Psyllid ID: psy7970

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290
Protein Sequence
MGLGSQAADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVDQIEPRVGEGDGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGGPGIISEVQHTTDPAEEENAVALSPNTSAATLVEASTSGALMNNGSRDTSTSDIQKLQQQLQDIKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAVEKRILLY
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccEEEEEEEEEEEEccccccEEEcccccccHHHHHHHHHHHccccccccccccccEEEccccccccccccccccccccccccccccccccHHHcccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccEEEEcccccccHHHHccccccccccccccEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHcccccEEEccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccHHHcEEcccccccEEEcccccEEEcHHccHHHHHccHHHHEEHccccccccEEEcccccEEEEEcccccEccHHHHHHHHHcHHHHHHHHHHccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccEccccccEEEEcccccHHHHcHccccccccHcHHHHHEEcc
Coil and Loop (DISEMBL)
mglgsqaadkksSASIACFLagngadlsiknkkgqtpldlcpdpnlckaltkcykdkevdqieprvgegdgtedmvtldecricsdlkrdilfqpcghvaccsvcaprvkkclicrepvekRIKIEECMVCSLKKasvlfkpcyhmvACESCASLMKKCVQCRtqidhmhpmvvccggpgiisevqhttdpaeeenavalspntsaATLVEAStsgalmnngsrdtstSDIQKLQQQLQDikeqtmcpvCLDRLKNMIflcghgtcqmcgdrmsecpicRKAVEKRILLY
Flexible Loop (DISEMBL)
mglgsqaadkkssASIACFLAGNGADLSIKNKKGqtpldlcpdpNLCKALTkcykdkevdqieprvgegdgtedmvTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGGPGIISEVQHTTDPAEEENAVALSPNTSAATLVEASTSGALMNNGSRDTSTSDIQKLQQQLQDIKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAVEKRILLY
Low Complexity Region (SEG)
MGLGSQAADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVDQIEPRVGEGDGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGGPGIISEVQHTTDPAEEENAVALSPNTSAATLVEASTSGALMNNGSRDTSTSdiqklqqqlqdikEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAVEKRILLY
Disordered region (IsUnstruct)
***************IACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVDQIE**V****GTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGGPGIISEV*******************************************************IKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAVEKRIL**
Disordered Region (DISOPRED)
*************ASIACFLAGNGADLSI***************************************************CRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGGPGIISEVQ**********************************************************TMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAVEKRILLY
Disordered Region (DISEMBL)
*************ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVDQIEPRVGEGDGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGGPGIISEVQHTTDPAEEENAVALSPNTSAATLVEASTSGALMN******************QDIKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAVEKRILLY
Disordered Region (DISPRO)
********DKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDK*******************TLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGGP***********************************************STSDIQKLQQQLQDIKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAVEKRILLY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLGSQAADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVDQIEPRVGEGDGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGGPGIISEVQHTTDPAEEENAVALSPNTSAATLVEASTSGALMNNGSxxxxxxxxxxxxxxxxxxxxxTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAVEKRILLY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	290	2.2.26 [Sep-21-2011]
Q804S5	1030	E3 ubiquitin-protein liga	yes	N/A	0.986	0.277	0.621	1e-103
Q80SY4	1006	E3 ubiquitin-protein liga	yes	N/A	0.920	0.265	0.620	1e-100
Q86YT6	1006	E3 ubiquitin-protein liga	yes	N/A	0.920	0.265	0.620	1e-100
Q6GNY1	1011	E3 ubiquitin-protein liga	N/A	N/A	0.903	0.259	0.606	2e-99
Q9VUX2	1226	E3 ubiquitin-protein liga	yes	N/A	0.737	0.174	0.478	1e-62
Q96AX9	1013	E3 ubiquitin-protein liga	no	N/A	0.731	0.209	0.288	2e-23
Q5ZIJ9	954	E3 ubiquitin-protein liga	no	N/A	0.710	0.215	0.264	2e-19
Q68LP1	971	E3 ubiquitin-protein liga	no	N/A	0.424	0.126	0.303	1e-17
Q8R516	973	E3 ubiquitin-protein liga	no	N/A	0.424	0.126	0.296	1e-17
Q9SS90	489	E3 ubiquitin-protein liga	no	N/A	0.182	0.108	0.454	2e-07

>sp|Q804S5|MIB1_DANRE E3 ubiquitin-protein ligase mib1 OS=Danio rerio GN=mib1 PE=1 SV=1

 Score =  374 bits (959), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/296 (62%), Positives = 224/296 (75%), Gaps = 10/296 (3%)

Query: 1    MGLGSQAADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVD 60
            MGLG+Q A+KKS+ASIACFLA NGADL+I+NKKGQ+PLDLCPDP+LCKAL KC+K+K   
Sbjct: 739  MGLGTQGAEKKSAASIACFLAANGADLTIRNKKGQSPLDLCPDPSLCKALAKCHKEKTSG 798

Query: 61   QIEPRVGEGDGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVE 120
            Q+  R    +   +  TL+EC +CSD+KRD LF PCGH+A CS+C+PRVKKCLIC+E V+
Sbjct: 799  QVGSRSPSLNSNNE--TLEECMVCSDMKRDTLFGPCGHIATCSLCSPRVKKCLICKEQVQ 856

Query: 121  KRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGGPG 180
             R KIEEC+VCS KKA+VLF+PC HM ACE+CASLMKKCVQCR  ++   P V+CCGG G
Sbjct: 857  SRTKIEECVVCSDKKAAVLFQPCGHMCACENCASLMKKCVQCRAVVERRTPFVLCCGGKG 916

Query: 181  IISEVQHTTDPAEEENAVA------LSPNTSAATLVEASTSGALMNNGSRDTSTSDIQKL 234
             + +     D     N++A      L PN  A +    +   AL  +       +D+QKL
Sbjct: 917  -MEDATDDEDLTGGSNSMAGGSQDLLQPNNLALSWSSGNIP-ALQRDKDNTNVNADVQKL 974

Query: 235  QQQLQDIKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAVEKRILLY 290
            QQQLQDIKEQTMCPVCLDRLKNMIF+CGHGTCQ+CGDRMSECPICRKA+E+RILLY
Sbjct: 975  QQQLQDIKEQTMCPVCLDRLKNMIFMCGHGTCQLCGDRMSECPICRKAIERRILLY 1030

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors. It thereby participates in many processes regulated by the Notch signaling pathway, such as midline cell fate specification prior to germ layer formation, patterning of sensory cell differentiation in the ear, neurogenesis of the hindbrain and commitment to a secretory fate in the intestine. Essential for early embryonic development.
Danio rerio (taxid: 7955)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q80SY4|MIB1_MOUSE E3 ubiquitin-protein ligase MIB1 OS=Mus musculus GN=Mib1 PE=1 SV=1

 Score =  366 bits (940), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/290 (62%), Positives = 217/290 (74%), Gaps = 23/290 (7%)

Query: 1    MGLGSQAADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVD 60
            MGLG+Q A+KKS+ASIACFLA NGADLSI+NKKGQ+PLDLCPDP+LCKAL KC+K+K   
Sbjct: 740  MGLGTQGAEKKSAASIACFLAANGADLSIRNKKGQSPLDLCPDPSLCKALAKCHKEKVSG 799

Query: 61   QIEPRVGEGDGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVE 120
            Q+  R      + D  TL+EC +CSD+KRD LF PCGH+A CS+C+PRVKKCLIC+E V+
Sbjct: 800  QVGSR-SPSMISNDSETLEECMVCSDMKRDTLFGPCGHIATCSLCSPRVKKCLICKEQVQ 858

Query: 121  KRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGGPG 180
             R KIEEC+VCS KKA+VLF+PC HM ACE+CASLMKKCVQCR  ++   P + CCGG  
Sbjct: 859  SRTKIEECVVCSDKKAAVLFQPCGHMCACENCASLMKKCVQCRAVVERRVPFITCCGG-- 916

Query: 181  IISEVQHTTDPAEEENAVALSPNTSAATLVEASTSGALMNNGSRDTSTSDIQKLQQQLQD 240
                 + + DP++E               + +     L  +       +D+QKLQQQLQD
Sbjct: 917  -----KSSEDPSDE---------------ISSGNIPVLQKDKDNTNVNADVQKLQQQLQD 956

Query: 241  IKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAVEKRILLY 290
            IKEQTMCPVCLDRLKNMIFLCGHGTCQ+CGDRMSECPICRKA+E+RILLY
Sbjct: 957  IKEQTMCPVCLDRLKNMIFLCGHGTCQLCGDRMSECPICRKAIERRILLY 1006

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors. Mediates 'Lys-63'-linked polyubiquitination of TBK1, which probably participates in kinase activation (By similarity). Probably mediates ubiquitination and subsequent proteasomal degradation of DAPK1, thereby antagonizing anti-apoptotic effects of DAPK1 to promote TNF-induced apoptosis.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q86YT6|MIB1_HUMAN E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens GN=MIB1 PE=1 SV=1

 Score =  364 bits (934), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/290 (62%), Positives = 214/290 (73%), Gaps = 23/290 (7%)

Query: 1    MGLGSQAADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVD 60
            MGLG+Q A+KKS+ASIACFLA NGADLSI+NKKGQ+PLDLCPDPNLCKAL KC+K+K   
Sbjct: 740  MGLGTQGAEKKSAASIACFLAANGADLSIRNKKGQSPLDLCPDPNLCKALAKCHKEKVSG 799

Query: 61   QIEPRVGEGDGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVE 120
            Q+  R      + D  TL+EC +CSD+KRD LF PCGH+A CS+C+PRVKKCLIC+E V+
Sbjct: 800  QVGSR-SPSMISNDSETLEECMVCSDMKRDTLFGPCGHIATCSLCSPRVKKCLICKEQVQ 858

Query: 121  KRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGGPG 180
             R KIEEC+VCS KKA+VLF+PC HM ACE+CA+LMKKCVQCR  ++   P ++CCGG  
Sbjct: 859  SRTKIEECVVCSDKKAAVLFQPCGHMCACENCANLMKKCVQCRAVVERRVPFIMCCGG-- 916

Query: 181  IISEVQHTTDPAEEENAVALSPNTSAATLVEASTSGALMNNGSRDTSTSDIQKLQQQLQD 240
                 +  TD     N   L  +     +                   +D+QKLQQQLQD
Sbjct: 917  --KSSEDATDDISSGNIPVLQKDKDNTNV------------------NADVQKLQQQLQD 956

Query: 241  IKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAVEKRILLY 290
            IKEQTMCPVCLDRLKNMIFLCGHGTCQ+CGDRMSECPICRKA+E+RILLY
Sbjct: 957  IKEQTMCPVCLDRLKNMIFLCGHGTCQLCGDRMSECPICRKAIERRILLY 1006

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors. Probably mediates ubiquitination and subsequent proteasomal degradation of DAPK1, thereby antagonizing anti-apoptotic effects of DAPK1 to promote TNF-induced apoptosis (By similarity). Mediates 'Lys-63'-linked polyubiquitination of TBK1, which probably participates in kinase activation.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6GNY1|MIB1_XENLA E3 ubiquitin-protein ligase mib1 OS=Xenopus laevis GN=mib1 PE=2 SV=1

 Score =  362 bits (928), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 179/295 (60%), Positives = 216/295 (73%), Gaps = 33/295 (11%)

Query: 1    MGLGSQAADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVD 60
            MGLG+Q A+KKS+ASIACFLA NGADL+++NKKGQ+PLDLCPDPNLCK L KC+K+K   
Sbjct: 741  MGLGTQGAEKKSAASIACFLAANGADLAVRNKKGQSPLDLCPDPNLCKTLAKCHKEKSSG 800

Query: 61   QIEPRVGEGDGTEDMV-----TLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLIC 115
            Q+      G  +  M+     TL+EC +CSDLKRD LF PCGH+A CS+C+PRVKKCL+C
Sbjct: 801  QV------GSHSPSMINNDSETLEECMVCSDLKRDTLFGPCGHIATCSLCSPRVKKCLLC 854

Query: 116  REPVEKRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVC 175
            +E V+ R KIEEC+VCS KKA+VLF+PC HM ACE+CASLMKKCVQCR  ++   P V+C
Sbjct: 855  KEQVQSRTKIEECVVCSDKKAAVLFQPCGHMCACENCASLMKKCVQCRAVVERRVPFVMC 914

Query: 176  CGGPGIISEVQHTTDPAEEENAVALSPNTSAATLVEASTSGALMNNGSRDTSTSDIQKLQ 235
            C G G       T D A++               +      AL  +       +D+QKLQ
Sbjct: 915  CSGKG-------TEDVADD---------------IAGGNIPALQKDKDNTNVNADVQKLQ 952

Query: 236  QQLQDIKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAVEKRILLY 290
            QQLQDIKEQTMCPVCLDRLKNMIF+CGHGTCQ+CGDRMSECPICRKA+E+RILLY
Sbjct: 953  QQLQDIKEQTMCPVCLDRLKNMIFMCGHGTCQLCGDRMSECPICRKAIERRILLY 1007

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9VUX2|MIB_DROME E3 ubiquitin-protein ligase mind-bomb OS=Drosophila melanogaster GN=mib1 PE=1 SV=3

 Score =  239 bits (611), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 125/261 (47%), Positives = 159/261 (60%), Gaps = 47/261 (18%)

Query: 77   TLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKIEECMVCSLKKA 136
            +LDEC +CSD KRD +F+PCGHV+CC  CAPRVKKCLICRE V  R KI+EC+VCS ++A
Sbjct: 966  SLDECLVCSDAKRDTVFKPCGHVSCCETCAPRVKKCLICRETVSSREKIDECLVCSDRRA 1025

Query: 137  SVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGGPGIISEVQHTTD------ 190
            +V F+PC HMVACE C++LMKKCV CRTQID +    +CCGG G   +V           
Sbjct: 1026 AVFFRPCGHMVACEHCSALMKKCVLCRTQIDEILSFSLCCGGSGRPEKVSVAAGAMATVG 1085

Query: 191  -PAEEENAV--------------ALSPNTSAATLVEASTS------------------GA 217
             P  ++  +              +++ N +  T V  S++                    
Sbjct: 1086 LPLPDDRFMEAAAAAACANASGHSVAMNNTVVTPVAGSSNQLNSQNNLLAAAAASSNVSN 1145

Query: 218  LMNNGSRDTSTSDIQKLQ--------QQLQDIKEQTMCPVCLDRLKNMIFLCGHGTCQMC 269
            L   G+   + S++   Q        QQLQDIKEQTMCPVC DR+KNM+FLCGHGTCQMC
Sbjct: 1146 LSAAGNAMVAPSNVNNFQMDDVQKLKQQLQDIKEQTMCPVCFDRIKNMVFLCGHGTCQMC 1205

Query: 270  GDRMSECPICRKAVEKRILLY 290
            GD++  CPICRK VEKRILL+
Sbjct: 1206 GDQIEGCPICRKTVEKRILLF 1226

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta (Dl) and Serrate (Ser) receptors, which act as ligands of Notch proteins. Positively regulates the Notch signaling by ubiquitinating the intracellular domain of Dl and Ser, leading to endocytosis of Dl and Ser receptors. Regulates a subset of Notch signaling events, including wing margin specification, leg segmentation and vein determination, that are distinct from those events requiring neuralize (neur) activity. Also modulates lateral inhibition, a neur- and Dl-dependent signaling event, suggesting a distinct but partially complementary function with neur.

Drosophila melanogaster (taxid: 7227)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q96AX9|MIB2_HUMAN E3 ubiquitin-protein ligase MIB2 OS=Homo sapiens GN=MIB2 PE=1 SV=3

 Score =  109 bits (273), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 82/284 (28%), Positives = 116/284 (40%), Gaps = 72/284 (25%)

Query: 7    AADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVDQIEPRV 66
            +A+    A++ACFLA  GAD+S  N +G++PLDL  +  + KAL  C +       E + 
Sbjct: 801  SAELTVGAAVACFLALEGADVSYTNHRGRSPLDLAAEGRVLKALQGCAQRFR----ERQA 856

Query: 67   GEGDGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKIE 126
            G G       TL      ++L          HV      AP  +                
Sbjct: 857  GGGAAPGPRQTLGTPNTVTNL----------HVGA----APGPEAA-------------- 888

Query: 127  ECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGGPGIISEVQ 186
            EC+VCS     VLF PC H   CE CA  MKKC++C+                     V 
Sbjct: 889  ECLVCSELALLVLFSPCQHRTVCEECARRMKKCIRCQVV-------------------VS 929

Query: 187  HTTDPAEEENAVALSPNTSAATLVEASTSGALMNNGSRDTSTSDIQKLQQQLQDIKEQTM 246
                P   E A A         LVE                     +LQ + + ++E+  
Sbjct: 930  KKLRPDGSEVASAAPAPGPPRQLVE---------------------ELQSRYRQMEERIT 968

Query: 247  CPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAVEKRILLY 290
            CP+C+D    ++F CGHG C  CG  +S CPICR+ +  RI ++
Sbjct: 969  CPICIDSHIRLVFQCGHGACAPCGSALSACPICRQPIRDRIQIF 1012

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5ZIJ9|MIB2_CHICK E3 ubiquitin-protein ligase MIB2 OS=Gallus gallus GN=MIB2 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 123/280 (43%), Gaps = 74/280 (26%)

Query: 13  SASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVDQIEPRVGEGDGT 72
             +IAC+LA  GAD++  N +G++PLDL  D  + + + K +  K  +Q           
Sbjct: 746 GTAIACYLAQEGADINYANHRGKSPLDLITDGRIVQ-IIKDFSQKFREQ----------- 793

Query: 73  EDMVTLDECRICSDLKRDILFQP--CGHVACCSVCAPRVKKCLICREPVEKRIKIEECMV 130
              V+ D   I   L+R +   P    +++  SV  P                   EC+V
Sbjct: 794 --QVSSDCSAITCSLRR-VHTTPNTMTNLSVSSVAVP------------------TECLV 832

Query: 131 CSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGGPGIISEVQHTTD 190
           CS     + F PC H + CE C+  MKKC++C+  I                     T  
Sbjct: 833 CSELALLIHFFPCQHSIVCEECSRRMKKCIKCQVTI---------------------TKK 871

Query: 191 PAEEENAVALSPNTSAATLVEASTSGALMNNGSRDTSTSDIQKLQQQLQDIKEQTMCPVC 250
              +   V  SP++      E++    LM            ++LQ + + ++E+  CP+C
Sbjct: 872 LKRDSTEVECSPSS------ESTDQRKLM------------EELQNRYRQMEERITCPIC 913

Query: 251 LDRLKNMIFLCGHGTCQMCGDRMSECPICRKAVEKRILLY 290
           +D    ++F CGHG+C  C   ++ CPICR+A+ +RI ++
Sbjct: 914 IDDQIKLVFQCGHGSCPDCSTALTVCPICRQAIRERIQIF 953

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors.

Gallus gallus (taxid: 9031)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q68LP1|MIB2_RAT E3 ubiquitin-protein ligase MIB2 OS=Rattus norvegicus GN=Mib2 PE=2 SV=2

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 50/165 (30%), Positives = 76/165 (46%), Gaps = 42/165 (25%)

Query: 127 ECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDH-MHPMVVCCGGPGIISEV 185
           EC+VCS     VLF PC H   CE CA  MKKC++C+  I   + P      G  +++ +
Sbjct: 847 ECLVCSELALLVLFSPCQHRTVCEECARRMKKCIRCQVIISKKLRP-----DGSEVVNAI 901

Query: 186 QHTTDPAEEENAVALSPNTSAATLVEASTSGALMNNGSRDTSTSDIQKLQQQLQDIKEQT 245
           Q    P +               LVE                     +LQ + + ++E+ 
Sbjct: 902 QVPGPPRQ---------------LVE---------------------ELQSRYRQMEERI 925

Query: 246 MCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAVEKRILLY 290
            CP+C+D    ++F CGHG C  CG  ++ CPICR+ +  RI ++
Sbjct: 926 TCPICIDSHIRLVFQCGHGACAPCGAALNACPICRQPIRDRIQIF 970

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8R516|MIB2_MOUSE E3 ubiquitin-protein ligase MIB2 OS=Mus musculus GN=Mib2 PE=1 SV=2

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 42/165 (25%)

Query: 127 ECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDH-MHPMVVCCGGPGIISEV 185
           EC+VCS     +LF PC H   CE CA  MKKC++C+  I   + P      G  +++ +
Sbjct: 849 ECLVCSELALLILFSPCQHRTVCEECARRMKKCIRCQVVISKKLRP-----DGSEVVNAI 903

Query: 186 QHTTDPAEEENAVALSPNTSAATLVEASTSGALMNNGSRDTSTSDIQKLQQQLQDIKEQT 245
           Q    P +               LVE                     +LQ + + ++E+ 
Sbjct: 904 QVPGPPRQ---------------LVE---------------------ELQSRYRQMEERI 927

Query: 246 MCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAVEKRILLY 290
            CP+C+D    ++F CGHG C  CG  ++ CPICR+ +  RI ++
Sbjct: 928 TCPICIDSHIRLVFQCGHGACAPCGAALNACPICRQPIRDRIQIF 972

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SS90|RGLG1_ARATH E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 33/55 (60%)

Query: 236 QQLQDIKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAVEKRILLY 290
           +Q+    +  +CP+CL   KNM F CGH TC  CG  +  CPICR  ++ RI LY
Sbjct: 435 KQMSSADDIQLCPICLSNPKNMAFGCGHQTCCECGPDLKVCPICRAPIQTRIKLY 489

E3 ubiquitin-protein ligase that mediates the formation of 'Lys-63'-linked multiubiquitin chains. Regulates apical dominance by acting on the auxin transport proteins abundance.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
242024098	398	mind bomb, putative [Pediculus humanus c	0.968	0.706	0.762	1e-120
91083325	1026	PREDICTED: similar to mindbomb homolog 1	0.962	0.271	0.705	1e-110
383864727	399	PREDICTED: E3 ubiquitin-protein ligase M	0.962	0.699	0.686	1e-109
270007755	404	hypothetical protein TcasGA2_TC014452 [T	0.962	0.690	0.705	1e-109
340727843	402	PREDICTED: e3 ubiquitin-protein ligase M	0.958	0.691	0.676	1e-108
350405567	402	PREDICTED: E3 ubiquitin-protein ligase M	0.958	0.691	0.676	1e-108
332025773	400	E3 ubiquitin-protein ligase MIB1 [Acromy	0.972	0.705	0.690	1e-107
322779174	400	hypothetical protein SINV_00620 [Solenop	0.941	0.682	0.68	1e-107
328780820	402	PREDICTED: e3 ubiquitin-protein ligase M	0.972	0.701	0.675	1e-107
345480050	1058	PREDICTED: E3 ubiquitin-protein ligase m	0.965	0.264	0.605	1e-106

>gi|242024098|ref|XP_002432467.1| mind bomb, putative [Pediculus humanus corporis] gi|212517900|gb|EEB19729.1| mind bomb, putative [Pediculus humanus corporis]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/290 (76%), Positives = 236/290 (81%), Gaps = 9/290 (3%)

Query: 1   MGLGSQAADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVD 60
           M LGSQ ADKKSSASIACFLAGNGADL++KNKKGQTPLDLCPDPNLCKAL KC+KDK  D
Sbjct: 118 MNLGSQGADKKSSASIACFLAGNGADLTLKNKKGQTPLDLCPDPNLCKALAKCHKDKNTD 177

Query: 61  QIEPRVGEGDGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVE 120
           QIEP     D   +  TLDEC +CSDLKRDILF PCGHVACCSVCAPRV+KCLICREPV 
Sbjct: 178 QIEP--PSQDIVGENSTLDECLVCSDLKRDILFMPCGHVACCSVCAPRVRKCLICREPVR 235

Query: 121 KRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGGPG 180
            R+KIEEC+VCS KKASVLF+PC H+ ACESCA LMKKCVQCRTQI+ M P VVCCGG G
Sbjct: 236 GRVKIEECVVCSDKKASVLFRPCTHLCACESCAPLMKKCVQCRTQIEKMVPFVVCCGGTG 295

Query: 181 IISEVQHTTDPAEEENAVALSPNTSAATLVEASTSGALMNNGSRDTSTSDIQKLQQQLQD 240
            IS      +  EE    A+S        VE    GALMNNGSRD S++DIQKLQQQLQD
Sbjct: 296 AISAKADVENIEEETTNAAMSN-------VEQQIGGALMNNGSRDISSNDIQKLQQQLQD 348

Query: 241 IKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAVEKRILLY 290
           IKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRK VEKRILLY
Sbjct: 349 IKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKPVEKRILLY 398

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083325|ref|XP_974870.1| PREDICTED: similar to mindbomb homolog 1 [Tribolium castaneum]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/292 (70%), Positives = 232/292 (79%), Gaps = 13/292 (4%)

Query: 1    MGLGSQAADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVD 60
            MGLG+Q  DKKSSASIACFLAGNGADL +KNKKGQTPLDLCPDPNLCK L KC+KDK+  
Sbjct: 746  MGLGTQGCDKKSSASIACFLAGNGADLDLKNKKGQTPLDLCPDPNLCKTLKKCHKDKQSG 805

Query: 61   QIEPRVGEGDGTEDMV-TLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPV 119
            +++    + + + ++  TLDEC +CSD KRD+LFQPCGHV CCS+C PRVKKCLICRE V
Sbjct: 806  EMDMGPNQNNQSTNITSTLDECLVCSDAKRDMLFQPCGHVTCCSLCGPRVKKCLICRESV 865

Query: 120  EKRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGGP 179
              RIKIEEC+VCS KK++VLFKPC HM ACESC+ +MKKCV CR QI+ M P+ VC GG 
Sbjct: 866  STRIKIEECLVCSDKKSTVLFKPCGHMCACESCSQIMKKCVLCRAQIELMVPLTVCSGGL 925

Query: 180  GIISEVQHTTDPAEEENAVALSPNTSAATLVEASTSGALMNNGSRDTS-TSDIQKLQQQL 238
            G ISEV+     AEEE      P+TS A        G LMNNG RDTS  SDIQKLQQQL
Sbjct: 926  GTISEVKAD---AEEEP----KPSTSDA----GQNQGPLMNNGGRDTSNNSDIQKLQQQL 974

Query: 239  QDIKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAVEKRILLY 290
            QDIKEQTMCPVCLDRLKNMIFLCGHG CQMCGD+M+ECPICRKAVEKRILLY
Sbjct: 975  QDIKEQTMCPVCLDRLKNMIFLCGHGLCQMCGDQMTECPICRKAVEKRILLY 1026

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864727|ref|XP_003707829.1| PREDICTED: E3 ubiquitin-protein ligase MIB1-like [Megachile rotundata]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/293 (68%), Positives = 230/293 (78%), Gaps = 14/293 (4%)

Query: 1   MGLGSQAADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVD 60
           MGLG+Q  DKKSS+ IACFLA +GADL +KNKKGQTPLDLCPDPNLCK LT C+KD+E  
Sbjct: 118 MGLGAQGQDKKSSSFIACFLAAHGADLELKNKKGQTPLDLCPDPNLCKTLTTCHKDRESH 177

Query: 61  QIEPRVGEGDGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVE 120
            IE     G       T+DEC +CSD KR++LF PCGHVACC+VCAPRVKKCLICRE V 
Sbjct: 178 DIETAAPSG-------TIDECLVCSDGKREMLFTPCGHVACCNVCAPRVKKCLICRENVL 230

Query: 121 KRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGGPG 180
            R KIEEC+VCS +KAS+LF+PC HM ACESCA+LMKKCVQCR+QI HM P+ +CCGG G
Sbjct: 231 SRTKIEECVVCSDRKASMLFRPCGHMCACESCATLMKKCVQCRSQIQHMVPLSMCCGGGG 290

Query: 181 IISEVQHTTDPAEEENAVALSPNTSAATLVEASTSGA---LMNNGSRDTSTSDIQKLQQQ 237
            ++ V+ T         ++   N +    V+ ++ G    LMNNGSRDTS SDIQKLQQQ
Sbjct: 291 NVTYVKGTN----ASGTISDVKNDAEEESVQQNSGGGEALLMNNGSRDTSHSDIQKLQQQ 346

Query: 238 LQDIKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAVEKRILLY 290
           LQDIKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAV+KRILLY
Sbjct: 347 LQDIKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAVDKRILLY 399

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270007755|gb|EFA04203.1| hypothetical protein TcasGA2_TC014452 [Tribolium castaneum]

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/292 (70%), Positives = 232/292 (79%), Gaps = 13/292 (4%)

Query: 1   MGLGSQAADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVD 60
           MGLG+Q  DKKSSASIACFLAGNGADL +KNKKGQTPLDLCPDPNLCK L KC+KDK+  
Sbjct: 124 MGLGTQGCDKKSSASIACFLAGNGADLDLKNKKGQTPLDLCPDPNLCKTLKKCHKDKQSG 183

Query: 61  QIEPRVGEGDGTEDMV-TLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPV 119
           +++    + + + ++  TLDEC +CSD KRD+LFQPCGHV CCS+C PRVKKCLICRE V
Sbjct: 184 EMDMGPNQNNQSTNITSTLDECLVCSDAKRDMLFQPCGHVTCCSLCGPRVKKCLICRESV 243

Query: 120 EKRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGGP 179
             RIKIEEC+VCS KK++VLFKPC HM ACESC+ +MKKCV CR QI+ M P+ VC GG 
Sbjct: 244 STRIKIEECLVCSDKKSTVLFKPCGHMCACESCSQIMKKCVLCRAQIELMVPLTVCSGGL 303

Query: 180 GIISEVQHTTDPAEEENAVALSPNTSAATLVEASTSGALMNNGSRDTS-TSDIQKLQQQL 238
           G ISEV+     AEEE      P+TS A        G LMNNG RDTS  SDIQKLQQQL
Sbjct: 304 GTISEVKAD---AEEEP----KPSTSDA----GQNQGPLMNNGGRDTSNNSDIQKLQQQL 352

Query: 239 QDIKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAVEKRILLY 290
           QDIKEQTMCPVCLDRLKNMIFLCGHG CQMCGD+M+ECPICRKAVEKRILLY
Sbjct: 353 QDIKEQTMCPVCLDRLKNMIFLCGHGLCQMCGDQMTECPICRKAVEKRILLY 404

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727843|ref|XP_003402244.1| PREDICTED: e3 ubiquitin-protein ligase MIB1-like [Bombus terrestris]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/297 (67%), Positives = 227/297 (76%), Gaps = 19/297 (6%)

Query: 1   MGLGSQAADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVD 60
           MGLG+Q  DKKSS+ IACFLA +GADL +KNKKGQTPLDLCPDPNLCK LT C+KD+E D
Sbjct: 118 MGLGAQGQDKKSSSFIACFLAAHGADLELKNKKGQTPLDLCPDPNLCKTLTTCHKDRESD 177

Query: 61  QIEPRVGEGDGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVE 120
            IEP            T+DEC +CSD KR++LF PCGHVACC+ CAPRVKKCL+CRE V 
Sbjct: 178 NIEPAAPSA-------TIDECLVCSDGKREMLFSPCGHVACCNACAPRVKKCLLCRENVL 230

Query: 121 KRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGGPG 180
            R KIEEC+VCS +KASVLF+PC HM ACESCA+LMKKCVQCR QI HM P+ +CCG  G
Sbjct: 231 SRTKIEECVVCSDRKASVLFRPCGHMCACESCAALMKKCVQCRAQIQHMLPLSICCGRGG 290

Query: 181 IISEVQHT-------TDPAEEENAVALSPNTSAATLVEASTSGALMNNGSRDTSTSDIQK 233
            ++ V+ T       TD   ++    LS   +      +     LMNNGSRDTS SDIQK
Sbjct: 291 DVTYVKATNASGATITDVKSDQEEELLSQQNTG-----SGGETLLMNNGSRDTSHSDIQK 345

Query: 234 LQQQLQDIKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAVEKRILLY 290
           LQQQLQDIKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAV+KRILLY
Sbjct: 346 LQQQLQDIKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAVDKRILLY 402

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350405567|ref|XP_003487480.1| PREDICTED: E3 ubiquitin-protein ligase MIB1-like [Bombus impatiens]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/297 (67%), Positives = 227/297 (76%), Gaps = 19/297 (6%)

Query: 1   MGLGSQAADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVD 60
           MGLG+Q  DKKSS+ IACFLA +GADL +KNKKGQTPLDLCPDPNLCK LT C+KD+E D
Sbjct: 118 MGLGAQGQDKKSSSFIACFLAAHGADLELKNKKGQTPLDLCPDPNLCKTLTTCHKDRESD 177

Query: 61  QIEPRVGEGDGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVE 120
            IEP            T+DEC +CSD KR++LF PCGHVACC+ CAPRVKKCLICRE V 
Sbjct: 178 NIEPAAPSA-------TIDECLVCSDGKREMLFSPCGHVACCNACAPRVKKCLICRENVL 230

Query: 121 KRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGGPG 180
            R KIEEC+VCS +KA+VLF+PC HM ACESCA+LMKKCVQCR QI HM P+ +CCG  G
Sbjct: 231 SRTKIEECVVCSDRKANVLFRPCGHMCACESCAALMKKCVQCRAQIQHMLPLSICCGRGG 290

Query: 181 IISEVQHT-------TDPAEEENAVALSPNTSAATLVEASTSGALMNNGSRDTSTSDIQK 233
            ++ V+ T       TD   ++    LS   +      +     LMNNGSRDTS SDIQK
Sbjct: 291 DVTYVKATNASGGTITDVKSDQEEELLSQQNTG-----SGGETLLMNNGSRDTSHSDIQK 345

Query: 234 LQQQLQDIKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAVEKRILLY 290
           LQQQLQDIKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAV+KRILLY
Sbjct: 346 LQQQLQDIKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAVDKRILLY 402

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025773|gb|EGI65930.1| E3 ubiquitin-protein ligase MIB1 [Acromyrmex echinatior]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/291 (69%), Positives = 225/291 (77%), Gaps = 9/291 (3%)

Query: 1   MGLGSQAADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVD 60
           MGLG+Q  DKKSS+ IACFLA +GADL +KNKKGQTPLDLCPDPNLCK LT C+KDKE  
Sbjct: 118 MGLGTQGQDKKSSSFIACFLAAHGADLELKNKKGQTPLDLCPDPNLCKTLTTCHKDKESH 177

Query: 61  QIEPRVGEGDGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVE 120
            IE  V           +DEC +CSD KR++LF PCGHVACC+VCAPRVKKCLICRE V 
Sbjct: 178 DIETIVPSA-------AIDECLVCSDGKREMLFSPCGHVACCNVCAPRVKKCLICRENVL 230

Query: 121 KRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGGPG 180
            R+KIEEC+VCS +KA VLF+PC HM ACESCA+LMKKCVQCR QI HM P+ VCCGG G
Sbjct: 231 SRVKIEECVVCSDRKAGVLFRPCGHMCACESCAALMKKCVQCRAQIQHMVPLSVCCGGGG 290

Query: 181 IISEVQH-TTDPAEEENAVALSPNTSAATLVEASTSGALMNNGSRDTSTSDIQKLQQQLQ 239
            ++ V+         E  V L   ++ +       +  LMNNGSRDTS SDIQKLQQQLQ
Sbjct: 291 DVTYVKGCNASGTISEVKVDLEEESTPSNNTGVGEA-LLMNNGSRDTSHSDIQKLQQQLQ 349

Query: 240 DIKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAVEKRILLY 290
           DIKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAV+KRILLY
Sbjct: 350 DIKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAVDKRILLY 400

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322779174|gb|EFZ09510.1| hypothetical protein SINV_00620 [Solenopsis invicta]

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/300 (68%), Positives = 226/300 (75%), Gaps = 27/300 (9%)

Query: 1   MGLGSQAADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVD 60
           MGLG+Q  DKKSS+ IACFLA +GADL +KNKKGQTPLDLCPDPNLCK LT C+KDKE  
Sbjct: 118 MGLGTQGQDKKSSSFIACFLAAHGADLELKNKKGQTPLDLCPDPNLCKTLTTCHKDKESH 177

Query: 61  QIEPRVGEGDGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVE 120
            IE  V           +DEC +CSD KR++LF PCGHVACC+ CAPRVKKCLICRE V 
Sbjct: 178 DIEAIVPSA-------AIDECLVCSDGKREMLFSPCGHVACCNACAPRVKKCLICRENVL 230

Query: 121 KRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGGPG 180
            R+KIEEC+VCS +KA VLF+PC HM ACESCA+LMKKCVQCR+QI HM P+ VCCGG G
Sbjct: 231 SRVKIEECVVCSDRKAGVLFRPCGHMCACESCAALMKKCVQCRSQILHMVPLSVCCGGGG 290

Query: 181 IISEVQH----------TTDPAEEENAVALSPNTSAATLVEASTSGALMNNGSRDTSTSD 230
            ++ V+             DP EE      S NT A           LMNNGSRDTS SD
Sbjct: 291 DVTYVKGCNTSGTIVEVKADPEEEPTP---SNNTVAG-------EALLMNNGSRDTSHSD 340

Query: 231 IQKLQQQLQDIKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAVEKRILLY 290
           IQKLQQQLQDIKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRK+V+KRILLY
Sbjct: 341 IQKLQQQLQDIKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKSVDKRILLY 400

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328780820|ref|XP_623230.3| PREDICTED: e3 ubiquitin-protein ligase MIB1-like isoform 6 [Apis mellifera]

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/293 (67%), Positives = 227/293 (77%), Gaps = 11/293 (3%)

Query: 1   MGLGSQAADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVD 60
           MGLG+Q  DKKSS+ IACFLA +GADL +KNKKGQTPLDLCPDPNLCK LT C+KDKE  
Sbjct: 118 MGLGAQGQDKKSSSFIACFLAAHGADLKLKNKKGQTPLDLCPDPNLCKTLTTCHKDKESF 177

Query: 61  QIEPRVGEGDGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVE 120
           + +        T     +DEC +CSD KR++LF PCGHV CC++CAPRVKKCLICRE V 
Sbjct: 178 RHDIETAAPSAT-----IDECLVCSDGKREMLFSPCGHVTCCNICAPRVKKCLICRENVL 232

Query: 121 KRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGGPG 180
            R KIEEC+VCS +KAS+LF+PC HM ACESCA+LMKKCVQCRTQI HM P+ +CCGG G
Sbjct: 233 SRTKIEECVVCSDRKASMLFRPCGHMCACESCATLMKKCVQCRTQIQHMVPLSMCCGGGG 292

Query: 181 IISEVQHTTDPAEEENAVALSPNTSAATLVEASTSGA---LMNNGSRDTSTSDIQKLQQQ 237
            ++ V+++         V    N     L + +T G    LMNNGSRDTS +DIQKLQQQ
Sbjct: 293 DVTYVKNSNASGVTITEV---KNDQEEELPQQNTGGGETILMNNGSRDTSHNDIQKLQQQ 349

Query: 238 LQDIKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAVEKRILLY 290
           LQDIKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAV+KRILLY
Sbjct: 350 LQDIKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAVDKRILLY 402

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345480050|ref|XP_003424076.1| PREDICTED: E3 ubiquitin-protein ligase mib1-like [Nasonia vitripennis]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/335 (60%), Positives = 235/335 (70%), Gaps = 55/335 (16%)

Query: 1    MGLGSQAADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKE-- 58
            MGLG+Q  DKKSS+ IACFLA +GADL +KNKKGQTPLDLCPDPNLCK LT C+K+K+  
Sbjct: 734  MGLGAQGQDKKSSSFIACFLAAHGADLELKNKKGQTPLDLCPDPNLCKTLTTCHKNKDHN 793

Query: 59   VDQIEPRVGEGDGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREP 118
            ++   P  G          +DEC +CSD KR++LF PCGHV CC+ CAPRVKKCLICRE 
Sbjct: 794  IESSAPTTG----------IDECLVCSDAKREVLFGPCGHVTCCNACAPRVKKCLICRES 843

Query: 119  VEKRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGG 178
            V  R KIEEC+VCS +KASVLF+PC HM AC+SCASLMKKCVQCR QI HM P+ +CCGG
Sbjct: 844  VVNRTKIEECVVCSDRKASVLFRPCGHMCACDSCASLMKKCVQCRAQILHMLPLTMCCGG 903

Query: 179  PG-------------IISEVQHTTDPAEEE-------NAVALSPNTSAATLVEASTS--- 215
             G              ++E++ + DP +E+        A  LSP    +   +AS++   
Sbjct: 904  AGDVTYVKGCNATAAALAELKGSQDPEDEKLTANNTTPAQLLSPREVQSNQQQASSTSAT 963

Query: 216  --------------------GALMNNGSRDTSTSDIQKLQQQLQDIKEQTMCPVCLDRLK 255
                                G LMNNGSRDTS SDIQKLQQQLQDIKEQTMCPVCLDRLK
Sbjct: 964  SNNPSQQPQPQQQPAQQQPEGTLMNNGSRDTSHSDIQKLQQQLQDIKEQTMCPVCLDRLK 1023

Query: 256  NMIFLCGHGTCQMCGDRMSECPICRKAVEKRILLY 290
            NMIFLCGHGTCQMCGDRMSECPICRKAV+KRILLY
Sbjct: 1024 NMIFLCGHGTCQMCGDRMSECPICRKAVDKRILLY 1058

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
UNIPROTKB|E1C2G3	1006	MIB1 "Uncharacterized protein"	0.658	0.189	0.632	5.1e-92
UNIPROTKB|J9NX92	923	MIB1 "Uncharacterized protein"	0.610	0.191	0.668	5.5e-92
ZFIN|ZDB-GENE-030404-2	1041	mib "mind bomb" [Danio rerio (	0.986	0.274	0.581	8.1e-92
UNIPROTKB|Q86YT6	1006	MIB1 "E3 ubiquitin-protein lig	0.610	0.175	0.668	2.6e-91
MGI|MGI:2443157	1006	Mib1 "mindbomb homolog 1 (Dros	0.641	0.184	0.639	4.5e-91
UNIPROTKB|I3LLV6	1006	MIB1 "Uncharacterized protein"	0.610	0.175	0.668	4.5e-91
UNIPROTKB|E2RJP5	1008	MIB1 "Uncharacterized protein"	0.610	0.175	0.668	4.7e-91
RGD|1307195	1006	Mib1 "mindbomb E3 ubiquitin pr	0.610	0.175	0.668	5.9e-91
UNIPROTKB|E1BJ09	1006	MIB1 "Uncharacterized protein"	0.610	0.175	0.662	7.8e-91
FB|FBgn0263601	1226	mib1 "mind bomb 1" [Drosophila	0.382	0.090	0.630	2.5e-63

UNIPROTKB|E1C2G3 MIB1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 679 (244.1 bits), Expect = 5.1e-92, Sum P(2) = 5.1e-92
 Identities = 124/196 (63%), Positives = 150/196 (76%)

Query:     1 MGLGSQAADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVD 60
             MGLG+Q A+KKS+ASIACFLA NGADLSI+NKKGQ+PLDLCPDP+LCKAL KC+K+K   
Sbjct:   740 MGLGTQGAEKKSAASIACFLAANGADLSIRNKKGQSPLDLCPDPSLCKALAKCHKEKVSG 799

Query:    61 QIEPRVGEGDGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVE 120
             Q+  R        D  TL+EC +CSD+KRD LF PCGH+A CS+C+PRVKKCLIC+E V+
Sbjct:   800 QVGSR-SPSMINNDSETLEECMVCSDMKRDTLFGPCGHIATCSLCSPRVKKCLICKEQVQ 858

Query:   121 KRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGGPG 180
              R KIEEC+VCS KKA+VLF+PC HM ACE+CASLMKKCVQCR  ++   P ++CCGG G
Sbjct:   859 SRTKIEECVVCSDKKAAVLFQPCGHMCACENCASLMKKCVQCRAVVERRVPFIMCCGGKG 918

Query:   181 IISEVQHTTDPAEEEN 196
                  + TTD     N
Sbjct:   919 ----TEDTTDDISSGN 930

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001568 "blood vessel development" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001756 "somitogenesis" evidence=IEA

GO:0001841 "neural tube formation" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0045665 "negative regulation of neuron differentiation" evidence=IEA

GO:0045807 "positive regulation of endocytosis" evidence=IEA

UNIPROTKB|J9NX92 MIB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 671 (241.3 bits), Expect = 5.5e-92, Sum P(2) = 5.5e-92
 Identities = 119/178 (66%), Positives = 145/178 (81%)

Query:     1 MGLGSQAADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVD 60
             MGLG+Q A+KKS+ASIACFLA NGADLSI+NKKGQ+PLDLCPDP+LCKAL KC+K+K   
Sbjct:   657 MGLGTQGAEKKSAASIACFLAANGADLSIRNKKGQSPLDLCPDPSLCKALAKCHKEKVSG 716

Query:    61 QIEPRVGEGDGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVE 120
             Q+  R      + D  TL+EC +CSD+KRD LF PCGH+A CS+C+PRVKKCLIC+E V+
Sbjct:   717 QVGSR-SPSMISNDSETLEECMVCSDMKRDTLFGPCGHIATCSLCSPRVKKCLICKEQVQ 775

Query:   121 KRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGG 178
              R KIEEC+VCS KKA+VLF+PC HM ACE+CASLMKKCVQCR  ++   P ++CCGG
Sbjct:   776 SRTKIEECVVCSDKKAAVLFQPCGHMCACENCASLMKKCVQCRAVVERRVPFIMCCGG 833

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

ZFIN|ZDB-GENE-030404-2 mib "mind bomb" [Danio rerio (taxid:7955)]

 Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
 Identities = 172/296 (58%), Positives = 211/296 (71%)

Query:     1 MGLGSQAADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVD 60
             MGLG+Q A+KKS+ASIACFLA NGADL+I+NKKGQ+PLDLCPDP+LCKAL KC+K+K   
Sbjct:   750 MGLGTQGAEKKSAASIACFLAANGADLTIRNKKGQSPLDLCPDPSLCKALAKCHKEKTSG 809

Query:    61 QIEPRVGEGDGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVE 120
             Q+  R    +   +  TL+EC +CSD+KRD LF PCGH+A CS+C+PRVKKCLIC+E V+
Sbjct:   810 QVGSRSPSLNSNNE--TLEECMVCSDMKRDTLFGPCGHIATCSLCSPRVKKCLICKEQVQ 867

Query:   121 KRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGGPG 180
              R KIEEC+VCS KKA+VLF+PC HM ACE+CASLMKKCVQCR  ++   P V+CCGG G
Sbjct:   868 SRTKIEECVVCSDKKAAVLFQPCGHMCACENCASLMKKCVQCRAVVERRTPFVLCCGGKG 927

Query:   181 IISEVQHTTDPAEEENAVA------LSPNTSAATLVEASTSGALMNNGSRDTSTSXXXXX 234
             +  +     D     N++A      L PN  A +    +   AL  +       +     
Sbjct:   928 M-EDATDDEDLTGGSNSMAGGSQDLLQPNNLALSWSSGNIP-ALQRDKDNTNVNADVQKL 985

Query:   235 XXXXXXXXEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMSECPICRKAVEKRILLY 290
                     EQTMCPVCLDRLKNMIF+CGHGTCQ+CGDRMSECPICRKA+E+RILLY
Sbjct:   986 QQQLQDIKEQTMCPVCLDRLKNMIFMCGHGTCQLCGDRMSECPICRKAIERRILLY 1041

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IGI;IDA

GO:0001756 "somitogenesis" evidence=IMP

GO:0021986 "habenula development" evidence=IMP

GO:0007368 "determination of left/right symmetry" evidence=IMP

GO:0048699 "generation of neurons" evidence=IMP

GO:0001568 "blood vessel development" evidence=IMP

GO:0001885 "endothelial cell development" evidence=IMP

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IMP

GO:0060113 "inner ear receptor cell differentiation" evidence=IMP

GO:0007219 "Notch signaling pathway" evidence=IEA;IMP

GO:0031076 "embryonic camera-type eye development" evidence=IMP

GO:0045685 "regulation of glial cell differentiation" evidence=IMP

GO:0048259 "regulation of receptor-mediated endocytosis" evidence=IMP

GO:0071599 "otic vesicle development" evidence=IMP

GO:0030097 "hemopoiesis" evidence=IMP

GO:0048793 "pronephros development" evidence=IMP

GO:0060218 "hematopoietic stem cell differentiation" evidence=IMP

GO:0008593 "regulation of Notch signaling pathway" evidence=IMP

GO:0007420 "brain development" evidence=IMP

GO:0061195 "taste bud formation" evidence=IMP

GO:0021508 "floor plate formation" evidence=IMP

GO:0021521 "ventral spinal cord interneuron specification" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0051865 "protein autoubiquitination" evidence=IMP;IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0000151 "ubiquitin ligase complex" evidence=IC

GO:0048471 "perinuclear region of cytoplasm" evidence=IGI

GO:0002090 "regulation of receptor internalization" evidence=IDA

GO:0021536 "diencephalon development" evidence=IMP

GO:0009880 "embryonic pattern specification" evidence=IMP

GO:0008284 "positive regulation of cell proliferation" evidence=IGI

GO:0021520 "spinal cord motor neuron cell fate specification" evidence=IMP

GO:0021519 "spinal cord association neuron specification" evidence=IMP

GO:0021514 "ventral spinal cord interneuron differentiation" evidence=IMP

GO:0045664 "regulation of neuron differentiation" evidence=IMP

GO:0030318 "melanocyte differentiation" evidence=IMP

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0048514 "blood vessel morphogenesis" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030182 "neuron differentiation" evidence=IMP

GO:0030139 "endocytic vesicle" evidence=IDA

GO:0010001 "glial cell differentiation" evidence=IMP

GO:0048546 "digestive tract morphogenesis" evidence=IMP

GO:0001570 "vasculogenesis" evidence=IMP

GO:0021654 "rhombomere boundary formation" evidence=IMP

GO:0002064 "epithelial cell development" evidence=IMP

GO:0030902 "hindbrain development" evidence=IMP

GO:0043234 "protein complex" evidence=IPI

UNIPROTKB|Q86YT6 MIB1 "E3 ubiquitin-protein ligase MIB1" [Homo sapiens (taxid:9606)]

 Score = 673 (242.0 bits), Expect = 2.6e-91, Sum P(2) = 2.6e-91
 Identities = 119/178 (66%), Positives = 145/178 (81%)

Query:     1 MGLGSQAADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVD 60
             MGLG+Q A+KKS+ASIACFLA NGADLSI+NKKGQ+PLDLCPDPNLCKAL KC+K+K   
Sbjct:   740 MGLGTQGAEKKSAASIACFLAANGADLSIRNKKGQSPLDLCPDPNLCKALAKCHKEKVSG 799

Query:    61 QIEPRVGEGDGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVE 120
             Q+  R      + D  TL+EC +CSD+KRD LF PCGH+A CS+C+PRVKKCLIC+E V+
Sbjct:   800 QVGSR-SPSMISNDSETLEECMVCSDMKRDTLFGPCGHIATCSLCSPRVKKCLICKEQVQ 858

Query:   121 KRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGG 178
              R KIEEC+VCS KKA+VLF+PC HM ACE+CA+LMKKCVQCR  ++   P ++CCGG
Sbjct:   859 SRTKIEECVVCSDKKAAVLFQPCGHMCACENCANLMKKCVQCRAVVERRVPFIMCCGG 916

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001568 "blood vessel development" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001756 "somitogenesis" evidence=IEA

GO:0001841 "neural tube formation" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0045665 "negative regulation of neuron differentiation" evidence=IEA

GO:0045807 "positive regulation of endocytosis" evidence=IEA

GO:0005813 "centrosome" evidence=IDA

GO:0007219 "Notch signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0031965 "nuclear membrane" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

MGI|MGI:2443157 Mib1 "mindbomb homolog 1 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 671 (241.3 bits), Expect = 4.5e-91, Sum P(2) = 4.5e-91
 Identities = 124/194 (63%), Positives = 151/194 (77%)

Query:     1 MGLGSQAADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVD 60
             MGLG+Q A+KKS+ASIACFLA NGADLSI+NKKGQ+PLDLCPDP+LCKAL KC+K+K   
Sbjct:   740 MGLGTQGAEKKSAASIACFLAANGADLSIRNKKGQSPLDLCPDPSLCKALAKCHKEKVSG 799

Query:    61 QIEPRVGEGDGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVE 120
             Q+  R      + D  TL+EC +CSD+KRD LF PCGH+A CS+C+PRVKKCLIC+E V+
Sbjct:   800 QVGSR-SPSMISNDSETLEECMVCSDMKRDTLFGPCGHIATCSLCSPRVKKCLICKEQVQ 858

Query:   121 KRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGGPG 180
              R KIEEC+VCS KKA+VLF+PC HM ACE+CASLMKKCVQCR  ++   P + CCGG  
Sbjct:   859 SRTKIEECVVCSDKKAAVLFQPCGHMCACENCASLMKKCVQCRAVVERRVPFITCCGGKS 918

Query:   181 IISEVQHTTDPAEE 194
               SE     DP++E
Sbjct:   919 --SE-----DPSDE 925

GO:0001568 "blood vessel development" evidence=IMP

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0001756 "somitogenesis" evidence=IMP

GO:0001841 "neural tube formation" evidence=IMP

GO:0001947 "heart looping" evidence=IMP

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IMP

GO:0007507 "heart development" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0014069 "postsynaptic density" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0045665 "negative regulation of neuron differentiation" evidence=IMP

GO:0045807 "positive regulation of endocytosis" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|I3LLV6 MIB1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 671 (241.3 bits), Expect = 4.5e-91, Sum P(2) = 4.5e-91
 Identities = 119/178 (66%), Positives = 145/178 (81%)

Query:     1 MGLGSQAADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVD 60
             MGLG+Q A+KKS+ASIACFLA NGADLSI+NKKGQ+PLDLCPDP+LCKAL KC+K+K   
Sbjct:   740 MGLGTQGAEKKSAASIACFLAANGADLSIRNKKGQSPLDLCPDPSLCKALAKCHKEKVSG 799

