Psyllid ID: psy7977

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220-----
EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEWGFHLLRGFSSLGSLWNGWSERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADGSTPVRPSASTQAQNTTSSTISSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFERNFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQRYNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKIIPLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFTKTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAKVDANGERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEHCKGPVVEMSSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHLVGDGLVQCR
cccEEEEEEccEEEEEEEcccccccEEEEEEcccccccccEEEEEEEccEEEEEEEcccccEEEEEEEEcccccccccccEEEEEcccccEEEEEEEEcccccccEEEEccEEEEccccccccEEEEEcccEEEEEEEcccEEEEEEccccccccccEEEEEcccccccccEEEEEEcccccccEEEEEEccccccEEEEEEEccEEEEEEEEccccccEEEEEEEccccccccEEEEEccccEEEEEEcccEEEEEEcccccccccEEEEEEEccccEEEEccccEEEEEcccccEEEEEccccccEEEEEEEcccEEEEEEcccEEEEEEEcccEEEEEEEEcccEEEEEEcccccccccccccccccEEEEEEEcccEEEEEEccccccEEEcccccccccEEEEEEEEEccEEEEEEEcccEEEEEEEcccccccccEEEEEEEEcccEEEEEEEccccEEEEEccccEEEEEEccEEEEEEcccccccEEEcccccccccEEEEEEcccEEEEEEcccccEEEEEEEccccccEEEEEccccEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccEEEcccccccEEEEEEccEEEEEEEEccccccEEEEEEccEEEEEEEEEcccccccEEEEEEcccccEEEEEEEcEEEEEEccccccEEEEEEEEccEEEEEEEEEcccccccEEEEEEccccEEEEEEEcccccEEEEEcEEccccccccccccccEEEEEcccccEEEEEEEccEEEEEEccccccccccccccccccEEEEEEEEEcccccEEEEEEEcccccEEEEEEEEcccccEEEcccccccccccccEEcccccccccEEEEcccEEEEEEcccEEEEcccccccccEEEEEEEEccccEEEEEcccccEEEEEEEEEccccccEEEccccccccccccccccccccccEEccccccccccccccccccccEEEEEEEEEEccccEEEEEEEccccccEEEEEEEEEcccccEEEEEEEEEEcccccccccEEEEEEEEEccEEEEEEEEEEEccEEEEcccccEEEEEEccEEEEEEccccccEEEEEEEcccEEEEEEEEEccEEEEEEccccEEEEEEEccccEEEEEEccccccEEEEEEEEccccEEEEcccccEEEEEEcccccccccccccEEEEEEEEEccEEEEEc
cccEEEEEccccEEEEEEEEcccccEEEEEEcccccccccEEEEEEccccEEEEEccccccccccccEEEEEEEEcccccEEEEEEccccEEEEEEEEcccccccEEEEEEEEEccccccHHHHHHHHcccEEEEEEEccccEEEEEEccccccccHEEEEcccccccccEEEEEEEcccccccEEEEEEcccccccHHEEEccccEEHHEEcccccccEEEEEEcccccccccEEEEEEcccEEEEEEcccEEEEEccccccccccEEEEEEcccccEEEEccccEEEEEccccccEcccccccccEEEEEEEcccEEEEEEccEEEEEEEccccEEEEEEEEcccEEEEEEcccccccccccccccccEEEEEEccccEEEEEEccccHHHcccccccccccccEEEEEEcccEEEEEEEcccEEEEEEEEccccccccccEEEcccccEEEEEEEEccccEEEEEccccEEEEEcccEEEEEccccccHcccccccHHHccccEEEEEccEEEEEEEHHHHHHcEEEccccccccEEEEEccccEEEEEEEccccccccccccccccccEEEccccccccccccccccccccccccccccccccEEEEEEEEEEEcccEccccccHHHcEEEEEEcccEEEEEEccccccccccccccEEEEEEEEEcccccHHEEEEEcccccccEEEEEcccEEEEEEEcccccEEEEEEccEEEEEEEEEEccccccccEEEEEEcccEEEEEEEccccccEEEEEEEEcccccccccEccccEEEEEcccccEEEEEEEcccEEEEEccccccccccccccHHHccEEEEEEEccccccEEEEEEEcccccEEEEEEEEccccEEEccccccccccccccEEEEccccccEEEEEEccEEEEEccccccccccccccccEEEEEEEEcccccEEEEEcccccEEEEEEEEccccccccEEEEEEEEEcccccccHHEEEccccEEEEEEccccccccccccccccccEEEEEEccccccEEEEEEEccccccEEEEEEEccccccEEEEEEccEEccccccccccEEEEEEEcccEEEEEEEEccccccHHHHHcccEEEEEEccEEEEEEcccHHHHHHHHcccccEEEEEEEEcccEEEEEccHcEEEEEEEccccccEEEEEccccccEEEEEEEEccccEEEEcccccEEEEEcccccccHHHHccccccccHHHcccccEEcc
EGSLRIIRNgigieehacidlpgikGIWAlsigspknldntLVLSFVGHTRVLTLSGAEWGFHLLRGFSSlgslwngwserYLLGDLAGRLFMLLLEKEekmdgtfsvkepkvellgeisipecltyldngvvfvgsrlgdsqlvklnrspdengtYVSVMESFTNLAPIIDMVVVDLerqgqgqlvtcsggfkegslRIIRNgigieehacidlpgikGIWAlsigspknldntLVLSFVGHTRvltlsgaeveetemggftsdqqtfycgnvdprtvlqvtpsAAILISTEskarvssweppngksiSVVSCNknqvlcatgcDVYYLEVHGSEIKQLAHRALEYEVacldisplsneetssepAKAQLAAVGLWTDISARLlslpsleevckeplggeiiprsilmtcFEGHCYLLVAlgdgsmfyfsldpasgrltdkkkvtlgtqptvLKTFRslsttnvfacsdrptviyssnhklvfSNVNLRQVNHMCSlnaesypdslalatdstftfgtIDEIQKLHirtvplgeaprriayqessqtfgVITTridiqeadgstpvrpsastqaqnttsstisslsyikpgstkqstanqpadfnMEVEVHNLLIIdqntfernftsstdlnlvvaknnrieihtvtpeglrpvkEIFLYGKIAVMKffrgptdkkdLLFIITQRtdlnlvvaknnrieihtvtpeglrpvkEIFLYGKIAVMKffrgptdkkDLLFIITQRYNAMILECRGDIDNLEILTKAHgnvsdrigkpsengiiaiidpEARVIGLRLYNGlfkiiplekdnfelkASSIRMEELEIQDVqflhgcqnptiicihqdvngrhvktheislkekeftktpwkqdniemeaslvipvpeplggaiiigqesilyhsgksyvavAPQIIKSSTIVCYAKVDANGERYLLGDLAGRLFMLLLEKEekmdgtfsvkepkvellgehckgpvvemsslsyikpgstkqstanqpadfnMEVEVHNLLIIDQNTFEILHahqlfpgeYALSLISskfgedpntyFVLGTavvhpeenepkqgRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEeisrdynpnwmtsIEILDdelflgaensynlficqkdsaatsdedrthlqevgtVHLVgdglvqcr
EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEWGFHLLRGFSSLGSLWNGWSERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQlvtcsggfkegsLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILIsteskarvssweppnGKSISVVSCNKNQVLCATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPAsgrltdkkkvtlgtqptvlktfrslsttnvfacsdrptviySSNHKLVFSNVNLRQVNHMCSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPlgeaprriayqessqtfgVITTRIDIQeadgstpvrpsastqaqnttsstisslsyikpgsTKQSTANQPADFNMEVEVHNLLIIDQNTFERNFTSSTDLNLVVaknnrieihtvtpeglrpvKEIFLYGKIAVMKFFRGPTDKKDLLFIITQrtdlnlvvaknnrieihtvtpeglrpvKEIFLYGKIAVMKFFRGPTDKKDLLFIITQRYNAMILECRGDIDNLEILTKAHgnvsdrigkpsengiiaiIDPEARVIGLRLYNGLFKIIPLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHeislkekeftktpwkqdNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAKVDANGERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEHCKGPVVEMSSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLqevgtvhlvgdglvqcr
EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEWGFHLLRGFSSLGSLWNGWSERYLLGDLAGRLFmlllekeekmDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADGSTPVRPsastqaqnttsstisslsYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFERNFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQRYNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKIIPLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFTKTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAKVDANGERYLLGDLAGRLFmlllekeekmDGTFSVKEPKVELLGEHCKGPVVEMSSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHLVGDGLVQCR
****RIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEWGFHLLRGFSSLGSLWNGWSERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLNR***ENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILIST***************SISVVSCNKNQVLCATGCDVYYLEVHGSEIKQLAHRALEYEVACLDIS**************QLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDI**********************************************FNMEVEVHNLLIIDQNTFERNFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQRYNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKIIPLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFTKTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAKVDANGERYLLGDLAGRLFMLLLEKEEKMDGTFSVK*PKVELLGEHCKGPVV***********************FNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPE****KQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQK*************QEVGTVHLVGDGL****
*GSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEWGFHLLRGFSSLGSLWNGWSERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRID******************************************NQPADFNMEVEVHNLLIIDQNTFERNFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQRYNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKIIPLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFTKTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAKVDANGERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEHCKGPVVEMSSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQ***************EVGTVHLVGDGLVQCR
EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEWGFHLLRGFSSLGSLWNGWSERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTE***********NGKSISVVSCNKNQVLCATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISP*************QLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQE************************SLSYIKP*********QPADFNMEVEVHNLLIIDQNTFERNFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQRYNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKIIPLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFTKTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAKVDANGERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEHCKGPVVEMSSLSYIK**********QPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHLVGDGLVQCR
*GSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEWGFHLLRGFSSLGSLWNGWSERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEA********SASTQ**NTTSSTISSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFERNFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQRYNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKIIPLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFTKTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAKVDANGERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEHCKGPVVEMSSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHLVGDGLVQCR
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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EGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEWGFHLLRGFSSLGSLWNGWSERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADGSTPVRPSASTQAQNTTSSTISSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFERNFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQRYNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKIIPLEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFTKTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAKVDANGERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEHCKGPVVEMSSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRIIIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHLVGDGLVQCR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1225 2.2.26 [Sep-21-2011]
Q805F91140 DNA damage-binding protei yes N/A 0.432 0.464 0.672 0.0
Q6P6Z01140 DNA damage-binding protei N/A N/A 0.432 0.464 0.659 0.0
Q3U1J41140 DNA damage-binding protei yes N/A 0.432 0.464 0.663 0.0
A1A4K31140 DNA damage-binding protei yes N/A 0.432 0.464 0.661 0.0
Q5R6491140 DNA damage-binding protei yes N/A 0.432 0.464 0.661 0.0
Q165311140 DNA damage-binding protei yes N/A 0.432 0.464 0.661 0.0
P331941140 DNA damage-binding protei N/A N/A 0.432 0.464 0.661 0.0
Q9ESW01140 DNA damage-binding protei yes N/A 0.432 0.464 0.652 0.0
Q9XYZ51140 DNA damage-binding protei yes N/A 0.433 0.465 0.641 0.0
Q9M0V31088 DNA damage-binding protei yes N/A 0.377 0.424 0.533 1e-140
>sp|Q805F9|DDB1_CHICK DNA damage-binding protein 1 OS=Gallus gallus GN=DDB1 PE=2 SV=1 Back     alignment and function desciption
 Score =  731 bits (1888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/544 (67%), Positives = 430/544 (79%), Gaps = 14/544 (2%)

Query: 81  RYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLG 140
           RYLLGD+ GRLFMLLLEKEE+MDGT ++K+ +VELLGE SI ECLTYLDNGVVFVGSRLG
Sbjct: 270 RYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLG 329

