Psyllid ID: psy7973

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
Protein Sequence
MSQSANIIKQNGVCHQAKDKYPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSLGT
Secondary Structure (PSIPRED)
cccHHHHHHHccccHHHcccccEEEEEEEEEcccccccccccccccccccccccccccccccEEEEEEEEccccEEEEEEEEEEccccccccEEEEEEEEcccccccccccEEEEEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHccccHHcccccccEEEEEEEEcccccccHHHccccEEEcHHHccccccccccEEEEEEEEEccccccEEEEEEEEEccccccccEEEEEEEcccccccccccEEEEEEEEEEEcccccccHcc
Coil and Loop (DISEMBL)
msqsaniikqngvchqakdkypyftkgiivkgfgrgskelgiptaNMCDEAVkslpesfdpgvyygwsklsdgptVYKMVMSIgwnpfyknkkksMEVHIIHEFGRDLYDLTLSICVLgyirpeldfnslgt
Flexible Loop (DISEMBL)
msqsaniikqngvchqakdkypYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRpeldfnslgt
Low Complexity Region (SEG)
MSQSANIIKQNGVCHQAKDKYPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSLGT
Disordered region (IsUnstruct)
******IIKQNGVCHQAKDKYPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDF*****
Disordered Region (DISOPRED)
*SQSANIIKQNGVCHQAKDKYPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFN*LG*
Disordered Region (DISEMBL)
********KQNGVCHQAKDKYPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSLGT
Disordered Region (DISPRO)
*SQSANIIKQNGVCHQAKDKYPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELD******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSQSANIIKQNGVCHQAKDKYPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSLGT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	132	2.2.26 [Sep-21-2011]
O76206	153	Putative riboflavin kinas	yes	N/A	0.833	0.718	0.630	2e-36
Q969G6	155	Riboflavin kinase OS=Homo	yes	N/A	0.818	0.696	0.559	6e-33
Q8CFV9	155	Riboflavin kinase OS=Mus	yes	N/A	0.818	0.696	0.559	1e-32
O74866	163	Riboflavin kinase OS=Schi	yes	N/A	0.863	0.699	0.491	4e-28
A5E1A0	182	Riboflavin kinase OS=Lodd	N/A	N/A	0.856	0.620	0.417	2e-24
A4QQ05	200	Riboflavin kinase OS=Magn	N/A	N/A	0.833	0.55	0.448	2e-23
A5DAH9	180	Riboflavin kinase OS=Meye	N/A	N/A	0.803	0.588	0.433	6e-23
P0C5D9	235	Riboflavin kinase OS=Chae	N/A	N/A	0.833	0.468	0.375	2e-22
Q6CG11	192	Riboflavin kinase OS=Yarr	yes	N/A	0.856	0.588	0.395	4e-22
Q6CT57	185	Riboflavin kinase OS=Kluy	yes	N/A	0.765	0.545	0.403	1e-21

>sp|O76206|RIFK_DROME Putative riboflavin kinase OS=Drosophila melanogaster GN=anon-84Ea PE=2 SV=1

 Score =  150 bits (380), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/111 (63%), Positives = 86/111 (77%), Gaps = 1/111 (0%)

Query: 20  KYPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKM 79
           + P F  G IV+GFGRGSKELGIPTAN   E VKSLPES   G YYGW+ + +GP V+KM
Sbjct: 4   QLPLFAGGEIVRGFGRGSKELGIPTANFPLEVVKSLPESLPTGAYYGWANVDNGP-VHKM 62

Query: 80  VMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
           V+SIGWNPFY NK+KS+E H++H+F  DLY  TL IC++GY+RPE  F+SL
Sbjct: 63  VLSIGWNPFYNNKEKSVETHMLHDFNCDLYGQTLKICIVGYLRPERSFDSL 113

Catalyzes the phosphorylation of riboflavin (vitamin B2) to form flavin-mononucleotide (FMN).
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 2EC: 6

>sp|Q969G6|RIFK_HUMAN Riboflavin kinase OS=Homo sapiens GN=RFK PE=1 SV=2

 Score =  139 bits (350), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 61/109 (55%), Positives = 82/109 (75%), Gaps = 1/109 (0%)

Query: 22  PYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVM 81
           PYF +G +V+GFGRGSK+LGIPTAN  ++ V +LP     G+YYGW+ +  G  V+KMV+
Sbjct: 5   PYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADISTGIYYGWASVGSG-DVHKMVV 63

Query: 82  SIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
           SIGWNP+YKN KKSME HI+H F  D Y   L++ ++GY+RPE +F+SL
Sbjct: 64  SIGWNPYYKNTKKSMETHIMHTFKEDFYGEILNVAIVGYLRPEKNFDSL 112

Catalyzes the phosphorylation of riboflavin (vitamin B2) to form flavin-mononucleotide (FMN).

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q8CFV9|RIFK_MOUSE Riboflavin kinase OS=Mus musculus GN=Rfk PE=2 SV=2

 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 61/109 (55%), Positives = 82/109 (75%), Gaps = 1/109 (0%)

Query: 22  PYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVM 81
           P+F +G +V+GFGRGSK+LGIPTAN  ++ V +LP     G+YYGW+ +  G  V+KMV+
Sbjct: 5   PFFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADVSTGIYYGWASVGSG-DVHKMVV 63

Query: 82  SIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
           SIGWNP+YKN KKSME HIIH F  D Y   L++ ++GY+RPE +F+SL
Sbjct: 64  SIGWNPYYKNVKKSMETHIIHTFKEDFYGEILNVAIVGYLRPEKNFDSL 112

Catalyzes the phosphorylation of riboflavin (vitamin B2) to form flavin-mononucleotide (FMN).

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|O74866|RIFK_SCHPO Riboflavin kinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fmn1 PE=1 SV=1

 Score =  123 bits (308), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 57/116 (49%), Positives = 80/116 (68%), Gaps = 2/116 (1%)

Query: 15  HQAKDKYPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGP 74
            + +  YP   +G +V GFGRGSKELGIPTAN+ ++A++ L    D GVY+G++ +    
Sbjct: 16  EKVQSPYPIRFEGKVVHGFGRGSKELGIPTANISEDAIQELLRYRDSGVYFGYAMVQK-- 73

Query: 75  TVYKMVMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
            V+ MVMS+GWNP+YKNK +S EVH+I   G D Y+  + + VLGYIRPEL++  L
Sbjct: 74  RVFPMVMSVGWNPYYKNKLRSAEVHLIERQGEDFYEEIMRVIVLGYIRPELNYAGL 129

Catalyzes the phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN) coenzyme.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|A5E1A0|RIFK_LODEL Riboflavin kinase OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=FMN1 PE=3 SV=1

 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/146 (41%), Positives = 79/146 (54%), Gaps = 33/146 (22%)

Query: 13  VCHQAKDKYPYFTKGIIVKGFGRGSKELGIPTANM-CDEAVKSLPESFDPGVYYGWSKL- 70
           +  +    YP  T   I+ GFGRGS ELGIPTAN+  +  + SLP     G+YYGW K+ 
Sbjct: 8   IPEKPTSPYPIHTTAPIISGFGRGSSELGIPTANIPINAQLNSLPT----GIYYGWCKIH 63

Query: 71  ------------SDGP---------------TVYKMVMSIGWNPFYKNKKKSMEVHIIHE 103
                        DG                 V+ MVMSIGWNPFY+NK+K+ E+HI+ +
Sbjct: 64  PVSDQNDETRTRPDGQLILFNHGNKLQANELVVHPMVMSIGWNPFYQNKEKAAEIHIMSK 123

Query: 104 FGRDLYDLTLSICVLGYIRPELDFNS 129
           F RD Y   L   VLGY+RPELD+ +
Sbjct: 124 FERDFYGAELEFIVLGYVRPELDYTT 149

Catalyzes the phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN) coenzyme.

Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) (taxid: 379508)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|A4QQ05|RIFK_MAGO7 Riboflavin kinase OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=FMN1 PE=3 SV=3

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/125 (44%), Positives = 76/125 (60%), Gaps = 15/125 (12%)

Query: 21  YPYFTKGIIVKGFGRGSKELGIPTANM-CDEAVKSLPESFDPGVYYGWSKLS-------- 71
           +PY  +G ++ GFGRGSKELGIPTAN+  D  +     S   GVYYGW+ L         
Sbjct: 19  FPYKMEGKVISGFGRGSKELGIPTANLPVDATISPWISSISSGVYYGWASLQLPPSHPES 78

Query: 72  ------DGPTVYKMVMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPEL 125
                     V+ MVMSIG+NPFY N ++S EVHI+H+F  D YD  + + +LG+IR E 
Sbjct: 79  PSSSSCSPYVVFPMVMSIGYNPFYNNTERSAEVHILHKFTADFYDAPMRLLILGFIRDEK 138

Query: 126 DFNSL 130
           +++SL
Sbjct: 139 NYDSL 143

Catalyzes the phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN) coenzyme.

Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (taxid: 242507)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|A5DAH9|RIFK_PICGU Riboflavin kinase OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=FMN1 PE=3 SV=2

 Score =  105 bits (263), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 59/136 (43%), Positives = 72/136 (52%), Gaps = 30/136 (22%)

Query: 21  YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKL---------- 70
           YP    G I  GFGRGS ELGIPTAN+    V S     + G+YYGW +L          
Sbjct: 17  YPIIGAGTIESGFGRGSAELGIPTANI---PVTSELNKLETGIYYGWCRLVPRNQECAAK 73

Query: 71  --SDGPTVY---------------KMVMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTL 113
             SDG  VY                M MSIGWNPFY N+ K+ EVHIIH+F  + Y   L
Sbjct: 74  QRSDGKKVYFNNGTKLADDELETFPMAMSIGWNPFYNNETKTAEVHIIHKFRENFYGADL 133

Query: 114 SICVLGYIRPELDFNS 129
              V+G+IRPEL++ +
Sbjct: 134 RYAVMGHIRPELNYTT 149

Catalyzes the phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN) coenzyme.

Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) (taxid: 294746)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|P0C5D9|RIFK_CHAGB Riboflavin kinase OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=FMN1 PE=3 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/152 (37%), Positives = 78/152 (51%), Gaps = 42/152 (27%)

Query: 21  YPYFTKGIIVKGFGRGSKELGIPTANM-CDEAVKSLPESFDPGVYYGWSKLS-------- 71
           YP+   G+++ GFGRGSKELGIPTAN+  D+A      S   GVY+GW+ L+        
Sbjct: 22  YPFRMSGLVISGFGRGSKELGIPTANLPVDDAQTPWISSIPSGVYFGWASLNLPASHPDS 81

Query: 72  ---------------------------------DGPTVYKMVMSIGWNPFYKNKKKSMEV 98
                                            +G  VY MVMSIG+NPFYKN  +S EV
Sbjct: 82  LTSSAAAAAAAAAAAAAPGEDGGGAGEQRQRGGNGFAVYPMVMSIGYNPFYKNTVRSAEV 141

Query: 99  HIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
           H++H FG D Y + + + + G+IR E D++ L
Sbjct: 142 HVLHRFGADFYGVEMRLLIAGFIREEKDYSGL 173

Catalyzes the phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN) coenzyme.

Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) (taxid: 306901)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q6CG11|RIFK_YARLI Riboflavin kinase OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=FMN1 PE=3 SV=1

 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 57/144 (39%), Positives = 78/144 (54%), Gaps = 31/144 (21%)

Query: 17  AKDKYPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKL--SDGP 74
           A   YP      I+ G+GRGS +LGIPTAN+  + V  L ++ D G+YYG  ++  +D P
Sbjct: 20  ASTAYPIKFASSIIPGYGRGSADLGIPTANIPIDDVPVL-DALDTGIYYGLVQILKTDKP 78

Query: 75  T----------------------------VYKMVMSIGWNPFYKNKKKSMEVHIIHEFGR 106
           +                            V  MVMS+GWNPFYKN +KS E+HIIH+F  
Sbjct: 79  SEKKTSEFQKDRVVDFQYTNKLNDQEINAVLPMVMSVGWNPFYKNDQKSAEIHIIHKFAH 138

Query: 107 DLYDLTLSICVLGYIRPELDFNSL 130
             Y  ++ + VLGY+RPE +F SL
Sbjct: 139 TFYGASIKVMVLGYLRPEKNFTSL 162

Catalyzes the phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN) coenzyme.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q6CT57|RIFK_KLULA Riboflavin kinase OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=FMN1 PE=3 SV=1

 Score =  101 bits (252), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/129 (40%), Positives = 72/129 (55%), Gaps = 28/129 (21%)

Query: 29  IVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLS-------------DGP- 74
           ++ GFGRGS ELGIPTAN+  + +  + E  D GVY+GW K+              DG  
Sbjct: 26  VIAGFGRGSAELGIPTANVPIDDLPKIVEQLDTGVYFGWCKVRMAKDRDTKVEQRPDGRE 85

Query: 75  --------------TVYKMVMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGY 120
                          V  +V+S+GWNPFY+NK K++E+HIIH+F  + Y   +    LGY
Sbjct: 86  VQYNNGTLLNDEDLAVLPVVLSVGWNPFYQNKNKTVELHIIHKFSDNFYGAQIKFNFLGY 145

Query: 121 IRPELDFNS 129
           IRPELD+ +
Sbjct: 146 IRPELDYTT 154

Catalyzes the phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN) coenzyme.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 2

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
195110613	149	GI22835 [Drosophila mojavensis] gi|19391	0.833	0.738	0.639	1e-35
156546795	148	PREDICTED: riboflavin kinase-like isofor	0.848	0.756	0.596	9e-35
242018566	152	Riboflavin kinase, putative [Pediculus h	0.833	0.723	0.576	9e-35
195392385	152	GJ24661 [Drosophila virilis] gi|19415292	0.833	0.723	0.621	1e-34
148228987	154	riboflavin kinase [Xenopus laevis] gi|50	0.818	0.701	0.651	1e-34
24644927	153	CG2846 [Drosophila melanogaster] gi|4101	0.833	0.718	0.630	1e-34
221105666	159	PREDICTED: riboflavin kinase-like [Hydra	0.818	0.679	0.633	2e-34
195569071	153	GD19451 [Drosophila simulans] gi|1941984	0.833	0.718	0.621	2e-34
16768454	153	GM04958p [Drosophila melanogaster]	0.833	0.718	0.621	2e-34
195344336	153	GM10446 [Drosophila sechellia] gi|194133	0.833	0.718	0.612	2e-34

>gi|195110613|ref|XP_001999874.1| GI22835 [Drosophila mojavensis] gi|193916468|gb|EDW15335.1| GI22835 [Drosophila mojavensis]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/111 (63%), Positives = 87/111 (78%), Gaps = 1/111 (0%)

Query: 20  KYPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKM 79
           K P +  G IV+GFGRGSKELGIPTAN   + VKSLPES   GVYYGW+K++D   VYKM
Sbjct: 4   KLPIYVSGEIVRGFGRGSKELGIPTANFSLDVVKSLPESLQTGVYYGWAKVNDS-EVYKM 62

Query: 80  VMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
           V+S+GWNPFY NK+KS+E HI+H+F  DLY  TL IC++GY+RPE +F SL
Sbjct: 63  VLSVGWNPFYNNKEKSLETHIMHKFNCDLYGRTLRICIVGYLRPEQNFKSL 113

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156546795|ref|XP_001605830.1| PREDICTED: riboflavin kinase-like isoform 1 [Nasonia vitripennis] gi|345483120|ref|XP_003424745.1| PREDICTED: riboflavin kinase-like isoform 2 [Nasonia vitripennis]

 Score =  151 bits (381), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 68/114 (59%), Positives = 87/114 (76%), Gaps = 2/114 (1%)

Query: 17  AKDKYPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTV 76
           +KD  PY+  G +V GFGRGSK LG PTAN+ +E V++LP  F+ G+YYGW+ L    T+
Sbjct: 3   SKDYLPYYAAGEVVSGFGRGSKSLGCPTANLSEEIVEALPSEFETGIYYGWASLE--KTI 60

Query: 77  YKMVMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
           YKMVMSIGWNPFYKN KKSME+H++H+F  D Y   L + VLGYIRPEL+F+S+
Sbjct: 61  YKMVMSIGWNPFYKNDKKSMEIHLLHKFEDDFYGKELKVIVLGYIRPELNFSSV 114

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018566|ref|XP_002429745.1| Riboflavin kinase, putative [Pediculus humanus corporis] gi|212514757|gb|EEB17007.1| Riboflavin kinase, putative [Pediculus humanus corporis]

 Score =  151 bits (381), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 64/111 (57%), Positives = 88/111 (79%), Gaps = 1/111 (0%)

Query: 22  PYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVM 81
           PY+ + +++KGFGRGSKELG+PTAN+  + V  LP   D GVY+GW+K+ + P VYKMVM
Sbjct: 7   PYYARDVVIKGFGRGSKELGVPTANLPSQTVNKLPPELDTGVYFGWAKVENSP-VYKMVM 65

Query: 82  SIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSLGT 132
           SIGWNPFYKNK+KSME+HI+H F  D Y   LS+ ++G+IRPE+DF+++ +
Sbjct: 66  SIGWNPFYKNKEKSMEIHILHLFENDFYGCMLSVAIVGFIRPEMDFDNVES 116

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195392385|ref|XP_002054838.1| GJ24661 [Drosophila virilis] gi|194152924|gb|EDW68358.1| GJ24661 [Drosophila virilis]

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 69/111 (62%), Positives = 89/111 (80%), Gaps = 1/111 (0%)

Query: 20  KYPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKM 79
           + P +  G IV+GFGRGSKELGIPTAN+  + VKSLPES   GVYYGWS +++G  VYKM
Sbjct: 4   QLPIYASGEIVRGFGRGSKELGIPTANLSLDVVKSLPESLHTGVYYGWSNVNNG-EVYKM 62

Query: 80  VMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
           V+S+GWNPFY NK+KS+E H++H+F  DLY  TL IC++GY+RPE +F+SL
Sbjct: 63  VLSVGWNPFYNNKEKSVETHMLHKFDCDLYGQTLKICIVGYLRPEKNFDSL 113

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|148228987|ref|NP_001087452.1| riboflavin kinase [Xenopus laevis] gi|50927273|gb|AAH79807.1| MGC86418 protein [Xenopus laevis]

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 71/109 (65%), Positives = 82/109 (75%), Gaps = 1/109 (0%)

Query: 22  PYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVM 81
           PYF +G +VKGFGRGSKELGIPTAN  ++ V  LP     G+YYGW ++ +G  VYKMVM
Sbjct: 5   PYFCRGEVVKGFGRGSKELGIPTANFAEKIVDRLPADISTGIYYGWGQVGNG-EVYKMVM 63

Query: 82  SIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
           SIGWNPFYKN KKSME HIIHEF +D Y   LSI + GYIRPE  F+SL
Sbjct: 64  SIGWNPFYKNTKKSMETHIIHEFDKDFYGEILSIVIAGYIRPEKSFDSL 112

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|24644927|ref|NP_649749.2| CG2846 [Drosophila melanogaster] gi|41017592|sp|O76206.1|RIFK_DROME RecName: Full=Putative riboflavin kinase; AltName: Full=ATP:riboflavin 5'-phosphotransferase; AltName: Full=Flavokinase gi|3213202|gb|AAC39087.1| similar to C. elegans R10H10.6 and S. cerevisiae YD8419.03c [Drosophila melanogaster] gi|7298960|gb|AAF54164.1| CG2846 [Drosophila melanogaster] gi|17945940|gb|AAL49015.1| RE45482p [Drosophila melanogaster] gi|211938651|gb|ACJ13222.1| FI08805p [Drosophila melanogaster] gi|220949082|gb|ACL87084.1| CG2846-PA [synthetic construct] gi|220958164|gb|ACL91625.1| CG2846-PA [synthetic construct]

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/111 (63%), Positives = 86/111 (77%), Gaps = 1/111 (0%)

Query: 20  KYPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKM 79
           + P F  G IV+GFGRGSKELGIPTAN   E VKSLPES   G YYGW+ + +GP V+KM
Sbjct: 4   QLPLFAGGEIVRGFGRGSKELGIPTANFPLEVVKSLPESLPTGAYYGWANVDNGP-VHKM 62

Query: 80  VMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
           V+SIGWNPFY NK+KS+E H++H+F  DLY  TL IC++GY+RPE  F+SL
Sbjct: 63  VLSIGWNPFYNNKEKSVETHMLHDFNCDLYGQTLKICIVGYLRPERSFDSL 113

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221105666|ref|XP_002163807.1| PREDICTED: riboflavin kinase-like [Hydra magnipapillata]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/109 (63%), Positives = 83/109 (76%), Gaps = 1/109 (0%)

Query: 22  PYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVM 81
           P+  +G +VKGFGRGSKELGIPTAN  +  VK +P     GVYYGWS++ +G  +YKMV+
Sbjct: 16  PFMVQGEVVKGFGRGSKELGIPTANFPEIVVKDIPSELSAGVYYGWSRVDNGE-IYKMVL 74

Query: 82  SIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
           SIGWNPFYKN+KKSME HI+HEF  D Y  TL I + GYIRPEL+F SL
Sbjct: 75  SIGWNPFYKNEKKSMETHILHEFDSDFYGSTLRIVMTGYIRPELNFGSL 123

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|195569071|ref|XP_002102535.1| GD19451 [Drosophila simulans] gi|194198462|gb|EDX12038.1| GD19451 [Drosophila simulans]

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/111 (62%), Positives = 86/111 (77%), Gaps = 1/111 (0%)

Query: 20  KYPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKM 79
           + P F  G IV+GFGRGSKELGIPTAN   E VKSLPES   G YYGW+ + +GP V+KM
Sbjct: 4   QLPLFAGGEIVRGFGRGSKELGIPTANFPLEVVKSLPESLPTGAYYGWANVDNGP-VHKM 62

Query: 80  VMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
           V+S+GWNPFY NK+KS+E H++H+F  DLY  TL IC++GY+RPE  F+SL
Sbjct: 63  VLSVGWNPFYNNKEKSVETHMLHDFNCDLYGQTLKICIVGYLRPERSFDSL 113

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|16768454|gb|AAL28446.1| GM04958p [Drosophila melanogaster]

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/111 (62%), Positives = 86/111 (77%), Gaps = 1/111 (0%)

Query: 20  KYPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKM 79
           + P F  G IV+GFGRGSKE+GIPTAN   E VKSLPES   G YYGW+ + +GP V+KM
Sbjct: 4   QLPLFAGGEIVRGFGRGSKEMGIPTANFPLEVVKSLPESLPTGAYYGWANVDNGP-VHKM 62

Query: 80  VMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
           V+SIGWNPFY NK+KS+E H++H+F  DLY  TL IC++GY+RPE  F+SL
Sbjct: 63  VLSIGWNPFYNNKEKSVETHMLHDFNCDLYGQTLKICIVGYLRPERSFDSL 113

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195344336|ref|XP_002038744.1| GM10446 [Drosophila sechellia] gi|194133765|gb|EDW55281.1| GM10446 [Drosophila sechellia]

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/111 (61%), Positives = 86/111 (77%), Gaps = 1/111 (0%)

Query: 20  KYPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKM 79
           + P F  G IV+GFGRGSKELGIPTAN   E VKSLPES   G YYGW+ + +GP V+KM
Sbjct: 4   QLPLFAGGEIVRGFGRGSKELGIPTANFPLEVVKSLPESLPTGAYYGWANVDNGP-VHKM 62

Query: 80  VMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
           V+S+GWNPFY NK++S+E H++H+F  DLY  TL IC++GY+RPE  F+SL
Sbjct: 63  VLSVGWNPFYNNKERSVETHMLHDFNCDLYGQTLKICIVGYLRPERSFDSL 113

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
FB|FBgn0014930	153	CG2846 [Drosophila melanogaste	0.818	0.705	0.642	1.5e-35
UNIPROTKB|F1NU60	168	LOC427259 "Uncharacterized pro	0.909	0.714	0.561	2.5e-33
ZFIN|ZDB-GENE-081104-321	163	rfk "riboflavin kinase" [Danio	0.818	0.662	0.596	2.5e-33
UNIPROTKB|J9NSA8	384	RFK "Uncharacterized protein"	0.871	0.299	0.543	1.1e-32
UNIPROTKB|J9P4I1	206	RFK "Uncharacterized protein"	0.818	0.524	0.568	1.4e-32
UNIPROTKB|Q3SZP4	234	RFK "Uncharacterized protein"	0.818	0.461	0.559	2.3e-32
UNIPROTKB|Q969G6	155	RFK "Riboflavin kinase" [Homo	0.818	0.696	0.559	2.3e-32
UNIPROTKB|F1SJ99	162	RFK "Uncharacterized protein"	0.818	0.666	0.559	2.9e-32
MGI|MGI:1914688	155	Rfk "riboflavin kinase" [Mus m	0.818	0.696	0.559	4.7e-32
RGD|1549748	155	Rfk "riboflavin kinase" [Rattu	0.818	0.696	0.559	4.7e-32

FB|FBgn0014930 CG2846 [Drosophila melanogaster (taxid:7227)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 70/109 (64%), Positives = 85/109 (77%)

Query:    22 PYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVM 81
             P F  G IV+GFGRGSKELGIPTAN   E VKSLPES   G YYGW+ + +GP V+KMV+
Sbjct:     6 PLFAGGEIVRGFGRGSKELGIPTANFPLEVVKSLPESLPTGAYYGWANVDNGP-VHKMVL 64