Query:    61 QIEPRVGEGDGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVE 120
             Q+  R      + D  TL+EC +CSD+KRD LF PCGH+A CS+C+PRVKKCLIC+E V+
Sbjct:   800 QVGSR-SPSMISNDSETLEECMVCSDMKRDTLFGPCGHIATCSLCSPRVKKCLICKEQVQ 858

Query:   121 KRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGG 178
              R KIEEC+VCS KKA+VLF+PC HM ACE+CASLMKKCVQCR  ++   P ++CCGG
Sbjct:   859 SRTKIEECVVCSDKKAAVLFQPCGHMCACENCASLMKKCVQCRAVVERRVPFIMCCGG 916

GO:0045807 "positive regulation of endocytosis" evidence=IEA

GO:0045665 "negative regulation of neuron differentiation" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0001841 "neural tube formation" evidence=IEA

GO:0001756 "somitogenesis" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001568 "blood vessel development" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|E2RJP5 MIB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 671 (241.3 bits), Expect = 4.7e-91, Sum P(2) = 4.7e-91
 Identities = 119/178 (66%), Positives = 145/178 (81%)

Query:     1 MGLGSQAADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVD 60
             MGLG+Q A+KKS+ASIACFLA NGADLSI+NKKGQ+PLDLCPDP+LCKAL KC+K+K   
Sbjct:   742 MGLGTQGAEKKSAASIACFLAANGADLSIRNKKGQSPLDLCPDPSLCKALAKCHKEKVSG 801

Query:    61 QIEPRVGEGDGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVE 120
             Q+  R      + D  TL+EC +CSD+KRD LF PCGH+A CS+C+PRVKKCLIC+E V+
Sbjct:   802 QVGSR-SPSMISNDSETLEECMVCSDMKRDTLFGPCGHIATCSLCSPRVKKCLICKEQVQ 860

Query:   121 KRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGG 178
              R KIEEC+VCS KKA+VLF+PC HM ACE+CASLMKKCVQCR  ++   P ++CCGG
Sbjct:   861 SRTKIEECVVCSDKKAAVLFQPCGHMCACENCASLMKKCVQCRAVVERRVPFIMCCGG 918

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

RGD|1307195 Mib1 "mindbomb E3 ubiquitin protein ligase 1" [Rattus norvegicus (taxid:10116)]

 Score = 670 (240.9 bits), Expect = 5.9e-91, Sum P(2) = 5.9e-91
 Identities = 119/178 (66%), Positives = 144/178 (80%)

Query:     1 MGLGSQAADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVD 60
             MGLG+Q A+KKS+ASIACFLA NGADLSI+NKKGQ+PLDLCPDP+LCKAL KC+K+K   
Sbjct:   740 MGLGTQGAEKKSAASIACFLAANGADLSIRNKKGQSPLDLCPDPSLCKALAKCHKEKVSG 799

Query:    61 QIEPRVGEGDGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVE 120
             Q+  R      + D  TL+EC +CSD+KRD LF PCGH+A CS+C+PRVKKCLIC+E V+
Sbjct:   800 QVGSR-SPSMISNDSETLEECMVCSDMKRDTLFGPCGHIATCSLCSPRVKKCLICKEQVQ 858

Query:   121 KRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGG 178
              R KIEEC+VCS KKA+VLF+PC HM ACE+CASLMKKCVQCR  ++   P + CCGG
Sbjct:   859 SRTKIEECVVCSDKKAAVLFQPCGHMCACENCASLMKKCVQCRAVVERRVPFITCCGG 916

GO:0001568 "blood vessel development" evidence=ISO

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0001756 "somitogenesis" evidence=ISO

GO:0001841 "neural tube formation" evidence=ISO

GO:0001947 "heart looping" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005813 "centrosome" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0007219 "Notch signaling pathway" evidence=ISO

GO:0007507 "heart development" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IDA

GO:0031410 "cytoplasmic vesicle" evidence=ISO

GO:0031965 "nuclear membrane" evidence=ISO

GO:0043231 "intracellular membrane-bounded organelle" evidence=ISO

GO:0045665 "negative regulation of neuron differentiation" evidence=ISO

GO:0045807 "positive regulation of endocytosis" evidence=ISO

UNIPROTKB|E1BJ09 MIB1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 669 (240.6 bits), Expect = 7.8e-91, Sum P(2) = 7.8e-91
 Identities = 118/178 (66%), Positives = 145/178 (81%)

Query:     1 MGLGSQAADKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKEVD 60
             MGLG+Q A+KKS+ASIACFLA NGADLSI+NKKGQ+PLDLCPDP+LCKAL KC+K+K   
Sbjct:   740 MGLGTQGAEKKSAASIACFLAANGADLSIRNKKGQSPLDLCPDPSLCKALAKCHKEKVSG 799

Query:    61 QIEPRVGEGDGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVE 120
             Q+  R      + D  TL+EC +CSD+KRD LF PCGH+A CS+C+PRVKKCL+C+E V+
Sbjct:   800 QVGSR-SPSMISNDSETLEECMVCSDMKRDTLFGPCGHIATCSLCSPRVKKCLLCKEQVQ 858

Query:   121 KRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGG 178
              R KIEEC+VCS KKA+VLF+PC HM ACE+CASLMKKCVQCR  ++   P ++CCGG
Sbjct:   859 SRTKIEECVVCSDKKAAVLFQPCGHMCACENCASLMKKCVQCRAVVERRVPFIMCCGG 916

GO:0045807 "positive regulation of endocytosis" evidence=IEA

GO:0045665 "negative regulation of neuron differentiation" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0007219 "Notch signaling pathway" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0001841 "neural tube formation" evidence=IEA

GO:0001756 "somitogenesis" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001568 "blood vessel development" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

FB|FBgn0263601 mib1 "mind bomb 1" [Drosophila melanogaster (taxid:7227)]

 Score = 417 (151.9 bits), Expect = 2.5e-63, Sum P(3) = 2.5e-63
 Identities = 70/111 (63%), Positives = 86/111 (77%)

Query:    70 DGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKIEECM 129
             D  +   +LDEC +CSD KRD +F+PCGHV+CC  CAPRVKKCLICRE V  R KI+EC+
Sbjct:   959 DPPKSSASLDECLVCSDAKRDTVFKPCGHVSCCETCAPRVKKCLICRETVSSREKIDECL 1018

Query:   130 VCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGGPG 180
             VCS ++A+V F+PC HMVACE C++LMKKCV CRTQID +    +CCGG G
Sbjct:  1019 VCSDRRAAVFFRPCGHMVACEHCSALMKKCVLCRTQIDEILSFSLCCGGSG 1069

GO:0016567 "protein ubiquitination" evidence=IEA;NAS

GO:0046872 "metal ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;NAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0048749 "compound eye development" evidence=NAS

GO:0045807 "positive regulation of endocytosis" evidence=NAS

GO:0008587 "imaginal disc-derived wing margin morphogenesis" evidence=NAS

GO:0008593 "regulation of Notch signaling pathway" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0045179 "apical cortex" evidence=IDA

GO:0006897 "endocytosis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0001745 "compound eye morphogenesis" evidence=IMP

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IMP

GO:0008104 "protein localization" evidence=IMP

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0007423 "sensory organ development" evidence=IMP

GO:0007219 "Notch signaling pathway" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q80SY4	MIB1_MOUSE	6, ., 3, ., 2, ., -	0.6206	0.9206	0.2654	yes	N/A
Q804S5	MIB1_DANRE	6, ., 3, ., 2, ., -	0.6216	0.9862	0.2776	yes	N/A
Q86YT6	MIB1_HUMAN	6, ., 3, ., 2, ., -	0.6206	0.9206	0.2654	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	290
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	7e-08
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	5e-05
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	6e-05
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	0.004

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 47.8 bits (114), Expect = 7e-08
 Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 3/47 (6%)

Query: 79  DECRICSDLKRDILFQPCGHVACCSVCAPRV---KKCLICREPVEKR 122
           D C IC +  R+++F PCGH+  C  CA R+   KKC ICR+P+E  
Sbjct: 3   DLCVICLERPRNVVFLPCGHLCLCEECAKRLRSKKKCPICRQPIESV 49

Length = 49

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 39.7 bits (93), Expect = 5e-05
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 126 EECMVCSLKKASVLFKPCYHMVACESCASLM---KKCVQCRTQIDHM 169
           + C++C  +  +V+F PC H+  CE CA  +   KKC  CR  I+ +
Sbjct: 3   DLCVICLERPRNVVFLPCGHLCLCEECAKRLRSKKKCPICRQPIESV 49

Length = 49

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 39.7 bits (93), Expect = 6e-05
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 5/49 (10%)

Query: 243 EQTMCPVCLDRLKNMIFL-CGH-GTCQMCGDRM---SECPICRKAVEKR 286
           E  +C +CL+R +N++FL CGH   C+ C  R+    +CPICR+ +E  
Sbjct: 1   EDDLCVICLERPRNVVFLPCGHLCLCEECAKRLRSKKKCPICRQPIESV 49

Length = 49

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 34.4 bits (79), Expect = 0.004
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 6/45 (13%)

Query: 243 EQTMCPVCLDRLKNMIFL--CGHGTCQMCGDRM----SECPICRK 281
           E+  CP+CLD L++ + L  CGH  C+ C  R     S+CPICR 
Sbjct: 1   EELECPICLDLLRDPVVLTPCGHVFCRECILRYLKKKSKCPICRT 45

Length = 45

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	290
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	99.07
KOG4265|consensus	349		99.04
KOG4172|consensus	62		98.99
KOG4275|consensus	350		98.89
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.88
KOG4275|consensus	350		98.77
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.75
KOG1571|consensus	355		98.73
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.57
KOG4172|consensus	62		98.49
KOG0823|consensus	230		98.39
KOG4265|consensus	349		98.35
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.32
KOG0317|consensus	293		98.24
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.23
KOG0320|consensus	187		98.23
PHA02929	238	N1R/p28-like protein; Provisional	98.19
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.18
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.17
KOG0978|consensus	698		98.14
KOG1571|consensus	355		98.12
PHA02926	242	zinc finger-like protein; Provisional	98.08
PF14634	44	zf-RING_5: zinc-RING finger domain	98.05
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.05
KOG1100|consensus	207		98.04
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	97.98
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	97.88
KOG0287|consensus	442		97.85
KOG2164|consensus	513		97.84
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.74
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	97.7
KOG1100|consensus	207		97.69
KOG0311|consensus	381		97.66
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	97.65
KOG0824|consensus	324		97.61
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.44
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	97.44
PF14634	44	zf-RING_5: zinc-RING finger domain	97.43
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	97.42
KOG0823|consensus	230		97.09
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	96.98
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	96.84
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	96.84
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	96.82
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	96.77
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	96.71
KOG0320|consensus	187		96.67
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	96.63
KOG0317|consensus	293		96.56
PHA02929	238	N1R/p28-like protein; Provisional	96.53
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	96.3
KOG2660|consensus	331		96.28
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	96.24
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	96.2
PHA02926	242	zinc finger-like protein; Provisional	95.99
KOG1785|consensus	563		95.88
KOG2879|consensus	298		95.87
KOG0297|consensus	391		95.84
KOG0978|consensus	698		95.8
COG5236	493	Uncharacterized conserved protein, contains RING Z	95.75
KOG4159|consensus	398		95.73
KOG3002|consensus	299		95.72
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	95.67
KOG2164|consensus	513		95.54
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	95.51
KOG4692|consensus	489		95.48
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	95.36
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	95.3
KOG1039|consensus	344		95.22
KOG0802|consensus	543		95.17
KOG0824|consensus	324		94.92
KOG4692|consensus	489		94.75
KOG1785|consensus	563		94.69
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	94.53
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	94.47
COG5236	493	Uncharacterized conserved protein, contains RING Z	94.44
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	94.44
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	94.23
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	94.21
COG5152	259	Uncharacterized conserved protein, contains RING a	94.14
KOG0804|consensus	493		93.81
KOG1814|consensus	445		93.78
KOG1813|consensus	313		93.76
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	93.72
COG5222	427	Uncharacterized conserved protein, contains RING Z	93.7
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	93.68
KOG4628|consensus	348		93.61
KOG2177|consensus	386		93.41
KOG0287|consensus	442		93.17
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	93.14
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	93.03
KOG2177|consensus	386		92.46
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	92.13
KOG0804|consensus	493		92.08
COG5175	480	MOT2 Transcriptional repressor [Transcription]	92.05
KOG0515|consensus	752		91.94
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	91.75
KOG0825|consensus	1134		91.55
KOG0509|consensus	600		91.27
KOG2113|consensus	394		91.25
KOG3039|consensus	303		90.86
KOG1814|consensus	445		90.86
PHA02741	169	hypothetical protein; Provisional	90.58
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	89.94
PF04641	260	Rtf2: Rtf2 RING-finger	89.73
KOG2879|consensus	298		89.68
KOG3002|consensus	299		89.54
KOG4412|consensus	226		89.04
KOG4159|consensus	398		88.86
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	88.63
KOG0508|consensus	615		88.48
KOG2231|consensus	669		88.41
KOG1002|consensus	791		88.23
PHA02798	489	ankyrin-like protein; Provisional	87.59
KOG4628|consensus	348		86.87
PHA02736	154	Viral ankyrin protein; Provisional	86.25
PHA02743	166	Viral ankyrin protein; Provisional	86.19
PHA02795	437	ankyrin-like protein; Provisional	86.09
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	85.85
KOG0505|consensus	527		85.73
KOG1813|consensus	313		85.66
PHA02736	154	Viral ankyrin protein; Provisional	85.56
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	85.55
PHA03095	471	ankyrin-like protein; Provisional	85.36
PHA02791	284	ankyrin-like protein; Provisional	84.93
KOG1039|consensus	344		84.81
KOG2932|consensus	389		84.65
PHA02730	672	ankyrin-like protein; Provisional	84.48
KOG1001|consensus	674		84.38
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	84.23
PHA02730	672	ankyrin-like protein; Provisional	83.83
KOG0802|consensus	543		83.37
PHA02743	166	Viral ankyrin protein; Provisional	83.0
PHA02989	494	ankyrin repeat protein; Provisional	82.88
PF04710	416	Pellino: Pellino; InterPro: IPR006800 Pellino is i	82.58
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	82.29
PHA03100	480	ankyrin repeat protein; Provisional	82.16
KOG0195|consensus	448		81.8
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	81.79
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	81.77
PHA02741	169	hypothetical protein; Provisional	81.23
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	81.2
PHA02859	209	ankyrin repeat protein; Provisional	80.84
PHA02946	446	ankyin-like protein; Provisional	80.5
PF04641	260	Rtf2: Rtf2 RING-finger	80.37

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=99.07  E-value=4.3e-11  Score=82.18  Aligned_cols=44  Identities=50%  Similarity=1.167  Sum_probs=39.4

Q ss_pred             CCccccccccCcceEeecCCCcccccchhhhh----ccCCCCCCcchh
Q psy7970          78 LDECRICSDLKRDILFQPCGHVACCSVCAPRV----KKCLICREPVEK  121 (290)
Q Consensus        78 ~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~----~~Cp~Cr~~i~~  121 (290)
                      +.+|.||+++.++++++||||..+|..|+.++    .+||+||++|.+
T Consensus         2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~   49 (50)
T PF13920_consen    2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES   49 (50)
T ss_dssp             HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred             cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence            46899999999999999999999999999988    899999999875

...

>KOG4265|consensus

Probab=99.04  E-value=6.8e-11  Score=110.14  Aligned_cols=53  Identities=38%  Similarity=0.829  Sum_probs=47.3

Q ss_pred             CCCCCCccccccccCcceEeecCCCcccccchhhhh----ccCCCCCCcchhhcccc
Q psy7970          74 DMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRV----KKCLICREPVEKRIKIE  126 (290)
Q Consensus        74 ~~~~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~----~~Cp~Cr~~i~~~~~i~  126 (290)
                      ++++..+|+||++..+|++++||+|.|+|..||..+    .+||+||++|...+.++
T Consensus       286 ~~~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~  342 (349)
T KOG4265|consen  286 ESESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIY  342 (349)
T ss_pred             cccCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheec
Confidence            446678999999999999999999999999999987    36999999999887754

>KOG4172|consensus

Probab=98.99  E-value=3.2e-11  Score=82.86  Aligned_cols=49  Identities=41%  Similarity=0.882  Sum_probs=45.1

Q ss_pred             CCccccccccCcceEeecCCCcccccchhhhhc-----cCCCCCCcchhhcccc
Q psy7970          78 LDECRICSDLKRDILFQPCGHVACCSVCAPRVK-----KCLICREPVEKRIKIE  126 (290)
Q Consensus        78 ~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~~-----~Cp~Cr~~i~~~~~i~  126 (290)
                      ..||.||++++.|.++.-|||++.|.+|+.+++     .||+||.+|...++.|
T Consensus         7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY   60 (62)
T KOG4172|consen    7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTY   60 (62)
T ss_pred             ccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhh
Confidence            379999999999999999999999999999984     6999999999888754

>KOG4275|consensus

Probab=98.89  E-value=3.6e-10  Score=102.46  Aligned_cols=51  Identities=37%  Similarity=0.864  Sum_probs=47.6

Q ss_pred             CCCCccccccccCcceEeecCCCcccccchhhhhccCCCCCCcchhhcccc
Q psy7970          76 VTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKIE  126 (290)
Q Consensus        76 ~~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~~~Cp~Cr~~i~~~~~i~  126 (290)
                      .....|.||+|.++|.+|+||||++.|..|..+|..|||||+.|....+|+
T Consensus       298 ~~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif  348 (350)
T KOG4275|consen  298 ATRRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIF  348 (350)
T ss_pred             hHHHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhh
Confidence            337789999999999999999999999999999999999999999888775

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.88  E-value=1.1e-09  Score=75.06  Aligned_cols=44  Identities=41%  Similarity=0.911  Sum_probs=38.6

Q ss_pred             cccccccccCCceEEeCCCCeecchhhHhcC----CCCCCCCcccccc
Q psy7970         126 EECMVCSLKKASVLFKPCYHMVACESCASLM----KKCVQCRTQIDHM  169 (290)
Q Consensus       126 ~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~~----~~Cp~Cr~~i~~~  169 (290)
                      ..|.+|++...+++++||||.++|..|+.++    ++||+||++|+++
T Consensus         3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V   50 (50)
T PF13920_consen    3 EECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV   50 (50)
T ss_dssp             SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred             CCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence            4799999999999999999999999999876    8999999998763

...

>KOG4275|consensus

Probab=98.77  E-value=9.6e-10  Score=99.72  Aligned_cols=49  Identities=29%  Similarity=0.647  Sum_probs=46.7

Q ss_pred             ccccccccccCCceEEeCCCCeecchhhHhcCCCCCCCCccccccccee
Q psy7970         125 IEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMV  173 (290)
Q Consensus       125 i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~~~~Cp~Cr~~i~~~~~~~  173 (290)
                      -++|.||+|.+.+.+|++|||+++|..|+.+|..||+||+.|.++++||
T Consensus       300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif  348 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIF  348 (350)
T ss_pred             HHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhh
Confidence            3699999999999999999999999999999999999999999998876

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.75  E-value=1.8e-09  Score=71.52  Aligned_cols=33  Identities=48%  Similarity=1.266  Sum_probs=26.3

Q ss_pred             cccccccccccccc-cCCccchHHHhcCC--------CCCCC
Q psy7970         247 CPVCLDRLKNMIFL-CGHGTCQMCGDRMS--------ECPIC  279 (290)
Q Consensus       247 C~IC~~~~~~~v~~-CGH~fC~~C~~~~~--------~CP~C  279 (290)
                      ||||++++++||.+ |||+||..|+.++|        .||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            89999999999886 99999999999763        47776

>KOG1571|consensus

Probab=98.73  E-value=4.1e-09  Score=98.44  Aligned_cols=59  Identities=31%  Similarity=0.786  Sum_probs=53.2

Q ss_pred             CCCCCCCCCCCCccccccccCcceEeecCCCcccccchhhhhccCCCCCCcchhhcccc
Q psy7970          68 EGDGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKIE  126 (290)
Q Consensus        68 ~~~~~~~~~~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~~~Cp~Cr~~i~~~~~i~  126 (290)
                      +++...+.+....|+||++++.+++|+||||+++|..|+..+.+||+||+.|....+.|
T Consensus       295 ~~~~~~~~~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y  353 (355)
T KOG1571|consen  295 ENGTFRELPQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRY  353 (355)
T ss_pred             ccCcccccCCCCceEEecCCccceeeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHh
Confidence            34556677888899999999999999999999999999999999999999999888765

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.57  E-value=1.2e-08  Score=88.63  Aligned_cols=48  Identities=29%  Similarity=0.782  Sum_probs=40.6

Q ss_pred             hccCCCccccccccccccccc-cCCccchHHHhcC--------------------CCCCCCcccccccc
Q psy7970         240 DIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRM--------------------SECPICRKAVEKRI  287 (290)
Q Consensus       240 ~l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~--------------------~~CP~CR~~i~~~~  287 (290)
                      +..++..|+||++.+++|+++ |||.||+.|+..|                    ..||.||..+....
T Consensus        14 ~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~   82 (193)
T PLN03208         14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEAT   82 (193)
T ss_pred             cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhc
Confidence            445679999999999999775 9999999999865                    26999999996643

>KOG4172|consensus

Probab=98.49  E-value=5.2e-09  Score=72.03  Aligned_cols=48  Identities=27%  Similarity=0.645  Sum_probs=43.3

Q ss_pred             cccccccccCCceEEeCCCCeecchhhHhcCC-----CCCCCCccccccccee
Q psy7970         126 EECMVCSLKKASVLFKPCYHMVACESCASLMK-----KCVQCRTQIDHMHPMV  173 (290)
Q Consensus       126 ~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~~~-----~Cp~Cr~~i~~~~~~~  173 (290)
                      .+|.+|++.+.+.++.-|||++.|.+|+.+++     .||+||.+|.++++.|
T Consensus         8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY   60 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTY   60 (62)
T ss_pred             cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhh
Confidence            58999999999999999999999999998764     6999999999887643

>KOG0823|consensus

Probab=98.39  E-value=8.9e-08  Score=84.73  Aligned_cols=48  Identities=35%  Similarity=0.730  Sum_probs=40.3

Q ss_pred             CCCccccccccccccccc-cCCccchHHHhcCC-------CCCCCcccccc--cccCC
Q psy7970         243 EQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRMS-------ECPICRKAVEK--RILLY  290 (290)
Q Consensus       243 e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~~-------~CP~CR~~i~~--~~~~y  290 (290)
                      ..+.|.||+|.-++||++ |||.||+.|+.+|.       .||+|+..++.  .+.||
T Consensus        46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY  103 (230)
T KOG0823|consen   46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY  103 (230)
T ss_pred             CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence            468999999999999775 99999999999983       69999998854  44444

>KOG4265|consensus

Probab=98.35  E-value=1.4e-07  Score=88.14  Aligned_cols=49  Identities=29%  Similarity=0.807  Sum_probs=44.0

Q ss_pred             cccccccccCCceEEeCCCCeecchhhHhcC----CCCCCCCcccccccceee
Q psy7970         126 EECMVCSLKKASVLFKPCYHMVACESCASLM----KKCVQCRTQIDHMHPMVV  174 (290)
Q Consensus       126 ~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~~----~~Cp~Cr~~i~~~~~~~~  174 (290)
                      .+|+||+...++++++||.|++.|.+||..+    .+||+||++|+..+.+.+
T Consensus       291 keCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~  343 (349)
T KOG4265|consen  291 KECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYV  343 (349)
T ss_pred             CeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecc
Confidence            4899999999999999999999999999755    479999999999887743

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.32  E-value=1.4e-07  Score=61.21  Aligned_cols=33  Identities=42%  Similarity=1.331  Sum_probs=26.6

Q ss_pred             ccccccccccc-ccc-cCCccchHHHhcC----CCCCCC
Q psy7970         247 CPVCLDRLKNM-IFL-CGHGTCQMCGDRM----SECPIC  279 (290)
Q Consensus       247 C~IC~~~~~~~-v~~-CGH~fC~~C~~~~----~~CP~C  279 (290)
                      |+||++.+.+| +++ |||.||..|+.++    ..||+|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            89999999999 444 9999999999976    468876

>KOG0317|consensus

Probab=98.24  E-value=3.6e-07  Score=83.23  Aligned_cols=47  Identities=30%  Similarity=0.683  Sum_probs=39.9

Q ss_pred             cCCCcccccccccccc-ccccCCccchHHHhcCC----CCCCCccccccccc
Q psy7970         242 KEQTMCPVCLDRLKNM-IFLCGHGTCQMCGDRMS----ECPICRKAVEKRIL  288 (290)
Q Consensus       242 ~e~~~C~IC~~~~~~~-v~~CGH~fC~~C~~~~~----~CP~CR~~i~~~~~  288 (290)
                      +....|.+|++...+| .++|||.||++|+..|-    .||.||..+.....
T Consensus       237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskv  288 (293)
T KOG0317|consen  237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKV  288 (293)
T ss_pred             CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcce
Confidence            4458999999999999 45699999999999983    79999999865443

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.23  E-value=4.1e-07  Score=65.08  Aligned_cols=45  Identities=36%  Similarity=0.841  Sum_probs=26.8

Q ss_pred             HhccCCCccccccccccccccc--cCCccchHHHhcC--CCCCCCcccc
Q psy7970         239 QDIKEQTMCPVCLDRLKNMIFL--CGHGTCQMCGDRM--SECPICRKAV  283 (290)
Q Consensus       239 ~~l~e~~~C~IC~~~~~~~v~~--CGH~fC~~C~~~~--~~CP~CR~~i  283 (290)
                      +.+++-+.|++|.+.++.||.+  |.|.||+.|+.+-  ..||.|+.|-
T Consensus         2 ~~le~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~~CPvC~~Pa   50 (65)
T PF14835_consen    2 ERLEELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGSECPVCHTPA   50 (65)
T ss_dssp             HHHHHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTTB-SSS--B-
T ss_pred             hHHHHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCCCCCCcCChH
Confidence            4567779999999999999753  9999999999976  4799999886

>KOG0320|consensus

Probab=98.23  E-value=3.4e-07  Score=78.02  Aligned_cols=45  Identities=33%  Similarity=0.897  Sum_probs=37.3

Q ss_pred             CCCccccccccccccc-c-c-cCCccchHHHhcC----CCCCCCcccccccc
Q psy7970         243 EQTMCPVCLDRLKNMI-F-L-CGHGTCQMCGDRM----SECPICRKAVEKRI  287 (290)
Q Consensus       243 e~~~C~IC~~~~~~~v-~-~-CGH~fC~~C~~~~----~~CP~CR~~i~~~~  287 (290)
                      .-..|||||+-+..-+ + . |||.||+.|+...    ..||+||+.|+.+.
T Consensus       130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~  181 (187)
T KOG0320|consen  130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQ  181 (187)
T ss_pred             cccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchhh
Confidence            4489999999887764 3 3 9999999999975    47999999987755

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.19  E-value=7.5e-07  Score=80.28  Aligned_cols=45  Identities=27%  Similarity=0.755  Sum_probs=36.8

Q ss_pred             cCCCcccccccccccc--------ccc-cCCccchHHHhcCC----CCCCCccccccc
Q psy7970         242 KEQTMCPVCLDRLKNM--------IFL-CGHGTCQMCGDRMS----ECPICRKAVEKR  286 (290)
Q Consensus       242 ~e~~~C~IC~~~~~~~--------v~~-CGH~fC~~C~~~~~----~CP~CR~~i~~~  286 (290)
                      ..+..|+||++.+.++        +++ |||.||..|+..|.    .||+||.++...
T Consensus       172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v  229 (238)
T PHA02929        172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISV  229 (238)
T ss_pred             CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEE
Confidence            4578999999987653        344 99999999999873    799999998654

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.18  E-value=5.3e-07  Score=86.76  Aligned_cols=49  Identities=27%  Similarity=0.712  Sum_probs=42.2

Q ss_pred             HHHhccCCCccccccccccccccc-cCCccchHHHhcCC----CCCCCcccccc
Q psy7970         237 QLQDIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRMS----ECPICRKAVEK  285 (290)
Q Consensus       237 ~~~~l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~~----~CP~CR~~i~~  285 (290)
                      .++.++..+.|+||++.+.+|+++ |||.||..|+..++    .||.||..+..
T Consensus        19 ~l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~   72 (397)
T TIGR00599        19 SLYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE   72 (397)
T ss_pred             cccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence            345678889999999999999775 99999999999753    69999998854

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00504 Ubox Modified RING finger domain

Probab=98.17  E-value=7.3e-07  Score=63.45  Aligned_cols=44  Identities=16%  Similarity=0.378  Sum_probs=38.1

Q ss_pred             CCccccccccccccccc-cCCccchHHHhcCC----CCCCCcccccccc
Q psy7970         244 QTMCPVCLDRLKNMIFL-CGHGTCQMCGDRMS----ECPICRKAVEKRI  287 (290)
Q Consensus       244 ~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~~----~CP~CR~~i~~~~  287 (290)
                      ++.||||.+.+.+|+.. |||+||+.|+..++    .||+|++++....
T Consensus         1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~   49 (63)
T smart00504        1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHED   49 (63)
T ss_pred             CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhh
Confidence            36899999999999775 99999999999773    7999999986544

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG0978|consensus

Probab=98.14  E-value=8.8e-07  Score=89.86  Aligned_cols=55  Identities=33%  Similarity=0.706  Sum_probs=48.6

Q ss_pred             HHHHHHHHHhccCCCccccccccccccccc-cCCccchHHHhcC-----CCCCCCcccccc
Q psy7970         231 IQKLQQQLQDIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRM-----SECPICRKAVEK  285 (290)
Q Consensus       231 ~~~l~~~~~~l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~-----~~CP~CR~~i~~  285 (290)
                      -..|.++++..++.+.||+|-+.+++.|++ |||.||..|+...     +.||.|..+|..
T Consensus       630 d~~L~EElk~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga  690 (698)
T KOG0978|consen  630 DEVLAEELKEYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGA  690 (698)
T ss_pred             cHHHHHHHHHHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence            345778888889999999999999999887 9999999999965     589999999954

>KOG1571|consensus

Probab=98.12  E-value=7.9e-07  Score=83.30  Aligned_cols=48  Identities=29%  Similarity=0.728  Sum_probs=45.1

Q ss_pred             cccccccccCCceEEeCCCCeecchhhHhcCCCCCCCCccccccccee
Q psy7970         126 EECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMV  173 (290)
Q Consensus       126 ~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~~~~Cp~Cr~~i~~~~~~~  173 (290)
                      ..|.||.+.+.+++|+||||++.|..|+..+.+||.||+.|....+.|
T Consensus       306 ~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y  353 (355)
T KOG1571|consen  306 DLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRY  353 (355)
T ss_pred             CceEEecCCccceeeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHh
Confidence            599999999999999999999999999999999999999999887764

>PHA02926 zinc finger-like protein; Provisional

Probab=98.08  E-value=1.4e-06  Score=76.96  Aligned_cols=46  Identities=24%  Similarity=0.680  Sum_probs=36.3

Q ss_pred             hccCCCccccccccccc---------cccc-cCCccchHHHhcCC----------CCCCCcccccc
Q psy7970         240 DIKEQTMCPVCLDRLKN---------MIFL-CGHGTCQMCGDRMS----------ECPICRKAVEK  285 (290)
Q Consensus       240 ~l~e~~~C~IC~~~~~~---------~v~~-CGH~fC~~C~~~~~----------~CP~CR~~i~~  285 (290)
                      +..++..|+||++...+         .+++ |+|.||..|+..|.          .||+||..+..
T Consensus       166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~  231 (242)
T PHA02926        166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN  231 (242)
T ss_pred             hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence            33567899999997533         2454 99999999999884          29999999865

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.05  E-value=2e-06  Score=57.39  Aligned_cols=36  Identities=36%  Similarity=1.044  Sum_probs=29.2

Q ss_pred             cccccccccc---cccc-ccCCccchHHHhcCC----CCCCCcc
Q psy7970         246 MCPVCLDRLK---NMIF-LCGHGTCQMCGDRMS----ECPICRK  281 (290)
Q Consensus       246 ~C~IC~~~~~---~~v~-~CGH~fC~~C~~~~~----~CP~CR~  281 (290)
                      .|+||++.+.   .+.+ .|||.||..|+..+.    .||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            4899999882   2333 499999999999876    8999985

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.05  E-value=1e-06  Score=58.64  Aligned_cols=35  Identities=34%  Similarity=1.023  Sum_probs=28.0

Q ss_pred             ccccccccccc--ccc--ccCCccchHHHhcC----CCCCCCc
Q psy7970         246 MCPVCLDRLKN--MIF--LCGHGTCQMCGDRM----SECPICR  280 (290)
Q Consensus       246 ~C~IC~~~~~~--~v~--~CGH~fC~~C~~~~----~~CP~CR  280 (290)
                      .|+||++.+.+  .++  .|||.|+..|+..|    ..||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence            69999999854  233  49999999999988    4799997

...

>KOG1100|consensus

Probab=98.04  E-value=2.3e-06  Score=75.83  Aligned_cols=47  Identities=30%  Similarity=0.930  Sum_probs=43.2

Q ss_pred             ccccccccCcceEeecCCCcccccchhhhhccCCCCCCcchhhcccc
Q psy7970          80 ECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKIE  126 (290)
Q Consensus        80 ~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~~~Cp~Cr~~i~~~~~i~  126 (290)
                      .|..|..+.+.++++||.|.++|..|...++.||+|+.++.+.+.++
T Consensus       160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~  206 (207)
T KOG1100|consen  160 SCRKCGEREATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVN  206 (207)
T ss_pred             cceecCcCCceEEeecccceEecccccccCccCCCCcChhhceeecc
Confidence            39999999999999999999999999998999999999998876543

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.98  E-value=1.5e-06  Score=56.74  Aligned_cols=33  Identities=39%  Similarity=1.260  Sum_probs=28.5

Q ss_pred             cccccccccccc-cc-cCCccchHHHhcCC------CCCCC
Q psy7970         247 CPVCLDRLKNMI-FL-CGHGTCQMCGDRMS------ECPIC  279 (290)
Q Consensus       247 C~IC~~~~~~~v-~~-CGH~fC~~C~~~~~------~CP~C  279 (290)
                      |+||++.+.+++ ++ |||.||..|+.+++      .||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999999997 54 99999999999763      58876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=97.88  E-value=5.9e-06  Score=53.74  Aligned_cols=38  Identities=39%  Similarity=1.184  Sum_probs=31.0

Q ss_pred             cccccccccccccc-c-cCCccchHHHhcC-----CCCCCCcccc
Q psy7970         246 MCPVCLDRLKNMIF-L-CGHGTCQMCGDRM-----SECPICRKAV  283 (290)
Q Consensus       246 ~C~IC~~~~~~~v~-~-CGH~fC~~C~~~~-----~~CP~CR~~i  283 (290)
                      .|+||++.+.+++. . |||.||..|+..|     ..||.||..+
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            48999999966643 4 9999999999865     3699998753

>KOG0287|consensus

Probab=97.85  E-value=2.9e-06  Score=78.85  Aligned_cols=45  Identities=22%  Similarity=0.755  Sum_probs=39.0

Q ss_pred             ccCCCccccccccccccccc-cCCccchHHHhcC----CCCCCCcccccc
Q psy7970         241 IKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRM----SECPICRKAVEK  285 (290)
Q Consensus       241 l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~----~~CP~CR~~i~~  285 (290)
                      |..-+.|-||.++|+.|++. |||+||..||+..    ..||.|+.+++.
T Consensus        20 lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~E   69 (442)
T KOG0287|consen   20 LDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTE   69 (442)
T ss_pred             hHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccch
Confidence            34558999999999999775 9999999999976    379999999865

>KOG2164|consensus

Probab=97.84  E-value=5e-06  Score=81.12  Aligned_cols=44  Identities=32%  Similarity=0.735  Sum_probs=38.4

Q ss_pred             CCccccccccccccccc-cCCccchHHHhcCC---------CCCCCcccccccc
Q psy7970         244 QTMCPVCLDRLKNMIFL-CGHGTCQMCGDRMS---------ECPICRKAVEKRI  287 (290)
Q Consensus       244 ~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~~---------~CP~CR~~i~~~~  287 (290)
                      +..||||++...-|+.+ |||.||..|+...|         .||+||..|..+.
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kd  239 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKD  239 (513)
T ss_pred             CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccc
Confidence            78999999999998775 99999999998653         6999999997644

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.74  E-value=7.1e-06  Score=74.87  Aligned_cols=46  Identities=28%  Similarity=0.662  Sum_probs=38.8

Q ss_pred             hccCCCccccccccccccccc-cCCccchHHHhcC----CCCCCCcccccc
Q psy7970         240 DIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRM----SECPICRKAVEK  285 (290)
Q Consensus       240 ~l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~----~~CP~CR~~i~~  285 (290)
                      .|...+.|-||.++++.|+.. |||+||+.||.+.    ..||.||..+..
T Consensus        21 ~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e   71 (391)
T COG5432          21 GLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE   71 (391)
T ss_pred             cchhHHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence            345568999999999999775 9999999999976    379999988643

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=97.70  E-value=9.2e-06  Score=54.04  Aligned_cols=26  Identities=31%  Similarity=0.985  Sum_probs=17.2

Q ss_pred             cccccccccc----ccc-ccCCccchHHHhcC
Q psy7970         247 CPVCLDRLKN----MIF-LCGHGTCQMCGDRM  273 (290)
Q Consensus       247 C~IC~~~~~~----~v~-~CGH~fC~~C~~~~  273 (290)
                      ||||.+ +.+    |+. .|||+||+.|+.++
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l   31 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKL   31 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHH
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHH
Confidence            899999 777    655 59999999999876

>KOG1100|consensus

Probab=97.69  E-value=1.9e-05  Score=69.94  Aligned_cols=98  Identities=18%  Similarity=0.342  Sum_probs=73.0

Q ss_pred             CCCCccccccccCcceEeecCCCcccccchhhhhccCCCCC--Ccchhh-------------------------cccccc
Q psy7970          76 VTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICR--EPVEKR-------------------------IKIEEC  128 (290)
Q Consensus        76 ~~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~~~Cp~Cr--~~i~~~-------------------------~~i~~C  128 (290)
                      .....+.++.+.+.-..+.+++|...+..++...+.++.+.  +++..+                         .....|
T Consensus        82 l~~~~~~~~~e~~~w~~~a~~ne~~~~~l~~nl~q~~~~~~~~~~~~~~~~~~~g~~~~~~~~s~~~~~~~~~~~~~~~C  161 (207)
T KOG1100|consen   82 LEERVKSLYVEAQIWRDRAQTNEATVNSLRTNLDQVLAQCPASAPAEERGQKSCGDREADDGKSSYVDPSVDNFKRMRSC  161 (207)
T ss_pred             ehhhhhhhhhhHHHHHHHHHhChHHHHHHHHHHHHHHHhcccccCchhhhccccCccccccccccccchhhhhhhccccc
Confidence            34456677777777777778888887777777666666661  011000                         111249


Q ss_pred             ccccccCCceEEeCCCCeecchhhHhcCCCCCCCCccccccccee
Q psy7970         129 MVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMV  173 (290)
Q Consensus       129 ~~C~~~~~~~~~~PCgH~~~C~~Ca~~~~~Cp~Cr~~i~~~~~~~  173 (290)
                      ..|....+.|+++||.|++.|..|....+.||+|+.+....+.++
T Consensus       162 r~C~~~~~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~  206 (207)
T KOG1100|consen  162 RKCGEREATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVN  206 (207)
T ss_pred             eecCcCCceEEeecccceEecccccccCccCCCCcChhhceeecc
Confidence            999999999999999999999999988899999999988776553

>KOG0311|consensus

Probab=97.66  E-value=4.9e-06  Score=77.76  Aligned_cols=53  Identities=34%  Similarity=0.709  Sum_probs=44.5

Q ss_pred             HHHHHHhccCCCccccccccccccccc--cCCccchHHHhcC-----CCCCCCccccccc
Q psy7970         234 LQQQLQDIKEQTMCPVCLDRLKNMIFL--CGHGTCQMCGDRM-----SECPICRKAVEKR  286 (290)
Q Consensus       234 l~~~~~~l~e~~~C~IC~~~~~~~v~~--CGH~fC~~C~~~~-----~~CP~CR~~i~~~  286 (290)
                      ..-.++.+.-+++||||+++++..++.  |+|.||..||...     ..||.||+....+
T Consensus        33 i~~~l~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk   92 (381)
T KOG0311|consen   33 IMVDLAMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK   92 (381)
T ss_pred             heecHHHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence            445667778899999999999999664  9999999999854     4799999988554

>smart00184 RING Ring finger

Probab=97.65  E-value=1.3e-05  Score=50.19  Aligned_cols=33  Identities=48%  Similarity=1.323  Sum_probs=27.6

Q ss_pred             cccccccccccccc-cCCccchHHHhcC-----CCCCCC
Q psy7970         247 CPVCLDRLKNMIFL-CGHGTCQMCGDRM-----SECPIC  279 (290)
Q Consensus       247 C~IC~~~~~~~v~~-CGH~fC~~C~~~~-----~~CP~C  279 (290)
                      |+||++...+++++ |||.||..|+..|     ..||.|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            78999998888665 9999999999865     358876

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG0824|consensus

Probab=97.61  E-value=2.1e-05  Score=72.20  Aligned_cols=137  Identities=20%  Similarity=0.415  Sum_probs=82.0

Q ss_pred             hccccccccccccCCceEEeCCCCeecchhhHh-----cCCCCCCCCcccccccceeeecCCCCccccccCCCChhhhhh
Q psy7970         122 RIKIEECMVCSLKKASVLFKPCYHMVACESCAS-----LMKKCVQCRTQIDHMHPMVVCCGGPGIISEVQHTTDPAEEEN  196 (290)
Q Consensus       122 ~~~i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~-----~~~~Cp~Cr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~n  196 (290)
                      +.+..+|.+|+......+.+||+|. +|..|..     .++.|++||.+|++.+-...            +.+   ++..
T Consensus         4 ~~~~~eC~IC~nt~n~Pv~l~C~Hk-FCyiCiKGsy~ndk~~CavCR~pids~i~~~p------------sl~---~~LK   67 (324)
T KOG0824|consen    4 RTKKKECLICYNTGNCPVNLYCFHK-FCYICIKGSYKNDKKTCAVCRFPIDSTIDFEP------------SLK---YRLK   67 (324)
T ss_pred             cccCCcceeeeccCCcCccccccch-hhhhhhcchhhcCCCCCceecCCCCcchhcch------------hhh---hhhc
Confidence            3445699999999999999999999 9999995     35679999999988643200            000   1111


Q ss_pred             hhccCCCCccchhhhccccccccccCCCCCChhHHHHHHHHHHhccCCCccccccccccccccc--cCCccchHHHhcCC
Q psy7970         197 AVALSPNTSAATLVEASTSGALMNNGSRDTSTSDIQKLQQQLQDIKEQTMCPVCLDRLKNMIFL--CGHGTCQMCGDRMS  274 (290)
Q Consensus       197 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~l~e~~~C~IC~~~~~~~v~~--CGH~fC~~C~~~~~  274 (290)
                      ++++.... +       +..++..  ...+.+.++..++...-...+.-.|-+|...+.-|...  |+|.||..|-..+.
T Consensus        68 ~n~p~~~~-~-------t~~~~~r--ag~n~nqnvp~~~~dA~~~~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~  137 (324)
T KOG0824|consen   68 PNTPEVKR-I-------TRSQAKR--AGVNGNQNVPYMKEDAGFQQDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNF  137 (324)
T ss_pred             CCCCCCCc-c-------cccHHhh--hhhhccCCcchhhhhccccCCccceeeeeeeEEecccccCceeeeeecCCchhh
Confidence            11100000 0       0000000  00111222222333333445667888999988888663  99999998877663


Q ss_pred             ----CCCCCccccc
Q psy7970         275 ----ECPICRKAVE  284 (290)
Q Consensus       275 ----~CP~CR~~i~  284 (290)
                          .||.|+..+.
T Consensus       138 ~~~~~~~d~~~~~~  151 (324)
T KOG0824|consen  138 AMGNDCPDCRGKIS  151 (324)
T ss_pred             hhhhccchhhcCcC
Confidence                5777776543

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=97.44  E-value=4.6e-05  Score=56.34  Aligned_cols=47  Identities=19%  Similarity=0.424  Sum_probs=35.8

Q ss_pred             cCCCccccccccccccccc-cCCccchHHHhcC-----CCCCCCccccccccc
Q psy7970         242 KEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRM-----SECPICRKAVEKRIL  288 (290)
Q Consensus       242 ~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~-----~~CP~CR~~i~~~~~  288 (290)
                      -+.+.|||+.+++.+||+. +||+|.+.++..|     ..||++++++....+
T Consensus         2 P~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l   54 (73)
T PF04564_consen    2 PDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDL   54 (73)
T ss_dssp             SGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGS
T ss_pred             CcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccc
Confidence            3678999999999999885 9999999999977     369999999877554

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=4.3e-05  Score=69.07  Aligned_cols=41  Identities=32%  Similarity=0.601  Sum_probs=35.8

Q ss_pred             CCCcccccccccccccc-ccCCccchHHHhcCC------CCCCCcccc
Q psy7970         243 EQTMCPVCLDRLKNMIF-LCGHGTCQMCGDRMS------ECPICRKAV  283 (290)
Q Consensus       243 e~~~C~IC~~~~~~~v~-~CGH~fC~~C~~~~~------~CP~CR~~i  283 (290)
                      -+..|+||++...+|+. +|||.||..|+..+|      .||.||..+
T Consensus       214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~  261 (271)
T COG5574         214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKV  261 (271)
T ss_pred             cccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhc
Confidence            46889999999999966 599999999999833      599999876

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=97.43  E-value=0.0001  Score=49.02  Aligned_cols=28  Identities=36%  Similarity=0.812  Sum_probs=24.7

Q ss_pred             CceEEeCCCCeecchhhHhcCC----CCCCCCc
Q psy7970         136 ASVLFKPCYHMVACESCASLMK----KCVQCRT  164 (290)
Q Consensus       136 ~~~~~~PCgH~~~C~~Ca~~~~----~Cp~Cr~  164 (290)
                      ...++++|||. +|..|+..+.    .||+||+
T Consensus        13 ~~~~l~~CgH~-~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen   13 RRPRLTSCGHI-FCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCeEEcccCCH-HHHHHHHhhcCCCCCCcCCCC
Confidence            45789999999 9999998776    9999984

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=97.42  E-value=0.00011  Score=47.51  Aligned_cols=34  Identities=29%  Similarity=0.745  Sum_probs=27.0

Q ss_pred             cccccccCCce-EEeCCCCeecchhhHhc----CCCCCCC
Q psy7970         128 CMVCSLKKASV-LFKPCYHMVACESCASL----MKKCVQC  162 (290)
Q Consensus       128 C~~C~~~~~~~-~~~PCgH~~~C~~Ca~~----~~~Cp~C  162 (290)
                      |.+|++...+. +++||||. +|..|+.+    ..+||.|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHCcCCCcCC
Confidence            68899988888 78999999 99999954    4688876

>KOG0823|consensus

Probab=97.09  E-value=0.0003  Score=62.55  Aligned_cols=48  Identities=21%  Similarity=0.566  Sum_probs=41.2

Q ss_pred             ccccccccccCCceEEeCCCCeecchhhHhc-------CCCCCCCCcccc--ccccee
Q psy7970         125 IEECMVCSLKKASVLFKPCYHMVACESCASL-------MKKCVQCRTQID--HMHPMV  173 (290)
Q Consensus       125 i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~-------~~~Cp~Cr~~i~--~~~~~~  173 (290)
                      .++|-||++...+.|+..|||+ +|..|...       .+.||+|+..|.  +++|+|
T Consensus        47 ~FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY  103 (230)
T KOG0823|consen   47 FFDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY  103 (230)
T ss_pred             ceeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence            4699999999999999999999 99999953       478999996654  577887

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=96.98  E-value=0.00047  Score=60.17  Aligned_cols=48  Identities=21%  Similarity=0.551  Sum_probs=39.5

Q ss_pred             ccccccccccCCceEEeCCCCeecchhhHhc--------------------CCCCCCCCccccc--cccee
Q psy7970         125 IEECMVCSLKKASVLFKPCYHMVACESCASL--------------------MKKCVQCRTQIDH--MHPMV  173 (290)
Q Consensus       125 i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~--------------------~~~Cp~Cr~~i~~--~~~~~  173 (290)
                      ...|.||++...+.++++|||. +|..|...                    ...||.||..|..  .+++|
T Consensus        18 ~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy   87 (193)
T PLN03208         18 DFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY   87 (193)
T ss_pred             ccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence            3689999999999999999998 99999953                    1379999999876  44554

>smart00184 RING Ring finger

Probab=96.84  E-value=0.001  Score=41.35  Aligned_cols=34  Identities=29%  Similarity=0.732  Sum_probs=28.3

Q ss_pred             cccccccCCceEEeCCCCeecchhhHhc-----CCCCCCC
Q psy7970         128 CMVCSLKKASVLFKPCYHMVACESCASL-----MKKCVQC  162 (290)
Q Consensus       128 C~~C~~~~~~~~~~PCgH~~~C~~Ca~~-----~~~Cp~C  162 (290)
                      |.+|.+.....+++||||. +|..|...     ..+||.|
T Consensus         1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence            6788888889999999999 99999963     3568876

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=96.84  E-value=0.00068  Score=44.82  Aligned_cols=36  Identities=33%  Similarity=0.696  Sum_probs=26.6

Q ss_pred             cccccccc---CCceEEeCCCCeecchhhHhc----CCCCCCCC
Q psy7970         127 ECMVCSLK---KASVLFKPCYHMVACESCASL----MKKCVQCR  163 (290)
Q Consensus       127 ~C~~C~~~---~~~~~~~PCgH~~~C~~Ca~~----~~~Cp~Cr  163 (290)
                      .|.||++.   ...++.+||||. ++..|..+    -..||.||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHHSSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHhCCcCCccC
Confidence            35556543   457788999998 99999953    47999997

...