Query: 141 DSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRI 200
           DSQLVKLN   +E G+YV  ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKEGSLRI
Sbjct: 330 DSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRI 389

Query: 201 IRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMG 260
           IRNGIGI EHA IDLPGIKG+W L   S + +DN LVLSFVG TRVL L+G EVEETE+ 
Sbjct: 390 IRNGIGIHEHASIDLPGIKGLWPLRSDSHREMDNMLVLSFVGQTRVLMLNGEEVEETELT 449

Query: 261 GFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVL 320
           GF  DQQTF+CGNV  + ++Q+T ++  L+S E KA VS W+ PNGK+ISV SCN NQV+
Sbjct: 450 GFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPNGKNISVASCNSNQVV 509

Query: 321 CATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDI 380
            A G  +YYLE+   E++Q+    +E+EVACLDI+PL +    S      L A+GLWTDI
Sbjct: 510 VAVGRALYYLEIRPQELRQINCTEMEHEVACLDITPLGDTNGMSP-----LCAIGLWTDI 564

Query: 381 SARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLT 440
           SAR+L LPS E + KE LGGEIIPRSILMT FE   YLL ALGDG++FYF L   +G L+
Sbjct: 565 SARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLSLETGLLS 624

Query: 441 DKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNA 500
           D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+MC LN+
Sbjct: 625 DRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNS 684

Query: 501 ESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQE 560
           + YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 685 DGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQD 744

Query: 561 AD-GSTPVRPSASTQAQNTTSSTISSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQ 619
           A  G+T +RPSASTQA +++ ST    S         STA     F  EVEVHNLLIIDQ
Sbjct: 745 ASGGTTALRPSASTQALSSSVSTSKLFS--------SSTAPHETSFGEEVEVHNLLIIDQ 796

Query: 620 NTFE 623
           +TFE
Sbjct: 797 HTFE 800
Required for DNA repair. Binds to DDB2 to form the UV-damaged DNA-binding protein complex (the UV-DDB complex). The UV-DDB complex may recognize UV-induced DNA damage and recruit proteins of the nucleotide excision repair pathway (the NER pathway) to initiate DNA repair. Also appears to function as a component of numerous distinct DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. The functional specificity of the DCX E3 ubiquitin-protein ligase complex is determined by the variable substrate recognition component recruited by DDB1.
Gallus gallus (taxid: 9031)
>sp|Q6P6Z0|DDB1_XENLA DNA damage-binding protein 1 OS=Xenopus laevis GN=ddb1 PE=2 SV=1 Back     alignment and function description
>sp|Q3U1J4|DDB1_MOUSE DNA damage-binding protein 1 OS=Mus musculus GN=Ddb1 PE=1 SV=2 Back     alignment and function description
>sp|A1A4K3|DDB1_BOVIN DNA damage-binding protein 1 OS=Bos taurus GN=DDB1 PE=2 SV=1 Back     alignment and function description
>sp|Q5R649|DDB1_PONAB DNA damage-binding protein 1 OS=Pongo abelii GN=DDB1 PE=2 SV=1 Back     alignment and function description
>sp|Q16531|DDB1_HUMAN DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1 Back     alignment and function description
>sp|P33194|DDB1_CHLAE DNA damage-binding protein 1 OS=Chlorocebus aethiops GN=DDB1 PE=1 SV=1 Back     alignment and function description
>sp|Q9ESW0|DDB1_RAT DNA damage-binding protein 1 OS=Rattus norvegicus GN=Ddb1 PE=2 SV=1 Back     alignment and function description
>sp|Q9XYZ5|DDB1_DROME DNA damage-binding protein 1 OS=Drosophila melanogaster GN=pic PE=1 SV=1 Back     alignment and function description
>sp|Q9M0V3|DDB1A_ARATH DNA damage-binding protein 1a OS=Arabidopsis thaliana GN=DDB1A PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1225
2420107431148 DNA damage-binding protein, putative [Pe 0.436 0.466 0.712 0.0
3454982951140 PREDICTED: DNA damage-binding protein 1- 0.431 0.463 0.692 0.0
1571288641138 DNA repair protein xp-e [Aedes aegypti] 0.430 0.463 0.688 0.0
1700575151138 conserved hypothetical protein [Culex qu 0.430 0.463 0.688 0.0
157128866980 DNA repair protein xp-e [Aedes aegypti] 0.430 0.537 0.688 0.0
3071861381136 DNA damage-binding protein 1 [Camponotus 0.430 0.463 0.696 0.0
3214785151158 hypothetical protein DAPPUDRAFT_303245 [ 0.442 0.468 0.674 0.0
3407145891141 PREDICTED: DNA damage-binding protein 1- 0.431 0.463 0.697 0.0
3800259011141 PREDICTED: LOW QUALITY PROTEIN: DNA dama 0.431 0.463 0.699 0.0
3287883891141 PREDICTED: DNA damage-binding protein 1- 0.431 0.463 0.699 0.0
>gi|242010743|ref|XP_002426118.1| DNA damage-binding protein, putative [Pediculus humanus corporis] gi|212510165|gb|EEB13380.1| DNA damage-binding protein, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  771 bits (1992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/547 (71%), Positives = 449/547 (82%), Gaps = 12/547 (2%)

Query: 81  RYLLGDLAGRLFMLLLEKEEKMDGTFSVKEP--KVELLGEISIPECLTYLDNGVVFVGSR 138
           RYLLGD+AG LFMLLLE EEK+DGT  VKE   KVELLGEISIPE +TYLDNGV+F+GSR
Sbjct: 270 RYLLGDMAGHLFMLLLETEEKIDGTPCVKENGLKVELLGEISIPEAITYLDNGVLFIGSR 329

Query: 139 LGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSL 198
            GDSQLVKLN SPDENG YV++ME+FTNLAPI+DMVVVDLERQGQGQLVTCSG FKEGSL
Sbjct: 330 CGDSQLVKLNTSPDENGYYVTIMEAFTNLAPILDMVVVDLERQGQGQLVTCSGAFKEGSL 389

Query: 199 RIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETE 258
           RIIRNGIGI+EHA IDL GIKG+WAL        DNT+VL+FVG TR+LTL+G EVEETE
Sbjct: 390 RIIRNGIGIQEHATIDLLGIKGMWALRASLDSVYDNTIVLAFVGQTRILTLNGEEVEETE 449

Query: 259 MGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQ 318
           + GF SDQQ+FYCGNV+   ++Q+TP+ A LIS E+K  VS W PP GK+ISVV+CN  Q
Sbjct: 450 IPGFLSDQQSFYCGNVENNNMIQLTPTCARLISVETKQLVSEWRPPAGKTISVVACNTVQ 509

Query: 319 VLCATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAK-AQLAAVGLW 377
            +CA G D+YYLE+  +E+ Q  +  LEYEVACLDI+PL      SE  K A + AVGLW
Sbjct: 510 AICAAGSDLYYLEILKNELVQKGNTTLEYEVACLDITPL------SEGGKTADIIAVGLW 563

Query: 378 TDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASG 437
           TDISAR+L LP LEE+ +E LGGEIIPRSILMTCFE   YLL ALGDGSMFYFSL+  +G
Sbjct: 564 TDISARILKLPDLEELNREYLGGEIIPRSILMTCFENINYLLCALGDGSMFYFSLNNQNG 623

Query: 438 RLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCS 497
            L+DKKKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VNHMCS
Sbjct: 624 ILSDKKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNHMCS 683

Query: 498 LNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRID 557
           LN+E+YPDSLALATDST T GTIDEIQKLHIRTVPLGE+PRRIAYQE++QTFGVIT R+D
Sbjct: 684 LNSEAYPDSLALATDSTVTIGTIDEIQKLHIRTVPLGESPRRIAYQETTQTFGVITMRMD 743

Query: 558 IQEADGSTPVRPSASTQAQ-NTTSSTISSLSYIKPGSTKQSTANQPADFNMEVEVHNLLI 616
           + +  G  PV+ SASTQAQ  ++SS I     +K G    ++ N  A+F  EVEVHNLL+
Sbjct: 744 VHQRSGLIPVKQSASTQAQSISSSSNIGGAHNLKSGPA--ASINSFAEFGQEVEVHNLLV 801

Query: 617 IDQNTFE 623
           IDQ+TFE
Sbjct: 802 IDQHTFE 808

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|345498295|ref|XP_001607743.2| PREDICTED: DNA damage-binding protein 1-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|157128864|ref|XP_001655231.1| DNA repair protein xp-e [Aedes aegypti] gi|108882186|gb|EAT46411.1| AAEL002407-PB [Aedes aegypti] Back     alignment and taxonomy information
>gi|170057515|ref|XP_001864517.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167876915|gb|EDS40298.1| conserved hypothetical protein [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|157128866|ref|XP_001655232.1| DNA repair protein xp-e [Aedes aegypti] gi|108882187|gb|EAT46412.1| AAEL002407-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|307186138|gb|EFN71863.1| DNA damage-binding protein 1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|321478515|gb|EFX89472.1| hypothetical protein DAPPUDRAFT_303245 [Daphnia pulex] Back     alignment and taxonomy information
>gi|340714589|ref|XP_003395809.1| PREDICTED: DNA damage-binding protein 1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|380025901|ref|XP_003696702.1| PREDICTED: LOW QUALITY PROTEIN: DNA damage-binding protein 1-like [Apis florea] Back     alignment and taxonomy information
>gi|328788389|ref|XP_396048.3| PREDICTED: DNA damage-binding protein 1-like isoform 1 [Apis mellifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1225
UNIPROTKB|Q6P6Z01140 ddb1 "DNA damage-binding prote 0.435 0.467 0.628 1.3e-270
ZFIN|ZDB-GENE-040426-12721140 ddb1 "damage specific DNA bind 0.435 0.467 0.624 3.9e-267
FB|FBgn02609621140 pic "piccolo" [Drosophila mela 0.433 0.465 0.613 9.6e-253
UNIPROTKB|F1NVV21123 DDB1 "DNA damage-binding prote 0.499 0.544 0.573 2.7e-178
UNIPROTKB|F1NVV31119 DDB1 "DNA damage-binding prote 0.499 0.546 0.573 2.7e-178
UNIPROTKB|F1P4I81120 DDB1 "DNA damage-binding prote 0.499 0.546 0.573 2.7e-178
UNIPROTKB|Q805F91140 DDB1 "DNA damage-binding prote 0.499 0.536 0.573 2.7e-178
MGI|MGI:12023841140 Ddb1 "damage specific DNA bind 0.499 0.536 0.569 2.7e-178
UNIPROTKB|E2R9E31140 DDB1 "Uncharacterized protein" 0.499 0.536 0.569 3.5e-178
UNIPROTKB|J9NVR71084 DDB1 "Uncharacterized protein" 0.499 0.564 0.569 3.5e-178
UNIPROTKB|Q6P6Z0 ddb1 "DNA damage-binding protein 1" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
 Score = 1725 (612.3 bits), Expect = 1.3e-270, Sum P(2) = 1.3e-270
 Identities = 345/549 (62%), Positives = 414/549 (75%)

Query:    76 NGWSERYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFV 135
             NG   RYLLGD+ GRLF          DG+ ++K+ +VELLGE SI ECLTYLDNGVVFV
Sbjct:   267 NG--SRYLLGDMEGRLFMLLLEKEEQMDGSVTLKDLRVELLGETSIAECLTYLDNGVVFV 324

Query:   136 GSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKE 195
             GSRLGDSQLVKL    +E G+YV VME+FTNL PI+DM VVDLERQGQGQLVTCSG FKE
Sbjct:   325 GSRLGDSQLVKLTTESNEQGSYVVVMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKE 384