Query:    82 SIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
             SIGWNPFY NK+KS+E H++H+F  DLY  TL IC++GY+RPE  F+SL
Sbjct:    65 SIGWNPFYNNKEKSVETHMLHDFNCDLYGQTLKICIVGYLRPERSFDSL 113

GO:0009231 "riboflavin biosynthetic process" evidence=ISS

GO:0008531 "riboflavin kinase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

UNIPROTKB|F1NU60 LOC427259 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 68/121 (56%), Positives = 85/121 (70%)

Query:    12 GVCHQAKDKYPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLS 71
             G C  A    PYF +G +VKGFGRGS+ELG+PTAN  ++ V+S P     G+YYGW+ + 
Sbjct:    10 GRCAAAVRYLPYFCRGEVVKGFGRGSRELGVPTANFSEQVVESFPSDIPTGIYYGWASVG 69

Query:    72 DGPTVYKMVMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSLG 131
             +G  V+KMV+SIGWNPFYKN KKS+E HII+ F  D Y   LSI + GYIR E +FNSL 
Sbjct:    70 NGD-VHKMVLSIGWNPFYKNIKKSVETHIINTFKEDFYGEILSIVITGYIRSEKNFNSLE 128

Query:   132 T 132
             T
Sbjct:   129 T 129

GO:0008531 "riboflavin kinase activity" evidence=IEA

GO:0009231 "riboflavin biosynthetic process" evidence=IEA

ZFIN|ZDB-GENE-081104-321 rfk "riboflavin kinase" [Danio rerio (taxid:7955)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 65/109 (59%), Positives = 80/109 (73%)

Query:    22 PYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVM 81
             PYF +G +V+GFGRGSK+LGIPTAN  +  V SLP     G+YYGW++L +G  ++KMVM
Sbjct:     5 PYFFRGPVVRGFGRGSKDLGIPTANFPESVVDSLPTDISTGIYYGWARLDNGD-IHKMVM 63

Query:    82 SIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
             SIGWNP+YKN KKSME H+IH F  D Y   LS+ + GYIRPE  F SL
Sbjct:    64 SIGWNPYYKNTKKSMEAHVIHTFKEDFYGHILSVAMAGYIRPERGFTSL 112

GO:0008531 "riboflavin kinase activity" evidence=IEA

GO:0009231 "riboflavin biosynthetic process" evidence=IEA

UNIPROTKB|J9NSA8 RFK "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 63/116 (54%), Positives = 83/116 (71%)

Query:    15 HQAKDKYPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGP 74
             H      PYF +G +V+GFGRGSK+LGIPTAN  ++ V +LP     G+YYGW+ +  G 
Sbjct:   227 HGVMRHLPYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADVSTGIYYGWASVGSGD 286

Query:    75 TVYKMVMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
              V+KMV+SIGWNP+YKN KKSME HIIH F  D Y   L++ ++GY+RPE +F+SL
Sbjct:   287 -VHKMVVSIGWNPYYKNTKKSMETHIIHTFKEDFYGEILNVAIVGYLRPEKNFDSL 341

GO:0009231 "riboflavin biosynthetic process" evidence=IEA

GO:0008531 "riboflavin kinase activity" evidence=IEA

UNIPROTKB|J9P4I1 RFK "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 62/109 (56%), Positives = 82/109 (75%)

Query:    22 PYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVM 81
             PYF +G +V+GFGRGSK+LGIPTAN  ++ V +LP     G+YYGW+ +  G  V+KMV+
Sbjct:    57 PYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADVSTGIYYGWASVGSGD-VHKMVV 115

Query:    82 SIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
             SIGWNP+YKN KKSME HIIH F  D Y   L++ ++GY+RPE +F+SL
Sbjct:   116 SIGWNPYYKNTKKSMETHIIHTFKEDFYGEILNVAIVGYLRPEKNFDSL 164

GO:0009231 "riboflavin biosynthetic process" evidence=IEA

GO:0008531 "riboflavin kinase activity" evidence=IEA

UNIPROTKB|Q3SZP4 RFK "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 61/109 (55%), Positives = 82/109 (75%)

Query:    22 PYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVM 81
             PYF +G +V+GFGRGSK+LGIPTAN  ++ V +LP     G+YYGW+ + +G  V+KMV+
Sbjct:    84 PYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADISTGIYYGWASVGNGD-VHKMVV 142

Query:    82 SIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
             SIGWNP+YKN KKSME HI+H F  D Y   L + ++GY+RPE +F+SL
Sbjct:   143 SIGWNPYYKNTKKSMETHIMHTFKEDFYGEILKVAIVGYLRPEKNFDSL 191

GO:0005739 "mitochondrion" evidence=IEA

GO:0009231 "riboflavin biosynthetic process" evidence=IEA

GO:0008531 "riboflavin kinase activity" evidence=IEA

UNIPROTKB|Q969G6 RFK "Riboflavin kinase" [Homo sapiens (taxid:9606)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 61/109 (55%), Positives = 82/109 (75%)

Query:    22 PYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVM 81
             PYF +G +V+GFGRGSK+LGIPTAN  ++ V +LP     G+YYGW+ +  G  V+KMV+
Sbjct:     5 PYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADISTGIYYGWASVGSGD-VHKMVV 63

Query:    82 SIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
             SIGWNP+YKN KKSME HI+H F  D Y   L++ ++GY+RPE +F+SL
Sbjct:    64 SIGWNPYYKNTKKSMETHIMHTFKEDFYGEILNVAIVGYLRPEKNFDSL 112

GO:0046872 "metal ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0009398 "FMN biosynthetic process" evidence=IEA

GO:0008531 "riboflavin kinase activity" evidence=NAS;TAS

GO:0009231 "riboflavin biosynthetic process" evidence=NAS

GO:0005737 "cytoplasm" evidence=NAS

GO:0005829 "cytosol" evidence=TAS

GO:0006766 "vitamin metabolic process" evidence=TAS

GO:0006767 "water-soluble vitamin metabolic process" evidence=TAS

GO:0006771 "riboflavin metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|F1SJ99 RFK "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 61/109 (55%), Positives = 82/109 (75%)

Query:    22 PYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVM 81
             PYF +G +V+GFGRGSK+LGIPTAN  ++ V +LP     G+YYGW+ +  G  V+KMV+
Sbjct:    12 PYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADVSTGIYYGWASVGSGD-VHKMVV 70

Query:    82 SIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
             SIGWNP+YKN KKSME HI+H F  D Y   L++ ++GY+RPE +F+SL
Sbjct:    71 SIGWNPYYKNTKKSMETHIMHTFKEDFYGEILNVAIVGYLRPEKNFDSL 119

GO:0005739 "mitochondrion" evidence=IEA

GO:0009231 "riboflavin biosynthetic process" evidence=IEA

GO:0008531 "riboflavin kinase activity" evidence=IEA

MGI|MGI:1914688 Rfk "riboflavin kinase" [Mus musculus (taxid:10090)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 61/109 (55%), Positives = 82/109 (75%)

Query:    22 PYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVM 81
             P+F +G +V+GFGRGSK+LGIPTAN  ++ V +LP     G+YYGW+ +  G  V+KMV+
Sbjct:     5 PFFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADVSTGIYYGWASVGSGD-VHKMVV 63

Query:    82 SIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
             SIGWNP+YKN KKSME HIIH F  D Y   L++ ++GY+RPE +F+SL
Sbjct:    64 SIGWNPYYKNVKKSMETHIIHTFKEDFYGEILNVAIVGYLRPEKNFDSL 112

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008531 "riboflavin kinase activity" evidence=ISA

GO:0009231 "riboflavin biosynthetic process" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=ISA

GO:0016740 "transferase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1549748 Rfk "riboflavin kinase" [Rattus norvegicus (taxid:10116)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 61/109 (55%), Positives = 82/109 (75%)

Query:    22 PYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVM 81
             P+F +G +V+GFGRGSK+LGIPTAN  ++ V +LP     G+YYGW+ +  G  V+KMV+
Sbjct:     5 PFFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADVSTGIYYGWASVGSGE-VHKMVV 63

Query:    82 SIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
             SIGWNP+YKN KKSME HIIH F  D Y   L++ ++GY+RPE +F+SL
Sbjct:    64 SIGWNPYYKNVKKSMETHIIHTFKEDFYGEILNVAIVGYLRPEKNFDSL 112

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0008531 "riboflavin kinase activity" evidence=IEA

GO:0009231 "riboflavin biosynthetic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O76206	RIFK_DROME	2, ., 7, ., 1, ., 2, 6	0.6306	0.8333	0.7189	yes	N/A
O74866	RIFK_SCHPO	2, ., 7, ., 1, ., 2, 6	0.4913	0.8636	0.6993	yes	N/A
Q8CFV9	RIFK_MOUSE	2, ., 7, ., 1, ., 2, 6	0.5596	0.8181	0.6967	yes	N/A
Q6FM49	RIFK_CANGA	2, ., 7, ., 1, ., 2, 6	0.3605	0.8863	0.6190	yes	N/A
Q969G6	RIFK_HUMAN	2, ., 7, ., 1, ., 2, 6	0.5596	0.8181	0.6967	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.1	0.766
4th Layer	2.7.1.26	0.824

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	132
PLN02940	382	PLN02940, PLN02940, riboflavin kinase	7e-38
pfam01687	125	pfam01687, Flavokinase, Riboflavin kinase	8e-38
smart00904	124	smart00904, Flavokinase, Riboflavin kinase	3e-34
COG0196	304	COG0196, RibF, FAD synthase [Coenzyme metabolism]	9e-26
PRK05627	305	PRK05627, PRK05627, bifunctional riboflavin kinase	5e-23
TIGR00083	288	TIGR00083, ribF, riboflavin kinase/FMN adenylyltra	5e-13

>gnl|CDD|178528 PLN02940, PLN02940, riboflavin kinase

 Score =  131 bits (331), Expect = 7e-38
 Identities = 55/109 (50%), Positives = 74/109 (67%), Gaps = 1/109 (0%)

Query: 22  PYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVM 81
           P+   G ++KGFGRGSK LGIPTAN+  E    +      GVY+GW+ LS    VYKMVM
Sbjct: 238 PWHIGGPVIKGFGRGSKVLGIPTANLSTENYSDVLSEHPSGVYFGWAGLST-RGVYKMVM 296

Query: 82  SIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
           SIGWNP++ N +K++E  ++H+FG D Y   L + ++GYIRPE +F SL
Sbjct: 297 SIGWNPYFNNTEKTIEPWLLHDFGEDFYGEELRLVIVGYIRPEANFPSL 345

Length = 382

>gnl|CDD|190069 pfam01687, Flavokinase, Riboflavin kinase

 Score =  124 bits (313), Expect = 8e-38
 Identities = 45/110 (40%), Positives = 62/110 (56%), Gaps = 7/110 (6%)

Query: 21  YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMV 80
            PY   G +V G GRG   LG PTAN+     K LP++   GVY    K+     VY  V
Sbjct: 4   RPYSISGTVVHGKGRGRT-LGFPTANLSLPKDKLLPKN---GVYAVRVKI--DGKVYPGV 57

Query: 81  MSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
            +IG+NP +  KK ++EVHI+ +F  DLY   + +  L ++RPE  F+SL
Sbjct: 58  ANIGYNPTFGGKKPTIEVHIL-DFDGDLYGEEIRVEFLKFLRPEKKFDSL 106

This family represents the C-terminal region of the bifunctional riboflavin biosynthesis protein known as RibC in Bacillus subtilis. The RibC protein from Bacillus subtilis has both flavokinase and flavin adenine dinucleotide synthetase (FAD-synthetase) activities. RibC plays an essential role in the flavin metabolism. This domain is thought to have kinase activity. Length = 125

>gnl|CDD|214901 smart00904, Flavokinase, Riboflavin kinase

 Score =  115 bits (290), Expect = 3e-34
 Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 8/110 (7%)

Query: 21  YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMV 80
            PY   G +V G  RG   LG PTAN+  +    LP++   GVY    ++      Y  V
Sbjct: 4   RPYSISGRVVHGDKRGRT-LGFPTANLPLDDRLLLPKN---GVYAVRVRVDGKI--YPGV 57

Query: 81  MSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
            +IG  P +    +S+EVHI+   G DLY   + +  L +IR E  F+SL
Sbjct: 58  ANIGTRPTF-GGDRSVEVHILDFSG-DLYGEEIEVEFLKFIRDEQKFDSL 105

Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase, which converts it into FMN, and FAD synthetase, which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme. the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases. This entry represents riboflavin kinase, which occurs as part of a bifunctional enzyme or a stand-alone enzyme. Length = 124

>gnl|CDD|223274 COG0196, RibF, FAD synthase [Coenzyme metabolism]

