSCCCSEECCHHHHHHHHHTTS-CEEEEECSCS-SSHHHHHHHHHHHHHSSTTTSEEEEECTTTTG
T ss_pred             CCCCceeccChhhHHHHhcCCC-CEEEEEeCCc-hHHHHHHHHHHHHHHHhcCceEEEEEeHHHhH
Confidence            3689999999999999999874 4455565544 56789999999999999999999999987654

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.56  E-value=3.5e-07  Score=65.04  Aligned_cols=98  Identities=9%  Similarity=0.139  Sum_probs=71.9

Q ss_pred             eecCHHHHHHhHhCCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHH
Q psy7942          32 EFTSVDEIKAFIADSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADI  107 (216)
Q Consensus        32 ~l~s~~~~~~~~~~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v  107 (216)
                      .+.+.+++++.+.+++.++|.|+.+||.   ...+.|.+++..+ ..+.|.              .++..-- ....+++
T Consensus        12 ~~~t~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v--------------~~~~~~~-~~~~~~~   76 (115)
T d1zmaa1          12 EVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFI--------------NSEEPSQ-LNDLQAF   76 (115)
T ss_dssp             EECCHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEE--------------ETTCGGG-HHHHHHH
T ss_pred             eeCCHHHHHHHHhcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhhhhhh--------------eeecccc-ccccccc
Confidence            4557899999999999999999999984   5567888888777 445554              1210000 1112457


Q ss_pred             HHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHh
Q psy7942         108 LAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLS  146 (216)
Q Consensus       108 ~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~  146 (216)
                      +++|+|.. |++++|+++ +....|.|.. +.++|.+||.
T Consensus        77 ~~~~~V~~~PTli~~~~g-k~~~~~~G~~-~~~el~~fla  114 (115)
T d1zmaa1          77 RSRYGIPTVPGFVHITDG-QINVRCDSSM-SAQEIKDFAG  114 (115)
T ss_dssp             HHHHTCCSSCEEEEEETT-EEEEECCTTC-CHHHHHHHHT
T ss_pred             ccccccccccEEEEEECC-EEEEEEcCCC-CHHHHHHHHc
Confidence            88999987 999999963 3466789999 9999999985

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=98.47  E-value=4.1e-07  Score=64.60  Aligned_cols=96  Identities=20%  Similarity=0.268  Sum_probs=73.2

Q ss_pred             ceeecCHHHHHHhHhC--CCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecc-
Q psy7942          30 AKEFTSVDEIKAFIAD--SKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTST-  103 (216)
Q Consensus        30 v~~l~s~~~~~~~~~~--~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~-  103 (216)
                      +..++ .+++.+++..  +++++|.|+.+||+   ...+.|.++|+++.++.|.              .+|     .+. 
T Consensus         8 v~~~~-~d~f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~v~~~--------------~vd-----~~~~   67 (112)
T d1f9ma_           8 VTEVN-KDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFL--------------KLD-----CNQE   67 (112)
T ss_dssp             EEEEC-TTTHHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEE--------------EEE-----CSST
T ss_pred             eEEeC-HHHHHHHHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhccccccceee--------------ccc-----cccc
Confidence            56675 4678888864  57899999999984   4577899999999777777              444     543 


Q ss_pred             cHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         104 NADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       104 ~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      +++++++|++.. |++++|+++ +....|.|.  +.+.|.+||...
T Consensus        68 ~~~l~~~~~V~~~Pt~~~~k~G-~~v~~~~G~--~~~~l~e~i~~~  110 (112)
T d1f9ma_          68 NKTLAKELGIRVVPTFKILKEN-SVVGEVTGA--KYDKLLEAIQAA  110 (112)
T ss_dssp             THHHHHHHCCSSSSEEEEEETT-EEEEEEESS--CHHHHHHHHHHH
T ss_pred             chhhHhheeeccCCEEEEEECC-EEEEEEeCC--CHHHHHHHHHHc
Confidence            688999999987 999999853 334557785  567899998764

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=6.3e-07  Score=66.11  Aligned_cols=75  Identities=24%  Similarity=0.229  Sum_probs=62.6

Q ss_pred             eeecCHHHHHHhHhC--CCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeeccc
Q psy7942          31 KEFTSVDEIKAFIAD--SKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTN  104 (216)
Q Consensus        31 ~~l~s~~~~~~~~~~--~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~  104 (216)
                      ..|.|..+++..+.+  +++++|-|+++||.   ...+.+.++|.++ +.+.|+              .||     +..+
T Consensus         5 ~~l~s~~~~dq~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~--------------~VD-----vd~~   65 (137)
T d1qgva_           5 PHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIY--------------LVD-----ITEV   65 (137)
T ss_dssp             CBCCSHHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEE--------------EEE-----TTTC
T ss_pred             cccCCHHHHHHHHHhCCCCEEEEEEECCCCccchhcChHHHHHHHHhhccceEE--------------Eee-----cccc
Confidence            467789999988864  56999999999984   5677999999998 557888              566     7778


Q ss_pred             HHHHHhcCCCC-CeEEEEecC
Q psy7942         105 ADILAEYSVDD-DTVAIFKKF  124 (216)
Q Consensus       105 ~~v~~~~~v~~-p~i~~~~~~  124 (216)
                      +++++.|+|.+ |++++|++.
T Consensus        66 ~~la~~~~I~~~PT~~~f~~g   86 (137)
T d1qgva_          66 PDFNKMYELYDPCTVMFFFRN   86 (137)
T ss_dssp             CTTTTSSCSCSSCEEEEEETT
T ss_pred             chhhhhcCeeeEEEEEEEeCC
Confidence            89999999987 999999964

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.27  E-value=3.8e-06  Score=58.42  Aligned_cols=91  Identities=18%  Similarity=0.197  Sum_probs=65.1

Q ss_pred             HHHHHhHh-CCCeEEEEEecCCCh---hHHHHHHHHHhhC-----CCceEEecchhhHHHHhhhhccccceeeecccHHH
Q psy7942          37 DEIKAFIA-DSKVVVAGLFKDASS---ELAKTFNEIASKV-----DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADI  107 (216)
Q Consensus        37 ~~~~~~~~-~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-----~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v  107 (216)
                      +..+.+.. ++++.++.|+++||.   ...+.|.++|...     ..+.+.              .+|     ...++++
T Consensus         5 ~~~e~~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~--------------~id-----~~~~~~l   65 (107)
T d1a8la2           5 ETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGD--------------MVE-----AIEYPEW   65 (107)
T ss_dssp             HHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEE--------------EEE-----GGGCHHH
T ss_pred             HHHHHHHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEE--------------Eec-----ccccccc
Confidence            33344444 456677778999984   4567888887542     345565              344     5567899


Q ss_pred             HHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         108 LAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       108 ~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      +++|+|.+ |++++++++ +....+.|.. +.+.+.+||...
T Consensus        66 ~~~~~V~~vPTi~i~~~G-~~~~~~~G~~-~~~~~~~~i~~a  105 (107)
T d1a8la2          66 ADQYNVMAVPKIVIQVNG-EDRVEFEGAY-PEKMFLEKLLSA  105 (107)
T ss_dssp             HHHTTCCSSCEEEEEETT-EEEEEEESCC-CHHHHHHHHHHH
T ss_pred             ccccccccceEEEEEeCC-eEEEEEECCC-CHHHHHHHHHHh
Confidence            99999987 999999863 3356788998 999999999763

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=8.5e-07  Score=64.96  Aligned_cols=115  Identities=14%  Similarity=0.120  Sum_probs=83.7

Q ss_pred             CCChHHHHHHHHhhhCCCceeecCHHHHHHhHhCC--CeEEEEEecCCC---hhHHHHHHHHHhhCCC--ceEEecchhh
Q psy7942          12 GRTAEDIVNWLLKKTGPPAKEFTSVDEIKAFIADS--KVVVAGLFKDAS---SELAKTFNEIASKVDD--LVFDASSELA   84 (216)
Q Consensus        12 ~Rta~~iv~~l~~~~~~~v~~l~s~~~~~~~~~~~--~v~~V~f~~~~~---~~~~~~f~~~A~~~~~--~~F~~~~~~~   84 (216)
                      ....+.+++=|..+   ....+ +.++++.++.+.  .+++|.|++.||   ......+.++|+++++  +.++      
T Consensus         4 ~~~~~~~~~~~~~~---g~~~~-~~~~~d~~~~~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a------   73 (132)
T d2hfda1           4 DTPFDALWQRMLAR---GWTPV-SESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVA------   73 (132)
T ss_dssp             CCHHHHHHHHHHTT---TCEEE-CHHHHHHHHHHCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEE------
T ss_pred             CCcchHHHHHHHHc---CCccc-ccccHHHHHHhCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeE------
Confidence            34445555555443   55555 478999988764  466677777776   5667899999999843  4566      