Query:   196 GSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVE 255
             GSLRIIRNGIGI EHA IDLPGIKG+W L + + ++ D+TLVLSFVG TRVLTL+G EVE
Sbjct:   385 GSLRIIRNGIGIHEHASIDLPGIKGLWPLRVAADRDTDDTLVLSFVGQTRVLTLTGEEVE 444

Query:   256 ETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCN 315
             ET++ GF  DQQTF+CGNV  + ++Q+T ++  L+S   +  VS W+ P G+ +SV SCN
Sbjct:   445 ETDLAGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQNPQNLVSEWKEPQGRKVSVCSCN 504

Query:   316 KNQVLCATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVG 375
               QVL A G  +YYLE+H  E++Q +   +E+EVACLD++PL   +T S      L A+G
Sbjct:   505 SRQVLLAVGRVLYYLEIHPGELRQTSCTEMEHEVACLDVTPLGGNDTLSS-----LCAIG 559

Query:   376 LWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPA 435
             LWTDISAR+LSLP  + + KE LGGEIIPRSILMT FE   YLL ALGDG++FYFSL+  
Sbjct:   560 LWTDISARILSLPGFQLLHKEMLGGEIIPRSILMTSFESSHYLLCALGDGALFYFSLNTD 619

Query:   436 SGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHM 495
             +G L+D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+M
Sbjct:   620 TGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYM 679

Query:   496 CSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTR 555
             C LN+E YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++R
Sbjct:   680 CPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLFESPRKICYQEVSQCFGVLSSR 739

Query:   556 IDIQEADG-STPVRPXXXXXXXXXXXXXXXXXXYIKPGSTKQSTANQPADFNMEVEVHNL 614
             I++Q+A G S+P+RP                      GST     +    F  EVEVHNL
Sbjct:   740 IEVQDASGGSSPLRPSASTQALSSSVSCSKLFS----GSTSPHETS----FGEEVEVHNL 791

Query:   615 LIIDQNTFE 623
             LIIDQ+TFE
Sbjct:   792 LIIDQHTFE 800
GO:0005634 "nucleus" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISS
GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=ISS
GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=ISS
GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS
GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS
ZFIN|ZDB-GENE-040426-1272 ddb1 "damage specific DNA binding protein 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0260962 pic "piccolo" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1NVV2 DDB1 "DNA damage-binding protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NVV3 DDB1 "DNA damage-binding protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P4I8 DDB1 "DNA damage-binding protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q805F9 DDB1 "DNA damage-binding protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1202384 Ddb1 "damage specific DNA binding protein 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2R9E3 DDB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NVR7 DDB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ESW0DDB1_RATNo assigned EC number0.65250.43260.4649yesN/A
Q3U1J4DDB1_MOUSENo assigned EC number0.66360.43260.4649yesN/A
A1A4K3DDB1_BOVINNo assigned EC number0.66170.43260.4649yesN/A
Q9XYZ5DDB1_DROMENo assigned EC number0.64150.43340.4657yesN/A
Q805F9DDB1_CHICKNo assigned EC number0.67270.43260.4649yesN/A
Q9M0V3DDB1A_ARATHNo assigned EC number0.53360.37710.4246yesN/A
Q16531DDB1_HUMANNo assigned EC number0.66170.43260.4649yesN/A
Q5R649DDB1_PONABNo assigned EC number0.66170.43260.4649yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1225
pfam03178318 pfam03178, CPSF_A, CPSF A subunit region 3e-56
pfam10433513 pfam10433, MMS1_N, Mono-functional DNA-alkylating 6e-53
pfam10433513 pfam10433, MMS1_N, Mono-functional DNA-alkylating 3e-21
pfam10433513 pfam10433, MMS1_N, Mono-functional DNA-alkylating 6e-07
COG51611319 COG5161, SFT1, Pre-mRNA cleavage and polyadenylati 1e-04
>gnl|CDD|217409 pfam03178, CPSF_A, CPSF A subunit region Back     alignment and domain information 
 Score =  197 bits (504), Expect = 3e-56
 Identities = 68/221 (30%), Positives = 109/221 (49%), Gaps = 10/221 (4%)

Query: 1005 HNLLIIDQNTFEILHAHQLFPGEYALSLIS--SKFGEDPNTYFVLGTAVVHPEENEPKQG 1062
              + ++D  T+E++   +L   E  LS+ S   +  E    Y V+GTA    E+   + G
Sbjct: 2    SCIRLVDPITWEVIDTLELEENEAVLSVKSVNLEDSEGRKEYLVVGTAFDLGEDPAARSG 61

Query: 1063 RIIIFHYDDG----KLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLE 1118
            RI +F   +     KL+ + + E+KGA  ++CEF G+LLA     +R+++   + +L  +
Sbjct: 62   RIYVFEIIEPETNRKLKLVHKTEVKGAVTALCEFQGRLLAGQGQKLRVYDLG-KDKLLPK 120

Query: 1119 CSHFNNIIA-LFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEIL- 1176
                  I   + LKV G+ I+VGDLM+S+T L Y          +RD  P W+T+ E L 
Sbjct: 121  AFLDTPITYVVSLKVFGNRIIVGDLMKSVTFLGYDEEPYRLILFARDTQPRWVTAAEFLV 180

Query: 1177 DDELFLGAENSYNLFICQKD-SAATSDEDRTHLQEVGTVHL 1216
            D +  LGA+   NL + + D  A  S +    L      HL
Sbjct: 181  DYDTILGADKFGNLHVLRYDPEAPESLDGDPRLLHRAEFHL 221

This family includes a region that lies towards the C-terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs. The function of the aligned region is unknown but may be involved in RNA/DNA binding. Length = 318
>gnl|CDD|220751 pfam10433, MMS1_N, Mono-functional DNA-alkylating methyl methanesulfonate N-term Back     alignment and domain information
>gnl|CDD|220751 pfam10433, MMS1_N, Mono-functional DNA-alkylating methyl methanesulfonate N-term Back     alignment and domain information
>gnl|CDD|220751 pfam10433, MMS1_N, Mono-functional DNA-alkylating methyl methanesulfonate N-term Back     alignment and domain information
>gnl|CDD|227490 COG5161, SFT1, Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1225
KOG1897|consensus 1096 100.0
KOG1898|consensus 1205 100.0
KOG1896|consensus 1366 100.0
COG5161 1319 SFT1 Pre-mRNA cleavage and polyadenylation specifi 100.0
PF10433504 MMS1_N: Mono-functional DNA-alkylating methyl meth 100.0
KOG1897|consensus 1096 100.0
PF03178321 CPSF_A: CPSF A subunit region; InterPro: IPR004871 100.0
KOG1896|consensus 1366 99.97
PF10433504 MMS1_N: Mono-functional DNA-alkylating methyl meth 99.92
KOG1898|consensus 1205 99.75
COG5161 1319 SFT1 Pre-mRNA cleavage and polyadenylation specifi 99.48
KOG0291|consensus893 97.89
KOG0306|consensus 888 97.58
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 96.63
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 96.56
PRK11028330 6-phosphogluconolactonase; Provisional 96.29
PRK11028330 6-phosphogluconolactonase; Provisional 96.28
PF03178321 CPSF_A: CPSF A subunit region; InterPro: IPR004871 96.28
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 96.27
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 96.21
KOG0318|consensus603 95.99
KOG2048|consensus691 95.99
KOG2110|consensus391 95.75
KOG0647|consensus347 95.53
KOG2055|consensus514 95.46
KOG0283|consensus712 95.17
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 95.14
PF08596395 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; 95.06
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 94.95
KOG2321|consensus703 94.66
KOG0291|consensus893 94.62
KOG1036|consensus323 94.55
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 94.47
PF14727418 PHTB1_N: PTHB1 N-terminus 94.43
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 94.39
KOG0310|consensus487 94.34
PLN00181793 protein SPA1-RELATED; Provisional 94.33
KOG0319|consensus775 94.3
KOG0650|consensus733 94.23
KOG1539|consensus910 94.01
KOG0649|consensus325 93.96
KOG2110|consensus391 93.82
PTZ00420568 coronin; Provisional 93.38
PF02239369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 93.19
KOG1407|consensus313 92.98
KOG0306|consensus888 92.83
KOG1036|consensus323 91.99
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 91.49
KOG1446|consensus311 91.48
KOG0296|consensus 399 91.38
KOG1274|consensus933 90.94
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 89.82
KOG0299|consensus479 89.75
PTZ00421493 coronin; Provisional 89.53
PF14727418 PHTB1_N: PTHB1 N-terminus 89.23
KOG0296|consensus399 89.16
KOG2114|consensus933 89.11
KOG0289|consensus506 88.86
PLN00181793 protein SPA1-RELATED; Provisional 88.8
KOG0285|consensus460 88.76
KOG1538|consensus 1081 88.44
KOG3881|consensus412 88.34
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 88.29
KOG0647|consensus347 88.22
KOG2106|consensus626 88.02
KOG0266|consensus456 87.97
KOG0294|consensus362 87.93
KOG2111|consensus346 87.9
KOG2106|consensus 626 87.67
PTZ00420568 coronin; Provisional 87.36
PF00780275 CNH: CNH domain; InterPro: IPR001180 Based on sequ 86.96
KOG0316|consensus307 86.51
PF00780275 CNH: CNH domain; InterPro: IPR001180 Based on sequ 86.4
KOG0282|consensus503 86.4
PF14783111 BBS2_Mid: Ciliary BBSome complex subunit 2, middle 85.94
KOG1539|consensus910 85.44
KOG0279|consensus315 85.26
KOG0305|consensus484 85.03
KOG0318|consensus603 84.95
PTZ00421493 coronin; Provisional 84.73
KOG0278|consensus334 83.8
KOG1274|consensus933 83.5
KOG0283|consensus712 83.44
KOG0277|consensus311 83.15
KOG0646|consensus476 81.77
KOG1273|consensus 405 80.64
KOG0266|consensus456 80.08
>KOG1897|consensus Back     alignment and domain information 
Probab=100.00  E-value=3.2e-134  Score=1201.66  Aligned_cols=746  Identities=57%  Similarity=0.930  Sum_probs=694.3

Q ss_pred             CeEEEEE--------eecCCCCCCCceeEEeeecceEEEEEeCCcceeEEeeccCCCceeeeec------CCeEEEEEcC
Q psy7977          23 GIKGIWA--------LSIGSPKNLDNTLVLSFVGHTRVLTLSGAEWGFHLLRGFSSLGSLWNGW------SERYLLGDLA   88 (1225)
Q Consensus        23 ~~~~~~~--------l~~~~P~plGG~Lv~~~vg~n~liyvDq~~~~~~~~~~l~~~~~ifv~~------~~~~LL~~e~   88 (1225)
                      =++|-|+        +.+++|.|.||+||   +|++.|+|+++.....  +.|+.-.++.++.|      ..+|||+|++
T Consensus       204 ~~~~~w~~~v~~~a~~li~VP~~~gGvlV---~ge~~I~Y~~~~~~~a--i~p~~~~~~t~~~~~~v~~~~~~yLl~d~~  278 (1096)
T KOG1897|consen  204 FVKGPWSNNVDNGASMLIPVPSPIGGVLV---IGEEFIVYMSGDNFVA--IAPLTAEQSTIVCYGRVDLQGSRYLLGDED  278 (1096)
T ss_pred             ccccccccccccCCceeeecCCCCceEEE---EeeeEEEEeeCCceeE--ecccccCCceEEEcccccCCccEEEEecCC
Confidence            4678883        44578999999999   9999999999965333  45554335667766      7889999999