 Score = 98.1 bits (245), Expect = 9e-26
 Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 8/110 (7%)

Query: 21  YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMV 80
            PY  +G +V G   G + LG PTAN+  +           GVY    KL     VY  V
Sbjct: 184 RPYSIEGKVVHGQKLG-RTLGFPTANIYLKDNVLPAF----GVYAVRVKL--DGGVYPGV 236

Query: 81  MSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
            ++G+ P     ++S+EVHI+  F  DLY   + +  L +IR E  F+SL
Sbjct: 237 ANVGYRPTVDGSERSLEVHILD-FNGDLYGERVKVRFLKFIRDEKKFDSL 285

Length = 304

>gnl|CDD|235536 PRK05627, PRK05627, bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed

 Score = 90.6 bits (226), Expect = 5e-23
 Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 12/112 (10%)

Query: 21  YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDP--GVYYGWSKLSDGPTVYK 78
            PY   G +V G   G + LG PTAN+       LP+   P  GVY    K+   P  Y 
Sbjct: 184 RPYSISGRVVHGQKLG-RTLGFPTANLP------LPDRVLPADGVYAVRVKVDGKP--YP 234

Query: 79  MVMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
            V +IG  P     ++ +EVH++ +F  DLY   +++  L  +R E  F+SL
Sbjct: 235 GVANIGTRPTVDGGRQLLEVHLL-DFNGDLYGEHITVEFLKKLRDEQKFDSL 285

Length = 305

>gnl|CDD|232818 TIGR00083, ribF, riboflavin kinase/FMN adenylyltransferase

 Score = 63.6 bits (155), Expect = 5e-13
 Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 22  PYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVM 81
           PYF  G ++ G   G   LG PTAN+  +           G YY    L +    Y  V 
Sbjct: 168 PYFICGTVIHGQKLGRT-LGFPTANIKLKNQVLPL----KGGYYVVVVLLN-GEPYPGVG 221

Query: 82  SIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
           +IG  P +  ++  +EVH++ +F  +LY   + + ++  IRPE  F+SL
Sbjct: 222 NIGNRPTFIGQQLVIEVHLL-DFSGELYGQEIKVTLVKKIRPEQKFSSL 269

multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase) [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD]. Length = 288

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	132
TIGR00083	288	ribF riboflavin kinase/FMN adenylyltransferase. mu	100.0
PF01687	125	Flavokinase: Riboflavin kinase; InterPro: IPR01586	100.0
PRK05627	305	bifunctional riboflavin kinase/FMN adenylyltransfe	100.0
COG0196	304	RibF FAD synthase [Coenzyme metabolism]	100.0
PLN02940	382	riboflavin kinase	100.0
KOG3110|consensus	153		100.0
PRK07143	279	hypothetical protein; Provisional	100.0

>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase

Probab=100.00  E-value=3.5e-46  Score=301.29  Aligned_cols=124  Identities=31%  Similarity=0.464  Sum_probs=116.7

Q ss_pred             cHHHHHHHHCCChhhhhcc--CCeEEEEEEEccCCCCccccCceeecccCCccccCCCCCCCceEEEEEEEcCCCeEEEE
Q psy7973           2 SQSANIIKQNGVCHQAKDK--YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKM   79 (132)
Q Consensus         2 s~~ir~~l~~g~i~~a~~l--~py~i~G~Vv~G~~~G~~~lGfPTANl~~~~~~~lp~~~~~GVYa~~~~~~~~~~~~~~   79 (132)
                      ||+||++|++||+++|++|  |||+++|+|+||+++|| +||||||||.+++...+|+   .|||++|+.++ +. +|+|
T Consensus       146 ST~IR~~l~~G~i~~A~~lLGr~y~i~G~Vv~G~~~Gr-~lGfPTaNl~~~~~~~~p~---~GVYa~~v~i~-~~-~y~~  219 (288)
T TIGR00083       146 SSAIRQALKNGDLELANKLLGRPYFICGTVIHGQKLGR-TLGFPTANIKLKNQVLPLK---GGYYVVVVLLN-GE-PYPG  219 (288)
T ss_pred             HHHHHHHHHcCCHHHHHHhhhhhhccceEEEecCCCcc-cccCceEEecCcccccCCC---cceEEEEEEeC-Ce-EEEE
Confidence            8999999999999999999  99999999999999996 6999999999887667787   89999999984 66 8999


Q ss_pred             EEEecCCCccCCCceEEEEEEccccCCCCCCCeEEEEEeeecCCCCCCCCCCC
Q psy7973          80 VMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSLGT  132 (132)
Q Consensus        80 v~niG~~Ptf~~~~~~iEvhil~df~~dlYg~~i~v~~~~~iR~e~kF~s~~~  132 (132)
                      |+|||+||||++.+..+|+||| ||++|+||++|+|+|++|||+|+||+|+||
T Consensus       220 v~niG~~PT~~~~~~~~E~~il-df~~dlYg~~i~v~f~~~iR~e~kF~s~~~  271 (288)
T TIGR00083       220 VGNIGNRPTFIGQQLVIEVHLL-DFSGELYGQEIKVTLVKKIRPEQKFSSLDE  271 (288)
T ss_pred             EEEeCCCCccCCCceEEEEEeC-CCCcccCCCEEEEEeHHhccCCCCcCCHHH
Confidence            9999999999876788999999 999999999999999999999999999875

multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).

>PF01687 Flavokinase: Riboflavin kinase; InterPro: IPR015865 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2

Probab=100.00  E-value=1.9e-45  Score=265.58  Aligned_cols=105  Identities=42%  Similarity=0.803  Sum_probs=92.2

Q ss_pred             CCeEEEEEEEccCCCCccccCceeecccCCccccCCCCCCCceEEEEEEEcCCCeEEEEEEEecCCCccCCCceEEEEEE
Q psy7973          21 YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVMSIGWNPFYKNKKKSMEVHI  100 (132)
Q Consensus        21 ~py~i~G~Vv~G~~~G~~~lGfPTANl~~~~~~~lp~~~~~GVYa~~~~~~~~~~~~~~v~niG~~Ptf~~~~~~iEvhi  100 (132)
                      |||+++|+|+||+++|| +||||||||.++.+..+|+   .|||++|+.++ +. +|+||+|||+||||++++.++||||
T Consensus         4 ~py~i~G~Vv~G~~~Gr-~lGfPTANl~~~~~~~~p~---~GVYa~~v~~~-~~-~~~~v~niG~~PTf~~~~~~vE~hi   77 (125)
T PF01687_consen    4 RPYSISGTVVHGFGRGR-KLGFPTANLDIPDDKLLPK---EGVYAVWVRVD-GK-WYPGVTNIGYRPTFDGKERTVEVHI   77 (125)
T ss_dssp             SSEEEEEEEEC-SSCCC-CTTS-EEEEEEHCCCTCCC---TEEEEEEEEET-SE-EEEEEEEEEEETTTSSCEEEEEEEE
T ss_pred             CCEEEEEEEEeCCcccc-ccCCccccccCCccccccc---CEEEEEEEEEC-CE-EEEeEEEecCCCccCcCceeEEEEE
Confidence            99999999999999996 6999999999966688998   89999999994 66 9999999999999998889999999


Q ss_pred             ccccCCCCCCCeEEEEEeeecCCCCCCCCCCC
Q psy7973         101 IHEFGRDLYDLTLSICVLGYIRPELDFNSLGT  132 (132)
Q Consensus       101 l~df~~dlYg~~i~v~~~~~iR~e~kF~s~~~  132 (132)
                      | ||++|+||++|+|+|++|||+|+||+|+||
T Consensus        78 l-df~~dlYg~~i~v~~~~~lR~e~kF~s~e~  108 (125)
T PF01687_consen   78 L-DFDGDLYGKKIKVEFLKFLRPEKKFDSLEE  108 (125)
T ss_dssp             T-TSSSE-TTSEEEEEEEEEEEE----SSHHH
T ss_pred             e-ccCcccCCCeEEEEEEeCccCCcccCCHHH
Confidence            9 999999999999999999999999999875

7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents the riboflavin kinase domains from bacteria and eukaryotes.; GO: 0008531 riboflavin kinase activity, 0009231 riboflavin biosynthetic process; PDB: 1Q9S_A 1NB9_A 1P4M_A 1NB0_A 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A ....

>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed

Probab=100.00  E-value=2.5e-44  Score=292.38  Aligned_cols=123  Identities=33%  Similarity=0.475  Sum_probs=115.4

Q ss_pred             cHHHHHHHHCCChhhhhcc--CCeEEEEEEEccCCCCccccCceeecccCCccccCCCCCCCceEEEEEEEcCCCeEEEE
Q psy7973           2 SQSANIIKQNGVCHQAKDK--YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKM   79 (132)
Q Consensus         2 s~~ir~~l~~g~i~~a~~l--~py~i~G~Vv~G~~~G~~~lGfPTANl~~~~~~~lp~~~~~GVYa~~~~~~~~~~~~~~   79 (132)
                      ||+||++|++|||+.|++|  |||+++|+|+||+++|| +||||||||.+++. .+|+   .|||++|+.++ +. +|+|
T Consensus       163 ST~IR~~I~~G~i~~A~~lLg~~y~~~g~V~~G~~~Gr-~lgfPTaNl~~~~~-~~p~---~GVY~~~~~i~-~~-~y~~  235 (305)
T PRK05627        163 STAIRQALAEGDLELANKLLGRPYSISGRVVHGQKLGR-TLGFPTANLPLPDR-VLPA---DGVYAVRVKVD-GK-PYPG  235 (305)
T ss_pred             hHHHHHHHHcCCHHHHHhhhcCCCceEEEEEECcccCc-cccceeEeecCccC-CCCC---ceEEEEEEEEC-CE-EEEE
Confidence            8999999999999999999  99999999999999996 69999999998764 4587   89999999995 56 8999


Q ss_pred             EEEecCCCccCCCceEEEEEEccccCCCCCCCeEEEEEeeecCCCCCCCCCCC
Q psy7973          80 VMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSLGT  132 (132)
Q Consensus        80 v~niG~~Ptf~~~~~~iEvhil~df~~dlYg~~i~v~~~~~iR~e~kF~s~~~  132 (132)
                      |+|||+||||++++.++|+||| ||++|+||++++|+|++|||+|+||+|+||
T Consensus       236 ~~~iG~~ptf~~~~~~~E~~i~-df~~d~Yg~~i~v~~~~~iR~e~kF~s~~~  287 (305)
T PRK05627        236 VANIGTRPTVDGGRQLLEVHLL-DFNGDLYGEHITVEFLKKLRDEQKFDSLDE  287 (305)
T ss_pred             EEEecCCCccCCCceEEEEEec-CCCCccCCCEEEEEEhhhcCCCCCcCCHHH
Confidence            9999999999877789999999 999999999999999999999999999875

>COG0196 RibF FAD synthase [Coenzyme metabolism]

Probab=100.00  E-value=4.9e-42  Score=278.66  Aligned_cols=123  Identities=36%  Similarity=0.572  Sum_probs=115.0

Q ss_pred             cHHHHHHHHCCChhhhhcc--CCeEEEEEEEccCCCCccccCceeecccCCccccCCCCCCCceEEEEEEEcCCCeEEEE
Q psy7973           2 SQSANIIKQNGVCHQAKDK--YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKM   79 (132)
Q Consensus         2 s~~ir~~l~~g~i~~a~~l--~py~i~G~Vv~G~~~G~~~lGfPTANl~~~~~~~lp~~~~~GVYa~~~~~~~~~~~~~~   79 (132)
                      ||+||++|++||++.|++|  |||+++|+|+||+++|| +||||||||.++. ..+|+   .|||++|+.+. ++ .|++
T Consensus       163 St~IR~~L~~gdl~~A~~lLG~py~i~G~Vv~G~~~Gr-~lGfPTaNi~~~~-~~~~~---~GVYav~v~~~-~~-~~~g  235 (304)
T COG0196         163 STAIRQALREGDLEEANKLLGRPYSIEGKVVHGQKLGR-TLGFPTANIYLKD-NVLPA---FGVYAVRVKLD-GG-VYPG  235 (304)
T ss_pred             hHHHHHHHhcCCHHHHHHhcCCCeEEEEEEEccccccc-ccCCCcccccccc-ccccC---CeeEEEEEEEC-Cc-cccc
Confidence            8999999999999999999  99999999999999995 7999999999876 55666   89999999995 44 5999