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=96.82  E-value=0.00085  Score=44.27  Aligned_cols=27  Identities=30%  Similarity=0.583  Sum_probs=23.0

Q ss_pred             cccccccCCceEEeCCCCeecchhhHhc
Q psy7970         128 CMVCSLKKASVLFKPCYHMVACESCASL  155 (290)
Q Consensus       128 C~~C~~~~~~~~~~PCgH~~~C~~Ca~~  155 (290)
                      |.+|++-..+.+.++|||. +|..|..+
T Consensus         1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~   27 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHS-FCRSCLER   27 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSE-EEHHHHHH
T ss_pred             CCccchhhCCccccCCcCH-HHHHHHHH
Confidence            7899999999999999999 99999964

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=96.77  E-value=0.0013  Score=42.30  Aligned_cols=39  Identities=38%  Similarity=0.850  Sum_probs=28.4

Q ss_pred             ccccccccC-CceEEeCCCCeecchhhHhc-----CCCCCCCCccc
Q psy7970         127 ECMVCSLKK-ASVLFKPCYHMVACESCASL-----MKKCVQCRTQI  166 (290)
Q Consensus       127 ~C~~C~~~~-~~~~~~PCgH~~~C~~Ca~~-----~~~Cp~Cr~~i  166 (290)
                      .|.+|.+.. ..+.+.||||. +|..|...     ...||.|+..+
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence            366777766 44455569999 99999952     45799999753

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.71  E-value=0.0011  Score=43.03  Aligned_cols=34  Identities=29%  Similarity=0.714  Sum_probs=27.5

Q ss_pred             cccccccCCceE-EeCCCCeecchhhHhc------CCCCCCC
Q psy7970         128 CMVCSLKKASVL-FKPCYHMVACESCASL------MKKCVQC  162 (290)
Q Consensus       128 C~~C~~~~~~~~-~~PCgH~~~C~~Ca~~------~~~Cp~C  162 (290)
                      |.+|.+...... ++||||. +|..|..+      ..+||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence            677888777777 9999999 99999953      3478876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG0320|consensus

Probab=96.67  E-value=0.0007  Score=57.99  Aligned_cols=44  Identities=27%  Similarity=0.651  Sum_probs=35.1

Q ss_pred             ccccccccccCCceE-E-eCCCCeecchhhHhc----CCCCCCCCcccccc
Q psy7970         125 IEECMVCSLKKASVL-F-KPCYHMVACESCASL----MKKCVQCRTQIDHM  169 (290)
Q Consensus       125 i~~C~~C~~~~~~~~-~-~PCgH~~~C~~Ca~~----~~~Cp~Cr~~i~~~  169 (290)
                      .|.|.+|++.....+ + .-|||+ +|..|+.+    -.+||.||+.|...
T Consensus       131 ~~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~~~~CP~C~kkIt~k  180 (187)
T KOG0320|consen  131 TYKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKNTNKCPTCRKKITHK  180 (187)
T ss_pred             ccCCCceecchhhccccccccchh-HHHHHHHHHHHhCCCCCCcccccchh
Confidence            489999988755544 3 789999 99999964    36999999987763

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.63  E-value=0.00076  Score=49.89  Aligned_cols=35  Identities=31%  Similarity=0.878  Sum_probs=26.9

Q ss_pred             cccccccccccc-------------cc-ccCCccchHHHhcC----CCCCCCc
Q psy7970         246 MCPVCLDRLKNM-------------IF-LCGHGTCQMCGDRM----SECPICR  280 (290)
Q Consensus       246 ~C~IC~~~~~~~-------------v~-~CGH~fC~~C~~~~----~~CP~CR  280 (290)
                      .|.||++.+.++             +. .|||.|-..|+.+|    ..||+||
T Consensus        21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            499999988222             22 39999999999987    4799997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG0317|consensus

Probab=96.56  E-value=0.0011  Score=60.85  Aligned_cols=45  Identities=24%  Similarity=0.597  Sum_probs=38.8

Q ss_pred             ccccccccccCCceEEeCCCCeecchhhHhc----CCCCCCCCccccccc
Q psy7970         125 IEECMVCSLKKASVLFKPCYHMVACESCASL----MKKCVQCRTQIDHMH  170 (290)
Q Consensus       125 i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~----~~~Cp~Cr~~i~~~~  170 (290)
                      .+.|.+|++...+..-+||||. +|..|...    -..||.||.......
T Consensus       239 ~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~ek~eCPlCR~~~~psk  287 (293)
T KOG0317|consen  239 TRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSEKAECPLCREKFQPSK  287 (293)
T ss_pred             CCceEEEecCCCCCCcCcCcch-HHHHHHHHHHccccCCCcccccCCCcc
Confidence            3799999999999999999999 99999953    357999998876553

>PHA02929 N1R/p28-like protein; Provisional

Probab=96.53  E-value=0.0018  Score=58.57  Aligned_cols=47  Identities=26%  Similarity=0.580  Sum_probs=36.1

Q ss_pred             ccccccccccCCc--------eEEeCCCCeecchhhHhc----CCCCCCCCcccccccce
Q psy7970         125 IEECMVCSLKKAS--------VLFKPCYHMVACESCASL----MKKCVQCRTQIDHMHPM  172 (290)
Q Consensus       125 i~~C~~C~~~~~~--------~~~~PCgH~~~C~~Ca~~----~~~Cp~Cr~~i~~~~~~  172 (290)
                      -.+|.+|++...+        .++.||||. +|..|..+    ...||.||.++..+++.
T Consensus       174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~  232 (238)
T PHA02929        174 DKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKEKNTCPVCRTPFISVIKS  232 (238)
T ss_pred             CCCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHhcCCCCCCCCCEeeEEeee
Confidence            3589999886432        356789998 99999953    46999999998876543

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=96.30  E-value=0.0023  Score=44.53  Aligned_cols=43  Identities=23%  Similarity=0.661  Sum_probs=36.3

Q ss_pred             cccccccccCCceEEeCCCCeecchhhHh--cCCCCCCCCcccccc
Q psy7970         126 EECMVCSLKKASVLFKPCYHMVACESCAS--LMKKCVQCRTQIDHM  169 (290)
Q Consensus       126 ~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~--~~~~Cp~Cr~~i~~~  169 (290)
                      ..|+.|......-+++||||+ +|..|..  +-..||+|..+++..
T Consensus         8 ~~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~rYngCPfC~~~~~~~   52 (55)
T PF14447_consen    8 QPCVFCGFVGTKGTVLPCGHL-ICDNCFPGERYNGCPFCGTPFEFD   52 (55)
T ss_pred             eeEEEccccccccccccccce-eeccccChhhccCCCCCCCcccCC
Confidence            467778888888899999999 9999985  567999999998754

>KOG2660|consensus

Probab=96.28  E-value=0.001  Score=62.05  Aligned_cols=51  Identities=24%  Similarity=0.561  Sum_probs=42.2

Q ss_pred             HHHhccCCCcccccccccccccc-c-cCCccchHHHhcC----CCCCCCcccccccc
Q psy7970         237 QLQDIKEQTMCPVCLDRLKNMIF-L-CGHGTCQMCGDRM----SECPICRKAVEKRI  287 (290)
Q Consensus       237 ~~~~l~e~~~C~IC~~~~~~~v~-~-CGH~fC~~C~~~~----~~CP~CR~~i~~~~  287 (290)
                      .+.++....+|.+|-.++.|+++ . |-|+||++||.+.    .+||.|...|-+..
T Consensus         8 k~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~   64 (331)
T KOG2660|consen    8 KLTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTH   64 (331)
T ss_pred             hhhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCcc
Confidence            34556778999999999999966 3 9999999999976    48999988776544

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=96.24  E-value=0.0012  Score=45.91  Aligned_cols=29  Identities=41%  Similarity=0.628  Sum_probs=17.5

Q ss_pred             HHHHHHHHHhCCCCCcccccCCCCCCCCC
Q psy7970          13 SASIACFLAGNGADLSIKNKKGQTPLDLC   41 (290)
Q Consensus        13 ~~aiacfL~~~Gadl~~~n~~g~tpldl~   41 (290)
                      ...++-+|++.|+|++++|..|+|||+++
T Consensus        28 ~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen   28 HSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             cHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            34678889999999999999999999864

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.20  E-value=0.0021  Score=58.33  Aligned_cols=40  Identities=28%  Similarity=0.714  Sum_probs=35.6

Q ss_pred             cccccccccCCceEEeCCCCeecchhhHhc------CCCCCCCCccc
Q psy7970         126 EECMVCSLKKASVLFKPCYHMVACESCASL------MKKCVQCRTQI  166 (290)
Q Consensus       126 ~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~------~~~Cp~Cr~~i  166 (290)
                      |+|.+|++.+.+....||||. +|-.|..-      ..+||.||..+
T Consensus       216 ~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~  261 (271)
T COG5574         216 YKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKV  261 (271)
T ss_pred             cceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhc
Confidence            689999999999999999999 99999853      46899999764

>PHA02926 zinc finger-like protein; Provisional

Probab=95.99  E-value=0.0023  Score=56.83  Aligned_cols=47  Identities=30%  Similarity=0.670  Sum_probs=34.1

Q ss_pred             cccccccccccCCc---------eEEeCCCCeecchhhHhcC----------CCCCCCCcccccccc
Q psy7970         124 KIEECMVCSLKKAS---------VLFKPCYHMVACESCASLM----------KKCVQCRTQIDHMHP  171 (290)
Q Consensus       124 ~i~~C~~C~~~~~~---------~~~~PCgH~~~C~~Ca~~~----------~~Cp~Cr~~i~~~~~  171 (290)
                      +-.+|.+|++....         -++.+|+|. +|..|....          +.||+||+......+
T Consensus       169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p  234 (242)
T PHA02926        169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRNITM  234 (242)
T ss_pred             CCCCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence            34578888775321         367799999 999999643          249999999876544

>KOG1785|consensus

Probab=95.88  E-value=0.0031  Score=60.26  Aligned_cols=48  Identities=31%  Similarity=0.806  Sum_probs=42.3

Q ss_pred             cccccccccCCceEEeCCCCeecchhhHhc------CCCCCCCCcccccccceee
Q psy7970         126 EECMVCSLKKASVLFKPCYHMVACESCASL------MKKCVQCRTQIDHMHPMVV  174 (290)
Q Consensus       126 ~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~------~~~Cp~Cr~~i~~~~~~~~  174 (290)
                      ++|.||-+...++.+-||||. .|..|...      .+.||+||-.|....+++|
T Consensus       370 eLCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcEIKGte~vii  423 (563)
T KOG1785|consen  370 ELCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVII  423 (563)
T ss_pred             HHHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeEeccccceee
Confidence            599999999999999999999 99999853      4699999999988777644

>KOG2879|consensus

Probab=95.87  E-value=0.0047  Score=56.36  Aligned_cols=43  Identities=35%  Similarity=0.690  Sum_probs=36.2

Q ss_pred             cCCCcccccccccccccc-c-cCCccchHHHhcC------CCCCCCccccc
Q psy7970         242 KEQTMCPVCLDRLKNMIF-L-CGHGTCQMCGDRM------SECPICRKAVE  284 (290)
Q Consensus       242 ~e~~~C~IC~~~~~~~v~-~-CGH~fC~~C~~~~------~~CP~CR~~i~  284 (290)
                      .....||+|.+.+..|.. . |||.||+.|+...      +.||.|..+..
T Consensus       237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            456899999999999944 4 9999999999964      47999988764

>KOG0297|consensus

Probab=95.84  E-value=0.0045  Score=60.00  Aligned_cols=46  Identities=30%  Similarity=0.885  Sum_probs=39.8

Q ss_pred             ccCCCcccccccccccccc--ccCCccchHHHhcCC----CCCCCccccccc
Q psy7970         241 IKEQTMCPVCLDRLKNMIF--LCGHGTCQMCGDRMS----ECPICRKAVEKR  286 (290)
Q Consensus       241 l~e~~~C~IC~~~~~~~v~--~CGH~fC~~C~~~~~----~CP~CR~~i~~~  286 (290)
                      +++.+.|++|+..+.+|+.  .|||.||..|+..+.    .||.|+......
T Consensus        18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~   69 (391)
T KOG0297|consen   18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQA   69 (391)
T ss_pred             CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchh
Confidence            6788999999999999977  599999999999873    799998876543

>KOG0978|consensus

Probab=95.80  E-value=0.0024  Score=65.30  Aligned_cols=42  Identities=26%  Similarity=0.751  Sum_probs=37.4

Q ss_pred             ccccccccccCCceEEeCCCCeecchhhHh-----cCCCCCCCCcccc
Q psy7970         125 IEECMVCSLKKASVLFKPCYHMVACESCAS-----LMKKCVQCRTQID  167 (290)
Q Consensus       125 i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~-----~~~~Cp~Cr~~i~  167 (290)
                      +-.|.+|..++.++++.-|||. +|+.|..     |.++||.|...+.
T Consensus       643 ~LkCs~Cn~R~Kd~vI~kC~H~-FC~~Cvq~r~etRqRKCP~Cn~aFg  689 (698)
T KOG0978|consen  643 LLKCSVCNTRWKDAVITKCGHV-FCEECVQTRYETRQRKCPKCNAAFG  689 (698)
T ss_pred             ceeCCCccCchhhHHHHhcchH-HHHHHHHHHHHHhcCCCCCCCCCCC
Confidence            3479999999999999999999 9999995     6799999998864

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.75  E-value=0.012  Score=55.41  Aligned_cols=49  Identities=33%  Similarity=0.692  Sum_probs=40.4

Q ss_pred             CCCCCCCCccccccccCcceEeecCCCcccccchhhhh------ccCCCCCCcchh
Q psy7970          72 TEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRV------KKCLICREPVEK  121 (290)
Q Consensus        72 ~~~~~~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~------~~Cp~Cr~~i~~  121 (290)
                      ....++...|.||-..-.-..++||+|.. |..|+-++      +.||+||..-..
T Consensus        55 ddtDEen~~C~ICA~~~TYs~~~PC~H~~-CH~Ca~RlRALY~~K~C~~CrTE~e~  109 (493)
T COG5236          55 DDTDEENMNCQICAGSTTYSARYPCGHQI-CHACAVRLRALYMQKGCPLCRTETEA  109 (493)
T ss_pred             cccccccceeEEecCCceEEEeccCCchH-HHHHHHHHHHHHhccCCCccccccce
Confidence            34456667899999998889999999995 99999876      689999976544

>KOG4159|consensus

Probab=95.73  E-value=0.0042  Score=60.16  Aligned_cols=45  Identities=38%  Similarity=0.854  Sum_probs=38.6

Q ss_pred             ccCCCccccccccccccccc-cCCccchHHHhcC----CCCCCCcccccc
Q psy7970         241 IKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRM----SECPICRKAVEK  285 (290)
Q Consensus       241 l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~----~~CP~CR~~i~~  285 (290)
                      +..++.|.||+..+.+||.+ |||.||..|+.+.    ..||.||.++.+
T Consensus        81 ~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   81 IRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             ccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence            36789999999999999775 9999999997764    479999998764

>KOG3002|consensus

Probab=95.72  E-value=0.0052  Score=57.40  Aligned_cols=43  Identities=37%  Similarity=0.990  Sum_probs=37.5

Q ss_pred             CCCcccccccccccccccc--CCccchHHHhcC-CCCCCCcccccc
Q psy7970         243 EQTMCPVCLDRLKNMIFLC--GHGTCQMCGDRM-SECPICRKAVEK  285 (290)
Q Consensus       243 e~~~C~IC~~~~~~~v~~C--GH~fC~~C~~~~-~~CP~CR~~i~~  285 (290)
                      +-+.||||.+.+..|+++|  ||..|..|-.++ ..||.||.++.+
T Consensus        47 ~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~~~CP~Cr~~~g~   92 (299)
T KOG3002|consen   47 DLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVSNKCPTCRLPIGN   92 (299)
T ss_pred             hhccCchhhccCcccceecCCCcEehhhhhhhhcccCCcccccccc
Confidence            3489999999999999997  799999999555 589999999863

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=95.67  E-value=0.006  Score=40.52  Aligned_cols=18  Identities=28%  Similarity=0.811  Sum_probs=13.7

Q ss_pred             eEEeCCCCeecchhhHhcC
Q psy7970         138 VLFKPCYHMVACESCASLM  156 (290)
Q Consensus       138 ~~~~PCgH~~~C~~Ca~~~  156 (290)
                      .+.+||||. +|++|..++
T Consensus        14 P~~L~CGH~-~c~~cl~~l   31 (43)
T PF13445_consen   14 PMVLPCGHV-FCKDCLQKL   31 (43)
T ss_dssp             EEE-SSS-E-EEHHHHHHH
T ss_pred             CEEEeCccH-HHHHHHHHH
Confidence            688999999 999998654

>KOG2164|consensus

Probab=95.54  E-value=0.0077  Score=59.28  Aligned_cols=49  Identities=22%  Similarity=0.507  Sum_probs=41.5

Q ss_pred             ccccccccccCCceEEeCCCCeecchhhHh---------cCCCCCCCCccccc--ccceee
Q psy7970         125 IEECMVCSLKKASVLFKPCYHMVACESCAS---------LMKKCVQCRTQIDH--MHPMVV  174 (290)
Q Consensus       125 i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~---------~~~~Cp~Cr~~i~~--~~~~~~  174 (290)
                      -+.|.||++.+..++.+-|||. +|-.|.-         ..++||+||..|..  ..++++
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~  245 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFI  245 (513)
T ss_pred             CCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccccceeeeee
Confidence            4689999999999999999999 9999984         35799999999887  556543

>TIGR00599 rad18 DNA repair protein rad18

Probab=95.51  E-value=0.0081  Score=58.17  Aligned_cols=43  Identities=23%  Similarity=0.525  Sum_probs=36.4

Q ss_pred             ccccccccccCCceEEeCCCCeecchhhHhc----CCCCCCCCccccc
Q psy7970         125 IEECMVCSLKKASVLFKPCYHMVACESCASL----MKKCVQCRTQIDH  168 (290)
Q Consensus       125 i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~----~~~Cp~Cr~~i~~  168 (290)
                      ...|.||.+.....+++||||. +|..|...    ...||.|+..+..
T Consensus        26 ~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~~~~CP~Cr~~~~~   72 (397)
T TIGR00599        26 SLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSNQPKCPLCRAEDQE   72 (397)
T ss_pred             ccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhCCCCCCCCCCcccc
Confidence            3689999998888899999999 99999963    3589999988654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG4692|consensus

Probab=95.48  E-value=0.0054  Score=57.81  Aligned_cols=43  Identities=28%  Similarity=0.764  Sum_probs=38.5

Q ss_pred             cccccccccCCceEEeCCCCeecchhhHh----cCCCCCCCCcccccc
Q psy7970         126 EECMVCSLKKASVLFKPCYHMVACESCAS----LMKKCVQCRTQIDHM  169 (290)
Q Consensus       126 ~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~----~~~~Cp~Cr~~i~~~  169 (290)
                      ..|.||+..+.+++|.||+|. .|.+|..    ..|.|-+|+.++...
T Consensus       423 ~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlmN~k~CFfCktTv~~~  469 (489)
T KOG4692|consen  423 NLCPICYAGPINAVFAPCSHR-SCYGCITQHLMNCKRCFFCKTTVIDV  469 (489)
T ss_pred             ccCcceecccchhhccCCCCc-hHHHHHHHHHhcCCeeeEecceeeeh
Confidence            489999999999999999999 9999995    358999999987663

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=95.36  E-value=0.011  Score=41.22  Aligned_cols=43  Identities=33%  Similarity=0.778  Sum_probs=35.9

Q ss_pred             CCccccccccCcceEeecCCCcccccchhh--hhccCCCCCCcchh
Q psy7970          78 LDECRICSDLKRDILFQPCGHVACCSVCAP--RVKKCLICREPVEK  121 (290)
Q Consensus        78 ~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~--~~~~Cp~Cr~~i~~  121 (290)
                      ...|+.|......-+++||||++ |..|..  +..-||+|..++..
T Consensus         7 ~~~~~~~~~~~~~~~~~pCgH~I-~~~~f~~~rYngCPfC~~~~~~   51 (55)
T PF14447_consen    7 EQPCVFCGFVGTKGTVLPCGHLI-CDNCFPGERYNGCPFCGTPFEF   51 (55)
T ss_pred             ceeEEEcccccccccccccccee-eccccChhhccCCCCCCCcccC
Confidence            45688888888889999999996 888885  45799999988753

>smart00504 Ubox Modified RING finger domain

Probab=95.30  E-value=0.021  Score=40.11  Aligned_cols=40  Identities=5%  Similarity=-0.081  Sum_probs=33.1

Q ss_pred             ccccccccCCceEEeCCCCeecchhhHhc----CCCCCCCCcccc
Q psy7970         127 ECMVCSLKKASVLFKPCYHMVACESCASL----MKKCVQCRTQID  167 (290)
Q Consensus       127 ~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~----~~~Cp~Cr~~i~  167 (290)
                      .|.+|.+...+.+.+||||. +|..|...    -..||.|+.++.
T Consensus         3 ~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~~~~cP~~~~~~~   46 (63)
T smart00504        3 LCPISLEVMKDPVILPSGQT-YERRAIEKWLLSHGTDPVTGQPLT   46 (63)
T ss_pred             CCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHHCCCCCCCcCCCC
Confidence            57788887778899999998 99999964    358999998863

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG1039|consensus

Probab=95.22  E-value=0.0086  Score=56.92  Aligned_cols=46  Identities=24%  Similarity=0.689  Sum_probs=39.0

Q ss_pred             cCCCccccccccccccc-----c---c-cCCccchHHHhcCC-----------CCCCCcccccccc
Q psy7970         242 KEQTMCPVCLDRLKNMI-----F---L-CGHGTCQMCGDRMS-----------ECPICRKAVEKRI  287 (290)
Q Consensus       242 ~e~~~C~IC~~~~~~~v-----~---~-CGH~fC~~C~~~~~-----------~CP~CR~~i~~~~  287 (290)
                      ..+..|-|||+...+..     |   + |-|.||..|+..|.           .||+||.+....+
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~  224 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN  224 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence            45789999999998887     5   5 99999999999883           5999999876544

>KOG0802|consensus

Probab=95.17  E-value=0.0074  Score=60.93  Aligned_cols=42  Identities=29%  Similarity=0.657  Sum_probs=35.6

Q ss_pred             cCCCccccccccccc-----ccc-ccCCccchHHHhcCC----CCCCCcccc
Q psy7970         242 KEQTMCPVCLDRLKN-----MIF-LCGHGTCQMCGDRMS----ECPICRKAV  283 (290)
Q Consensus       242 ~e~~~C~IC~~~~~~-----~v~-~CGH~fC~~C~~~~~----~CP~CR~~i  283 (290)
                      ..+..|+||+|.+..     +.. +|||.|+..|+..|.    .||+||..+
T Consensus       289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~  340 (543)
T KOG0802|consen  289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL  340 (543)
T ss_pred             hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence            357899999999988     433 599999999999984    899999954

>KOG0824|consensus

Probab=94.92  E-value=0.012  Score=54.36  Aligned_cols=48  Identities=29%  Similarity=0.615  Sum_probs=40.3

Q ss_pred             CCCCccccccccCcceEeecCCCcccccchhhh-----hccCCCCCCcchhhcc
Q psy7970          76 VTLDECRICSDLKRDILFQPCGHVACCSVCAPR-----VKKCLICREPVEKRIK  124 (290)
Q Consensus        76 ~~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~-----~~~Cp~Cr~~i~~~~~  124 (290)
                      ....+|.||+.....-+.+||+|.. |..|-..     ++.|++||.+|.+.+.
T Consensus         5 ~~~~eC~IC~nt~n~Pv~l~C~HkF-CyiCiKGsy~ndk~~CavCR~pids~i~   57 (324)
T KOG0824|consen    5 TKKKECLICYNTGNCPVNLYCFHKF-CYICIKGSYKNDKKTCAVCRFPIDSTID   57 (324)
T ss_pred             ccCCcceeeeccCCcCccccccchh-hhhhhcchhhcCCCCCceecCCCCcchh
Confidence            4567999999999999999999995 8888764     3679999999987553

>KOG4692|consensus

Probab=94.75  E-value=0.011  Score=55.75  Aligned_cols=45  Identities=29%  Similarity=0.764  Sum_probs=37.8

Q ss_pred             cCCCccccccccccccccc-cCCccchHHHhcC----CCCCCCccccccc
Q psy7970         242 KEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRM----SECPICRKAVEKR  286 (290)
Q Consensus       242 ~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~----~~CP~CR~~i~~~  286 (290)
                      .|+..||||..-..++||. |+|..|+.||.++    +.|=.|+.++...
T Consensus       420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~~  469 (489)
T KOG4692|consen  420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVIDV  469 (489)
T ss_pred             cccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeeeh
Confidence            3568999999999999995 9999999999975    4788888777543

>KOG1785|consensus

Probab=94.69  E-value=0.0099  Score=56.89  Aligned_cols=58  Identities=26%  Similarity=0.651  Sum_probs=43.9

Q ss_pred             hhHHHHHHHHHH---hccC-CCcccccccccccccc-ccCCccchHHHhcCC------CCCCCcccccc
Q psy7970         228 TSDIQKLQQQLQ---DIKE-QTMCPVCLDRLKNMIF-LCGHGTCQMCGDRMS------ECPICRKAVEK  285 (290)
Q Consensus       228 ~~~~~~l~~~~~---~l~e-~~~C~IC~~~~~~~v~-~CGH~fC~~C~~~~~------~CP~CR~~i~~  285 (290)
                      .+.++-.+++++   ++.. -..|.||-+.-+|.-+ +|||..|..|+..|.      .||+||-.|..
T Consensus       349 ~d~i~VtqEQyeLYceMgsTFeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG  417 (563)
T KOG1785|consen  349 QDRIKVTQEQYELYCEMGSTFELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG  417 (563)
T ss_pred             ccceeeeHHHHHHHHHccchHHHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence            344444555555   2222 3689999999999855 699999999999884      69999998854

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=94.53  E-value=0.023  Score=53.12  Aligned_cols=43  Identities=26%  Similarity=0.687  Sum_probs=31.6

Q ss_pred             CCcccccccc---CcceEee--cCCCcccccchhhhh-----ccCCCCCCcchh
Q psy7970          78 LDECRICSDL---KRDILFQ--PCGHVACCSVCAPRV-----KKCLICREPVEK  121 (290)
Q Consensus        78 ~~~C~iC~~~---~~~~~~~--PCgH~~~C~~Ca~~~-----~~Cp~Cr~~i~~  121 (290)
                      ...|.+|.+.   ..++.|+  ||||.. |..|..++     ..||.|+.++..
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~-C~sCv~~l~~~~~~~CP~C~~~lrk   55 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCVDLLFVRGSGSCPECDTPLRK   55 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCCCCCcc-cHHHHHHHhcCCCCCCCCCCCccch
Confidence            3579999983   3443232  999995 99999885     479999887754

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=94.47  E-value=0.015  Score=40.95  Aligned_cols=37  Identities=22%  Similarity=0.476  Sum_probs=25.7

Q ss_pred             cCCCccccccccccccccc--cCCccchHHHhcCC------CCCC
Q psy7970         242 KEQTMCPVCLDRLKNMIFL--CGHGTCQMCGDRMS------ECPI  278 (290)
Q Consensus       242 ~e~~~C~IC~~~~~~~v~~--CGH~fC~~C~~~~~------~CP~  278 (290)
                      .-.+.|||-+..+.+||..  |||.|-+..+..+.      .||.
T Consensus         9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen    9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            4568999999999999884  99999999998763      4876

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.44  E-value=0.021  Score=53.80  Aligned_cols=44  Identities=30%  Similarity=0.671  Sum_probs=38.8

Q ss_pred             ccccccccccCCceEEeCCCCeecchhhHhcC------CCCCCCCcccccc
Q psy7970         125 IEECMVCSLKKASVLFKPCYHMVACESCASLM------KKCVQCRTQIDHM  169 (290)
Q Consensus       125 i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~~------~~Cp~Cr~~i~~~  169 (290)
                      -..|.||-....-+..+||+|. .|..|+.|+      +.|++||..-+.+
T Consensus        61 n~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~V  110 (493)
T COG5236          61 NMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEAV  110 (493)
T ss_pred             cceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccceE
Confidence            3689999999999999999999 999999764      7999999876665

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=94.44  E-value=0.027  Score=52.65  Aligned_cols=26  Identities=38%  Similarity=0.936  Sum_probs=22.3

Q ss_pred             CCCCeecchhhHhcC-----CCCCCCCccccc
Q psy7970         142 PCYHMVACESCASLM-----KKCVQCRTQIDH  168 (290)
Q Consensus       142 PCgH~~~C~~Ca~~~-----~~Cp~Cr~~i~~  168 (290)
                      +|||. .|..|..++     ..||.|+.++.+
T Consensus        25 ~CGH~-~C~sCv~~l~~~~~~~CP~C~~~lrk   55 (309)
T TIGR00570        25 VCGHT-LCESCVDLLFVRGSGSCPECDTPLRK   55 (309)
T ss_pred             CCCCc-ccHHHHHHHhcCCCCCCCCCCCccch
Confidence            89999 999999763     489999988765

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=94.23  E-value=0.024  Score=43.10  Aligned_cols=26  Identities=27%  Similarity=0.636  Sum_probs=22.1

Q ss_pred             ccCCccchHHHhcCC-------CCCCCcccccc
Q psy7970         260 LCGHGTCQMCGDRMS-------ECPICRKAVEK  285 (290)
Q Consensus       260 ~CGH~fC~~C~~~~~-------~CP~CR~~i~~  285 (290)
                      .|+|.|=..||.+|.       .||+||+++.-
T Consensus        51 ~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~   83 (85)
T PF12861_consen   51 KCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF   83 (85)
T ss_pred             cCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence            399999999999872       69999998753

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=94.21  E-value=0.013  Score=39.96  Aligned_cols=33  Identities=27%  Similarity=0.485  Sum_probs=23.9

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchh
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNL   46 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~   46 (290)
                      ..++-+|++.|+|++.+|.+|.|||+++.--+.
T Consensus        14 ~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~   46 (54)
T PF13637_consen   14 LEIVKLLLEHGADINAQDEDGRTPLHYAAKNGN   46 (54)
T ss_dssp             HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccC
Confidence            478899999999999999999999998754433

...

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=94.14  E-value=0.014  Score=51.00  Aligned_cols=39  Identities=33%  Similarity=0.906  Sum_probs=32.7

Q ss_pred             CCccccccccccccccc-cCCccchHHHhcC----CCCCCCccc
Q psy7970         244 QTMCPVCLDRLKNMIFL-CGHGTCQMCGDRM----SECPICRKA  282 (290)
Q Consensus       244 ~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~----~~CP~CR~~  282 (290)
                      .+.|-||-.-+..||.. |||.||..|..+-    ..|-+|.+.
T Consensus       196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~  239 (259)
T COG5152         196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKA  239 (259)
T ss_pred             ceeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchh
Confidence            47999999999999775 9999999999864    368888654

>KOG0804|consensus

Probab=93.81  E-value=0.028  Score=54.61  Aligned_cols=43  Identities=35%  Similarity=0.809  Sum_probs=35.8

Q ss_pred             cCCCccccccccccccc---c--ccCCccchHHHhcCC--CCCCCccccc
Q psy7970         242 KEQTMCPVCLDRLKNMI---F--LCGHGTCQMCGDRMS--ECPICRKAVE  284 (290)
Q Consensus       242 ~e~~~C~IC~~~~~~~v---~--~CGH~fC~~C~~~~~--~CP~CR~~i~  284 (290)
                      -|-.+||||++++-..+   +  +|-|.|=..|+..||  .||+||-...
T Consensus       173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~scpvcR~~q~  222 (493)
T KOG0804|consen  173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDSSCPVCRYCQS  222 (493)
T ss_pred             ccCCCcchhHhhcCccccceeeeecccccchHHHhhcccCcChhhhhhcC
Confidence            56799999999887764   3  399999999999997  7999996543

>KOG1814|consensus

Probab=93.78  E-value=0.028  Score=54.04  Aligned_cols=30  Identities=37%  Similarity=0.812  Sum_probs=24.9

Q ss_pred             CCccccccccCc---ceEeecCCCcccccchhhh
Q psy7970          78 LDECRICSDLKR---DILFQPCGHVACCSVCAPR  108 (290)
Q Consensus        78 ~~~C~iC~~~~~---~~~~~PCgH~~~C~~Ca~~  108 (290)
                      .-.|-||++.+.   .+.|+||+|+ .|..|...
T Consensus       184 lf~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~kd  216 (445)
T KOG1814|consen  184 LFDCCICFEEQMGQHCFKFLPCSHV-FCKSCLKD  216 (445)
T ss_pred             cccceeeehhhcCcceeeecccchH-HHHHHHHH
Confidence            458999999875   5899999999 59999864

>KOG1813|consensus

Probab=93.76  E-value=0.028  Score=51.89  Aligned_cols=39  Identities=23%  Similarity=0.696  Sum_probs=33.7

Q ss_pred             Cccccccccccccccc-cCCccchHHHhcC----CCCCCCcccc
Q psy7970         245 TMCPVCLDRLKNMIFL-CGHGTCQMCGDRM----SECPICRKAV  283 (290)
Q Consensus       245 ~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~----~~CP~CR~~i  283 (290)
                      +.|-||...|.+||.. |||.||..|....    ..|.+|-+.+
T Consensus       242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t  285 (313)
T KOG1813|consen  242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQT  285 (313)
T ss_pred             ccccccccccccchhhcCCceeehhhhccccccCCcceeccccc
Confidence            5699999999999776 9999999999865    3699998765

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=93.72  E-value=0.031  Score=37.96  Aligned_cols=37  Identities=32%  Similarity=0.996  Sum_probs=17.5

Q ss_pred             ccccccccccc---ccc--cCCccchHHHhcCC-----CCCCCcccc
Q psy7970         247 CPVCLDRLKNM---IFL--CGHGTCQMCGDRMS-----ECPICRKAV  283 (290)
Q Consensus       247 C~IC~~~~~~~---v~~--CGH~fC~~C~~~~~-----~CP~CR~~i  283 (290)
                      ||+|.+.+-..   .++  ||+.+|..|+.+..     .||-||++.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            68888877322   344  99999999987653     699999874

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=93.70  E-value=0.05  Score=50.36  Aligned_cols=37  Identities=35%  Similarity=0.851  Sum_probs=32.7

Q ss_pred             Cccccccccccccccc--cCCccchHHHhcC-----CCCCCCcc
Q psy7970         245 TMCPVCLDRLKNMIFL--CGHGTCQMCGDRM-----SECPICRK  281 (290)
Q Consensus       245 ~~C~IC~~~~~~~v~~--CGH~fC~~C~~~~-----~~CP~CR~  281 (290)
                      +.||.|.-++++|+..  |||.||..|+...     +.||.|..
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence            8999999999999774  9999999999943     68999954

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.68  E-value=0.029  Score=52.04  Aligned_cols=42  Identities=26%  Similarity=0.752  Sum_probs=35.2

Q ss_pred             CCCcccccccccccc----ccccCCccchHHHhcCC-----CCCCCccccc
Q psy7970         243 EQTMCPVCLDRLKNM----IFLCGHGTCQMCGDRMS-----ECPICRKAVE  284 (290)
Q Consensus       243 e~~~C~IC~~~~~~~----v~~CGH~fC~~C~~~~~-----~CP~CR~~i~  284 (290)
                      .-..|.|||+.+...    +++|-|.|=..|+..|.     .||+||.++.
T Consensus       322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP  372 (374)
T COG5540         322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP  372 (374)
T ss_pred             CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence            347899999988665    55699999999999983     6999998864

>KOG4628|consensus

Probab=93.61  E-value=0.029  Score=53.25  Aligned_cols=40  Identities=28%  Similarity=0.752  Sum_probs=33.6

Q ss_pred             cccccccccccc----ccccCCccchHHHhcCC-----CCCCCcccccc
Q psy7970         246 MCPVCLDRLKNM----IFLCGHGTCQMCGDRMS-----ECPICRKAVEK  285 (290)
Q Consensus       246 ~C~IC~~~~~~~----v~~CGH~fC~~C~~~~~-----~CP~CR~~i~~  285 (290)
                      .|.||+|.+..-    +++|+|.|=..|+..|.     .||+|+..+..
T Consensus       231 ~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~  279 (348)
T KOG4628|consen  231 TCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT  279 (348)
T ss_pred             eEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence            999999988776    44599999999999882     49999987644

>KOG2177|consensus

Probab=93.41  E-value=0.023  Score=50.86  Aligned_cols=43  Identities=33%  Similarity=0.779  Sum_probs=36.9

Q ss_pred             CCCCCCccccccccCcceEeecCCCcccccchhhhh----ccCCCCCC
Q psy7970          74 DMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRV----KKCLICRE  117 (290)
Q Consensus        74 ~~~~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~----~~Cp~Cr~  117 (290)
                      ...+...|.||++.-.+..++||||.. |..|...+    ..||.||.
T Consensus         9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~-c~~C~~~~~~~~~~Cp~cr~   55 (386)
T KOG2177|consen    9 VLQEELTCPICLEYFREPVLLPCGHNF-CRACLTRSWEGPLSCPVCRP   55 (386)
T ss_pred             hccccccChhhHHHhhcCccccccchH-hHHHHHHhcCCCcCCcccCC
Confidence            445667899999999999999999995 99999875    48999993

>KOG0287|consensus

Probab=93.17  E-value=0.03  Score=52.63  Aligned_cols=43  Identities=21%  Similarity=0.561  Sum_probs=37.7

Q ss_pred             ccccccccccCCceEEeCCCCeecchhhHhc----CCCCCCCCccccc
Q psy7970         125 IEECMVCSLKKASVLFKPCYHMVACESCASL----MKKCVQCRTQIDH  168 (290)
Q Consensus       125 i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~----~~~Cp~Cr~~i~~  168 (290)
                      ...|.||.+-....+++||||. +|..|...    --.||.|++++..
T Consensus        23 lLRC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~~~p~CP~C~~~~~E   69 (442)
T KOG0287|consen   23 LLRCGICFEYFNIPMITPCSHT-FCSLCIRKFLSYKPQCPTCCVTVTE   69 (442)
T ss_pred             HHHHhHHHHHhcCceeccccch-HHHHHHHHHhccCCCCCceecccch
Confidence            4589999999999999999999 99999964    3599999998764

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=93.14  E-value=0.056  Score=51.44  Aligned_cols=42  Identities=31%  Similarity=0.777  Sum_probs=33.6

Q ss_pred             cCCCcccccccccccc-------------c-cccCCccchHHHhcC----CCCCCCcccc
Q psy7970         242 KEQTMCPVCLDRLKNM-------------I-FLCGHGTCQMCGDRM----SECPICRKAV  283 (290)
Q Consensus       242 ~e~~~C~IC~~~~~~~-------------v-~~CGH~fC~~C~~~~----~~CP~CR~~i  283 (290)
                      ..+..|.||||.+..+             - ++|||.+=-+|++.|    .+||+||.|+
T Consensus       285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~  344 (491)
T COG5243         285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV  344 (491)
T ss_pred             CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence            4678999999974332             2 359999999999987    4899999994

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=93.03  E-value=0.05  Score=50.21  Aligned_cols=41  Identities=22%  Similarity=0.463  Sum_probs=36.1

Q ss_pred             cccccccccCCceEEeCCCCeecchhhHhc----CCCCCCCCcccc
Q psy7970         126 EECMVCSLKKASVLFKPCYHMVACESCASL----MKKCVQCRTQID  167 (290)
Q Consensus       126 ~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~----~~~Cp~Cr~~i~  167 (290)
                      ..|.||.+.....+..||||. +|..|..+    ...||.||....
T Consensus        26 lrC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~~qp~CP~Cr~~~~   70 (391)
T COG5432          26 LRCRICDCRISIPCETTCGHT-FCSLCIRRHLGTQPFCPVCREDPC   70 (391)
T ss_pred             HHhhhhhheeecceecccccc-hhHHHHHHHhcCCCCCccccccHH
Confidence            589999999999999999999 99999964    469999997743

>KOG2177|consensus

Probab=92.46  E-value=0.046  Score=48.81  Aligned_cols=40  Identities=25%  Similarity=0.574  Sum_probs=34.6

Q ss_pred             cccccccccccCCceEEeCCCCeecchhhHhcC----CCCCCCCc
Q psy7970         124 KIEECMVCSLKKASVLFKPCYHMVACESCASLM----KKCVQCRT  164 (290)
Q Consensus       124 ~i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~~----~~Cp~Cr~  164 (290)
                      ....|.||++......++||||. +|..|....    -.||.||.
T Consensus        12 ~~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~~~~~Cp~cr~   55 (386)
T KOG2177|consen   12 EELTCPICLEYFREPVLLPCGHN-FCRACLTRSWEGPLSCPVCRP   55 (386)
T ss_pred             ccccChhhHHHhhcCccccccch-HhHHHHHHhcCCCcCCcccCC
Confidence            35689999998888899999999 999999764    59999993

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=92.13  E-value=0.058  Score=40.07  Aligned_cols=43  Identities=23%  Similarity=0.348  Sum_probs=35.4

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD   56 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~   56 (290)
                      ..++-||++.|+|++.+|..|.|||+++..-...+.++-+.+.
T Consensus        39 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~   81 (89)
T PF12796_consen   39 LEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLLLEH   81 (89)
T ss_dssp             HHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            4788999999999999999999999999777777776666644

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0804|consensus

Probab=92.08  E-value=0.16  Score=49.59  Aligned_cols=74  Identities=22%  Similarity=0.507  Sum_probs=55.4

Q ss_pred             CCCCCCCCccccccccCcc----eEeecCCCcccccchhhh--hccCCCCCCcc-hhhccccccccccccCCceEEeCCC
Q psy7970          72 TEDMVTLDECRICSDLKRD----ILFQPCGHVACCSVCAPR--VKKCLICREPV-EKRIKIEECMVCSLKKASVLFKPCY  144 (290)
Q Consensus        72 ~~~~~~~~~C~iC~~~~~~----~~~~PCgH~~~C~~Ca~~--~~~Cp~Cr~~i-~~~~~i~~C~~C~~~~~~~~~~PCg  144 (290)
                      ....++...|.||+++--.    ++-.+|.|..-|. |...  ...||+||--- ++......|..|.-....++++-||
T Consensus       169 ~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~-cl~~w~~~scpvcR~~q~p~~ve~~~c~~c~~~~~LwicliCg  247 (493)
T KOG0804|consen  169 PTGLTELPTCPVCLERMDSSTTGILTILCNHSFHCS-CLMKWWDSSCPVCRYCQSPSVVESSLCLACGCTEDLWICLICG  247 (493)
T ss_pred             CCCcccCCCcchhHhhcCccccceeeeecccccchH-HHhhcccCcChhhhhhcCcchhhhhhhhhhcccccEEEEEEcc
Confidence            3456777899999987533    2456999997543 3333  36999999543 4455677999999999999999999


Q ss_pred             Ce
Q psy7970         145 HM  146 (290)
Q Consensus       145 H~  146 (290)
                      |.
T Consensus       248 ~v  249 (493)
T KOG0804|consen  248 NV  249 (493)
T ss_pred             ce
Confidence            98

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=92.05  E-value=0.039  Score=51.89  Aligned_cols=44  Identities=32%  Similarity=0.983  Sum_probs=33.5

Q ss_pred             cCCCcccccccccccc---ccc--cCCccchHHHhcCC-----CCCCCcccccc
Q psy7970         242 KEQTMCPVCLDRLKNM---IFL--CGHGTCQMCGDRMS-----ECPICRKAVEK  285 (290)
Q Consensus       242 ~e~~~C~IC~~~~~~~---v~~--CGH~fC~~C~~~~~-----~CP~CR~~i~~  285 (290)
                      .|+-+||.|++.+-..   .|+  ||...|+.|+...+     .||.||...+.
T Consensus        12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d   65 (480)
T COG5175          12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD   65 (480)
T ss_pred             cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence            4555699999966443   554  99999999998653     79999987654

>KOG0515|consensus

Probab=91.94  E-value=0.15  Score=50.84  Aligned_cols=43  Identities=23%  Similarity=0.272  Sum_probs=36.9

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD   56 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~   56 (290)
                      +.|+-||+.+|||+|..|..|.|||+-++.-|-......+.+.
T Consensus       596 yeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~  638 (752)
T KOG0515|consen  596 YEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVES  638 (752)
T ss_pred             hHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhc
Confidence            4799999999999999999999999999877766666666644

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.75  E-value=0.16  Score=37.38  Aligned_cols=27  Identities=30%  Similarity=0.722  Sum_probs=20.2

Q ss_pred             CceEEeCCCCeecchhhHhc----CCCCCCCC
Q psy7970         136 ASVLFKPCYHMVACESCASL----MKKCVQCR  163 (290)
Q Consensus       136 ~~~~~~PCgH~~~C~~Ca~~----~~~Cp~Cr  163 (290)
                      ..++..+|||. +-..|..+    -..||.||
T Consensus        43 ~~i~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   43 CPIVWGPCGHI-FHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             S-EEEETTSEE-EEHHHHHHHHTTSSB-TTSS
T ss_pred             cceEecccCCC-EEHHHHHHHHhcCCcCCCCC
Confidence            44567799999 88999963    46999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG0825|consensus

Probab=91.55  E-value=0.042  Score=56.72  Aligned_cols=45  Identities=24%  Similarity=0.510  Sum_probs=37.5

Q ss_pred             CCCcccccccccccccc----ccCCccchHHHhcCC----CCCCCcccccccc
Q psy7970         243 EQTMCPVCLDRLKNMIF----LCGHGTCQMCGDRMS----ECPICRKAVEKRI  287 (290)
Q Consensus       243 e~~~C~IC~~~~~~~v~----~CGH~fC~~C~~~~~----~CP~CR~~i~~~~  287 (290)
                      ....||+|+.-+.+-..    .|+|.||..|+..|.    +||+||.-|.+.+
T Consensus       122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~  174 (1134)
T KOG0825|consen  122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVK  174 (1134)
T ss_pred             hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheee
Confidence            45689999998888733    399999999999984    7999999987654

>KOG0509|consensus

Probab=91.27  E-value=0.1  Score=52.61  Aligned_cols=48  Identities=25%  Similarity=0.368  Sum_probs=35.9

Q ss_pred             cchhHHHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970           9 DKKSSASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD   56 (290)
Q Consensus         9 ~~~~~~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~   56 (290)
                      -.+..+.++-+|+++|||++++|.+|-+||+|+..-.....++-++.+
T Consensus       120 ar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~  167 (600)
T KOG0509|consen  120 ARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSK  167 (600)
T ss_pred             HHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHh
Confidence            346667899999999999999999999999999555444444444433

>KOG2113|consensus

Probab=91.25  E-value=0.21  Score=46.58  Aligned_cols=47  Identities=13%  Similarity=0.092  Sum_probs=39.8

Q ss_pred             cccccccccCCceEEeCCCCeecchhhHhcC--CCCCCCCcccccccce
Q psy7970         126 EECMVCSLKKASVLFKPCYHMVACESCASLM--KKCVQCRTQIDHMHPM  172 (290)
Q Consensus       126 ~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~~--~~Cp~Cr~~i~~~~~~  172 (290)
                      .+|.+|.......+..||||..+|.+||...  -.||.|..-+-..++|
T Consensus       344 ~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~i  392 (394)
T KOG2113|consen  344 LKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVPI  392 (394)
T ss_pred             cccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeeec
Confidence            3899999999999999999999999999743  5899998776666554

>KOG3039|consensus

Probab=90.86  E-value=0.17  Score=45.76  Aligned_cols=48  Identities=25%  Similarity=0.553  Sum_probs=40.2

Q ss_pred             cCCCcccccccccccc----cc-ccCCccchHHHhcC----CCCCCCcccccccccC
Q psy7970         242 KEQTMCPVCLDRLKNM----IF-LCGHGTCQMCGDRM----SECPICRKAVEKRILL  289 (290)
Q Consensus       242 ~e~~~C~IC~~~~~~~----v~-~CGH~fC~~C~~~~----~~CP~CR~~i~~~~~~  289 (290)
                      .....||||.+.+.|.    ++ +|||+||..|..++    ..+|+|-++...++.|
T Consensus       219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI  275 (303)
T KOG3039|consen  219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDII  275 (303)
T ss_pred             ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceE
Confidence            4679999999999997    33 39999999999987    3799999998776543

>KOG1814|consensus

Probab=90.86  E-value=0.15  Score=49.12  Aligned_cols=113  Identities=20%  Similarity=0.420  Sum_probs=66.8

Q ss_pred             ccccccccccC---CceEEeCCCCeecchhhHhc------------CCCCCCCCcccccccceeeecCCCCccccccCCC
Q psy7970         125 IEECMVCSLKK---ASVLFKPCYHMVACESCASL------------MKKCVQCRTQIDHMHPMVVCCGGPGIISEVQHTT  189 (290)
Q Consensus       125 i~~C~~C~~~~---~~~~~~PCgH~~~C~~Ca~~------------~~~Cp~Cr~~i~~~~~~~~~~~~~~~~~~~~~~~  189 (290)
                      .+.|.||.+..   ...+|+||+|. .|..|+..            .-+||.+.-.-....                   
T Consensus       184 lf~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~a~~-------------------  243 (445)
T KOG1814|consen  184 LFDCCICFEEQMGQHCFKFLPCSHV-FCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSVAPP-------------------  243 (445)
T ss_pred             cccceeeehhhcCcceeeecccchH-HHHHHHHHHHHHhhhcceeeeecCCCCCCcccCCc-------------------
Confidence            47999998754   56899999999 99999942            136766553211100                   


Q ss_pred             ChhhhhhhhccCCCCccchhhhccccccccccCCCCCChhHHHHHHHHHHhccCCCcccc--cccc-cccc----cc-c-
Q psy7970         190 DPAEEENAVALSPNTSAATLVEASTSGALMNNGSRDTSTSDIQKLQQQLQDIKEQTMCPV--CLDR-LKNM----IF-L-  260 (290)
Q Consensus       190 ~~~~e~n~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~l~e~~~C~I--C~~~-~~~~----v~-~-  260 (290)
                      ...+|.          +        +..+       ...-+-..+++.++.+.+-..||-  |... ..+|    ++ . 
T Consensus       244 g~vKel----------v--------g~EL-------~arYe~l~lqk~l~~msdv~yCPr~~Cq~p~~~d~~~~l~~Csk  298 (445)
T KOG1814|consen  244 GQVKEL----------V--------GDEL-------FARYEKLMLQKTLELMSDVVYCPRACCQLPVKQDPGRALAICSK  298 (445)
T ss_pred             hHHHHH----------H--------HHHH-------HHHHHHHHHHHHHHhhcccccCChhhccCccccCchhhhhhhcc
Confidence            001110          0        0000       011122347788888888899987  6554 3444    22 2 


Q ss_pred             cCCccchHHHhcCCCCCCCccc
Q psy7970         261 CGHGTCQMCGDRMSECPICRKA  282 (290)
Q Consensus       261 CGH~fC~~C~~~~~~CP~CR~~  282 (290)
                      |--.||..|..+|..=--|..+
T Consensus       299 CnFaFCtlCk~t~HG~s~Ck~~  320 (445)
T KOG1814|consen  299 CNFAFCTLCKLTWHGVSPCKVK  320 (445)
T ss_pred             CccHHHHHHHHhhcCCCcccCc
Confidence            7788999999887543334443

>PHA02741 hypothetical protein; Provisional

Probab=90.58  E-value=0.23  Score=41.89  Aligned_cols=27  Identities=30%  Similarity=0.550  Sum_probs=14.0

Q ss_pred             HHHHHHHh-CCCCCcccccCCCCCCCCC
Q psy7970          15 SIACFLAG-NGADLSIKNKKGQTPLDLC   41 (290)
Q Consensus        15 aiacfL~~-~Gadl~~~n~~g~tpldl~   41 (290)
                      .++-||+. .|+|++.+|..|.|||+++
T Consensus       112 ~iv~~Ll~~~g~~~~~~n~~g~tpL~~A  139 (169)
T PHA02741        112 DLAEWLCCQPGIDLHFCNADNKSPFELA  139 (169)
T ss_pred             HHHHHHHhCCCCCCCcCCCCCCCHHHHH
Confidence            34445554 3555555555555555555

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=89.94  E-value=0.11  Score=42.59  Aligned_cols=41  Identities=27%  Similarity=0.796  Sum_probs=36.1

Q ss_pred             Cccccccccccccccc-----cCCccchHHHhcCC-------CCCCCcccccc
Q psy7970         245 TMCPVCLDRLKNMIFL-----CGHGTCQMCGDRMS-------ECPICRKAVEK  285 (290)
Q Consensus       245 ~~C~IC~~~~~~~v~~-----CGH~fC~~C~~~~~-------~CP~CR~~i~~  285 (290)
                      ..|-||.|...+.-|+     ||...|-.|...+|       .||.|+.+|.+
T Consensus        81 YeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs  133 (140)
T PF05290_consen   81 YECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS  133 (140)
T ss_pred             eeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence            6899999999999663     99999999999876       69999998855

>PF04641 Rtf2: Rtf2 RING-finger

Probab=89.73  E-value=0.2  Score=45.82  Aligned_cols=48  Identities=19%  Similarity=0.530  Sum_probs=38.7

Q ss_pred             ccCCCcccccccccccc---cc--ccCCccchHHHhcCC---CCCCCccccccccc
Q psy7970         241 IKEQTMCPVCLDRLKNM---IF--LCGHGTCQMCGDRMS---ECPICRKAVEKRIL  288 (290)
Q Consensus       241 l~e~~~C~IC~~~~~~~---v~--~CGH~fC~~C~~~~~---~CP~CR~~i~~~~~  288 (290)
                      ....+.|||....+..-   |+  +|||+|+..++..+.   .||+|-++|...+.
T Consensus       110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k~~~~Cp~c~~~f~~~Di  165 (260)
T PF04641_consen  110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELKKSKKCPVCGKPFTEEDI  165 (260)
T ss_pred             CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhcccccccccCCccccCCE
Confidence            35679999999988542   33  499999999999876   79999999976543

>KOG2879|consensus

Probab=89.68  E-value=0.36  Score=44.35  Aligned_cols=52  Identities=25%  Similarity=0.565  Sum_probs=40.2

Q ss_pred             CCCCCCCCCCCCccccccccCcc-eEeecCCCcccccchhhhh------ccCCCCCCcch
Q psy7970          68 EGDGTEDMVTLDECRICSDLKRD-ILFQPCGHVACCSVCAPRV------KKCLICREPVE  120 (290)
Q Consensus        68 ~~~~~~~~~~~~~C~iC~~~~~~-~~~~PCgH~~~C~~Ca~~~------~~Cp~Cr~~i~  120 (290)
                      ++.+++..+...+|.+|-+.+.. .+..||||. .|..|...-      -.||.|.+++.
T Consensus       229 p~~sss~~t~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  229 PKFSSSTGTSDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             CCcccccccCCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCc
Confidence            44455667788899999988865 667789995 699998642      48999998775

>KOG3002|consensus

Probab=89.54  E-value=0.27  Score=46.03  Aligned_cols=49  Identities=29%  Similarity=0.620  Sum_probs=38.6

Q ss_pred             hhhccccccccccccCCceEEeC-CCCeecchhhH-hcCCCCCCCCcccccc
Q psy7970         120 EKRIKIEECMVCSLKKASVLFKP-CYHMVACESCA-SLMKKCVQCRTQIDHM  169 (290)
Q Consensus       120 ~~~~~i~~C~~C~~~~~~~~~~P-CgH~~~C~~Ca-~~~~~Cp~Cr~~i~~~  169 (290)
                      .....+.+|.+|.+.....+|.- =||+ +|..|. ....+||.||.+|.+.
T Consensus        43 ~~~~~lleCPvC~~~l~~Pi~QC~nGHl-aCssC~~~~~~~CP~Cr~~~g~~   93 (299)
T KOG3002|consen   43 LLDLDLLDCPVCFNPLSPPIFQCDNGHL-ACSSCRTKVSNKCPTCRLPIGNI   93 (299)
T ss_pred             ccchhhccCchhhccCcccceecCCCcE-ehhhhhhhhcccCCccccccccH
Confidence            34566778888888777777773 3899 999999 6678999999998753

>KOG4412|consensus

Probab=89.04  E-value=0.36  Score=42.18  Aligned_cols=41  Identities=34%  Similarity=0.394  Sum_probs=28.5

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhh
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCY   54 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~   54 (290)
                      ..||-||+.+||.++++|+-|+|||+=++.-.-.+.+.-+.
T Consensus       119 ~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li  159 (226)
T KOG4412|consen  119 LEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLI  159 (226)
T ss_pred             hhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHH
Confidence            36777888888888888888888887776555555544444

>KOG4159|consensus

Probab=88.86  E-value=0.2  Score=48.68  Aligned_cols=44  Identities=30%  Similarity=0.603  Sum_probs=37.4

Q ss_pred             cccccccccccCCceEEeCCCCeecchhhHh----cCCCCCCCCccccc
Q psy7970         124 KIEECMVCSLKKASVLFKPCYHMVACESCAS----LMKKCVQCRTQIDH  168 (290)
Q Consensus       124 ~i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~----~~~~Cp~Cr~~i~~  168 (290)
                      +-++|.+|+......+.+||||. +|..|..    .-..||.||..+.+
T Consensus        83 sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   83 SEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             chhhhhhhHhhcCCCcccccccc-ccHHHHHHHhccCCCCccccccccc
Confidence            35899999999999999999999 9999964    34799999987663

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=88.63  E-value=0.06  Score=37.19  Aligned_cols=36  Identities=25%  Similarity=0.385  Sum_probs=17.8