Q ss_pred             CCEEEEEEEeCcccCCceeeee--cEEEEecccCcceeEEEecCCeEEEEeecCCeEEEEEeeCCCCCCCceEEEeeeec
Q psy7977          89 GRLFMLLLEKEEKMDGTFSVKE--PKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLNRSPDENGTYVSVMESFTN  166 (1225)
Q Consensus        89 G~Ly~l~l~~d~~~~Gr~~Vs~--i~i~~~~tis~~SsL~~L~~g~LFvGS~~GDS~L~~i~~~~ddd~~~l~v~d~l~N  166 (1225)
                      |+||++.+.+.++     +|++  |+++|+|++|+|+||++|++|+||+||++|||+|+++..+.|. .+|..++++++|
T Consensus       279 G~Lf~l~l~~~~e-----~~s~~~lkve~lge~siassi~~L~ng~lFvGS~~gdSqLi~L~~e~d~-gsy~~ilet~~N  352 (1096)
T KOG1897|consen  279 GMLFKLLLSHTGE-----TVSGLDLKVEYLGETSIASSINYLDNGVLFVGSRFGDSQLIKLNTEPDV-GSYVVILETFVN  352 (1096)
T ss_pred             CcEEEEEeecccc-----cccceEEEEEecCCcchhhhhhcccCceEEEeccCCceeeEEccccCCC-Cchhhhhhhccc
Confidence            9999999997743     5777  9999999999999999999999999999999999999998765 789999999999


Q ss_pred             cccceeeEEeeccccCCccEEEEEecCCCccEEEEeecceeeEEEEeeCCCcceEeEeeeCCCCCCccEEEEEcCCceEE
Q psy7977         167 LAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRV  246 (1225)
Q Consensus       167 lgPI~D~~v~d~~~~~~~qLva~sG~g~~GsLrilR~GI~~~~~~s~eLpgv~~iWtl~~~~~~~~d~yLVlSf~~~T~V  246 (1225)
                      +|||+||++.|..+++|+||++|||++++||||++|+||+++++++++|||++++|++|....+++|.||++||.++|++
T Consensus       353 LgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~Gikg~w~lk~~v~~~~d~ylvlsf~~eTrv  432 (1096)
T KOG1897|consen  353 LGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPGIKGMWSLKSMVDENYDNYLVLSFISETRV  432 (1096)
T ss_pred             ccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCCccceeEeeccccccCCcEEEEEeccceEE
Confidence            99999999999998999999999999999999999999999999999999999999999888889999999999999999


Q ss_pred             EEEcCceeeeeccCCcccccCeEEEEeeCCCeEEEEccCcEEEEecCCcceeeeecCCCCCcEEEEEecCCEEEEE-ECC
Q psy7977         247 LTLSGAEVEETEMGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCA-TGC  325 (1225)
Q Consensus       247 l~i~ge~veEv~~sgF~~~~~TL~ag~l~~~~iVQVT~~~IRli~~~~~~~i~eW~~p~g~~Iv~As~n~~~VlVa-sgg  325 (1225)
                      |.+++| +||+.++||.++++||+|+++.++.++|||+++||+++.+  .++++|.+|.+++|..|++|..||+|| .++
T Consensus       433 l~i~~e-~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~--~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~  509 (1096)
T KOG1897|consen  433 LNISEE-VEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSA--GLRSEWRPPGKITIGVVSANASQVVVAGGGL  509 (1096)
T ss_pred             EEEccc-eEEeccccccccCceEEEEccCCceEEEEecccEEEEcch--hhhhcccCCCceEEEEEeecceEEEEecCcc
Confidence            999555 9999999999999999999999999999999999999987  689999999999999999999999999 679


Q ss_pred             eEEEEEeeccceeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcc
Q psy7977         326 DVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPR  405 (1225)
Q Consensus       326 ~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~  405 (1225)
                      .++|++++...|.|+.+++++.+|+||+++|+++++     .++++++||+|++-.+.+..+|++..++.+.++...+||
T Consensus       510 ~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~-----~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPR  584 (1096)
T KOG1897|consen  510 ALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAP-----NKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPR  584 (1096)
T ss_pred             EEEEEEeeccceeeeeeheecceeEEEecccCCCCC-----CcceEEEEEeecceEEEEEECCCcceeeeeccCCCccch
Confidence            999999998889999999999999999999997765     578999999998888888889999999888787789999


Q ss_pred             cEEEEeeCC-eeEEEEEECCCcEEEEEEcCCCCccccceeeeecCccceEEEEeeCCceEEEEecCCcEEEEEcCCeeEE
Q psy7977         406 SILMTCFEG-HCYLLVALGDGSMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVF  484 (1225)
Q Consensus       406 SIll~~l~~-~~~LlVGl~nG~L~~y~ld~~sg~Ls~~k~~~LG~~pV~L~~~~~~g~~~Vfa~sdrP~liyss~g~l~~  484 (1225)
                      ||++..+++ ..||+|+++||.|++|.+|..+|+++++|+++||++|+.|+.|+..+.++|||||||||++|++++++.|
T Consensus       585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~  664 (1096)
T KOG1897|consen  585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVY  664 (1096)
T ss_pred             heeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEE
Confidence            999999986 8999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecccccccccccCCCCCCCCeEEEEeCCeEEEEEEcCCCCeeeEEEeCCCcccEEEEecCCCEEEEEEEeeeccccCCC
Q psy7977         485 SNVNLRQVNHMCSLNAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADGS  564 (1225)
Q Consensus       485 ~pl~~~~v~~~s~F~se~~p~glv~vs~~~LrI~~i~~~~~l~ir~IpLg~TprrIay~p~s~~~vV~t~~~~~~~~d~~  564 (1225)
                      +|++++.+.++|||++.+||+++++++++.|+|+++++++++|+|++|++++||||+|++.+.+|+|.|.|.|.  .   
T Consensus       665 spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~--~---  739 (1096)
T KOG1897|consen  665 SPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIES--S---  739 (1096)
T ss_pred             eccchHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEeccccc--c---
Confidence            99999999999999999999999999999999999999999999999999999999999999999999833210  0   


Q ss_pred             CCCCCCcccccccccccccccccccCCCCCccccCCCCCCcccceeecceeeeccccccccccccccchhhhhcccceee
Q psy7977         565 TPVRPSASTQAQNTTSSTISSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFERNFTSSTDLNLVVAKNNRIEI  644 (1225)
Q Consensus       565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  644 (1225)
                                                                                                      
T Consensus       740 --------------------------------------------------------------------------------  739 (1096)
T KOG1897|consen  740 --------------------------------------------------------------------------------  739 (1096)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ecccCCCCCCceeeeecceeeeeeeccCCCCcccceeeeeccccccceeeccceeeeeeeCCCCCccceeEEeeeeeeee
Q psy7977         645 HTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVM  724 (1225)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~ak~~~lei~~~~~~~l~~~~~~~~~g~i~~l  724 (1225)
                                                                 +                                    
T Consensus       740 -------------------------------------------~------------------------------------  740 (1096)
T KOG1897|consen  740 -------------------------------------------A------------------------------------  740 (1096)
T ss_pred             -------------------------------------------h------------------------------------
Confidence                                                       0                                    


Q ss_pred             eeccCCCCccceeeeeeeccceeeeeeccccchhhhhhhccCCCCcccCCCCCCCceeeeCCccceeeeEeecceeeeec
Q psy7977         725 KFFRGPTDKKDLLFIITQRYNAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKIIP  804 (1225)
Q Consensus       725 ~~~r~~~s~~d~l~i~t~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vDp~~r~~~~~~~~g~~~v~~  804 (1225)
                                               +                                                      
T Consensus       741 -------------------------~------------------------------------------------------  741 (1096)
T KOG1897|consen  741 -------------------------E------------------------------------------------------  741 (1096)
T ss_pred             -------------------------h------------------------------------------------------
Confidence                                     0                                                      


Q ss_pred             cccccccccccchhhhhhhhccccccccCCCCceEEeeeccCCcceeeeeeeeccccccCCCccccccccccccccccCC
Q psy7977         805 LEKDNFELKASSIRMEELEIQDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFTKTPWKQDNIEMEASLVIPVPE  884 (1225)
Q Consensus       805 ~~~~~~~l~~~~~r~~el~~~~~~fl~~~~~p~~a~ly~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lipvp~  884 (1225)
                                                                                                      
T Consensus       742 --------------------------------------------------------------------------------  741 (1096)
T KOG1897|consen  742 --------------------------------------------------------------------------------  741 (1096)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCceeEeeeeeeeeecCCccccccccccccceeEEeeeecccccceeccccchhhhhhhhhhhhcccCccccccceeee
Q psy7977         885 PLGGAIIIGQESILYHSGKSYVAVAPQIIKSSTIVCYAKVDANGERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVEL  964 (1225)
Q Consensus       885 ~~gG~~v~g~~~~~y~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ll~~~~G~l~~l~~~~~~~~~~~~~v~~~~~~~  964 (1225)
                                                                                                      
T Consensus       742 --------------------------------------------------------------------------------  741 (1096)
T KOG1897|consen  742 --------------------------------------------------------------------------------  741 (1096)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCceecccccccCCCCCcccCCCCCCCCcceeeeEEEEEEECCCCcEEEEEECCCCCceEEEEEEEecCCCCeE
Q psy7977         965 LGEHCKGPVVEMSSLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTY 1044 (1225)
Q Consensus       965 ~~~~~~~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~~~s~irlvdp~t~~~i~~~eL~~nE~~~si~~v~~~~~~~~~ 1044 (1225)
                                                      ..+++.|.|+++++|++||++++.+||+++|.+.|+++|+|.++.+.|
T Consensus       742 --------------------------------~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~  789 (1096)
T KOG1897|consen  742 --------------------------------YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTY  789 (1096)
T ss_pred             --------------------------------hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceE
Confidence                                            001334679999999999999999999999999999999999988999


Q ss_pred             EEEEeeeeCCCCCCCcceEEEEEEEeC-CcEEEEEEEEecCceeeeccccCeEEEEeCCEEEEEEcCCCceeeeeecccc
Q psy7977        1045 FVLGTAVVHPEENEPKQGRIIIFHYDD-GKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECSHFN 1123 (1225)
Q Consensus      1045 lvVGTa~~~~eed~~~~GrI~vf~i~~-~kL~lv~~~ev~G~v~al~~f~G~LLa~vg~~l~vy~l~~~~~L~~e~~~~~ 1123 (1225)
                      ++|||+++.|+|++|..|||+||++.+ ++|+++|+++++|+|+||+.||||||||+|++||+|+|..+++|+.+|..+.
T Consensus       790 ~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~fngkllA~In~~vrLye~t~~~eLr~e~~~~~  869 (1096)
T KOG1897|consen  790 YVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEFNGKLLAGINQSVRLYEWTTERELRIECNISN  869 (1096)
T ss_pred             EEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhhCCeEEEecCcEEEEEEccccceehhhhcccC
Confidence            999999999999999999999999999 7999999999999999999999999999999999999999999998888777


Q ss_pred             eeEEEEEEEECCEEEEeeccccEEEEEEecCCCeEEEEeccCCCceeEEEEeeeCCcEEEEcCCCcEEEEEeCCCCCCcc
Q psy7977        1124 NIIALFLKVKGDFILVGDLMRSLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAATSDE 1203 (1225)
Q Consensus      1124 ~~i~~~l~~~g~~IlvGD~~kSv~~l~y~~~~~~L~~~arD~~~~wvta~~~Ld~dt~l~aD~~gNl~vl~~~~~~~~~~ 1203 (1225)
                      +.++.+|++.||+|+|||+|+|++++.|+.++++|+++|||++|+|+||+++||+|+|+|||++||+|++|+|.++++++
T Consensus       870 ~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~  949 (1096)
T KOG1897|consen  870 PIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDE  949 (1096)
T ss_pred             CeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeecccccEEEEEecCCCCchh
Confidence            77799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceeEEEEEEEEeCCceee
Q psy7977        1204 DRTHLQEVGTVHLVGDGLVQ 1223 (1225)
Q Consensus      1204 ~~~rL~~~~~fhl~Ge~i~~ 1223 (1225)
                      ++++|+..+.||+ ||.|.+
T Consensus       950 eR~~l~~~~~~hl-Gelvn~  968 (1096)
T KOG1897|consen  950 ERQILEEVGKFHL-GELVNK  968 (1096)
T ss_pred             hhhcccceeeEEe-ccceee
Confidence            9999999999999 999876