Q ss_pred             HHHHhhhhccccceeeecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhcCCC
Q psy7942          85 KTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQSLP  151 (216)
Q Consensus        85 ~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~~P  151 (216)
                              .||     +..+++++++|+|.. |++++|+++ +....+.|.. +.+.|..||....-|
T Consensus        74 --------~Vd-----~d~~~~la~~~~V~~~PT~~~~~~G-~~v~~~~G~~-~~~~l~~~i~~ll~~  126 (132)
T d2hfda1          74 --------IAD-----LEQSEAIGDRFGVFRFPATLVFTGG-NYRGVLNGIH-PWAELINLMRGLVEP  126 (132)
T ss_dssp             --------EEC-----HHHHHHHHHHHTCCSCCEEEEEETT-EEEEEECCCS-CHHHHHHHHHHHHSC
T ss_pred             --------EEE-----ecCCHHHHHhhccCcceeEEEEEcC-cEeeeecCCC-CHHHHHHHHHHHhCc
Confidence                    566     677889999999986 999999863 3355688999 999999999865433

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.25  E-value=4e-07  Score=66.09  Aligned_cols=55  Identities=13%  Similarity=0.049  Sum_probs=46.4

Q ss_pred             eeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCC
Q psy7942         153 VVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDD  209 (216)
Q Consensus       153 v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~  209 (216)
                      +++++++|+..|+.++. +.+++|++. .++.+++...++++|++||++++|+|+|-
T Consensus         2 ~gei~~~~~~~y~~~~~-Pl~~~f~~~-~~~~~~~~~~~~~vAk~fkgki~Fv~~D~   56 (125)
T d2b5ea3           2 FGEIDGSVFAQYVESGL-PLGYLFYND-EEELEEYKPLFTELAKKNRGLMNFVSIDA   56 (125)
T ss_dssp             SCBCCHHHHHHHHHTTS-CEEEEEESS-HHHHHHHHHHHHHHHHHTTTTCEEEEEEH
T ss_pred             CCccCHHHHHHHHhcCC-CEEEEEeCC-hHHHHHHHHHHHHHHHHhcCeeEEEEEch
Confidence            68999999999999884 445556654 45688999999999999999999999985

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.16  E-value=1.2e-06  Score=58.54  Aligned_cols=78  Identities=18%  Similarity=0.284  Sum_probs=59.6

Q ss_pred             CCeEEEEEecCCC---hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeEEE
Q psy7942          46 SKVVVAGLFKDAS---SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAI  120 (216)
Q Consensus        46 ~~v~~V~f~~~~~---~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~  120 (216)
                      +++.++.|+++||   ....+.+.+++..+ +...+.              .++     ...+++++++|+|.+ |++++
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~--------------~~~-----~d~~~~la~~~~V~~~Pt~~i   62 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVE--------------YIN-----VMENPQKAMEYGIMAVPTIVI   62 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEE--------------EEE-----SSSSCCTTTSTTTCCSSEEEE
T ss_pred             CceEEEEEECCCCcChHhhhhhccccccccccccccc--------------ccc-----ccccccccccCCceEeeEEEE
Confidence            4678888999997   46677888888887 445554              233     556788999999987 99998


Q ss_pred             EecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         121 FKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       121 ~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      +++.     .|.|.. +.+.|.+||+++
T Consensus        63 ~~~g-----~~~G~~-~~~~l~~~i~~~   84 (85)
T d1fo5a_          63 NGDV-----EFIGAP-TKEALVEAIKKR   84 (85)
T ss_dssp             TTEE-----ECCSSS-SSHHHHHHHHHH
T ss_pred             ECCc-----EEECCC-CHHHHHHHHHhc
Confidence            7742     366888 889999999875

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.14  E-value=3.1e-06  Score=60.72  Aligned_cols=97  Identities=13%  Similarity=0.150  Sum_probs=64.8

Q ss_pred             CceeecCHHHHHHhHhC--CCeEEEEEecCCC---hhHHHHHHHHHhhCC--CceEEecchhhHHHHhhhhccccceeee
Q psy7942          29 PAKEFTSVDEIKAFIAD--SKVVVAGLFKDAS---SELAKTFNEIASKVD--DLVFDASSELAKTFNEIASKVDDLVFVT  101 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~~~--~~v~~V~f~~~~~---~~~~~~f~~~A~~~~--~~~F~~~~~~~~~~~~~~~~~~~~~~~~  101 (216)
                      ..+.+ +..+++.++..  ..++++.|++.||   ....+.+.++++.++  .+.|+              .||     .
T Consensus        12 g~~~v-~~~~ld~~~~~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~--------------~Vd-----~   71 (119)
T d2es7a1          12 GWQPV-EASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVA--------------VAD-----L   71 (119)
T ss_dssp             TCEEC-CCC--------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEE--------------EEC-----H
T ss_pred             CCcee-cccCHHHHHHhCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEE--------------EEE-----C
Confidence            44455 45678888775  4566666777775   677889999999984  46666              455     6


Q ss_pred             cccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942         102 STNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       102 t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                      ..+++++++|++.. |++++|++ .+....+.|.. +.++|.++|+.
T Consensus        72 d~~~~l~~~~~V~~~Pt~~~~~~-G~~v~~~~G~~-~~~~l~~~i~~  116 (119)
T d2es7a1          72 EQSEAIGDRFNVRRFPATLVFTD-GKLRGALSGIH-PWAELLTLMRS  116 (119)
T ss_dssp             HHHHHHHHTTTCCSSSEEEEESC-C----CEESCC-CHHHHHHHHHH
T ss_pred             CCCHHHHHhcCcCcceEEEEEEc-CeEEEEeeCCC-CHHHHHHHHHH
Confidence            67788999999986 99999985 34456788988 99999999875

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.01  E-value=2.7e-05  Score=53.27  Aligned_cols=77  Identities=12%  Similarity=0.126  Sum_probs=61.4

Q ss_pred             CCCeEEEEEecCCC---hhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeEEE
Q psy7942          45 DSKVVVAGLFKDAS---SELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAI  120 (216)
Q Consensus        45 ~~~v~~V~f~~~~~---~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~  120 (216)
                      +.++.++.|+.+||   ....+.+.++|..++++.|.              .+|     ...+++++++|+|.. |++++
T Consensus        14 ~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~~i~~~--------------~vd-----~~~~~~l~~~~~I~~vPt~~~   74 (96)
T d1hyua4          14 DGDFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHT--------------AID-----GGTFQNEITERNVMGVPAVFV   74 (96)
T ss_dssp             CSCEEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEE--------------EEE-----TTTCHHHHHHTTCCSSSEEEE
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHhCCceEEE--------------EEe-----cccchHHHhhcccccccEEEE
Confidence            46677888999997   45577888889888888887              455     777899999999986 99865


Q ss_pred             EecCCCCcccccCCCCCHHHHHHHHh
Q psy7942         121 FKKFDEGRVNYEGPASDEAALRKFLS  146 (216)
Q Consensus       121 ~~~~de~~~~y~G~~~~~~~l~~fi~  146 (216)
                        +  + ...|.|.. +.+.|.++|.
T Consensus        75 --n--g-~~~~~G~~-~~~~l~~~le   94 (96)
T d1hyua4          75 --N--G-KEFGQGRM-TLTEIVAKVD   94 (96)
T ss_dssp             --T--T-EEEEESCC-CHHHHHHHHC
T ss_pred             --C--C-EEEEecCC-CHHHHHHHHh
Confidence              2  2 34688988 9999999885

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.92  E-value=9.6e-06  Score=54.22  Aligned_cols=75  Identities=15%  Similarity=0.232  Sum_probs=59.0

Q ss_pred             EEEEEecCCC---hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCCCC-CeEEEEec
Q psy7942          49 VVAGLFKDAS---SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSVDD-DTVAIFKK  123 (216)
Q Consensus        49 ~~V~f~~~~~---~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v~~-p~i~~~~~  123 (216)
                      .++.|+.+||   ....+.+.++|..+ +++.|.              .+|     ...+++++++|+|.+ |+++++. 
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~--------------~vd-----~d~~~~l~~~~~V~~~Pt~~~~~-   63 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVE--------------KID-----IMVDREKAIEYGLMAVPAIAING-   63 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEE--------------EEC-----TTTCGGGGGGTCSSCSSEEEETT-
T ss_pred             EEEEEECCCCcchHHHHHHHhhhccccccccccc--------------ccc-----cccchhhHHhcCceEeCEEEECC-
Confidence            4555888887   45778899999888 668887              455     667889999999986 9988733 


Q ss_pred             CCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         124 FDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       124 ~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                          ...|.|.. +.+.|.+||+.+
T Consensus        64 ----~~~~~G~~-~~~~l~~~i~~~   83 (85)
T d1nhoa_          64 ----VVRFVGAP-SREELFEAINDE   83 (85)
T ss_dssp             ----TEEEECSS-CCHHHHHHHHHH
T ss_pred             ----cEEEEcCC-CHHHHHHHHHHh
Confidence                23578988 899999999875

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=4e-05  Score=54.54  Aligned_cols=98  Identities=13%  Similarity=0.146  Sum_probs=65.7