Q ss_pred             HHhCC-CCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970          20 LAGNG-ADLSIKNKKGQTPLDLCPDPNLCKALTKCYK   55 (290)
Q Consensus        20 L~~~G-adl~~~n~~g~tpldl~~d~~~~~~l~~~~~   55 (290)
                      |+++| +|++.+|..|.|||+++.-......+..+.+
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~   37 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQ   37 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHH
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHH
Confidence            67889 9999999999999999966666666666653

>KOG0508|consensus

Probab=88.48  E-value=0.29  Score=48.23  Aligned_cols=42  Identities=31%  Similarity=0.464  Sum_probs=26.7

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD   56 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~   56 (290)
                      -||-||.+.|||+|.+..+|.|.|+.+++....++++-+...
T Consensus       164 ~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~  205 (615)
T KOG0508|consen  164 DIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKH  205 (615)
T ss_pred             HHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhC
Confidence            466666666666666666666666666666666655555543

>KOG2231|consensus

Probab=88.41  E-value=0.22  Score=51.15  Aligned_cols=87  Identities=29%  Similarity=0.757  Sum_probs=58.9

Q ss_pred             ccccccccCcceEeecCCCcccccchhhhh----------ccCCCCCCcchhhcc---------c---cccccccccCCc
Q psy7970          80 ECRICSDLKRDILFQPCGHVACCSVCAPRV----------KKCLICREPVEKRIK---------I---EECMVCSLKKAS  137 (290)
Q Consensus        80 ~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~----------~~Cp~Cr~~i~~~~~---------i---~~C~~C~~~~~~  137 (290)
                      -|.||-...--...--|||.-+|..|+.++          ..||+||..+....-         +   ..|-.+.+....
T Consensus         2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~~s~~~~~~~~~t~~~~~~~~~~~~e~~~   81 (669)
T KOG2231|consen    2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVETKSNGDSSDAVGTFPEGRKCDFDEHEDTC   81 (669)
T ss_pred             CcceeecCccccccccccccccchhhhhhhhhhcccccccccCcccccceeeecccccccccccccccccccccccccee
Confidence            377787777767777899999999999876          356999986654221         0   133444444444


Q ss_pred             eEE----------eCCCCeecchhhHhcC------CCCCCCCccccc
Q psy7970         138 VLF----------KPCYHMVACESCASLM------KKCVQCRTQIDH  168 (290)
Q Consensus       138 ~~~----------~PCgH~~~C~~Ca~~~------~~Cp~Cr~~i~~  168 (290)
                      ++|          .+|-|. .|..|..+.      +.|++| ..+..
T Consensus        82 ~if~~d~~~y~~~~~~~~~-~C~~C~~~~~~~~~~~~~~~c-~~~~s  126 (669)
T KOG2231|consen   82 VIFFADKLTYTKLEACLHH-SCHICDRRFRALYNKKECLHC-TEFKS  126 (669)
T ss_pred             eeeeccccHHHHHHHHHhh-hcCccccchhhhcccCCCccc-cchhH
Confidence            444          688887 888888655      478888 44433

>KOG1002|consensus

Probab=88.23  E-value=0.16  Score=50.54  Aligned_cols=43  Identities=28%  Similarity=0.753  Sum_probs=35.8

Q ss_pred             cCCCccccccccccccccc-cCCccchHHHhcC---------CCCCCCccccc
Q psy7970         242 KEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRM---------SECPICRKAVE  284 (290)
Q Consensus       242 ~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~---------~~CP~CR~~i~  284 (290)
                      ++...|.+|.|.-.+++.. |.|.||+.|+...         .+||.|..+++
T Consensus       534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls  586 (791)
T KOG1002|consen  534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS  586 (791)
T ss_pred             cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence            4567999999999999665 9999999999653         37999987764

>PHA02798 ankyrin-like protein; Provisional

Probab=87.59  E-value=0.28  Score=48.51  Aligned_cols=41  Identities=20%  Similarity=0.143  Sum_probs=29.2

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYK   55 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~   55 (290)
                      .++-+|++.|||++++|..|+|||+++........+..+.+
T Consensus       272 ~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~  312 (489)
T PHA02798        272 KIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILN  312 (489)
T ss_pred             HHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHc
Confidence            56778888888888888888888888765555555555543

>KOG4628|consensus

Probab=86.87  E-value=0.85  Score=43.51  Aligned_cols=46  Identities=22%  Similarity=0.530  Sum_probs=32.7

Q ss_pred             CccccccccCcc---eEeecCCCcccccchhhh-----hccCCCCCCcchhhccc
Q psy7970          79 DECRICSDLKRD---ILFQPCGHVACCSVCAPR-----VKKCLICREPVEKRIKI  125 (290)
Q Consensus        79 ~~C~iC~~~~~~---~~~~PCgH~~~C~~Ca~~-----~~~Cp~Cr~~i~~~~~i  125 (290)
                      ..|.||+|.-..   +..+||.|..-+ .|-+.     -+.||+|++.|......
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~-~CIDpWL~~~r~~CPvCK~di~~~~~~  283 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHV-NCIDPWLTQTRTFCPVCKRDIRTDSGS  283 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhh-ccchhhHhhcCccCCCCCCcCCCCCCC
Confidence            589999987654   677999998642 23221     14599999988766654

>PHA02736 Viral ankyrin protein; Provisional

Probab=86.25  E-value=0.48  Score=39.03  Aligned_cols=40  Identities=25%  Similarity=0.210  Sum_probs=29.5

Q ss_pred             HHHHHHHhCCCCCccccc-CCCCCCCCCCCchhHHHHHhhh
Q psy7970          15 SIACFLAGNGADLSIKNK-KGQTPLDLCPDPNLCKALTKCY   54 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~-~g~tpldl~~d~~~~~~l~~~~   54 (290)
                      .++.||++.|||++.+|. .|.|||+++.-....+.+..+.
T Consensus        72 e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll  112 (154)
T PHA02736         72 EKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLC  112 (154)
T ss_pred             HHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHH
Confidence            567889999999999884 8999999885444444444444

>PHA02743 Viral ankyrin protein; Provisional

Probab=86.19  E-value=0.55  Score=39.60  Aligned_cols=35  Identities=20%  Similarity=0.304  Sum_probs=20.4

Q ss_pred             HHHHHhCCCCCcccc-cCCCCCCCCCCCchhHHHHH
Q psy7970          17 ACFLAGNGADLSIKN-KKGQTPLDLCPDPNLCKALT   51 (290)
Q Consensus        17 acfL~~~Gadl~~~n-~~g~tpldl~~d~~~~~~l~   51 (290)
                      +-||++.|||++.++ ..|+|||.++......+.+.
T Consensus        76 i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~  111 (166)
T PHA02743         76 IELLVNMGADINARELGTGNTLLHIAASTKNYELAE  111 (166)
T ss_pred             HHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHH
Confidence            566667777776666 36677776664333333333

>PHA02795 ankyrin-like protein; Provisional

Probab=86.09  E-value=0.35  Score=47.66  Aligned_cols=45  Identities=11%  Similarity=-0.018  Sum_probs=38.0

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhccc
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKE   58 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~~~   58 (290)
                      .-++-||++.|||++.+|..|+|||.++...+..+.+.-+.+...
T Consensus       201 ~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GA  245 (437)
T PHA02795        201 LEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGA  245 (437)
T ss_pred             HHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            478999999999999999999999999977777777777765543

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.85  E-value=0.31  Score=33.28  Aligned_cols=39  Identities=28%  Similarity=0.613  Sum_probs=20.0

Q ss_pred             CCccccccccccccccc--cCCccchHHHh--------cCCCCCCCccc
Q psy7970         244 QTMCPVCLDRLKNMIFL--CGHGTCQMCGD--------RMSECPICRKA  282 (290)
Q Consensus       244 ~~~C~IC~~~~~~~v~~--CGH~fC~~C~~--------~~~~CP~CR~~  282 (290)
                      .+.|||-...+..|+..  |.|.-|.+=..        ..|.||+|.++
T Consensus         2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~   50 (50)
T PF02891_consen    2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP   50 (50)
T ss_dssp             ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred             eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence            46899999999999884  99986643321        23789999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>KOG0505|consensus

Probab=85.73  E-value=0.76  Score=45.77  Aligned_cols=41  Identities=29%  Similarity=0.392  Sum_probs=33.9

Q ss_pred             HHHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhh
Q psy7970          13 SASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKC   53 (290)
Q Consensus        13 ~~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~   53 (290)
                      .++|++||++.||++.+.|..|-.|+|++.++.-...+...
T Consensus       118 ~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~  158 (527)
T KOG0505|consen  118 YLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETE  158 (527)
T ss_pred             cHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHH
Confidence            45999999999999999999999999999887655544433

>KOG1813|consensus

Probab=85.66  E-value=0.4  Score=44.47  Aligned_cols=45  Identities=27%  Similarity=0.500  Sum_probs=38.6

Q ss_pred             ccccccccccCCceEEeCCCCeecchhhHhc----CCCCCCCCccccccc
Q psy7970         125 IEECMVCSLKKASVLFKPCYHMVACESCASL----MKKCVQCRTQIDHMH  170 (290)
Q Consensus       125 i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~----~~~Cp~Cr~~i~~~~  170 (290)
                      +..|.+|.....+.|..-|||. +|..|+..    ..+|++|.+++....
T Consensus       241 Pf~c~icr~~f~~pVvt~c~h~-fc~~ca~~~~qk~~~c~vC~~~t~g~~  289 (313)
T KOG1813|consen  241 PFKCFICRKYFYRPVVTKCGHY-FCEVCALKPYQKGEKCYVCSQQTHGSF  289 (313)
T ss_pred             CccccccccccccchhhcCCce-eehhhhccccccCCcceeccccccccc
Confidence            3689999999999999999999 99999954    368999999876654

>PHA02736 Viral ankyrin protein; Provisional

Probab=85.56  E-value=0.34  Score=39.94  Aligned_cols=40  Identities=20%  Similarity=0.254  Sum_probs=28.7

Q ss_pred             HHHHHHHh-CCCCCcccccCCCCCCCCCCCchhHHHHHhhh
Q psy7970          15 SIACFLAG-NGADLSIKNKKGQTPLDLCPDPNLCKALTKCY   54 (290)
Q Consensus        15 aiacfL~~-~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~   54 (290)
                      .++-||+. .|+|++.+|..|+|||.++......+.+..+.
T Consensus       106 ~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll  146 (154)
T PHA02736        106 ELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILR  146 (154)
T ss_pred             HHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            55677876 48898888888999988886655555444444

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=85.55  E-value=0.51  Score=34.02  Aligned_cols=41  Identities=24%  Similarity=0.576  Sum_probs=21.0

Q ss_pred             ccccccccccCCceE-EeCCCCeecchhhHhcC--CCCCCCCccc
Q psy7970         125 IEECMVCSLKKASVL-FKPCYHMVACESCASLM--KKCVQCRTQI  166 (290)
Q Consensus       125 i~~C~~C~~~~~~~~-~~PCgH~~~C~~Ca~~~--~~Cp~Cr~~i  166 (290)
                      .-.|.+|.+.....+ +.-|.|. +|..|+...  ..||.|+.+-
T Consensus         7 lLrCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~~~~CPvC~~Pa   50 (65)
T PF14835_consen    7 LLRCSICFDILKEPVCLGGCEHI-FCSSCIRDCIGSECPVCHTPA   50 (65)
T ss_dssp             TTS-SSS-S--SS-B---SSS---B-TTTGGGGTTTB-SSS--B-
T ss_pred             hcCCcHHHHHhcCCceeccCccH-HHHHHhHHhcCCCCCCcCChH
Confidence            346777877666664 5679999 999999754  6899999873

>PHA03095 ankyrin-like protein; Provisional

Probab=85.36  E-value=0.43  Score=46.43  Aligned_cols=40  Identities=28%  Similarity=0.281  Sum_probs=22.5

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhh
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCY   54 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~   54 (290)
                      .++-+|+..|+|++.+|..|+|||+++....-.+.+..+.
T Consensus       238 ~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL  277 (471)
T PHA03095        238 SLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLI  277 (471)
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            3555666666666666666666666664443333333333

>PHA02791 ankyrin-like protein; Provisional

Probab=84.93  E-value=0.46  Score=44.10  Aligned_cols=42  Identities=26%  Similarity=0.206  Sum_probs=32.1

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD   56 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~   56 (290)
                      .++-+|++.|||++.+|..|+|||+++......+.+..+.+.
T Consensus        75 eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~  116 (284)
T PHA02791         75 KIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK  116 (284)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            567788888888888888888888888777666666666543

>KOG1039|consensus

Probab=84.81  E-value=0.47  Score=45.25  Aligned_cols=47  Identities=28%  Similarity=0.596  Sum_probs=39.1

Q ss_pred             ccccccccccCCceE-----E---eCCCCeecchhhHhc-----------CCCCCCCCcccccccce
Q psy7970         125 IEECMVCSLKKASVL-----F---KPCYHMVACESCASL-----------MKKCVQCRTQIDHMHPM  172 (290)
Q Consensus       125 i~~C~~C~~~~~~~~-----~---~PCgH~~~C~~Ca~~-----------~~~Cp~Cr~~i~~~~~~  172 (290)
                      -..|.||++......     |   .+|.|. .|..|...           .+.||+||++...+.+-
T Consensus       161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS  226 (344)
T KOG1039|consen  161 EKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPS  226 (344)
T ss_pred             cccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCcccccccc
Confidence            469999999988887     6   679999 99999942           47999999998777653

>KOG2932|consensus

Probab=84.65  E-value=0.45  Score=44.42  Aligned_cols=54  Identities=24%  Similarity=0.592  Sum_probs=39.0

Q ss_pred             ccccccccccCCce-EEeCCCCeecchhhHhc--CCCCCCCCccccccc-----ceeeecCCC
Q psy7970         125 IEECMVCSLKKASV-LFKPCYHMVACESCASL--MKKCVQCRTQIDHMH-----PMVVCCGGP  179 (290)
Q Consensus       125 i~~C~~C~~~~~~~-~~~PCgH~~~C~~Ca~~--~~~Cp~Cr~~i~~~~-----~~~~~~~~~  179 (290)
                      +-.|..|.-.+... .++||.|+ +|.+||..  .|.||.|...|.++.     .+|+|.+..
T Consensus        90 VHfCd~Cd~PI~IYGRmIPCkHv-FCl~CAr~~~dK~Cp~C~d~VqrIeq~~~g~iFmC~~~~  151 (389)
T KOG2932|consen   90 VHFCDRCDFPIAIYGRMIPCKHV-FCLECARSDSDKICPLCDDRVQRIEQIMMGGIFMCAAPH  151 (389)
T ss_pred             eEeecccCCcceeeecccccchh-hhhhhhhcCccccCcCcccHHHHHHHhcccceEEeecch
Confidence            45677775543322 56899999 99999964  679999998887754     357777554

>PHA02730 ankyrin-like protein; Provisional

Probab=84.48  E-value=0.56  Score=48.60  Aligned_cols=32  Identities=16%  Similarity=0.301  Sum_probs=28.2

Q ss_pred             cchhHHHHHHHHHhCCCCCcccccCCCCCCCC
Q psy7970           9 DKKSSASIACFLAGNGADLSIKNKKGQTPLDL   40 (290)
Q Consensus         9 ~~~~~~aiacfL~~~Gadl~~~n~~g~tpldl   40 (290)
                      +.+.+.-||-||+++|||++.+|..|.|||++
T Consensus       210 ~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~  241 (672)
T PHA02730        210 SESLSKDVIKCLIDNNVSIHGRDEGGSLPIQY  241 (672)
T ss_pred             hhccCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            44456689999999999999999999999984

>KOG1001|consensus

Probab=84.38  E-value=0.31  Score=50.52  Aligned_cols=41  Identities=32%  Similarity=0.951  Sum_probs=33.5

Q ss_pred             Cccccccccccccccc-cCCccchHHHhcCC------CCCCCccccccc
Q psy7970         245 TMCPVCLDRLKNMIFL-CGHGTCQMCGDRMS------ECPICRKAVEKR  286 (290)
Q Consensus       245 ~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~~------~CP~CR~~i~~~  286 (290)
                      ..|+||++ ...+++. |||.||..|+...+      .||.||..+...
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~  502 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEK  502 (674)
T ss_pred             cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence            99999999 5556554 99999999999763      599999877543

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=84.23  E-value=0.62  Score=44.61  Aligned_cols=39  Identities=23%  Similarity=0.572  Sum_probs=29.7

Q ss_pred             cccccccc-------------CCceEEeCCCCeecchhhHh----cCCCCCCCCccc
Q psy7970         127 ECMVCSLK-------------KASVLFKPCYHMVACESCAS----LMKKCVQCRTQI  166 (290)
Q Consensus       127 ~C~~C~~~-------------~~~~~~~PCgH~~~C~~Ca~----~~~~Cp~Cr~~i  166 (290)
                      -|.+|+|.             ..+..-+||||. .=-.|..    |.+.||+||.++
T Consensus       289 ~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi-lHl~CLknW~ERqQTCPICr~p~  344 (491)
T COG5243         289 TCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI-LHLHCLKNWLERQQTCPICRRPV  344 (491)
T ss_pred             eEEEecccccCCCCccCcccccCCcccccccce-eeHHHHHHHHHhccCCCcccCcc
Confidence            68888775             123467899998 5578884    679999999984

>PHA02730 ankyrin-like protein; Provisional

Probab=83.83  E-value=0.5  Score=48.92  Aligned_cols=42  Identities=14%  Similarity=0.101  Sum_probs=33.3

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD   56 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~   56 (290)
                      .++=||+++|||++++|..|+|||.++..-.-.+.+.-+...
T Consensus       443 ~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~  484 (672)
T PHA02730        443 DVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEY  484 (672)
T ss_pred             HHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHC
Confidence            468999999999999999999999999665555555444433

>KOG0802|consensus

Probab=83.37  E-value=0.48  Score=47.92  Aligned_cols=40  Identities=33%  Similarity=0.603  Sum_probs=33.6

Q ss_pred             ccccccccccCCc-----eEEeCCCCeecchhhHh----cCCCCCCCCcc
Q psy7970         125 IEECMVCSLKKAS-----VLFKPCYHMVACESCAS----LMKKCVQCRTQ  165 (290)
Q Consensus       125 i~~C~~C~~~~~~-----~~~~PCgH~~~C~~Ca~----~~~~Cp~Cr~~  165 (290)
                      ...|.||.+....     +..+||||. ++..|..    +...||.||..
T Consensus       291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~er~qtCP~CR~~  339 (543)
T KOG0802|consen  291 DELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFERQQTCPTCRTV  339 (543)
T ss_pred             CCeeeeechhhccccccccceeecccc-hHHHHHHHHHHHhCcCCcchhh
Confidence            3578888887666     799999999 9999995    56899999984

>PHA02743 Viral ankyrin protein; Provisional

Probab=83.00  E-value=0.57  Score=39.48  Aligned_cols=27  Identities=22%  Similarity=0.418  Sum_probs=16.1

Q ss_pred             HHHHHHhCCCCCcccccCCCCCCCCCC
Q psy7970          16 IACFLAGNGADLSIKNKKGQTPLDLCP   42 (290)
Q Consensus        16 iacfL~~~Gadl~~~n~~g~tpldl~~   42 (290)
                      ++-||.+.|++++.+|..|+|||+++.
T Consensus        39 ~~~~l~~~g~~~~~~d~~g~t~Lh~Aa   65 (166)
T PHA02743         39 VAPFISGDGHLLHRYDHHGRQCTHMVA   65 (166)
T ss_pred             HHHHHhhcchhhhccCCCCCcHHHHHH
Confidence            444556666666666666666666653

>PHA02989 ankyrin repeat protein; Provisional

Probab=82.88  E-value=0.61  Score=46.21  Aligned_cols=27  Identities=26%  Similarity=0.261  Sum_probs=14.3

Q ss_pred             HHHHHHhCCCCCcccccCCCCCCCCCC
Q psy7970          16 IACFLAGNGADLSIKNKKGQTPLDLCP   42 (290)
Q Consensus        16 iacfL~~~Gadl~~~n~~g~tpldl~~   42 (290)
                      ++-+|++.|||++.+|..|.|||+++.
T Consensus       271 ~v~~LL~~Gadin~~d~~G~TpL~~A~  297 (494)
T PHA02989        271 AFNYLLKLGDDIYNVSKDGDTVLTYAI  297 (494)
T ss_pred             HHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            444555555555555555555555553

>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ]

Probab=82.58  E-value=0.4  Score=46.20  Aligned_cols=82  Identities=24%  Similarity=0.420  Sum_probs=0.0

Q ss_pred             cCcceEeecCCCcccccchh------hhhccCCCCCCcchhhcccc--ccccccc-cCCceEEeCCCCeecchhhHh---
Q psy7970          87 LKRDILFQPCGHVACCSVCA------PRVKKCLICREPVEKRIKIE--ECMVCSL-KKASVLFKPCYHMVACESCAS---  154 (290)
Q Consensus        87 ~~~~~~~~PCgH~~~C~~Ca------~~~~~Cp~Cr~~i~~~~~i~--~C~~C~~-~~~~~~~~PCgH~~~C~~Ca~---  154 (290)
                      .+.--+++-|||+---..=.      ...+.||+||+.=.-+.-..  +=....| .+.+.+|.||||++. +.-+.   
T Consensus       300 ~~qP~VYl~CGHVhG~h~Wg~~~~~~~~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~S-ekTa~yWs  378 (416)
T PF04710_consen  300 ERQPWVYLNCGHVHGYHNWGQDSDRDPRSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCS-EKTAKYWS  378 (416)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCceeeccccceeeecccccccccccccccCCCccccCCceeEeeccccceeecCCCCceeecccccccc-hhhhhhhh
Confidence            34557888999976322211      12579999998654311110  1111233 456779999999943 54442   


Q ss_pred             --cC--------CCCCCCCcccccc
Q psy7970         155 --LM--------KKCVQCRTQIDHM  169 (290)
Q Consensus       155 --~~--------~~Cp~Cr~~i~~~  169 (290)
                        .+        -.||+|-.+++..
T Consensus       379 ~i~lPhGt~~f~a~CPFCa~~L~g~  403 (416)
T PF04710_consen  379 QIPLPHGTHAFHAACPFCATPLDGE  403 (416)
T ss_dssp             -------------------------
T ss_pred             cCCCCCCcccccccCCcccCcccCC
Confidence              11        3899999998754

; PDB: 3EGB_B 3EGA_A.

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=82.29  E-value=0.46  Score=36.73  Aligned_cols=32  Identities=41%  Similarity=0.678  Sum_probs=26.3

Q ss_pred             hccCCCccccccccccccc---cccCCccchHHHh
Q psy7970         240 DIKEQTMCPVCLDRLKNMI---FLCGHGTCQMCGD  271 (290)
Q Consensus       240 ~l~e~~~C~IC~~~~~~~v---~~CGH~fC~~C~~  271 (290)
                      .+.+...|+||...+.+.+   ++|||.|-..|+.
T Consensus        74 ~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   74 VITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             EECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence            5577789999999998874   4699999888875

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>PHA03100 ankyrin repeat protein; Provisional

Probab=82.16  E-value=0.76  Score=44.86  Aligned_cols=41  Identities=22%  Similarity=0.254  Sum_probs=23.0

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhh
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCY   54 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~   54 (290)
                      ..++-+|++.|||++.+|..|.|||+++......+.+.-+.
T Consensus       230 ~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll  270 (480)
T PHA03100        230 LEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLL  270 (480)
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            45566666666666666666666666664433333333333

>KOG0195|consensus

Probab=81.80  E-value=1.2  Score=41.63  Aligned_cols=40  Identities=43%  Similarity=0.468  Sum_probs=32.7

Q ss_pred             HHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970          16 IACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD   56 (290)
Q Consensus        16 iacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~   56 (290)
                      ||==|+++||-+++-|++|.||||-+. |.+.+.|....++
T Consensus       115 iaedli~~ga~v~icnk~g~tpldkak-p~l~~~l~e~aek  154 (448)
T KOG0195|consen  115 IAEDLISCGAAVNICNKKGMTPLDKAK-PMLKNTLLEIAEK  154 (448)
T ss_pred             HHHHHHhccceeeecccCCCCchhhhc-hHHHHHHHHHHHH
Confidence            444589999999999999999999764 6778887777665

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=81.79  E-value=1.5  Score=26.48  Aligned_cols=20  Identities=25%  Similarity=0.486  Sum_probs=17.3

Q ss_pred             HHHHHHHHHhCCCCCccccc
Q psy7970          13 SASIACFLAGNGADLSIKNK   32 (290)
Q Consensus        13 ~~aiacfL~~~Gadl~~~n~   32 (290)
                      ...++-+|+++|||++++|.
T Consensus        14 ~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen   14 HPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             CHHHHHHHHHTTSCTTCBCT
T ss_pred             HHHHHHHHHHCcCCCCCCCC
Confidence            45789999999999998874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=81.77  E-value=1  Score=41.98  Aligned_cols=40  Identities=33%  Similarity=0.679  Sum_probs=31.8

Q ss_pred             ccccccccc---CCceEEeCCCCeecchhhHhcC-----CCCCCCCccc
Q psy7970         126 EECMVCSLK---KASVLFKPCYHMVACESCASLM-----KKCVQCRTQI  166 (290)
Q Consensus       126 ~~C~~C~~~---~~~~~~~PCgH~~~C~~Ca~~~-----~~Cp~Cr~~i  166 (290)
                      .+|.+|+..   ...+..+||.|. +=..|..+.     .+||.||.+|
T Consensus       324 veCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~i  371 (374)
T COG5540         324 VECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAI  371 (374)
T ss_pred             ceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCC
Confidence            599999874   334688999999 668888653     5999999875

>PHA02741 hypothetical protein; Provisional

Probab=81.23  E-value=0.83  Score=38.46  Aligned_cols=41  Identities=24%  Similarity=0.223  Sum_probs=31.9

Q ss_pred             HHHHHHHHhCCCCCccccc-CCCCCCCCCCCchhHHHHHhhh
Q psy7970          14 ASIACFLAGNGADLSIKNK-KGQTPLDLCPDPNLCKALTKCY   54 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~-~g~tpldl~~d~~~~~~l~~~~   54 (290)
                      .-++-+|++.|||++.+|. .|.|||+++...+..+.+..+.
T Consensus        77 ~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll  118 (169)
T PHA02741         77 AEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLC  118 (169)
T ss_pred             HHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHH
Confidence            3567789999999999986 8999999986666555555554

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=81.20  E-value=2  Score=31.38  Aligned_cols=44  Identities=11%  Similarity=-0.046  Sum_probs=32.3

Q ss_pred             ccccccccccCCceEEeCCCCeecchhhHhc-----CCCCCCCCcccccc
Q psy7970         125 IEECMVCSLKKASVLFKPCYHMVACESCASL-----MKKCVQCRTQIDHM  169 (290)
Q Consensus       125 i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~-----~~~Cp~Cr~~i~~~  169 (290)
                      .+.|.++.+-..+.+++|+||. +...+..+     ...||.+++++...
T Consensus         4 ~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~~   52 (73)
T PF04564_consen    4 EFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSES   52 (73)
T ss_dssp             GGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred             ccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence            4679999999999999999977 99999853     46799999887653

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>PHA02859 ankyrin repeat protein; Provisional

Probab=80.84  E-value=0.67  Score=40.67  Aligned_cols=28  Identities=18%  Similarity=0.401  Sum_probs=25.0

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCC
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLC   41 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~   41 (290)
                      ..|+-+|+.+|||++.+|..|+|||+++
T Consensus       103 ~eiv~~Ll~~gadin~~d~~G~TpLh~a  130 (209)
T PHA02859        103 PEILKILIDSGSSITEEDEDGKNLLHMY  130 (209)
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            4677889999999999999999999986

>PHA02946 ankyin-like protein; Provisional

Probab=80.50  E-value=0.84  Score=44.94  Aligned_cols=40  Identities=15%  Similarity=0.164  Sum_probs=25.3

Q ss_pred             HHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970          16 IACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYK   55 (290)
Q Consensus        16 iacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~   55 (290)
                      ++-+|+++|||++.+|..|.|||.++......+.+.-+.+
T Consensus        54 iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~   93 (446)
T PHA02946         54 FVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLT   93 (446)
T ss_pred             HHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            5666777777777777777777777755544444444443

>PF04641 Rtf2: Rtf2 RING-finger

Probab=80.37  E-value=1.6  Score=39.87  Aligned_cols=31  Identities=26%  Similarity=0.517  Sum_probs=26.5

Q ss_pred             ceEEeCCCCeecchhhHhcCC---CCCCCCccccc
Q psy7970         137 SVLFKPCYHMVACESCASLMK---KCVQCRTQIDH  168 (290)
Q Consensus       137 ~~~~~PCgH~~~C~~Ca~~~~---~Cp~Cr~~i~~  168 (290)
                      -+.+.||||+ +++.+...++   .||.|..+...
T Consensus       129 fv~l~~cG~V-~s~~alke~k~~~~Cp~c~~~f~~  162 (260)
T PF04641_consen  129 FVYLRPCGCV-FSEKALKELKKSKKCPVCGKPFTE  162 (260)
T ss_pred             EEEEcCCCCE-eeHHHHHhhcccccccccCCcccc
Confidence            4677799999 8899998877   89999999774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	290
3t6p_A	345	Iap Antagonist-Induced Conformational Change In Cia		4e-05
3eb5_A	74	Structure Of The Ciap2 Ring Domain Length = 74		5e-05
3eb5_A	74	Structure Of The Ciap2 Ring Domain Length = 74		3e-04
4auq_B	62	Structure Of Birc7-Ubch5b-Ub Complex. Length = 62		1e-04
4auq_B	62	Structure Of Birc7-Ubch5b-Ub Complex. Length = 62		2e-04
2yhn_A	79	The Idol-Ube2d Complex Mediates Sterol-Dependent De		7e-04

>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1 Promotes E3 Ligase Activation Via Dimerization Length = 345

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 81  CRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICR 116
           C++C D +  ++F PCGH+  C  CAP ++KC ICR
Sbjct: 298 CKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICR 333

>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain Length = 74

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 81  CRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIK 124
           C++C D +  I+F PCGH+  C  CAP ++KC ICR  ++  ++
Sbjct: 27  CKVCMDKEVSIVFIPCGHLVVCKDCAPSLRKCPICRSTIKGTVR 70

>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain Length = 74

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 36/53 (67%), Gaps = 4/53 (7%)
Query: 118 PVEKRIK-IEE---CMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQI 166
           PVE++++ ++E   C VC  K+ S++F PC H+V C+ CA  ++KC  CR+ I
Sbjct: 13  PVEEQLRRLQEERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSLRKCPICRSTI 65

>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex. Length = 62

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 81  CRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIK 124
           C++C D    I+F PCGH+  C+ CAP ++ C ICR PV  R++
Sbjct: 16  CKVCLDRAVSIVFVPCGHLV-CAECAPGLQLCPICRAPVRSRVR 58

>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex. Length = 62

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 243 EQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRMSECPICRKAVEKRILLY 290
           E+  C VCLDR  +++F+ CGH  C  C   +  CPICR  V  R+  +
Sbjct: 12  EERTCKVCLDRAVSIVFVPCGHLVCAECAPGLQLCPICRAPVRSRVRTF 60

>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 79

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 3/53 (5%)
Query: 120 EKRIKIEE---CMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHM 169
           EK  K++E   CMVC  ++ +  F PC H V CESCA+ ++ C  CR++++H+
Sbjct: 10  EKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHV 62

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	290
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	2e-13
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	2e-12
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	1e-06
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	3e-13
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	3e-12
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	8e-08
2ea5_A	68	Cell growth regulator with ring finger domain prot	5e-12
2ea5_A	68	Cell growth regulator with ring finger domain prot	4e-08
2ea5_A	68	Cell growth regulator with ring finger domain prot	1e-07
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	9e-12
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	3e-09
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	2e-08
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	3e-08
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	4e-04
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	6e-08
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	3e-05
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	2e-06
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	8e-05
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	3e-06
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	3e-05
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	3e-05
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	3e-05
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	6e-05
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	1e-04
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	1e-04
1z6u_A	150	NP95-like ring finger protein isoform B; structura	1e-04
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	1e-04
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	1e-04
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	2e-04
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	3e-04
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	3e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-04
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	8e-04

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79

 Score = 63.2 bits (154), Expect = 2e-13
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 231 IQKLQQQLQDIKEQTMCPVCLDRLKNMIFL-CGHG-TCQMCGDRMSECPICRKAVEKRIL 288
            + LQ++L+ +KE  +C VC +   N  F  CGH   C+ C  ++  CP+CR  VE    
Sbjct: 5   TRVLQEKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQH 64

Query: 289 LY 290
           +Y
Sbjct: 65  VY 66

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79

 Score = 60.9 bits (148), Expect = 2e-12
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 81  CRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKI 125
           C +C + + +  F PCGH  CC  CA +++ C +CR  VE    +
Sbjct: 21  CMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHV 65

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79

 Score = 44.8 bits (106), Expect = 1e-06
 Identities = 20/54 (37%), Positives = 34/54 (62%)

Query: 116 REPVEKRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHM 169
           +E + K  +   CMVC  ++ +  F PC H V CESCA+ ++ C  CR++++H+
Sbjct: 9   QEKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHV 62

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 62.9 bits (153), Expect = 3e-13
 Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 223 SRDTSTSDIQKLQQQLQDIKEQTMCPVCLDRLKNMIFL-CGH-GTCQMCGDRMSECPICR 280
               S       ++QL+ ++E+ +C +C+DR   ++F+ CGH  TC+ C + + +CP+C 
Sbjct: 4   GSSGSLQKEISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCY 63

Query: 281 KAVEKRILLY 290
             +  +  ++
Sbjct: 64  TVITFKQKIF 73

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 59.8 bits (145), Expect = 3e-12
 Identities = 19/53 (35%), Positives = 26/53 (49%)

Query: 73  EDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKI 125
             +     C+IC D    I+F PCGH+  C  CA  V KC +C   +  + KI
Sbjct: 20  RRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKI 72

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 47.8 bits (114), Expect = 8e-08
 Identities = 17/67 (25%), Positives = 34/67 (50%)

Query: 106 APRVKKCLICREPVEKRIKIEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQ 165
           +  ++K +   E + +  + + C +C  +  +++F PC H+V C+ CA  + KC  C T 
Sbjct: 6   SGSLQKEISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTV 65

Query: 166 IDHMHPM 172
           I     +
Sbjct: 66  ITFKQKI 72

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 59.4 bits (144), Expect = 5e-12
 Identities = 11/47 (23%), Positives = 23/47 (48%)

Query: 79  DECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKI 125
            +C +C +   + +  PC H   C  C    ++C +CR+ V++   +
Sbjct: 16  KDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFAL 62

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 48.3 bits (115), Expect = 4e-08
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 239 QDIKEQTMCPVCLDRLKNMIFL-CGH-GTCQMCGDRMSECPICRKAVEKRILLY 290
              +    C VC +   N + L C H   C  C     +CP+CR+ V++   L 
Sbjct: 10  PSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALS 63

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 46.7 bits (111), Expect = 1e-07
 Identities = 12/53 (22%), Positives = 22/53 (41%)

Query: 126 EECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVVCCGG 178
           ++C+VC     + +  PC H   C+ C    ++C  CR  +     +     G
Sbjct: 16  KDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSGPSSG 68

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A Length = 345

 Score = 63.8 bits (153), Expect = 9e-12
 Identities = 17/56 (30%), Positives = 31/56 (55%)

Query: 70  DGTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKI 125
           +    +     C++C D +  ++F PCGH+  C  CAP ++KC ICR  ++  ++ 
Sbjct: 287 EQLRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRT 342

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A Length = 345

 Score = 56.1 bits (133), Expect = 3e-09
 Identities = 30/200 (15%), Positives = 66/200 (33%), Gaps = 9/200 (4%)

Query: 93  FQPCGHVACCSVCAPRVKKCLICREPVEKRIKIEECMVCSLKKASVLFKPCYHMVACESC 152
           ++    +    + A   K+     +  E+    +  ++   + A      C   +     
Sbjct: 151 YKTVNDIVSALLNAEDEKREEEKEKQAEEMASDDLSLIRKNRMALFQQLTCVLPILDNLL 210

Query: 153 ASLMKKCVQCRTQIDHMHPMVVCCGGPGIISEVQHTTDPAEEENAVALSPNTSAATLVEA 212
            + +    +           +          E+  T        A     +         
Sbjct: 211 KANVINKQEHDIIKQKTQIPLQA-------RELIDTILVKGNAAANIFKNSLKEIDSTLY 263

Query: 213 STSGALMNNGSRDTSTSDIQKLQQQLQDIKEQTMCPVCLDRLKNMIFL-CGH-GTCQMCG 270
                  N     T       L++QL+ ++E+  C VC+D+  +++F+ CGH   CQ C 
Sbjct: 264 KNLFVDKNMKYIPTEDVSGLSLEEQLRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECA 323

Query: 271 DRMSECPICRKAVEKRILLY 290
             + +CPICR  ++  +  +
Sbjct: 324 PSLRKCPICRGIIKGTVRTF 343

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A Length = 345

 Score = 53.4 bits (126), Expect = 2e-08
 Identities = 22/98 (22%), Positives = 36/98 (36%)

Query: 72  TEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKIEECMVC 131
            +     +  +         L++                  L   E + +  +   C VC
Sbjct: 242 VKGNAAANIFKNSLKEIDSTLYKNLFVDKNMKYIPTEDVSGLSLEEQLRRLQEERTCKVC 301

Query: 132 SLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHM 169
             K+ SV+F PC H+V C+ CA  ++KC  CR  I   
Sbjct: 302 MDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGT 339

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 48.7 bits (116), Expect = 3e-08
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)

Query: 77  TLDECRICSDLKRD--ILFQPCGHVACCSVCAPRVKK----CLICREPVEKRIKI 125
            L  C +C    RD  I+    GH+  C  CA R+KK    C IC++ ++  IK+
Sbjct: 6   LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKV 60

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 37.1 bits (86), Expect = 4e-04
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 8/53 (15%)

Query: 246 MCPVCLDRLKNMIFL---CGHG-TCQMCGDRM----SECPICRKAVEKRILLY 290
            C +C  R ++   +    GH  TC  C  R+    + CPIC+K ++  I ++
Sbjct: 9   PCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVF 61

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64

 Score = 47.9 bits (114), Expect = 6e-08
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 72  TEDMVTLDECRICSDLKRD--ILFQPCGHVACCSVCAPRVKK----CLICREPVEKRIKI 125
           +  +  ++ C IC    ++  I+    GH+  C  CA ++KK    C +CR+P++  +  
Sbjct: 2   SLPLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLT 61

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 8/60 (13%)

Query: 239 QDIKEQTMCPVCLDRLKNMIFL---CGHG-TCQMCGDRM----SECPICRKAVEKRILLY 290
             +     C +C  R KN   +    GH   C  C  ++      CP+CR+ ++  +L Y
Sbjct: 3   LPLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 47.5 bits (112), Expect = 2e-06
 Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 6/61 (9%)

Query: 232 QKLQQQLQDIKEQTMCPVCLDRLKNMIFL-CGHGTCQMC-----GDRMSECPICRKAVEK 285
           ++ +   +      +C +C +  K++    CGH  C  C           CP CR  ++ 
Sbjct: 320 EQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379

Query: 286 R 286
            
Sbjct: 380 T 380

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 42.8 bits (100), Expect = 8e-05
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 73  EDMVTLDECRICSDLKRDILFQPCGHVACCS----VCAPRVKKCLICREPVEKRIKI 125
           E   T   C+IC++  +D+  +PCGH+ C S          + C  CR  ++    I
Sbjct: 327 EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 383

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 8/72 (11%)

Query: 225 DTSTSDIQKLQQQLQDIKEQTMCPVCLDRLKN-MIFLCGHGTCQMC-------GDRMSEC 276
           D S   ++++Q  +  +++   CP+CL+ +K  +   C H  C+ C           S+C
Sbjct: 2   DLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQC 61

Query: 277 PICRKAVEKRIL 288
           P+C+  + KR L
Sbjct: 62  PLCKNDITKRSL 73

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 6/66 (9%)

Query: 229 SDIQKLQQQLQDIKEQTMCPVCLDRLKN--MIFLCGHGTCQMC----GDRMSECPICRKA 282
           S        ++ I +   C +C +      +I  C H  C +C        ++CP C   
Sbjct: 7   SRWPPGLAVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVT 66

Query: 283 VEKRIL 288
           V +  L
Sbjct: 67  VTEPDL 72

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 41.4 bits (97), Expect = 3e-05
 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 7/63 (11%)

Query: 235 QQQLQDIKEQTMCPVCLDRLKN--MIFLCGHGTCQMC-----GDRMSECPICRKAVEKRI 287
           +Q ++ I E   C +C+++L++  +   C    C  C      ++ ++CP CR  ++ R 
Sbjct: 13  EQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72

Query: 288 LLY 290
           L+ 
Sbjct: 73  LVN 75

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 42.3 bits (99), Expect = 3e-05
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 226 TSTSDIQKLQQQLQDIKEQTMCPVCLDRLKN--MIFLCGHGTCQMC-----GDRMSECPI 278
            + +D  ++    + +  + MCP+CLD LKN      C H  C  C          ECP 
Sbjct: 36  EAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPT 95

Query: 279 CRKAVEKRILL 289
           CRK +  +  L
Sbjct: 96  CRKKLVSKRSL 106

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 41.6 bits (97), Expect = 6e-05
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 5/68 (7%)

Query: 224 RDTSTSDIQKLQQQLQDIKEQTMCPVCLDRLKNMIFL-CGHGTCQMC----GDRMSECPI 278
                   + L      ++ +  C +C +     + L C H  C  C      R  ECPI
Sbjct: 44  EKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPI 103

Query: 279 CRKAVEKR 286
           CRK ++ +
Sbjct: 104 CRKDIKSK 111

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 11/60 (18%)

Query: 238 LQDIKEQTMCPVCLDRLKN-MIFLCGHGTCQMC----------GDRMSECPICRKAVEKR 286
           L ++KE+  CP+CL+ L   +   CGH  CQ C              S CP+CR + +  
Sbjct: 13  LVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 4/66 (6%)

Query: 225 DTSTSDIQKLQQQLQDIKEQTMCPVCLDRLKN--MIFLCGHGTCQMCGDRM--SECPICR 280
                     +  L  +++   C  C + L+    +  C H  C  C      + CP+C 
Sbjct: 3   PDGRGAWAHSRAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCY 62

Query: 281 KAVEKR 286
                +
Sbjct: 63  TPAWIQ 68

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 12/110 (10%)

Query: 183 SEVQHTTDPAEEENAVALSPNTSAATLVEASTSGALMNNGSRDTSTSDIQKLQQQLQDIK 242
           S+V   +D AE   A  L+P        +        N    D   S + +    L+ ++
Sbjct: 23  SKVYKASDSAEAIEAFQLTPQ------QQHLIREDCQNQKLWDEVLSHLVEGPNFLKKLE 76

Query: 243 EQTMCPVCLDRLKNMIFL-CGHGTCQMC-----GDRMSECPICRKAVEKR 286
           +  MC  C + +   +   C H  C+ C       ++  CP CR  + + 
Sbjct: 77  QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 6/70 (8%)

Query: 223 SRDTSTSDIQKLQQQLQDIKEQTMCPVCLDRLKNMIFL-CGHGTCQMC-----GDRMSEC 276
           S     +     Q  L  ++E   C  C + +   I   C H  C+ C       ++  C
Sbjct: 31  SLKDRPASGSPFQLFLSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSC 90

Query: 277 PICRKAVEKR 286
           P CR  + + 
Sbjct: 91  PACRYDLGRS 100

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 8/59 (13%)

Query: 238 LQDIKEQTMCPVCLDRLKN-MIFLCGHGTCQMC-------GDRMSECPICRKAVEKRIL 288
           +  ++E+ +CP+CLD L+  +   CGH  C  C            +CP+C+ +V K  +
Sbjct: 14  VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 236 QQLQDIKEQTMCPVCLDRLKNMIFLCGHGTCQMCGD----RMSECPICRKAVEK 285
            +++ + ++  C +C+D   ++I  C H  CQ C D    R   CPICR  +  
Sbjct: 7   GRVKQLTDEEECCICMDGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTG 60

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 12/63 (19%)

Query: 238 LQDIKEQTMCPVCLDRLKN-MIFLCGHGTCQMC-----------GDRMSECPICRKAVEK 285
             +++E+  CP+CL+ L   +   CGH  C+ C               S CP+C  +   
Sbjct: 6   SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65

Query: 286 RIL 288
             L
Sbjct: 66  EHL 68

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 11/65 (16%)

Query: 235 QQQLQDIKEQTMCPVCLDRLKN-MIFLCGHGTCQMC----------GDRMSECPICRKAV 283
              L+ IKE+  CP+CL+ LK  +   C H  C+ C           D    CP+CR   
Sbjct: 10  SSVLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69

Query: 284 EKRIL 288
               L
Sbjct: 70  PFGNL 74

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 9/52 (17%)

Query: 8   ADKKSSASIACFLAGNGADLSIKNKKGQTPL---------DLCPDPNLCKAL 50
            + ++   I+ FL   GAD+  + K+G T           D+     LCK  
Sbjct: 49  NNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIF 100

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 39.6 bits (92), Expect = 8e-04
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 7   AADKKSSASIACFLAGNGADLSIKNKKGQTPLDL 40
           AA +  + SI   L   GAD  I NK G  P+D 
Sbjct: 290 AA-RLGNISIVDALLDYGADPFIANKSGLRPVDF 322

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	290
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.39
2ea5_A	68	Cell growth regulator with ring finger domain prot	99.36
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	99.27
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.24
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	99.23
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	99.21
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	99.21
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	99.15
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	99.09
2ea5_A	68	Cell growth regulator with ring finger domain prot	99.08
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	99.0
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.99
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.98
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	98.96
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	98.95
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	98.94
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.93
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.92
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.91
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	98.9
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	98.9
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.88
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	98.87
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.87
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.85
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	98.84
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.84
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	98.82
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	98.81
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.81
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	98.78
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	98.78
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	98.78
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	98.76
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	98.75
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	98.74
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	98.74
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.72
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	98.72
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	98.71
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	98.69
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.69
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.68
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.68
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	98.68
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.67
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.66
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	98.65
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	98.64
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.63
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.63
2ect_A	78	Ring finger protein 126; metal binding protein, st	98.61
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.6
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.58
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.56
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.55
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.55
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.52
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	98.46
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.45
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.44
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.41
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.41
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	98.41
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	98.39
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.37
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.29
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.25
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	98.22
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.17
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	98.16
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	98.16
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.12
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	98.09
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	98.08
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.0
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	97.99
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	97.98
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	97.98
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	97.98
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	97.98
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	97.96
2ect_A	78	Ring finger protein 126; metal binding protein, st	97.94
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	97.91
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	97.88
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	97.88
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	97.85
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	97.85
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	97.83
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	97.8
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	97.8
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	97.79
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	97.74
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	97.72
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	97.7
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	97.66
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	97.62
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	97.62
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	97.58
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	97.56
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	97.52
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	97.52
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	97.51
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	97.5
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	97.49
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	97.43
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	97.42
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	97.39
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	97.33
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	97.31
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	97.31
1z6u_A	150	NP95-like ring finger protein isoform B; structura	97.29
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	97.26
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	97.15
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	97.14
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	97.08
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	96.85
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	96.83
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	96.72
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	96.64
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	96.57
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	96.42
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	96.34
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	96.3
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	96.15
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	96.11
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	95.82
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	95.41
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	95.4
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	95.13
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	95.08
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	94.82
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	94.74
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	94.43
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	94.39
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	94.39
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	94.2
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	94.15
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	94.06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	93.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	93.9
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	93.9
4gpm_A	169	Engineered protein OR264; de novo protein, structu	93.68
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	93.53
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	93.52
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	93.46
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	93.27
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	93.24
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	93.24
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	93.19
4gpm_A	169	Engineered protein OR264; de novo protein, structu	93.04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	92.83
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	92.68
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	92.64
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	92.43
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	92.38
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	92.38
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	92.21
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	92.08
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	91.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	91.94
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	91.63
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	91.62
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	91.59
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	91.56
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	91.05
3v30_A	172	DNA-binding protein rfxank; structural genomics co	90.8
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	90.64
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	90.64
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	90.39
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	90.22
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	90.22
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	90.13
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	90.12
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	89.91
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	89.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	89.71
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	89.7
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	89.68
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	89.56
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	89.46
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	89.46
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	88.92
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	88.91
2rfa_A	232	Transient receptor potential cation channel subfa	88.9
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	88.87
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	88.85
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	88.84
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	88.62
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	88.58
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	88.56
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	88.29
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	88.16
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	88.16
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	88.08
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	88.05
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	87.98
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	87.98
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	87.85
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	87.77
2jrp_A	81	Putative cytoplasmic protein; two-zinc binding pro	87.71
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	87.26
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	87.09
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	86.75
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	86.67
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	86.62
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	86.42
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	86.28
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	86.28
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	86.2
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	86.2
3v30_A	172	DNA-binding protein rfxank; structural genomics co	86.14
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	86.01
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	85.77
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	85.74
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	85.56
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	85.53
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	85.44
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	85.16
2etb_A	256	Transient receptor potential cation channel subfam	85.12
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	84.94
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	84.88
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	84.67
3jxi_A	260	Vanilloid receptor-related osmotically activated p	84.57
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	84.23
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	84.18
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	83.98
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	83.87
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	83.65
3hra_A	201	Ankyrin repeat family protein; structural protein;	83.49
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	83.28
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	82.92
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	82.86
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	82.76
2etb_A	256	Transient receptor potential cation channel subfam	82.16
2rfa_A	232	Transient receptor potential cation channel subfa	81.79
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	81.38
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	80.96
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	80.91
3jxi_A	260	Vanilloid receptor-related osmotically activated p	80.38
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	80.14
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	80.07
2pnn_A	273	Transient receptor potential cation channel subfa	80.04

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.39  E-value=5.9e-14  Score=112.85  Aligned_cols=97  Identities=26%  Similarity=0.663  Sum_probs=72.5

Q ss_pred             cccccccccCCce-------EEeCCCCeecchhhHhc----CCCCCCCCcccccccceeeecCCCCccccccCCCChhhh
Q psy7970         126 EECMVCSLKKASV-------LFKPCYHMVACESCASL----MKKCVQCRTQIDHMHPMVVCCGGPGIISEVQHTTDPAEE  194 (290)
Q Consensus       126 ~~C~~C~~~~~~~-------~~~PCgH~~~C~~Ca~~----~~~Cp~Cr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e  194 (290)
                      ..|.||++...+.       +.+||||. +|..|..+    ...||.||+.+....-.                      
T Consensus         8 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~----------------------   64 (133)
T 4ap4_A            8 VSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYH----------------------   64 (133)
T ss_dssp             CBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTTCSBCTTTCCBCTTTCEE----------------------
T ss_pred             CCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHhCCCCCCCCCcCcccccc----------------------
Confidence            4677777665544       89999998 99999954    46999999887543110                      


Q ss_pred             hhhhccCCCCccchhhhccccccccccCCCCCChhHHHHHHHHHHhccCCCcccccccccccc-------ccc-cCCccc
Q psy7970         195 ENAVALSPNTSAATLVEASTSGALMNNGSRDTSTSDIQKLQQQLQDIKEQTMCPVCLDRLKNM-------IFL-CGHGTC  266 (290)
Q Consensus       195 ~n~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~l~e~~~C~IC~~~~~~~-------v~~-CGH~fC  266 (290)
                                            ++    .                ..++...|+||++.+.++       +.. |||.||
T Consensus        65 ----------------------~l----~----------------i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc  102 (133)
T 4ap4_A           65 ----------------------PI----Y----------------IGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFC  102 (133)
T ss_dssp             ----------------------EC----B----------------CSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEE
T ss_pred             ----------------------cc----c----------------cCCCCCCCCCCCCccccccccCcceEeCCCCChhh
Confidence                                  00    0                003568899999999886       454 999999


Q ss_pred             hHHHhcC----CCCCCCcccccccc
Q psy7970         267 QMCGDRM----SECPICRKAVEKRI  287 (290)
Q Consensus       267 ~~C~~~~----~~CP~CR~~i~~~~  287 (290)
                      ..|+.+|    ..||+||.++....
T Consensus       103 ~~Ci~~~~~~~~~CP~Cr~~~~~~~  127 (133)
T 4ap4_A          103 SQCLRDSLKNANTCPTCRKKINHKR  127 (133)
T ss_dssp             HHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred             HHHHHHHHHcCCCCCCCCCcCChhc
Confidence            9999987    48999999997654

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=4.4e-13  Score=97.04  Aligned_cols=54  Identities=20%  Similarity=0.618  Sum_probs=49.2

Q ss_pred             CCCCCCCccccccccCcceEeecCCCcccccchhhhhccCCCCCCcchhhcccc
Q psy7970          73 EDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKIE  126 (290)
Q Consensus        73 ~~~~~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~~~Cp~Cr~~i~~~~~i~  126 (290)
                      ....+...|.||+++.++++|+||||.++|..|+..+++||+||++|..+++++
T Consensus        10 ~~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~   63 (68)
T 2ea5_A           10 PSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALS   63 (68)
T ss_dssp             CSCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCC
T ss_pred             ccCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEee
Confidence            344566799999999999999999999999999999999999999999988765

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=99.27  E-value=1.3e-12  Score=95.83  Aligned_cols=57  Identities=30%  Similarity=0.897  Sum_probs=49.9

Q ss_pred             HHHHHHhccCCCccccccccccccccc-cCCc-cchHHHhcCCCCCCCcccccccccCC
Q psy7970         234 LQQQLQDIKEQTMCPVCLDRLKNMIFL-CGHG-TCQMCGDRMSECPICRKAVEKRILLY  290 (290)
Q Consensus       234 l~~~~~~l~e~~~C~IC~~~~~~~v~~-CGH~-fC~~C~~~~~~CP~CR~~i~~~~~~y  290 (290)
                      ++++++.++++..|+||++.+.+++++ |||. ||..|+..|..||+||++|...+.+|
T Consensus        14 ~~~~~~~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~   72 (74)
T 4ic3_A           14 TEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIL   72 (74)
T ss_dssp             HHHHHHHHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEECB
T ss_pred             HHHHHhcCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEEe
Confidence            334555667789999999999999885 9999 99999999999999999999888776

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.24  E-value=3e-12  Score=102.74  Aligned_cols=92  Identities=28%  Similarity=0.667  Sum_probs=74.5

Q ss_pred             CCCCccccccccCcce-------EeecCCCcccccchhhhh----ccCCCCCCcchhhcc--------ccccccccccCC
Q psy7970          76 VTLDECRICSDLKRDI-------LFQPCGHVACCSVCAPRV----KKCLICREPVEKRIK--------IEECMVCSLKKA  136 (290)
Q Consensus        76 ~~~~~C~iC~~~~~~~-------~~~PCgH~~~C~~Ca~~~----~~Cp~Cr~~i~~~~~--------i~~C~~C~~~~~  136 (290)
                      .+...|.||++...+.       +.+||||. +|..|..+.    ..||+||+.+.....        ...|.+|++...
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~~~~~~C~iC~~~~~   83 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYS   83 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCSSSSCBCTTTCCBHH
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHhCCCCCCCCCcCccccccccccCCCCCCCCCCCCccc
Confidence            3456899999987665       89999996 699998654    589999999875332        358999998765


Q ss_pred             ce-------EEeCCCCeecchhhHh----cCCCCCCCCcccccc
Q psy7970         137 SV-------LFKPCYHMVACESCAS----LMKKCVQCRTQIDHM  169 (290)
Q Consensus       137 ~~-------~~~PCgH~~~C~~Ca~----~~~~Cp~Cr~~i~~~  169 (290)
                      ..       +.+||||. +|..|..    ..+.||.||.++...
T Consensus        84 ~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~  126 (133)
T 4ap4_A           84 EIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHK  126 (133)
T ss_dssp             HHHHTTCCEEEETTSBE-EEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             cccccCcceEeCCCCCh-hhHHHHHHHHHcCCCCCCCCCcCChh
Confidence            54       88999999 9999995    357999999998753

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=99.23  E-value=1.9e-12  Score=96.42  Aligned_cols=58  Identities=38%  Similarity=0.883  Sum_probs=51.8

Q ss_pred             HHHHHHHhccCCCccccccccccccccc-cCCc-cchHHHhcCCCCCCCcccccccccCC
Q psy7970         233 KLQQQLQDIKEQTMCPVCLDRLKNMIFL-CGHG-TCQMCGDRMSECPICRKAVEKRILLY  290 (290)
Q Consensus       233 ~l~~~~~~l~e~~~C~IC~~~~~~~v~~-CGH~-fC~~C~~~~~~CP~CR~~i~~~~~~y  290 (290)
                      .++++++.+++...|+||++.+.++++. |||. ||..|+..++.||+||.++...+.+|
T Consensus         7 ~l~~~~~~l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~   66 (79)
T 2yho_A            7 VLQEKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVY   66 (79)
T ss_dssp             THHHHHHHHHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEEECB
T ss_pred             HHHHHHHcCCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeEEEE
Confidence            3667777778889999999999999885 9999 99999999999999999998887765

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=4e-12  Score=93.37  Aligned_cols=55  Identities=31%  Similarity=0.958  Sum_probs=48.3

Q ss_pred             HHHHhccCCCccccccccccccccc-cCCc-cchHHHhcCCCCCCCcccccccccCC
Q psy7970         236 QQLQDIKEQTMCPVCLDRLKNMIFL-CGHG-TCQMCGDRMSECPICRKAVEKRILLY  290 (290)
Q Consensus       236 ~~~~~l~e~~~C~IC~~~~~~~v~~-CGH~-fC~~C~~~~~~CP~CR~~i~~~~~~y  290 (290)
                      +.+++++++..|+||++.+.+++++ |||. ||..|+..+..||+||+++...+.+|
T Consensus        17 ~~~~~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~   73 (75)
T 2ecg_A           17 EQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIF   73 (75)
T ss_dssp             HHHHHHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBCC
T ss_pred             HHHHcCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEEe
Confidence            3444556678999999999999885 9999 99999999999999999999988887

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=99.21  E-value=2.4e-12  Score=91.66  Aligned_cols=52  Identities=33%  Similarity=0.650  Sum_probs=46.9

Q ss_pred             CCCCCccccccccCcceEee--cCCCcccccchhhhhc----cCCCCCCcchhhcccc
Q psy7970          75 MVTLDECRICSDLKRDILFQ--PCGHVACCSVCAPRVK----KCLICREPVEKRIKIE  126 (290)
Q Consensus        75 ~~~~~~C~iC~~~~~~~~~~--PCgH~~~C~~Ca~~~~----~Cp~Cr~~i~~~~~i~  126 (290)
                      .....+|.||+++.++++++  ||||+++|..|+.++.    +||+||++|...+++|
T Consensus         4 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~   61 (63)
T 2vje_B            4 QNLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVF   61 (63)
T ss_dssp             GGGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEE
T ss_pred             CCcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEe
Confidence            34567899999999998888  9999999999999987    9999999999988876

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=99.15  E-value=5.7e-12  Score=89.95  Aligned_cols=52  Identities=25%  Similarity=0.678  Sum_probs=46.6

Q ss_pred             CCCCCccccccccCcceEee--cCCCcccccchhhhhc----cCCCCCCcchhhcccc
Q psy7970          75 MVTLDECRICSDLKRDILFQ--PCGHVACCSVCAPRVK----KCLICREPVEKRIKIE  126 (290)
Q Consensus        75 ~~~~~~C~iC~~~~~~~~~~--PCgH~~~C~~Ca~~~~----~Cp~Cr~~i~~~~~i~  126 (290)
                      ..+..+|.||+++.++++|+  ||||.++|..|+.++.    .||+||++|...+++|
T Consensus         5 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~   62 (64)
T 2vje_A            5 LNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY   62 (64)
T ss_dssp             CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEE
T ss_pred             CCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeee
Confidence            34567899999999999998  9999999999999885    4999999999888876

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=99.09  E-value=2.1e-11  Score=90.66  Aligned_cols=50  Identities=32%  Similarity=0.836  Sum_probs=46.5

Q ss_pred             CCCccccccccCcceEeecCCCcccccchhhhhccCCCCCCcchhhcccc
Q psy7970          77 TLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKIE  126 (290)
Q Consensus        77 ~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~~~Cp~Cr~~i~~~~~i~  126 (290)
                      +...|.||++..++++|+||||.++|..|+..++.||+||++|..++++|
T Consensus        17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~   66 (79)
T 2yho_A           17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVY   66 (79)
T ss_dssp             HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEEECB
T ss_pred             CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeEEEE
Confidence            34589999999999999999999999999999999999999999988766

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=4.7e-11  Score=86.27  Aligned_cols=50  Identities=22%  Similarity=0.685  Sum_probs=46.9

Q ss_pred             ccccccccccCCceEEeCCCCeecchhhHhcCCCCCCCCcccccccceee
Q psy7970         125 IEECMVCSLKKASVLFKPCYHMVACESCASLMKKCVQCRTQIDHMHPMVV  174 (290)
Q Consensus       125 i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~~~~Cp~Cr~~i~~~~~~~~  174 (290)
                      ...|.||++...+++|+||||.++|..|+.+++.||+||.+|...+++|.
T Consensus        15 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~   64 (68)
T 2ea5_A           15 SKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSG   64 (68)
T ss_dssp             SSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCCS
T ss_pred             CCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEeec
Confidence            46899999999999999999999999999999999999999999888763

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=99.00  E-value=1e-10  Score=85.63  Aligned_cols=51  Identities=37%  Similarity=0.787  Sum_probs=47.0

Q ss_pred             CCCccccccccCcceEeecCCCcccccchhhhhccCCCCCCcchhhccccc
Q psy7970          77 TLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKIEE  127 (290)
Q Consensus        77 ~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~~~Cp~Cr~~i~~~~~i~~  127 (290)
                      +...|.||++...+.+++||||.++|..|...+..||+||++|..++++|.
T Consensus        23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~   73 (74)
T 4ic3_A           23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKILM   73 (74)
T ss_dssp             HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEECBC
T ss_pred             cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEEee
Confidence            346899999999999999999999999999999999999999999888763

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=1.2e-10  Score=85.38  Aligned_cols=50  Identities=38%  Similarity=0.796  Sum_probs=46.3

Q ss_pred             CCccccccccCcceEeecCCCcccccchhhhhccCCCCCCcchhhccccc
Q psy7970          78 LDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKIEE  127 (290)
Q Consensus        78 ~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~~~Cp~Cr~~i~~~~~i~~  127 (290)
                      ..+|.||++..++.+++||||.++|..|..++..||+||++|..++++|.
T Consensus        25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~   74 (75)
T 2ecg_A           25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFM   74 (75)
T ss_dssp             HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBCCC
T ss_pred             CCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEEec
Confidence            45799999999999999999999999999999999999999999888763

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.98  E-value=1.4e-10  Score=82.43  Aligned_cols=50  Identities=22%  Similarity=0.550  Sum_probs=44.8

Q ss_pred             ccccccccccCCceEEe--CCCCeecchhhHhcCC----CCCCCCcccccccceee
Q psy7970         125 IEECMVCSLKKASVLFK--PCYHMVACESCASLMK----KCVQCRTQIDHMHPMVV  174 (290)
Q Consensus       125 i~~C~~C~~~~~~~~~~--PCgH~~~C~~Ca~~~~----~Cp~Cr~~i~~~~~~~~  174 (290)
                      ...|.||++...+++++  ||||.++|..|+.++.    +||+||++|.+.+++|.
T Consensus         7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~   62 (63)
T 2vje_B            7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFI   62 (63)
T ss_dssp             GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEE
T ss_pred             CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEec
Confidence            45899999999888777  9999999999998776    99999999999988874

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.96  E-value=2e-10  Score=83.14  Aligned_cols=48  Identities=35%  Similarity=1.023  Sum_probs=41.7

Q ss_pred             hccCCCccccccccccccccc-cCCccchHHHhcCC-------CCCCCcccccccc
Q psy7970         240 DIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRMS-------ECPICRKAVEKRI  287 (290)
Q Consensus       240 ~l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~~-------~CP~CR~~i~~~~  287 (290)
                      .+++...|+||++.+.+|+++ |||.||..|+..|.       .||+||+++....
T Consensus        16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   71 (73)
T 2ysl_A           16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA   71 (73)
T ss_dssp             CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred             hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence            456789999999999999775 99999999999875       6999999987654

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.95  E-value=1.7e-10  Score=83.70  Aligned_cols=50  Identities=26%  Similarity=0.587  Sum_probs=42.7

Q ss_pred             hccCCCcccccccccccccc--ccCCccchHHHhcC----CCCCCCcccccccccC
Q psy7970         240 DIKEQTMCPVCLDRLKNMIF--LCGHGTCQMCGDRM----SECPICRKAVEKRILL  289 (290)
Q Consensus       240 ~l~e~~~C~IC~~~~~~~v~--~CGH~fC~~C~~~~----~~CP~CR~~i~~~~~~  289 (290)
                      ++++...|+||++.+.+|++  .|||.||..|+..|    ..||+||+.+.....+
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~   66 (72)
T 2djb_A           11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPL   66 (72)
T ss_dssp             CCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSC
T ss_pred             hcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccc
Confidence            45678999999999999965  49999999999987    3799999999776554

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=98.94  E-value=2.3e-10  Score=93.49  Aligned_cols=48  Identities=29%  Similarity=0.815  Sum_probs=41.3

Q ss_pred             HhccCCCccccccccccccccc-cCCccchHHHhcCC----CCCCCccccccc
Q psy7970         239 QDIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRMS----ECPICRKAVEKR  286 (290)
Q Consensus       239 ~~l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~~----~CP~CR~~i~~~  286 (290)
                      +.+++++.|+||++.+.+|+++ |||.||..|+..|+    .||+||+++...
T Consensus        48 ~~~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~  100 (138)
T 4ayc_A           48 DVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK  100 (138)
T ss_dssp             HHHHHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred             HhccccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence            3456778999999999999775 99999999999874    699999998653

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.93  E-value=3.2e-10  Score=84.12  Aligned_cols=51  Identities=31%  Similarity=0.864  Sum_probs=41.4

Q ss_pred             hccCCCcccccccccc--cccc-c--cCCccchHHHhcCC-----CCCCCcccccccccCC
Q psy7970         240 DIKEQTMCPVCLDRLK--NMIF-L--CGHGTCQMCGDRMS-----ECPICRKAVEKRILLY  290 (290)
Q Consensus       240 ~l~e~~~C~IC~~~~~--~~v~-~--CGH~fC~~C~~~~~-----~CP~CR~~i~~~~~~y  290 (290)
                      .++++..||||++.+.  ++.+ +  |||.||..|+..+|     .||.||+++..+..+|
T Consensus         7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~   67 (78)
T 1e4u_A            7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVY   67 (78)
T ss_dssp             CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCC
T ss_pred             ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhh
Confidence            3578899999999884  4444 3  99999999999875     6999999998766554

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.92  E-value=2.4e-10  Score=91.56  Aligned_cols=50  Identities=30%  Similarity=0.644  Sum_probs=43.0

Q ss_pred             HHHHhccCCCccccccccccccccc-cCCccchHHHhcCC-----CCCCCcccccc
Q psy7970         236 QQLQDIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRMS-----ECPICRKAVEK  285 (290)
Q Consensus       236 ~~~~~l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~~-----~CP~CR~~i~~  285 (290)
                      ..++.+++++.|+||++.+.+|+++ |||+||..|+..|+     .||+||+++..
T Consensus        44 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           44 LFLSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHHHHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             HHHHhCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            3455667789999999999999775 99999999998763     79999999966

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.91  E-value=2.7e-10  Score=81.19  Aligned_cols=50  Identities=28%  Similarity=0.575  Sum_probs=44.8

Q ss_pred             ccccccccccCCceEEe--CCCCeecchhhHhcCC----CCCCCCcccccccceee
Q psy7970         125 IEECMVCSLKKASVLFK--PCYHMVACESCASLMK----KCVQCRTQIDHMHPMVV  174 (290)
Q Consensus       125 i~~C~~C~~~~~~~~~~--PCgH~~~C~~Ca~~~~----~Cp~Cr~~i~~~~~~~~  174 (290)
                      ..+|.||++...+++|+  ||||.+.|..|+.++.    .||+||++|+..+++|+
T Consensus         8 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~   63 (64)
T 2vje_A            8 IEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYF   63 (64)
T ss_dssp             GSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEEC
T ss_pred             cCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeec
Confidence            45899999999999998  9999999999997664    69999999999988874

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=98.90  E-value=3e-10  Score=87.81  Aligned_cols=52  Identities=29%  Similarity=0.701  Sum_probs=43.9

Q ss_pred             HHHHhccCCCcccccccccccccc-c-cCCccchHHHhcC-----CCCCCCcccccccc
Q psy7970         236 QQLQDIKEQTMCPVCLDRLKNMIF-L-CGHGTCQMCGDRM-----SECPICRKAVEKRI  287 (290)
Q Consensus       236 ~~~~~l~e~~~C~IC~~~~~~~v~-~-CGH~fC~~C~~~~-----~~CP~CR~~i~~~~  287 (290)
                      .....+++.+.|+||++.+.+|++ + |||.||..|+..|     ..||+||.++....
T Consensus        14 ~~~~~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   72 (100)
T 3lrq_A           14 QSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE   72 (100)
T ss_dssp             HHHHHHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             cccccCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence            344566788999999999999977 5 9999999999987     37999999986543

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.90  E-value=4.3e-10  Score=80.04  Aligned_cols=48  Identities=23%  Similarity=0.567  Sum_probs=41.5

Q ss_pred             hccCCCccccccccccccccc-cCCccchHHHhcCC-----CCCCCcccccccc
Q psy7970         240 DIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRMS-----ECPICRKAVEKRI  287 (290)
Q Consensus       240 ~l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~~-----~CP~CR~~i~~~~  287 (290)
                      .+++...|+||++.+.+|+.+ |||.||..|+..|+     .||+||+++....
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   64 (66)
T 2ecy_A           11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK   64 (66)
T ss_dssp             SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred             cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence            346789999999999999765 99999999999763     6999999987764

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.88  E-value=3.6e-10  Score=88.40  Aligned_cols=56  Identities=27%  Similarity=0.813  Sum_probs=46.9

Q ss_pred             HHHHHHHHHhccCCCccccccccccccccc-cCCccchHHHhcCC-------CCCCCccccccc
Q psy7970         231 IQKLQQQLQDIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRMS-------ECPICRKAVEKR  286 (290)
Q Consensus       231 ~~~l~~~~~~l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~~-------~CP~CR~~i~~~  286 (290)
                      +++++..++.+++...|+||++.+.+|+++ |||.||..|+..|+       .||+||.++...
T Consensus         8 ~~~~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   71 (112)
T 1jm7_A            8 VEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR   71 (112)
T ss_dssp             HHHHHHHHHHHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred             HHHHHHHHHhccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence            445666667778889999999999999775 99999999999762       699999998654

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=98.87  E-value=4.1e-10  Score=82.19  Aligned_cols=48  Identities=23%  Similarity=0.640  Sum_probs=40.7

Q ss_pred             hccCCCcccccccccccccc-c-cCCccchHHHhcCC------CCCCCcccccccc
Q psy7970         240 DIKEQTMCPVCLDRLKNMIF-L-CGHGTCQMCGDRMS------ECPICRKAVEKRI  287 (290)
Q Consensus       240 ~l~e~~~C~IC~~~~~~~v~-~-CGH~fC~~C~~~~~------~CP~CR~~i~~~~  287 (290)
                      .+++.+.|+||++.+.+|+. . |||.||..|+..|+      .||+||+++....
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~   66 (74)
T 2yur_A           11 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD   66 (74)
T ss_dssp             CSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred             cCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence            45678999999999999965 6 99999999999873      7999999875543

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.87  E-value=7.1e-10  Score=103.96  Aligned_cols=58  Identities=34%  Similarity=0.936  Sum_probs=53.2

Q ss_pred             HHHHHHHhccCCCccccccccccccccc-cCCc-cchHHHhcCCCCCCCcccccccccCC
Q psy7970         233 KLQQQLQDIKEQTMCPVCLDRLKNMIFL-CGHG-TCQMCGDRMSECPICRKAVEKRILLY  290 (290)
Q Consensus       233 ~l~~~~~~l~e~~~C~IC~~~~~~~v~~-CGH~-fC~~C~~~~~~CP~CR~~i~~~~~~y  290 (290)
                      .++++++.++++..|+||++.+.+++++ |||. ||..|+..+..||+||.+|...+.+|
T Consensus       284 ~~~~~~~~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i~  343 (345)
T 3t6p_A          284 SLEEQLRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTF  343 (345)
T ss_dssp             CHHHHHHHHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEECC
T ss_pred             cHHHHHHhCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEee
Confidence            3667788889999999999999999885 9999 99999999999999999999988887

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.85  E-value=5.6e-10  Score=84.51  Aligned_cols=45  Identities=24%  Similarity=0.716  Sum_probs=39.5

Q ss_pred             hccCCCcccccccccccccc-c-cCCccchHHHhcCC------CCCCCccccc
Q psy7970         240 DIKEQTMCPVCLDRLKNMIF-L-CGHGTCQMCGDRMS------ECPICRKAVE  284 (290)
Q Consensus       240 ~l~e~~~C~IC~~~~~~~v~-~-CGH~fC~~C~~~~~------~CP~CR~~i~  284 (290)
                      .+++++.|+||++.+.+|++ . |||+||..|+..|+      .||+||+++.
T Consensus         9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A            9 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             CCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             cCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            45788999999999999966 6 99999999999773      7999999973

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=98.84  E-value=1.2e-09  Score=79.99  Aligned_cols=47  Identities=34%  Similarity=0.891  Sum_probs=40.5

Q ss_pred             hccCCCccccccccccccccc-cCCccchHHHhcC-----------CCCCCCccccccc
Q psy7970         240 DIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRM-----------SECPICRKAVEKR  286 (290)
Q Consensus       240 ~l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~-----------~~CP~CR~~i~~~  286 (290)
                      .++++..|+||++.+.+|+++ |||.||..|+..|           ..||+||+++...
T Consensus         8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~   66 (79)
T 2egp_A            8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE   66 (79)
T ss_dssp             CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred             hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence            457889999999999999765 9999999999975           2699999998653

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.84  E-value=1e-09  Score=75.96  Aligned_cols=44  Identities=27%  Similarity=0.547  Sum_probs=38.8

Q ss_pred             cCCCccccccccccccccc-cCCccchHHHhcC-CCCCCCcccccc
Q psy7970         242 KEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRM-SECPICRKAVEK  285 (290)
Q Consensus       242 ~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~-~~CP~CR~~i~~  285 (290)
                      ++.+.|+||++.+.+|+++ |||+||..|+..+ ..||+||+.+..
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~CP~Cr~~~~~   49 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWPL   49 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSSSSSCSSCCSSSSC
T ss_pred             ccCCCceEeCCccCCeEEcCCCCcccHHHHccCCCCCCcCCcEeec
Confidence            5678999999999999765 9999999999876 479999999854

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=98.82  E-value=8.6e-10  Score=80.91  Aligned_cols=47  Identities=17%  Similarity=0.417  Sum_probs=40.7

Q ss_pred             hccCCCccccccccccccccc-cCCccchHHHhcC-----CCCCCCccccccc
Q psy7970         240 DIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRM-----SECPICRKAVEKR  286 (290)
Q Consensus       240 ~l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~-----~~CP~CR~~i~~~  286 (290)
                      .+.+++.||||++.+.+|+++ |||+||+.|+..|     ..||+||+++...
T Consensus         4 ~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~   56 (78)
T 1t1h_A            4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             CCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence            356789999999999999775 9999999999976     3699999998654

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.81  E-value=9.7e-10  Score=79.39  Aligned_cols=45  Identities=27%  Similarity=0.699  Sum_probs=39.4

Q ss_pred             cCCCccccccccccccccc-cCCccchHHHhcCC----CCCCCccccccc
Q psy7970         242 KEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRMS----ECPICRKAVEKR  286 (290)
Q Consensus       242 ~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~~----~CP~CR~~i~~~  286 (290)
                      .+...|+||++.+.+++++ |||.||..|+..|.    .||+||+.+...
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   62 (71)
T 2d8t_A           13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED   62 (71)
T ss_dssp             SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred             CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence            4668999999999999775 99999999999873    699999998654

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.81  E-value=2.5e-09  Score=84.77  Aligned_cols=52  Identities=21%  Similarity=0.521  Sum_probs=44.1

Q ss_pred             HHHHHhccCCCcccccccccccccc--ccCCccchHHHhcCC--CCCCCccccccc
Q psy7970         235 QQQLQDIKEQTMCPVCLDRLKNMIF--LCGHGTCQMCGDRMS--ECPICRKAVEKR  286 (290)
Q Consensus       235 ~~~~~~l~e~~~C~IC~~~~~~~v~--~CGH~fC~~C~~~~~--~CP~CR~~i~~~  286 (290)
                      ...++.+++.+.|+||++.+.+|++  .|||.||..|+..|+  .||+||.++...
T Consensus        13 ~~~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~   68 (117)
T 1jm7_B           13 RAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQ   68 (117)
T ss_dssp             HHHHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCS
T ss_pred             HHHHHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCccc
Confidence            3455667889999999999999965  499999999999985  699999998543

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.78  E-value=1.2e-09  Score=77.87  Aligned_cols=46  Identities=30%  Similarity=0.855  Sum_probs=39.1

Q ss_pred             ccCCCcccccccccccc-------ccc-cCCccchHHHhcC----CCCCCCccccccc
Q psy7970         241 IKEQTMCPVCLDRLKNM-------IFL-CGHGTCQMCGDRM----SECPICRKAVEKR  286 (290)
Q Consensus       241 l~e~~~C~IC~~~~~~~-------v~~-CGH~fC~~C~~~~----~~CP~CR~~i~~~  286 (290)
                      +++...|+||++.+.++       +++ |||.||..|+..|    ..||+||+++..+
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~r   69 (69)
T 2ea6_A           12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK   69 (69)
T ss_dssp             TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCCC
T ss_pred             CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCcC
Confidence            35778999999999987       554 9999999999988    3799999998653

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.78  E-value=9.7e-10  Score=78.95  Aligned_cols=51  Identities=31%  Similarity=0.748  Sum_probs=41.8

Q ss_pred             hccCCCccccccccccccccccCCccchHHHhcCC----CCCCCcccccccccCC
Q psy7970         240 DIKEQTMCPVCLDRLKNMIFLCGHGTCQMCGDRMS----ECPICRKAVEKRILLY  290 (290)
Q Consensus       240 ~l~e~~~C~IC~~~~~~~v~~CGH~fC~~C~~~~~----~CP~CR~~i~~~~~~y  290 (290)
                      ++++...|+||++.+.+.++.|||.||..|+..|.    .||+||+++......|
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~   65 (70)
T 2ecn_A           11 QLTDEEECCICMDGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANESS   65 (70)
T ss_dssp             CCCCCCCCSSSCCSCCSEEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred             cCCCCCCCeeCCcCccCcccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence            34677999999999999333599999999999884    6999999997765543

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.78  E-value=1.7e-09  Score=80.08  Aligned_cols=44  Identities=23%  Similarity=0.533  Sum_probs=38.9

Q ss_pred             ccCCCccccccccccccccc-cCCccchHHHhcCC----CCCCCccccc
Q psy7970         241 IKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRMS----ECPICRKAVE  284 (290)
Q Consensus       241 l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~~----~CP~CR~~i~  284 (290)
                      .++.+.|+||++.+.+|+++ |||.||..|+..|+    .||+||+++.
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           12 EEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            35678999999999999775 99999999999874    6999999975

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.76  E-value=2.1e-09  Score=76.18  Aligned_cols=45  Identities=31%  Similarity=0.826  Sum_probs=38.0

Q ss_pred             CCCccccccc-cccccc----c-ccCCccchHHHhcC-----CCCCCCcccccccc
Q psy7970         243 EQTMCPVCLD-RLKNMI----F-LCGHGTCQMCGDRM-----SECPICRKAVEKRI  287 (290)
Q Consensus       243 e~~~C~IC~~-~~~~~v----~-~CGH~fC~~C~~~~-----~~CP~CR~~i~~~~  287 (290)
                      ++..||||++ .+.+|+    + .|||.||..|+.+|     ..||+||+++....
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   57 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN   57 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence            5688999999 899983    3 49999999999987     36999999997643

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=98.75  E-value=2.2e-09  Score=77.03  Aligned_cols=46  Identities=30%  Similarity=0.855  Sum_probs=39.3

Q ss_pred             ccCCCcccccccccccc-------ccc-cCCccchHHHhcC----CCCCCCccccccc
Q psy7970         241 IKEQTMCPVCLDRLKNM-------IFL-CGHGTCQMCGDRM----SECPICRKAVEKR  286 (290)
Q Consensus       241 l~e~~~C~IC~~~~~~~-------v~~-CGH~fC~~C~~~~----~~CP~CR~~i~~~  286 (290)
                      .+++..|+||++.+.++       +++ |||.||..|+..|    ..||+||+++...
T Consensus         7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   64 (71)
T 3ng2_A            7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK   64 (71)
T ss_dssp             CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred             CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence            35678999999999987       554 9999999999987    3799999999654

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.74  E-value=2.7e-09  Score=79.68  Aligned_cols=46  Identities=30%  Similarity=0.932  Sum_probs=39.6

Q ss_pred             hccCCCccccccccccc----cccc-cCCccchHHHhcC-------CCCCCCcccccc
Q psy7970         240 DIKEQTMCPVCLDRLKN----MIFL-CGHGTCQMCGDRM-------SECPICRKAVEK  285 (290)
Q Consensus       240 ~l~e~~~C~IC~~~~~~----~v~~-CGH~fC~~C~~~~-------~~CP~CR~~i~~  285 (290)
                      .+++...|+||++.+.+    |+++ |||.||..|+..|       ..||+||+++..
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   68 (88)
T 2ct2_A           11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI   68 (88)
T ss_dssp             CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred             hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence            44678999999999999    8664 9999999999987       479999998854

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.74  E-value=3.9e-09  Score=78.00  Aligned_cols=47  Identities=36%  Similarity=0.817  Sum_probs=40.0

Q ss_pred             hccCCCccccccccccccccc-cCCccchHHHhcC----------CCCCCCccccccc
Q psy7970         240 DIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRM----------SECPICRKAVEKR  286 (290)
Q Consensus       240 ~l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~----------~~CP~CR~~i~~~  286 (290)
                      .+++...|+||++.+.+|+++ |||.||..|+..|          ..||+||+++...
T Consensus        15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~   72 (85)
T 2ecw_A           15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG   72 (85)
T ss_dssp             CCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred             hCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence            346779999999999999765 9999999999864          4799999998653

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.72  E-value=2e-09  Score=80.95  Aligned_cols=48  Identities=15%  Similarity=0.105  Sum_probs=42.4

Q ss_pred             hccCCCccccccccccccccc-cCCccchHHHhcCC----CCCCCcccccccc
Q psy7970         240 DIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRMS----ECPICRKAVEKRI  287 (290)
Q Consensus       240 ~l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~~----~CP~CR~~i~~~~  287 (290)
                      .+.+++.||||++.+.+||++ |||+||+.||..|+    .||+||+++....
T Consensus        10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~   62 (85)
T 2kr4_A           10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESM   62 (85)
T ss_dssp             TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred             cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHh
Confidence            456789999999999999886 99999999999884    7999999987654

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.72  E-value=5e-09  Score=77.43  Aligned_cols=47  Identities=40%  Similarity=0.979  Sum_probs=40.4

Q ss_pred             hccCCCccccccccccccccc-cCCccchHHHhcC----------CCCCCCccccccc
Q psy7970         240 DIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRM----------SECPICRKAVEKR  286 (290)
Q Consensus       240 ~l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~----------~~CP~CR~~i~~~  286 (290)
                      .+++...|+||++.+.+|+++ |||.||..|+..|          ..||+||+.+...
T Consensus        15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~   72 (85)
T 2ecv_A           15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE   72 (85)
T ss_dssp             CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred             HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence            446789999999999999765 9999999999874          4799999998654

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=98.71  E-value=3.8e-09  Score=82.42  Aligned_cols=49  Identities=29%  Similarity=0.642  Sum_probs=42.2

Q ss_pred             HHhccCCCcccccccccccccc--ccCCccchHHHhcC----CCCCCCccccccc
Q psy7970         238 LQDIKEQTMCPVCLDRLKNMIF--LCGHGTCQMCGDRM----SECPICRKAVEKR  286 (290)
Q Consensus       238 ~~~l~e~~~C~IC~~~~~~~v~--~CGH~fC~~C~~~~----~~CP~CR~~i~~~  286 (290)
                      ++.+++++.|+||++.+.+|++  .|||.||..|+..|    ..||+||..+...
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A            9 ITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT   63 (108)
T ss_dssp             HHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred             hhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence            3456788999999999999965  49999999999987    4799999998653

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.69  E-value=3.4e-09  Score=74.50  Aligned_cols=40  Identities=38%  Similarity=1.140  Sum_probs=34.9

Q ss_pred             hccCCCccccccccccccccc-cCCccchHHHhcCC-------CCCCC
Q psy7970         240 DIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRMS-------ECPIC  279 (290)
Q Consensus       240 ~l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~~-------~CP~C  279 (290)
                      .++++..|+||++.+.+|+++ |||.||..|+.+|+       .||+|
T Consensus        16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            456789999999999999775 99999999999773       69987

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.69  E-value=3.6e-09  Score=83.40  Aligned_cols=44  Identities=30%  Similarity=0.774  Sum_probs=38.7

Q ss_pred             cCCCccccccccccccccc-cCCccchHHHhcCC-----CCCCCcccccc
Q psy7970         242 KEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRMS-----ECPICRKAVEK  285 (290)
Q Consensus       242 ~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~~-----~CP~CR~~i~~  285 (290)
                      ++++.|+||++.+.+|+++ |||+||..|+..|+     .||+||+.+..
T Consensus        13 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           13 LSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            4568999999999999775 99999999999885     69999999853

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.68  E-value=5.4e-09  Score=80.72  Aligned_cols=48  Identities=13%  Similarity=0.088  Sum_probs=42.4

Q ss_pred             hccCCCccccccccccccccc-cC-CccchHHHhcCC----CCCCCcccccccc
Q psy7970         240 DIKEQTMCPVCLDRLKNMIFL-CG-HGTCQMCGDRMS----ECPICRKAVEKRI  287 (290)
Q Consensus       240 ~l~e~~~C~IC~~~~~~~v~~-CG-H~fC~~C~~~~~----~CP~CR~~i~~~~  287 (290)
                      .+.+++.||||++++++||++ || |+||+.||..|+    .||+||+++....
T Consensus        18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~   71 (98)
T 1wgm_A           18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQ   71 (98)
T ss_dssp             SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTT
T ss_pred             cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhh
Confidence            456789999999999999886 99 999999999886    6999999987654

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.68  E-value=4.7e-09  Score=81.39  Aligned_cols=48  Identities=15%  Similarity=0.106  Sum_probs=42.5

Q ss_pred             hccCCCccccccccccccccc-cCCccchHHHhcCC----CCCCCcccccccc
Q psy7970         240 DIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRMS----ECPICRKAVEKRI  287 (290)
Q Consensus       240 ~l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~~----~CP~CR~~i~~~~  287 (290)
                      .+.+++.||||++.+.+||++ |||+||+.||..|+    .||+||+++....
T Consensus        25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~   77 (100)
T 2kre_A           25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESM   77 (100)
T ss_dssp             SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTS
T ss_pred             cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhh
Confidence            456889999999999999875 99999999999886    6999999987654

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=98.68  E-value=3.4e-09  Score=81.36  Aligned_cols=46  Identities=24%  Similarity=0.753  Sum_probs=39.4

Q ss_pred             hccCCCcccccccccccccc--ccCCccchHHHhcCC----CCCCCcccccc
Q psy7970         240 DIKEQTMCPVCLDRLKNMIF--LCGHGTCQMCGDRMS----ECPICRKAVEK  285 (290)
Q Consensus       240 ~l~e~~~C~IC~~~~~~~v~--~CGH~fC~~C~~~~~----~CP~CR~~i~~  285 (290)
                      .+++...|+||++.+.+|++  .|||.||..|+..|+    .||+||.++..
T Consensus        18 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             hCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence            34567899999999999955  499999999999873    79999999865

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.67  E-value=4.6e-09  Score=87.17  Aligned_cols=49  Identities=27%  Similarity=0.685  Sum_probs=42.0

Q ss_pred             HHhccCCCccccccccccccccc-cCCccchHHHhcCC-----CCCCCccccccc
Q psy7970         238 LQDIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRMS-----ECPICRKAVEKR  286 (290)
Q Consensus       238 ~~~l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~~-----~CP~CR~~i~~~  286 (290)
                      ++.+++.+.|+||++.+.+|+++ |||+||..|+..|+     .||+||.++...
T Consensus        72 ~~~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           72 LKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HHHHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             HHhCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            34556779999999999999775 99999999999873     699999998765

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.66  E-value=7.3e-09  Score=71.28  Aligned_cols=40  Identities=38%  Similarity=1.045  Sum_probs=34.5

Q ss_pred             hccCCCccccccccccccccc-cCCccchHHHhcC-------CCCCCC
Q psy7970         240 DIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRM-------SECPIC  279 (290)
Q Consensus       240 ~l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~-------~~CP~C  279 (290)
                      .+++...|+||++.+.+|+++ |||.||..|+..|       ..||+|
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            346789999999999999775 9999999999987       268887

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=98.65  E-value=4.9e-09  Score=73.46  Aligned_cols=44  Identities=32%  Similarity=0.877  Sum_probs=37.5

Q ss_pred             CCCcccccccccccc-------cc-ccCCccchHHHhcCC----CCCCCccccccc
Q psy7970         243 EQTMCPVCLDRLKNM-------IF-LCGHGTCQMCGDRMS----ECPICRKAVEKR  286 (290)
Q Consensus       243 e~~~C~IC~~~~~~~-------v~-~CGH~fC~~C~~~~~----~CP~CR~~i~~~  286 (290)
                      ++..|+||++.+.++       ++ .|||.||..|+..|.    .||+||+++...
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   57 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK   57 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence            568999999999886       44 499999999999873    799999999653

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=98.64  E-value=8e-09  Score=73.56  Aligned_cols=46  Identities=33%  Similarity=0.813  Sum_probs=38.7

Q ss_pred             cCCCcccccccccccc-cc-ccCCccchHHHhcC----CCCCCCcccccccc
Q psy7970         242 KEQTMCPVCLDRLKNM-IF-LCGHGTCQMCGDRM----SECPICRKAVEKRI  287 (290)
Q Consensus       242 ~e~~~C~IC~~~~~~~-v~-~CGH~fC~~C~~~~----~~CP~CR~~i~~~~  287 (290)
                      ++...|+||++.+.++ ++ .|||.||..|+..|    ..||+||+++....
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   54 (68)
T 1chc_A            3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVV   54 (68)
T ss_dssp             CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCEE
T ss_pred             CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhhh
Confidence            4678999999999997 44 49999999999987    47999999986543

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.63  E-value=6.4e-09  Score=82.10  Aligned_cols=46  Identities=28%  Similarity=0.543  Sum_probs=39.5

Q ss_pred             cCCCccccccccccccccc-cCCccchHHHhcC-----CCCCCCcccccccc
Q psy7970         242 KEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRM-----SECPICRKAVEKRI  287 (290)
Q Consensus       242 ~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~-----~~CP~CR~~i~~~~  287 (290)
                      ++++.|+||++.+.+|+.+ |||.||..|+..|     ..||+||.++....
T Consensus        21 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   72 (116)
T 1rmd_A           21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD   72 (116)
T ss_dssp             HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             cCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence            4568999999999999775 9999999999976     36999999986543

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.63  E-value=6.7e-09  Score=82.42  Aligned_cols=47  Identities=26%  Similarity=0.711  Sum_probs=41.2

Q ss_pred             hccCCCccccccccccccccc-cCCccchHHHhcC-----CCCCCCccccccc
Q psy7970         240 DIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRM-----SECPICRKAVEKR  286 (290)
Q Consensus       240 ~l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~-----~~CP~CR~~i~~~  286 (290)
                      .+++.+.|+||++.+.+|+++ |||.||..|+..|     ..||+||.++...
T Consensus        14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (118)
T 3hct_A           14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (118)
T ss_dssp             CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence            456789999999999999775 9999999999987     3899999998764

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.61  E-value=1.2e-08  Score=74.79  Aligned_cols=47  Identities=26%  Similarity=0.547  Sum_probs=38.8

Q ss_pred             ccCCCcccccccccccc---c-cccCCccchHHHhcC----CCCCCCcccccccc
Q psy7970         241 IKEQTMCPVCLDRLKNM---I-FLCGHGTCQMCGDRM----SECPICRKAVEKRI  287 (290)
Q Consensus       241 l~e~~~C~IC~~~~~~~---v-~~CGH~fC~~C~~~~----~~CP~CR~~i~~~~  287 (290)
                      +++...|+||++.+.++   + +.|||.||..|+..|    ..||+||+.+....
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   66 (78)
T 2ect_A           12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN   66 (78)
T ss_dssp             SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred             CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence            35678999999998866   2 249999999999987    37999999987654

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=98.60  E-value=1.7e-08  Score=68.79  Aligned_cols=44  Identities=36%  Similarity=0.848  Sum_probs=37.1

Q ss_pred             ccCCCccccccccccc---c-ccc-cCCccchHHHhcCC----CCCCCccccc
Q psy7970         241 IKEQTMCPVCLDRLKN---M-IFL-CGHGTCQMCGDRMS----ECPICRKAVE  284 (290)
Q Consensus       241 l~e~~~C~IC~~~~~~---~-v~~-CGH~fC~~C~~~~~----~CP~CR~~i~  284 (290)
                      ++++..|+||++.+.+   + +++ |||.||..|+..|.    .||+||+++.
T Consensus         2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            4678899999999988   4 445 99999999999884    7999998763

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.58  E-value=1.7e-08  Score=73.12  Aligned_cols=48  Identities=25%  Similarity=0.585  Sum_probs=39.3

Q ss_pred             ccCCCcccccccccccc-cc---ccCCccchHHHhcC----CCCCCCccccccccc
Q psy7970         241 IKEQTMCPVCLDRLKNM-IF---LCGHGTCQMCGDRM----SECPICRKAVEKRIL  288 (290)
Q Consensus       241 l~e~~~C~IC~~~~~~~-v~---~CGH~fC~~C~~~~----~~CP~CR~~i~~~~~  288 (290)
                      ++++..|+||++.+.++ .+   .|||.||..|+..|    ..||+||+++.....
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~   67 (74)
T 2ep4_A           12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ   67 (74)
T ss_dssp             CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred             CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccccc
Confidence            45678999999999876 22   59999999999987    379999999866443

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.56  E-value=2.9e-08  Score=92.99  Aligned_cols=52  Identities=33%  Similarity=0.864  Sum_probs=47.4

Q ss_pred             CCCCccccccccCcceEeecCCCcccccchhhhhccCCCCCCcchhhccccc
Q psy7970          76 VTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPVEKRIKIEE  127 (290)
Q Consensus        76 ~~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~~~Cp~Cr~~i~~~~~i~~  127 (290)
                      .+...|.||++...+.+++||||.++|..|+..+..||+||.+|..++++|.
T Consensus       293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i~~  344 (345)
T 3t6p_A          293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTFL  344 (345)
T ss_dssp             HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEECC-
T ss_pred             cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEeec
Confidence            3456899999999999999999999999999999999999999999988763

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.55  E-value=2e-08  Score=68.30  Aligned_cols=42  Identities=29%  Similarity=0.788  Sum_probs=35.6

Q ss_pred             CCCccccccccccc----ccc-ccCCccchHHHhcC----CCCCCCccccc
Q psy7970         243 EQTMCPVCLDRLKN----MIF-LCGHGTCQMCGDRM----SECPICRKAVE  284 (290)
Q Consensus       243 e~~~C~IC~~~~~~----~v~-~CGH~fC~~C~~~~----~~CP~CR~~i~  284 (290)
                      ++..|+||++.+.+    +++ .|||.||..|+..|    ..||+||+++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            56889999999866    444 49999999999988    47999999875

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.55  E-value=6.4e-09  Score=85.47  Aligned_cols=45  Identities=22%  Similarity=0.670  Sum_probs=39.8

Q ss_pred             HhccCCCccccccccccccccc-cCCccchHHHhcCC-----CCCCCcccc
Q psy7970         239 QDIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRMS-----ECPICRKAV  283 (290)
Q Consensus       239 ~~l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~~-----~CP~CR~~i  283 (290)
                      +.+++++.|+||++.+.+|+.+ |||.||..|+..|+     .||+||.++
T Consensus        26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~   76 (141)
T 3knv_A           26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG   76 (141)
T ss_dssp             GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred             ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence            3567889999999999999775 99999999999873     699999975

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.52  E-value=1.4e-08  Score=85.17  Aligned_cols=48  Identities=40%  Similarity=0.806  Sum_probs=39.7

Q ss_pred             HHhccCCCcccccccccccccc--ccCCccchHHHhcCC-----CCCCCcccccc
Q psy7970         238 LQDIKEQTMCPVCLDRLKNMIF--LCGHGTCQMCGDRMS-----ECPICRKAVEK  285 (290)
Q Consensus       238 ~~~l~e~~~C~IC~~~~~~~v~--~CGH~fC~~C~~~~~-----~CP~CR~~i~~  285 (290)
                      .+.+++.+.|+||++.+.+|++  .|||.||..|+..|+     .||+||.++..
T Consensus        48 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           48 PRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS  102 (165)
T ss_dssp             --CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred             hhhCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence            3455677899999999999965  499999999999873     59999999854

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=98.46  E-value=6e-08  Score=69.22  Aligned_cols=46  Identities=33%  Similarity=0.737  Sum_probs=37.1

Q ss_pred             cCCCccccccccccc---ccc-ccCCccchHHHhcC----CCCCCCcccccccc
Q psy7970         242 KEQTMCPVCLDRLKN---MIF-LCGHGTCQMCGDRM----SECPICRKAVEKRI  287 (290)
Q Consensus       242 ~e~~~C~IC~~~~~~---~v~-~CGH~fC~~C~~~~----~~CP~CR~~i~~~~  287 (290)
                      ++...|+||++.+.+   +++ .|||.||..|+..|    ..||+||..+....
T Consensus        12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   65 (69)
T 2kiz_A           12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL   65 (69)
T ss_dssp             TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred             CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence            467899999998854   233 49999999999987    47999999986543

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.45  E-value=3.7e-08  Score=75.20  Aligned_cols=47  Identities=26%  Similarity=0.482  Sum_probs=39.2

Q ss_pred             hccCCCcccccccccccccc-c-cCCccchHHHhcCC----------CCCC--Cccc-cccc
Q psy7970         240 DIKEQTMCPVCLDRLKNMIF-L-CGHGTCQMCGDRMS----------ECPI--CRKA-VEKR  286 (290)
Q Consensus       240 ~l~e~~~C~IC~~~~~~~v~-~-CGH~fC~~C~~~~~----------~CP~--CR~~-i~~~  286 (290)
                      ...+++.||||++.+.+||+ . |||+||+.||..|+          .||+  |++. +...
T Consensus         3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~   64 (94)
T 2yu4_A            3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS   64 (94)
T ss_dssp             SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGG
T ss_pred             CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHh
Confidence            34678999999999999977 4 99999999999773          7999  9876 5443

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.44  E-value=3.7e-08  Score=82.85  Aligned_cols=47  Identities=26%  Similarity=0.699  Sum_probs=41.4

Q ss_pred             hccCCCccccccccccccccc-cCCccchHHHhcCC-----CCCCCccccccc
Q psy7970         240 DIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRMS-----ECPICRKAVEKR  286 (290)
Q Consensus       240 ~l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~~-----~CP~CR~~i~~~  286 (290)
                      .+++.+.|+||++.+.+|+.. |||+||..|+..|+     .||+||.++...
T Consensus        14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (170)
T 3hcs_A           14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (170)
T ss_dssp             CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence            456789999999999999775 99999999999873     899999998664

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.41  E-value=4.4e-08  Score=76.82  Aligned_cols=44  Identities=23%  Similarity=0.637  Sum_probs=35.9

Q ss_pred             CCCccccccccccccc------------------c-ccCCccchHHHhcCC---------CCCCCccccccc
Q psy7970         243 EQTMCPVCLDRLKNMI------------------F-LCGHGTCQMCGDRMS---------ECPICRKAVEKR  286 (290)
Q Consensus       243 e~~~C~IC~~~~~~~v------------------~-~CGH~fC~~C~~~~~---------~CP~CR~~i~~~  286 (290)
                      .+..|+||++.+.++.                  + .|||.||..|+..|.         .||+||..+..+
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence            3469999999997653                  3 499999999999874         699999988543

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=98.41  E-value=6.1e-08  Score=73.40  Aligned_cols=44  Identities=23%  Similarity=0.551  Sum_probs=36.9

Q ss_pred             cCCCccccccccccc---ccc-ccCCccchHHHhcC----CCCCCCcccccc
Q psy7970         242 KEQTMCPVCLDRLKN---MIF-LCGHGTCQMCGDRM----SECPICRKAVEK  285 (290)
Q Consensus       242 ~e~~~C~IC~~~~~~---~v~-~CGH~fC~~C~~~~----~~CP~CR~~i~~  285 (290)
                      +++..|+||++.+.+   ++. .|||.||..|+..|    ..||+||..+..
T Consensus        38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence            567899999998877   433 59999999999987    379999998864

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.41  E-value=5.9e-08  Score=70.55  Aligned_cols=44  Identities=34%  Similarity=0.727  Sum_probs=37.2

Q ss_pred             cCCCcccccccccccc---cc-ccCCccchHHHhcC----CCCCCCcccccc
Q psy7970         242 KEQTMCPVCLDRLKNM---IF-LCGHGTCQMCGDRM----SECPICRKAVEK  285 (290)
Q Consensus       242 ~e~~~C~IC~~~~~~~---v~-~CGH~fC~~C~~~~----~~CP~CR~~i~~  285 (290)
                      +++..|+||++.+.++   +. .|||.||..|+..|    ..||+||+.+..
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP   72 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence            4678999999998876   33 49999999999988    479999998864

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.39  E-value=2.3e-07  Score=66.67  Aligned_cols=49  Identities=31%  Similarity=0.743  Sum_probs=41.8

Q ss_pred             CCCCCCCccccccccCcceEeecCCCcccccchhhhh----ccCCCCCCcchhh
Q psy7970          73 EDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRV----KKCLICREPVEKR  122 (290)
Q Consensus        73 ~~~~~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~----~~Cp~Cr~~i~~~  122 (290)
                      ....+...|.||++...+.+++||||. +|..|....    ..||+||..+...
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~   62 (71)
T 2d8t_A           10 APSLTVPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPED   62 (71)
T ss_dssp             CSSSSCCBCSSSSSBCSSEEEETTTEE-EEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred             ccCCCCCCCccCCcccCCCEEccCCCH-HHHHHHHHHHHCCCcCcCcCchhCHh
Confidence            445666789999999999999999999 799998764    6899999998653

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.37  E-value=7.7e-08  Score=86.12  Aligned_cols=46  Identities=7%  Similarity=0.043  Sum_probs=40.0

Q ss_pred             cCCCccccccccccccccc-cCCccchHHHhcCC-----CCCCCcccccccc
Q psy7970         242 KEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRMS-----ECPICRKAVEKRI  287 (290)
Q Consensus       242 ~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~~-----~CP~CR~~i~~~~  287 (290)
                      .+.+.||||++.+.+||++ |||+||+.||..|+     .||+||.++....
T Consensus       206 ~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~  257 (281)
T 2c2l_A          206 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ  257 (281)
T ss_dssp             CSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred             CcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhc
Confidence            3578999999999999885 99999999999773     4999999997654

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.29  E-value=3.2e-07  Score=86.89  Aligned_cols=51  Identities=24%  Similarity=0.586  Sum_probs=42.1

Q ss_pred             HhccCCCccccccccccccccc-cCCccchHHHhcC-----CCCCCCcccccccccC
Q psy7970         239 QDIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRM-----SECPICRKAVEKRILL  289 (290)
Q Consensus       239 ~~l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~-----~~CP~CR~~i~~~~~~  289 (290)
                      +..+....|+||++.+.+|++. |||.||..|+..|     ..||+||+++.....+
T Consensus       327 e~~~~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i  383 (389)
T 2y1n_A          327 EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI  383 (389)
T ss_dssp             HTTTSSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEEC
T ss_pred             hhcCCCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCceeE
Confidence            3445568999999999999774 9999999999865     4799999999775543

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.25  E-value=2e-07  Score=79.48  Aligned_cols=49  Identities=10%  Similarity=0.099  Sum_probs=41.7

Q ss_pred             hccCCCccccccccccccccc-cCCccchHHHhcCC-----CCCCCccccccccc
Q psy7970         240 DIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRMS-----ECPICRKAVEKRIL  288 (290)
Q Consensus       240 ~l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~~-----~CP~CR~~i~~~~~  288 (290)
                      .+.+.+.||||++.+.+||++ |||+||+.||..|+     .||+||.++....+
T Consensus       102 ~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L  156 (179)
T 2f42_A          102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQL  156 (179)
T ss_dssp             CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred             CCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhC
Confidence            345679999999999999885 99999999999873     59999999876543

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.22  E-value=9.9e-07  Score=63.30  Aligned_cols=48  Identities=29%  Similarity=0.693  Sum_probs=40.9

Q ss_pred             CCCCCCCccccccccCcceEeecCCCcccccchhhhhc-------cCCCCCCcchh
Q psy7970          73 EDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVK-------KCLICREPVEK  121 (290)
Q Consensus        73 ~~~~~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~~-------~Cp~Cr~~i~~  121 (290)
                      .+..+...|.||++...+.+++||||. +|..|.....       .||+||+++..
T Consensus        15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           15 NKLQEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCCCCBCTTTCSBCSSEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred             HhCccCCEeccCCcccCCeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence            445667799999999999999999999 7999997653       79999998864

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.17  E-value=4.1e-07  Score=81.68  Aligned_cols=48  Identities=21%  Similarity=0.362  Sum_probs=41.1

Q ss_pred             hccCCCcccccccccccccc--ccCCccchHHHhcCC------CCCC--Ccccccccc
Q psy7970         240 DIKEQTMCPVCLDRLKNMIF--LCGHGTCQMCGDRMS------ECPI--CRKAVEKRI  287 (290)
Q Consensus       240 ~l~e~~~C~IC~~~~~~~v~--~CGH~fC~~C~~~~~------~CP~--CR~~i~~~~  287 (290)
                      ....++.||||++.+.+||+  .|||+||+.||..||      .||+  ||+.+....
T Consensus       177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~d  234 (267)
T 3htk_C          177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD  234 (267)
T ss_dssp             SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGG
T ss_pred             CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhh
Confidence            34678999999999999986  399999999999875      5999  999886544

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.16  E-value=8.1e-07  Score=62.82  Aligned_cols=49  Identities=31%  Similarity=0.634  Sum_probs=39.5

Q ss_pred             CCCCCCCCccccccccCcce-------EeecCCCcccccchhhhh----ccCCCCCCcchh
Q psy7970          72 TEDMVTLDECRICSDLKRDI-------LFQPCGHVACCSVCAPRV----KKCLICREPVEK  121 (290)
Q Consensus        72 ~~~~~~~~~C~iC~~~~~~~-------~~~PCgH~~~C~~Ca~~~----~~Cp~Cr~~i~~  121 (290)
                      .....+...|.||++...+.       +++||||. +|..|....    ..||+||+++..
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A            9 GLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             CCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCE-EEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             ccCCCCCCCCcccCccccccccccCCeEeCCCCCh-hcHHHHHHHHHcCCCCCCCCCccCc
Confidence            34556678999999987665       88999995 699999764    589999998864

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.16  E-value=5e-07  Score=64.49  Aligned_cols=50  Identities=32%  Similarity=0.762  Sum_probs=41.6

Q ss_pred             CCCCCCCccccccccCcceEeecCCCcccccchhhhh----ccCCCCCCcchhhcc
Q psy7970          73 EDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRV----KKCLICREPVEKRIK  124 (290)
Q Consensus        73 ~~~~~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~----~~Cp~Cr~~i~~~~~  124 (290)
                      .+..+...|.||++...+ +++||||. +|..|....    ..||+||.++.....
T Consensus        10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   63 (70)
T 2ecn_A           10 KQLTDEEECCICMDGRAD-LILPCAHS-FCQKCIDKWSDRHRNCPICRLQMTGANE   63 (70)
T ss_dssp             CCCCCCCCCSSSCCSCCS-EEETTTEE-ECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred             hcCCCCCCCeeCCcCccC-cccCCCCc-ccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence            345667899999999999 88999999 799999764    689999998876543

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.12  E-value=7.6e-07  Score=65.89  Aligned_cols=44  Identities=20%  Similarity=0.611  Sum_probs=34.8

Q ss_pred             CCCccccccccccc--------------c-ccc-cCCccchHHHhcCC----CCCCCccccccc
Q psy7970         243 EQTMCPVCLDRLKN--------------M-IFL-CGHGTCQMCGDRMS----ECPICRKAVEKR  286 (290)
Q Consensus       243 e~~~C~IC~~~~~~--------------~-v~~-CGH~fC~~C~~~~~----~CP~CR~~i~~~  286 (290)
                      ++..|+||++.+.+              + +++ |||.|+..|+.+|.    .||+||+++...
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~   77 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ   77 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence            45678898888865              2 334 99999999999873    699999988543

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=98.09  E-value=1.8e-06  Score=61.08  Aligned_cols=47  Identities=32%  Similarity=0.774  Sum_probs=39.5

Q ss_pred             CCCccccccccCcc-eEeecCCCcccccchhhhh----ccCCCCCCcchhhcc
Q psy7970          77 TLDECRICSDLKRD-ILFQPCGHVACCSVCAPRV----KKCLICREPVEKRIK  124 (290)
Q Consensus        77 ~~~~C~iC~~~~~~-~~~~PCgH~~~C~~Ca~~~----~~Cp~Cr~~i~~~~~  124 (290)
                      +...|.||++...+ ++++||||. +|..|....    ..||+||+++.....
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   55 (68)
T 1chc_A            4 VAERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVH   55 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEEC
T ss_pred             CCCCCeeCCccccCCcEecCCCCe-eHHHHHHHHHhCcCcCcCCChhhHhhhh
Confidence            45689999999988 689999999 799999753    689999999876544

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.08  E-value=3.2e-06  Score=62.10  Aligned_cols=48  Identities=27%  Similarity=0.610  Sum_probs=40.4

Q ss_pred             CCCCCCCccccccccCcceEeecCCCcccccchhhhh----ccCCCCCCcchh
Q psy7970          73 EDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRV----KKCLICREPVEK  121 (290)
Q Consensus        73 ~~~~~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~----~~Cp~Cr~~i~~  121 (290)
                      .+..+...|.||++...+.+++||||.. |..|....    ..||+||+++..
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~   61 (81)
T 2csy_A           10 EEEEIPFRCFICRQAFQNPVVTKCRHYF-CESCALEHFRATPRCYICDQPTGG   61 (81)
T ss_dssp             SCCCCCSBCSSSCSBCCSEEECTTSCEE-EHHHHHHHHHHCSBCSSSCCBCCS
T ss_pred             ccCCCCCCCcCCCchhcCeeEccCCCHh-HHHHHHHHHHCCCcCCCcCccccc
Confidence            3455567899999999999999999985 99999764    579999999863

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.00  E-value=4.6e-06  Score=56.33  Aligned_cols=44  Identities=25%  Similarity=0.634  Sum_probs=36.3

Q ss_pred             CCCCccccccccCcc----eEeecCCCcccccchhhhh----ccCCCCCCcch
Q psy7970          76 VTLDECRICSDLKRD----ILFQPCGHVACCSVCAPRV----KKCLICREPVE  120 (290)
Q Consensus        76 ~~~~~C~iC~~~~~~----~~~~PCgH~~~C~~Ca~~~----~~Cp~Cr~~i~  120 (290)
                      .+...|.||++...+    .+++||||. +|..|....    ..||+||.++.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            3 SGSSGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             SCCCSCTTTCCCCCTTTSCEEECTTSCE-EETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCCcCcccChhhcCCCcCeEecCCCCc-ccHHHHHHHHHcCCcCCCCCCcCC
Confidence            345789999998755    889999995 799999765    68999999875

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.99  E-value=7.6e-06  Score=59.94  Aligned_cols=48  Identities=27%  Similarity=0.614  Sum_probs=40.5

Q ss_pred             CCCCCCCccccccccCcceEeecCCCcccccchhhh----------hccCCCCCCcchh
Q psy7970          73 EDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPR----------VKKCLICREPVEK  121 (290)
Q Consensus        73 ~~~~~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~----------~~~Cp~Cr~~i~~  121 (290)
                      .+..+...|.||++...+.+.+||||. +|..|...          ...||+||+.+..
T Consensus        14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           14 VNVKEEVTCPICLELLTQPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQP   71 (85)
T ss_dssp             CCCCCCCCCTTTCSCCSSCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred             HHccCCCCCCCCCcccCCceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence            455667899999999999999999998 69999865          3589999998864

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=97.98  E-value=2.8e-06  Score=61.79  Aligned_cols=50  Identities=24%  Similarity=0.544  Sum_probs=41.1

Q ss_pred             CCCCCCCCCccccccccCcceEeecCCCcccccchhhh-----------hccCCCCCCcchh
Q psy7970          71 GTEDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPR-----------VKKCLICREPVEK  121 (290)
Q Consensus        71 ~~~~~~~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~-----------~~~Cp~Cr~~i~~  121 (290)
                      ...+..+...|.||++...+.+.+||||. +|..|..+           ...||+||+++..
T Consensus         5 ~~~~~~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A            5 SSGNVQEEVTCPICLELLTEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             SSCCCCCCCEETTTTEECSSCCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             hHhhcccCCCCcCCCcccCCeeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            33456677899999999999888999997 59999874           3579999998864

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.98  E-value=6.5e-06  Score=60.95  Aligned_cols=49  Identities=22%  Similarity=0.605  Sum_probs=40.3

Q ss_pred             CCCCCCCCccccccccCcc----eEeecCCCcccccchhhhh-------ccCCCCCCcchh
Q psy7970          72 TEDMVTLDECRICSDLKRD----ILFQPCGHVACCSVCAPRV-------KKCLICREPVEK  121 (290)
Q Consensus        72 ~~~~~~~~~C~iC~~~~~~----~~~~PCgH~~~C~~Ca~~~-------~~Cp~Cr~~i~~  121 (290)
                      .....+..+|.||++...+    .+++||||. +|..|....       ..||+||+.+..
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   68 (88)
T 2ct2_A            9 LDALREVLECPICMESFTEEQLRPKLLHCGHT-ICRQCLEKLLASSINGVRCPFCSKITRI   68 (88)
T ss_dssp             CCCCCSCCBCTTTCCBCCTTSSCEEECSSSCE-EEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred             hhhccCCCCCccCCccccccCCCeEECCCCCh-hhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence            3455667899999999888    889999997 599999764       589999998754

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.98  E-value=8.4e-06  Score=59.71  Aligned_cols=48  Identities=27%  Similarity=0.614  Sum_probs=40.3

Q ss_pred             CCCCCCCccccccccCcceEeecCCCcccccchhhh----------hccCCCCCCcchh
Q psy7970          73 EDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPR----------VKKCLICREPVEK  121 (290)
Q Consensus        73 ~~~~~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~----------~~~Cp~Cr~~i~~  121 (290)
                      .+..+...|.||++...+.+++||||. +|..|...          ...||+||..+..
T Consensus        14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           14 EMIKEEVTCPICLELLKEPVSADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             CCCCTTTSCTTTCSCCSSCEECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred             HhCccCCCCcCCChhhCcceeCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence            445667799999999999999999997 69999865          4579999998864

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=97.98  E-value=3.3e-06  Score=62.22  Aligned_cols=51  Identities=31%  Similarity=0.670  Sum_probs=40.5

Q ss_pred             CCCCCCCccccccccC--cceEeec--CCCcccccchhhhh-----ccCCCCCCcchhhcc
Q psy7970          73 EDMVTLDECRICSDLK--RDILFQP--CGHVACCSVCAPRV-----KKCLICREPVEKRIK  124 (290)
Q Consensus        73 ~~~~~~~~C~iC~~~~--~~~~~~P--CgH~~~C~~Ca~~~-----~~Cp~Cr~~i~~~~~  124 (290)
                      .+..+...|.||++..  .+.++.|  |||. +|..|..++     ..||+||+++.....
T Consensus         6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A            6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPEDPA   65 (78)
T ss_dssp             CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred             cccccCCcCCccCccCccccccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence            3456667899999976  4567777  9998 699999876     389999999976543

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=97.96  E-value=6.6e-06  Score=58.37  Aligned_cols=51  Identities=33%  Similarity=0.695  Sum_probs=39.5

Q ss_pred             CCCCCCCccccccccC---cceEeecCCCcccccchhhhh----ccCCCCCCcchhhcc
Q psy7970          73 EDMVTLDECRICSDLK---RDILFQPCGHVACCSVCAPRV----KKCLICREPVEKRIK  124 (290)
Q Consensus        73 ~~~~~~~~C~iC~~~~---~~~~~~PCgH~~~C~~Ca~~~----~~Cp~Cr~~i~~~~~  124 (290)
                      .+......|.||++..   ..++.+||||. +|..|....    ..||+||..+...+.
T Consensus         9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   66 (69)
T 2kiz_A            9 TEEDTEEKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIEAQLP   66 (69)
T ss_dssp             CSTTCCCSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred             CcCCCCCCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHcCCCCcCcCccccCcCC
Confidence            3445567899997654   56788999999 699998753    689999999876543

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.94  E-value=1.1e-05  Score=58.69  Aligned_cols=49  Identities=22%  Similarity=0.554  Sum_probs=38.0

Q ss_pred             CCCCCCCccccccccC---cceEeecCCCcccccchhhhh----ccCCCCCCcchhh
Q psy7970          73 EDMVTLDECRICSDLK---RDILFQPCGHVACCSVCAPRV----KKCLICREPVEKR  122 (290)
Q Consensus        73 ~~~~~~~~C~iC~~~~---~~~~~~PCgH~~~C~~Ca~~~----~~Cp~Cr~~i~~~  122 (290)
                      ....+..+|.||++..   ..+..+||||. +|..|....    ..||+||..+...
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~   65 (78)
T 2ect_A           10 EHVGSGLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQHDSCPVCRKSLTGQ   65 (78)
T ss_dssp             TTSSSSCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred             ccCCCCCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHcCCcCcCcCCccCCc
Confidence            4455667999997654   45577899997 799998753    6899999998754

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.91  E-value=9.1e-06  Score=58.31  Aligned_cols=49  Identities=24%  Similarity=0.516  Sum_probs=40.2

Q ss_pred             CCCCCCCccccccccCcceEee-cCCCcccccchhhhh----ccCCCCCCcchhh
Q psy7970          73 EDMVTLDECRICSDLKRDILFQ-PCGHVACCSVCAPRV----KKCLICREPVEKR  122 (290)
Q Consensus        73 ~~~~~~~~C~iC~~~~~~~~~~-PCgH~~~C~~Ca~~~----~~Cp~Cr~~i~~~  122 (290)
                      .+..+...|.||++...+.+.+ ||||.. |..|....    ..||+||.++...
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (72)
T 2djb_A           10 SELTPYILCSICKGYLIDATTITECLHTF-CKSCIVRHFYYSNRCPKCNIVVHQT   63 (72)
T ss_dssp             CCCCGGGSCTTTSSCCSSCEECSSSCCEE-CHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred             hhcCCCCCCCCCChHHHCcCEECCCCCHH-HHHHHHHHHHcCCcCCCcCcccCcc
Confidence            4556677899999999987776 999985 99998653    6899999998754

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.88  E-value=6e-06  Score=56.60  Aligned_cols=45  Identities=27%  Similarity=0.589  Sum_probs=38.0

Q ss_pred             CCCCccccccccCcceEeecCCCcccccchhhhh-ccCCCCCCcchh
Q psy7970          76 VTLDECRICSDLKRDILFQPCGHVACCSVCAPRV-KKCLICREPVEK  121 (290)
Q Consensus        76 ~~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~-~~Cp~Cr~~i~~  121 (290)
                      .+...|.||++...+.+.+||||. +|..|.... ..||+||+.+..
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~CP~Cr~~~~~   49 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHT-LCSGCLEASGMQCPICQAPWPL   49 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCC-SBTTTCSSSSSSCSSCCSSSSC
T ss_pred             ccCCCceEeCCccCCeEEcCCCCc-ccHHHHccCCCCCCcCCcEeec
Confidence            455679999999999999999997 589998654 689999998764

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.88  E-value=6.7e-06  Score=57.93  Aligned_cols=48  Identities=25%  Similarity=0.571  Sum_probs=40.2

Q ss_pred             CCCCCCCccccccccCcceEeecCCCcccccchhhhh-----ccCCCCCCcchh
Q psy7970          73 EDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRV-----KKCLICREPVEK  121 (290)
Q Consensus        73 ~~~~~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~-----~~Cp~Cr~~i~~  121 (290)
                      ....+...|.||++...+.+.+||||. +|..|....     ..||+||+++..
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           10 KTVEDKYKCEKCHLVLCSPKQTECGHR-FCESCMAALLSSSSPKCTACQESIVK   62 (66)
T ss_dssp             CSCCCCEECTTTCCEESSCCCCSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred             hcCCcCCCCCCCChHhcCeeECCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence            345666789999999999888999999 599998754     479999999865

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=97.85  E-value=9.4e-06  Score=65.85  Aligned_cols=43  Identities=26%  Similarity=0.569  Sum_probs=37.1

Q ss_pred             cccccccccCCceEEeCCCCeecchhhHhc----CCCCCCCCcccccc
Q psy7970         126 EECMVCSLKKASVLFKPCYHMVACESCASL----MKKCVQCRTQIDHM  169 (290)
Q Consensus       126 ~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~----~~~Cp~Cr~~i~~~  169 (290)
                      ..|.||++...+.+++||||. +|..|...    ...||.||.+|...
T Consensus        54 ~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~  100 (138)
T 4ayc_A           54 LQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDIKSK  100 (138)
T ss_dssp             SBCTTTCSBCSSEEEETTSCE-EEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred             CCCcccCcccCCceECCCCCC-ccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence            369999999999999999997 99999964    46899999998654

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.85  E-value=3e-06  Score=64.21  Aligned_cols=41  Identities=24%  Similarity=0.590  Sum_probs=33.8

Q ss_pred             cCCCcccccccccccccc----ccCCccchHHHhcC------------CCCCC--Cccc
Q psy7970         242 KEQTMCPVCLDRLKNMIF----LCGHGTCQMCGDRM------------SECPI--CRKA  282 (290)
Q Consensus       242 ~e~~~C~IC~~~~~~~v~----~CGH~fC~~C~~~~------------~~CP~--CR~~  282 (290)
                      .+...|+||++.+.++.+    .|||.||..|+..+            ..||.  |+..
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            356899999999988833    39999999999854            25999  9988

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=97.83  E-value=1.4e-05  Score=53.90  Aligned_cols=44  Identities=32%  Similarity=0.594  Sum_probs=35.6

Q ss_pred             CCCCccccccccCcc---eEeec-CCCcccccchhhhh----ccCCCCCCcch
Q psy7970          76 VTLDECRICSDLKRD---ILFQP-CGHVACCSVCAPRV----KKCLICREPVE  120 (290)
Q Consensus        76 ~~~~~C~iC~~~~~~---~~~~P-CgH~~~C~~Ca~~~----~~Cp~Cr~~i~  120 (290)
                      .+..+|.||++...+   .+.+| |||. +|..|....    ..||+||.++.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHcCCcCcCCCCEeE
Confidence            456789999998776   77777 9997 699998753    68999998764

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.80  E-value=9.9e-06  Score=58.53  Aligned_cols=47  Identities=21%  Similarity=0.477  Sum_probs=36.8

Q ss_pred             CCCCCCccccccccCcc---eEeecCCCcccccchhhhh----ccCCCCCCcchh
Q psy7970          74 DMVTLDECRICSDLKRD---ILFQPCGHVACCSVCAPRV----KKCLICREPVEK  121 (290)
Q Consensus        74 ~~~~~~~C~iC~~~~~~---~~~~PCgH~~~C~~Ca~~~----~~Cp~Cr~~i~~  121 (290)
                      ...+..+|.||++...+   ++.+||||. +|..|....    ..||+||+++..
T Consensus        19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           19 HQSEQTLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKANRTCPICRADSGP   72 (75)
T ss_dssp             CSSSCCEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred             ccCCCCCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHcCCcCcCcCCcCCC
Confidence            34566789999966443   588899998 799998754    589999998864

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.80  E-value=1.1e-05  Score=57.97  Aligned_cols=52  Identities=21%  Similarity=0.506  Sum_probs=39.8

Q ss_pred             CCCCCCCCccccccccC---cceEeecCCCcccccchhhhh----ccCCCCCCcchhhcc
Q psy7970          72 TEDMVTLDECRICSDLK---RDILFQPCGHVACCSVCAPRV----KKCLICREPVEKRIK  124 (290)
Q Consensus        72 ~~~~~~~~~C~iC~~~~---~~~~~~PCgH~~~C~~Ca~~~----~~Cp~Cr~~i~~~~~  124 (290)
                      ..+......|.||++..   ..+..+||||. +|..|....    ..||+||.++.....
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~   67 (74)
T 2ep4_A            9 VKELNLHELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEVRKVCPLCNMPVLQLAQ   67 (74)
T ss_dssp             CCCCCCSCBCSSSCCBCCSSSCEEEETTTEE-EEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred             cccCCCCCCCcCCCcccCCCCcEEEcCCCCE-ecHHHHHHHHHcCCcCCCcCcccccccc
Confidence            34556678999999885   34566699998 789998653    589999999876543

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=97.79  E-value=5.5e-06  Score=58.90  Aligned_cols=46  Identities=33%  Similarity=0.705  Sum_probs=37.6

Q ss_pred             CCCCCccccccccCcce-------EeecCCCcccccchhhhh----ccCCCCCCcchh
Q psy7970          75 MVTLDECRICSDLKRDI-------LFQPCGHVACCSVCAPRV----KKCLICREPVEK  121 (290)
Q Consensus        75 ~~~~~~C~iC~~~~~~~-------~~~PCgH~~~C~~Ca~~~----~~Cp~Cr~~i~~  121 (290)
                      ..+...|.||++...+.       +++||||. +|..|....    ..||+||.++..
T Consensus         7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~   63 (71)
T 3ng2_A            7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH   63 (71)
T ss_dssp             CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred             CCCCCCCcccChhhhccccccCCeEeCCCCCh-HhHHHHHHHHHcCCCCCCCCCccCh
Confidence            34567899999987664       88999997 699998654    699999998864

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.74  E-value=2.3e-05  Score=53.36  Aligned_cols=42  Identities=26%  Similarity=0.773  Sum_probs=34.7

Q ss_pred             CCCCCCCccccccccCcceEeecCCCcccccchhhhh-------ccCCCC
Q psy7970          73 EDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRV-------KKCLIC  115 (290)
Q Consensus        73 ~~~~~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~-------~~Cp~C  115 (290)
                      ....+...|.||++...+.+.+||||. +|..|....       ..||+|
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           10 ENLQVEASCSVCLEYLKEPVIIECGHN-FCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             SCSCCCCBCSSSCCBCSSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred             hccccCCCCccCCcccCccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence            445667799999999999999999999 699998754       467776

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=97.72  E-value=3.3e-05  Score=55.75  Aligned_cols=47  Identities=26%  Similarity=0.641  Sum_probs=39.3

Q ss_pred             CCCCCCCccccccccCcceEeec-CCCcccccchhhhh------ccCCCCCCcch
Q psy7970          73 EDMVTLDECRICSDLKRDILFQP-CGHVACCSVCAPRV------KKCLICREPVE  120 (290)
Q Consensus        73 ~~~~~~~~C~iC~~~~~~~~~~P-CgH~~~C~~Ca~~~------~~Cp~Cr~~i~  120 (290)
                      .+..+...|.||++...+.+.+| |||. +|..|....      ..||+||+++.
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~   63 (74)
T 2yur_A           10 DPIPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDV   63 (74)
T ss_dssp             CCSCGGGSCSSSCCCCTTCEECSSSCCE-ECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred             ccCCCCCCCcCCChHHhCCeEcCCCCCH-HHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence            45566679999999999999999 9997 599998654      37999999754

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=97.70  E-value=1.2e-05  Score=62.69  Aligned_cols=42  Identities=21%  Similarity=0.600  Sum_probs=34.0

Q ss_pred             CCCcccccccccccc------------------cc-ccCCccchHHHhcC----CCCCCCccccc
Q psy7970         243 EQTMCPVCLDRLKNM------------------IF-LCGHGTCQMCGDRM----SECPICRKAVE  284 (290)
Q Consensus       243 e~~~C~IC~~~~~~~------------------v~-~CGH~fC~~C~~~~----~~CP~CR~~i~  284 (290)
                      ++..|+||++.+.++                  ++ .|||.|+..|+..|    ..||+||+.+.
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence            346799999988765                  22 39999999999987    37999999864

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=97.66  E-value=1.5e-05  Score=55.20  Aligned_cols=41  Identities=27%  Similarity=0.724  Sum_probs=31.3

Q ss_pred             ccccccccCCc-------eEEeCCCCeecchhhHhc----CCCCCCCCccccc
Q psy7970         127 ECMVCSLKKAS-------VLFKPCYHMVACESCASL----MKKCVQCRTQIDH  168 (290)
Q Consensus       127 ~C~~C~~~~~~-------~~~~PCgH~~~C~~Ca~~----~~~Cp~Cr~~i~~  168 (290)
                      .|.||++...+       ++.+||||. +|..|..+    ...||.||.++..
T Consensus         5 ~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~   56 (64)
T 2xeu_A            5 SCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH   56 (64)
T ss_dssp             BCTTTCCBHHHHHHTTCCEEEETTSCE-EEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred             CCCccChhhhCccccCCCEEeCCCCCc-hhHHHHHHHHHcCCCCCCCCccCCc
Confidence            45566554333       488999999 99999954    4699999999875

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=97.62  E-value=2.7e-05  Score=58.58  Aligned_cols=46  Identities=22%  Similarity=0.357  Sum_probs=36.8

Q ss_pred             CCCCCccccccccCcc---eEeecCCCcccccchhhhh----ccCCCCCCcchh
Q psy7970          75 MVTLDECRICSDLKRD---ILFQPCGHVACCSVCAPRV----KKCLICREPVEK  121 (290)
Q Consensus        75 ~~~~~~C~iC~~~~~~---~~~~PCgH~~~C~~Ca~~~----~~Cp~Cr~~i~~  121 (290)
                      ..+...|.||++....   ++.+||||. +|..|....    ..||+||..+..
T Consensus        37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           37 VGQEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             SSSCSEETTTTEECCTTCEEEEETTTEE-EEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             cCCCCCCcccChhhcCCCcEEecCCCCh-HHHHHHHHHHHcCCcCcCcCccCCC
Confidence            3456789999987666   888999996 689998653    689999998865

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.62  E-value=1.7e-05  Score=55.69  Aligned_cols=42  Identities=31%  Similarity=0.769  Sum_probs=31.3

Q ss_pred             cccccccc-cC----CceEEeCCCCeecchhhHhcC-----CCCCCCCccccc
Q psy7970         126 EECMVCSL-KK----ASVLFKPCYHMVACESCASLM-----KKCVQCRTQIDH  168 (290)
Q Consensus       126 ~~C~~C~~-~~----~~~~~~PCgH~~~C~~Ca~~~-----~~Cp~Cr~~i~~  168 (290)
                      +.|.||++ ..    ..++++||||. +|..|..+.     ..||.||.++..
T Consensus         4 ~~C~IC~~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   55 (65)
T 1g25_A            4 QGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             TCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CcCCcCCCCccCCCccCeecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCcccc
Confidence            45777777 22    22267899999 999999654     579999999765

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=97.58  E-value=3.9e-05  Score=57.40  Aligned_cols=47  Identities=26%  Similarity=0.641  Sum_probs=39.2

Q ss_pred             CCCCCCCccccccccCcceEeec-CCCcccccchhhhh------ccCCCCCCcch
Q psy7970          73 EDMVTLDECRICSDLKRDILFQP-CGHVACCSVCAPRV------KKCLICREPVE  120 (290)
Q Consensus        73 ~~~~~~~~C~iC~~~~~~~~~~P-CgH~~~C~~Ca~~~------~~Cp~Cr~~i~  120 (290)
                      .+..+...|.||++...+-+.+| |||. +|..|....      ..||+||.++.
T Consensus         8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A            8 DPIPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             CCCCTTTEETTTTEECSSCEECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             ccCCcCCCCCCCChhhcCceECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            45566789999999999999999 9999 589998654      48999999863

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.56  E-value=6.9e-05  Score=52.03  Aligned_cols=42  Identities=29%  Similarity=0.695  Sum_probs=34.9

Q ss_pred             CCCCCCCccccccccCcceEeecCCCcccccchhhhh-------ccCCCC
Q psy7970          73 EDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRV-------KKCLIC  115 (290)
Q Consensus        73 ~~~~~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~-------~~Cp~C  115 (290)
                      ....+...|.||++...+.+.+||||. +|..|..+.       .+||+|
T Consensus        15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           15 NKLQEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCCBCTTTCSBCSSCEECTTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred             HhCccCCCCCcCCchhCCeEEeCCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence            455667899999999999999999999 699998754       268877

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=97.52  E-value=5.3e-05  Score=58.56  Aligned_cols=46  Identities=22%  Similarity=0.449  Sum_probs=38.5

Q ss_pred             ccccccccccccCCceEEe-CCCCeecchhhHhcC----CCCCCCCcccccc
Q psy7970         123 IKIEECMVCSLKKASVLFK-PCYHMVACESCASLM----KKCVQCRTQIDHM  169 (290)
Q Consensus       123 ~~i~~C~~C~~~~~~~~~~-PCgH~~~C~~Ca~~~----~~Cp~Cr~~i~~~  169 (290)
                      .....|.+|++...+.+.+ ||||. +|..|....    ..||.||..+...
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           13 NPHLMCVLCGGYFIDATTIIECLHS-FCKTCIVRYLETSKYCPICDVQVHKT   63 (108)
T ss_dssp             GGGTBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred             CCcCCCccCChHHhCcCEeCCCCCh-hhHHHHHHHHHhCCcCcCCCcccccc
Confidence            3456899999998888887 99999 999999643    6899999997653

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=97.52  E-value=5.9e-05  Score=59.77  Aligned_cols=43  Identities=21%  Similarity=0.566  Sum_probs=36.6

Q ss_pred             ccccccccccCCceEEeCCCCeecchhhHhc-----CCCCCCCCccccc
Q psy7970         125 IEECMVCSLKKASVLFKPCYHMVACESCASL-----MKKCVQCRTQIDH  168 (290)
Q Consensus       125 i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~-----~~~Cp~Cr~~i~~  168 (290)
                      ...|.||++...+.+.+||||. +|..|..+     ...||.||.++..
T Consensus        52 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           52 TFQCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             CCCCCcCChHHcCcEEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            3579999998889999999999 99999953     3489999999865

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=97.51  E-value=5.3e-05  Score=57.97  Aligned_cols=43  Identities=23%  Similarity=0.646  Sum_probs=36.9

Q ss_pred             ccccccccccCCceEE-eCCCCeecchhhHhcC-----CCCCCCCccccc
Q psy7970         125 IEECMVCSLKKASVLF-KPCYHMVACESCASLM-----KKCVQCRTQIDH  168 (290)
Q Consensus       125 i~~C~~C~~~~~~~~~-~PCgH~~~C~~Ca~~~-----~~Cp~Cr~~i~~  168 (290)
                      ...|.||++...+.+. +||||. +|..|..+.     ..||.||.++..
T Consensus        22 ~~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (100)
T 3lrq_A           22 VFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL   70 (100)
T ss_dssp             HTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCCccCCccccCccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence            4689999999999999 999999 999999642     589999999754

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=97.50  E-value=5.4e-05  Score=71.66  Aligned_cols=46  Identities=30%  Similarity=0.775  Sum_probs=40.4

Q ss_pred             cccccccccCCceEEeCCCCeecchhhHh-----cCCCCCCCCcccccccce
Q psy7970         126 EECMVCSLKKASVLFKPCYHMVACESCAS-----LMKKCVQCRTQIDHMHPM  172 (290)
Q Consensus       126 ~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~-----~~~~Cp~Cr~~i~~~~~~  172 (290)
                      ..|.||++...+++++||||. .|..|..     ....||.||.++.....+
T Consensus       333 ~~C~ICle~~~~pv~lpCGH~-FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i  383 (389)
T 2y1n_A          333 QLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPI  383 (389)
T ss_dssp             SBCTTTSSSBCCEEEETTCCE-ECHHHHHHHHHHTCSBCTTTCCBCCEEEEC
T ss_pred             CCCCccCcCCCCeEEeCCCCh-hhHHHHHHHHhcCCCCCCCCCCccCCceeE
Confidence            589999999999999999999 6999995     457999999999876544

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=97.49  E-value=6e-05  Score=58.89  Aligned_cols=43  Identities=23%  Similarity=0.551  Sum_probs=36.8

Q ss_pred             ccccccccccCCceEEeCCCCeecchhhHhcC-----CCCCCCCccccc
Q psy7970         125 IEECMVCSLKKASVLFKPCYHMVACESCASLM-----KKCVQCRTQIDH  168 (290)
Q Consensus       125 i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~~-----~~Cp~Cr~~i~~  168 (290)
                      ...|.||++...+.+.+||||. +|..|..+.     ..||.||..+..
T Consensus        15 ~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           15 ECQCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHBCTTTCSBCSSCEECTTSCE-ECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCccCCcccCceeEcCCCCH-HhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            3579999998888999999999 999999653     489999999865

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=97.43  E-value=3.7e-05  Score=53.86  Aligned_cols=46  Identities=7%  Similarity=0.096  Sum_probs=39.4

Q ss_pred             CCccccccccccccccc--cCCccchHHHhcCC----CCCCCcccccccccC
Q psy7970         244 QTMCPVCLDRLKNMIFL--CGHGTCQMCGDRMS----ECPICRKAVEKRILL  289 (290)
Q Consensus       244 ~~~C~IC~~~~~~~v~~--CGH~fC~~C~~~~~----~CP~CR~~i~~~~~~  289 (290)
                      .+.|||+++.+.|||+.  +||+|++.+|.+|.    .||+.++++....++
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Li   54 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIV   54 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCE
T ss_pred             eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcE
Confidence            47899999999999764  99999999999883    799999999776543

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.42  E-value=4.5e-05  Score=59.00  Aligned_cols=43  Identities=26%  Similarity=0.620  Sum_probs=35.8

Q ss_pred             ccccccccccCCceEEeCCCCeecchhhHhcC-------CCCCCCCccccc
Q psy7970         125 IEECMVCSLKKASVLFKPCYHMVACESCASLM-------KKCVQCRTQIDH  168 (290)
Q Consensus       125 i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~~-------~~Cp~Cr~~i~~  168 (290)
                      ...|.||++...+.+.+||||. +|..|..+.       ..||.||.++..
T Consensus        21 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   70 (112)
T 1jm7_A           21 ILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK   70 (112)
T ss_dssp             HTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred             CCCCcccChhhcCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence            4589999988888888999998 999999532       379999998754

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=97.39  E-value=0.00012  Score=55.57  Aligned_cols=43  Identities=19%  Similarity=0.492  Sum_probs=36.0

Q ss_pred             ccccccccccCCceEEe-CCCCeecchhhHhc----CCCCCCCCccccc
Q psy7970         125 IEECMVCSLKKASVLFK-PCYHMVACESCASL----MKKCVQCRTQIDH  168 (290)
Q Consensus       125 i~~C~~C~~~~~~~~~~-PCgH~~~C~~Ca~~----~~~Cp~Cr~~i~~  168 (290)
                      ...|.||++...+.+.+ ||||. +|..|..+    ...||.||.++..
T Consensus        22 ~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           22 LLRCGICFEYFNIAMIIPQCSHN-YCSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             HTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             CCCcccCChhhCCcCEECCCCCH-hhHHHHHHHHHCCCCCCCCCCcCCh
Confidence            46899998888888887 99999 99999954    3589999998764

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=97.33  E-value=0.00014  Score=52.66  Aligned_cols=43  Identities=12%  Similarity=0.079  Sum_probs=36.6

Q ss_pred             ccccccccccCCceEEeCCCCeecchhhHhc-----CCCCCCCCccccc
Q psy7970         125 IEECMVCSLKKASVLFKPCYHMVACESCASL-----MKKCVQCRTQIDH  168 (290)
Q Consensus       125 i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~-----~~~Cp~Cr~~i~~  168 (290)
                      ...|.+|++...+.+.+||||. +|..|..+     ...||.||.++..
T Consensus         8 ~~~C~IC~~~~~~Pv~~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~   55 (78)
T 1t1h_A            8 YFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             SSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             cCCCCCccccccCCEEcCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence            4689999998889999999999 99999953     4579999998754

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=97.31  E-value=3.6e-05  Score=61.07  Aligned_cols=40  Identities=23%  Similarity=0.623  Sum_probs=0.0

Q ss_pred             Ccccccccccccc-----------------cc--ccCCccchHHHhcCC----CCCCCccccc
Q psy7970         245 TMCPVCLDRLKNM-----------------IF--LCGHGTCQMCGDRMS----ECPICRKAVE  284 (290)
Q Consensus       245 ~~C~IC~~~~~~~-----------------v~--~CGH~fC~~C~~~~~----~CP~CR~~i~  284 (290)
                      ..|+||++.+.++                 ++  .|||.|+..|+..|.    .||+||+.+.
T Consensus        49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence            5799999988763                 22  499999999999983    7999999864

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.31  E-value=9.4e-05  Score=58.09  Aligned_cols=42  Identities=24%  Similarity=0.470  Sum_probs=36.3

Q ss_pred             ccccccccccCCceEEe-CCCCeecchhhHhcC--CCCCCCCcccc
Q psy7970         125 IEECMVCSLKKASVLFK-PCYHMVACESCASLM--KKCVQCRTQID  167 (290)
Q Consensus       125 i~~C~~C~~~~~~~~~~-PCgH~~~C~~Ca~~~--~~Cp~Cr~~i~  167 (290)
                      ...|.||++...+.+++ ||||. +|..|..+.  ..||.||.++.
T Consensus        22 ~~~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~~~CP~Cr~~~~   66 (117)
T 1jm7_B           22 LLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCIGTGCPVCYTPAW   66 (117)
T ss_dssp             TTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTTTBCSSSCCBCS
T ss_pred             CCCCCCCChHhhCccEeCCCCCH-HHHHHHHHHhcCCCcCCCCcCc
Confidence            46888998888888888 99999 999999766  57999999863

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=97.29  E-value=0.00016  Score=59.58  Aligned_cols=44  Identities=20%  Similarity=0.542  Sum_probs=37.2

Q ss_pred             ccccccccccCCceEEeCCCCeecchhhHhcC-----CCCCCCCcccccc
Q psy7970         125 IEECMVCSLKKASVLFKPCYHMVACESCASLM-----KKCVQCRTQIDHM  169 (290)
Q Consensus       125 i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~~-----~~Cp~Cr~~i~~~  169 (290)
                      ...|.||++...+.+.+||||. +|..|..+.     ..||.||.++...
T Consensus        78 ~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           78 SFMCVCCQELVYQPVTTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             CCEeecCChhhcCCEEcCCCCc-hhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            4689999999999999999998 999999643     3799999987653

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=97.26  E-value=0.00017  Score=56.72  Aligned_cols=43  Identities=23%  Similarity=0.484  Sum_probs=37.0

Q ss_pred             ccccccccccCCceEEeCCCCeecchhhHhcC-----CCCCCCCccccc
Q psy7970         125 IEECMVCSLKKASVLFKPCYHMVACESCASLM-----KKCVQCRTQIDH  168 (290)
Q Consensus       125 i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~~-----~~Cp~Cr~~i~~  168 (290)
                      ...|.+|++...+.+.+||||. +|..|....     ..||.||.++..
T Consensus        18 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (118)
T 3hct_A           18 KYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE   65 (118)
T ss_dssp             GGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCcCChhhcCeEECCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence            4689999999889999999999 999999542     499999998765

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=97.15  E-value=0.00025  Score=58.90  Aligned_cols=43  Identities=23%  Similarity=0.542  Sum_probs=35.2

Q ss_pred             ccccccccccCCceEEe-CCCCeecchhhHhc-----CCCCCCCCccccc
Q psy7970         125 IEECMVCSLKKASVLFK-PCYHMVACESCASL-----MKKCVQCRTQIDH  168 (290)
Q Consensus       125 i~~C~~C~~~~~~~~~~-PCgH~~~C~~Ca~~-----~~~Cp~Cr~~i~~  168 (290)
                      ...|.||++...+.+.+ ||||. +|..|..+     ...||.||.++..
T Consensus        54 ~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           54 ELMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLVS  102 (165)
T ss_dssp             HHBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred             CCCCcccChHhhCcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence            35788888888888877 99998 99999954     4579999999854

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=97.14  E-value=0.00031  Score=54.84  Aligned_cols=43  Identities=23%  Similarity=0.455  Sum_probs=37.0

Q ss_pred             ccccccccccCCceEEeCCCCeecchhhHhc-----CCCCCCCCccccc
Q psy7970         125 IEECMVCSLKKASVLFKPCYHMVACESCASL-----MKKCVQCRTQIDH  168 (290)
Q Consensus       125 i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~-----~~~Cp~Cr~~i~~  168 (290)
                      ...|.||++...+.+.+||||. +|..|..+     ...||.||.++..
T Consensus        23 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (116)
T 1rmd_A           23 SISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP   70 (116)
T ss_dssp             HTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCCCCCCcHhcCcEEcCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence            4689999999999999999999 99999953     4589999998765

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.08  E-value=0.00036  Score=51.22  Aligned_cols=41  Identities=24%  Similarity=0.586  Sum_probs=27.8

Q ss_pred             cccccccc---CCceEEe-CCCCeecchhhHhc----CCCCCCCCccccc
Q psy7970         127 ECMVCSLK---KASVLFK-PCYHMVACESCASL----MKKCVQCRTQIDH  168 (290)
Q Consensus       127 ~C~~C~~~---~~~~~~~-PCgH~~~C~~Ca~~----~~~Cp~Cr~~i~~  168 (290)
                      .|.+|++.   ...++.+ +|||. ++..|..+    -..||+||.++..
T Consensus        28 ~C~iC~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~   76 (81)
T 2ecl_A           28 ACLRCQAENKQEDCVVVWGECNHS-FHNCCMSLWVKQNNRCPLCQQDWVV   76 (81)
T ss_dssp             CCTTHHHHTCTTTCCEEEETTSCE-EEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred             cCcccccccCCCceEEEeCCCCCc-cChHHHHHHHHhCCCCCCcCCCcch
Confidence            35555442   2223444 59999 99999963    4689999988643

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=96.85  E-value=0.0003  Score=54.56  Aligned_cols=32  Identities=19%  Similarity=0.309  Sum_probs=25.3

Q ss_pred             ceEEeCCCCeecchhhHhc---------CCCCCCCCcccccc
Q psy7970         137 SVLFKPCYHMVACESCASL---------MKKCVQCRTQIDHM  169 (290)
Q Consensus       137 ~~~~~PCgH~~~C~~Ca~~---------~~~Cp~Cr~~i~~~  169 (290)
                      .+.++||||. +|..|...         -..||.||..+...
T Consensus        55 ~~~~~~C~H~-Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T 1v87_A           55 VGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             CEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             ceecCCCCCc-ccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence            3458899998 99999853         24899999887654

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.83  E-value=0.00053  Score=50.54  Aligned_cols=44  Identities=20%  Similarity=0.464  Sum_probs=34.8

Q ss_pred             CCCcccccccccc--cccc-ccC-----CccchHHHhcC------CCCCCCccccccc
Q psy7970         243 EQTMCPVCLDRLK--NMIF-LCG-----HGTCQMCGDRM------SECPICRKAVEKR  286 (290)
Q Consensus       243 e~~~C~IC~~~~~--~~v~-~CG-----H~fC~~C~~~~------~~CP~CR~~i~~~  286 (290)
                      ++..|.||++.+.  ++++ +|.     |.|-..|+.+|      ..||+||..+.-.
T Consensus        14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~   71 (80)
T 2d8s_A           14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME   71 (80)
T ss_dssp             TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred             CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence            5678999998764  3444 485     99999999998      3799999998543

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=96.72  E-value=0.00094  Score=55.56  Aligned_cols=44  Identities=23%  Similarity=0.474  Sum_probs=37.8

Q ss_pred             cccccccccccCCceEEeCCCCeecchhhHhcC-----CCCCCCCccccc
Q psy7970         124 KIEECMVCSLKKASVLFKPCYHMVACESCASLM-----KKCVQCRTQIDH  168 (290)
Q Consensus       124 ~i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~~-----~~Cp~Cr~~i~~  168 (290)
                      ..+.|.||++...+.+.+||||. +|..|..+.     ..||.||.++..
T Consensus        17 ~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (170)
T 3hcs_A           17 SKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE   65 (170)
T ss_dssp             GGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCChhhcCcEECCCCCH-HHHHHHHHHHHhCCCCCCCCccCcch
Confidence            35689999999999999999999 999999643     499999998765

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=96.64  E-value=0.00026  Score=57.66  Aligned_cols=42  Identities=19%  Similarity=0.424  Sum_probs=36.1

Q ss_pred             cccccccccccCCceEEeCCCCeecchhhHhcC-----CCCCCCCccc
Q psy7970         124 KIEECMVCSLKKASVLFKPCYHMVACESCASLM-----KKCVQCRTQI  166 (290)
Q Consensus       124 ~i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~~-----~~Cp~Cr~~i  166 (290)
                      ..+.|.||++...+.+.+||||. +|..|..+.     ..||.||.++
T Consensus        30 ~~~~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~   76 (141)
T 3knv_A           30 AKYLCSACRNVLRRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEG   76 (141)
T ss_dssp             GGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHGGGSCEECHHHHHTT
T ss_pred             cCcCCCCCChhhcCcEECCCCCc-cCHHHHHHHHhcCCCCCCCCCCcc
Confidence            35689999999888899999999 999999653     4899999875

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=96.57  E-value=0.002  Score=49.31  Aligned_cols=33  Identities=30%  Similarity=0.683  Sum_probs=27.4

Q ss_pred             eEEeCCCCeecchhhHhc-----CCCCCCCCcccccccc
Q psy7970         138 VLFKPCYHMVACESCASL-----MKKCVQCRTQIDHMHP  171 (290)
Q Consensus       138 ~~~~PCgH~~~C~~Ca~~-----~~~Cp~Cr~~i~~~~~  171 (290)
                      ..++||+|. +|.+|+..     .+.||.|+.+|.++..
T Consensus        15 gRmIPCkHv-FCydCa~~~~~~~~k~Cp~C~~~V~rVe~   52 (101)
T 3vk6_A           15 GRMIPCKHV-FCYDCAILHEKKGDKMCPGCSDPVQRIEQ   52 (101)
T ss_dssp             EEEETTCCE-EEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred             eeecccccc-HHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence            367899996 99999953     5789999999988653

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=96.42  E-value=0.0021  Score=49.79  Aligned_cols=29  Identities=21%  Similarity=0.298  Sum_probs=24.5

Q ss_pred             ceEEeCCCCeecchhhHhc----CCCCCCCCccc
Q psy7970         137 SVLFKPCYHMVACESCASL----MKKCVQCRTQI  166 (290)
Q Consensus       137 ~~~~~PCgH~~~C~~Ca~~----~~~Cp~Cr~~i  166 (290)
                      .++.+||||. ++..|...    -..||+||...
T Consensus        67 ~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~   99 (106)
T 3dpl_R           67 TVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREW   99 (106)
T ss_dssp             CEEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBC
T ss_pred             eEeecccCcE-ECHHHHHHHHHcCCcCcCCCCcc
Confidence            4678899999 99999964    46899999885

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=96.34  E-value=0.0037  Score=46.24  Aligned_cols=44  Identities=7%  Similarity=-0.192  Sum_probs=38.1

Q ss_pred             cccccccccccCCceEEeCCCCeecchhhHhc----CCCCCCCCccccc
Q psy7970         124 KIEECMVCSLKKASVLFKPCYHMVACESCASL----MKKCVQCRTQIDH  168 (290)
Q Consensus       124 ~i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~----~~~Cp~Cr~~i~~  168 (290)
                      ..+.|.+|++-..+.+.+||||. +|..|..+    ...||.||+++..
T Consensus        13 ~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~   60 (85)
T 2kr4_A           13 DEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTE   60 (85)
T ss_dssp             TTTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             hheECcccCchhcCCeECCCCCE-ECHHHHHHHHhcCCCCCCCcCCCCh
Confidence            45789999999999999999999 99999853    4689999988754

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=96.30  E-value=0.0018  Score=49.52  Aligned_cols=41  Identities=27%  Similarity=0.572  Sum_probs=31.6

Q ss_pred             cccccccccccc--ccccCCccchHHHhcC-----CCCCCCccccccc
Q psy7970         246 MCPVCLDRLKNM--IFLCGHGTCQMCGDRM-----SECPICRKAVEKR  286 (290)
Q Consensus       246 ~C~IC~~~~~~~--v~~CGH~fC~~C~~~~-----~~CP~CR~~i~~~  286 (290)
                      .|++|---++.-  +++|.|.||..|+..|     ..||.|+.+|.+.
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV   50 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI   50 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence            477776655444  5679999999999764     4799999998764

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=96.15  E-value=0.0034  Score=47.99  Aligned_cols=44  Identities=7%  Similarity=-0.178  Sum_probs=37.7

Q ss_pred             cccccccccccCCceEEeCCCCeecchhhHhc----CCCCCCCCccccc
Q psy7970         124 KIEECMVCSLKKASVLFKPCYHMVACESCASL----MKKCVQCRTQIDH  168 (290)
Q Consensus       124 ~i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~----~~~Cp~Cr~~i~~  168 (290)
                      ..+.|.+|++-..+.+.+||||. +|..|..+    ...||.||.++..
T Consensus        28 ~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~   75 (100)
T 2kre_A           28 DEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTE   75 (100)
T ss_dssp             TTTBCTTTCSBCSSEEEETTTEE-EEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred             HhhCCcCccCcccCCeECCCCCE-EchHHHHHHHHcCCCCCCCCCCCCh
Confidence            35689999999999999999999 99999854    3589999988654

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=96.11  E-value=0.0044  Score=47.19  Aligned_cols=44  Identities=9%  Similarity=-0.140  Sum_probs=37.5

Q ss_pred             cccccccccccCCceEEeCCC-CeecchhhHhc----CCCCCCCCccccc
Q psy7970         124 KIEECMVCSLKKASVLFKPCY-HMVACESCASL----MKKCVQCRTQIDH  168 (290)
Q Consensus       124 ~i~~C~~C~~~~~~~~~~PCg-H~~~C~~Ca~~----~~~Cp~Cr~~i~~  168 (290)
                      ..+.|.+|++-..+.+.+||| |. +|..|..+    ...||+||+++..
T Consensus        21 ~~~~CpI~~~~m~dPV~~~cG~ht-f~r~cI~~~l~~~~~cP~~~~~l~~   69 (98)
T 1wgm_A           21 DEFLDPIMSTLMCDPVVLPSSRVT-VDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             TTTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             HhcCCcCccccccCCeECCCCCeE-ECHHHHHHHHHhCCCCCCCCCCCCh
Confidence            356899999999999999999 98 99999854    3589999988654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=95.82  E-value=0.0065  Score=53.67  Aligned_cols=44  Identities=5%  Similarity=-0.226  Sum_probs=37.5

Q ss_pred             cccccccccccCCceEEeCCCCeecchhhHhc-----CCCCCCCCccccc
Q psy7970         124 KIEECMVCSLKKASVLFKPCYHMVACESCASL-----MKKCVQCRTQIDH  168 (290)
Q Consensus       124 ~i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~-----~~~Cp~Cr~~i~~  168 (290)
                      ....|.+|.+...+.+.+||||. +|..|..+     ...||.||.++..
T Consensus       207 ~~~~c~i~~~~~~dPv~~~~gh~-f~~~~i~~~~~~~~~~cP~~~~~~~~  255 (281)
T 2c2l_A          207 DYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ  255 (281)
T ss_dssp             STTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             cccCCcCcCCHhcCCeECCCCCE-ECHHHHHHHHHHCCCCCcCCCCCCch
Confidence            45789999999999999999999 99999853     2349999998754

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=95.41  E-value=0.0063  Score=46.42  Aligned_cols=43  Identities=23%  Similarity=0.196  Sum_probs=30.0

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD   56 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~   56 (290)
                      ..++-+|++.|+|++.+|..|.|||+++......+.+.-+.+.
T Consensus        53 ~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~   95 (123)
T 3aaa_C           53 LEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSK   95 (123)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            3677788888888888888888888888554444444444443

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=95.40  E-value=0.0099  Score=46.10  Aligned_cols=39  Identities=26%  Similarity=0.249  Sum_probs=27.2

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhh
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKC   53 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~   53 (290)
                      .++-+|++.|||++.+|..|.|||+++......+.+.-+
T Consensus        90 ~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l  128 (137)
T 3c5r_A           90 DIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLP  128 (137)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhc
Confidence            466677777777777777777777777766666655544

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=95.13  E-value=0.0036  Score=49.44  Aligned_cols=28  Identities=21%  Similarity=0.291  Sum_probs=0.0

Q ss_pred             eEEeCCCCeecchhhHhc----CCCCCCCCccc
Q psy7970         138 VLFKPCYHMVACESCASL----MKKCVQCRTQI  166 (290)
Q Consensus       138 ~~~~PCgH~~~C~~Ca~~----~~~Cp~Cr~~i  166 (290)
                      ++..||||. ++..|..+    -..||+||.+.
T Consensus        79 v~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~~  110 (117)
T 4a0k_B           79 VAWGVCNHA-FHFHCISRWLKTRQVCPLDNREW  110 (117)
T ss_dssp             ---------------------------------
T ss_pred             cccCCcCce-EcHHHHHHHHHcCCcCCCCCCee
Confidence            456799999 99999964    46899999874

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=95.08  E-value=0.0055  Score=44.50  Aligned_cols=42  Identities=26%  Similarity=0.415  Sum_probs=28.5

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYK   55 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~   55 (290)
                      ..++-+|+++|+|++.+|..|.|||.++......+.++-+.+
T Consensus        15 ~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~   56 (93)
T 1n0q_A           15 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE   56 (93)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            367778888888888888888888887754444444444443

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=94.82  E-value=0.013  Score=48.96  Aligned_cols=27  Identities=30%  Similarity=0.443  Sum_probs=16.1

Q ss_pred             HHHHHHHh-CCCCCcccccCCCCCCCCC
Q psy7970          15 SIACFLAG-NGADLSIKNKKGQTPLDLC   41 (290)
Q Consensus        15 aiacfL~~-~Gadl~~~n~~g~tpldl~   41 (290)
                      .++-+|++ .|||++++|..|+|||+++
T Consensus       134 ~iv~~Ll~~~gad~~~~d~~G~TpL~~A  161 (186)
T 3t8k_A          134 PLYKLIFSQSGLQLLIKDKWGLTALEFV  161 (186)
T ss_dssp             HHHHHHHTSTTCCTTCCCTTSCCHHHHH
T ss_pred             HHHHHHHHhcCCCCcccCCCCCCHHHHH
Confidence            35555555 6666666666666666665

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=94.74  E-value=0.02  Score=50.54  Aligned_cols=38  Identities=21%  Similarity=0.320  Sum_probs=29.9

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCc-hhHHHHH
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDP-NLCKALT   51 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~-~~~~~l~   51 (290)
                      ..++-+|+++|||++++|.+|+|||+++..- .+.++|+
T Consensus       198 ~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~  236 (269)
T 4b93_B          198 VFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQ  236 (269)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTT
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHH
Confidence            3678899999999999999999999998643 3344443

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=94.43  E-value=0.017  Score=43.31  Aligned_cols=40  Identities=25%  Similarity=0.352  Sum_probs=22.9

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhh
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCY   54 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~   54 (290)
                      .++-||+++|+|++.+|..|+|||+++......+.+.-+.
T Consensus        56 ~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll   95 (115)
T 2l6b_A           56 EIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLD   95 (115)
T ss_dssp             HHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            4555666666666666666666666664444444444444

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=94.39  E-value=0.042  Score=47.95  Aligned_cols=41  Identities=27%  Similarity=0.337  Sum_probs=30.5

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD   56 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~   56 (290)
                      .++-+|+++|||++++|..|+|||+++.. ...+.+..+.++
T Consensus       246 ~~v~~Ll~~gad~~~~d~~g~t~l~~A~~-~~~~~l~~l~~~  286 (299)
T 1s70_B          246 EACRILVENLCDMEAVNKVGQTAFDVADE-DILGYLEELQKK  286 (299)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCTTTSCCS-GGGHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHH-HHHHHHHHHHHH
Confidence            56778888899988888889999988865 445555555543

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.39  E-value=0.026  Score=42.24  Aligned_cols=40  Identities=18%  Similarity=0.208  Sum_probs=33.5

Q ss_pred             ccccccccccCCceEEeC-CCCeecchhhHhc----------CCCCCC--CCcc
Q psy7970         125 IEECMVCSLKKASVLFKP-CYHMVACESCASL----------MKKCVQ--CRTQ  165 (290)
Q Consensus       125 i~~C~~C~~~~~~~~~~P-CgH~~~C~~Ca~~----------~~~Cp~--Cr~~  165 (290)
                      .+.|.+|++...+.+.+| |||. +|..|...          ...||.  |+..
T Consensus         7 ~~~CPI~~~~~~dPV~~~~cGh~-f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            7 GFTCPITKEEMKKPVKNKVCGHT-YEEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             CCBCTTTCSBCSSEEEESSSCCE-EEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             EeECcCcCchhcCCEEcCCCCCe-ecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            467999999999999997 9999 99999843          238999  8865

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=94.20  E-value=0.037  Score=46.76  Aligned_cols=44  Identities=5%  Similarity=-0.237  Sum_probs=36.7

Q ss_pred             cccccccccccCCceEEeCCCCeecchhhHhc-----CCCCCCCCccccc
Q psy7970         124 KIEECMVCSLKKASVLFKPCYHMVACESCASL-----MKKCVQCRTQIDH  168 (290)
Q Consensus       124 ~i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~-----~~~Cp~Cr~~i~~  168 (290)
                      .-..|.+|.+-..+.+++||||. +|..|..+     ...||.||.++..
T Consensus       105 ~~f~CPI~~elm~DPV~~~~Ght-fer~~I~~~l~~~~~tcP~t~~~l~~  153 (179)
T 2f42_A          105 DYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFDPVTRSPLTQ  153 (179)
T ss_dssp             GGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             HhhcccCccccCCCCeECCCCCE-ECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence            34689999999999999999998 99999843     2359999988754

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=94.15  E-value=0.039  Score=44.66  Aligned_cols=42  Identities=33%  Similarity=0.283  Sum_probs=31.9

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD   56 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~   56 (290)
                      .++-+|+++|||++.+|..|+|||+++........+..+.+.
T Consensus       119 ~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~  160 (179)
T 3f6q_A          119 QVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKM  160 (179)
T ss_dssp             HHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHh
Confidence            577888888888888888888888888776665555555543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=94.06  E-value=0.014  Score=42.28  Aligned_cols=41  Identities=27%  Similarity=0.415  Sum_probs=32.9

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhh
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCY   54 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~   54 (290)
                      ..++-||++.|||++.+|..|.|||+++......+.+.-+.
T Consensus        48 ~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll   88 (93)
T 1n0q_A           48 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL   88 (93)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            36788999999999999999999999986555555554444

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=93.95  E-value=0.1  Score=43.91  Aligned_cols=45  Identities=16%  Similarity=0.136  Sum_probs=36.5

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhccc
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKE   58 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~~~   58 (290)
                      ..++-+|++.|||++.+|..|+|||+++......+.++-+.+...
T Consensus       164 ~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga  208 (236)
T 1ikn_D          164 PDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL  208 (236)
T ss_dssp             HHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSC
T ss_pred             HHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcch
Confidence            367889999999999999999999999987777676666665443

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=93.90  E-value=0.057  Score=42.87  Aligned_cols=28  Identities=25%  Similarity=0.309  Sum_probs=15.3

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCC
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCP   42 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~   42 (290)
                      .++-+|++.|+|++..|..|.|||+++.
T Consensus        89 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  116 (165)
T 3twr_A           89 EVAELLVKHGAVVNVADLWKFTPLHEAA  116 (165)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHHhCCCCCCCcCCCCCCHHHHHH
Confidence            3455555555555555555555555553

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.90  E-value=0.088  Score=38.39  Aligned_cols=48  Identities=25%  Similarity=0.535  Sum_probs=33.6

Q ss_pred             CCCCCCccccccccC--cceEeecCC-----Ccccccchhhhh------ccCCCCCCcchhh
Q psy7970          74 DMVTLDECRICSDLK--RDILFQPCG-----HVACCSVCAPRV------KKCLICREPVEKR  122 (290)
Q Consensus        74 ~~~~~~~C~iC~~~~--~~~~~~PCg-----H~~~C~~Ca~~~------~~Cp~Cr~~i~~~  122 (290)
                      ...+...|.||++..  .+.+++||+     |.. -..|-.+-      ..||+||..+...
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~f-H~~Cl~~Wl~~~~~~~CplCr~~~~~~   71 (80)
T 2d8s_A           11 TPSSQDICRICHCEGDDESPLITPCHCTGSLHFV-HQACLQQWIKSSDTRCCELCKYEFIME   71 (80)
T ss_dssp             CCTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCE-ETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred             CCCCCCCCeEcCccccCCCeeEeccccCCcCCee-CHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence            345567899999653  345678996     874 66776542      3899999987543

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=93.68  E-value=0.016  Score=47.71  Aligned_cols=43  Identities=21%  Similarity=0.363  Sum_probs=30.6

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD   56 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~   56 (290)
                      ..++-+|++.|||++.+|..|.|||.++......+.+.-+.+.
T Consensus        83 ~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~  125 (169)
T 4gpm_A           83 KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK  125 (169)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            4677888888888888888888888887555545555555444

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.53  E-value=0.046  Score=39.47  Aligned_cols=43  Identities=21%  Similarity=0.470  Sum_probs=35.0

Q ss_pred             CCCcccccccccccccc--ccCCccchHHHhcC------CCCCCCcccccc
Q psy7970         243 EQTMCPVCLDRLKNMIF--LCGHGTCQMCGDRM------SECPICRKAVEK  285 (290)
Q Consensus       243 e~~~C~IC~~~~~~~v~--~CGH~fC~~C~~~~------~~CP~CR~~i~~  285 (290)
                      ....|.||.+.+..-..  .|+|.|=..|+.+|      ..||.||..+..
T Consensus        14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~   64 (74)
T 2ct0_A           14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH   64 (74)
T ss_dssp             SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred             CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence            45789999999875433  49999999999977      369999998754

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=93.52  E-value=0.024  Score=47.70  Aligned_cols=43  Identities=19%  Similarity=0.284  Sum_probs=32.3

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhcc
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDK   57 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~~   57 (290)
                      .++-+|++.|||++++|..|+|||+++......+.+..+.+..
T Consensus       154 ~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~  196 (222)
T 3ehr_A          154 DIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTD  196 (222)
T ss_dssp             HHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC------
T ss_pred             HHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccc
Confidence            5788899999999999999999999998888888777776543

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=93.46  E-value=0.027  Score=41.97  Aligned_cols=40  Identities=20%  Similarity=0.486  Sum_probs=28.6

Q ss_pred             ccccccccccCCce---EEeCCCCeecchhhHhc------------CCCCCC--CCcc
Q psy7970         125 IEECMVCSLKKASV---LFKPCYHMVACESCASL------------MKKCVQ--CRTQ  165 (290)
Q Consensus       125 i~~C~~C~~~~~~~---~~~PCgH~~~C~~Ca~~------------~~~Cp~--Cr~~  165 (290)
                      ...|.||++.....   .+.||||. +|..|...            ...||.  |+..
T Consensus         5 ~~~C~IC~~~~~~~~~~~l~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            5 SSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CcCCcccCcccccccceEcCCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            35688888764432   23489999 99999831            238999  9977

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=93.24  E-value=0.027  Score=46.99  Aligned_cols=28  Identities=32%  Similarity=0.434  Sum_probs=26.1

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCC
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLC   41 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~   41 (290)
                      ..|+-||++.|||++.+|..|.|||.++
T Consensus        55 ~~iv~~Ll~~Gadvn~~d~~g~TpLh~a   82 (186)
T 3t8k_A           55 YKISMFLINKGADIKSRTKEGTTLFFPL   82 (186)
T ss_dssp             HHHHHHHHHTTCCSSCCCTTCCCTHHHH
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence            4589999999999999999999999986

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=93.24  E-value=0.034  Score=41.90  Aligned_cols=30  Identities=20%  Similarity=0.616  Sum_probs=25.0

Q ss_pred             CCCcccccccc-cccccc--c-cCCccchHHHhc
Q psy7970         243 EQTMCPVCLDR-LKNMIF--L-CGHGTCQMCGDR  272 (290)
Q Consensus       243 e~~~C~IC~~~-~~~~v~--~-CGH~fC~~C~~~  272 (290)
                      ++..|+||.+. +.+++.  + |+|.||..|+..
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~   35 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA   35 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence            56899999975 677765  3 999999999996

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=93.19  E-value=0.096  Score=40.40  Aligned_cols=42  Identities=17%  Similarity=0.143  Sum_probs=36.0

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD   56 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~   56 (290)
                      ..++-+|+++|+|++.+|..|.|||.++.. ...+.+.-+.+.
T Consensus        25 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~   66 (136)
T 1d9s_A           25 VETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLH   66 (136)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHC
Confidence            367889999999999999999999999988 777777777654

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=93.04  E-value=0.025  Score=46.48  Aligned_cols=44  Identities=20%  Similarity=0.347  Sum_probs=31.8

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhcc
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDK   57 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~~   57 (290)
                      ..++-+|++.|||++.+|..|.|||.++......+.++-+.+..
T Consensus        50 ~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g   93 (169)
T 4gpm_A           50 KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG   93 (169)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCc
Confidence            46778888888888888888888888885555455555555443

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=92.83  E-value=0.089  Score=46.23  Aligned_cols=28  Identities=43%  Similarity=0.838  Sum_probs=26.1

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCC
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCP   42 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~   42 (290)
                      .++-+|++.|||++.+|.+|+|||+++.
T Consensus       236 ~~v~~Ll~~gad~~~~d~~g~t~l~~A~  263 (285)
T 3d9h_A          236 ELACLLMDFGADTQAKNAEGKRPVELVP  263 (285)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCGGGGSC
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHhc
Confidence            6888999999999999999999999996

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=92.68  E-value=0.027  Score=42.77  Aligned_cols=41  Identities=17%  Similarity=0.149  Sum_probs=27.3

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYK   55 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~   55 (290)
                      .++-+|++.|+|++.+|..|.|||.++......+.+.-+.+
T Consensus        21 ~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   61 (123)
T 3aaa_C           21 DEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL   61 (123)
T ss_dssp             HHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence            56777788888888888888888887744444444444443

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=92.64  E-value=0.025  Score=42.49  Aligned_cols=43  Identities=28%  Similarity=0.401  Sum_probs=32.1

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD   56 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~   56 (290)
                      ..++-+|++.|+|++.+|..|.|||.++......+.++-+.+.
T Consensus        37 ~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~   79 (110)
T 2zgd_A           37 DDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA   79 (110)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            3678888899999999999999999888555555555555544

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=92.43  E-value=0.025  Score=43.82  Aligned_cols=42  Identities=17%  Similarity=0.170  Sum_probs=26.5

Q ss_pred             HHHHHHHHhCCCCCcccccC-CCCCCCCCCCchhHHHHHhhhh
Q psy7970          14 ASIACFLAGNGADLSIKNKK-GQTPLDLCPDPNLCKALTKCYK   55 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~-g~tpldl~~d~~~~~~l~~~~~   55 (290)
                      ..++-+|++.|+|++.+|.. |.|||.++......+.+.-+.+
T Consensus        57 ~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   99 (136)
T 1d9s_A           57 AQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHR   99 (136)
T ss_dssp             HHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            45667777777777777777 7777777754444444444443

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=92.38  E-value=0.043  Score=45.95  Aligned_cols=40  Identities=23%  Similarity=0.246  Sum_probs=21.4

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhh
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCY   54 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~   54 (290)
                      .++-+|++.|+|++.+|..|.|||+++......+.+.-+.
T Consensus       153 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  192 (231)
T 3aji_A          153 KMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV  192 (231)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            4555666666666666666666666654333333333333

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=92.38  E-value=0.032  Score=51.91  Aligned_cols=43  Identities=19%  Similarity=0.560  Sum_probs=34.4

Q ss_pred             CCCccccccccccc----ccc-----ccCCccchHHHhcCC---------------CCCCCcccccc
Q psy7970         243 EQTMCPVCLDRLKN----MIF-----LCGHGTCQMCGDRMS---------------ECPICRKAVEK  285 (290)
Q Consensus       243 e~~~C~IC~~~~~~----~v~-----~CGH~fC~~C~~~~~---------------~CP~CR~~i~~  285 (290)
                      ....|+||++.+.+    |..     .|||.|=..|+.+|.               .||.||++++.
T Consensus       307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            45689999998877    211     399999999998872               49999999853

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=92.21  E-value=0.035  Score=49.26  Aligned_cols=27  Identities=37%  Similarity=0.614  Sum_probs=13.5

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCC
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLC   41 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~   41 (290)
                      .++-||+++|||++.+|..|.|||+++
T Consensus       186 ~~v~~Ll~~ga~in~~d~~g~TpLh~A  212 (278)
T 1dcq_A          186 HIVDFLVQNSGNLDKQTGKGSTALHYC  212 (278)
T ss_dssp             HHHHHHHHHCSCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHHCCCCccccCCCCCCHHHHH
Confidence            444455555555555555555555544

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=92.08  E-value=0.073  Score=44.66  Aligned_cols=41  Identities=24%  Similarity=0.331  Sum_probs=24.8

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYK   55 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~   55 (290)
                      .++-+|++.|+|++..|..|.|||+++...+..+.+.-+.+
T Consensus       158 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  198 (237)
T 3b7b_A          158 DIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLS  198 (237)
T ss_dssp             HHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHH
Confidence            56667777777777777777777776644444444444443

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=91.96  E-value=0.037  Score=41.34  Aligned_cols=42  Identities=26%  Similarity=0.415  Sum_probs=29.2

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYK   55 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~   55 (290)
                      ..++-||++.|+|++.+|..|.|||.++......+.+.-+.+
T Consensus        48 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~   89 (126)
T 1n0r_A           48 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE   89 (126)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHH
Confidence            367778888888888888888888888754444444444443

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=91.94  E-value=0.029  Score=44.54  Aligned_cols=39  Identities=21%  Similarity=0.302  Sum_probs=18.9

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhh
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKC   53 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~   53 (290)
                      .++-+|++.|||++.+|..|.|||+++......+.+.-+
T Consensus        92 ~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~L  130 (156)
T 1bi7_B           92 DTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL  130 (156)
T ss_dssp             HHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHH
Confidence            344555555555555555555555555333333333333

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=91.63  E-value=0.059  Score=46.26  Aligned_cols=45  Identities=22%  Similarity=0.088  Sum_probs=34.5

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhccc
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKE   58 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~~~   58 (290)
                      ..++-+|++.|||++.+|..|+|||+++......+.+.-+.+...
T Consensus       205 ~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  249 (282)
T 1oy3_D          205 ASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA  249 (282)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCC
Confidence            367889999999999999999999999866665555555555443

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=91.62  E-value=0.042  Score=47.20  Aligned_cols=40  Identities=25%  Similarity=0.321  Sum_probs=24.4

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhh
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCY   54 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~   54 (290)
                      .++-+|++.|||++.+|..|.|||+++......+.+.-+.
T Consensus       171 ~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll  210 (253)
T 1yyh_A          171 DAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL  210 (253)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            5666777777777777777777777764433333333333

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=91.59  E-value=0.043  Score=42.44  Aligned_cols=43  Identities=28%  Similarity=0.250  Sum_probs=31.9

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD   56 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~   56 (290)
                      ..++-+|+++|+|++.+|..|.|||.++......+.++-+.+.
T Consensus        60 ~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~  102 (136)
T 2jab_A           60 LEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKH  102 (136)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            4678889999999999999999999988555444444444443

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=91.56  E-value=0.051  Score=40.65  Aligned_cols=33  Identities=27%  Similarity=0.416  Sum_probs=28.1

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchh
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNL   46 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~   46 (290)
                      ..++-||++.|||++.+|..|.|||+++.....
T Consensus        70 ~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~  102 (110)
T 2zgd_A           70 LEVVKLLLEAGADVXAQDKFGKTAFDISIDNGN  102 (110)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCCccccccCCCcHHHHHHHcCC
Confidence            367889999999999999999999998854433

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=91.05  E-value=0.048  Score=48.99  Aligned_cols=29  Identities=28%  Similarity=0.463  Sum_probs=16.1

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCC
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCP   42 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~   42 (290)
                      ..++-||+++|||++.+|..|.|||.++.
T Consensus       206 ~~iv~~Ll~~gadvn~~d~~G~TpLh~A~  234 (301)
T 2b0o_E          206 LPLVDFIIQNGGHLDAKAADGNTALHYAA  234 (301)
T ss_dssp             HHHHHHHHHHSSCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence            34555555555555555555555555553

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=90.80  E-value=0.049  Score=43.61  Aligned_cols=26  Identities=38%  Similarity=0.570  Sum_probs=12.9

Q ss_pred             HHHHHHhCCCCCcccccCCCCCCCCC
Q psy7970          16 IACFLAGNGADLSIKNKKGQTPLDLC   41 (290)
Q Consensus        16 iacfL~~~Gadl~~~n~~g~tpldl~   41 (290)
                      ++-+|++.|||++.+|..|.|||+++
T Consensus       117 ~v~~Ll~~ga~~~~~~~~g~t~l~~A  142 (172)
T 3v30_A          117 CVEALLARGADLTTEADSGYTPMDLA  142 (172)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             HHHHHHHcCCCccccCCCCCCHHHHH
Confidence            44445555555555555555555544

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=90.64  E-value=0.11  Score=38.71  Aligned_cols=43  Identities=26%  Similarity=0.349  Sum_probs=35.6

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD   56 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~   56 (290)
                      ..++-+|+++|+|++.+|..|.|||.++......+.+.-+.+.
T Consensus        22 ~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~   64 (115)
T 2l6b_A           22 AEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK   64 (115)
T ss_dssp             HHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTT
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence            3678899999999999999999999999776666666666643

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=90.64  E-value=0.3  Score=38.42  Aligned_cols=40  Identities=15%  Similarity=0.126  Sum_probs=32.3

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYK   55 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~   55 (290)
                      .++-+|+++|+|++.+|..|.|||.++. ....+.+..+.+
T Consensus        26 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~   65 (156)
T 1bi7_B           26 EEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLL   65 (156)
T ss_dssp             HHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHH
Confidence            5778999999999999999999999985 445555555554

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=90.39  E-value=0.066  Score=42.91  Aligned_cols=43  Identities=28%  Similarity=0.356  Sum_probs=32.7

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD   56 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~   56 (290)
                      ..++-+|++.|+|++.+|..|.|||+++......+.++-+.+.
T Consensus        93 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  135 (169)
T 2y1l_E           93 LEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN  135 (169)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            4688899999999999999999999988555555555555544

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=90.22  E-value=0.075  Score=41.75  Aligned_cols=40  Identities=23%  Similarity=0.229  Sum_probs=22.8

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhh
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCY   54 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~   54 (290)
                      .++-+|++.|+|++.+|..|.|||+++......+.+.-+.
T Consensus        81 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  120 (153)
T 1awc_B           81 NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI  120 (153)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            4556666666666666666666666664433333333333

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=90.22  E-value=0.066  Score=42.10  Aligned_cols=33  Identities=24%  Similarity=0.309  Sum_probs=28.2

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchh
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNL   46 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~   46 (290)
                      ..++-+|++.|||++.+|..|.|||+++.....
T Consensus       113 ~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~  145 (153)
T 1awc_B          113 QEVVELLIKYGADVHTQSKFCKTAFDISIDNGN  145 (153)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence            368889999999999999999999999844433

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=90.13  E-value=0.076  Score=48.68  Aligned_cols=28  Identities=25%  Similarity=0.538  Sum_probs=14.2

Q ss_pred             HHHHHHHhCC-CCCcccccCCCCCCCCCC
Q psy7970          15 SIACFLAGNG-ADLSIKNKKGQTPLDLCP   42 (290)
Q Consensus        15 aiacfL~~~G-adl~~~n~~g~tpldl~~   42 (290)
                      .++-+|+++| +|++.+|..|.|||+++.
T Consensus       293 ~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~  321 (373)
T 2fo1_E          293 PIVKYLVGEKGSNKDKQDEDGKTPIMLAA  321 (373)
T ss_dssp             HHHHHHHHHSCCCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHhcCCCccCcCCCCCCHHHHHH
Confidence            4445555443 555555555555555553

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=90.12  E-value=0.068  Score=41.17  Aligned_cols=40  Identities=10%  Similarity=0.105  Sum_probs=22.7

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhh
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCY   54 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~   54 (290)
                      .++-+|++.|+|++.+|..|.|||+++......+.+.-+.
T Consensus        57 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   96 (137)
T 3c5r_A           57 KVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL   96 (137)
T ss_dssp             HHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            4556666666666666666666666664333333333333

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=89.91  E-value=0.068  Score=47.33  Aligned_cols=42  Identities=24%  Similarity=0.260  Sum_probs=33.0

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYK   55 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~   55 (290)
                      ..++-+|++.|||++.+|..|+|||+++......+.+.-+.+
T Consensus       218 ~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~  259 (278)
T 1dcq_A          218 AECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ  259 (278)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            368889999999999999999999999965554444444443

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=89.91  E-value=0.064  Score=42.65  Aligned_cols=40  Identities=25%  Similarity=0.261  Sum_probs=23.5

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhh
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCY   54 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~   54 (290)
                      .++-+|++.|+|++.+|..|.|||+++......+.+..+.
T Consensus        83 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  122 (167)
T 3v31_A           83 DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL  122 (167)
T ss_dssp             HHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            5566666667777666666777766664433334433333

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=89.71  E-value=0.086  Score=40.68  Aligned_cols=43  Identities=28%  Similarity=0.349  Sum_probs=32.4

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD   56 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~   56 (290)
                      ..++-+|+++|+|++.+|..|.|||.++......+.+..+.+.
T Consensus        27 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   69 (136)
T 2jab_A           27 DDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN   69 (136)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            4678899999999999999999999998554444555444443

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=89.70  E-value=0.079  Score=41.52  Aligned_cols=26  Identities=27%  Similarity=0.520  Sum_probs=13.0

Q ss_pred             HHHHHHhCCCCCcccccCCCCCCCCC
Q psy7970          16 IACFLAGNGADLSIKNKKGQTPLDLC   41 (290)
Q Consensus        16 iacfL~~~Gadl~~~n~~g~tpldl~   41 (290)
                      ++-+|++.|+|++.+|..|.|||+++
T Consensus        83 ~v~~Ll~~g~~~~~~~~~g~t~L~~A  108 (156)
T 1bd8_A           83 TLKVLVEHGADVNVPDGTGALPIHLA  108 (156)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHH
T ss_pred             HHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence            44445555555555555555555544

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=89.68  E-value=0.088  Score=50.52  Aligned_cols=29  Identities=24%  Similarity=0.279  Sum_probs=16.8

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCC
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPD   43 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d   43 (290)
                      .++-+|+++|||++++|..|.|||+++..
T Consensus       221 ~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~  249 (497)
T 3lvq_E          221 DCLKLLLKGRALVGTVNEAGETALDIARK  249 (497)
T ss_dssp             HHHHHHHHTCCCCSCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            45555666666666666666666665533

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=89.56  E-value=0.084  Score=41.57  Aligned_cols=29  Identities=28%  Similarity=0.398  Sum_probs=16.7

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCC
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPD   43 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d   43 (290)
                      .++-+|++.|+|++.+|..|.|||+++..
T Consensus        84 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  112 (162)
T 1ihb_A           84 DTLQTLLEFQADVNIEDNEGNLPLHLAAK  112 (162)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            45555666666666666666666655533

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=89.46  E-value=0.18  Score=48.25  Aligned_cols=45  Identities=24%  Similarity=0.296  Sum_probs=37.6

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhccc
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDKE   58 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~~~   58 (290)
                      ..++-||+++|||++.+|..|.|||+++......+.+.-+++...
T Consensus       187 ~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga  231 (497)
T 3lvq_E          187 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRA  231 (497)
T ss_dssp             HHHHHHHHHHSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCC
T ss_pred             HHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            458889999999999999999999999987777776666665543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=89.46  E-value=0.061  Score=44.80  Aligned_cols=41  Identities=22%  Similarity=0.366  Sum_probs=30.6

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYK   55 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~   55 (290)
                      .++-+|++.|||++.+|..|.|||+++......+.+.-+.+
T Consensus       191 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~  231 (240)
T 3eu9_A          191 TVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQE  231 (240)
T ss_dssp             HHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            56778888899998889999999988865555555544443

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=88.92  E-value=0.091  Score=44.85  Aligned_cols=40  Identities=23%  Similarity=0.267  Sum_probs=24.8

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhh
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCY   54 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~   54 (290)
                      .++-+|++.|||++.+|..|.|||+++......+.+.-+.
T Consensus        84 ~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll  123 (239)
T 1ycs_B           84 EIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV  123 (239)
T ss_dssp             HHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            4566677777777777777777777764444444444444

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=88.91  E-value=0.11  Score=41.86  Aligned_cols=39  Identities=21%  Similarity=0.123  Sum_probs=20.7

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhh
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKC   53 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~   53 (290)
                      .++-+|++.|+|++.+|..|.|||+++......+.+.-+
T Consensus        86 ~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~L  124 (179)
T 3f6q_A           86 DIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDL  124 (179)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            355556666666666666666666665333333333333

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=88.90  E-value=0.14  Score=42.87  Aligned_cols=34  Identities=24%  Similarity=0.248  Sum_probs=28.8

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhH
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLC   47 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~   47 (290)
                      ..++-+|++.|||++.+|..|.|||+++......
T Consensus       134 ~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~  167 (232)
T 2rfa_A          134 EEIVRLLIEHGADIRAQDSLGNTVLHILILQPNK  167 (232)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCH
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCh
Confidence            3688899999999999999999999999544433

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=88.87  E-value=0.13  Score=42.65  Aligned_cols=42  Identities=24%  Similarity=0.311  Sum_probs=26.4

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYK   55 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~   55 (290)
                      ..++-+|++.|+|++.+|..|.|||+++......+.+.-+.+
T Consensus       138 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  179 (223)
T 2f8y_A          138 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLD  179 (223)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHH
Confidence            356777777777777777777777777744443344443433

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=88.85  E-value=0.19  Score=44.86  Aligned_cols=43  Identities=16%  Similarity=0.313  Sum_probs=34.8

Q ss_pred             ccccccccccCCceEEe-CCCCeecchhhHhcC------CCCCC--CCccccc
Q psy7970         125 IEECMVCSLKKASVLFK-PCYHMVACESCASLM------KKCVQ--CRTQIDH  168 (290)
Q Consensus       125 i~~C~~C~~~~~~~~~~-PCgH~~~C~~Ca~~~------~~Cp~--Cr~~i~~  168 (290)
                      -..|.+|++...+.+.. .|||. +|..|..+.      ..||.  |++.+..
T Consensus       181 el~CPIcl~~f~DPVts~~CGHs-FcR~cI~~~~~~~~~~~CPvtGCr~~l~~  232 (267)
T 3htk_C          181 ELTCPITCKPYEAPLISRKCNHV-FDRDGIQNYLQGYTTRDCPQAACSQVVSM  232 (267)
T ss_dssp             CSBCTTTSSBCSSEEEESSSCCE-EEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred             eeECcCccCcccCCeeeCCCCCc-ccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence            35788898888888875 99998 999999643      36999  9987654

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=88.84  E-value=0.22  Score=34.16  Aligned_cols=43  Identities=26%  Similarity=0.630  Sum_probs=31.6

Q ss_pred             cCCCcccccccccccccc-ccC--C---ccchHHHhcC------CCCCCCccccc
Q psy7970         242 KEQTMCPVCLDRLKNMIF-LCG--H---GTCQMCGDRM------SECPICRKAVE  284 (290)
Q Consensus       242 ~e~~~C~IC~~~~~~~v~-~CG--H---~fC~~C~~~~------~~CP~CR~~i~  284 (290)
                      ++...|.||++...++.+ +|.  +   .|=..|+.+|      ..||+|+..+.
T Consensus         4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            456789999987666644 544  4   5667788877      37999998875

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=88.62  E-value=0.095  Score=47.01  Aligned_cols=41  Identities=17%  Similarity=0.106  Sum_probs=32.8

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhh
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCY   54 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~   54 (290)
                      ..++-+|++.|||++++|..|+|||+++......+.+.-+.
T Consensus       239 ~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll  279 (301)
T 2b0o_E          239 PDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLE  279 (301)
T ss_dssp             HHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            36889999999999999999999999996555444444444

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=88.58  E-value=0.092  Score=42.80  Aligned_cols=27  Identities=30%  Similarity=0.550  Sum_probs=18.8

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCC
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLC   41 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~   41 (290)
                      .++-+|++.|||++.+|..|+|||+++
T Consensus       124 ~~v~~Ll~~ga~~~~~d~~g~tpl~~A  150 (183)
T 3deo_A          124 EVVEALVELGADIEVEDERGLTALELA  150 (183)
T ss_dssp             HHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred             HHHHHHHHcCCCCcCCCCCCCCHHHHH
Confidence            456667777777777777777777665

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=88.56  E-value=0.11  Score=41.06  Aligned_cols=29  Identities=34%  Similarity=0.511  Sum_probs=19.1

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCC
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPD   43 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d   43 (290)
                      .++-+|++.|+|++.+|..|.|||.++..
T Consensus        56 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   84 (165)
T 3twr_A           56 SVVEYLLQHGADVHAKDKGGLVPLHNACS   84 (165)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence            56666666666666666666666666633

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=88.29  E-value=0.2  Score=42.89  Aligned_cols=43  Identities=19%  Similarity=0.178  Sum_probs=35.7

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhcc
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKDK   57 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~~   57 (290)
                      .++-+|++.|||++.+|..|.|||.++......+.+..+.+..
T Consensus        59 ~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~  101 (282)
T 1oy3_D           59 STVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPR  101 (282)
T ss_dssp             HHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSC
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccC
Confidence            5778899999999999999999999998777777777666543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=88.16  E-value=0.12  Score=44.20  Aligned_cols=26  Identities=19%  Similarity=0.244  Sum_probs=14.4

Q ss_pred             HHHHHHhCCCCCcccccCCCCCCCCC
Q psy7970          16 IACFLAGNGADLSIKNKKGQTPLDLC   41 (290)
Q Consensus        16 iacfL~~~Gadl~~~n~~g~tpldl~   41 (290)
                      ++-+|++.|+|++.+|..|.|||.++
T Consensus       139 ~v~~Ll~~g~~~~~~d~~g~t~L~~A  164 (253)
T 1yyh_A          139 MLEDLINSHADVNAVDDLGKSALHWA  164 (253)
T ss_dssp             HHHHHHHTTCCTTCBCTTSCBHHHHH
T ss_pred             HHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            44555555555555555555555555

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=88.16  E-value=0.13  Score=40.28  Aligned_cols=42  Identities=19%  Similarity=0.301  Sum_probs=31.5

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYK   55 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~   55 (290)
                      ..++-+|++.|+|++.+|..|.|||.++......+.+.-+.+
T Consensus        48 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   89 (156)
T 1bd8_A           48 TAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE   89 (156)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            467788888899998888899999888865555555555554

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=88.08  E-value=0.13  Score=41.89  Aligned_cols=40  Identities=25%  Similarity=0.419  Sum_probs=24.0

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhh
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCY   54 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~   54 (290)
                      .++-+|++.|+|++.+|..|.|||+++......+.+.-+.
T Consensus       115 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  154 (192)
T 2rfm_A          115 EMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLL  154 (192)
T ss_dssp             HHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            4566677777777777777777777664444334444443

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=88.05  E-value=0.14  Score=40.96  Aligned_cols=43  Identities=28%  Similarity=0.309  Sum_probs=33.0

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD   56 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~   56 (290)
                      ..++-+|+++|+|++..|..|.|||+++......+.+.-+.+.
T Consensus        60 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  102 (169)
T 2y1l_E           60 LEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN  102 (169)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            4788999999999999999999999998554444444444443

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=87.98  E-value=0.11  Score=45.43  Aligned_cols=42  Identities=14%  Similarity=0.120  Sum_probs=32.7

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYK   55 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~   55 (290)
                      ..++-+|++.|||++.+|..|.|||+++......+.+.-+.+
T Consensus       196 ~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~  237 (276)
T 4hbd_A          196 VDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLA  237 (276)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh
Confidence            367889999999999999999999999865555555555553

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=87.98  E-value=0.11  Score=46.82  Aligned_cols=41  Identities=15%  Similarity=0.254  Sum_probs=25.5

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYK   55 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~   55 (290)
                      .++-+|++.|||++.+|..|.|||+++......+.+.-+.+
T Consensus       225 ~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~  265 (364)
T 3ljn_A          225 DVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQ  265 (364)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHH
Confidence            56667777777777777777777777644444444444443

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=87.85  E-value=0.14  Score=38.06  Aligned_cols=42  Identities=26%  Similarity=0.415  Sum_probs=29.0

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYK   55 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~   55 (290)
                      ..++-+|+++|+|++..|..|.|||.++......+.+..+.+
T Consensus        15 ~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~   56 (126)
T 1n0r_A           15 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE   56 (126)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHH
Confidence            467778888888888888888888888754444444444443

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=87.77  E-value=0.15  Score=43.55  Aligned_cols=40  Identities=28%  Similarity=0.277  Sum_probs=21.2

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhh
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCY   54 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~   54 (290)
                      .++-||++.|||++.+|..|.|||.++......+.+.-+.
T Consensus        68 ~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll  107 (229)
T 2vge_A           68 SIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALV  107 (229)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            4455566666666666666666666654333333333333

>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}

Probab=87.71  E-value=0.27  Score=36.02  Aligned_cols=59  Identities=17%  Similarity=0.436  Sum_probs=35.3

Q ss_pred             ccCCCCCCcchhhccccccccccccCCceEEeC-CCCee-cchhhHhcCCCCCCCCccccc
Q psy7970         110 KKCLICREPVEKRIKIEECMVCSLKKASVLFKP-CYHMV-ACESCASLMKKCVQCRTQIDH  168 (290)
Q Consensus       110 ~~Cp~Cr~~i~~~~~i~~C~~C~~~~~~~~~~P-CgH~~-~C~~Ca~~~~~Cp~Cr~~i~~  168 (290)
                      ..||.|.+++....+.+.|..|........|=| ||+.. .|..|+..-.-|+.|+.-|.+
T Consensus         3 ~~CP~C~~~l~~~~~~~~C~~C~~~~~~~afCPeCgq~Le~lkACGA~~yFC~~C~~LiSk   63 (81)
T 2jrp_A            3 ITCPVCHHALERNGDTAHCETCAKDFSLQALCPDCRQPLQVLKACGAVDYFCQNGHGLISK   63 (81)
T ss_dssp             CCCSSSCSCCEECSSEEECTTTCCEEEEEEECSSSCSCCCEEEETTEEEECCTTTTCCCCT
T ss_pred             CCCCCCCCccccCCCceECccccccCCCcccCcchhhHHHHHHhcCCcCeeeccCCCEeec
Confidence            469999999988777778888877655555444 33331 133444444445555544443

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=87.26  E-value=0.14  Score=47.60  Aligned_cols=28  Identities=32%  Similarity=0.752  Sum_probs=19.4

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCC
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCP   42 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~   42 (290)
                      .++.||+++|||++++|..|.|||+++.
T Consensus       282 ~~v~~LL~~Gad~~~~d~~G~TpL~~A~  309 (368)
T 3jue_A          282 GLACLFLKRGADLGARDSEGRDPLTIAM  309 (368)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHCcCCCCCcCCCCCCHHHHHH
Confidence            4566777777777777777777777663

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=87.09  E-value=0.64  Score=39.52  Aligned_cols=43  Identities=19%  Similarity=0.224  Sum_probs=34.4

Q ss_pred             HHHHHHHHhCCCCCcccc-cCCCCCCCCC--CCchhHHHHHhhhhc
Q psy7970          14 ASIACFLAGNGADLSIKN-KKGQTPLDLC--PDPNLCKALTKCYKD   56 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n-~~g~tpldl~--~d~~~~~~l~~~~~~   56 (290)
                      ..++-+|++.|||++.++ ..|.|||+++  ......+.+.-+.+.
T Consensus       100 ~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~  145 (229)
T 2vge_A          100 TVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADV  145 (229)
T ss_dssp             HHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHc
Confidence            467889999999999985 7999999999  666666666655544

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=86.75  E-value=0.15  Score=42.58  Aligned_cols=24  Identities=21%  Similarity=0.340  Sum_probs=9.1

Q ss_pred             HHHHhCCCCCcccccCCCCCCCCC
Q psy7970          18 CFLAGNGADLSIKNKKGQTPLDLC   41 (290)
Q Consensus        18 cfL~~~Gadl~~~n~~g~tpldl~   41 (290)
                      -+|++.|+|++.+|..|.|||+++
T Consensus       167 ~~Ll~~g~~~~~~~~~g~t~L~~A  190 (241)
T 1k1a_A          167 QLLLQHGANVNAQMYSGSSALHSA  190 (241)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHH
T ss_pred             HHHHHcCCCCCCcCCCCCCHHHHH
Confidence            333333333333333333333333

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=86.67  E-value=0.14  Score=44.80  Aligned_cols=42  Identities=24%  Similarity=0.380  Sum_probs=33.5

Q ss_pred             HHHHHHHHh-CCCCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970          14 ASIACFLAG-NGADLSIKNKKGQTPLDLCPDPNLCKALTKCYK   55 (290)
Q Consensus        14 ~aiacfL~~-~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~   55 (290)
                      ..++-+|++ .|||++++|.+|+|||+++......+.+.-+.+
T Consensus       229 ~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~  271 (276)
T 4hbd_A          229 KEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYS  271 (276)
T ss_dssp             HHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            367889999 999999999999999999966655555555543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=86.62  E-value=0.26  Score=39.96  Aligned_cols=41  Identities=22%  Similarity=0.272  Sum_probs=29.8

Q ss_pred             HHHHHHHhCCCCCcccc-cCCCCCCCCCCCchhHHHHHhhhh
Q psy7970          15 SIACFLAGNGADLSIKN-KKGQTPLDLCPDPNLCKALTKCYK   55 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n-~~g~tpldl~~d~~~~~~l~~~~~   55 (290)
                      .++-+|++.|||++.++ ..|.|||+++......+.+.-+.+
T Consensus        90 ~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~  131 (183)
T 3deo_A           90 KCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE  131 (183)
T ss_dssp             HHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHH
Confidence            57788888999998887 888899988855444444444443

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=86.42  E-value=0.2  Score=41.77  Aligned_cols=27  Identities=26%  Similarity=0.338  Sum_probs=15.1

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCC
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLC   41 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~   41 (290)
                      .++-+|++.|+|++.+|..|.|||+++
T Consensus       120 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A  146 (231)
T 3aji_A          120 EIAVMLLEGGANPDAKDHYDATAMHRA  146 (231)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence            455555555555555555555555555

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=86.28  E-value=0.2  Score=41.94  Aligned_cols=40  Identities=13%  Similarity=0.201  Sum_probs=24.8

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhh
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCY   54 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~   54 (290)
                      .++-+|++.|+|++.+|..|.|||+++......+.+.-+.
T Consensus       125 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  164 (237)
T 3b7b_A          125 DLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILL  164 (237)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            5667777777777777777777777764433333443333

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=86.28  E-value=0.19  Score=43.17  Aligned_cols=27  Identities=30%  Similarity=0.550  Sum_probs=21.0

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCC
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLC   41 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~   41 (290)
                      .++-+|++.|||++.+|..|.|||+++
T Consensus       125 ~~v~~Ll~~ga~~~~~d~~g~t~l~~A  151 (244)
T 3ui2_A          125 EVVEALVELGADIEVEDERGLTALELA  151 (244)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence            567778888888888888888887776

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=86.20  E-value=0.14  Score=44.95  Aligned_cols=27  Identities=26%  Similarity=0.309  Sum_probs=13.4

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCC
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLC   41 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~   41 (290)
                      .++-+|++.|+|++.+|..|.|||.++
T Consensus       133 ~~~~~Ll~~g~~~n~~d~~g~TpL~~A  159 (269)
T 4b93_B          133 QVVKCLLDSNAKPNKKDLSGNTPLIYA  159 (269)
T ss_dssp             HHHHHHHHTTCCSCCCCTTCCCHHHHH
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            344445555555555555555555444

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=86.20  E-value=0.29  Score=45.22  Aligned_cols=27  Identities=33%  Similarity=0.501  Sum_probs=17.7

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCC
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLC   41 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~   41 (290)
                      .|+-+|+++|||++.+|.+|+|||+++
T Consensus       358 ~iv~~Ll~~ga~~~~~~~~g~t~l~~A  384 (437)
T 1n11_A          358 DIVTLLLKNGASPNEVSSDGTTPLAIA  384 (437)
T ss_dssp             HHHHHHHHTTCCSCCCCSSSCCHHHHH
T ss_pred             HHHHHHHHCcCCCCCCCCCCCCHHHHH
Confidence            455666666666666666666666665

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=86.14  E-value=0.2  Score=39.92  Aligned_cols=26  Identities=31%  Similarity=0.419  Sum_probs=12.9

Q ss_pred             HHHHHHhCCCCCcccccCCCCCCCCC
Q psy7970          16 IACFLAGNGADLSIKNKKGQTPLDLC   41 (290)
Q Consensus        16 iacfL~~~Gadl~~~n~~g~tpldl~   41 (290)
                      ++-+|++.|+|++.+|..|.|||.++
T Consensus        84 ~v~~Ll~~g~~~~~~~~~g~t~L~~A  109 (172)
T 3v30_A           84 IVGLLLERDVDINIYDWNGGTPLLYA  109 (172)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            44444555555555555555555444

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=86.01  E-value=0.17  Score=40.11  Aligned_cols=41  Identities=22%  Similarity=0.284  Sum_probs=29.1

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhh
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCY   54 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~   54 (290)
                      ..++-+|++.|+|++..|..|.|||.++......+.+.-+.
T Consensus        49 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   89 (167)
T 3v31_A           49 IAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLL   89 (167)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            46778888888888888888888888884444444444333

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=85.77  E-value=0.2  Score=44.18  Aligned_cols=26  Identities=27%  Similarity=0.362  Sum_probs=11.7

Q ss_pred             HHHHHHhCCCCCcccccCCCCCCCCC
Q psy7970          16 IACFLAGNGADLSIKNKKGQTPLDLC   41 (290)
Q Consensus        16 iacfL~~~Gadl~~~n~~g~tpldl~   41 (290)
                      ++-+|++.|||++.+|..|+|||+++
T Consensus       262 ~v~~Ll~~ga~~n~~d~~g~t~L~~A  287 (351)
T 3utm_A          262 VMEVLHKHGAKMNALDSLGQTALHRA  287 (351)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             HHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            33444444444444444444444444

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=85.74  E-value=0.2  Score=44.63  Aligned_cols=41  Identities=24%  Similarity=0.485  Sum_probs=32.0

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYK   55 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~   55 (290)
                      .|+-+|++.|||++.+|..|.|||.++........+..+.+
T Consensus       220 ~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~  260 (337)
T 4g8k_A          220 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE  260 (337)
T ss_dssp             HHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence            57788999999999999999999988866665566555553

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=85.56  E-value=0.18  Score=44.95  Aligned_cols=42  Identities=17%  Similarity=0.237  Sum_probs=31.6

Q ss_pred             HHHHHHHhCCCCCcccccC-CCCCCCCCCCchhHHHHHhhhhc
Q psy7970          15 SIACFLAGNGADLSIKNKK-GQTPLDLCPDPNLCKALTKCYKD   56 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~-g~tpldl~~d~~~~~~l~~~~~~   56 (290)
                      .++-+|+++|||+++++.+ |.|||.++..-...+.+.-+++.
T Consensus        39 ~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~   81 (337)
T 4g8k_A           39 DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH   81 (337)
T ss_dssp             HHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence            5788999999999998765 89999998555545555555443

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=85.53  E-value=0.64  Score=31.83  Aligned_cols=42  Identities=5%  Similarity=-0.051  Sum_probs=34.9

Q ss_pred             cccccccccCCceEEe-CCCCeecchhhHhc----CCCCCCCCccccc
Q psy7970         126 EECMVCSLKKASVLFK-PCYHMVACESCASL----MKKCVQCRTQIDH  168 (290)
Q Consensus       126 ~~C~~C~~~~~~~~~~-PCgH~~~C~~Ca~~----~~~Cp~Cr~~i~~  168 (290)
                      +.|.++++...+.++. ++||. ++..+..+    -..||+.++++..
T Consensus         4 ~~CpIs~~~m~dPV~~~~sG~~-yer~~I~~~l~~~~~cP~t~~~L~~   50 (61)
T 2bay_A            4 MLCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLSI   50 (61)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred             EEecCCCCCCCCCEEeCCCCcE-EcHHHHHHHHHhCCCCcCCcCCCCh
Confidence            4688888888899999 99999 99999954    3579999988754

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=85.44  E-value=0.21  Score=41.32  Aligned_cols=42  Identities=19%  Similarity=0.161  Sum_probs=28.2

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYK   55 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~   55 (290)
                      ..++-+|++.|+|++.+|..|.|||.++......+.+..+.+
T Consensus       105 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  146 (223)
T 2f8y_A          105 EGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK  146 (223)
T ss_dssp             HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence            357778888888888888888888887754444444444443

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=85.16  E-value=0.4  Score=37.49  Aligned_cols=42  Identities=14%  Similarity=0.065  Sum_probs=34.6

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD   56 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~   56 (290)
                      ..++-+|+++|+|++.+|..|.|||.++.. ...+.+..+.+.
T Consensus        18 ~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~   59 (162)
T 1ihb_A           18 LEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLR   59 (162)
T ss_dssp             HHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHc
Confidence            467888999999999999999999999877 666666666644

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=85.12  E-value=0.063  Score=45.89  Aligned_cols=42  Identities=26%  Similarity=0.309  Sum_probs=34.0

Q ss_pred             HHHHHHHhCCCCC-------cccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970          15 SIACFLAGNGADL-------SIKNKKGQTPLDLCPDPNLCKALTKCYKD   56 (290)
Q Consensus        15 aiacfL~~~Gadl-------~~~n~~g~tpldl~~d~~~~~~l~~~~~~   56 (290)
                      .++-+|++.|||+       +.+|..|+|||+++......+.+.-+.++
T Consensus       195 ~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  243 (256)
T 2etb_A          195 HMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR  243 (256)
T ss_dssp             HHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence            3889999999999       99999999999999666555555555544

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=84.94  E-value=0.26  Score=45.77  Aligned_cols=41  Identities=22%  Similarity=0.218  Sum_probs=28.1

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYK   55 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~   55 (290)
                      .++-||+++|||++.+|..|.|||+++........+.-+++
T Consensus       249 ~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~  289 (368)
T 3jue_A          249 LACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLK  289 (368)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            56777888888888888888888887754444444444443

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=84.88  E-value=0.25  Score=40.96  Aligned_cols=40  Identities=30%  Similarity=0.375  Sum_probs=25.2

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhh
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCY   54 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~   54 (290)
                      .++-+|++.|+|++.+|..|.|||+++......+.+.-+.
T Consensus       121 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  160 (228)
T 2dzn_A          121 EVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC  160 (228)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             hHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            5666777777777777777777777764444444444444

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=84.67  E-value=0.32  Score=42.76  Aligned_cols=29  Identities=24%  Similarity=0.248  Sum_probs=26.6

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCC
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCP   42 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~   42 (290)
                      ..++-+|++.|||++++|..|+||++++.
T Consensus       293 ~~~v~~Ll~~gad~~~~~~~g~tal~~a~  321 (351)
T 3utm_A          293 LQTCRLLLSYGSDPSIISLQGFTAAQMGN  321 (351)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHSC
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCChhhhhh
Confidence            36788999999999999999999999984

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=84.57  E-value=0.045  Score=46.85  Aligned_cols=45  Identities=16%  Similarity=0.202  Sum_probs=36.4

Q ss_pred             HHHHHHHHhCCCCC-------cccccCCCCCCCCCCCchhHHHHHhhhhccc
Q psy7970          14 ASIACFLAGNGADL-------SIKNKKGQTPLDLCPDPNLCKALTKCYKDKE   58 (290)
Q Consensus        14 ~aiacfL~~~Gadl-------~~~n~~g~tpldl~~d~~~~~~l~~~~~~~~   58 (290)
                      ..++-+|++.|||+       +++|..|.|||+++......+.+.-+.++..
T Consensus       198 ~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~  249 (260)
T 3jxi_A          198 TKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREI  249 (260)
T ss_dssp             HHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            36777999999999       7899999999999977766666666665543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=84.23  E-value=0.19  Score=41.98  Aligned_cols=27  Identities=22%  Similarity=0.067  Sum_probs=13.0

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCC
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLC   41 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~   41 (290)
                      .++-+|++.|+|++.+|..|.|||.++
T Consensus        87 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A  113 (222)
T 3ehr_A           87 SWLRECLDNRVGVNGLDKAGSTALYWA  113 (222)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             HHHHHHHhCCCCccccCCCCCCHHHHH
Confidence            344444444444444444444544444

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=84.18  E-value=0.25  Score=45.68  Aligned_cols=40  Identities=25%  Similarity=0.332  Sum_probs=21.9

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhh
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCY   54 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~   54 (290)
                      .++-||+++|||++.+|..|.|||+++......+.+.-+.
T Consensus       325 ~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll  364 (437)
T 1n11_A          325 KLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL  364 (437)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHH
Confidence            3555666666666666666666666654433333333333

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=83.98  E-value=0.28  Score=44.02  Aligned_cols=30  Identities=13%  Similarity=0.152  Sum_probs=26.9

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCC
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPD   43 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d   43 (290)
                      ..++-+|++.|||++.+|..|.|||.++..
T Consensus       144 ~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~  173 (327)
T 1sw6_A          144 LELVKHLVKHGSNRLYGDNMGESCLVKAVK  173 (327)
T ss_dssp             HHHHHHHHHTTCCTTBCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            367889999999999999999999999854

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=83.87  E-value=0.25  Score=41.49  Aligned_cols=43  Identities=26%  Similarity=0.281  Sum_probs=33.1

Q ss_pred             HHHHHHHHhCCCCCccccc-CCCCCCCCCCCchhHHHHHhhhhc
Q psy7970          14 ASIACFLAGNGADLSIKNK-KGQTPLDLCPDPNLCKALTKCYKD   56 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~-~g~tpldl~~d~~~~~~l~~~~~~   56 (290)
                      ..++-+|++.|+|++.+|. .|.|||+++......+.+.-+.+.
T Consensus       130 ~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~  173 (236)
T 1ikn_D          130 LGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC  173 (236)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            3678899999999999997 999999998655555555555543

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=83.65  E-value=0.33  Score=41.21  Aligned_cols=42  Identities=24%  Similarity=0.473  Sum_probs=32.6

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYK   55 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~   55 (290)
                      ..++-+|++.|+|++.+|..|.|||+++......+.++.+.+
T Consensus       199 ~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  240 (285)
T 1wdy_A          199 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE  240 (285)
T ss_dssp             HHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence            578888999999999999999999988865555555555554

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=83.49  E-value=0.27  Score=39.91  Aligned_cols=41  Identities=22%  Similarity=0.264  Sum_probs=31.5

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhh
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCY   54 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~   54 (290)
                      ..++-+|++.|+|++.+|..|.|||.++......+.+..+.
T Consensus        52 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll   92 (201)
T 3hra_A           52 IEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYML   92 (201)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            36778899999999999999999999885555555555554

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=83.28  E-value=0.33  Score=41.57  Aligned_cols=41  Identities=22%  Similarity=0.272  Sum_probs=29.1

Q ss_pred             HHHHHHHhCCCCCcccc-cCCCCCCCCCCCchhHHHHHhhhh
Q psy7970          15 SIACFLAGNGADLSIKN-KKGQTPLDLCPDPNLCKALTKCYK   55 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n-~~g~tpldl~~d~~~~~~l~~~~~   55 (290)
                      .++-||++.|||++.++ ..|.|||.++........+.-+.+
T Consensus        91 ~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  132 (244)
T 3ui2_A           91 KCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE  132 (244)
T ss_dssp             HHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            56778888888888877 778888888855554555555544

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=82.92  E-value=0.31  Score=41.41  Aligned_cols=29  Identities=21%  Similarity=0.302  Sum_probs=20.2

Q ss_pred             HHHHHHHHHhC-CCCCcccccCCCCCCCCC
Q psy7970          13 SASIACFLAGN-GADLSIKNKKGQTPLDLC   41 (290)
Q Consensus        13 ~~aiacfL~~~-Gadl~~~n~~g~tpldl~   41 (290)
                      ...++-+|+++ |+|++..|..|.|||.++
T Consensus       160 ~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a  189 (285)
T 1wdy_A          160 HVEVLKILLDEMGADVNACDNMGRNALIHA  189 (285)
T ss_dssp             CHHHHHHHHHTSCCCTTCCCTTSCCHHHHH
T ss_pred             CHHHHHHHHHhcCCCCCccCCCCCCHHHHH
Confidence            34666677766 777777777777777666

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=82.86  E-value=0.63  Score=31.83  Aligned_cols=46  Identities=22%  Similarity=0.485  Sum_probs=29.7

Q ss_pred             CCCCCccccccccCcceEeecCCCcc----cccchhhh------hccCCCCCCcch
Q psy7970          75 MVTLDECRICSDLKRDILFQPCGHVA----CCSVCAPR------VKKCLICREPVE  120 (290)
Q Consensus        75 ~~~~~~C~iC~~~~~~~~~~PCgH~~----~C~~Ca~~------~~~Cp~Cr~~i~  120 (290)
                      ..+...|.||++..-+-++.||.+..    +=..|..+      -..||+|+..+.
T Consensus         3 ~~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            3 DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             TCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            34567899999876666789976432    11224332      257999998764

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=82.76  E-value=0.63  Score=40.25  Aligned_cols=39  Identities=21%  Similarity=0.318  Sum_probs=22.4

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhh
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKC   53 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~   53 (290)
                      .++-+|+++|||++..|..|.|||.++......+.+.-+
T Consensus        87 ~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~L  125 (299)
T 1s70_B           87 DMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYL  125 (299)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Confidence            456666666666666666666666666433333333333

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=82.16  E-value=0.36  Score=41.03  Aligned_cols=29  Identities=21%  Similarity=0.235  Sum_probs=26.6

Q ss_pred             HHHHHHHHh---CCCCCcccccCCCCCCCCCC
Q psy7970          14 ASIACFLAG---NGADLSIKNKKGQTPLDLCP   42 (290)
Q Consensus        14 ~aiacfL~~---~Gadl~~~n~~g~tpldl~~   42 (290)
                      ..++-+|++   .|||++.+|..|.|||+++.
T Consensus       149 ~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~  180 (256)
T 2etb_A          149 WDVVTYLLENPHQPASLEATDSLGNTVLHALV  180 (256)
T ss_dssp             HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHhccccCCCcCccCCCCCCHHHHHH
Confidence            468889999   99999999999999999985

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=81.79  E-value=0.31  Score=40.64  Aligned_cols=42  Identities=14%  Similarity=0.177  Sum_probs=32.8

Q ss_pred             HHHHHHhCCCCC------cccccCCCCCCCCCCCchhHHHHHhhhhcc
Q psy7970          16 IACFLAGNGADL------SIKNKKGQTPLDLCPDPNLCKALTKCYKDK   57 (290)
Q Consensus        16 iacfL~~~Gadl------~~~n~~g~tpldl~~d~~~~~~l~~~~~~~   57 (290)
                      +.-+|++.|+|.      +.+|..|+|||+++......+.++-+.++.
T Consensus       173 i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g  220 (232)
T 2rfa_A          173 MYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKR  220 (232)
T ss_dssp             HHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            458999999998      689999999999996665555555555443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=81.38  E-value=0.32  Score=42.66  Aligned_cols=41  Identities=27%  Similarity=0.203  Sum_probs=28.0

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYK   55 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~   55 (290)
                      .++-+|+++|||++.+|..|.|||.++......+.+.-+.+
T Consensus        76 ~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~  116 (285)
T 3kea_A           76 KIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVK  116 (285)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence            56778888888888888888888888754444444444443

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=80.96  E-value=0.38  Score=39.74  Aligned_cols=40  Identities=23%  Similarity=0.238  Sum_probs=24.5

Q ss_pred             HHHHHHHhCC-CCCcccccCCCCCCCCCCCchhHHHHHhhh
Q psy7970          15 SIACFLAGNG-ADLSIKNKKGQTPLDLCPDPNLCKALTKCY   54 (290)
Q Consensus        15 aiacfL~~~G-adl~~~n~~g~tpldl~~d~~~~~~l~~~~   54 (290)
                      .++-+|++.| +|++.+|..|.|||+++......+.+..+.
T Consensus       154 ~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll  194 (228)
T 2dzn_A          154 KLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV  194 (228)
T ss_dssp             HHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            4666777777 777777777777777764444334444333

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=80.38  E-value=0.45  Score=40.41  Aligned_cols=29  Identities=28%  Similarity=0.398  Sum_probs=26.7

Q ss_pred             HHHHHHHHh---CCCCCcccccCCCCCCCCCC
Q psy7970          14 ASIACFLAG---NGADLSIKNKKGQTPLDLCP   42 (290)
Q Consensus        14 ~aiacfL~~---~Gadl~~~n~~g~tpldl~~   42 (290)
                      ..++-+|++   .|||++.+|..|.|||+++.
T Consensus       153 ~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~  184 (260)
T 3jxi_A          153 PHIVHYLTENGHKQADLRRQDSRGNTVLHALV  184 (260)
T ss_dssp             HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHhccccCCCCcccCCCCCcHHHHHH
Confidence            367889999   99999999999999999986

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=80.14  E-value=0.31  Score=41.46  Aligned_cols=42  Identities=14%  Similarity=0.032  Sum_probs=33.0

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYK   55 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~   55 (290)
                      ..++-+|++.|+|++.+|..|.|||.++......+.+.-+.+
T Consensus        50 ~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~   91 (239)
T 1ycs_B           50 FDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ   91 (239)
T ss_dssp             HHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            367889999999999999999999999955544444444443

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=80.04  E-value=0.47  Score=40.78  Aligned_cols=29  Identities=31%  Similarity=0.365  Sum_probs=26.6

Q ss_pred             HHHHHHHHh---CCCCCcccccCCCCCCCCCC
Q psy7970          14 ASIACFLAG---NGADLSIKNKKGQTPLDLCP   42 (290)
Q Consensus        14 ~aiacfL~~---~Gadl~~~n~~g~tpldl~~   42 (290)
                      ..++-||++   .|||++.+|.+|.|||+++.
T Consensus       161 ~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~  192 (273)
T 2pnn_A          161 LAIVKFLLQNSWQPADISARDSVGNTVLHALV  192 (273)
T ss_dssp             HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHhcccCCCCceeeCCCCCcHHHHHH
Confidence            368889999   99999999999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	290
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	4e-07
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	1e-05
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	2e-04
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	1e-04
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	3e-04
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	3e-04
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	0.001
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	0.001
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	0.002

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (107), Expect = 4e-07
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 8/72 (11%)

Query: 225 DTSTSDIQKLQQQLQDIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRMSE-------C 276
           D S   ++++Q  +  +++   CP+CL+ +K  +   C H  C+ C  ++         C
Sbjct: 2   DLSALRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQC 61

Query: 277 PICRKAVEKRIL 288
           P+C+  + KR L
Sbjct: 62  PLCKNDITKRSL 73

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (94), Expect = 1e-05
 Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 6/65 (9%)

Query: 232 QKLQQQLQDIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGD-----RMSECPICRKAVEK 285
           ++ +   +      +C +C +  K++    CGH  C  C           CP CR  ++ 
Sbjct: 11  EQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 70

Query: 286 RILLY 290
              + 
Sbjct: 71  TEPIV 75

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 77  TLDECRICSDLKRDILFQPCGHVACCSVCAP----RVKKCLICREPVEKRIKI 125
           T   C+IC++  +D+  +PCGH+ C S          + C  CR  ++    I
Sbjct: 22  TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 74

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (85), Expect = 1e-04
 Identities = 11/47 (23%), Positives = 16/47 (34%)

Query: 73  EDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRVKKCLICREPV 119
           E+      C+ C    +     PC H  C         +C IC+ P 
Sbjct: 1   EEEFQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPW 47

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (83), Expect = 3e-04
 Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 239 QDIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDR-MSECPICRKAV 283
           ++  +   C  C    K    L C H  C  C +    +CPIC+   
Sbjct: 1   EEEFQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPW 47

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.8 bits (85), Expect = 3e-04
 Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 6/56 (10%)

Query: 239 QDIKEQTMCPVCLDRLKNMIFL-CGHGTCQMC-----GDRMSECPICRKAVEKRIL 288
               +   C +C   L + +   C H  C++C         S CP CR       L
Sbjct: 18  AHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (80), Expect = 0.001
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 4/66 (6%)

Query: 227 STSDIQKLQQQLQDIKEQTMCPVCLDRLKNMIFL--CGHGTCQMCGDRM--SECPICRKA 282
                   +  L  +++   C  C + L+  + L  C H  C  C      + CP+C   
Sbjct: 5   GRGAWAHSRAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTP 64

Query: 283 VEKRIL 288
              + L
Sbjct: 65  AWIQDL 70

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 13/32 (40%), Positives = 16/32 (50%)

Query: 8   ADKKSSASIACFLAGNGADLSIKNKKGQTPLD 39
           A +  + SI   L   GAD  I NK G  P+D
Sbjct: 266 AARLGNISIVDALLDYGADPFIANKSGLRPVD 297

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 34.2 bits (78), Expect = 0.002
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 6/47 (12%)

Query: 247 CPVCLDRLKNMIFL--CGHGTCQMCGDRM----SECPICRKAVEKRI 287
           CP+CL+   N      C H  C +C  R       CP+C+  VE  +
Sbjct: 8   CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESVV 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	290
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.08
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.02
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	98.99
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	98.98
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.94
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.84
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	98.8
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.76
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.68
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.65
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	98.63
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.59
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.34
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.28
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	98.27
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	98.01
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	97.98
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	97.86
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	97.82
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	97.62
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	97.58
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	97.55
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	97.54
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	97.49
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	97.41
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	97.19
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	97.18
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	96.96
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	96.8
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	96.69
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	96.46
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	96.02
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	96.02
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	95.97
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	95.58
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	95.03
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	93.98
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	93.47
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	93.26
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	93.02
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	92.74
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	92.63
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	92.56
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	92.42
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	91.64
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	91.24
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	90.86
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	90.35
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	89.87
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	89.68
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	89.47
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	89.15
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	87.89
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	85.67
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	83.78
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	83.57
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	83.35
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	82.72
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	82.24
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	81.67

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.9e-11  Score=93.43  Aligned_cols=56  Identities=29%  Similarity=0.839  Sum_probs=46.6

Q ss_pred             HHHHHHHHHhccCCCccccccccccccccc-cCCccchHHHhcC-------CCCCCCccccccc
Q psy7970         231 IQKLQQQLQDIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRM-------SECPICRKAVEKR  286 (290)
Q Consensus       231 ~~~l~~~~~~l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~-------~~CP~CR~~i~~~  286 (290)
                      ++++++.++.+++.+.||||++.+.+|+++ |||.||..|+..|       ..||+||+++...
T Consensus         8 ~~~~~~~~~~l~~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   71 (103)
T d1jm7a_           8 VEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR   71 (103)
T ss_dssp             HHHHHHHHHHHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred             HHHHHHHHHhcccCcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChh
Confidence            445666677777889999999999999775 9999999999875       2699999998643

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=6.5e-11  Score=89.39  Aligned_cols=54  Identities=20%  Similarity=0.466  Sum_probs=45.3

Q ss_pred             HHHHHHhccCCCcccccccccccccc-c-cCCccchHHHhcCC--CCCCCcccccccc
Q psy7970         234 LQQQLQDIKEQTMCPVCLDRLKNMIF-L-CGHGTCQMCGDRMS--ECPICRKAVEKRI  287 (290)
Q Consensus       234 l~~~~~~l~e~~~C~IC~~~~~~~v~-~-CGH~fC~~C~~~~~--~CP~CR~~i~~~~  287 (290)
                      ..+.++.+++.+.|+||++.+.+|++ . |||+||..|+.+|.  .||.||.++....
T Consensus        12 ~~~~l~~l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~   69 (97)
T d1jm7b_          12 SRAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQD   69 (97)
T ss_dssp             HHHHHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSCSS
T ss_pred             HHHHHHhhhhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHhccccccCCcCchhh
Confidence            44556777888999999999999975 3 99999999999985  6999999886543

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.99  E-value=3.8e-11  Score=88.98  Aligned_cols=46  Identities=28%  Similarity=0.543  Sum_probs=39.5

Q ss_pred             cCCCccccccccccccccc-cCCccchHHHhcC-----CCCCCCcccccccc
Q psy7970         242 KEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRM-----SECPICRKAVEKRI  287 (290)
Q Consensus       242 ~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~-----~~CP~CR~~i~~~~  287 (290)
                      .+.+.|+||++.+.+|+++ |||.||+.|+.+|     ..||+||.++....
T Consensus        21 ~~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~   72 (86)
T d1rmda2          21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD   72 (86)
T ss_dssp             HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             ccCcCCccCCcchhcceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhh
Confidence            3458899999999999775 9999999999987     36999999986544

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.3e-10  Score=84.56  Aligned_cols=46  Identities=26%  Similarity=0.691  Sum_probs=39.4

Q ss_pred             CCccccccccccccccc-cCCccchHHHhcC-----CCCCCCcccccccccC
Q psy7970         244 QTMCPVCLDRLKNMIFL-CGHGTCQMCGDRM-----SECPICRKAVEKRILL  289 (290)
Q Consensus       244 ~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~-----~~CP~CR~~i~~~~~~  289 (290)
                      ...|+||++.+.+++++ |||.||..|+..|     ..||+||+.+.+...+
T Consensus        23 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~~i   74 (79)
T d1fbva4          23 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI   74 (79)
T ss_dssp             TTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCCCS
T ss_pred             CCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCcee
Confidence            35799999999999775 9999999999876     3699999999776544

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1.3e-10  Score=79.23  Aligned_cols=44  Identities=27%  Similarity=0.578  Sum_probs=38.4

Q ss_pred             CCCccccccccccccccc-cCCccchHHHhcCC-CCCCCccccccc
Q psy7970         243 EQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRMS-ECPICRKAVEKR  286 (290)
Q Consensus       243 e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~~-~CP~CR~~i~~~  286 (290)
                      +.+.|+||++.+.+|+++ |||.||..|+.++. .||+||+++...
T Consensus         5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~~~~CP~Cr~~~~~~   50 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWPLG   50 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSSSSSCSSCCSSSSCC
T ss_pred             CCCCCcccCcccCCCEEecCCCHHhHHHHHcCCCcCcCCCCcccCC
Confidence            347999999999999775 99999999999874 899999998643

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=3.3e-10  Score=82.44  Aligned_cols=48  Identities=10%  Similarity=0.115  Sum_probs=41.8

Q ss_pred             hccCCCccccccccccccccc-cCCccchHHHhcC-----CCCCCCcccccccc
Q psy7970         240 DIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRM-----SECPICRKAVEKRI  287 (290)
Q Consensus       240 ~l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~-----~~CP~CR~~i~~~~  287 (290)
                      ++.+++.||||++++++||++ |||+||+.|+.++     ..||.||.++....
T Consensus         3 eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~   56 (80)
T d2c2la2           3 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ   56 (80)
T ss_dssp             CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred             CCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCCccCCCccccccccc
Confidence            457889999999999999875 9999999999976     36999999987644

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.80  E-value=4.9e-10  Score=76.15  Aligned_cols=45  Identities=7%  Similarity=0.098  Sum_probs=39.4

Q ss_pred             Ccccccccccccccc-c-cCCccchHHHhcC----CCCCCCcccccccccC
Q psy7970         245 TMCPVCLDRLKNMIF-L-CGHGTCQMCGDRM----SECPICRKAVEKRILL  289 (290)
Q Consensus       245 ~~C~IC~~~~~~~v~-~-CGH~fC~~C~~~~----~~CP~CR~~i~~~~~~  289 (290)
                      +.|+||++.+.+||. + |||.||+.|+.+|    ..||+||+++...+++
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~dLi   51 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIV   51 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCE
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHhhccCCCccCCcCCHHhce
Confidence            479999999999975 4 9999999999988    4899999999876653

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.76  E-value=8.5e-10  Score=79.75  Aligned_cols=48  Identities=17%  Similarity=0.377  Sum_probs=41.2

Q ss_pred             hccCCCccccccccccccccc-cCCccchHHHhcC-----CCCCCCcccccccc
Q psy7970         240 DIKEQTMCPVCLDRLKNMIFL-CGHGTCQMCGDRM-----SECPICRKAVEKRI  287 (290)
Q Consensus       240 ~l~e~~~C~IC~~~~~~~v~~-CGH~fC~~C~~~~-----~~CP~CR~~i~~~~  287 (290)
                      ++.+++.||||++.+.+||++ |||+||+.|+.+|     ..||.|+.++....
T Consensus         4 eiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~   57 (78)
T d1t1ha_           4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG   57 (78)
T ss_dssp             CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred             CCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCCccc
Confidence            356889999999999999875 9999999999876     25999999986643

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=2.2e-09  Score=74.98  Aligned_cols=45  Identities=29%  Similarity=0.737  Sum_probs=35.3

Q ss_pred             CCCcccccccccccc-----cc-ccCCccchHHHhcCC-----CCCCCcccccccc
Q psy7970         243 EQTMCPVCLDRLKNM-----IF-LCGHGTCQMCGDRMS-----ECPICRKAVEKRI  287 (290)
Q Consensus       243 e~~~C~IC~~~~~~~-----v~-~CGH~fC~~C~~~~~-----~CP~CR~~i~~~~  287 (290)
                      |+..||||++.+..+     ++ .|||.||..|+..|+     .||+||+++.+..
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~   57 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN   57 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCccccc
Confidence            568999999865332     23 499999999999872     6999999986543

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.65  E-value=4.9e-09  Score=70.85  Aligned_cols=43  Identities=37%  Similarity=0.847  Sum_probs=36.4

Q ss_pred             ccCCCcccccccccccc--c--cc-cCCccchHHHhcCC----CCCCCcccc
Q psy7970         241 IKEQTMCPVCLDRLKNM--I--FL-CGHGTCQMCGDRMS----ECPICRKAV  283 (290)
Q Consensus       241 l~e~~~C~IC~~~~~~~--v--~~-CGH~fC~~C~~~~~----~CP~CR~~i  283 (290)
                      +++...|+||++.+.+.  +  ++ |||.|+..|+.+|.    .||+||.++
T Consensus         2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i   53 (55)
T d1iyma_           2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV   53 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred             CCCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEe
Confidence            57788999999998764  2  33 99999999999984    799999875

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=98.63  E-value=3.3e-09  Score=74.67  Aligned_cols=41  Identities=37%  Similarity=0.916  Sum_probs=35.4

Q ss_pred             Ccccccccccccccc--ccCCccchHHHhcC----CCCCCCcccccc
Q psy7970         245 TMCPVCLDRLKNMIF--LCGHGTCQMCGDRM----SECPICRKAVEK  285 (290)
Q Consensus       245 ~~C~IC~~~~~~~v~--~CGH~fC~~C~~~~----~~CP~CR~~i~~  285 (290)
                      ..|+||++.+.++++  +|||.||..|+.+|    ..||+||.++..
T Consensus         6 d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~~   52 (68)
T d1chca_           6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCccCCcCccCCcEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchHh
Confidence            469999999988744  49999999999988    489999999865

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=6.9e-09  Score=69.21  Aligned_cols=41  Identities=37%  Similarity=0.941  Sum_probs=33.3

Q ss_pred             Ccccccccccccc--c-c--ccCCccchHHHhcCC-----CCCCCcccccc
Q psy7970         245 TMCPVCLDRLKNM--I-F--LCGHGTCQMCGDRMS-----ECPICRKAVEK  285 (290)
Q Consensus       245 ~~C~IC~~~~~~~--v-~--~CGH~fC~~C~~~~~-----~CP~CR~~i~~  285 (290)
                      +.||||++.+.+.  + +  .|||.||..|+.+|.     .||+||+++.+
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            4699999987554  2 2  399999999999873     59999999864

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=7.2e-08  Score=72.53  Aligned_cols=49  Identities=12%  Similarity=0.105  Sum_probs=40.9

Q ss_pred             hccCCCccccccccccccccc-cC-CccchHHHhcCC----CCCCCccccccccc
Q psy7970         240 DIKEQTMCPVCLDRLKNMIFL-CG-HGTCQMCGDRMS----ECPICRKAVEKRIL  288 (290)
Q Consensus       240 ~l~e~~~C~IC~~~~~~~v~~-CG-H~fC~~C~~~~~----~CP~CR~~i~~~~~  288 (290)
                      ++-+++.||||.+++.+||+. || |+||+.||.+|+    .||+||+++....+
T Consensus        18 ~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~~L   72 (98)
T d1wgma_          18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQI   72 (98)
T ss_dssp             SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTS
T ss_pred             CCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhcCCcccccccccchhh
Confidence            345689999999999999875 55 589999999984    79999999876543

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.5e-07  Score=63.62  Aligned_cols=45  Identities=27%  Similarity=0.581  Sum_probs=38.7

Q ss_pred             CCCccccccccCcceEeecCCCcccccchhhhh-ccCCCCCCcchhh
Q psy7970          77 TLDECRICSDLKRDILFQPCGHVACCSVCAPRV-KKCLICREPVEKR  122 (290)
Q Consensus        77 ~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~-~~Cp~Cr~~i~~~  122 (290)
                      +..+|.||++...+.+++||||. +|..|..+. .+||+||+++...
T Consensus         5 ~~l~C~IC~~~~~~p~~lpCgH~-fC~~Ci~~~~~~CP~Cr~~~~~~   50 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLLPCLHT-LCSGCLEASGMQCPICQAPWPLG   50 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCC-SBTTTCSSSSSSCSSCCSSSSCC
T ss_pred             CCCCCcccCcccCCCEEecCCCH-HhHHHHHcCCCcCcCCCCcccCC
Confidence            44689999999999999999995 799997664 6999999998643

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=2.2e-07  Score=67.00  Aligned_cols=46  Identities=30%  Similarity=0.780  Sum_probs=39.4

Q ss_pred             cccccccccCCceEEeCCCCeecchhhHhc-----CCCCCCCCcccccccce
Q psy7970         126 EECMVCSLKKASVLFKPCYHMVACESCASL-----MKKCVQCRTQIDHMHPM  172 (290)
Q Consensus       126 ~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~-----~~~Cp~Cr~~i~~~~~~  172 (290)
                      ..|.+|++...+.+++||||. +|..|..+     .+.||+||..|.+...+
T Consensus        24 ~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~~i   74 (79)
T d1fbva4          24 QLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPI   74 (79)
T ss_dssp             TBCTTTSSSBCCEECSSSCCE-ECHHHHHHHHHTTCCSCTTTCCCCCCCCCS
T ss_pred             CCCccCCCcCCCeEEeCCCCe-eeHHHHHHHHHHCcCcCCCCCcCccCCcee
Confidence            469999999999999999998 89999843     35799999999876554

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=98.01  E-value=1.5e-06  Score=60.57  Aligned_cols=45  Identities=33%  Similarity=0.781  Sum_probs=36.4

Q ss_pred             CCCccccccccCcc-eEeecCCCcccccchhhhh----ccCCCCCCcchhh
Q psy7970          77 TLDECRICSDLKRD-ILFQPCGHVACCSVCAPRV----KKCLICREPVEKR  122 (290)
Q Consensus        77 ~~~~C~iC~~~~~~-~~~~PCgH~~~C~~Ca~~~----~~Cp~Cr~~i~~~  122 (290)
                      ..++|.||++...+ ++++||||. +|..|..+-    .+||+||+++...
T Consensus         4 ~~d~C~IC~~~~~~~~~~~~C~H~-Fc~~Ci~~w~~~~~~CP~CR~~i~~~   53 (68)
T d1chca_           4 VAERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESV   53 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred             CCCCCccCCcCccCCcEEeCCCCc-CcHHHHHHHHHhCCcCCCCCcchHhh
Confidence            45689999998765 566899996 799999753    7999999988653

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.98  E-value=8e-07  Score=67.99  Aligned_cols=42  Identities=24%  Similarity=0.645  Sum_probs=33.2

Q ss_pred             CCcccccccccccc------------------cc-ccCCccchHHHhcCC---------CCCCCcccccc
Q psy7970         244 QTMCPVCLDRLKNM------------------IF-LCGHGTCQMCGDRMS---------ECPICRKAVEK  285 (290)
Q Consensus       244 ~~~C~IC~~~~~~~------------------v~-~CGH~fC~~C~~~~~---------~CP~CR~~i~~  285 (290)
                      +..|+||++.+.++                  .+ .|||.|+..|+..|.         .||+||..+..
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             cccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhcc
Confidence            56799999987542                  22 399999999999873         59999988743

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.86  E-value=5.3e-06  Score=60.57  Aligned_cols=44  Identities=25%  Similarity=0.469  Sum_probs=37.7

Q ss_pred             cccccccccccCCceEEeCCCCeecchhhHhc-----CCCCCCCCccccc
Q psy7970         124 KIEECMVCSLKKASVLFKPCYHMVACESCASL-----MKKCVQCRTQIDH  168 (290)
Q Consensus       124 ~i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~-----~~~Cp~Cr~~i~~  168 (290)
                      +...|.+|++...+.+.+||||. +|..|..+     ..+||.||.++..
T Consensus        22 ~~l~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~p~~~   70 (86)
T d1rmda2          22 KSISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP   70 (86)
T ss_dssp             HHTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             cCcCCccCCcchhcceecCCCCh-hhHHHHHHHHhhCCCcCcccCCCCCh
Confidence            34589999999999999999999 99999953     3589999998653

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=97.82  E-value=2.9e-06  Score=57.50  Aligned_cols=44  Identities=20%  Similarity=0.437  Sum_probs=35.8

Q ss_pred             cCCCcccccccccccccc-c-----cCCccchHHHhcC------CCCCCCcccccc
Q psy7970         242 KEQTMCPVCLDRLKNMIF-L-----CGHGTCQMCGDRM------SECPICRKAVEK  285 (290)
Q Consensus       242 ~e~~~C~IC~~~~~~~v~-~-----CGH~fC~~C~~~~------~~CP~CR~~i~~  285 (290)
                      ++...|+||++.+.++.+ +     |+|.|+..|+..|      .+||+||+++.-
T Consensus         4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~~   59 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT   59 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred             CCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeeec
Confidence            567899999998887743 3     3599999999988      269999998753

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=8.5e-06  Score=59.46  Aligned_cols=26  Identities=27%  Similarity=0.535  Sum_probs=22.6

Q ss_pred             ccCCccchHHHhcC----CCCCCCcccccc
Q psy7970         260 LCGHGTCQMCGDRM----SECPICRKAVEK  285 (290)
Q Consensus       260 ~CGH~fC~~C~~~~----~~CP~CR~~i~~  285 (290)
                      .|||.|+..|+.+|    ..||+||+++.-
T Consensus        56 ~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~   85 (88)
T d3dplr1          56 VCNHAFHFHCISRWLKTRQVCPLDNREWEF   85 (88)
T ss_dssp             TTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred             cccCcccHHHHHHHHHHCCcCCCCCCcccc
Confidence            49999999999988    379999998753

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=2.2e-05  Score=53.95  Aligned_cols=42  Identities=29%  Similarity=0.734  Sum_probs=31.4

Q ss_pred             ccccccccc-----CCceEEeCCCCeecchhhHhc-----CCCCCCCCccccc
Q psy7970         126 EECMVCSLK-----KASVLFKPCYHMVACESCASL-----MKKCVQCRTQIDH  168 (290)
Q Consensus       126 ~~C~~C~~~-----~~~~~~~PCgH~~~C~~Ca~~-----~~~Cp~Cr~~i~~  168 (290)
                      ..|.||++.     ...+++.||||. +|..|..+     ...||.||+++.+
T Consensus         4 ~~CpIC~~~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~~CP~CR~~i~~   55 (65)
T d1g25a_           4 QGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             TCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCCCcCCceeecCCceEEEeCccChH-hhHHHHHHHhCcCcCCCCCCCcCccc
Confidence            467777653     234567899998 99999953     3579999998754

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=1.2e-05  Score=52.97  Aligned_cols=40  Identities=23%  Similarity=0.471  Sum_probs=29.0

Q ss_pred             ccccccccC----CceEEeCCCCeecchhhHhcC-----CCCCCCCcccc
Q psy7970         127 ECMVCSLKK----ASVLFKPCYHMVACESCASLM-----KKCVQCRTQID  167 (290)
Q Consensus       127 ~C~~C~~~~----~~~~~~PCgH~~~C~~Ca~~~-----~~Cp~Cr~~i~  167 (290)
                      +|.||++..    ..+..+||||. +|..|..+.     .+||.||.++.
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~-~c~~C~~~w~~~~~~~CP~CR~~~~   50 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYP   50 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCC-CCHHHHHHHTTTSCCBCTTTCCBCS
T ss_pred             CCcCCChhhhCCCceEEecCCCCc-cchHHHHHHHhhcCCCCCccCCcCC
Confidence            577776632    23345699998 999999642     36999999865

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=97.54  E-value=3.4e-05  Score=51.30  Aligned_cols=44  Identities=30%  Similarity=0.530  Sum_probs=33.4

Q ss_pred             CCCCccccccccCcc---eEee-cCCCcccccchhhhh----ccCCCCCCcch
Q psy7970          76 VTLDECRICSDLKRD---ILFQ-PCGHVACCSVCAPRV----KKCLICREPVE  120 (290)
Q Consensus        76 ~~~~~C~iC~~~~~~---~~~~-PCgH~~~C~~Ca~~~----~~Cp~Cr~~i~  120 (290)
                      ++..+|.||++.-.+   ++.+ +|||. ++..|..+-    ..||+||++|.
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~-Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCc-ccHHHHHHHHHhCCcCCCCCCEeE
Confidence            455689999987643   4444 69996 799999762    68999999863

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=2.3e-05  Score=58.65  Aligned_cols=42  Identities=26%  Similarity=0.597  Sum_probs=35.4

Q ss_pred             ccccccccccCCceEEeCCCCeecchhhHhc----C---CCCCCCCcccc
Q psy7970         125 IEECMVCSLKKASVLFKPCYHMVACESCASL----M---KKCVQCRTQID  167 (290)
Q Consensus       125 i~~C~~C~~~~~~~~~~PCgH~~~C~~Ca~~----~---~~Cp~Cr~~i~  167 (290)
                      ...|.+|++...+.+.+||||. +|..|..+    .   ..||.||.++.
T Consensus        21 ~l~CpIC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   69 (103)
T d1jm7a_          21 ILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDIT   69 (103)
T ss_dssp             HTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred             CcCCCccCchhCCeEEcCCCCc-hhhHHHHHHHHHCCCCCcCcCCCCcCC
Confidence            3579999999889999999998 99999853    2   38999998864

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=1.8e-05  Score=58.51  Aligned_cols=42  Identities=24%  Similarity=0.470  Sum_probs=34.3

Q ss_pred             ccccccccccCCceEEe-CCCCeecchhhHhcC--CCCCCCCcccc
Q psy7970         125 IEECMVCSLKKASVLFK-PCYHMVACESCASLM--KKCVQCRTQID  167 (290)
Q Consensus       125 i~~C~~C~~~~~~~~~~-PCgH~~~C~~Ca~~~--~~Cp~Cr~~i~  167 (290)
                      ...|.||.+...+.+.+ ||||. +|..|..+.  .+||.||.++.
T Consensus        22 ~l~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~~~CP~Cr~~~~   66 (97)
T d1jm7b_          22 LLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCIGTGCPVCYTPAW   66 (97)
T ss_dssp             TTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTTTBCSSSCCBCS
T ss_pred             cCCCccCCchhhcCceeCCCCCc-hhHHHHHHHHhccccccCCcCc
Confidence            45799999888887764 89999 999998654  57999998764

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=0.0001  Score=48.95  Aligned_cols=41  Identities=7%  Similarity=0.011  Sum_probs=35.2

Q ss_pred             ccccccccCCceEEeC-CCCeecchhhHh----cCCCCCCCCccccc
Q psy7970         127 ECMVCSLKKASVLFKP-CYHMVACESCAS----LMKKCVQCRTQIDH  168 (290)
Q Consensus       127 ~C~~C~~~~~~~~~~P-CgH~~~C~~Ca~----~~~~Cp~Cr~~i~~  168 (290)
                      .|.+|++...+.+.+| |||. +|..|..    +.++||.||+++..
T Consensus         2 ~C~Ic~~~~~~Pv~~~~cGh~-fc~~cI~~~l~~~~~CP~c~~~l~~   47 (56)
T d2baya1           2 LCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLSI   47 (56)
T ss_dssp             CCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred             CCccCCchHHhcCccCCCCCc-ccHHHHHHHHhhccCCCccCCcCCH
Confidence            4889999999999886 9999 9999985    45799999998765

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.18  E-value=0.00016  Score=51.26  Aligned_cols=48  Identities=17%  Similarity=0.157  Sum_probs=40.1

Q ss_pred             CCCCCCCccccccccCcceEeecCCCcccccchhhhh-----ccCCCCCCcchh
Q psy7970          73 EDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRV-----KKCLICREPVEK  121 (290)
Q Consensus        73 ~~~~~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~-----~~Cp~Cr~~i~~  121 (290)
                      .+.++...|.||++.-.+-+.+||||. +|..|-.+.     ..||+||+++..
T Consensus         2 ~eiP~~l~CpIc~~l~~dPv~~~cGht-fc~~ci~~~l~~~~~~cP~c~~~l~~   54 (80)
T d2c2la2           2 RDIPDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ   54 (80)
T ss_dssp             CCCCSTTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CCCCccccCcCcCchhhhhcccCCcCe-ecHHHHHHHHhcCCccCCCccccccc
Confidence            345677889999999999999999996 799997653     479999998864

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=6.4e-05  Score=54.95  Aligned_cols=31  Identities=19%  Similarity=0.497  Sum_probs=24.3

Q ss_pred             CCCcccccccccccc---ccc-cCCccchHHHhcC
Q psy7970         243 EQTMCPVCLDRLKNM---IFL-CGHGTCQMCGDRM  273 (290)
Q Consensus       243 e~~~C~IC~~~~~~~---v~~-CGH~fC~~C~~~~  273 (290)
                      ....|+||++.+...   .++ |||.||..|+..+
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~   38 (94)
T d1wima_           4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQY   38 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHH
T ss_pred             CCCcCccCCCcccCCceEEECCCCCEeCCcCHHHH
Confidence            347899999987542   344 9999999999864

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.80  E-value=0.00036  Score=49.10  Aligned_cols=47  Identities=17%  Similarity=0.288  Sum_probs=39.6

Q ss_pred             CCCCCCccccccccCcceEeecCCCcccccchhhh-----hccCCCCCCcchh
Q psy7970          74 DMVTLDECRICSDLKRDILFQPCGHVACCSVCAPR-----VKKCLICREPVEK  121 (290)
Q Consensus        74 ~~~~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~-----~~~Cp~Cr~~i~~  121 (290)
                      +.++...|.||++.-.+-+.+||||. +|..|-..     ...||.|+.++..
T Consensus         4 eiP~~l~CpIc~~~m~dPV~~~cgh~-fc~~ci~~~~~~~~~~cP~~~~~l~~   55 (78)
T d1t1ha_           4 EFPEYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             CCSSSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             CCCccCCCcCcCchhhCceEccCCCc-chHHHHHHHHHHCCCCCCcccccCCc
Confidence            45677899999999999999999999 69999754     2569999988754

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.69  E-value=0.00039  Score=52.36  Aligned_cols=43  Identities=19%  Similarity=0.426  Sum_probs=31.8

Q ss_pred             CCccccccccC------------------cceEeecCCCcccccchhhhh---------ccCCCCCCcchh
Q psy7970          78 LDECRICSDLK------------------RDILFQPCGHVACCSVCAPRV---------KKCLICREPVEK  121 (290)
Q Consensus        78 ~~~C~iC~~~~------------------~~~~~~PCgH~~~C~~Ca~~~---------~~Cp~Cr~~i~~  121 (290)
                      ...|.||++.-                  ..+.++||||.. +..|-...         .+||+||..+..
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~F-H~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAF-HLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEE-CHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             cccccchhheecccccccccccccccccccceEECCCCChh-hHHHHHHHHHhcCcCCCCccccccchhcc
Confidence            45799998753                  346788999994 89997542         269999987743

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.46  E-value=0.00065  Score=50.82  Aligned_cols=40  Identities=25%  Similarity=0.216  Sum_probs=20.0

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhh
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCY   54 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~   54 (290)
                      .++-||+..|+|++.+|..|.|||.++..-...+.+..+.
T Consensus        49 ~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll   88 (118)
T d1myoa_          49 EILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLL   88 (118)
T ss_dssp             THHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHHHHHHH
T ss_pred             ccccccccccceeeecccccccchhhhhhcCchhhhhhhh
Confidence            3445555555555555555555555553333333333333

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0048  Score=45.16  Aligned_cols=49  Identities=20%  Similarity=0.111  Sum_probs=42.2

Q ss_pred             CCCCCCCccccccccCcceEeecCCCcccccchhhhh----ccCCCCCCcchh
Q psy7970          73 EDMVTLDECRICSDLKRDILFQPCGHVACCSVCAPRV----KKCLICREPVEK  121 (290)
Q Consensus        73 ~~~~~~~~C~iC~~~~~~~~~~PCgH~~~C~~Ca~~~----~~Cp~Cr~~i~~  121 (290)
                      .+.++...|.||++.-.|-|.+||||..+|..|-.+.    ..||+||+++..
T Consensus        17 ~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~   69 (98)
T d1wgma_          17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             cCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhcCCcccccccccc
Confidence            3556778999999999999999999988899988763    689999998764

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0027  Score=45.53  Aligned_cols=30  Identities=20%  Similarity=0.318  Sum_probs=25.0

Q ss_pred             ceEEeCCCCeecchhhHhc----CCCCCCCCcccc
Q psy7970         137 SVLFKPCYHMVACESCASL----MKKCVQCRTQID  167 (290)
Q Consensus       137 ~~~~~PCgH~~~C~~Ca~~----~~~Cp~Cr~~i~  167 (290)
                      .++.+||||. ++..|..+    -..||+||.+..
T Consensus        51 ~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          51 TVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             CEEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CeEEccccCc-ccHHHHHHHHHHCCcCCCCCCccc
Confidence            4688999999 99999953    468999998853

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.97  E-value=0.0027  Score=53.38  Aligned_cols=40  Identities=28%  Similarity=0.341  Sum_probs=32.4

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYK   55 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~   55 (290)
                      -|+-+|+++|||++.+|..|+|||+++.. ++.+.|..+..
T Consensus       246 ~iv~lLl~~Gadv~~~d~~G~TaL~~A~e-~~~~~L~~~~~  285 (291)
T d1s70b_         246 EACRILVENLCDMEAVNKVGQTAFDVADE-DILGYLEELQK  285 (291)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCTTTSCCS-GGGHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHH-HHHHHHHHHhh
Confidence            46678999999999999999999999875 67777766643

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=95.58  E-value=0.0021  Score=42.65  Aligned_cols=45  Identities=22%  Similarity=0.485  Sum_probs=34.9

Q ss_pred             CCCCCccccccccCcceEeecCC-----Ccccccchhhhh------ccCCCCCCcch
Q psy7970          75 MVTLDECRICSDLKRDILFQPCG-----HVACCSVCAPRV------KKCLICREPVE  120 (290)
Q Consensus        75 ~~~~~~C~iC~~~~~~~~~~PCg-----H~~~C~~Ca~~~------~~Cp~Cr~~i~  120 (290)
                      .++...|.||++...+..+.||+     |. ++..|...-      .+||+||+++.
T Consensus         3 ded~~~C~IC~~~~~~~~~~~c~c~~c~h~-~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           3 DEDVPVCWICNEELGNERFRACGCTGELEN-VHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             TCSCCEETTTTEECSCCCCCSCCCSSGGGS-CCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCCccCCccCCCceeEecccCCCCCE-EcHHHHHHHHhhCCCCCCcccCCeee
Confidence            45667899999988888888886     55 588887652      47999999864

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.0088  Score=48.40  Aligned_cols=39  Identities=18%  Similarity=0.232  Sum_probs=31.6

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhh
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKC   53 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~   53 (290)
                      .++-+|++.|||++++|.+|+|||+++..-+-.+.+..+
T Consensus       159 ~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l  197 (221)
T d1iknd_         159 DLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQL  197 (221)
T ss_dssp             HHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHH
T ss_pred             HHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHH
Confidence            678999999999999999999999999655444444433

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.98  E-value=0.013  Score=45.80  Aligned_cols=40  Identities=28%  Similarity=0.363  Sum_probs=20.5

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhh
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKC   53 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~   53 (290)
                      .-|+-||+++|||++.+|..|.|||.++......+.++-+
T Consensus        61 ~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~L  100 (154)
T d1dcqa1          61 LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL  100 (154)
T ss_dssp             HHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCChhhhhhhhccccccccccccccccccc
Confidence            3455555566666666666666666555333333333333

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.47  E-value=0.015  Score=50.56  Aligned_cols=44  Identities=23%  Similarity=0.314  Sum_probs=34.7

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCC---CchhHHHHHhhhhccc
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCP---DPNLCKALTKCYKDKE   58 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~---d~~~~~~l~~~~~~~~   58 (290)
                      .++-+|+++|||++++|..|+|||+++.   ...++++|..+.++..
T Consensus       344 ~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~~~~~~~  390 (408)
T d1n11a_         344 DIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETS  390 (408)
T ss_dssp             HHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHCCCCS
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHHHhccc
Confidence            5678999999999999999999999993   3455666766665443

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.26  E-value=0.016  Score=43.79  Aligned_cols=43  Identities=14%  Similarity=0.052  Sum_probs=33.9

Q ss_pred             HHHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970          13 SASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD   56 (290)
Q Consensus        13 ~~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~   56 (290)
                      .+-++-+|+++|||++.+|..|.|||.++... ..+.++.+.++
T Consensus        13 ~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~~~-~~ei~~~Ll~~   55 (156)
T d1ihba_          13 DLEQLTSLLQNNVNVNAQNGFGRTALQVMKLG-NPEIARRLLLR   55 (156)
T ss_dssp             CHHHHHHHTTSCCCTTCCCTTSCCHHHHCCSS-CHHHHHHHHHT
T ss_pred             CHHHHHHHHHCCCCcCccCCcccccccccccc-ccccccccccc
Confidence            34788999999999999999999999998643 34555555544

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.02  E-value=0.0077  Score=44.99  Aligned_cols=28  Identities=18%  Similarity=0.211  Sum_probs=15.1

Q ss_pred             HHHHHHHhCCCCCcccccCCC-CCCCCCC
Q psy7970          15 SIACFLAGNGADLSIKNKKGQ-TPLDLCP   42 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~-tpldl~~   42 (290)
                      .++-+|++.|||++.+|..|. +||.++.
T Consensus        49 ~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~   77 (125)
T d1bi7b_          49 RVAELLLLHGAEPNCADPATLTRPVHDAA   77 (125)
T ss_dssp             HHHHHHHTTTCCCCCCCTTTCCCHHHHHH
T ss_pred             ccccccccccccccccccccccccccccc
Confidence            455555555555555555554 3555553

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.74  E-value=0.011  Score=46.28  Aligned_cols=40  Identities=28%  Similarity=0.393  Sum_probs=31.7

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCC---chhHHHHHhhh
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPD---PNLCKALTKCY   54 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d---~~~~~~l~~~~   54 (290)
                      .++-+|++.|||++++|..|+|||+++..   ..+.+.|.+..
T Consensus        95 ~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~  137 (154)
T d1dcqa1          95 ECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQAL  137 (154)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence            67889999999999999999999999843   34445555443

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.63  E-value=0.024  Score=40.46  Aligned_cols=40  Identities=15%  Similarity=0.394  Sum_probs=28.4

Q ss_pred             ccccccccccCC--c-eEEeCCCCeecchhhHhc------------CCCCCCCCcc
Q psy7970         125 IEECMVCSLKKA--S-VLFKPCYHMVACESCASL------------MKKCVQCRTQ  165 (290)
Q Consensus       125 i~~C~~C~~~~~--~-~~~~PCgH~~~C~~Ca~~------------~~~Cp~Cr~~  165 (290)
                      ..+|.||++...  + +.+.+|||. +|..|...            .-+||.|+-+
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~   59 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACP   59 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCS
T ss_pred             CCcCccCCCcccCCceEEECCCCCE-eCCcCHHHHHHHHHhcCCccccCCcCCCCC
Confidence            468999987643  3 456689998 99999842            1269986643

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.56  E-value=0.012  Score=44.39  Aligned_cols=34  Identities=24%  Similarity=0.277  Sum_probs=23.6

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHH
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCK   48 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~   48 (290)
                      .++-+|++.|||++.+|.+|.|||+++..-...+
T Consensus       114 ~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~e  147 (153)
T d1awcb_         114 EVVELLIKYGADVHTQSKFCKTAFDISIDNGNED  147 (153)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             heeeeccccccCCcccCCCCCCHHHHHHHcCCHH
Confidence            5667777777777777777777777774444333

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.42  E-value=0.0097  Score=44.78  Aligned_cols=42  Identities=14%  Similarity=0.032  Sum_probs=32.2

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYK   55 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~   55 (290)
                      +.++-+|+++|+|++++|..|.|||.++...+..+.+.-+.+
T Consensus        14 ~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~   55 (130)
T d1ycsb1          14 FDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQ   55 (130)
T ss_dssp             HHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCccccccccccccccccccccccccccccc
Confidence            467889999999999999999999998855544444444443

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.64  E-value=0.022  Score=41.93  Aligned_cols=31  Identities=19%  Similarity=0.240  Sum_probs=22.8

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCc
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDP   44 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~   44 (290)
                      ..++-+|+++|+|++.+|..|.|||.++..-
T Consensus        15 ~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~   45 (118)
T d1myoa_          15 LDEVKDYVAKGEDVNRTLEGGRKPLHYAADC   45 (118)
T ss_dssp             HHHHHHHHTTTCCCCCCSSSSCCTTHHHHHH
T ss_pred             HHHHHHHHHhhhccccccccccccccccccc
Confidence            3567778888888888888888888877333

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.24  E-value=0.13  Score=37.71  Aligned_cols=42  Identities=14%  Similarity=0.104  Sum_probs=33.3

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD   56 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~   56 (290)
                      ..++-+|++.|||++.+|..|.|||.++... ..+.++-+.+.
T Consensus        16 ~~~v~~Ll~~gad~n~~~~~g~t~l~~a~~g-~~~~v~~Ll~~   57 (125)
T d1bi7b_          16 VEEVRALLEAGANPNAPNSYGRRPIQVMMMG-SARVAELLLLH   57 (125)
T ss_dssp             HHHHHHHHTTTCCTTCCCSSSCCTTTSSCTT-CHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCccccccccccccccccccc-ccccccccccc
Confidence            4788999999999999999999999988643 34555555543

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.86  E-value=0.035  Score=45.13  Aligned_cols=41  Identities=22%  Similarity=0.083  Sum_probs=31.6

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYK   55 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~   55 (290)
                      -++-||+++|||++.+|..|.|||+++..-+-.+.++-+.+
T Consensus       206 ~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~  246 (255)
T d1oy3d_         206 SVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRA  246 (255)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            67889999999999999999999999844444444444443

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.35  E-value=0.026  Score=43.00  Aligned_cols=27  Identities=26%  Similarity=0.507  Sum_probs=17.7

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCC
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLC   41 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~   41 (290)
                      .++-+|++.|+|++.+|..|.|||.++
T Consensus        82 ~~~~~~l~~~~~~n~~~~~~~t~L~~A  108 (156)
T d1bd8a_          82 DTLKVLVEHGADVNVPDGTGALPIHLA  108 (156)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHH
T ss_pred             cccccccccccccccccCCCCeeeccc
Confidence            455666666666666666666666666

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.87  E-value=0.061  Score=43.59  Aligned_cols=42  Identities=21%  Similarity=0.185  Sum_probs=30.5

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhh
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYK   55 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~   55 (290)
                      ..++-+|+++|||++..|.+|+|||+++........+..+.+
T Consensus        58 ~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~   99 (255)
T d1oy3d_          58 ASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ   99 (255)
T ss_dssp             HHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSS
T ss_pred             cccccccccccccccccccccchhhhhhhccCchHHHHHHHh
Confidence            367778888888888888888888888765555555554443

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.68  E-value=0.029  Score=46.02  Aligned_cols=39  Identities=21%  Similarity=0.123  Sum_probs=28.5

Q ss_pred             HHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970          18 CFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD   56 (290)
Q Consensus        18 cfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~   56 (290)
                      -.|+++|||++.+|..|.|||.++..-+..+.++-+.+.
T Consensus        58 ~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~   96 (277)
T d2fo1e1          58 KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKA   96 (277)
T ss_dssp             HHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             hHHHHcCCCccccCCCCCeeecccccccccccccccccc
Confidence            456788999999999999999988555555555555543

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.47  E-value=0.032  Score=41.72  Aligned_cols=42  Identities=21%  Similarity=0.268  Sum_probs=33.3

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD   56 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~   56 (290)
                      .++-+|++.|+|++.+|.+|.|||.++..-+-.+.++-+.++
T Consensus        48 ~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~   89 (130)
T d1ycsb1          48 EIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES   89 (130)
T ss_dssp             HHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccccccccccccccccccCcccccccchhhHHHHHHHHHHc
Confidence            677899999999999999999999999555445555555544

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=89.15  E-value=0.035  Score=46.10  Aligned_cols=42  Identities=19%  Similarity=0.129  Sum_probs=33.1

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD   56 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~   56 (290)
                      -++-+|+++|||++.+|..|.|||+++.-....+.+.-+.+.
T Consensus        54 ~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~   95 (291)
T d1s70b_          54 EEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVEN   95 (291)
T ss_dssp             HHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeeccc
Confidence            467899999999999999999999999655555555555543

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.89  E-value=0.064  Score=45.56  Aligned_cols=28  Identities=14%  Similarity=0.171  Sum_probs=25.5

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCC
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCP   42 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~   42 (290)
                      .++-+|++.|||++.+|..|+|||.++.
T Consensus       121 ~~v~~Ll~~gad~~~~d~~G~TpL~~A~  148 (301)
T d1sw6a_         121 ELVKHLVKHGSNRLYGDNMGESCLVKAV  148 (301)
T ss_dssp             HHHHHHHHTTCCTTBCCTTCCCHHHHHH
T ss_pred             HHHHHHHHCCCCCCcCCcccccHHHHhh
Confidence            5889999999999999999999998763

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.67  E-value=0.11  Score=39.85  Aligned_cols=39  Identities=26%  Similarity=0.279  Sum_probs=29.3

Q ss_pred             HHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970          18 CFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCYKD   56 (290)
Q Consensus        18 cfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~~~   56 (290)
                      -.|.++|||++.+|..|.|||.++..-+..+.+..+.+.
T Consensus        24 ~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~   62 (228)
T d1k1aa_          24 NLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA   62 (228)
T ss_dssp             HHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHCCCCCCccCCCCCccceehhcccccccccccccc
Confidence            344579999999999999999998655555555555543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=83.78  E-value=0.019  Score=45.29  Aligned_cols=43  Identities=26%  Similarity=0.326  Sum_probs=33.8

Q ss_pred             HHHHHHHHhCCCCCcc-cccCCCCCCCCCCCchhHHHHHhhhhc
Q psy7970          14 ASIACFLAGNGADLSI-KNKKGQTPLDLCPDPNLCKALTKCYKD   56 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~-~n~~g~tpldl~~d~~~~~~l~~~~~~   56 (290)
                      +-|.-+|+++|+|++. .|.+|.|||.++..-+..+.+..+.+.
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~   45 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDA   45 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            4578899999999987 599999999999666666666555543

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.57  E-value=0.13  Score=41.93  Aligned_cols=40  Identities=25%  Similarity=0.487  Sum_probs=24.6

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhh
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCY   54 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~   54 (290)
                      .|+-||++.|||++.+|..|.|||..+......+.++.+.
T Consensus       200 ~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL  239 (285)
T d1wdya_         200 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL  239 (285)
T ss_dssp             HHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHH
Confidence            5666677777777766777777766664444444444444

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.35  E-value=0.13  Score=41.19  Aligned_cols=41  Identities=27%  Similarity=0.337  Sum_probs=31.5

Q ss_pred             HHHHHHHHhCCCCCcccccCCCCCCCCCCCchhHHHHHhhh
Q psy7970          14 ASIACFLAGNGADLSIKNKKGQTPLDLCPDPNLCKALTKCY   54 (290)
Q Consensus        14 ~aiacfL~~~Gadl~~~n~~g~tpldl~~d~~~~~~l~~~~   54 (290)
                      ..++-||+++|+|++.+|..|+|||.++......+.+.-+.
T Consensus        83 ~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll  123 (223)
T d1uoha_          83 DEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL  123 (223)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             cchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHH
Confidence            47889999999999999999999999984433334444444

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.72  E-value=0.14  Score=44.05  Aligned_cols=26  Identities=38%  Similarity=0.514  Sum_probs=12.9

Q ss_pred             HHHHHHhCCCCCcccccCCCCCCCCC
Q psy7970          16 IACFLAGNGADLSIKNKKGQTPLDLC   41 (290)
Q Consensus        16 iacfL~~~Gadl~~~n~~g~tpldl~   41 (290)
                      ++-||+++|||++++|.+|+|||.++
T Consensus        48 iv~~Ll~~gadi~~~~~~g~t~L~~A   73 (408)
T d1n11a_          48 VAKYLLQNKAKVNAKAKDDQTPLHCA   73 (408)
T ss_dssp             HHHHHHHHTCCSSCCCTTSCCHHHHH
T ss_pred             HHHHHHHCcCCCCCCCCCCCCHHHHH
Confidence            44445555555555555555555444

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=82.24  E-value=0.15  Score=41.37  Aligned_cols=31  Identities=26%  Similarity=0.402  Sum_probs=26.7

Q ss_pred             HHHHHHHhCCCCCcccccCCCCCCCCCCCch
Q psy7970          15 SIACFLAGNGADLSIKNKKGQTPLDLCPDPN   45 (290)
Q Consensus        15 aiacfL~~~Gadl~~~n~~g~tpldl~~d~~   45 (290)
                      .++-||+++|||++.+|..|+|||.++....
T Consensus        88 ~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~  118 (277)
T d2fo1e1          88 RLVAYLMKAGADPTIYNKSERSALHQAAANR  118 (277)
T ss_dssp             HHHHHHHHTTCCSCCCCTTCCCHHHHHHHTT
T ss_pred             cccccccccccccccccccccccccchhhhc
Confidence            4778999999999999999999999874433

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.67  E-value=0.13  Score=38.40  Aligned_cols=27  Identities=33%  Similarity=0.532  Sum_probs=16.4

Q ss_pred             HHHHHHHhCCC-CCcccccCCCCCCCCC
Q psy7970          15 SIACFLAGNGA-DLSIKNKKGQTPLDLC   41 (290)
Q Consensus        15 aiacfL~~~Ga-dl~~~n~~g~tpldl~   41 (290)
                      .++-+|+..|+ |++.+|..|+|||+++
T Consensus       113 ~~~~~Ll~~~~~~~~~~d~~g~TpL~~A  140 (156)
T d1ihba_         113 RVVEFLVKHTASNVGHRNHKGDTACDLA  140 (156)
T ss_dssp             HHHHHHHHHSCCCTTCCCTTSCCHHHHH
T ss_pred             cccccccccccccccccCCCCCCHHHHH
Confidence            34455555555 6666666666666665