>KOG1898|consensus Back     alignment and domain information
>KOG1896|consensus Back     alignment and domain information
>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification] Back     alignment and domain information
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A Back     alignment and domain information
>KOG1897|consensus Back     alignment and domain information
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit Back     alignment and domain information
>KOG1896|consensus Back     alignment and domain information
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A Back     alignment and domain information
>KOG1898|consensus Back     alignment and domain information
>COG5161 SFT1 Pre-mRNA cleavage and polyadenylation specificity factor [RNA processing and modification] Back     alignment and domain information
>KOG0291|consensus Back     alignment and domain information
>KOG0306|consensus Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG0318|consensus Back     alignment and domain information
>KOG2048|consensus Back     alignment and domain information
>KOG2110|consensus Back     alignment and domain information
>KOG0647|consensus Back     alignment and domain information
>KOG2055|consensus Back     alignment and domain information
>KOG0283|consensus Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>KOG2321|consensus Back     alignment and domain information
>KOG0291|consensus Back     alignment and domain information
>KOG1036|consensus Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF14727 PHTB1_N: PTHB1 N-terminus Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0310|consensus Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>KOG0319|consensus Back     alignment and domain information
>KOG0650|consensus Back     alignment and domain information
>KOG1539|consensus Back     alignment and domain information
>KOG0649|consensus Back     alignment and domain information
>KOG2110|consensus Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>KOG1407|consensus Back     alignment and domain information
>KOG0306|consensus Back     alignment and domain information
>KOG1036|consensus Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>KOG1446|consensus Back     alignment and domain information
>KOG0296|consensus Back     alignment and domain information
>KOG1274|consensus Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG0299|consensus Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>PF14727 PHTB1_N: PTHB1 N-terminus Back     alignment and domain information
>KOG0296|consensus Back     alignment and domain information
>KOG2114|consensus Back     alignment and domain information
>KOG0289|consensus Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>KOG0285|consensus Back     alignment and domain information
>KOG1538|consensus Back     alignment and domain information
>KOG3881|consensus Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG0647|consensus Back     alignment and domain information
>KOG2106|consensus Back     alignment and domain information
>KOG0266|consensus Back     alignment and domain information
>KOG0294|consensus Back     alignment and domain information
>KOG2111|consensus Back     alignment and domain information
>KOG2106|consensus Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase Back     alignment and domain information
>KOG0316|consensus Back     alignment and domain information
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase Back     alignment and domain information
>KOG0282|consensus Back     alignment and domain information
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region Back     alignment and domain information
>KOG1539|consensus Back     alignment and domain information
>KOG0279|consensus Back     alignment and domain information
>KOG0305|consensus Back     alignment and domain information
>KOG0318|consensus Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>KOG0278|consensus Back     alignment and domain information
>KOG1274|consensus Back     alignment and domain information
>KOG0283|consensus Back     alignment and domain information
>KOG0277|consensus Back     alignment and domain information
>KOG0646|consensus Back     alignment and domain information
>KOG1273|consensus Back     alignment and domain information
>KOG0266|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1225
4a11_A1159 Structure Of The Hsddb1-Hscsa Complex Length = 1159 0.0
4a11_A 1159 Structure Of The Hsddb1-Hscsa Complex Length = 1159 1e-107
4a11_A 1159 Structure Of The Hsddb1-Hscsa Complex Length = 1159 1e-102
4a0b_A1159 Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Dup 0.0
4a0b_A 1159 Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Dup 1e-106
4a0b_A 1159 Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Dup 1e-102
4a08_A1159 Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Dup 0.0
4a08_A 1159 Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Dup 1e-106
4a08_A 1159 Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Dup 1e-102
4a0a_A1159 Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Dup 0.0
4a0a_A 1159 Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Dup 1e-106
4a0a_A 1159 Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Dup 1e-102
3ei1_A1158 Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Pho 0.0
3ei1_A 1158 Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Pho 1e-107
3ei1_A 1158 Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Pho 1e-102
3e0c_A1140 Crystal Structure Of Dna Damage-Binding Protein 1(D 0.0
3e0c_A 1140 Crystal Structure Of Dna Damage-Binding Protein 1(D 1e-107
3e0c_A 1140 Crystal Structure Of Dna Damage-Binding Protein 1(D 1e-102
4e54_A1150 Damaged Dna Induced Uv-Damaged Dna-Binding Protein 0.0
4e54_A 1150 Damaged Dna Induced Uv-Damaged Dna-Binding Protein 1e-107
4e54_A 1150 Damaged Dna Induced Uv-Damaged Dna-Binding Protein 1e-102
4a0l_A1144 Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp 0.0
4a0l_A 1144 Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp 1e-107
4a0l_A 1144 Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp 1e-102
2b5l_A1140 Crystal Structure Of Ddb1 In Complex With Simian Vi 0.0
2b5l_A 1140 Crystal Structure Of Ddb1 In Complex With Simian Vi 1e-107
2b5l_A 1140 Crystal Structure Of Ddb1 In Complex With Simian Vi 1e-101
3ei4_A1158 Structure Of The Hsddb1-Hsddb2 Complex Length = 115 0.0
3ei4_A 1158 Structure Of The Hsddb1-Hsddb2 Complex Length = 115 1e-107
3ei4_A 1158 Structure Of The Hsddb1-Hsddb2 Complex Length = 115 1e-101
3i7h_A1143 Crystal Structure Of Ddb1 In Complex With The H-Box 0.0
3i7h_A 1143 Crystal Structure Of Ddb1 In Complex With The H-Box 1e-107
3i7h_A 1143 Crystal Structure Of Ddb1 In Complex With The H-Box 1e-101
2b5n_A323 Crystal Structure Of The Ddb1 Bpb Domain Length = 3 1e-119
>pdb|4A11|A Chain A, Structure Of The Hsddb1-Hscsa Complex Length = 1159 Back     alignment and structure 
Iteration: 1

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/544 (63%), Positives = 409/544 (75%), Gaps = 14/544 (2%)
Query: 81  RYLLGDLAGRLFXXXXXXXXXXDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLG 140
           RYLLGD+ GRLF          DGT ++K+ +VELLGE SI ECLTYLDNGVVFVGSRLG
Sbjct: 289 RYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLG 348
Query: 141 DSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRI 200
           DSQLVKLN   +E G+YV  ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKEGSLRI
Sbjct: 349 DSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRI 408
Query: 201 IRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMG 260
           IRNGIGI EHA IDLPGIKG+W L     +  D+TLVLSFVG TRVL L+G EVEETE+ 
Sbjct: 409 IRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELM 468
Query: 261 GFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVL 320
           GF  DQQTF+CGNV  + ++Q+T ++  L+S E KA VS W+ P  K+ISV SCN +QV+
Sbjct: 469 GFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVV 528
Query: 321 CATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDI 380
            A G  +YYL++H  E++Q++H  +E+EVACLDI+PL +    S      L A+GLWTDI
Sbjct: 529 VAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSP-----LCAIGLWTDI 583
Query: 381 SARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGRLT 440
           SAR+L LPS E + KE LGGEIIPRSILMT FE   YLL ALGDG++FYF L+  +G L+
Sbjct: 584 SARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLS 643
Query: 441 DKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNA 500
           D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+MC LN+
Sbjct: 644 DRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNS 703
Query: 501 ESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQE 560
           + YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++Q+
Sbjct: 704 DGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQD 763
Query: 561 -ADGSTPVRPXXXXXXXXXXXXXXXXXXYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQ 619
            + G+T +RP                           STA     F  EVEVHNLLIIDQ
Sbjct: 764 TSGGTTALRPSASTQALSSSVSSSK--------LFSSSTAPHETSFGEEVEVHNLLIIDQ 815
Query: 620 NTFE 623
           +TFE
Sbjct: 816 HTFE 819
>pdb|4A11|A Chain A, Structure Of The Hsddb1-Hscsa Complex Length = 1159 Back     alignment and structure
>pdb|4A11|A Chain A, Structure Of The Hsddb1-Hscsa Complex Length = 1159 Back     alignment and structure
>pdb|4A0B|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex ( Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4) Length = 1159 Back     alignment and structure
>pdb|4A0B|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex ( Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4) Length = 1159 Back     alignment and structure
>pdb|4A0B|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex ( Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4) Length = 1159 Back     alignment and structure
>pdb|4A08|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex ( Purine At D-1 Position) At 3.0 A Resolution (Cpd 1) Length = 1159 Back     alignment and structure
>pdb|4A08|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex ( Purine At D-1 Position) At 3.0 A Resolution (Cpd 1) Length = 1159 Back     alignment and structure
>pdb|4A08|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex ( Purine At D-1 Position) At 3.0 A Resolution (Cpd 1) Length = 1159 Back     alignment and structure
>pdb|4A0A|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex ( Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3) Length = 1159 Back     alignment and structure
>pdb|4A0A|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex ( Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3) Length = 1159 Back     alignment and structure
>pdb|4A0A|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex ( Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3) Length = 1159 Back     alignment and structure
>pdb|3EI1|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Photoproduct Containing Dna-Duplex Length = 1158 Back     alignment and structure
>pdb|3EI1|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Photoproduct Containing Dna-Duplex Length = 1158 Back     alignment and structure
>pdb|3EI1|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4 Photoproduct Containing Dna-Duplex Length = 1158 Back     alignment and structure
>pdb|3E0C|A Chain A, Crystal Structure Of Dna Damage-Binding Protein 1(Ddb1) Length = 1140 Back     alignment and structure
>pdb|3E0C|A Chain A, Crystal Structure Of Dna Damage-Binding Protein 1(Ddb1) Length = 1140 Back     alignment and structure
>pdb|3E0C|A Chain A, Crystal Structure Of Dna Damage-Binding Protein 1(Ddb1) Length = 1140 Back     alignment and structure
>pdb|4E54|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 1150 Back     alignment and structure
>pdb|4E54|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 1150 Back     alignment and structure
>pdb|4E54|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein (Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna Repair Length = 1150 Back     alignment and structure
>pdb|4A0L|A Chain A, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 1144 Back     alignment and structure
>pdb|4A0L|A Chain A, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 1144 Back     alignment and structure
>pdb|4A0L|A Chain A, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 1144 Back     alignment and structure
>pdb|2B5L|A Chain A, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V Protein Length = 1140 Back     alignment and structure
>pdb|2B5L|A Chain A, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V Protein Length = 1140 Back     alignment and structure
>pdb|2B5L|A Chain A, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V Protein Length = 1140 Back     alignment and structure
>pdb|3EI4|A Chain A, Structure Of The Hsddb1-Hsddb2 Complex Length = 1158 Back     alignment and structure
>pdb|3EI4|A Chain A, Structure Of The Hsddb1-Hsddb2 Complex Length = 1158 Back     alignment and structure
>pdb|3EI4|A Chain A, Structure Of The Hsddb1-Hsddb2 Complex Length = 1158 Back     alignment and structure
>pdb|3I7H|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of Hbx Length = 1143 Back     alignment and structure
>pdb|3I7H|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of Hbx Length = 1143 Back     alignment and structure
>pdb|3I7H|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif Of Hbx Length = 1143 Back     alignment and structure
>pdb|2B5N|A Chain A, Crystal Structure Of The Ddb1 Bpb Domain Length = 323 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1225
3ei3_A1158 DNA damage-binding protein 1; UV-damage, DDB, nucl 1e-130
3ei3_A 1158 DNA damage-binding protein 1; UV-damage, DDB, nucl 2e-65
3ei3_A 1158 DNA damage-binding protein 1; UV-damage, DDB, nucl 7e-61
3ei3_A 1158 DNA damage-binding protein 1; UV-damage, DDB, nucl 3e-09
3ei3_A1158 DNA damage-binding protein 1; UV-damage, DDB, nucl 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... Length = 1158 Back     alignment and structure
 Score =  428 bits (1101), Expect = e-130
 Identities = 377/664 (56%), Positives = 457/664 (68%), Gaps = 47/664 (7%)