Q ss_pred             eecCHHHHHHhHhC--CCeEEEEEecC-------CCh---hHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccc--c
Q psy7942          32 EFTSVDEIKAFIAD--SKVVVAGLFKD-------ASS---ELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVD--D   96 (216)
Q Consensus        32 ~l~s~~~~~~~~~~--~~v~~V~f~~~-------~~~---~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~--~   96 (216)
                      .+.+.+++.+.+++  +++++|.|+++       ||+   ...+.+.++++.+ +++.|.              .|+  +
T Consensus         5 ~v~~~~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~--------------~vdv~~   70 (119)
T d1woua_           5 SVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFI--------------YCQVGE   70 (119)
T ss_dssp             EEESHHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEE--------------EEECCC
T ss_pred             EeCCHHHHHHHHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEE--------------EEECCC
Confidence            46688999998875  46899999875       874   5577888888887 567776              232  0


Q ss_pred             ceeeecccHHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHh
Q psy7942          97 LVFVTSTNADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLS  146 (216)
Q Consensus        97 ~~~~~t~~~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~  146 (216)
                      .--....+..++++|+|.+ ||+++|++. +....+++ . +.+.|..|+.
T Consensus        71 ~~~~~d~~~~l~~~~~V~~iPT~i~~~~g-~~l~~~~~-~-~~~ll~~~~~  118 (119)
T d1woua_          71 KPYWKDPNNDFRKNLKVTAVPTLLKYGTP-QKLVESEC-L-QANLVEMLFS  118 (119)
T ss_dssp             HHHHHCTTCHHHHHHCCCSSSEEEETTSS-CEEEGGGG-G-CHHHHHHHHH
T ss_pred             CcccchhhhhHHHhCCeEEEEEEEEEECC-eEEeeeec-C-CHHHHHHHhc
Confidence            0000123456888999987 999999863 22333343 2 6677777764

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=0.0002  Score=49.94  Aligned_cols=101  Identities=17%  Similarity=0.235  Sum_probs=65.0

Q ss_pred             eeecCHHHHHHhHh--CCCeEEEEEecCCChhHH---HHH---HHHHhhCCCceEEecchhhHHHHhhhhccccceeeec
Q psy7942          31 KEFTSVDEIKAFIA--DSKVVVAGLFKDASSELA---KTF---NEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTS  102 (216)
Q Consensus        31 ~~l~s~~~~~~~~~--~~~v~~V~f~~~~~~~~~---~~f---~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t  102 (216)
                      +.|.+.++++..+.  .+++++|-|+++||....   +.+   .+++..+.++.+.              .++...- ..
T Consensus         5 ~~i~~~~~~~~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~~~~~--------------~~~~~~~-~~   69 (117)
T d2fwha1           5 TQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLL--------------QANVTAN-DA   69 (117)
T ss_dssp             EECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEE--------------EEECTTC-CH
T ss_pred             eEecCHHHHHHHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhccceEEE--------------ecccccc-hh
Confidence            46778888887765  467899999999985443   233   3334444444433              1110000 22


Q ss_pred             ccHHHHHhcCCCC-CeEEEEecCCCCc--ccccCCCCCHHHHHHHHhh
Q psy7942         103 TNADILAEYSVDD-DTVAIFKKFDEGR--VNYEGPASDEAALRKFLST  147 (216)
Q Consensus       103 ~~~~v~~~~~v~~-p~i~~~~~~de~~--~~y~G~~~~~~~l~~fi~~  147 (216)
                      .+++++++|++.+ |++++|.+..+..  ..+.|.. +.+.+.+||++
T Consensus        70 ~~~~l~~~~~v~~~Pt~~~~~~~G~~~~~~~~~G~~-~~~~~~~~l~~  116 (117)
T d2fwha1          70 QDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFM-DAETFSAHLRD  116 (117)
T ss_dssp             HHHHHHHHTTCCSSSEEEEECTTSCBCGGGCBCSCC-CHHHHHHHHHH
T ss_pred             HHHHHHhhhehhhceEEEEEeCCCcEEecccccccC-CHHHHHHHHhc
Confidence            3556889999987 9999997532222  2356888 99999999976

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.59  E-value=8.3e-05  Score=58.40  Aligned_cols=99  Identities=17%  Similarity=0.221  Sum_probs=70.3

Q ss_pred             CceeecCHHHHHHhHhC---CCeEEEEEecCCC---hhHHHHHHHHHhhCCCceEEecchhhHHHHhhhhccccceeeec
Q psy7942          29 PAKEFTSVDEIKAFIAD---SKVVVAGLFKDAS---SELAKTFNEIASKVDDLVFDASSELAKTFNEIASKVDDLVFVTS  102 (216)
Q Consensus        29 ~v~~l~s~~~~~~~~~~---~~v~~V~f~~~~~---~~~~~~f~~~A~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t  102 (216)
                      .+..|.+.+++.+.+..   +..++|-||.+|+   ..+.+.|..+|.+++++.|.              .|+     ..
T Consensus       100 ~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~vkF~--------------ki~-----~~  160 (217)
T d2trcp_         100 FVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFC--------------KIR-----AS  160 (217)
T ss_dssp             SEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTTSEEE--------------EEE-----HH
T ss_pred             eEEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhcccceEE--------------EEc-----cc
Confidence            37788888888777753   3368888999986   56678999999999999998              332     22


Q ss_pred             ccHHHHHhcCCCC-CeEEEEecCCCCcccc------cC-CCCCHHHHHHHHhhcC
Q psy7942         103 TNADILAEYSVDD-DTVAIFKKFDEGRVNY------EG-PASDEAALRKFLSTQS  149 (216)
Q Consensus       103 ~~~~v~~~~~v~~-p~i~~~~~~de~~~~y------~G-~~~~~~~l~~fi~~~~  149 (216)
                      . ..+..+|++.. |+|++|++++. ...+      -| ++ +.++|+.|+..+.
T Consensus       161 ~-~~~~~~~~i~~lPtl~~yk~G~~-v~~~vg~~~~~g~~~-~~~~lE~~L~~~g  212 (217)
T d2trcp_         161 N-TGAGDRFSSDVLPTLLVYKGGEL-ISNFISVAEQFAEDF-FAADVESFLNEYG  212 (217)
T ss_dssp             H-HTCSTTSCGGGCSEEEEEETTEE-EEEETTGGGGSCSSC-CHHHHHHHHHTTT
T ss_pred             c-chhHHhCCCCCCCeEEEEECCEE-EEEEECccccccccC-CHHHHHHHHHHcC
Confidence            1 22456788875 99999997431 1112      22 45 8899999998764

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=97.50  E-value=0.00084  Score=48.03  Aligned_cols=101  Identities=14%  Similarity=0.185  Sum_probs=70.4

Q ss_pred             CCCceeecCHHHHHHhHhCCCeEEEEEecCCC--hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecc
Q psy7942          27 GPPAKEFTSVDEIKAFIADSKVVVAGLFKDAS--SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTST  103 (216)
Q Consensus        27 ~~~v~~l~s~~~~~~~~~~~~v~~V~f~~~~~--~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~  103 (216)
                      -|-+.+++ .+.+..+.+.....++.|+.+.+  .+....|.++|+++ +.+.|.+              +|     ...
T Consensus         5 lPLv~e~~-~~n~~~~~~~~~pl~~lf~~~~~~~~~~~~~~~~vA~~~~~ki~Fv~--------------vd-----~~~   64 (133)
T d2djka1           5 SPLIGEIG-PETYSDYMSAGIPLAYIFAETAEERKELSDKLKPIAEAQRGVINFGT--------------ID-----AKA   64 (133)
T ss_dssp             CCCSEECC-HHHHHHHHHTTSCEEEEECSCSSSHHHHHHHHHHHHHSSTTTSEEEE--------------EC-----TTT
T ss_pred             CCceeccC-hhhHHHHhcCCCCEEEEEeCCchHHHHHHHHHHHHHHHhcCceEEEE--------------Ee-----HHH
Confidence            35667775 78899988877777776665433  45578999999999 7788882              33     223


Q ss_pred             cHHHHHhcCCC---CCeEEEEecCCCCcccc--cCCCCCHHHHHHHHhhc
Q psy7942         104 NADILAEYSVD---DDTVAIFKKFDEGRVNY--EGPASDEAALRKFLSTQ  148 (216)
Q Consensus       104 ~~~v~~~~~v~---~p~i~~~~~~de~~~~y--~G~~~~~~~l~~fi~~~  148 (216)
                      ...+.+.++++   .|+++++...+.....|  .+.+ +.+.|.+||...
T Consensus        65 ~~~~l~~~gl~~~~~P~~~i~~~~~~~~~~~~~~~~i-~~~~i~~Fi~d~  113 (133)
T d2djka1          65 FGAHAGNLNLKTDKFPAFAIQEVAKNQKFPFDQEKEI-TFEAIKAFVDDF  113 (133)
T ss_dssp             TGGGTTTTTCCSSSSSEEEEECTTTCCBCCCCSSSCC-CHHHHHHHHHHH
T ss_pred             hHHHHHHhcCCcccCCcEEEEEcCCCceecCCccccC-CHHHHHHHHHHH
Confidence            34556777875   39898877544434455  3567 899999999764

>d2b5ea2 c.47.1.2 (A:142-239) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.22  E-value=0.00042  Score=46.44  Aligned_cols=84  Identities=27%  Similarity=0.493  Sum_probs=59.4