Q ss_pred             EEEecCCCccCCCceEEEEEEccccCCCCCCCeEEEEEeeecCCCCCCCCCCC
Q psy7973          80 VMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSLGT  132 (132)
Q Consensus        80 v~niG~~Ptf~~~~~~iEvhil~df~~dlYg~~i~v~~~~~iR~e~kF~s~~~  132 (132)
                      |+|||+||||++...++|+|+| ||++|+||+.++|.|++|||+|+||+|+|+
T Consensus       236 v~~vG~rpt~~~~~~~lEvhi~-Df~~dlYG~~i~v~~~~~iR~e~kF~s~d~  287 (304)
T COG0196         236 VANVGYRPTVDGSERSLEVHIL-DFNGDLYGERVKVRFLKFIRDEKKFDSLDE  287 (304)
T ss_pred             eEEecccccccCCeeEEEEEEe-cccccccCceEEEEEhhhcccccCCCCHHH
Confidence            9999999999988899999999 899999999999999999999999999875

>PLN02940 riboflavin kinase

Probab=100.00  E-value=4e-39  Score=267.89  Aligned_cols=110  Identities=52%  Similarity=1.013  Sum_probs=98.1

Q ss_pred             CCeEEEEEEEccCCCCccccCceeecccCCccc-cCCCCCCCceEEEEEEEcCCCeEEEEEEEecCCCccCCCceEEEEE
Q psy7973          21 YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVK-SLPESFDPGVYYGWSKLSDGPTVYKMVMSIGWNPFYKNKKKSMEVH   99 (132)
Q Consensus        21 ~py~i~G~Vv~G~~~G~~~lGfPTANl~~~~~~-~lp~~~~~GVYa~~~~~~~~~~~~~~v~niG~~Ptf~~~~~~iEvh   99 (132)
                      |||+++|+|+||+|+||+.||||||||.++... .+|. +..|||++|+.++++. +|+||+|||+||||++++.++|+|
T Consensus       237 ~~y~~~G~Vv~G~~~G~~~lg~PTaNl~~~~~~~~~~~-p~~GVY~~~~~~~~~~-~~~~v~niG~~Pt~~~~~~~~E~~  314 (382)
T PLN02940        237 EPWHIGGPVIKGFGRGSKVLGIPTANLSTENYSDVLSE-HPSGVYFGWAGLSTRG-VYKMVMSIGWNPYFNNTEKTIEPW  314 (382)
T ss_pred             CCEEEEEEEEeCCccCcccCCCCcccCCcchhhhhcCC-CCCEEEEEEEEECCCc-eEEEEEEecCCCccCCCccEEEEE
Confidence            999999999999999975589999999987542 5641 2289999999995445 899999999999998777899999


Q ss_pred             EccccCCCCCCCeEEEEEeeecCCCCCCCCCCC
Q psy7973         100 IIHEFGRDLYDLTLSICVLGYIRPELDFNSLGT  132 (132)
Q Consensus       100 il~df~~dlYg~~i~v~~~~~iR~e~kF~s~~~  132 (132)
                      |||||++|+||++|+|+|++|||+|+||+|+||
T Consensus       315 i~~df~~dlyg~~i~v~~~~~lR~e~kF~~~~~  347 (382)
T PLN02940        315 LLHDFGEDFYGEELRLVIVGYIRPEANFPSLES  347 (382)
T ss_pred             EeCCCCCCCCCCeEEEEEehhcCCCCCCCCHHH
Confidence            999999999999999999999999999999875

>KOG3110|consensus

Probab=100.00  E-value=1.1e-38  Score=231.21  Aligned_cols=111  Identities=60%  Similarity=1.177  Sum_probs=104.4

Q ss_pred             CCeEEEEEEEccCCCCccccCceeecccCCccccCCCCCCCceEEEEEEEcCCCeEEEEEEEecCCCccCCCceEEEEEE
Q psy7973          21 YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVMSIGWNPFYKNKKKSMEVHI  100 (132)
Q Consensus        21 ~py~i~G~Vv~G~~~G~~~lGfPTANl~~~~~~~lp~~~~~GVYa~~~~~~~~~~~~~~v~niG~~Ptf~~~~~~iEvhi  100 (132)
                      .||.+.|.||+|+|||+++||+||||++.+.-..+|.++..|||++|+.++.++ +++-|+||||||.++++.+++|+|+
T Consensus        11 ~P~~~~g~VVrGFGRGskeLGiPTAN~~~~~v~~l~~~l~~GvYfG~A~v~~~~-v~kMvmSIGwNP~Y~N~~Kt~E~hl   89 (153)
T KOG3110|consen   11 LPLFFGGEVVRGFGRGSKELGIPTANFPENVVPKLPEDLPSGVYFGWAHVDKGD-VFKMVMSIGWNPYYKNKKKTMELHL   89 (153)
T ss_pred             CCEEecCeEEEecCCCccccCCccCCCCHHHHhcccccCCCceEEEeeeecCCC-ceeEEEEcccCcccCCcccceeeee
Confidence            899999999999999999999999999876555677788899999999997677 9999999999999999999999999


Q ss_pred             ccccCCCCCCCeEEEEEeeecCCCCCCCCCCC
Q psy7973         101 IHEFGRDLYDLTLSICVLGYIRPELDFNSLGT  132 (132)
Q Consensus       101 l~df~~dlYg~~i~v~~~~~iR~e~kF~s~~~  132 (132)
                      +|||..|+||+++++.+++|||||+.|+|+|+
T Consensus        90 ih~f~~DFYge~l~~~IvGyiRpe~nf~sles  121 (153)
T KOG3110|consen   90 IHDFGEDFYGETLKVIIVGYIRPELNFDSLES  121 (153)
T ss_pred             ehhcccchhhheeeEEEEEeeccccCcchHHH
Confidence            99999999999999999999999999999874

>PRK07143 hypothetical protein; Provisional

Probab=100.00  E-value=6e-35  Score=235.05  Aligned_cols=102  Identities=15%  Similarity=0.169  Sum_probs=96.6

Q ss_pred             cHHHHHHHHCCChhhhhcc--CCeEEEEEEEccCCCCccccCceeecccCCccccCCCCCCCceEEEEEEEcCCCeEEEE
Q psy7973           2 SQSANIIKQNGVCHQAKDK--YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKM   79 (132)
Q Consensus         2 s~~ir~~l~~g~i~~a~~l--~py~i~G~Vv~G~~~G~~~lGfPTANl~~~~~~~lp~~~~~GVYa~~~~~~~~~~~~~~   79 (132)
                      ||+||++|++||+++|++|  |||+++|+|+||            |||.++++.++|+   .|||++++.++ +. +|+|
T Consensus       152 ST~IR~~l~~G~i~~A~~lLGr~y~i~G~V~~G------------aNl~~~~~~~~P~---~GVYa~~v~~~-~~-~y~~  214 (279)
T PRK07143        152 TSLLKEFIEFGDIELLNSLLLYNYSISITINKN------------FEFTYPQNIIKLH---AGIYLAYVVIN-NF-KYHG  214 (279)
T ss_pred             HHHHHHHHHcCCHHHHHHHcCCCcEEEEEEECC------------eEeCCCcCcCCCC---CcEEEEEEEEC-CE-EEEE
Confidence            8999999999999999999  999999999998            9999876677888   89999999984 66 8999


Q ss_pred             EEEecCCCccCCCceEEEEEEccccCC--CCCCCeEEEEEeeecCCCCCCCC
Q psy7973          80 VMSIGWNPFYKNKKKSMEVHIIHEFGR--DLYDLTLSICVLGYIRPELDFNS  129 (132)
Q Consensus        80 v~niG~~Ptf~~~~~~iEvhil~df~~--dlYg~~i~v~~~~~iR~e~kF~s  129 (132)
                      |+|||.|||       +|+||| ||++  |+|| +|+|+|++|||+|+||+|
T Consensus       215 v~niG~~PT-------iE~hil-df~~~~dlYg-~i~v~f~~~iR~e~kF~s  257 (279)
T PRK07143        215 ILKINFNNK-------NKIKFF-DFDLIINKYQ-EIFIEIVKEIRIISSNED  257 (279)
T ss_pred             EEEecCCce-------EEEEEe-cCCCCcCCCC-EEEEEEhhccCCCcCCCc
Confidence            999999999       999999 9999  8999 999999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	132
1nb0_A	147	Crystal Structure Of Human Riboflavin Kinase Length		6e-34
1q9s_A	149	Crystal Structure Of Riboflavin Kinase With Ternary		6e-34
1n05_A	163	Crystal Structure Of Schizosaccharomyces Pombe Ribo		4e-29
3bnw_A	181	Crystal Structure Of Riboflavin Kinase From Trypano		3e-14
2x0k_A	338	Crystal Structure Of Modular Fad Synthetase From Co		8e-10
3zug_A	338	E268d Mutant Of Fad Synthetase From Corynebacterium		2e-09
1mrz_A	293	Crystal Structure Of A Flavin Binding Protein From		2e-04
3op1_A	308	Crystal Structure Of Macrolide-Efflux Protein Sp_11		3e-04

>pdb|1NB0|A Chain A, Crystal Structure Of Human Riboflavin Kinase Length = 147

Iteration: 1
 Score =  139 bits (349), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 61/109 (55%), Positives = 82/109 (75%), Gaps = 1/109 (0%)
Query: 22  PYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVM 81
           PYF +G +V+GFGRGSK+LGIPTAN  ++ V +LP     G+YYGW+ +  G  V+KMV+
Sbjct: 4   PYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADISTGIYYGWASVGSG-DVHKMVV 62
Query: 82  SIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
           SIGWNP+YKN KKSME HI+H F  D Y   L++ ++GY+RPE +F+SL
Sbjct: 63  SIGWNPYYKNTKKSMETHIMHTFKEDFYGEILNVAIVGYLRPEKNFDSL 111

>pdb|1Q9S|A Chain A, Crystal Structure Of Riboflavin Kinase With Ternary Product Complex Length = 149

Iteration: 1
 Score =  139 bits (349), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 61/109 (55%), Positives = 82/109 (75%), Gaps = 1/109 (0%)
Query: 22  PYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVM 81
           PYF +G +V+GFGRGSK+LGIPTAN  ++ V +LP     G+YYGW+ +  G  V+KMV+
Sbjct: 6   PYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADISTGIYYGWASVGSG-DVHKMVV 64
Query: 82  SIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
           SIGWNP+YKN KKSME HI+H F  D Y   L++ ++GY+RPE +F+SL
Sbjct: 65  SIGWNPYYKNTKKSMETHIMHTFKEDFYGEILNVAIVGYLRPEKNFDSL 113

>pdb|1N05|A Chain A, Crystal Structure Of Schizosaccharomyces Pombe Riboflavin Kinase Reveals A Novel Atp And Riboflavin Binding Fold Length = 163

Iteration: 1
 Score =  123 bits (308), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 57/116 (49%), Positives = 80/116 (68%), Gaps = 2/116 (1%)
Query: 15  HQAKDKYPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGP 74
            + +  YP   +G +V GFGRGSKELGIPTAN+ ++A++ L    D GVY+G++ +    
Sbjct: 16  EKVQSPYPIRFEGKVVHGFGRGSKELGIPTANISEDAIQELLRYRDSGVYFGYAMVQK-- 73
Query: 75  TVYKMVMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
            V+ MVMS+GWNP+YKNK +S EVH+I   G D Y+  + + VLGYIRPEL++  L
Sbjct: 74  RVFPMVMSVGWNPYYKNKLRSAEVHLIERQGEDFYEEIMRVIVLGYIRPELNYAGL 129

>pdb|3BNW|A Chain A, Crystal Structure Of Riboflavin Kinase From Trypanosoma Brucei Length = 181

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 61/117 (52%), Gaps = 8/117 (6%)
Query: 22  PYFTKGIIVKGFGRGSKELGIPTANM-CDEAVKSLPESFDPGVYYGWSKLSDGPT----- 75
           P+F +G +V G GRG  +LG PTAN+  D+ V    + +   V YGW  +S  P      
Sbjct: 17  PFFLRGKVVHGKGRGGSQLGFPTANIGLDKDVMECLQPYKNLVVYGWGTVSQVPGKERES 76
Query: 76  --VYKMVMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
              Y    SIG+N  +  K  ++E + +HEFG D Y   + I VLG IR    F+SL
Sbjct: 77  FGPYPFAASIGFNMQFDEKTLTVEPYFLHEFGWDFYGAVVKIIVLGEIRSMGSFHSL 133

>pdb|2X0K|A Chain A, Crystal Structure Of Modular Fad Synthetase From Corynebacterium Ammoniagenes Length = 338

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 14/118 (11%)
Query: 23  YFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKL--SDGP------ 74
           ++  G +V+G GRG KELG PTAN       +LP     GVY GW  +  ++ P      
Sbjct: 187 FYVTGPVVRGAGRGGKELGFPTANQYFHDTVALPAD---GVYAGWLTILPTEAPVSGNME 243
Query: 75  --TVYKMVMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
               Y   +S+G NP + ++++S+E  ++ +   DLY   + +  + ++R    F+S+
Sbjct: 244 PEVAYAAAISVGTNPTFGDEQRSVESFVL-DRDADLYGHDVKVEFVDHVRAMEKFDSV 300