Query: 79  SERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEISIPECLTYLDNGVVFVGSR 138
             RYLLGD+ GRLFMLLLEKEE+MDGT ++K+ +VELLGE SI ECLTYLDNGVVFVGSR
Sbjct: 286 GSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSR 345

Query: 139 LGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSL 198
           LGDSQLVKLN   +E G+YV  ME+FTNL PI+DM VVDLERQGQGQLVTCSG FKEGSL
Sbjct: 346 LGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSL 405

Query: 199 RIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETE 258
           RIIRNGIGI EHA IDLPGIKG+W L     +  D+TLVLSFVG TRVL L+G EVEETE
Sbjct: 406 RIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETE 465

Query: 259 MGGFTSDQQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQ 318
           + GF  DQQTF+CGNV  + ++Q+T ++  L+S E KA VS W+ P  K+ISV SCN +Q
Sbjct: 466 LMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQ 525

Query: 319 VLCATGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWT 378
           V+ A G  +YYL++H  E++Q++H  +E+EVACLDI+PL +    S      L A+GLWT
Sbjct: 526 VVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLS-----PLCAIGLWT 580

Query: 379 DISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSLDPASGR 438
           DISAR+L LPS E + KE LGGEIIPRSILMT FE   YLL ALGDG++FYF L+  +G 
Sbjct: 581 DISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGL 640

Query: 439 LTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSL 498
           L+D+KKVTLGTQPTVL+TFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNL++VN+MC L
Sbjct: 641 LSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPL 700

Query: 499 NAESYPDSLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDI 558
           N++ YPDSLALA +ST T GTIDEIQKLHIRTVPL E+PR+I YQE SQ FGV+++RI++
Sbjct: 701 NSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEV 760

Query: 559 QEADGST-PVRPSASTQAQNTTSSTISSLSYIKPGSTKQSTANQPADFNMEVEVHNLLII 617
           Q+  G T  +RPSASTQA +++ S+    S          TA     F  EVEVHNLLII
Sbjct: 761 QDTSGGTTALRPSASTQALSSSVSSSKLFSSS--------TAPHETSFGEEVEVHNLLII 812

Query: 618 DQNTFER------------------NFTSSTDLNLVV-----------AKNNRIEIHTVT 648
           DQ+TFE                         +   +V            K  RI +   +
Sbjct: 813 DQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYS 872

Query: 649 PEGLRPVKEIFLYGKIAVMKFFRG----PTDKKDLLFIITQRTDLNLVVAKNNRIEIHTV 704
              L+ V E  + G +  M  F G      +    L+  T   +L       N I    +
Sbjct: 873 DGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYL 932

Query: 705 TPEG 708
             +G
Sbjct: 933 KTKG 936
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... Length = 1158 Back     alignment and structure
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... Length = 1158 Back     alignment and structure
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... Length = 1158 Back     alignment and structure
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... Length = 1158 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1225
3ei3_A 1158 DNA damage-binding protein 1; UV-damage, DDB, nucl 100.0
3ei3_A 1158 DNA damage-binding protein 1; UV-damage, DDB, nucl 100.0
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 98.69
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 98.47
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 98.27
2ymu_A577 WD-40 repeat protein; unknown function, two domain 98.22
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 97.85
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 97.81
1nr0_A611 Actin interacting protein 1; beta propeller, WD40 97.69
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 97.36
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 97.33
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 97.23
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 97.18
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 97.12
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 97.08
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 97.07
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 97.07
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 97.06
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 96.98
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 96.96
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 96.91
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 96.9
3mkq_A814 Coatomer beta'-subunit; beta-propeller, alpha-sole 96.9
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 96.85
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 96.83
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 96.82
2ymu_A577 WD-40 repeat protein; unknown function, two domain 96.79
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 96.79
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 96.77
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 96.73
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 96.7
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 96.68
3jrp_A379 Fusion protein of protein transport protein SEC13 96.68
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 96.68
3jrp_A379 Fusion protein of protein transport protein SEC13 96.65
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 96.64
4g56_B357 MGC81050 protein; protein arginine methyltransfera 96.64
2vdu_B450 TRNA (guanine-N(7)-)-methyltransferase- associated 96.62
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 96.61
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 96.6
3gre_A437 Serine/threonine-protein kinase VPS15; seven-blade 96.53
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 96.53
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 96.49
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 96.48
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 96.46
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 96.4
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 96.38
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 96.37
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 96.33
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 96.29
2vdu_B450 TRNA (guanine-N(7)-)-methyltransferase- associated 96.29
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 96.27
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 96.23
3gre_A437 Serine/threonine-protein kinase VPS15; seven-blade 96.2
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 96.11
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 96.06
2ynn_A304 Coatomer subunit beta'; protein transport, peptide 96.02
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 95.99
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 95.92
1nr0_A611 Actin interacting protein 1; beta propeller, WD40 95.91
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 95.8
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 95.63
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 95.6
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 95.54
2oaj_A902 Protein SNI1; WD40 repeat, beta propeller, endocyt 95.53
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 95.51
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 95.5
4g56_B357 MGC81050 protein; protein arginine methyltransfera 95.47
4e54_B435 DNA damage-binding protein 2; beta barrel, double 95.45
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 95.39
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 95.38
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 95.37
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 95.27
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 95.24
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 95.22
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 95.19
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 95.14
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 95.14
3frx_A319 Guanine nucleotide-binding protein subunit beta- l 95.05
3vu4_A355 KMHSV2; beta-propeller fold, protein transport; 2. 95.0
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 94.88
3ow8_A321 WD repeat-containing protein 61; structural genomi 94.87
3jro_A753 Fusion protein of protein transport protein SEC13 94.78
3dm0_A694 Maltose-binding periplasmic protein fused with RAC 94.76
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 94.66
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 94.66
1pby_B337 Quinohemoprotein amine dehydrogenase 40 kDa subuni 94.65
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 94.54
2xyi_A430 Probable histone-binding protein CAF1; transcripti 94.53
1nir_A543 Nitrite reductase; hemoprotein, denitrification, d 94.52
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 94.49
1vyh_C410 Platelet-activating factor acetylhydrolase IB alph 94.47
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 94.47
3jro_A753 Fusion protein of protein transport protein SEC13 94.43
3ow8_A321 WD repeat-containing protein 61; structural genomi 94.41
3dw8_B447 Serine/threonine-protein phosphatase 2A 55 kDa RE 94.39
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 94.37
3dm0_A694 Maltose-binding periplasmic protein fused with RAC 94.36
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 94.15
2pbi_B354 Guanine nucleotide-binding protein subunit beta 5; 94.1
1jmx_B349 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 94.03
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 94.01
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 94.0
2oaj_A902 Protein SNI1; WD40 repeat, beta propeller, endocyt 93.92
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 93.65
2xzm_R343 RACK1; ribosome, translation; 3.93A {Tetrahymena t 93.5
3sjl_D386 Methylamine dehydrogenase heavy chain; MAUG, C-hem 93.48
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 93.45
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 93.36
2xyi_A430 Probable histone-binding protein CAF1; transcripti 93.11
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 93.1
2xzm_R343 RACK1; ribosome, translation; 3.93A {Tetrahymena t 93.02
3dw8_B447 Serine/threonine-protein phosphatase 2A 55 kDa RE 92.84
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 92.77
3lrv_A343 PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu 92.36
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 92.33
3bg1_A316 Protein SEC13 homolog; NPC, transport, WD repeat, 92.04
3iz6_a380 40S ribosomal protein RACK1 (RACK1); eukaryotic ri 92.01
1vyh_C410 Platelet-activating factor acetylhydrolase IB alph 91.84
2oiz_A361 Aromatic amine dehydrogenase, large subunit; oxido 91.83
1nir_A543 Nitrite reductase; hemoprotein, denitrification, d 91.58
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 91.55
4e54_B435 DNA damage-binding protein 2; beta barrel, double 91.38
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 91.27
3frx_A319 Guanine nucleotide-binding protein subunit beta- l 90.87
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 90.77
2pbi_B354 Guanine nucleotide-binding protein subunit beta 5; 90.55
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 90.54
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 90.0
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 89.51
3sjl_D386 Methylamine dehydrogenase heavy chain; MAUG, C-hem 89.22
3iz6_a380 40S ribosomal protein RACK1 (RACK1); eukaryotic ri 89.04
1pby_B337 Quinohemoprotein amine dehydrogenase 40 kDa subuni 88.71
2hes_X330 YDR267CP; beta-propeller, WD40 repeat, biosyntheti 88.31
2pm7_B297 Protein transport protein SEC13, protein transport 87.86
2mad_H373 Methylamine dehydrogenase (heavy subunit); oxidore 87.86
4ggc_A318 P55CDC, cell division cycle protein 20 homolog; ce 87.66
4gq1_A393 NUP37; propeller, transport protein; 2.40A {Schizo 87.51
3vu4_A355 KMHSV2; beta-propeller fold, protein transport; 2. 87.45
2hes_X330 YDR267CP; beta-propeller, WD40 repeat, biosyntheti 87.1
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 86.59
3no2_A276 Uncharacterized protein; six-bladed beta-propeller 86.5
3c75_H426 MADH, methylamine dehydrogenase heavy chain; coppe 84.69
1qks_A567 Cytochrome CD1 nitrite reductase; enzyme, oxidored 84.02
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 83.64
1jof_A 365 Carboxy-CIS,CIS-muconate cyclase; beta-propeller, 82.93
1jmx_B349 Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 82.74
1jof_A365 Carboxy-CIS,CIS-muconate cyclase; beta-propeller, 82.2
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 82.04
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 81.16
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 80.05
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... Back     alignment and structure
Probab=100.00  E-value=3.9e-134  Score=1321.88  Aligned_cols=780  Identities=66%  Similarity=1.050  Sum_probs=700.1

Q ss_pred             cCCCCCCCceeEEeeecceEEEEEeCCcceeEEeeccCCCceeeeec------CCeEEEEEcCCCEEEEEEEeCcccCCc
Q psy7977          32 IGSPKNLDNTLVLSFVGHTRVLTLSGAEWGFHLLRGFSSLGSLWNGW------SERYLLGDLAGRLFMLLLEKEEKMDGT  105 (1225)
Q Consensus        32 ~~~P~plGG~Lv~~~vg~n~liyvDq~~~~~~~~~~l~~~~~ifv~~------~~~~LL~~e~G~Ly~l~l~~d~~~~Gr  105 (1225)
                      +|+|+|+||+||   +|+|.|+|+|+.+...+ ..|+.+ ++.+++|      +.+|||++++|+||+|+|..|++..|+
T Consensus       238 ipVP~~~gGvlv---~g~n~i~y~~~~~~~~~-~~p~~~-~~~i~~~~~~~~~~~~~LL~~~~G~l~~l~l~~d~~~~~~  312 (1158)
T 3ei3_A          238 IAVPEPFGGAII---IGQESITYHNGDKYLAI-APPIIK-QSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGT  312 (1158)
T ss_dssp             EECCTTTCCEEE---ECSSCEEEEETTEEEEE-CCGGGG-GSCEEEEEECSTTSSEEEEEETTCEEEEEEEEEEC-----
T ss_pred             EECCCCCceEEE---EECCEEEEEcCCCceEE-eccccC-CceEEEEEEEecCCCEEEEEeCCCCEEEEEEEEcCCccCc
Confidence            468999999999   99999999999886554 235544 4555665      468999999999999999998543344