Q ss_pred             HHHHhHhCCC---eEEEEEecCCChhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHHHhcCC
Q psy7942          38 EIKAFIADSK---VVVAGLFKDASSELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEYSV  113 (216)
Q Consensus        38 ~~~~~~~~~~---v~~V~f~~~~~~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~~v  113 (216)
                      +++.++.+..   +++|-. .-.+....++|.++|..+ +++.|.                      .-.+.+       
T Consensus         7 dl~~~l~n~t~v~pVVV~~-Gv~d~~fNeTF~~~A~~l~~Dy~Fv----------------------s~~~~~-------   56 (98)
T d2b5ea2           7 DLPAYLANETFVTPVIVQS-GKIDADFNATFYSMANKHFNDYDFV----------------------SAENAD-------   56 (98)
T ss_dssp             CHHHHHHHSCCSSCEEEEE-ESCCHHHHHHHHHHHHHTTTTCEEE----------------------EEECTT-------
T ss_pred             hhHHHHhcCcccCCEEEeC-CccccchhHHHHHHHHHhhcceEEE----------------------eccCCC-------
Confidence            4667777655   455543 333567899999999998 899998                      221110       


Q ss_pred             CCCeEEEEecCC-CCcccccCCC---CCHHHHHHHHhhcCCC
Q psy7942         114 DDDTVAIFKKFD-EGRVNYEGPA---SDEAALRKFLSTQSLP  151 (216)
Q Consensus       114 ~~p~i~~~~~~d-e~~~~y~G~~---~~~~~l~~fi~~~~~P  151 (216)
                      +.|.+.+|-+.+ .+++.|+|+.   .+.+.+.+||+..++|
T Consensus        57 ~~~kLsV~LP~e~dEPIvf~G~~~~i~~a~~l~~WlkVe~lP   98 (98)
T d2b5ea2          57 DDFKLSIYLPSAMDEPVVYNGKKADIADADVFEKWLQVEALP   98 (98)
T ss_dssp             SCCEEEEEETTEEEEEEECCSCHHHHTSHHHHHHHHHHHSSC
T ss_pred             CCccEEEECCCCCCCCeEEcCccCCcccHHHHHHHHeeeccC
Confidence            137787777653 3689999964   3778899999999887

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.15  E-value=0.0013  Score=46.81  Aligned_cols=94  Identities=12%  Similarity=0.156  Sum_probs=63.4

Q ss_pred             CHHHHHHhHhCCCeEEEEEecCCC--hhHHHHHHHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecccHHHHHhc
Q psy7942          35 SVDEIKAFIADSKVVVAGLFKDAS--SELAKTFNEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTSTNADILAEY  111 (216)
Q Consensus        35 s~~~~~~~~~~~~v~~V~f~~~~~--~~~~~~f~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~~~~v~~~~  111 (216)
                      +.+.+.+++++..+.++.|+.+.+  ......|.++|+++ ..+.|.+              +|     ......+++.+
T Consensus         6 ~~~~~~~y~~~~~Pl~~~f~~~~~~~~~~~~~~~~vAk~fkgki~Fv~--------------~D-----~~~~~~~l~~f   66 (125)
T d2b5ea3           6 DGSVFAQYVESGLPLGYLFYNDEEELEEYKPLFTELAKKNRGLMNFVS--------------ID-----ARKFGRHAGNL   66 (125)
T ss_dssp             CHHHHHHHHHTTSCEEEEEESSHHHHHHHHHHHHHHHHHTTTTCEEEE--------------EE-----HHHHTTHHHHT
T ss_pred             CHHHHHHHHhcCCCEEEEEeCChHHHHHHHHHHHHHHHHhcCeeEEEE--------------Ec-----hHHhHHHHHHc
Confidence            467788888877677766775532  35577999999999 6788883              22     22334567788


Q ss_pred             CCCC--CeEEEEecCCCCcccc-------------cCCCCCHHHHHHHHhhc
Q psy7942         112 SVDD--DTVAIFKKFDEGRVNY-------------EGPASDEAALRKFLSTQ  148 (216)
Q Consensus       112 ~v~~--p~i~~~~~~de~~~~y-------------~G~~~~~~~l~~fi~~~  148 (216)
                      |++.  |.+++....+.....+             .+++ +.++|.+|+...
T Consensus        67 gl~e~~P~~~i~~~~~~~ky~~~~~~~~~~~~~~~~~e~-t~~~i~~F~~d~  117 (125)
T d2b5ea3          67 NMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVL-ESKAIESLVKDF  117 (125)
T ss_dssp             TCCSCSSEEEEEETTTTEEEECCCCCHHHHHTCCSCCCC-CHHHHHHHHHHH
T ss_pred             CCCccCCcEEEEecccCcccccchhhhhhcccccccccC-CHHHHHHHHHHH
Confidence            8763  9998877533222222             3678 899999998753

>d1a8ya3 c.47.1.3 (A:229-347) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.11  E-value=0.0004  Score=48.37  Aligned_cols=59  Identities=15%  Similarity=0.181  Sum_probs=48.3

Q ss_pred             eeeeCcchHHHhhccCCc-ceEEEEEeCCccchhhhhHHHHHHHHhccCc--eEEEEcCCCC
Q psy7942         153 VVEFNHETAQKIFGGEIK-SHLLVFFSKAAGHYESHFEPVQTVAKDFREK--EEQDEDDDQP  211 (216)
Q Consensus       153 v~~~~~~~~~~~~~~~~~-~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~--~~f~~~d~~~  211 (216)
                      ++.++.+++..+++..+. .+++.|+..+.++..++++.++++|++|.++  ++|+|+|--+
T Consensus         2 lrKl~~e~m~e~W~dd~~g~~IvAFaee~d~dG~eFl~ilk~vA~~nt~n~~LsivWIDPD~   63 (119)
T d1a8ya3           2 LRKLKPESMYETWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDD   63 (119)
T ss_dssp             EEECCTTTHHHHHTCCBTTEEEEEECCTTSHHHHHHHHHHHHHHHHSTTCSSCCEEEECGGG
T ss_pred             ccccchHHHHHHHhcccCCceEEEEecCCCccHHHHHHHHHHHHHHcCcCCCceEEEECCcc
Confidence            567888899888887654 4566688887788899999999999999875  8999998543

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=96.10  E-value=0.0084  Score=40.67  Aligned_cols=58  Identities=10%  Similarity=0.172  Sum_probs=46.3

Q ss_pred             ceeeeCcchHHH-hhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         152 LVVEFNHETAQK-IFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       152 ~v~~~~~~~~~~-~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      -|.++|.+++.. +.+++ ++.++.|+.++.+....+...+.++|.++.+++.|+.+|..
T Consensus         3 ~V~~lt~~~f~~~v~~~~-~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d   61 (108)
T d1thxa_           3 GVITITDAEFESEVLKAE-QPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEID   61 (108)
T ss_dssp             SEEECCGGGHHHHTTTCS-SCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEEST
T ss_pred             CceECCHHHHHHHHHhCC-CcEEEEEECCCCCCccccchHHHHHHHhcCCcceeceeccc
Confidence            478999999876 55554 34566688888888899999999999999999888777643

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=96.06  E-value=0.0058  Score=41.32  Aligned_cols=58  Identities=14%  Similarity=0.181  Sum_probs=48.1

Q ss_pred             eeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         153 VVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       153 v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      ..++|.+++.+..+++ ++.++.|+.++.+.+......+.++|++|.+++.|+.+|...
T Consensus         2 ~i~lt~~~f~~~i~~~-k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~   59 (105)
T d1nw2a_           2 TMTLTDANFQQAIQGD-KPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDE   59 (105)
T ss_dssp             CEEECTTTHHHHTTSS-SCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTT
T ss_pred             EEEECHHHHHHHHhCC-CcEEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECCC
Confidence            3578999999888776 455666988888888999999999999999999998887643

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=95.78  E-value=0.068  Score=37.30  Aligned_cols=103  Identities=7%  Similarity=0.040  Sum_probs=59.0

Q ss_pred             HhCCCeEEEEEecCCChhHH---HHHHHHHhhCCCce-EEecchhhHHHHhhhhccccc--eeeecccHHHHHhcCCCC-
Q psy7942          43 IADSKVVVAGLFKDASSELA---KTFNEIASKVDDLV-FDASSELAKTFNEIASKVDDL--VFVTSTNADILAEYSVDD-  115 (216)
Q Consensus        43 ~~~~~v~~V~f~~~~~~~~~---~~f~~~A~~~~~~~-F~~~~~~~~~~~~~~~~~~~~--~~~~t~~~~v~~~~~v~~-  115 (216)
                      +...++++|.|++.||.+..   +.+.+++...-.+. ..... ........+.+.+..  ..+...+..+...|++.+ 
T Consensus        17 l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~~~~vi~i~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~   95 (136)
T d1z5ye1          17 LTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQGIRVVGMNYKD-DRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGA   95 (136)
T ss_dssp             HHSSSCEEEEEECTTCHHHHHHHHHHHHHHHTTCCEEEEEESC-CHHHHHHHHHHHCCCCSEEEEESSCHHHHHHTCCSB
T ss_pred             HcCCCEEEEEEEcCcCCCcCccccchhhhhhhhhhhccccccc-chhhhHHHHHHcCCccceeecccchhHHHhcccCCc
Confidence            33678999999999996554   44555554432222 22111 122222222222222  122345566889999987 