>pdb|3ZUG|A Chain A, E268d Mutant Of Fad Synthetase From Corynebacterium Ammoniagenes Length = 338

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 14/118 (11%)
Query: 23  YFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKL--SDGP------ 74
           ++  G +V+G GRG KELG PTAN       +LP     GVY GW  +  ++ P      
Sbjct: 187 FYVTGPVVRGAGRGGKELGFPTANQYFHDTVALPAD---GVYAGWLTILPTEAPVSGNME 243
Query: 75  --TVYKMVMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
               Y   +S+G NP + ++++S++  ++ +   DLY   + +  + ++R    F+S+
Sbjct: 244 PEVAYAAAISVGTNPTFGDEQRSVDSFVL-DRDADLYGHDVKVEFVDHVRAMEKFDSV 300

>pdb|1MRZ|A Chain A, Crystal Structure Of A Flavin Binding Protein From Thermotoga Maritima, Tm379 Length = 293

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 8/101 (7%)
Query: 31  KGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVMSIGWNPFYK 90
           + FGR   +LG PTAN+ D   + L +    GVY     L DG   +  VM++G+ P   
Sbjct: 170 REFGR---KLGFPTANI-DRGNEKLVD-LKRGVYLVRVHLPDGKKKFG-VMNVGFRPTVG 223
Query: 91  NKKK-SMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
           + +    EV+I+ +F  DLY   L + VL ++R E  F+S+
Sbjct: 224 DARNVKYEVYIL-DFEGDLYGQRLKLEVLKFMRDEKKFDSI 263

>pdb|3OP1|A Chain A, Crystal Structure Of Macrolide-Efflux Protein Sp_1110 From Streptococcus Pneumoniae Length = 308

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 11/111 (9%)
Query: 22  PYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDP--GVYYGWSKLSDGPTVYKM 79
           P  ++G +V G  RG + +G PTAN+       L  ++ P  GVY    ++      Y+ 
Sbjct: 189 PLPSRGXVVHGNARG-RTIGYPTANLV-----LLDRTYXPADGVYVVDVEIQRQK--YRA 240
Query: 80  VMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
             S+G N  +  ++   EV+I  +F +D+Y  T+ +  L  IR    F+S+
Sbjct: 241 XASVGKNVTFDGEEARFEVNIF-DFNQDIYGETVXVYWLDRIRDXTKFDSV 290

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	132
1n08_A	163	Putative riboflavin kinase; phophoryl transferases	3e-54
1nb0_A	147	Hypothetical protein FLJ11149; beta barrel, transf	1e-53
3bnw_A	181	Riboflavin kinase, putative; APO structure, struct	1e-49
3op1_A	308	Macrolide-efflux protein; structural genomics, PSI	1e-26
2x0k_A	338	Riboflavin biosynthesis protein RIBF; riboflavin k	2e-25
1mrz_A	293	Riboflavin kinase/FMN adenylyltransferase; rossman	3e-25

>1n08_A Putative riboflavin kinase; phophoryl transferases, flavin cofactors, metal binding; HET: ADP; 1.60A {Schizosaccharomyces pombe} SCOP: b.43.5.1 PDB: 1n05_A* 1n07_A* 1n06_A* Length = 163

 Score =  166 bits (423), Expect = 3e-54
 Identities = 57/110 (51%), Positives = 78/110 (70%), Gaps = 2/110 (1%)

Query: 21  YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMV 80
           YP   +G +V GFGRGSKELGIPTAN+ ++A++ L    D GVY+G++ +     V+ MV
Sbjct: 22  YPIRFEGKVVHGFGRGSKELGIPTANISEDAIQELLRYRDSGVYFGYAMVQKR--VFPMV 79

Query: 81  MSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
           MS+GWNP+YKNK +S EVH+I   G D Y+  + + VLGYIRPEL++  L
Sbjct: 80  MSVGWNPYYKNKLRSAEVHLIERQGEDFYEEIMRVIVLGYIRPELNYAGL 129

>1nb0_A Hypothetical protein FLJ11149; beta barrel, transferase; HET: ADP; 1.70A {Homo sapiens} SCOP: b.43.5.1 PDB: 1nb9_A* 1p4m_A* 1q9s_A* Length = 147

 Score =  164 bits (418), Expect = 1e-53
 Identities = 61/110 (55%), Positives = 82/110 (74%), Gaps = 1/110 (0%)

Query: 21  YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMV 80
            PYF +G +V+GFGRGSK+LGIPTAN  ++ V +LP     G+YYGW+ +  G  V+KMV
Sbjct: 3   LPYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADISTGIYYGWASVGSGD-VHKMV 61

Query: 81  MSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
           +SIGWNP+YKN KKSME HI+H F  D Y   L++ ++GY+RPE +F+SL
Sbjct: 62  VSIGWNPYYKNTKKSMETHIMHTFKEDFYGEILNVAIVGYLRPEKNFDSL 111

>3bnw_A Riboflavin kinase, putative; APO structure, structural genomics, structural genomics of P protozoa consortium, SGPP, transferase; 2.40A {Trypanosoma brucei} Length = 181

 Score =  155 bits (394), Expect = 1e-49
 Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 8/123 (6%)

Query: 16  QAKDKYPYFTKGIIVKGFGRGSKELGIPTANM-CDEAVKSLPESFDPGVYYGWSKLSDGP 74
           Q     P+F +G +V G GRG  +LG PTAN+  D+ V    + +   V YGW  +S  P
Sbjct: 11  QTGSFQPFFLRGKVVHGKGRGGSQLGFPTANIGLDKDVMECLQPYKNLVVYGWGTVSQVP 70

Query: 75  -------TVYKMVMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDF 127
                    Y    SIG+N  +  K  ++E + +HEFG D Y   + I VLG IR    F
Sbjct: 71  GKERESFGPYPFAASIGFNMQFDEKTLTVEPYFLHEFGWDFYGAVVKIIVLGEIRSMGSF 130

Query: 128 NSL 130
           +SL
Sbjct: 131 HSL 133

>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae} Length = 308

 Score = 99.9 bits (250), Expect = 1e-26
 Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 7/110 (6%)

Query: 21  YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMV 80
            P  ++G++V G  RG + +G PTAN+       +P     GVY    ++      Y+ +
Sbjct: 188 APLPSRGMVVHGNARG-RTIGYPTANLVLLDRTYMPAD---GVYVVDVEIQRQK--YRAM 241

Query: 81  MSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
            S+G N  +  ++   EV+I  +F +D+Y  T+ +  L  IR    F+S+
Sbjct: 242 ASVGKNVTFDGEEARFEVNIF-DFNQDIYGETVMVYWLDRIRDMTKFDSV 290

>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes} Length = 338

 Score = 97.2 bits (243), Expect = 2e-25
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 14/120 (11%)

Query: 21  YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPT----- 75
             ++  G +V+G GRG KELG PTAN       +LP     GVY GW  +          
Sbjct: 185 RHFYVTGPVVRGAGRGGKELGFPTANQYFHDTVALPAD---GVYAGWLTILPTEAPVSGN 241

Query: 76  -----VYKMVMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
                 Y   +S+G NP + ++++S+E  ++ +   DLY   + +  + ++R    F+S+
Sbjct: 242 MEPEVAYAAAISVGTNPTFGDEQRSVESFVL-DRDADLYGHDVKVEFVDHVRAMEKFDSV 300

>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A Length = 293

 Score = 95.6 bits (239), Expect = 3e-25
 Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 8/112 (7%)

Query: 21  YPYFTKGIIVKGFGRGSKELGIPTANM-CDEAVKSLPESFDPGVYYGWSKLSDGPTVYKM 79
             +  +GI+ K    G ++LG PTAN+          +    GVY     L DG      
Sbjct: 158 RYFEIEGIVHKDREFG-RKLGFPTANIDRGNEKLVDLKR---GVYLVRVHLPDG-KKKFG 212

Query: 80  VMSIGWNP-FYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
           VM++G+ P     +    EV+I+ +F  DLY   L + VL ++R E  F+S+
Sbjct: 213 VMNVGFRPTVGDARNVKYEVYIL-DFEGDLYGQRLKLEVLKFMRDEKKFDSI 263

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	132
3op1_A	308	Macrolide-efflux protein; structural genomics, PSI	100.0
2x0k_A	338	Riboflavin biosynthesis protein RIBF; riboflavin k	100.0
1nb0_A	147	Hypothetical protein FLJ11149; beta barrel, transf	100.0
1mrz_A	293	Riboflavin kinase/FMN adenylyltransferase; rossman	100.0
1n08_A	163	Putative riboflavin kinase; phophoryl transferases	100.0
3bnw_A	181	Riboflavin kinase, putative; APO structure, struct	100.0

>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}

Probab=100.00  E-value=1.7e-48  Score=316.01  Aligned_cols=124  Identities=27%  Similarity=0.445  Sum_probs=110.4

Q ss_pred             cHHHHHHHHCCChhhhhcc--CCeEEEEEEEccCCCCccccCceeecccCCccccCCCCCCCceEEEEEEEcCCCeEEEE
Q psy7973           2 SQSANIIKQNGVCHQAKDK--YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKM   79 (132)
Q Consensus         2 s~~ir~~l~~g~i~~a~~l--~py~i~G~Vv~G~~~G~~~lGfPTANl~~~~~~~lp~~~~~GVYa~~~~~~~~~~~~~~   79 (132)
                      ||+||++|++||+++|++|  |||+++|+|+||+++|| +||||||||.+++...+|+   .|||++|+.++ +. +|+|
T Consensus       167 ST~IR~~L~~G~v~~A~~lLGrpy~i~G~Vv~G~~~Gr-~lGfPTANl~~~~~~~~P~---~GVYa~~v~~~-~~-~~~g  240 (308)
T 3op1_A          167 STRIRQAILDGNVKEAGKLLGAPLPSRGMVVHGNARGR-TIGYPTANLVLLDRTYMPA---DGVYVVDVEIQ-RQ-KYRA  240 (308)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHSSCCEEEEEEEBCC-------CCCCEEEEECSSBCCCC---SEEEEEEEEET-TE-EEEE
T ss_pred             HHHHHHHHHcCCHHHHHhhcCcceeEEEEEEECCccCc-ccCCCcEeecCcccccCCC---CceEEEEEEEC-CE-EEEE
Confidence            8999999999999999999  99999999999999996 6999999999876678898   89999999994 66 9999


Q ss_pred             EEEecCCCccCCCceEEEEEEccccCCCCCCCeEEEEEeeecCCCCCCCCCCC
Q psy7973          80 VMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSLGT  132 (132)
Q Consensus        80 v~niG~~Ptf~~~~~~iEvhil~df~~dlYg~~i~v~~~~~iR~e~kF~s~~~  132 (132)
                      |+|||+||||++.+.++||||| ||++|+||++|+|+|++|||+|+||+|+||
T Consensus       241 v~niG~~PT~~~~~~~vE~hil-df~~dlYG~~i~v~f~~~lR~e~kF~s~e~  292 (308)
T 3op1_A          241 MASVGKNVTFDGEEARFEVNIF-DFNQDIYGETVMVYWLDRIRDMTKFDSVDQ  292 (308)
T ss_dssp             EEEECBTTTBC--CCEEEEEET-TCCCCCTTCEEEEEEEEEEECCCCCSSHHH
T ss_pred             EEEeccCCccCCCceEEEEEEe-cCCCccCCCEEEEEEHHhcCCCCCCCCHHH
Confidence            9999999999877789999999 999999999999999999999999999874

>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}

Probab=100.00  E-value=3.5e-47  Score=311.41  Aligned_cols=126  Identities=29%  Similarity=0.530  Sum_probs=116.7

Q ss_pred             cHHHHHHHHCCChhhhhcc--CCeEEEEEEEccCCCCccccCceeecccCCccccCCCCCCCceEEEEEEEcC-------
Q psy7973           2 SQSANIIKQNGVCHQAKDK--YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSD-------   72 (132)
Q Consensus         2 s~~ir~~l~~g~i~~a~~l--~py~i~G~Vv~G~~~G~~~lGfPTANl~~~~~~~lp~~~~~GVYa~~~~~~~-------   72 (132)
                      ||+||++|++||+++|++|  |||+++|+|+||++||+|+||||||||.++....+|+   .|||++|+.++.       
T Consensus       164 ST~IR~~L~~G~i~~a~~lLGrpy~i~G~Vv~G~~~Gsr~lGfPTANl~~~~~~~~P~---~GVYa~~v~~~~~~~~~~~  240 (338)
T 2x0k_A          164 STTVREFLSEGDVARANWALGRHFYVTGPVVRGAGRGGKELGFPTANQYFHDTVALPA---DGVYAGWLTILPTEAPVSG  240 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTSCCEEEEECBCCSSCSSSCTTSCSEEEEECTTBCCCC---SEEEEEEEEECSCCSCCEE
T ss_pred             cchHHHHHhcCcHHHHHHhcceeeEEEEEEecCcccccceecccccccCCcccccCCC---CeEEEEEEEECcccccccc
Confidence            8999999999999999999  9999999999999999447999999998766677898   899999999841       