Q ss_pred             eeeeecEEEEecccCcceeEEEecCCeEEEEeecCCeEEEEEeeCCCCCCCceEEEeeeeccccceeeEEeeccccCCcc
Q psy7977         106 FSVKEPKVELLGEISIPECLTYLDNGVVFVGSRLGDSQLVKLNRSPDENGTYVSVMESFTNLAPIIDMVVVDLERQGQGQ  185 (1225)
Q Consensus       106 ~~Vs~i~i~~~~tis~~SsL~~L~~g~LFvGS~~GDS~L~~i~~~~ddd~~~l~v~d~l~NlgPI~D~~v~d~~~~~~~q  185 (1225)
                      ..|++++++|||++|+|+||++|++|+||+||++|||+||||...++|++.|++++|+++|||||+||+++|..+++++|
T Consensus       313 ~~V~~l~i~~~~~~~~~ssl~~l~~g~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~~N~~PI~D~~v~d~~~~~~~~  392 (1158)
T 3ei3_A          313 VTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQ  392 (1158)
T ss_dssp             CEEEEEEEEEEEECSCCSEEEECSTTEEEEECSSSCEEEEEECSSCCTTSCCEEEEEEECCCCSEEEEEEECTTSSSCCE
T ss_pred             eeEEEEEEEEcCCccCccEEEEECCCEEEEEEecCCcEEEEEecCCCCccceEEeEeeecCcCCceeEEEEccCCCCCCe
Confidence            47999999999999999999999999999999999999999999988778899999999999999999999987788999


Q ss_pred             EEEEEecCCCccEEEEeecceeeEEEEeeCCCcceEeEeeeCCCCCCccEEEEEcCCceEEEEEcCceeeeeccCCcccc
Q psy7977         186 LVTCSGGFKEGSLRIIRNGIGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSFVGHTRVLTLSGAEVEETEMGGFTSD  265 (1225)
Q Consensus       186 Lva~sG~g~~GsLrilR~GI~~~~~~s~eLpgv~~iWtl~~~~~~~~d~yLVlSf~~~T~Vl~i~ge~veEv~~sgF~~~  265 (1225)
                      ||+|||+|++|+||++|+|++++++++++|||++++|+++....+++|+|||+||+++|+||+++++++||++++||.++
T Consensus       393 i~~~sG~g~~gsL~~lr~Gi~~~~~~~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T~Vl~i~~e~veev~~~gf~~~  472 (1158)
T 3ei3_A          393 LVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDD  472 (1158)
T ss_dssp             EEEEECCGGGCEEEEEEESBCEEEEEEECCCSCCEEEEECCCSSCSSCCEEEEEETTEEEEEEEETTEEEEECCTTCCSS
T ss_pred             EEEEECcCCCCeEEEEecCCCEEEEEeecCCCccEEEEEeecCCCCCCCEEEEECCCCeEEEEEeCCcccccccccccCC
Confidence            99999999999999999999999999999999999999998777889999999999999999999999999999999999


Q ss_pred             cCeEEEEeeCCCeEEEEccCcEEEEecCCcceeeeecCCCCCcEEEEEecCCEEEEEECCeEEEEEeeccceeEEeeecc
Q psy7977         266 QQTFYCGNVDPRTVLQVTPSAAILISTESKARVSSWEPPNGKSISVVSCNKNQVLCATGCDVYYLEVHGSEIKQLAHRAL  345 (1225)
Q Consensus       266 ~~TL~ag~l~~~~iVQVT~~~IRli~~~~~~~i~eW~~p~g~~Iv~As~n~~~VlVasgg~Lv~feid~~~L~ev~~~~l  345 (1225)
                      ++||+|++++++++||||+++||+++.+..+.+++|++|.|.+|++|++|++||+++++++++|||+++++|.++.++++
T Consensus       473 ~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~~~vvva~g~~l~~fel~~~~L~~~~~~~l  552 (1158)
T 3ei3_A          473 QQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEM  552 (1158)
T ss_dssp             SCEEEEEEETTTEEEEEESSCEEEEESSSCCEEEEECCTTCCCCCEEEECSSEEEEEETTEEEEEEEETTEEEEEEEEEC
T ss_pred             CCcEEEEEcCCCeEEEEecCEEEEEECCCCeEEEEEECCCCCEEEEEEeCCCEEEEEECCEEEEEEeeCCceeeecccCC
Confidence            99999999999999999999999999876678999999999999999999999999999999999999888999999999


Q ss_pred             CceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceEEeecCCCCCCcccEEEEeeCCeeEEEEEECCC
Q psy7977         346 EYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEVCKEPLGGEIIPRSILMTCFEGHCYLLVALGDG  425 (1225)
Q Consensus       346 ~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG  425 (1225)
                      +++|+|+++.+.++++     .++++++||+|.|++++||+|++|+.++.++|+.+++|+|++++.+++.+||+|||+||
T Consensus       553 ~~evscl~i~~~~~~~-----~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG  627 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSN-----GLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDG  627 (1158)
T ss_dssp             SSCEEEEECCCCSSST-----TCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTS
T ss_pred             CCceEEEEeecCCCCc-----ccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCC
Confidence            9999999999887665     57899999999999999999999999999999867899999999999899999999999


Q ss_pred             cEEEEEEcCCCCccccceeeeecCccceEEEEeeCCceEEEEecCCcEEEEEcCCeeEEeecccccccccccCCCCCCCC
Q psy7977         426 SMFYFSLDPASGRLTDKKKVTLGTQPTVLKTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLRQVNHMCSLNAESYPD  505 (1225)
Q Consensus       426 ~L~~y~ld~~sg~Ls~~k~~~LG~~pV~L~~~~~~g~~~Vfa~sdrP~liyss~g~l~~~pl~~~~v~~~s~F~se~~p~  505 (1225)
                      .|++|.+|..+|+|+++|+++||++|++|+++...|..+|||+|+|||++|+++++++|+|++++++.++|+|++++||+
T Consensus       628 ~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~  707 (1158)
T 3ei3_A          628 ALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPD  707 (1158)
T ss_dssp             EEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTT
T ss_pred             eEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEeccChHHhceEeccCcccCCC
Confidence            99999999999999999999999999999999888889999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCeEEEEEEcCCCCeeeEEEeCCCcccEEEEecCCCEEEEEEEeeeccccCCC-CCCCCCcccccccccccccc
Q psy7977         506 SLALATDSTFTFGTIDEIQKLHIRTVPLGEAPRRIAYQESSQTFGVITTRIDIQEADGS-TPVRPSASTQAQNTTSSTIS  584 (1225)
Q Consensus       506 glv~vs~~~LrI~~i~~~~~l~ir~IpLg~TprrIay~p~s~~~vV~t~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~  584 (1225)
                      |++++++++|||+++++.++|++|+|||++|||||+|||++++|+|+|++.+..+.++. .|.+.+++.++.+       
T Consensus       708 g~v~~~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  780 (1158)
T 3ei3_A          708 SLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALS-------  780 (1158)
T ss_dssp             EEEEECSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSE-------
T ss_pred             cEEEEcCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhh-------
Confidence            99999999999999999999999999999999999999999999999977643222110 0000000000000       


Q ss_pred             cccccCCCCCccccCCCCCCcccceeecceeeeccccccccccccccchhhhhcccceeeecccCCCCCCceeeeeccee
Q psy7977         585 SLSYIKPGSTKQSTANQPADFNMEVEVHNLLIIDQNTFERNFTSSTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKI  664 (1225)
Q Consensus       585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  664 (1225)
                                                                                                      
T Consensus       781 --------------------------------------------------------------------------------  780 (1158)
T 3ei3_A          781 --------------------------------------------------------------------------------  780 (1158)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeeeeccCCCCcccceeeeeccccccceeeccceeeeeeeCCCCCccceeEEeeeeeeeeeeccCCCCccceeeeeeecc
Q psy7977         665 AVMKFFRGPTDKKDLLFIITQRTDLNLVVAKNNRIEIHTVTPEGLRPVKEIFLYGKIAVMKFFRGPTDKKDLLFIITQRY  744 (1225)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~~~~~~lv~ak~~~lei~~~~~~~l~~~~~~~~~g~i~~l~~~r~~~s~~d~l~i~t~~~  744 (1225)
                                                                                                      
T Consensus       781 --------------------------------------------------------------------------------  780 (1158)
T 3ei3_A          781 --------------------------------------------------------------------------------  780 (1158)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeeeeeccccchhhhhhhccCCCCcccCCCCCCCceeeeCCccceeeeEeecceeeeeccccccccccccchhhhhhhh
Q psy7977         745 NAMILECRGDIDNLEILTKAHGNVSDRIGKPSENGIIAIIDPEARVIGLRLYNGLFKIIPLEKDNFELKASSIRMEELEI  824 (1225)
Q Consensus       745 ~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~vDp~~r~~~~~~~~g~~~v~~~~~~~~~l~~~~~r~~el~~  824 (1225)
                               +..         .          .                                               
T Consensus       781 ---------~~~---------~----------~-----------------------------------------------  785 (1158)
T 3ei3_A          781 ---------SSV---------S----------S-----------------------------------------------  785 (1158)
T ss_dssp             ---------EEE---------C----------C-----------------------------------------------
T ss_pred             ---------hcc---------c----------c-----------------------------------------------
Confidence                     000         0          0                                               


Q ss_pred             ccccccccCCCCceEEeeeccCCcceeeeeeeeccccccCCCccccccccccccccccCCCCCceeEeeeeeeeeecCCc
Q psy7977         825 QDVQFLHGCQNPTIICIHQDVNGRHVKTHEISLKEKEFTKTPWKQDNIEMEASLVIPVPEPLGGAIIIGQESILYHSGKS  904 (1225)
Q Consensus       825 ~~~~fl~~~~~p~~a~ly~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lipvp~~~gG~~v~g~~~~~y~~~~~  904 (1225)
                                 +                                         +.+  +                     
T Consensus       786 -----------~-----------------------------------------~~~--~---------------------  790 (1158)
T 3ei3_A          786 -----------S-----------------------------------------KLF--S---------------------  790 (1158)
T ss_dssp             -----------C-----------------------------------------CCC------------------------
T ss_pred             -----------c-----------------------------------------ccc--c---------------------
Confidence                       0                                         000  0                     


Q ss_pred             cccccccccccceeEEeeeecccccceeccccchhhhhhhhhhhhcccCccccccceeeecccccCCCceecccccccCC
Q psy7977         905 YVAVAPQIIKSSTIVCYAKVDANGERYLLGDLAGRLFMLLLEKEEKMDGTFSVKEPKVELLGEHCKGPVVEMSSLSYIKP  984 (1225)
Q Consensus       905 ~~~~~~~~~~~~~~v~~~~~d~~~~~~ll~~~~G~l~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~p  984 (1225)
                                    -.|+..                                                            
T Consensus       791 --------------~~~~~~------------------------------------------------------------  796 (1158)
T 3ei3_A          791 --------------SSTAPH------------------------------------------------------------  796 (1158)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------ccccCc------------------------------------------------------------
Confidence                          000000                                                            