Q ss_pred             CeEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942         116 DTVAIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       116 p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                      |+.+++-+...-...+.|.. +.+.+.+.|+.
T Consensus        96 P~~~liD~~G~i~~~~~G~~-~~~~l~~~i~~  126 (136)
T d1z5ye1          96 PETFLIDGNGIIRYRHAGDL-NPRVWEEEIKP  126 (136)
T ss_dssp             SEEEEECTTSCEEEEEESCC-CHHHHHHHTHH
T ss_pred             ceEEEEcCCCEEEEEEEcCC-CHHHHHHHHHH
Confidence            99998875333234467888 88877776653

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.63  E-value=0.089  Score=36.45  Aligned_cols=101  Identities=12%  Similarity=0.166  Sum_probs=64.5

Q ss_pred             CCCeEEEEEecCCChhH---HHHHHHHHhhCCCce-EEecc-hhhHHHHhhhhcccc--ceeeecccHHHHHhcCCCC-C
Q psy7942          45 DSKVVVAGLFKDASSEL---AKTFNEIASKVDDLV-FDASS-ELAKTFNEIASKVDD--LVFVTSTNADILAEYSVDD-D  116 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~~~---~~~f~~~A~~~~~~~-F~~~~-~~~~~~~~~~~~~~~--~~~~~t~~~~v~~~~~v~~-p  116 (216)
                      ..++++|.|+.+||...   .+.+.++++++++.. ++++. +..+.+...+.+.+-  ...+...+..+...|++.. |
T Consensus        24 ~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~P  103 (134)
T d1zzoa1          24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQP  103 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCSSS
T ss_pred             CCCEEEEEecccccCcccccchhhHHHHhhhcccccccccccccchhHHHHHHhcCCcceeEEeeccchHHHhcCCCccC
Confidence            46788999999998544   567777777774433 33222 344445554444432  2222333457899999986 9


Q ss_pred             eEEEEecCCCCcccccCCCCCHHHHHHHHhh
Q psy7942         117 TVAIFKKFDEGRVNYEGPASDEAALRKFLST  147 (216)
Q Consensus       117 ~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~  147 (216)
                      +.+++.+ ++....+.|.. +.++|.+.|+.
T Consensus       104 ~~~iiD~-~G~i~~~~g~~-~~~~l~~~i~~  132 (134)
T d1zzoa1         104 AYAFVDP-HGNVDVVRGRM-SQDELTRRVTA  132 (134)
T ss_dssp             EEEEECT-TCCEEEEESCC-CHHHHHHHHHH
T ss_pred             eEEEECC-CCeEEEEECCC-CHHHHHHHHHh
Confidence            9999875 33223347888 88889888865

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=95.44  E-value=0.016  Score=38.88  Aligned_cols=58  Identities=12%  Similarity=0.125  Sum_probs=44.5

Q ss_pred             eeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         153 VVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       153 v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      |.++|++++.......-.+.++.|+.++.+.+......+.++++++.++..++.+|..
T Consensus         1 v~el~d~~f~~~v~~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d   58 (104)
T d1fb6a_           1 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTD   58 (104)
T ss_dssp             CEECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETT
T ss_pred             CeECchhhHHHHHHcCCCcEEEEEEcCccCCccccCchhHHHHHhhcCccceeEEecc
Confidence            4689999998755433234455688888888899999999999999999888776643

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.39  E-value=0.017  Score=39.89  Aligned_cols=59  Identities=17%  Similarity=0.178  Sum_probs=48.1

Q ss_pred             CceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccC-ceEEEEcCCC
Q psy7942         151 PLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFRE-KEEQDEDDDQ  210 (216)
Q Consensus       151 P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~-~~~f~~~d~~  210 (216)
                      +.|.+++++++..+..++ +..++.|+.++.+...++...+.++|+.+++ ++.+..+|..
T Consensus        10 s~v~~lt~~~f~~~i~~~-~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~   69 (119)
T d2b5ea4          10 SAVVKLATDSFNEYIQSH-DLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCT   69 (119)
T ss_dssp             SSCEECCTTTHHHHHTTC-SEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETT
T ss_pred             CccEEcCHHHHHHHHhcC-CeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeecc
Confidence            367899999999888765 4456668888888889999999999999986 4888887754

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=94.88  E-value=0.026  Score=38.01  Aligned_cols=58  Identities=14%  Similarity=0.149  Sum_probs=44.2

Q ss_pred             eeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         153 VVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       153 v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      ++.+|.+++.+.....-++.++.|+.+.++.+..+...+.++++++.+++.++.+|..
T Consensus         3 ~~~i~~~~f~~~v~~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d   60 (107)
T d1dbya_           3 AGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTD   60 (107)
T ss_dssp             CEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETT
T ss_pred             ceEecHHHHHHHHHhCCCcEEEEEECCCCCCccccChHHHHHHHhhcccceEEEEecc
Confidence            4678888987654433234455688888888899999999999999999888777654

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.63  E-value=0.028  Score=39.83  Aligned_cols=64  Identities=14%  Similarity=0.188  Sum_probs=48.9

Q ss_pred             CCceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccC---ceEEEEcCCCCCc
Q psy7942         150 LPLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFRE---KEEQDEDDDQPKR  213 (216)
Q Consensus       150 ~P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~---~~~f~~~d~~~~~  213 (216)
                      -+.|.+++..|+..+....-...++.|+.++++.+.++...+.++|+.|++   .+.++.+|..+..
T Consensus        11 ~~~V~~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~~~~   77 (140)
T d2b5ea1          11 DSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEND   77 (140)
T ss_dssp             SCSEEEECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCC
T ss_pred             CCCcEEecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeeccchh
Confidence            457899999999887643323446678888888889999999999999875   4677777765543

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.55  E-value=0.12  Score=36.98  Aligned_cols=93  Identities=11%  Similarity=0.122  Sum_probs=52.4

Q ss_pred             HHHhHhCCCeEEEEEecCCChhHHH----HH--HHHHhhC-CCceEEecchhhHHHHhhhhccccceeeecc--cHHHHH
Q psy7942          39 IKAFIADSKVVVAGLFKDASSELAK----TF--NEIASKV-DDLVFDASSELAKTFNEIASKVDDLVFVTST--NADILA  109 (216)
Q Consensus        39 ~~~~~~~~~v~~V~f~~~~~~~~~~----~f--~~~A~~~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~t~--~~~v~~  109 (216)
                      ++...+.++.++|.|+.+||.....    .|  .++.+.+ .++.+.              +++     ...  .+.+++
T Consensus        35 ~~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~fV~~--------------~v~-----~~~~e~~~~~~   95 (147)
T d2dlxa1          35 KECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFW--------------QVY-----HDSEEGQRYIQ   95 (147)
T ss_dssp             HHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEE--------------EEE-----SSSHHHHHHHH
T ss_pred             HHHHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhheeEe--------------eec-----ccchhhhhhhh
Confidence            3445567999999999998742211    12  1112212 233333              122     222  245788


Q ss_pred             hcCCCC-CeEEEEecCCCCcccccCCCCCHHH----HHHHHhhcCCC
Q psy7942         110 EYSVDD-DTVAIFKKFDEGRVNYEGPASDEAA----LRKFLSTQSLP  151 (216)
Q Consensus       110 ~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~----l~~fi~~~~~P  151 (216)
                      +|++.+ |+++++.+.++..+..-|.+ +.+.    |..|+..++.|
T Consensus        96 ~y~v~~~Pti~~idp~~ge~v~~~~~~-~~~~fl~~L~~fl~~~~~~  141 (147)
T d2dlxa1          96 FYKLGDFPYVSILDPRTGQKLVEWHQL-DVSSFLDQVTGFLGEHGQL  141 (147)
T ss_dssp             HHTCCSSSEEEEECTTTCCCCEEESSC-CHHHHHHHHHHHHHHTCSC
T ss_pred             heecCceeEEEEEeCCCCeEecccCCC-CHHHHHHHHHHHHhhCCCC
Confidence            999986 99999986544343333444 5444    56677766543

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=94.52  E-value=0.088  Score=36.85  Aligned_cols=103  Identities=13%  Similarity=0.109  Sum_probs=61.2

Q ss_pred             CCCeEEEEEecCCChhH---HHHHHHHHhhC--CCce-EEecc------hhhHHHHhhhhcccc--ceeeecccHHHHHh
Q psy7942          45 DSKVVVAGLFKDASSEL---AKTFNEIASKV--DDLV-FDASS------ELAKTFNEIASKVDD--LVFVTSTNADILAE  110 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~~~---~~~f~~~A~~~--~~~~-F~~~~------~~~~~~~~~~~~~~~--~~~~~t~~~~v~~~  110 (216)
                      .+++++|.|+..||...   .+.+.++.+++  .++. .+++.      .....+.+.......  .-.+...+.++++.
T Consensus        22 ~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~  101 (143)
T d2fy6a1          22 KDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQS  101 (143)
T ss_dssp             TTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHHHH
T ss_pred             CCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCcccccccccchHHHHH
Confidence            46889999999998644   45666666655  2332 22211      111122222222221  11113345678999


Q ss_pred             cCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHhhc
Q psy7942         111 YSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQ  148 (216)
Q Consensus       111 ~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~  148 (216)
                      |++.. |+++++-+...-...+.|.. +.+.|..+|++.
T Consensus       102 ~~v~~~P~~~liD~~G~i~~~~~G~~-~~~~~~~~l~~~  139 (143)
T d2fy6a1         102 LNISVYPSWALIGKDGDVQRIVKGSI-NEAQALALIRDP  139 (143)
T ss_dssp             TTCCSSSEEEEECTTSCEEEEEESCC-CHHHHHHHHHCT
T ss_pred             cCCCccCEEEEECCCCEEEEEEECCC-CHHHHHHHHHHH
Confidence            99986 99999875333234567998 899999999864

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=94.38  E-value=0.13  Score=36.07  Aligned_cols=100  Identities=14%  Similarity=0.166  Sum_probs=58.3

Q ss_pred             CCCeEEEEEecCCChhHHHHH---HHHHhhCCCceEEecc-hhhHHHHhhhhccccc--eeeecccHHHHHhcCCCC-Ce
Q psy7942          45 DSKVVVAGLFKDASSELAKTF---NEIASKVDDLVFDASS-ELAKTFNEIASKVDDL--VFVTSTNADILAEYSVDD-DT  117 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~~~~~~f---~~~A~~~~~~~F~~~~-~~~~~~~~~~~~~~~~--~~~~t~~~~v~~~~~v~~-p~  117 (216)
                      ++++++|.|+..||......+   .++...+..-..+++- .....+.+...+....  ......+..+.+.|++.. |+
T Consensus        30 kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~  109 (144)
T d1knga_          30 KGKVSLVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPE  109 (144)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSSCE
T ss_pred             CCCEEEEEeeccccccccccCchhhhhhhccCceeEEEEeeechHHHHHHHHHcCCccccccccccchhhhhcCccccce
Confidence            468999999999997665444   3333333222222222 2233333333333321  111224557899999987 99


Q ss_pred             EEEEecCCCCccc--ccCCCCCHHHHHHHHhh
Q psy7942         118 VAIFKKFDEGRVN--YEGPASDEAALRKFLST  147 (216)
Q Consensus       118 i~~~~~~de~~~~--y~G~~~~~~~l~~fi~~  147 (216)
                      .+++-+  ++.+.  +.|.. +.+.|.+.|..
T Consensus       110 ~~liD~--~G~i~~~~~G~~-~~~~l~~~i~~  138 (144)
T d1knga_         110 TFVVGR--EGTIVYKLVGPI-TPDNLRSVLLP  138 (144)
T ss_dssp             EEEECT--TSBEEEEEESCC-CHHHHHHTHHH
T ss_pred             EEEEcC--CCeEEEEEeCCC-CHHHHHHHHHH
Confidence            988875  33443  56888 88888887654

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=93.57  E-value=0.12  Score=34.42  Aligned_cols=58  Identities=9%  Similarity=0.216  Sum_probs=44.4

Q ss_pred             ceeeeCcchHHH-hhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         152 LVVEFNHETAQK-IFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       152 ~v~~~~~~~~~~-~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      -|.++|.+++.. +.+.+ ++.++.|+.++.+........+.++|+++.+++.+..+|..
T Consensus         3 ~v~~lt~~~f~~~v~~~~-~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d   61 (108)
T d2trxa_           3 KIIHLTDDSFDTDVLKAD-GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID   61 (108)
T ss_dssp             TEEECCTTTHHHHTTTCS-SEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETT
T ss_pred             CceECCHHHHHHHHHhCC-CcEEEEEECCCCCCccccCcHHHHHHHHhhcceeeeecccc
Confidence            477899999876 44444 34455588888888888999999999999999887766643

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.43  E-value=0.62  Score=31.95  Aligned_cols=102  Identities=12%  Similarity=0.123  Sum_probs=61.1

Q ss_pred             CCCeEEEEEecCCCh---hHHHHHHHHHhhCCCceEE-ec-chhhHHHHhhhhcccc-ceeeecccHHHHHhcCCCC-Ce
Q psy7942          45 DSKVVVAGLFKDASS---ELAKTFNEIASKVDDLVFD-AS-SELAKTFNEIASKVDD-LVFVTSTNADILAEYSVDD-DT  117 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~~~~~F~-~~-~~~~~~~~~~~~~~~~-~~~~~t~~~~v~~~~~v~~-p~  117 (216)
                      ..++++|.|+..||.   ...+.+.+++.++.++.+. ++ ........+.+++.+- .-.+...+..+++.|++.. |+
T Consensus        23 ~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~v~~~P~  102 (134)
T d1lu4a_          23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPA  102 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSSE
T ss_pred             CCCEEEEEEeecccCCceecchhHHHHhhhhccccccccccccchhhhhhhhhhhccccceeeCchHHHHHHcCCCcCCE
Confidence            467888889999984   4456677777667555442 21 2233334444444432 2222334567899999986 99


Q ss_pred             EEEEecCCCCccc--ccCCCCCHHHHHHHHhh
Q psy7942         118 VAIFKKFDEGRVN--YEGPASDEAALRKFLST  147 (216)
Q Consensus       118 i~~~~~~de~~~~--y~G~~~~~~~l~~fi~~  147 (216)
                      ++++.+.......  ..|.. +.++|.+-|..
T Consensus       103 ~~lid~~G~i~~v~~~~g~~-~~~~l~~~l~~  133 (134)
T d1lu4a_         103 FVFYRADGTSTFVNNPTAAM-SQDELSGRVAA  133 (134)
T ss_dssp             EEEECTTSCEEEECCSSSCC-CHHHHHHHHHH
T ss_pred             EEEEeCCCeEEEEeccCCCC-CHHHHHHHHHc
Confidence            9999853221222  24566 78888877653

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=93.32  E-value=0.089  Score=35.87  Aligned_cols=60  Identities=18%  Similarity=0.234  Sum_probs=46.2

Q ss_pred             cCCCceeeeC-cchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCC
Q psy7942         148 QSLPLVVEFN-HETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDD  209 (216)
Q Consensus       148 ~~~P~v~~~~-~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~  209 (216)
                      ...|.+.+++ .+.+..+...+ +..++.|...+.+....+...|.++|++|. ++.|+.+|.
T Consensus         5 ~~~p~vi~i~s~~~~~~~~~~~-~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~vd~   65 (113)
T d1r26a_           5 ARYPSVVDVYSVEQFRNIMSED-ILTVAWFTAVWCGPCKTIERPMEKIAYEFP-TVKFAKVDA   65 (113)
T ss_dssp             SCCSCCEEECCHHHHHHHHHSS-SCEEEEEECTTCHHHHHTHHHHHHHHHHCT-TSEEEEEET
T ss_pred             cCCCceEEeCCHHHHHHHHcCC-CeEEEEEECCCCccchhhceeccccccccc-ccccccccc
Confidence            3567888885 56788888766 344555888888888999999999999996 677877765

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=93.29  E-value=0.09  Score=35.73  Aligned_cols=60  Identities=18%  Similarity=0.148  Sum_probs=45.3

Q ss_pred             CCceeeeCcchHHHhhcc-CCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         150 LPLVVEFNHETAQKIFGG-EIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       150 ~P~v~~~~~~~~~~~~~~-~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      ...+.++|.+++...... +-++.++.|+.++.+........+.++|++|.+ +.|+.+|..
T Consensus         5 ~g~v~~~~~d~f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~-v~~~~vd~~   65 (112)
T d1f9ma_           5 VGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD-VIFLKLDCN   65 (112)
T ss_dssp             TTSEEEECTTTHHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEECS
T ss_pred             ceeeEEeCHHHHHHHHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhcccccc-ceeeccccc
Confidence            346889999999887764 223344458888888888899999999999985 667777653

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.96  E-value=0.12  Score=34.43  Aligned_cols=43  Identities=16%  Similarity=0.163  Sum_probs=32.5

Q ss_pred             ecccHHHHHhcCCCCCeEEEEecCCCCcccccCCCCCHHHHHHHHhhcC
Q psy7942         101 TSTNADILAEYSVDDDTVAIFKKFDEGRVNYEGPASDEAALRKFLSTQS  149 (216)
Q Consensus       101 ~t~~~~v~~~~~v~~p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~~~~  149 (216)
                      ...++++.++|++.-|.|.+    ++ .....|.+ +.+.|.++|+.-.
T Consensus        53 ~~~~~~l~~~y~~~VPvl~i----dg-~~~~~g~~-d~~~L~~~L~~l~   95 (100)
T d1wjka_          53 LPENSTWYERYKFDIPVFHL----NG-QFLMMHRV-NTSKLEKQLRKLS   95 (100)
T ss_dssp             SSTTHHHHHHSSSSCSEEEE----SS-SEEEESSC-CHHHHHHHHHSSS
T ss_pred             cccCHHHHHHhcccCCceee----cC-ceEEeCCC-CHHHHHHHHHHHh
Confidence            45678899999998897654    22 23467888 9999999998654

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=91.34  E-value=0.55  Score=34.57  Aligned_cols=89  Identities=9%  Similarity=0.219  Sum_probs=56.6

Q ss_pred             CCCeEEEEEecCCCh---hHHHHHHHHHhhC-CCceE-Eecc--------hhhHHHHhhhhccc-cceeeecccHHHHHh
Q psy7942          45 DSKVVVAGLFKDASS---ELAKTFNEIASKV-DDLVF-DASS--------ELAKTFNEIASKVD-DLVFVTSTNADILAE  110 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~---~~~~~f~~~A~~~-~~~~F-~~~~--------~~~~~~~~~~~~~~-~~~~~~t~~~~v~~~  110 (216)
                      ..++++|-|...||.   ...+.+.++++++ +++.| +++.        .........++.-. +.-.+...+..+++.
T Consensus        31 kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~~~~  110 (187)
T d2cvba1          31 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVAKA  110 (187)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHHHH
T ss_pred             CCCeEEEEEeCCCCccchhhhhhhhhhhhhccccceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhhhccc
Confidence            357888889999984   4467888888888 55443 3321        11222333333322 122224456679999


Q ss_pred             cCCCC-CeEEEEecCCCCcccccCCC
Q psy7942         111 YSVDD-DTVAIFKKFDEGRVNYEGPA  135 (216)
Q Consensus       111 ~~v~~-p~i~~~~~~de~~~~y~G~~  135 (216)
                      |++.. |+++++.+  ++.+.|.|.+
T Consensus       111 ~~v~~~P~~~liD~--~G~i~y~G~i  134 (187)
T d2cvba1         111 YRALRTPEVFLFDE--RRLLRYHGRV  134 (187)
T ss_dssp             TTCCEESEEEEECT--TCBEEEEECS
T ss_pred             ccccceeeEEEEcC--CCeEEEEeee
Confidence            99986 99999875  4578898876

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.28  E-value=0.19  Score=33.97  Aligned_cols=59  Identities=14%  Similarity=0.187  Sum_probs=46.0

Q ss_pred             CceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccC---ceEEEEcCCC
Q psy7942         151 PLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFRE---KEEQDEDDDQ  210 (216)
Q Consensus       151 P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~---~~~f~~~d~~  210 (216)
                      ..|..++.+++.++...+ +..++.|+..+.+.+..+...+.++++.+++   ++.++.+|..
T Consensus         7 ~~V~~l~~~~f~~~l~~~-k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~   68 (120)
T d1meka_           7 DHVLVLRKSNFAEALAAH-KYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDAT   68 (120)
T ss_dssp             TTEEECCTTTHHHHHHHC-SEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETT
T ss_pred             CCeEEcCHHHHHHHHhcC-CcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccc
Confidence            357789999999888766 4456668888888888899999999999865   3677666643

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=91.11  E-value=0.93  Score=30.98  Aligned_cols=99  Identities=14%  Similarity=0.213  Sum_probs=63.1

Q ss_pred             CCCeEEEEEecCCChhH---HHHHHHHHhhC--CCce-EEec-chhhHHHHhhhhcccc-ceeeecccHHHHHhcCCCC-
Q psy7942          45 DSKVVVAGLFKDASSEL---AKTFNEIASKV--DDLV-FDAS-SELAKTFNEIASKVDD-LVFVTSTNADILAEYSVDD-  115 (216)
Q Consensus        45 ~~~v~~V~f~~~~~~~~---~~~f~~~A~~~--~~~~-F~~~-~~~~~~~~~~~~~~~~-~~~~~t~~~~v~~~~~v~~-  115 (216)
                      .+++++|.|+.+||...   .+.+.++..++  ..+. ++++ .+....+.+.+.+.+- .-.+...+..+++.|++.. 
T Consensus        24 ~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  103 (137)
T d1st9a_          24 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVSPL  103 (137)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTCCSS
T ss_pred             CCCEEEEEEeeccccceeecccccccccccccccccccccccccchhhhHHHHHHHcCCCccccccccchhhhhhhcccc
Confidence            45788999999998543   45666666655  2333 3333 3455566665555432 2122334567889999987 


Q ss_pred             CeEEEEecCCCCccc--ccCCCCCHHHHHHHHh
Q psy7942         116 DTVAIFKKFDEGRVN--YEGPASDEAALRKFLS  146 (216)
Q Consensus       116 p~i~~~~~~de~~~~--y~G~~~~~~~l~~fi~  146 (216)
                      |+++++.+  ++.+.  +.|.. +.+.+.++++
T Consensus       104 P~~~liD~--~G~i~~~~~G~~-~~~~~~~~l~  133 (137)
T d1st9a_         104 PTTFLINP--EGKVVKVVTGTM-TESMIHDYMN  133 (137)
T ss_dssp             CEEEEECT--TSEEEEEEESCC-CHHHHHHHHH
T ss_pred             ceEEEECC--CCEEEEEEECCC-CHHHHHHHHH
Confidence            99998875  33444  46888 8888888765

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=90.94  E-value=0.17  Score=34.11  Aligned_cols=58  Identities=16%  Similarity=0.110  Sum_probs=41.8

Q ss_pred             eeeeC-cchHHHhhcc---CCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         153 VVEFN-HETAQKIFGG---EIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       153 v~~~~-~~~~~~~~~~---~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      |..++ .+++...+..   .-++.++.|...+.+....+...+.++|+++.+++.|+.+|..
T Consensus         4 v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d   65 (112)
T d1ep7a_           4 VIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVD   65 (112)
T ss_dssp             EEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETT
T ss_pred             EEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeecc
Confidence            45553 4455554532   1134455588888888899999999999999999999988864

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=90.64  E-value=0.32  Score=33.21  Aligned_cols=58  Identities=14%  Similarity=0.172  Sum_probs=42.4

Q ss_pred             ceeeeCcchHHHhhccCCcceEEEEEeCCccc------hhhhhHHHHHHHHhccCc-eEEEEcCCC
Q psy7942         152 LVVEFNHETAQKIFGGEIKSHLLVFFSKAAGH------YESHFEPVQTVAKDFREK-EEQDEDDDQ  210 (216)
Q Consensus       152 ~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~------~~~~~~~l~~vA~~~r~~-~~f~~~d~~  210 (216)
                      .|.++|.+|+.++.... +..++.|+.+++++      .......+..+|+.+.+. +.|..+|-.
T Consensus        12 ~V~~L~~~nf~~~l~~~-~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~   76 (124)
T d1a8ya1          12 RVINVNAKNYKNVFKKY-EVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSE   76 (124)
T ss_dssp             CCEECCTTTHHHHHHHC-SEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETT
T ss_pred             ccEECCHHHHHHHHHhC-CeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEee
Confidence            47899999999888765 44566688877664      344556777888887765 888877754

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=90.52  E-value=0.15  Score=34.16  Aligned_cols=50  Identities=14%  Similarity=0.200  Sum_probs=39.6

Q ss_pred             CceeeeCcchHHHhh-ccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCc
Q psy7942         151 PLVVEFNHETAQKIF-GGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREK  201 (216)
Q Consensus       151 P~v~~~~~~~~~~~~-~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~  201 (216)
                      +.|..++.+|+.++. +++ +..++.|+.+..++...+...+.++|+.+.+.
T Consensus         2 g~V~~lt~~nF~~~v~~~~-k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~   52 (116)
T d2djja1           2 GPVTVVVAKNYNEIVLDDT-KDVLIEFYAPWCGHCKALAPKYEELGALYAKS   52 (116)
T ss_dssp             CSSEECCTTTTTTSSSCTT-SCEEEEEECSSCTTHHHHHHHHHHHHHHHTTS
T ss_pred             cCcEEcccCCHHHHHhcCC-CCEEEEEEecccccccccchHHHHHHHHHhcc
Confidence            357889999998754 444 34566788888889999999999999998764

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.57  E-value=1.7  Score=29.64  Aligned_cols=41  Identities=20%  Similarity=0.307  Sum_probs=29.9

Q ss_pred             HHHHHhcCCCC-CeEEEEecCCCCcccccCCCCCHHHHHHHHh
Q psy7942         105 ADILAEYSVDD-DTVAIFKKFDEGRVNYEGPASDEAALRKFLS  146 (216)
Q Consensus       105 ~~v~~~~~v~~-p~i~~~~~~de~~~~y~G~~~~~~~l~~fi~  146 (216)
                      ++++++|++.. |++++.+......+.|.|-. .-..+..||.
T Consensus        68 ~~~~~~~~ver~Ps~~i~~~g~~~gIrF~GiP-~GhEf~Slil  109 (119)
T d1a8la1          68 KELAKRYRIDRAPATTITQDGKDFGVRYFGLP-AGHEFAAFLE  109 (119)
T ss_dssp             HHHHHHTTCCSSSEEEEEETTBCCSEEEESCC-CTTHHHHHHH
T ss_pred             hhHHHhhccccCceEEEecCCcccceEEEecc-CchhHHHHHH
Confidence            56789999985 99999986444458899866 4455666654

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=89.57  E-value=0.32  Score=32.76  Aligned_cols=58  Identities=7%  Similarity=-0.005  Sum_probs=46.0

Q ss_pred             eeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         153 VVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       153 v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      +...+.+.+......+ .+.++.|..+++++...+...+.++++++..++.++.+|..+
T Consensus        11 ~~~~t~~~~~~~i~~~-~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~   68 (115)
T d1zmaa1          11 LEVTTVVRAQEALDKK-ETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPS   68 (115)
T ss_dssp             SEECCHHHHHHHHHTT-CCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGG
T ss_pred             eeeCCHHHHHHHHhcC-CCEEEEEcCCCCccHHHHHHHHHHHHHHhhhhhhhheeeccc
Confidence            4556667777777766 455667888888999999999999999999999898887543

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.04  E-value=0.52  Score=33.11  Aligned_cols=41  Identities=10%  Similarity=-0.104  Sum_probs=33.9

Q ss_pred             ceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         171 SHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       171 ~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      ..++.|..++++.+.++...+.++|++|.+++.|+.+|-..
T Consensus        24 ~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~   64 (137)
T d1qgva_          24 VVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITE   64 (137)
T ss_dssp             EEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTT
T ss_pred             EEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeeccc
Confidence            33445888898889999999999999999998887776543

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.86  E-value=0.38  Score=32.03  Aligned_cols=61  Identities=13%  Similarity=0.104  Sum_probs=43.2

Q ss_pred             CceeeeCc-chHHHhhcc-CCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCC
Q psy7942         151 PLVVEFNH-ETAQKIFGG-EIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQP  211 (216)
Q Consensus       151 P~v~~~~~-~~~~~~~~~-~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~  211 (216)
                      ..+.++.. +++...+.. +-++.++-|+.++.+........+.++|++|++++.++.+|...
T Consensus         5 ~~v~~i~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~   67 (111)
T d1xwaa_           5 AMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDE   67 (111)
T ss_dssp             CCEEECCSHHHHHHHHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTT
T ss_pred             CeEEEECCHHHHHHHHHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccceEEEEEEeec
Confidence            35566654 566554432 21333444888888888999999999999999998887776543

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.21  E-value=0.86  Score=31.16  Aligned_cols=23  Identities=13%  Similarity=-0.024  Sum_probs=18.5

Q ss_pred             HHHhHhCCCeEEEEEecCCChhH
Q psy7942          39 IKAFIADSKVVVAGLFKDASSEL   61 (216)
Q Consensus        39 ~~~~~~~~~v~~V~f~~~~~~~~   61 (216)
                      +....+++++++|.|+++||...
T Consensus        18 l~~A~~~~Kpvlv~F~a~wC~~C   40 (135)
T d1sena_          18 KKEAAASGLPLMVIIHKSWCGAC   40 (135)
T ss_dssp             HHHHHHHTCCEEEEEECTTCHHH
T ss_pred             HHHHHHcCCcEEEEEEecCCCCc
Confidence            55567789999999999998544

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.05  E-value=0.63  Score=30.94  Aligned_cols=56  Identities=11%  Similarity=0.093  Sum_probs=39.2

Q ss_pred             eee-CcchHHHhhcc-CCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         154 VEF-NHETAQKIFGG-EIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       154 ~~~-~~~~~~~~~~~-~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      ..+ |.+.+...+.. +-+..++.|+..+.+....+...+.++|++|.+ +.|+.+|..
T Consensus         4 ~~i~s~~~f~~~l~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~-~~f~~vd~d   61 (107)
T d1gh2a_           4 KPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ-AVFLEVDVH   61 (107)
T ss_dssp             EEECSGGGHHHHHHHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTT-SEEEEEETT
T ss_pred             EEcCCHHHHHHHHHhCCCCEEEEEEECCCCCCccccchhhhcccccccc-ccccccccc
Confidence            344 44566666553 212334458888888889999999999999985 778777654

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=84.95  E-value=0.42  Score=30.27  Aligned_cols=41  Identities=22%  Similarity=0.220  Sum_probs=34.3

Q ss_pred             eEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCCCC
Q psy7942         172 HLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQPK  212 (216)
Q Consensus       172 ~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~~~  212 (216)
                      .+.+|..++.++.......+.++|++|.+++.+..+|....
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~   44 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVD   44 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTC
T ss_pred             EEEEEECCCCcchHHHHHHHhhhcccccccccccccccccc
Confidence            35678888888889999999999999999998887776543

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.23  E-value=0.96  Score=30.64  Aligned_cols=52  Identities=10%  Similarity=-0.111  Sum_probs=35.4

Q ss_pred             cchHHHhhccCCcceEE-EEEeC-------CccchhhhhHHHHHHHHhccCceEEEEcCC
Q psy7942         158 HETAQKIFGGEIKSHLL-VFFSK-------AAGHYESHFEPVQTVAKDFREKEEQDEDDD  209 (216)
Q Consensus       158 ~~~~~~~~~~~~~~~ll-lf~~~-------~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~  209 (216)
                      .+.+..........+++ .|...       ..++.......+.++|+++++++.|+.+|.
T Consensus         9 ~~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv   68 (119)
T d1woua_           9 FEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQV   68 (119)
T ss_dssp             HHHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEEC
T ss_pred             HHHHHHHHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEEC
Confidence            34455554432223444 46643       567788999999999999999999987764

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=83.95  E-value=1.7  Score=29.23  Aligned_cols=56  Identities=9%  Similarity=-0.050  Sum_probs=39.3

Q ss_pred             CceeeeCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhcc---CceEEEEcCC
Q psy7942         151 PLVVEFNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFR---EKEEQDEDDD  209 (216)
Q Consensus       151 P~v~~~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r---~~~~f~~~d~  209 (216)
                      |-+.+|+++|+.++.... +..++.|+.+...+..+  ..+.++|+++.   ..+.+..+|-
T Consensus         2 ~g~v~L~~~nFd~~v~~~-~~~lV~Fya~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~   60 (122)
T d2c0ga2           2 TGCVDLDELSFEKTVERF-PYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGV   60 (122)
T ss_dssp             TTCEECCTTTHHHHHTTS-SEEEEEEEESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEE
T ss_pred             CceEEcChHhHHHHHhcC-CcEEEEEECCCCCcccC--HHHHHHHHHHHHhCCCeEEEeccc
Confidence            457899999999988765 44455699888766553  67777777653   3566666553

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=83.74  E-value=0.86  Score=29.74  Aligned_cols=56  Identities=18%  Similarity=0.081  Sum_probs=38.7

Q ss_pred             eCcchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHh----ccCceEEEEcCCCC
Q psy7942         156 FNHETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKD----FREKEEQDEDDDQP  211 (216)
Q Consensus       156 ~~~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~----~r~~~~f~~~d~~~  211 (216)
                      ++.++.+.+-..+.+..+++|...+.+........+.++|.+    +.+++.+..+|...
T Consensus         2 l~~~~~e~~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~   61 (107)
T d1a8la2           2 LMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE   61 (107)
T ss_dssp             CCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGG
T ss_pred             CCHHHHHHHHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEecccc
Confidence            555665555555533344458888888889999999999875    44568887777543

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=81.73  E-value=1.2  Score=28.93  Aligned_cols=51  Identities=12%  Similarity=0.106  Sum_probs=37.3

Q ss_pred             cchHHHhhccCCcceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         158 HETAQKIFGGEIKSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       158 ~~~~~~~~~~~~~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      .+.+..+..++ +..++.|+.++.+........+.++|++|.+ ..|+.+|..
T Consensus         8 ~~~f~~~i~~~-~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~-~~~~~vd~d   58 (103)
T d1syra_           8 QAEFDSIISQN-ELVIVDFFAEWCGPCKRIAPFYEECSKTYTK-MVFIKVDVD   58 (103)
T ss_dssp             HHHHHHHHHHC-SEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-SEEEEEETT
T ss_pred             HHHHHHHHhCC-CcEEEEEeCCcccCcccccccchhhhhcccc-eEEEeeccc
Confidence            44666666665 3445558888888888999999999999975 456666654

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.75  E-value=1.5  Score=28.62  Aligned_cols=57  Identities=12%  Similarity=0.045  Sum_probs=39.1

Q ss_pred             eeeeCc-chHHHhhccCC-cceEEEEEeCCccchhhhhHHHHHHHHhccCceEEEEcCCC
Q psy7942         153 VVEFNH-ETAQKIFGGEI-KSHLLVFFSKAAGHYESHFEPVQTVAKDFREKEEQDEDDDQ  210 (216)
Q Consensus       153 v~~~~~-~~~~~~~~~~~-~~~lllf~~~~~~~~~~~~~~l~~vA~~~r~~~~f~~~d~~  210 (216)
                      +.++++ +.+...+.... ++.++.|+.++.+........+.++++++.+. .|+.+|..
T Consensus         2 v~~i~s~~~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~~-~~~~vd~d   60 (105)
T d2ifqa1           2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNV-IFLEVDVD   60 (105)
T ss_dssp             CEEECSHHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTS-EEEEEETT
T ss_pred             eEEcCCHHHHHHHHHhCCCCEEEEEEEcCCccchhhhhhhhhhhccccccc-eeeecccc
Confidence            456643 55666665321 23444588888888899999999999999754 56666643