Q ss_pred             ----CCeEEEEEEEecCCCccCCCceEEEEEEccccCCCCCCCeEEEEEeeecCCCCCCCCCCC
Q psy7973          73 ----GPTVYKMVMSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSLGT  132 (132)
Q Consensus        73 ----~~~~~~~v~niG~~Ptf~~~~~~iEvhil~df~~dlYg~~i~v~~~~~iR~e~kF~s~~~  132 (132)
                          +. +|+||+|||+||||++...++||||| ||++|+||++|+|+|++|||+|+||+|+||
T Consensus       241 ~~~~~~-~~~gv~niG~~PT~~~~~~~vE~hil-df~~dlYg~~i~v~f~~~lR~e~kF~s~e~  302 (338)
T 2x0k_A          241 NMEPEV-AYAAAISVGTNPTFGDEQRSVESFVL-DRDADLYGHDVKVEFVDHVRAMEKFDSVEQ  302 (338)
T ss_dssp             SCCTTC-EEEEEEEEEEETTTCTTEEEEEEEET-TCCEECTTCEEEEEEEEEEECCCCCSSHHH
T ss_pred             ccCCCC-EEEEEEEEcCCCccCCCcceEEEEee-cCCcccCCCEEEEEEehhhCCccCCCCHHH
Confidence                56 89999999999999877788999999 899999999999999999999999999874

>1nb0_A Hypothetical protein FLJ11149; beta barrel, transferase; HET: ADP; 1.70A {Homo sapiens} SCOP: b.43.5.1 PDB: 1nb9_A* 1p4m_A* 1q9s_A*

Probab=100.00  E-value=9.4e-47  Score=277.94  Aligned_cols=111  Identities=55%  Similarity=1.118  Sum_probs=100.4

Q ss_pred             CCeEEEEEEEccCCCCccccCceeecccCCccccCCCCCCCceEEEEEEEcCCCeEEEEEEEecCCCccCCCceEEEEEE
Q psy7973          21 YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVMSIGWNPFYKNKKKSMEVHI  100 (132)
Q Consensus        21 ~py~i~G~Vv~G~~~G~~~lGfPTANl~~~~~~~lp~~~~~GVYa~~~~~~~~~~~~~~v~niG~~Ptf~~~~~~iEvhi  100 (132)
                      |||+++|+|+||++|||++||||||||.++....+|+++..|||++|+.+.++. +|+||+|||+||||++...+|||||
T Consensus         3 ~py~i~G~Vv~G~~rGrr~LGfPTANl~~~~~~~~P~~~~~GVYa~~v~~~~~~-~~~gv~nIG~~PT~~~~~~~vEvhi   81 (147)
T 1nb0_A            3 LPYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADISTGIYYGWASVGSGD-VHKMVVSIGWNPYYKNTKKSMETHI   81 (147)
T ss_dssp             CSEEEEEECBCCSSSCGGGGTCCCEECCHHHHHTSCTTCCSEEEEEEEEETTCC-CEEEEEEEEECSSSSSSCEEEEEEE
T ss_pred             ccEEEEEEEEeCCccCccccCCccEEEEccccccCCCCCCCEEEEEEEEECCCC-EEEEEEEecCCCeECCCceEEEEEE
Confidence            899999999999999977899999999775446788444489999999995556 8999999999999987778999999


Q ss_pred             ccccCCCCCCCeEEEEEeeecCCCCCCCCCCC
Q psy7973         101 IHEFGRDLYDLTLSICVLGYIRPELDFNSLGT  132 (132)
Q Consensus       101 l~df~~dlYg~~i~v~~~~~iR~e~kF~s~~~  132 (132)
                      ||||++||||++|+|+|++|||+|+||+|+||
T Consensus        82 l~df~~dlYG~~i~v~f~~~lR~E~kF~sle~  113 (147)
T 1nb0_A           82 MHTFKEDFYGEILNVAIVGYLRPEKNFDSLES  113 (147)
T ss_dssp             SSCCSSCCTTSEEEEEEEEEEECCCCCSSHHH
T ss_pred             ecCCCCccCCCEEEEEEehhccCCcCCCCHHH
Confidence            99999999999999999999999999999874

>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A

Probab=100.00  E-value=1.7e-46  Score=302.40  Aligned_cols=125  Identities=30%  Similarity=0.393  Sum_probs=96.6

Q ss_pred             cHHHHHHHHCCChhhhhcc--CCeEEEEEEEccCCCCccccCceeecccCC-ccccCCCCCCCceEEEEEEEcCCCeEEE
Q psy7973           2 SQSANIIKQNGVCHQAKDK--YPYFTKGIIVKGFGRGSKELGIPTANMCDE-AVKSLPESFDPGVYYGWSKLSDGPTVYK   78 (132)
Q Consensus         2 s~~ir~~l~~g~i~~a~~l--~py~i~G~Vv~G~~~G~~~lGfPTANl~~~-~~~~lp~~~~~GVYa~~~~~~~~~~~~~   78 (132)
                      ||+||++|++||+++|++|  |||+++|+|+||+++|| +||||||||..+ ....+|+   .|||++|+.+.++. +|+
T Consensus       137 ST~IR~~L~~G~i~~a~~lLGr~y~i~G~Vv~G~~~Gr-~lGfPTaNl~~~~~~~~~P~---~GVYa~~v~~~~~~-~~~  211 (293)
T 1mrz_A          137 SSLIRNLVQEGRVEEIPAYLGRYFEIEGIVHKDREFGR-KLGFPTANIDRGNEKLVDLK---RGVYLVRVHLPDGK-KKF  211 (293)
T ss_dssp             HHHHHHHHHTTCTTTTHHHHSSCCEEEEEC------------CCCEECBCCSSCBCCCC---SEEEEEEEECGGGC-EEE
T ss_pred             HhHHHHHHhcCcHHHHhhhcCCCeEEEEEEccCccccc-eecccceEeccCccCcCCCC---CeEEEEEEEEecCc-EEE
Confidence            8999999999999999999  99999999999999996 699999999876 5578898   89999999972256 899


Q ss_pred             EEEEecCCCccCCC-ceEEEEEEccccCCCCCCCeEEEEEeeecCCCCCCCCCCC
Q psy7973          79 MVMSIGWNPFYKNK-KKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSLGT  132 (132)
Q Consensus        79 ~v~niG~~Ptf~~~-~~~iEvhil~df~~dlYg~~i~v~~~~~iR~e~kF~s~~~  132 (132)
                      ||+|||+||||++. ..++||||| ||++|+||++|+|+|++|||+|+||+|+||
T Consensus       212 gv~niG~~PT~~~~~~~~iE~hil-df~~dlYg~~i~v~f~~~lR~e~kF~s~~~  265 (293)
T 1mrz_A          212 GVMNVGFRPTVGDARNVKYEVYIL-DFEGDLYGQRLKLEVLKFMRDEKKFDSIEE  265 (293)
T ss_dssp             EEEEEEEC------CCEEEEEEET-TCCSCCTTCEEEEEEEEEEECCCC----CC
T ss_pred             EEEEeccCcccCCCccceEEEEec-cCCcccCCCEEEEEEHHhcCCCCCCCCHHH
Confidence            99999999999875 488999999 899999999999999999999999999986

>1n08_A Putative riboflavin kinase; phophoryl transferases, flavin cofactors, metal binding; HET: ADP; 1.60A {Schizosaccharomyces pombe} SCOP: b.43.5.1 PDB: 1n05_A* 1n07_A* 1n06_A*

Probab=100.00  E-value=9.6e-45  Score=271.16  Aligned_cols=107  Identities=51%  Similarity=0.991  Sum_probs=97.4

Q ss_pred             CCeEEEEEEEccCCCCccccCceeecccCCc--cc-cCCCCCCCceEEEEEEEcCCCeEEEEEEEecCCCccCCCceEEE
Q psy7973          21 YPYFTKGIIVKGFGRGSKELGIPTANMCDEA--VK-SLPESFDPGVYYGWSKLSDGPTVYKMVMSIGWNPFYKNKKKSME   97 (132)
Q Consensus        21 ~py~i~G~Vv~G~~~G~~~lGfPTANl~~~~--~~-~lp~~~~~GVYa~~~~~~~~~~~~~~v~niG~~Ptf~~~~~~iE   97 (132)
                      |||+++|+|+||++|||++||||||||.++.  .. .+|+   .|||++|+.++ +. +|+||+|||+||||+++..+||
T Consensus        22 rpy~i~G~Vv~G~~rGrr~LGfPTANl~~~~~~~~~~~p~---~GVYa~~v~~~-~~-~~~gv~nIG~~PTf~~~~~~vE   96 (163)
T 1n08_A           22 YPIRFEGKVVHGFGRGSKELGIPTANISEDAIQELLRYRD---SGVYFGYAMVQ-KR-VFPMVMSVGWNPYYKNKLRSAE   96 (163)
T ss_dssp             CCEEEEEEEECCSSSCGGGGTCCCEEECGGGTTTTTTTSC---SEEEEEEEEET-TE-EEEEEEEEEECTTCSSCCEEEE
T ss_pred             CCEEEEEEEEeCCccCCCccCcCCCcccCcccccccCCCC---CEEEEEEEEEC-CE-EEEEEEEeCCCCeECCCceEEE
Confidence            9999999999999999878999999997741  23 4566   89999999995 55 8999999999999987778999


Q ss_pred             EEEccccCCCCCCCeEEEEEeeecCCCCCCCCCCC
Q psy7973          98 VHIIHEFGRDLYDLTLSICVLGYIRPELDFNSLGT  132 (132)
Q Consensus        98 vhil~df~~dlYg~~i~v~~~~~iR~e~kF~s~~~  132 (132)
                      |||||||++||||++|+|+|++|||+|+||+|+||
T Consensus        97 vhil~df~~dlYG~~i~V~f~~~lR~E~kF~sle~  131 (163)
T 1n08_A           97 VHLIERQGEDFYEEIMRVIVLGYIRPELNYAGLDK  131 (163)
T ss_dssp             EEETTCCSCCCTTCEEEEEEEEEEECCCCCCCHHH
T ss_pred             EEEecCCCCccCCCEEEEEEHHhccCCCCCCCHHH
Confidence            99999999999999999999999999999999874

>3bnw_A Riboflavin kinase, putative; APO structure, structural genomics, structural genomics of P protozoa consortium, SGPP, transferase; 2.40A {Trypanosoma brucei}

Probab=100.00  E-value=1.2e-44  Score=274.45  Aligned_cols=108  Identities=38%  Similarity=0.629  Sum_probs=85.5

Q ss_pred             CCeEEEEEEEccCCCCccccCceeecccCC----ccccCCCCCCCceEEEEEEEcC--------CCeEEEEEEEecCCCc
Q psy7973          21 YPYFTKGIIVKGFGRGSKELGIPTANMCDE----AVKSLPESFDPGVYYGWSKLSD--------GPTVYKMVMSIGWNPF   88 (132)
Q Consensus        21 ~py~i~G~Vv~G~~~G~~~lGfPTANl~~~----~~~~lp~~~~~GVYa~~~~~~~--------~~~~~~~v~niG~~Pt   88 (132)
                      |||+++|+|+||++|||++||||||||.++    ....+|+   .|||++|+.+++        +. +|+||+|||+|||
T Consensus        16 rpy~i~G~Vv~G~~rGrr~LGfPTANl~l~~~~~~~~~~p~---~GVYa~~v~~~~~~~~~~~~~~-~~~gv~nIG~nPT   91 (181)
T 3bnw_A           16 QPFFLRGKVVHGKGRGGSQLGFPTANIGLDKDVMECLQPYK---NLVVYGWGTVSQVPGKERESFG-PYPFAASIGFNMQ   91 (181)
T ss_dssp             CCEEEEEEEEC------CCSCCCCCEECCCHHHHHHHGGGT---TEEEEEEEEEEEETTEEEEEEE-EEEEEEEEECC--
T ss_pred             CCeEEEEEEEeCCccCccccCCccccccccccccccccCCC---CEEEEEEEEECCcccccccCCc-eeEEEEEecCCCe
Confidence            999999999999999977899999999742    2223477   899999999843        15 8999999999999


Q ss_pred             cCCCceEEEEEEccccCCCCCCCeEEEEEeeecCCCCCCCCCCC
Q psy7973          89 YKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSLGT  132 (132)
Q Consensus        89 f~~~~~~iEvhil~df~~dlYg~~i~v~~~~~iR~e~kF~s~~~  132 (132)
                      |+++..+|||||||||++||||++|+|+|++|||+|+||+|+||
T Consensus        92 f~~~~~~vEvhilhDF~~DlYG~~i~V~fl~~LR~E~kF~sle~  135 (181)
T 3bnw_A           92 FDEKTLTVEPYFLHEFGWDFYGAVVKIIVLGEIRSMGSFHSLQA  135 (181)
T ss_dssp             ----CCEEEEEESSCCSSCCTTCEEEEEEEEEEEECCCCSSHHH
T ss_pred             ECCCeeEEEEEEcCCCCCccCCCEEEEEEehhhcCCCCCCCHHH
Confidence            98777899999999999999999999999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	132
d1n08a_	154	b.43.5.1 (A:) Riboflavin kinase {Fission yeast (Sc	3e-33
d1nb9a_	147	b.43.5.1 (A:) Riboflavin kinase {Human (Homo sapie	1e-30
d1mrza1	130	b.43.5.1 (A:159-288) Riboflavin kinase domain of b	4e-19

>d1n08a_ b.43.5.1 (A:) Riboflavin kinase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 154

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin kinase-like
family: ATP-dependent riboflavin kinase-like
domain: Riboflavin kinase
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score =  112 bits (280), Expect = 3e-33
 Identities = 57/110 (51%), Positives = 77/110 (70%), Gaps = 2/110 (1%)

Query: 21  YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMV 80
           YP   +G +V GFGRGSKELGIPTAN+ ++A++ L    D GVY+G++       V+ MV
Sbjct: 14  YPIRFEGKVVHGFGRGSKELGIPTANISEDAIQELLRYRDSGVYFGYAM--VQKRVFPMV 71

Query: 81  MSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
           MS+GWNP+YKNK +S EVH+I   G D Y+  + + VLGYIRPEL++  L
Sbjct: 72  MSVGWNPYYKNKLRSAEVHLIERQGEDFYEEIMRVIVLGYIRPELNYAGL 121

>d1nb9a_ b.43.5.1 (A:) Riboflavin kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 147

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin kinase-like
family: ATP-dependent riboflavin kinase-like
domain: Riboflavin kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 1e-30
 Identities = 60/110 (54%), Positives = 81/110 (73%), Gaps = 1/110 (0%)

Query: 21  YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMV 80
            PYF +G +V+GFGRGSK+LGIPTAN  ++ V +LP     G+YYGW+ +  G   +KMV
Sbjct: 3   LPYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADISTGIYYGWASVGSGDV-HKMV 61

Query: 81  MSIGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
           +SIGWNP+YKN KKSME HI+H F  D Y   L++ ++GY+RPE +F+SL
Sbjct: 62  VSIGWNPYYKNTKKSMETHIMHTFKEDFYGEILNVAIVGYLRPEKNFDSL 111

>d1mrza1 b.43.5.1 (A:159-288) Riboflavin kinase domain of bifunctional FAD synthetase {Thermotoga maritima [TaxId: 2336]} Length = 130

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin kinase-like
family: ATP-dependent riboflavin kinase-like
domain: Riboflavin kinase domain of bifunctional FAD synthetase
species: Thermotoga maritima [TaxId: 2336]

 Score = 75.1 bits (184), Expect = 4e-19
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 4/108 (3%)

Query: 23  YFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVMS 82
           +  +GI+ K    G ++LG PTAN+     K +      GVY     L D       VM+
Sbjct: 2   FEIEGIVHKDREFG-RKLGFPTANIDRGNEKLVD--LKRGVYLVRVHLPD-GKKKFGVMN 57

Query: 83  IGWNPFYKNKKKSMEVHIIHEFGRDLYDLTLSICVLGYIRPELDFNSL 130
           +G+ P   + +       I +F  DLY   L + VL ++R E  F+S+
Sbjct: 58  VGFRPTVGDARNVKYEVYILDFEGDLYGQRLKLEVLKFMRDEKKFDSI 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	132
d1nb9a_	147	Riboflavin kinase {Human (Homo sapiens) [TaxId: 96	100.0
d1n08a_	154	Riboflavin kinase {Fission yeast (Schizosaccharomy	100.0
d1mrza1	130	Riboflavin kinase domain of bifunctional FAD synth	100.0

>d1nb9a_ b.43.5.1 (A:) Riboflavin kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin kinase-like
family: ATP-dependent riboflavin kinase-like
domain: Riboflavin kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-44  Score=263.20  Aligned_cols=110  Identities=55%  Similarity=1.128  Sum_probs=100.8

Q ss_pred             CeEEEEEEEccCCCCccccCceeecccCCccccCCCCCCCceEEEEEEEcCCCeEEEEEEEecCCCccCCCceEEEEEEc
Q psy7973          22 PYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSLPESFDPGVYYGWSKLSDGPTVYKMVMSIGWNPFYKNKKKSMEVHII  101 (132)
Q Consensus        22 py~i~G~Vv~G~~~G~~~lGfPTANl~~~~~~~lp~~~~~GVYa~~~~~~~~~~~~~~v~niG~~Ptf~~~~~~iEvhil  101 (132)
                      ||+++|+|+||+|+|+|+||||||||.++...++|+++..|||++|+.+.+++ +|+||+|||.||||+++..++|+|+|
T Consensus         4 Py~i~G~Vv~G~~~G~r~LGfPTANl~~~~~~~lp~~~~~GVY~~~v~i~~~~-~y~gi~niG~rPTf~~~~~~~E~h~l   82 (147)
T d1nb9a_           4 PYFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADISTGIYYGWASVGSGD-VHKMVVSIGWNPYYKNTKKSMETHIM   82 (147)
T ss_dssp             SEEEEEECBCCSSSCGGGGTCCCEECCHHHHHTSCTTSCSEEEEEEEEETTCC-CEEEEEEEEECTTSSSCCEEEEEEES
T ss_pred             CEEEEEEEEeCCccCCCccCcCCcCCcCchhhccccccccCceEEEEEecCCC-ccceEEEeccccccccccceEEEEEe
Confidence            99999999999999965799999999887656777655689999999996667 99999999999999988899999999


Q ss_pred             cccCCCCCCCeEEEEEeeecCCCCCCCCCCC
Q psy7973         102 HEFGRDLYDLTLSICVLGYIRPELDFNSLGT  132 (132)
Q Consensus       102 ~df~~dlYg~~i~v~~~~~iR~e~kF~s~~~  132 (132)
                      +||++||||++|+|+|++|||+|+||+|+||
T Consensus        83 ~dF~~dlYG~~i~V~~~~~iR~e~KF~s~~~  113 (147)
T d1nb9a_          83 HTFKEDFYGEILNVAIVGYLRPEKNFDSLES  113 (147)
T ss_dssp             SCCSSCCTTSEEEEEEEEEEECCCCCSSHHH
T ss_pred             ccCCCceeeeEEEEEEEeEecCCcCcCCHHH
Confidence            8899999999999999999999999999874

>d1n08a_ b.43.5.1 (A:) Riboflavin kinase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin kinase-like
family: ATP-dependent riboflavin kinase-like
domain: Riboflavin kinase
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=2.7e-43  Score=259.38  Aligned_cols=106  Identities=53%  Similarity=1.020  Sum_probs=95.8

Q ss_pred             CCeEEEEEEEccCCCCccccCceeecccCCccccC---CCCCCCceEEEEEEEcCCCeEEEEEEEecCCCccCCCceEEE
Q psy7973          21 YPYFTKGIIVKGFGRGSKELGIPTANMCDEAVKSL---PESFDPGVYYGWSKLSDGPTVYKMVMSIGWNPFYKNKKKSME   97 (132)
Q Consensus        21 ~py~i~G~Vv~G~~~G~~~lGfPTANl~~~~~~~l---p~~~~~GVYa~~~~~~~~~~~~~~v~niG~~Ptf~~~~~~iE   97 (132)
                      +||+++|+|+||++||+|+||||||||.++....+   |+   .|||++|+.++ +. +|+||+|||.||||+++++++|
T Consensus        14 yPy~i~G~Vv~G~~~G~R~LGfPTANl~~~~~~~l~~~P~---~GVYa~~v~i~-~~-~y~~v~niG~rPTf~~~~~~~E   88 (154)
T d1n08a_          14 YPIRFEGKVVHGFGRGSKELGIPTANISEDAIQELLRYRD---SGVYFGYAMVQ-KR-VFPMVMSVGWNPYYKNKLRSAE   88 (154)
T ss_dssp             CCEEEEEEEECCSSSCGGGGTCCCEEECGGGTTTTTTTSC---SEEEEEEEEET-TE-EEEEEEEEEECTTCSSCCEEEE
T ss_pred             CCEEEEEEEEeCCccCCcccCcCCeeecCccccccccccc---cceEEEEEeee-ce-eEEEEEeeccchhcccccceEE
Confidence            88999999999999996679999999987643333   66   89999999994 66 9999999999999998889999


Q ss_pred             EEEccccCC-CCCCCeEEEEEeeecCCCCCCCCCCC
Q psy7973          98 VHIIHEFGR-DLYDLTLSICVLGYIRPELDFNSLGT  132 (132)
Q Consensus        98 vhil~df~~-dlYg~~i~v~~~~~iR~e~kF~s~~~  132 (132)
                      |||| ||++ ||||++|+|+|++|||+|+||+|+||
T Consensus        89 vhil-df~~~dlYg~~i~V~~~~~iR~e~kF~s~e~  123 (154)
T d1n08a_          89 VHLI-ERQGEDFYEEIMRVIVLGYIRPELNYAGLDK  123 (154)
T ss_dssp             EEET-TCCSCCCTTCEEEEEEEEEEECCCCCCCHHH
T ss_pred             EEEe-cccchhhcCEEEEEEEeeeccCCcccCCHHH
Confidence            9999 8985 99999999999999999999999874

>d1mrza1 b.43.5.1 (A:159-288) Riboflavin kinase domain of bifunctional FAD synthetase {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin kinase-like
family: ATP-dependent riboflavin kinase-like
domain: Riboflavin kinase domain of bifunctional FAD synthetase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.3e-41  Score=244.21  Aligned_cols=104  Identities=34%  Similarity=0.513  Sum_probs=76.2

Q ss_pred             eEEEEEEEccCCCCccccCceeecccCCccccC-CCCCCCceEEEEEEEcCCCeEEEEEEEecCCCccCC-CceEEEEEE
Q psy7973          23 YFTKGIIVKGFGRGSKELGIPTANMCDEAVKSL-PESFDPGVYYGWSKLSDGPTVYKMVMSIGWNPFYKN-KKKSMEVHI  100 (132)
Q Consensus        23 y~i~G~Vv~G~~~G~~~lGfPTANl~~~~~~~l-p~~~~~GVYa~~~~~~~~~~~~~~v~niG~~Ptf~~-~~~~iEvhi  100 (132)
                      |+++|+|+||+++|| +||||||||.+++..++ |+   .|||++|+.+.+++ +|+|++|||+||||++ ....+|+||
T Consensus         2 y~i~G~V~~G~~~Gr-~lGfPTANl~~~~~~~~~p~---~GVY~~~v~~~~~~-~~~~v~~iG~~PTf~~~~~~~~E~hi   76 (130)
T d1mrza1           2 FEIEGIVHKDREFGR-KLGFPTANIDRGNEKLVDLK---RGVYLVRVHLPDGK-KKFGVMNVGFRPTVGDARNVKYEVYI   76 (130)
T ss_dssp             CEEEEEC------------CCCEECBCCSSCBCCCC---SEEEEEEEECGGGC-EEEEEEEEEEC------CCEEEEEEE
T ss_pred             EEEEEEEEeCCcccc-ccCCCCCCcccccccccccc---cceeEEEEEEeecc-ccceEEEEEeecccccccceeEEEEE
Confidence            899999999999996 69999999998765565 45   89999999986567 8999999999999975 457899999


Q ss_pred             ccccCCCCCCCeEEEEEeeecCCCCCCCCCCC
Q psy7973         101 IHEFGRDLYDLTLSICVLGYIRPELDFNSLGT  132 (132)
Q Consensus       101 l~df~~dlYg~~i~v~~~~~iR~e~kF~s~~~  132 (132)
                      + ||++|+||+.|+|+|++|||+|+||+|+||
T Consensus        77 ~-df~~dlYg~~i~v~f~~~lR~e~kF~s~~e  107 (130)
T d1mrza1          77 L-DFEGDLYGQRLKLEVLKFMRDEKKFDSIEE  107 (130)
T ss_dssp             T-TCCSCCTTCEEEEEEEEEEECCCC----CC
T ss_pred             c-ccCcccCCCEEEEEEEEEeCCCcCcCCHHH
Confidence            9 999999999999999999999999999986