Q ss_pred             CCCcccCCCCCCCCcceeeeEEEEEEECCCCcEEEEEECCCCCceEEEEEEEecCCCCeEEEEEeeeeCCCCCCCcceEE
Q psy7977         985 GSTKQSTANQPADFNMEVEVHNLLIIDQNTFEILHAHQLFPGEYALSLISSKFGEDPNTYFVLGTAVVHPEENEPKQGRI 1064 (1225)
Q Consensus       985 g~~~~~~~~~~~~~~~~~~~s~irlvdp~t~~~i~~~eL~~nE~~~si~~v~~~~~~~~~lvVGTa~~~~eed~~~~GrI 1064 (1225)
                                +..+|++.|+|||+|+||.+|+++++++|++||+++|+++|+|.+++++|+|||||++.|+|+++++|||
T Consensus       797 ----------~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri  866 (1158)
T 3ei3_A          797 ----------ETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRI  866 (1158)
T ss_dssp             -------------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEE
T ss_pred             ----------hhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEE
Confidence                      0145778899999999999999999999999999999999999888889999999999988899999999


Q ss_pred             EEEEEeCCcEEEEEEEEecCceeeeccccCeEEEEeCCEEEEEEcCCCceeeeeecccceeEEEEEEEECCEEEEeeccc
Q psy7977        1065 IIFHYDDGKLQQIAEKEIKGACYSMCEFNGKLLASINSTVRLFEWTNEKELRLECSHFNNIIALFLKVKGDFILVGDLMR 1144 (1225)
Q Consensus      1065 ~vf~i~~~kL~lv~~~ev~G~v~al~~f~G~LLa~vg~~l~vy~l~~~~~L~~e~~~~~~~i~~~l~~~g~~IlvGD~~k 1144 (1225)
                      ++|+++++||+++|+++++|+|+|||+|+||||||+|++|++|+|+++++|++++..|++++++++++.||+|+|||+|+
T Consensus       867 ~vf~v~~~kL~lv~~~~v~g~v~al~~~~g~Lla~ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~  946 (1158)
T 3ei3_A          867 VVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMR  946 (1158)
T ss_dssp             EEEEEETTEEEEEEEEEESSCEEEEEEETTEEEEEETTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSB
T ss_pred             EEEEEECCEEEEEEEEEcCCcCEEEeeeCCEEEEEcCCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhh
Confidence            99999988999999999999999999999999999999999999999999998888888766789999999999999999


Q ss_pred             cEEEEEEecCCCeEEEEeccCCCceeEEEEeeeCCcEEEEcCCCcEEEEEeCCCCCCccccceeEEEEEEEEeCCceee
Q psy7977        1145 SLTLLQYKTMEGSFEEISRDYNPNWMTSIEILDDELFLGAENSYNLFICQKDSAATSDEDRTHLQEVGTVHLVGDGLVQ 1223 (1225)
Q Consensus      1145 Sv~~l~y~~~~~~L~~~arD~~~~wvta~~~Ld~dt~l~aD~~gNl~vl~~~~~~~~~~~~~rL~~~~~fhl~Ge~i~~ 1223 (1225)
                      |++|++|++++++|+++|||+.|+|+||++|||++++++||++||||+++++|+++++++++||+++++||+ ||.++.
T Consensus       947 Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhl-G~~vt~ 1024 (1158)
T 3ei3_A          947 SVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL-GEFVNV 1024 (1158)
T ss_dssp             CEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEEC-SSCEEE
T ss_pred             eEEEEEEEcCCCeEEEEEeecccccEEEEEEEccCcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeC-CCcEee
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999 999854
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Back     alignment and structure
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Back     alignment and structure
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Back     alignment and structure
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Back     alignment and structure
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Back     alignment and structure
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Back     alignment and structure
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... Back     alignment and structure
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... Back     alignment and structure
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* Back     alignment and structure
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Back     alignment and structure
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* Back     alignment and structure
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} Back     alignment and structure
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A Back     alignment and structure
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Back     alignment and structure
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Back     alignment and structure
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 Back     alignment and structure
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* Back     alignment and structure
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1225
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 98.04
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 97.29
d1tbga_340 beta1-subunit of the signal-transducing G protein 97.25
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 97.09
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 96.95
d1tbga_340 beta1-subunit of the signal-transducing G protein 96.93
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 96.73
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 96.69
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 96.62
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 96.32
d1k8kc_ 371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 96.13
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 95.65
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 95.17
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 95.11
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 94.99
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 94.71
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 94.67
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 94.57
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 94.4
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 94.21
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 93.71
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 93.39
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 93.03
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 92.6
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 92.38
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 92.1
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 92.09
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 91.73
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 91.3
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 89.86
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 89.54
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 87.11
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 87.08
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 85.89
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 83.54
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=0.007  Score=64.83  Aligned_cols=310  Identities=13%  Similarity=0.072  Sum_probs=161.0

Q ss_pred             EEEcCCCEEEEEEEeCccc-CCceeeeecEEEEecccCcceeEEEecCC-eEEEEeecCCeEEEEEeeCCCCCCCceEEE
Q psy7977          84 LGDLAGRLFMLLLEKEEKM-DGTFSVKEPKVELLGEISIPECLTYLDNG-VVFVGSRLGDSQLVKLNRSPDENGTYVSVM  161 (1225)
Q Consensus        84 L~~e~G~Ly~l~l~~d~~~-~Gr~~Vs~i~i~~~~tis~~SsL~~L~~g-~LFvGS~~GDS~L~~i~~~~ddd~~~l~v~  161 (1225)
                      -.+.+|.+..+.+..+.-. .+.+ -+.-.+..++......|+..-.+| +|+.|+   |..+.-|.-........+...
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~H~~~V~~v~fs~~g~~latg~---dg~V~iWd~~~~~~~~~~~~~   91 (337)
T d1gxra_          16 HVTADGQMQPVPFPPDALIGPGIP-RHARQINTLNHGEVVCAVTISNPTRHVYTGG---KGCVKVWDISHPGNKSPVSQL   91 (337)
T ss_dssp             EECSSSCEEECCCCTTSSSSTTCC-SEEEEEEEECCSSCCCEEEECSSSSEEEEEC---BSEEEEEETTSTTCCSCSEEE
T ss_pred             cCCCCCCEEeeccCCcceecCCCC-CCceEEEECCCCCcEEEEEECCCCCEEEEEE---CCEEEEEEccCCcccceeEEe
Confidence            4566777777766543110 0100 011224444444455788777766 455554   445555543221111223444


Q ss_pred             eeeeccccceeeEEeeccccCCccEEEEEecCCCccEEEEeec-ceeeEEEEeeCCCcceEeEeeeCCCCCCccEEEEEc
Q psy7977         162 ESFTNLAPIIDMVVVDLERQGQGQLVTCSGGFKEGSLRIIRNG-IGIEEHACIDLPGIKGIWALSIGSPKNLDNTLVLSF  240 (1225)
Q Consensus       162 d~l~NlgPI~D~~v~d~~~~~~~qLva~sG~g~~GsLrilR~G-I~~~~~~s~eLpgv~~iWtl~~~~~~~~d~yLVlSf  240 (1225)
                      +....-++|.++++..     ..+.+++++  .+|.+++..-. -..+....+.. ....++.+....   ...+++...
T Consensus        92 ~~~~h~~~I~~v~~s~-----dg~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~---~~~~l~s~~  160 (337)
T d1gxra_          92 DCLNRDNYIRSCKLLP-----DGCTLIVGG--EASTLSIWDLAAPTPRIKAELTS-SAPACYALAISP---DSKVCFSCC  160 (337)
T ss_dssp             ECSCTTSBEEEEEECT-----TSSEEEEEE--SSSEEEEEECCCC--EEEEEEEC-SSSCEEEEEECT---TSSEEEEEE
T ss_pred             eecCCCCcEEEEEEcC-----CCCEEEEee--ccccccccccccccccccccccc-cccccccccccc---ccccccccc
Confidence            4444557898888753     223344333  46889987632 23333333321 112333333322   234555544


Q ss_pred             CCce-EEEEEcCceeeeeccCCcccccCeEEEEee-CCCeEEEEc--cCcEEEEecCCcceeeeecCCCCCcEEEEEec-
Q psy7977         241 VGHT-RVLTLSGAEVEETEMGGFTSDQQTFYCGNV-DPRTVLQVT--PSAAILISTESKARVSSWEPPNGKSISVVSCN-  315 (1225)
Q Consensus       241 ~~~T-~Vl~i~ge~veEv~~sgF~~~~~TL~ag~l-~~~~iVQVT--~~~IRli~~~~~~~i~eW~~p~g~~Iv~As~n-  315 (1225)
                      .+.+ .++.+...+..... .+..   ..+.+-.+ .++..+.+.  ...|++++...++.+..+..+  ..|.+.+.+ 
T Consensus       161 ~d~~i~~~~~~~~~~~~~~-~~~~---~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~--~~i~~l~~~~  234 (337)
T d1gxra_         161 SDGNIAVWDLHNQTLVRQF-QGHT---DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT--SQIFSLGYCP  234 (337)
T ss_dssp             TTSCEEEEETTTTEEEEEE-CCCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS--SCEEEEEECT
T ss_pred             ccccccccccccccccccc-cccc---cccccccccccccccccccccccccccccccceeecccccc--cceEEEEEcc
Confidence            4433 34433222221111 1111   11111112 222222222  345778887666666666543  357776664 


Q ss_pred             -CCEEEEE-ECCeEEEEEeeccceeEEeeeccCceeEEEEeccCCCCCCCCccccCcEEEEEEecCCeEEEEeCCCcceE
Q psy7977         316 -KNQVLCA-TGCDVYYLEVHGSEIKQLAHRALEYEVACLDISPLSNEETSSEPAKAQLAAVGLWTDISARLLSLPSLEEV  393 (1225)
Q Consensus       316 -~~~VlVa-sgg~Lv~feid~~~L~ev~~~~l~~eIScLai~~~~~~~~~~~~~~s~~laVG~w~d~tv~IlsL~~Le~v  393 (1225)
                       +.+++++ .++.+..+.+...+...  ...-...|.++++.+.           .++++.|.+ |++|++|++++.+.+
T Consensus       235 ~~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~i~~v~~s~~-----------g~~l~s~s~-Dg~i~iwd~~~~~~~  300 (337)
T d1gxra_         235 TGEWLAVGMESSNVEVLHVNKPDKYQ--LHLHESCVLSLKFAYC-----------GKWFVSTGK-DNLLNAWRTPYGASI  300 (337)
T ss_dssp             TSSEEEEEETTSCEEEEETTSSCEEE--ECCCSSCEEEEEECTT-----------SSEEEEEET-TSEEEEEETTTCCEE
T ss_pred             cccccceecccccccccccccccccc--ccccccccceEEECCC-----------CCEEEEEeC-CCeEEEEECCCCCEE
Confidence             5566666 67889888877554322  2233567888888652           457888887 999999999876665


Q ss_pred             EeecCCCCCCcccEEEEeeCCeeEEEEEECCCcEEEEEE
Q psy7977         394 CKEPLGGEIIPRSILMTCFEGHCYLLVALGDGSMFYFSL  432 (1225)
Q Consensus       394 ~~~~L~~~~~P~SIll~~l~~~~~LlVGl~nG~L~~y~l  432 (1225)
                      ....-  .....++.+.  ....+|+.|..||.+..|++
T Consensus       301 ~~~~~--~~~v~~~~~s--~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         301 FQSKE--SSSVLSCDIS--VDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEEEC--SSCEEEEEEC--TTSCEEEEEETTSCEEEEEE
T ss_pred             EEccC--CCCEEEEEEe--CCCCEEEEEeCCCeEEEEEE
Confidence            44322  1222344333  24568999999999998875
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure