Psyllid ID: psy8002

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------47
MVTKDCTGVGGACKARVNNIVKSEFDKREYRGLELQNGMKKWTNPSPNEFIATDFSLLPSDPDISPHPTILYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEYSYDAKLAGLAWDLSNTKYGMMLGISGYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFERAWSKTELLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPSQLLRFREIKIPEKSNLVYETQNAVHKSSCIEAYYQCGVQELRDNVLLELFYPIPDEHTHYQEQLGYIVVSGIRKSSGVQGLRIIVQSDKHPLFVDSRIEAFLAQMKDLISNMPDEEFQSHKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIEVAYLKSVTKENVLKFYDKRNYTESLND
cccccccccccccccEEccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEccccEEEEEEcccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEccEEcccEEEEEEcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccHHHHHHHcccccHHHHHHHHHHHHcccEEEEEEEccccHHHHHHHHHHHHHHHHHcccccccccccccccEEEEcccccccEEccccccccccEEEEEEEcccccHHHHHHHHHHccccccHHHHHHcccEEEEEEEEEcccEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHHHHHHHHcccHHHHHHHHHHHcccccccc
cccccccccccccHcccccccHHHccHHHHHHHcccccHHHcccccccccccccccccccccccccccEEEEccccEEEEEEcccccEcccEEEEEEEccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccEEEEEEEccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccccccEEEEEccccEEEEEEEcccccccEEEEEEEcccccHHHHHHHHHHHHHHHcccccHHHccEEEEcccccccccEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccHHHHHHHHHHHcccccccc
mvtkdctgvggackARVNNIvksefdkreyrGLELqngmkkwtnpspnefiatdfsllpsdpdisphptilynsplirawhkqddeyrvpklnasfefispyayldpectnMTHLFISLFKDALNEYSYDAKLAGLAWDLSNTKYGMMLGISGYSHKQSVLLSKVLDKLadfsnhidpkRYEIIKEQYYRGLknfeaeqpyqhAIYSISLCLFERAWSKTELLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKlkakpllpsqllrfreikipeksnlvyETQNAVHKSSCIEAYYQCGVQELRDNVLLelfypipdehthyqeQLGYIVVSGIrkssgvqgLRIIVqsdkhplfvDSRIEAFLAQMKDLisnmpdeefqSHKEALSAQrlekpkklsglssrFWLEITTQQYNFDRANIEVAYLKSVTkenvlkfydkrnyteslnd
mvtkdctgvggackarvnnivksefdkreyrglelqngmkkwtnpsPNEFIATDFSLLPSDPDISPHPTILYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEYSYDAKLAGLAWDLSNTKYGMMLGISGYSHKQSVLLSKVLDKLADfsnhidpkryEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFERAWSKTELLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTklkakpllpsqllRFREIKIPEKSNLVYETQNAVHKSSCIEAYYQCGVQELRDNVLLELFYPIPDEHTHYQEQLGYIVVSGIRKSSGVQGLRIIvqsdkhplfvDSRIEAFLAQMKDLISNMPDEEFQSHKEALsaqrlekpkklsglssrFWLEITTQQYNFDRANIEVAYlksvtkenvlkfydkrnyteslnd
MVTKDCTGVGGACKARVNNIVKSEFDKREYRGLELQNGMKKWTNPSPNEFIATDFSLLPSDPDISPHPTILYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEYSYDAKLAGLAWDLSNTKYGMMLGISGYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFERAWSKTELLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPSQLLRFREIKIPEKSNLVYETQNAVHKSSCIEAYYQCGVQELRDNVLLELFYPIPDEHTHYQEQLGYIVVSGIRKSSGVQGLRIIVQSDKHPLFVDSRIEAFLAQMKDLISNMPDEEFQSHKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIEVAYLKSVTKENVLKFYDKRNYTESLND
*****CTGVGGACKARVNNIVKSEFDKREYRGLELQN***KW******EFIATDFSLLP****ISPHPTILYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEYSYDAKLAGLAWDLSNTKYGMMLGISGYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFERAWSKTELLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPSQLLRFREIKIPEKSNLVYETQNAVHKSSCIEAYYQCGVQELRDNVLLELFYPIPDEHTHYQEQLGYIVVSGIRKSSGVQGLRIIVQSDKHPLFVDSRIEAFLAQMKDL******************************SSRFWLEITTQQYNFDRANIEVAYLKSVTKENVLKFYDKR********
MVTKDCTGVGGACKARVNNIVKSEFDKREYRGLELQNGMKKWTNPSPNEFIATDFSLLPSDPDISPHPTILYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEYSYDAKLAGLAWDLSNTKYGMMLGISGYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFERAWSKTELLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPSQLLRFREIKIPEKSNLVYETQNAVHKSSCIEAYYQCGVQELRDNVLLELFYPIPDEHTHYQEQLGYIVVSGIRKSSGVQGLRIIVQSDKHPLFVDSRIEAFLAQMKDLISNMPDEEFQSHKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIEVAYLKSVTKENVLKFYDKR*YT*****
********VGGACKARVNNIVKSEFDKREYRGLELQNGMKKWTNPSPNEFIATDFSLLPSDPDISPHPTILYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEYSYDAKLAGLAWDLSNTKYGMMLGISGYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFERAWSKTELLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPSQLLRFREIKIPEKSNLVYETQNAVHKSSCIEAYYQCGVQELRDNVLLELFYPIPDEHTHYQEQLGYIVVSGIRKSSGVQGLRIIVQSDKHPLFVDSRIEAFLAQMKDLISNMPDEEFQSHKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIEVAYLKSVTKENVLKFYDKRNYTESLND
****DCTGVGGACKARVNNIVKSEFDKREYRGLELQNGMKKWTNPSPNEFIATDFSLLPSDPDISPHPTILYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEYSYDAKLAGLAWDLSNTKYGMMLGISGYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFERAWSKTELLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPSQLLRFREIKIPEKSNLVYETQNAVHKSSCIEAYYQCGVQELRDNVLLELFYPIPDEHTHYQEQLGYIVVSGIRKSSGVQGLRIIVQSDKHPLFVDSRIEAFLAQMKDLISNMPDEEFQSHKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIEVAYLKSVTKENVLKFYDKRNYT*****
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MVTKDCTGVGGACKARVNNIVKSEFDKREYRGLELQNGMKKWTNPSPNEFIATDFSLLPSDPDISPHPTILYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEYSYDAKLAGLAWDLSNTKYGMMLGISGYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFERAWSKTELLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPSQLLRFREIKIPEKSNLVYETQNAVHKSSCIEAYYQCGVQELRDNVLLELFYPIPDEHTHYQEQLGYIVVSGIRKSSGVQGLRIIVQSDKHPLFVDSRIEAFLAQMKDLISNMPDEEFQSHKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIEVAYLKSVTKENVLKFYDKRNYTESLND
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query469 2.2.26 [Sep-21-2011]
P147351019 Insulin-degrading enzyme yes N/A 0.891 0.410 0.491 1e-121
Q24K021019 Insulin-degrading enzyme yes N/A 0.891 0.410 0.491 1e-120
P355591019 Insulin-degrading enzyme yes N/A 0.897 0.413 0.479 1e-119
Q9JHR71019 Insulin-degrading enzyme yes N/A 0.897 0.413 0.477 1e-118
P22817990 Insulin-degrading enzyme yes N/A 0.878 0.416 0.424 5e-97
O22941970 Zinc-metallopeptidase, pe yes N/A 0.880 0.425 0.352 2e-62
O14077969 Putative zinc protease mu yes N/A 0.816 0.395 0.357 2e-58
Q10040856 Putative zinc protease C2 no N/A 0.867 0.475 0.298 2e-44
Q060101027 A-factor-processing enzym yes N/A 0.876 0.400 0.292 2e-44
O438471150 Nardilysin OS=Homo sapien no N/A 0.865 0.353 0.283 1e-42
>sp|P14735|IDE_HUMAN Insulin-degrading enzyme OS=Homo sapiens GN=IDE PE=1 SV=4 Back     alignment and function desciption
 Score =  436 bits (1120), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 213/433 (49%), Positives = 304/433 (70%), Gaps = 15/433 (3%)

Query: 39  MKKWTN---------PSPNEFIATDFSLLPSDPDISPHPTILYNSPLIRAWHKQDDEYRV 89
           +KKW N         P+ NEFI T+F +LP + + +P+P ++ ++ + + W KQDD++ +
Sbjct: 510 IKKWQNADLNGKFKLPTKNEFIPTNFEILPLEKEATPYPALIKDTAMSKLWFKQDDKFFL 569

Query: 90  PKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEYSYDAKLAGLAWDLSNTKYGMML 149
           PK   +FEF SP+AY+DP   NM +L++ L KD+LNEY+Y A+LAGL++DL NT YGM L
Sbjct: 570 PKACLNFEFFSPFAYVDPLHCNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYL 629

Query: 150 GISGYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSIS 209
            + GY+ KQ +LL K+++K+A F   ID KR+EIIKE Y R L NF AEQP+QHA+Y + 
Sbjct: 630 SVKGYNDKQPILLKKIIEKMATFE--IDEKRFEIIKEAYMRSLNNFRAEQPHQHAMYYLR 687

Query: 210 LCLFERAWSKTELLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEE 269
           L + E AW+K EL E+LD +T  +L  F   LLS++ IEAL+HGN  KQ  L I++M+E+
Sbjct: 688 LLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVED 747

Query: 270 KLQTKLKAKPLLPSQLLRFREIKIPEKSNLVYETQNAVHKSSCIEAYYQCGVQELRDNVL 329
            L      KPLLPSQL+R+RE+++P++   VY+ +N VH +  IE YYQ  +Q   +N+ 
Sbjct: 748 TLIEHAHTKPLLPSQLVRYREVQLPDRGWFVYQQRNEVHNNCGIEIYYQTDMQSTSENMF 807

Query: 330 LELFYPIPDEHT----HYQEQLGYIVVSGIRKSSGVQGLRIIVQSDKHPLFVDSRIEAFL 385
           LELF  I  E        +EQLGYIV SG R+++G+QGLR I+QS+K P +++SR+EAFL
Sbjct: 808 LELFCQIISEPCFNTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSEKPPHYLESRVEAFL 867

Query: 386 AQMKDLISNMPDEEFQSHKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIEVAY 445
             M+  I +M +E FQ H +AL+ +RL+KPKKLS   +++W EI +QQYNFDR N EVAY
Sbjct: 868 ITMEKSIEDMTEEAFQKHIQALAIRRLDKPKKLSAECAKYWGEIISQQYNFDRDNTEVAY 927

Query: 446 LKSVTKENVLKFY 458
           LK++TKE+++KFY
Sbjct: 928 LKTLTKEDIIKFY 940
Plays a role in the cellular breakdown of insulin, IAPP, glucagon, bradykinin, kallidin and other peptides, and thereby plays a role in intercellular peptide signaling. Degrades amyloid formed by APP and IAPP. May play a role in the degradation and clearance of naturally secreted amyloid beta-protein by neurons and microglia.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: 5EC: 6
>sp|Q24K02|IDE_BOVIN Insulin-degrading enzyme OS=Bos taurus GN=IDE PE=2 SV=1 Back     alignment and function description
>sp|P35559|IDE_RAT Insulin-degrading enzyme OS=Rattus norvegicus GN=Ide PE=1 SV=1 Back     alignment and function description
>sp|Q9JHR7|IDE_MOUSE Insulin-degrading enzyme OS=Mus musculus GN=Ide PE=1 SV=1 Back     alignment and function description
>sp|P22817|IDE_DROME Insulin-degrading enzyme OS=Drosophila melanogaster GN=Ide PE=1 SV=4 Back     alignment and function description
>sp|O22941|PXM16_ARATH Zinc-metallopeptidase, peroxisomal OS=Arabidopsis thaliana GN=PXM16 PE=2 SV=1 Back     alignment and function description
>sp|O14077|MU138_SCHPO Putative zinc protease mug138 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug138 PE=1 SV=1 Back     alignment and function description
>sp|Q10040|YQA4_CAEEL Putative zinc protease C28F5.4 OS=Caenorhabditis elegans GN=C28F5.4 PE=3 SV=2 Back     alignment and function description
>sp|Q06010|STE23_YEAST A-factor-processing enzyme OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STE23 PE=1 SV=2 Back     alignment and function description
>sp|O43847|NRDC_HUMAN Nardilysin OS=Homo sapiens GN=NRD1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query469
91077850 977 PREDICTED: similar to metalloprotease [T 0.878 0.421 0.562 1e-134
345496783 1016 PREDICTED: insulin-degrading enzyme-like 0.906 0.418 0.506 1e-123
345496781 1020 PREDICTED: insulin-degrading enzyme-like 0.906 0.416 0.506 1e-123
225733943 990 Chain A, Crystal Structure Of Human Insu 0.891 0.422 0.498 1e-122
374074174 990 Chain A, The Structure Of Cysteine-Free 0.891 0.422 0.498 1e-122
270346544 969 Chain A, Crystal Structure Of Human Insu 0.891 0.431 0.498 1e-122
237823798 1019 Chain A, Human Ide-Inhibitor Complex At 0.891 0.410 0.498 1e-122
256032525 990 Chain A, Crystal Structure Of Human Insu 0.891 0.422 0.496 1e-121
297687018 1019 PREDICTED: insulin-degrading enzyme [Pon 0.891 0.410 0.494 1e-120
62087988 594 insulysin variant [Homo sapiens] 0.891 0.703 0.491 1e-120
>gi|91077850|ref|XP_971897.1| PREDICTED: similar to metalloprotease [Tribolium castaneum] gi|270001475|gb|EEZ97922.1| hypothetical protein TcasGA2_TC000308 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 235/418 (56%), Positives = 306/418 (73%), Gaps = 6/418 (1%)

Query: 45  PSPNEFIATDFSLLPSDPDISPHPTILYNSPLIRAWHKQDDEYRVPKLNASFEFISPYAY 104
           P  NEFI TDF L P D +++ HP I+ ++ L R W KQD+ + +PK N  F+F+SP AY
Sbjct: 486 PEKNEFIPTDFELYPIDKEVTEHPVIIQDTALTRVWFKQDETFLLPKANVMFDFVSPLAY 545

Query: 105 LDPECTNMTHLFISLFKDALNEYSYDAKLAGLAWDLSNTKYGMMLGISGYSHKQSVLLSK 164
           LDP   N+TH+ + LF+DALNEY+Y A+LAGL W+L NTKYG++L I GYS+KQ + L K
Sbjct: 546 LDPLNCNLTHMLVQLFRDALNEYAYAAELAGLKWELINTKYGLILAIGGYSNKQHIFLDK 605

Query: 165 VLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFERAWSKTELLE 224
           V++KL +F   IDPKR+EI KE Y R LKNF AEQPYQHA+Y ++  L E +W+K ELL 
Sbjct: 606 VMEKLTNFK--IDPKRFEICKENYIRNLKNFAAEQPYQHAVYYLAALLTEHSWTKQELLA 663

Query: 225 SLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPSQ 284
           + + +T +KL  F   +LSKM IE LIHGNANK+  L +V+++E++L + L   PLLP Q
Sbjct: 664 TTEQLTIDKLEAFIPQILSKMHIECLIHGNANKEKALQLVQIVEDRLLSTLNMSPLLPRQ 723

Query: 285 LLRFREIKIPEKSNLVYETQNAVHKSSCIEAYYQCGVQELRDNVLLELFYPIPDEHT--- 341
           LL  RE+K+ +  N VYE QN VHK SCIE YYQCG+Q   +N+ LELF  I  E     
Sbjct: 724 LLLNRELKLEDGCNYVYEVQNEVHKESCIELYYQCGLQSKENNMKLELFAQIVQEPCFDI 783

Query: 342 -HYQEQLGYIVVSGIRKSSGVQGLRIIVQSDKHPLFVDSRIEAFLAQMKDLISNMPDEEF 400
              +EQLGYIV SGIR+S+GVQGLRIIVQSDKHP+ +D RIE FL  M   + NM +EEF
Sbjct: 784 LRTKEQLGYIVFSGIRRSNGVQGLRIIVQSDKHPVRLDERIEEFLKNMLSYLKNMSEEEF 843

Query: 401 QSHKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIEVAYLKSVTKENVLKFY 458
             H+EAL+AQRLEKPK+LS  ++ FW EIT+QQY+FDRAN+EVAYL+++TKE+++ FY
Sbjct: 844 ARHREALAAQRLEKPKQLSTQTNIFWGEITSQQYHFDRANVEVAYLRTLTKEDIIDFY 901

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|345496783|ref|XP_003427813.1| PREDICTED: insulin-degrading enzyme-like isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|345496781|ref|XP_001603463.2| PREDICTED: insulin-degrading enzyme-like isoform 1 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|225733943|pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Insulin gi|225733944|pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Insulin gi|225733949|pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In Complex With Iodinated Insulin gi|225733950|pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In Complex With Iodinated Insulin gi|294662364|pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex With Macrophage Inflammatory Protein 1 Alpha gi|294662365|pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex With Macrophage Inflammatory Protein 1 Alpha gi|306440712|pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Ubiquitin gi|306440713|pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Ubiquitin gi|312207906|pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide) In Complex With Human B-Type Natriuretic Peptide (Bnp) gi|312207907|pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide) In Complex With Human B-Type Natriuretic Peptide (Bnp) gi|312207910|pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide) In Complex With Human Atrial Natriuretic Peptide (Anp) gi|312207911|pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide) In Complex With Human Atrial Natriuretic Peptide (Anp) gi|428697906|pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With Inhibitor Compound 41367 gi|428697907|pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With Inhibitor Compound 41367 Back     alignment and taxonomy information
>gi|374074174|pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading Enzyme gi|374074175|pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading Enzyme gi|453055745|pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide) In Complex With Compund 41367 gi|453055746|pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide) In Complex With Compund 41367 Back     alignment and taxonomy information
>gi|270346544|pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Amylin gi|270346545|pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Amylin Back     alignment and taxonomy information
>gi|237823798|pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution gi|237823799|pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution gi|268612510|pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Amyloid-Beta (1-42) gi|268612511|pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Amyloid-Beta (1-42) Back     alignment and taxonomy information
>gi|256032525|pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In Complex With Insulin-Like Growth Factor Ii gi|256032526|pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In Complex With Insulin-Like Growth Factor Ii Back     alignment and taxonomy information
>gi|297687018|ref|XP_002821024.1| PREDICTED: insulin-degrading enzyme [Pongo abelii] Back     alignment and taxonomy information
>gi|62087988|dbj|BAD92441.1| insulysin variant [Homo sapiens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query469
UNIPROTKB|F1SC98990 IDE "Uncharacterized protein" 0.908 0.430 0.491 1.5e-119
UNIPROTKB|P147351019 IDE "Insulin-degrading enzyme" 0.908 0.418 0.491 3.2e-119
UNIPROTKB|Q24K021019 IDE "Insulin-degrading enzyme" 0.908 0.418 0.491 1.1e-118
RGD|28611019 Ide "insulin degrading enzyme" 0.908 0.418 0.485 1.2e-117
ZFIN|ZDB-GENE-070410-85998 ide "insulin-degrading enzyme" 0.891 0.418 0.497 4.2e-117
MGI|MGI:964121019 Ide "insulin degrading enzyme" 0.912 0.420 0.480 6.8e-117
UNIPROTKB|E2RGZ31019 IDE "Uncharacterized protein" 0.891 0.410 0.490 8.6e-117
FB|FBgn0001247990 Ide "Insulin degrading metallo 0.878 0.416 0.424 6.8e-98
UNIPROTKB|F1P6U4902 IDE "Uncharacterized protein" 0.656 0.341 0.509 2.1e-88
UNIPROTKB|J9NYF5400 IDE "Uncharacterized protein" 0.675 0.792 0.507 5e-83
UNIPROTKB|F1SC98 IDE "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
 Score = 1107 (394.7 bits), Expect = 1.5e-119, Sum P(2) = 1.5e-119
 Identities = 214/435 (49%), Positives = 312/435 (71%)

Query:    28 REYRGLELQNGMKKWTNPSPNEFIATDFSLLPSDPDISPHPTILYNSPLIRAWHKQDDEY 87
             ++++  +L NG  K+  P+ NEFI T+F +L  + + +P+P+++ ++ + + W KQDD++
Sbjct:   482 KKWQNADL-NG--KFKLPTKNEFIPTNFEILSLEKEATPYPSLIKDTAMSKLWFKQDDKF 538

Query:    88 RVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEYSYDAKLAGLAWDLSNTKYGM 147
              +PK   +FEF SP+AY+DP   NM +L++ L KD+LNEY+Y A+LAGL++DL NT YGM
Sbjct:   539 FLPKACLNFEFFSPFAYVDPLHCNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGM 598

Query:   148 MLGISGYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYS 207
              L + GY+ KQ +LL K+++K+A F   ID KR+EIIKE Y R L NF AEQP+QHA+Y 
Sbjct:   599 YLSVKGYNDKQPILLKKIIEKMATFE--IDEKRFEIIKEAYMRSLNNFRAEQPHQHAMYY 656

Query:   208 ISLCLFERAWSKTELLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKML 267
             + L + E AW+K EL E+LD +T  +L  F   LLS++ IEAL+HGN  KQ  L I++M+
Sbjct:   657 LRLLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMV 716

Query:   268 EEKLQTKLKAKPLLPSQLLRFREIKIPEKSNLVYETQNAVHKSSCIEAYYQCGVQELRDN 327
             E+ L      KPLLPSQL+R+RE+++P++   VY+ +N VH +  IE YYQ  +Q   +N
Sbjct:   717 EDTLIEHAHTKPLLPSQLVRYREVQLPDRGWFVYQQRNEVHNNCGIEIYYQTDMQSTSEN 776

Query:   328 VLLELFYPIPDE---HT-HYQEQLGYIVVSGIRKSSGVQGLRIIVQSDKHPLFVDSRIEA 383
             + LELF  I  E   +T   +EQLGYIV SG R+++G+QGLR I+QS+K P +++SR+EA
Sbjct:   777 MFLELFCQIISEPCFNTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSEKPPHYLESRVEA 836

Query:   384 FLAQMKDLISNMPDEEFQSHKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIEV 443
             FL  M+  I +M +E FQ H +AL+ +RL+KPKKLS   +++W EI +QQYNFDR NIEV
Sbjct:   837 FLVTMEKSIEDMAEEAFQKHIQALAIRRLDKPKKLSAECAKYWGEIISQQYNFDRDNIEV 896

Query:   444 AYLKSVTKENVLKFY 458
             AYLK++TKE+++KFY
Sbjct:   897 AYLKTLTKEDIIKFY 911
GO:1901143 "insulin catabolic process" evidence=IEA
GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IEA
GO:0051260 "protein homooligomerization" evidence=IEA
GO:0050435 "beta-amyloid metabolic process" evidence=IEA
GO:0043559 "insulin binding" evidence=IEA
GO:0043130 "ubiquitin binding" evidence=IEA
GO:0042803 "protein homodimerization activity" evidence=IEA
GO:0032461 "positive regulation of protein oligomerization" evidence=IEA
GO:0010992 "ubiquitin homeostasis" evidence=IEA
GO:0010815 "bradykinin catabolic process" evidence=IEA
GO:0009986 "cell surface" evidence=IEA
GO:0008340 "determination of adult lifespan" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0005829 "cytosol" evidence=IEA
GO:0005777 "peroxisome" evidence=IEA
GO:0005739 "mitochondrion" evidence=IEA
GO:0005634 "nucleus" evidence=IEA
GO:0005615 "extracellular space" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005102 "receptor binding" evidence=IEA
GO:0004222 "metalloendopeptidase activity" evidence=IEA
GO:0001948 "glycoprotein binding" evidence=IEA
UNIPROTKB|P14735 IDE "Insulin-degrading enzyme" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q24K02 IDE "Insulin-degrading enzyme" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|2861 Ide "insulin degrading enzyme" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070410-85 ide "insulin-degrading enzyme" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:96412 Ide "insulin degrading enzyme" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RGZ3 IDE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0001247 Ide "Insulin degrading metalloproteinase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1P6U4 IDE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NYF5 IDE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query469
COG1025937 COG1025, Ptr, Secreted/periplasmic Zn-dependent pe 3e-67
PRK15101961 PRK15101, PRK15101, protease3; Provisional 7e-27
pfam05193182 pfam05193, Peptidase_M16_C, Peptidase M16 inactive 9e-07
>gnl|CDD|223956 COG1025, Ptr, Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
 Score =  231 bits (591), Expect = 3e-67
 Identities = 123/424 (29%), Positives = 206/424 (48%), Gaps = 18/424 (4%)

Query: 42  WTNPSPNEFIATDFSLLPSDPDISPHPTILYNSPLIRAWHKQDDEYRV-PKLNASFEFIS 100
            + P PN FI  D SL+ S+      P +L   P +R W+ ++D + V PK + S    S
Sbjct: 477 LSLPEPNPFIPDDVSLIKSEKKF-TFPQLLSEDPNLRLWYLKEDYFAVEPKASVSLAIRS 535

Query: 101 PYAYLDPECTNMTHLFISLFKDALNEYSYDAKLAGLAWDLSNTKYGMMLGISGYSHKQSV 160
           P+A   P    +T L+  L  DAL++ SY A LAGL++ L+    G+ L ISG++ +   
Sbjct: 536 PHASRSPRNQVLTELYAYLANDALDKLSYQASLAGLSFSLAANSNGLDLTISGFTQRLPQ 595

Query: 161 LLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFERAWSKT 220
           LL   LD L      +D  R+E  K Q    LKN    +PY+ A+  ++  L    WS+ 
Sbjct: 596 LLRAFLDGLFSLP--VDEDRFEQAKSQLSEELKNALTGKPYRQALDGLTGLLQVPYWSRE 653

Query: 221 ELLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTKLKAKPL 280
           E   +L+ ++ E+   F   LL+ + +E L+ GN  +    ++ + L++KL       P 
Sbjct: 654 ERRNALESVSVEEFAAFRDTLLNGVHLEMLVLGNLTEADATNLAETLQKKL-------PA 706

Query: 281 LPSQLLRFREIKIPEKSNLVYETQNAVHKSSCIEAYYQCGVQELRDNVLLELFYPIPDEH 340
           + S   R   + + +    ++ET      S+     Y     E++ + L  L   +    
Sbjct: 707 IGSTWYRNPSVYLLKGGTRIFETVGGESDSANAAILYPQQYDEIKSSALSSLLGQLI-HP 765

Query: 341 THY-----QEQLGYIVVSGIRKSSGVQGLRIIVQSDKH-PLFVDSRIEAFLAQMKDLISN 394
             +     +EQLGY V SG R+     G+  +VQS+   P ++  RI AFL   +  +  
Sbjct: 766 WFFDQLRTKEQLGYAVFSGPREVGRTPGIGFLVQSNSKSPSYLLERINAFLETAEPELRE 825

Query: 395 MPDEEFQSHKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIEVAYLKSVTKENV 454
           M +E+F+  K+AL  Q L+ P+ L+  +SR W        +FD    ++  +K++TK+ +
Sbjct: 826 MSEEDFEQIKKALINQILQPPQNLAEEASRLWKAFGRGNLDFDHREKKIEAVKTLTKQKL 885

Query: 455 LKFY 458
           L F+
Sbjct: 886 LDFF 889

Length = 937
>gnl|CDD|185056 PRK15101, PRK15101, protease3; Provisional Back     alignment and domain information
>gnl|CDD|218490 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 469
KOG0959|consensus974 100.0
COG1025937 Ptr Secreted/periplasmic Zn-dependent peptidases, 100.0
PRK15101961 protease3; Provisional 100.0
COG0612438 PqqL Predicted Zn-dependent peptidases [General fu 99.96
PRK15101 961 protease3; Provisional 99.89
TIGR02110 696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 99.89
KOG0960|consensus467 99.85
KOG2067|consensus472 99.8
PTZ00432 1119 falcilysin; Provisional 99.76
PF05193184 Peptidase_M16_C: Peptidase M16 inactive domain; In 99.65
COG1026 978 Predicted Zn-dependent peptidases, insulinase-like 99.28
COG1025 937 Ptr Secreted/periplasmic Zn-dependent peptidases, 99.23
PTZ004321119 falcilysin; Provisional 99.19
COG1026978 Predicted Zn-dependent peptidases, insulinase-like 99.17
KOG2583|consensus429 99.07
KOG0961|consensus 1022 98.97
TIGR02110696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 98.86
KOG0959|consensus 974 98.8
PF00675149 Peptidase_M16: Insulinase (Peptidase family M16) T 98.76
KOG2019|consensus 998 98.73
KOG0961|consensus1022 98.59
KOG2019|consensus998 98.08
KOG2067|consensus472 96.91
KOG0960|consensus467 96.64
COG0612438 PqqL Predicted Zn-dependent peptidases [General fu 95.83
PF08367248 M16C_assoc: Peptidase M16C associated; InterPro: I 95.58
PF05193184 Peptidase_M16_C: Peptidase M16 inactive domain; In 91.81
>KOG0959|consensus Back     alignment and domain information 
Probab=100.00  E-value=6.2e-73  Score=580.24  Aligned_cols=449  Identities=41%  Similarity=0.678  Sum_probs=425.1

Q ss_pred             cccccccccccccccccH-HHHHhhcCC---------CCCCCCCCCCCccCCCCCCCCCCCeEEecCCCeeeeeecCCcc
Q psy8002          18 NNIVKSEFDKREYRGLEL-QNGMKKWTN---------PSPNEFIATDFSLLPSDPDISPHPTILYNSPLIRAWHKQDDEY   87 (469)
Q Consensus        18 ~~~~~~~~y~~~Y~~~~i-~~~~~~~~~---------P~~N~fip~~f~~~~~~~~~~~~P~~i~~~~~~~lw~~~d~~f   87 (469)
                      .....|+||||.|.+++| +++++.|.+         |.||.|||+||++++.+.+..++|++|.+++..+|||++|+.|
T Consensus       450 ~~d~~E~~ygt~y~~e~i~~~~~~~~~~~~~~~~l~lP~~nefI~t~f~~~~~~~~~~~~P~Li~~~~~~~lw~k~dd~f  529 (974)
T KOG0959|consen  450 KTDKAEPWYGTAYKVEDIPAEIIKEWENSHLNPELHLPTPNEFIPTDFSILPAPIPKLEYPVLISDTPFSELWYKQDDKF  529 (974)
T ss_pred             ccccccceeccccccccCCHHHHHHhhccCccccccCCCCCcccccccccccccCccccCCeeeecCCcceeEEeccccc
Confidence            356689999999999999 999999954         9999999999999988767788999999999999999999999


Q ss_pred             cccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcccccCceEEEeeeCcceEEEEeecCccHHHHHHHHHH
Q psy8002          88 RVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEYSYDAKLAGLAWDLSNTKYGMMLGISGYSHKQSVLLSKVLD  167 (469)
Q Consensus        88 ~~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~e~~y~a~~ag~~~~~~~~~~g~~i~~~G~s~~l~~ll~~i~~  167 (469)
                      ++||+.+.+.+.+|.+..+|.+++++.+|..++.+.++|..|+|..||++++++.+..|+.++|+||+++++.+++.+++
T Consensus       530 ~~Pka~~~~~~~~p~~~~~~~~~~l~~l~~~~l~d~l~E~~Y~A~~aGl~~~~~~s~~G~~~~v~Gfnekl~~ll~~~~~  609 (974)
T KOG0959|consen  530 NVPKAYTKFDFICPGATQSPLNSVLSTLYVRLLKDQLNEYLYPALLAGLTYSLSSSSKGVELRVSGFNEKLPLLLEKVVQ  609 (974)
T ss_pred             ccchhheeeeecCcccccCHHHHHHHHHHHHHHHHHHhHHHHHHHhccceEEeeecCCceEEEEeccCcccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHccCCCCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhccCCCCCHHHHHHHccCCCHHHHHHHHHHHHHhHhh
Q psy8002         168 KLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFERAWSKTELLESLDGITREKLVEFSHDLLSKMFI  247 (469)
Q Consensus       168 ~l~~~~~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~~~~~~~~~~~~l~~it~edl~~f~~~~~~~~~~  247 (469)
                      .|.++  .+++++|+.+|+.+.++++|...++|+.+|.+.+..++.+..|+.++++++++.++++|+..|...++++.++
T Consensus       610 ~~~~f--~~~~~rf~iike~~~~~~~n~~~~~p~~~a~~~~~lll~~~~W~~~e~~~al~~~~le~~~~F~~~~~~~~~~  687 (974)
T KOG0959|consen  610 MMANF--ELDEDRFEIIKELLKRELRNHAFDNPYQLANDYLLLLLEESIWSKEELLEALDDVTLEDLESFISEFLQPFHL  687 (974)
T ss_pred             HHHhc--cccHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhccccchHHHHHHhhcccHHHHHHHHHHHhhhhhe
Confidence            99999  9999999999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             heeeecCCChHHHHHHHHHHHHHHhcc-ccCCCCCcccccccceeecCCCCceEEecc-CCCCCCeEEEEEEecCCcChH
Q psy8002         248 EALIHGNANKQVGLSIVKMLEEKLQTK-LKAKPLLPSQLLRFREIKIPEKSNLVYETQ-NAVHKSSCIEAYYQCGVQELR  325 (469)
Q Consensus       248 ~~lv~Gn~~~~~a~~l~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~ns~v~~~~q~~~~~~~  325 (469)
                      +++|+||+++++|.++++.+.+.+... +..+|..+.+..+.+.+.+|.|..+++... ++.++|+++++|||++..+.+
T Consensus       688 e~~i~GN~te~~A~~l~~~v~d~l~~~~~~~~p~~~~~~~~~~~~~lp~G~~~~~~~~~n~~~~ns~i~~~~Q~~~~~~~  767 (974)
T KOG0959|consen  688 ELLIHGNLTEKEALQLLKSVLDILKSAAPNSRPLFRSEHLPRREIQLPNGDYYFYRHLLNKTDDNSCIEVYYQIGVQDTR  767 (974)
T ss_pred             EEEEecCcchHHHHHHHHHHHhhhhccCCCCccccccccCcccceeccCCceEEEEcccccCCCCceEEEEEEcccchhH
Confidence            999999999999999999999888332 234455555556778899999999887755 788899999999999999999


Q ss_pred             hHHHHHHHhhccCCCcc----cccccCcEEEeeeeecCCeeeEEEEEecCCChhHHHHHHHHHHHHHHHHHcCCCHHHHH
Q psy8002         326 DNVLLELFYPIPDEHTH----YQEQLGYIVVSGIRKSSGVQGLRIIVQSDKHPLFVDSRIEAFLAQMKDLISNMPDEEFQ  401 (469)
Q Consensus       326 ~~~~~~ll~~il~~~~f----tk~qLgY~V~s~~~~~~~~~~~~~~vqs~~~~~~l~~~I~~fl~~~~~~l~~~seeef~  401 (469)
                      +.+.+.|+.+++++|+|    |++||||+|+++.+...|+.|+.+.|||+.++++++.||+.|++.+.+.+..|++++|+
T Consensus       768 ~~~~~~L~~~li~ep~Fd~LRTkeqLGYiv~~~~r~~~G~~~~~i~Vqs~~~~~~le~rIe~fl~~~~~~i~~m~~e~Fe  847 (974)
T KOG0959|consen  768 DNAVLGLLEQLIKEPAFDQLRTKEQLGYIVSTGVRLNYGTVGLQITVQSEKSVDYLEERIESFLETFLEEIVEMSDEEFE  847 (974)
T ss_pred             HHHHHHHHHHHhccchHHhhhhHHhhCeEeeeeeeeecCcceeEEEEccCCCchHHHHHHHHHHHHHHHHHHhcchhhhh
Confidence            99999999999999999    99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCChhhHHHHhHHhhhccccccccchHHHHHHhcCCHHHHHHHHHhhcCCCCCC
Q psy8002         402 SHKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIEVAYLKSVTKENVLKFYDKRNYTESLN  468 (469)
Q Consensus       402 ~~k~~l~~~l~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~~~~l~~lT~edv~~~~~~~~~~~s~~  468 (469)
                      ..+.+++..+.++++++..++.++|.+|..+.|+|++.++.++++++||++|+..|+.+++...+++
T Consensus       848 ~~~~~lI~~~~ek~~~l~~e~~~~w~ei~~~~y~f~r~~~~v~~l~~i~k~~~i~~f~~~~~~~a~~  914 (974)
T KOG0959|consen  848 KHKSGLIASKLEKPKNLSEESSRYWDEIIIGQYNFDRDEKEVEALKKITKEDVINFFDEYIRKGAAK  914 (974)
T ss_pred             hhHHHHHHHHhhcCcchhHHHHHHHHHHHhhhhcchhhHHHHHHHHhhhHHHHHHHHHhhccccchh
Confidence            9999999999999999999999999999999999999999999999999999999999999877653

>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>KOG0960|consensus Back     alignment and domain information
>KOG2067|consensus Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>KOG2583|consensus Back     alignment and domain information
>KOG0961|consensus Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>KOG0959|consensus Back     alignment and domain information
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification Back     alignment and domain information
>KOG2019|consensus Back     alignment and domain information
>KOG0961|consensus Back     alignment and domain information
>KOG2019|consensus Back     alignment and domain information
>KOG2067|consensus Back     alignment and domain information
>KOG0960|consensus Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query469
2wby_A990 Crystal Structure Of Human Insulin-Degrading Enzyme 1e-125
3qz2_A990 The Structure Of Cysteine-Free Human Insulin Degrad 1e-125
3hgz_A969 Crystal Structure Of Human Insulin-Degrading Enzyme 1e-125
3e4a_A1019 Human Ide-Inhibitor Complex At 2.6 Angstrom Resolut 1e-125
3e4z_A990 Crystal Structure Of Human Insulin Degrading Enzyme 1e-124
2g47_A990 Crystal Structure Of Human Insulin-Degrading Enzyme 1e-122
2jg4_A990 Substrate-Free Ide Structure In Its Closed Conforma 1e-122
3cww_A990 Crystal Structure Of Ide-Bradykinin Complex Length 1e-121
3p7o_A1019 Rat Insulin Degrading Enzyme (Insulysin) E111f Muta 1e-120
3p7l_A978 Rat Insulin Degrading Enzyme (Insulysin) Length = 9 1e-120
3tuv_A1019 Crystal Structure Of Insulysin With Bound Atp Lengt 1e-120
1q2l_A939 Crystal Structure Of Pitrilysin Length = 939 8e-17
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Insulin Length = 990 Back     alignment and structure 
Iteration: 1

 Score =  445 bits (1145), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/433 (49%), Positives = 308/433 (71%), Gaps = 15/433 (3%)
Query: 39  MKKWTN---------PSPNEFIATDFSLLPSDPDISPHPTILYNSPLIRAWHKQDDEYRV 89
           +KKW N         P+ NEFI T+F +LP + + +P+P ++ ++ + + W KQDD++ +
Sbjct: 481 IKKWQNADLNGKFKLPTKNEFIPTNFEILPLEKEATPYPALIKDTAMSKLWFKQDDKFFL 540
Query: 90  PKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEYSYDAKLAGLAWDLSNTKYGMML 149
           PK N +FEF SP+AY+DP  +NM +L++ L KD+LNEY+Y A+LAGL++DL NT YGM L
Sbjct: 541 PKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQNTIYGMYL 600
Query: 150 GISGYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSIS 209
            + GY+ KQ +LL K+++K+A F   ID KR+EIIKE Y R L NF AEQP+QHA+Y + 
Sbjct: 601 SVKGYNDKQPILLKKIIEKMATFE--IDEKRFEIIKEAYMRSLNNFRAEQPHQHAMYYLR 658
Query: 210 LCLFERAWSKTELLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEE 269
           L + E AW+K EL E+LD +T  +L  F   LLS++ IEAL+HGN  KQ  L I++M+E+
Sbjct: 659 LLMTEVAWTKDELKEALDDVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVED 718
Query: 270 KLQTKLKAKPLLPSQLLRFREIKIPEKSNLVYETQNAVHKSSCIEAYYQCGVQELRDNVL 329
            L      KPLLPSQL+R+RE+++P++   VY+ +N VH +S IE YYQ  +Q   +N+ 
Sbjct: 719 TLIEHAHTKPLLPSQLVRYREVQLPDRGWFVYQQRNEVHNNSGIEIYYQTDMQSTSENMF 778
Query: 330 LELFYPIPDEHT----HYQEQLGYIVVSGIRKSSGVQGLRIIVQSDKHPLFVDSRIEAFL 385
           LELF  I  E        +EQLGYIV SG R+++G+QGLR I+QS+K P +++SR+EAFL
Sbjct: 779 LELFAQIISEPAFNTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSEKPPHYLESRVEAFL 838
Query: 386 AQMKDLISNMPDEEFQSHKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIEVAY 445
             M+  I +M +E FQ H +AL+ +RL+KPKKLS  S+++W EI +QQYNFDR N EVAY
Sbjct: 839 ITMEKSIEDMTEEAFQKHIQALAIRRLDKPKKLSAESAKYWGEIISQQYNFDRDNTEVAY 898
Query: 446 LKSVTKENVLKFY 458
           LK++TKE+++KFY
Sbjct: 899 LKTLTKEDIIKFY 911
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading Enzyme Length = 990 Back     alignment and structure
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Amylin Length = 969 Back     alignment and structure
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution Length = 1019 Back     alignment and structure
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In Complex With Insulin-Like Growth Factor Ii Length = 990 Back     alignment and structure
>pdb|2G47|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In Complex With Amyloid-Beta (1-40) Length = 990 Back     alignment and structure
>pdb|2JG4|A Chain A, Substrate-Free Ide Structure In Its Closed Conformation Length = 990 Back     alignment and structure
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex Length = 990 Back     alignment and structure
>pdb|3P7O|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) E111f Mutant With Two Bound Peptides Length = 1019 Back     alignment and structure
>pdb|3P7L|A Chain A, Rat Insulin Degrading Enzyme (Insulysin) Length = 978 Back     alignment and structure
>pdb|3TUV|A Chain A, Crystal Structure Of Insulysin With Bound Atp Length = 1019 Back     alignment and structure
>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin Length = 939 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query469
3cww_A990 Insulysin, insulin-degrading enzyme, insulinase; A 1e-112
1q2l_A939 Protease III; hydrolase; 2.20A {Escherichia coli s 1e-100
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Length = 990 Back     alignment and structure
 Score =  353 bits (907), Expect = e-112
 Identities = 209/443 (47%), Positives = 301/443 (67%), Gaps = 6/443 (1%)

Query: 22  KSEFDKREYRGLELQNGMKKWTNPSPNEFIATDFSLLPSDPDISPHPTILYNSPLIRAWH 81
           +           +      K+  P+ NEFI T+F +LP +   +P+P ++ ++ + + W 
Sbjct: 473 QEAIPDAVIAKWQNAALNGKFKLPTKNEFIPTNFEILPLEAAATPYPALIKDTAMSKLWF 532

Query: 82  KQDDEYRVPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEYSYDAKLAGLAWDLS 141
           KQDD++ +PK N +FEF SP+AY+DP  +NM +L++ L KD+LNEY+Y A+LAGL++DL 
Sbjct: 533 KQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDSLNEYAYAAELAGLSYDLQ 592

Query: 142 NTKYGMMLGISGYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPY 201
           NT YGM L + GY+ KQ +LL K+++K+A F   ID  R+EIIKE Y R L NF AEQP+
Sbjct: 593 NTIYGMYLSVKGYNDKQPILLKKIIEKMATF--EIDEARFEIIKEAYMRSLNNFRAEQPH 650

Query: 202 QHAIYSISLCLFERAWSKTELLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGL 261
           QHA+Y + L + E AW+K EL E+L  +T  +L  F   LLS++ IEAL+HGN  KQ  L
Sbjct: 651 QHAMYYLRLLMTEVAWTKDELKEALADVTLPRLKAFIPQLLSRLHIEALLHGNITKQAAL 710

Query: 262 SIVKMLEEKLQTKLKAKPLLPSQLLRFREIKIPEKSNLVYETQNAVHKSSCIEAYYQCGV 321
            I++M+E+ L      KPLLPSQL  +RE+++P++   VY+ +N VH +S IE YYQ  +
Sbjct: 711 GIMQMVEDTLIEHAHTKPLLPSQLAAYREVQLPDRGWFVYQQRNEVHNNSGIEIYYQTDM 770

Query: 322 QELRDNVLLELFYPIPDEHTHYQ----EQLGYIVVSGIRKSSGVQGLRIIVQSDKHPLFV 377
           Q   +N+ LELF  I  E         EQLGYIV SG R+++G+QGLR I+QS+K P ++
Sbjct: 771 QSTSENMFLELFAQIISEPAFNTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSEKPPHYL 830

Query: 378 DSRIEAFLAQMKDLISNMPDEEFQSHKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFD 437
           +SR+EAFL  M+  I +M +E FQ H +AL+ +RL+KPKKLS  S+++W EI +QQYNFD
Sbjct: 831 ESRVEAFLITMEKSIEDMTEEAFQKHIQALAIRRLDKPKKLSAESAKYWGEIISQQYNFD 890

Query: 438 RANIEVAYLKSVTKENVLKFYDK 460
           R N EVAYLK++TK +++KFY +
Sbjct: 891 RDNTEVAYLKTLTKADIIKFYKE 913
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 939 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query469
1q2l_A939 Protease III; hydrolase; 2.20A {Escherichia coli s 100.0
3cww_A990 Insulysin, insulin-degrading enzyme, insulinase; A 100.0
3gwb_A434 Peptidase M16 inactive domain family protein; pept 100.0
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 100.0
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 100.0
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 100.0
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 100.0
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 100.0
3eoq_A406 Putative zinc protease; two similar domains of bet 100.0
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 100.0
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 99.98
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 99.97
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 99.97
3go9_A492 Insulinase family protease; IDP00573, structural g 99.96
2fge_A995 Atprep2;, zinc metalloprotease (insulinase family) 99.95
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 99.91
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 99.88
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 99.87
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 99.86
3cx5_B352 Cytochrome B-C1 complex subunit 2, mitochondrial; 99.85
3s5m_A1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 99.69
3ih6_A197 Putative zinc protease; bordetella pertussis toham 99.45
3ih6_A197 Putative zinc protease; bordetella pertussis toham 98.43
3eoq_A406 Putative zinc protease; two similar domains of bet 98.02
3gwb_A434 Peptidase M16 inactive domain family protein; pept 97.89
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 97.88
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 97.85
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 97.8
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 97.8
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 97.75
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 97.74
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 97.67
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 97.66
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 97.66
3go9_A492 Insulinase family protease; IDP00573, structural g 97.17
3cx5_B 352 Cytochrome B-C1 complex subunit 2, mitochondrial; 95.12
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
Probab=100.00  E-value=1.5e-54  Score=474.62  Aligned_cols=434  Identities=20%  Similarity=0.316  Sum_probs=384.4

Q ss_pred             ccccccccccccccccH-HHHHhhcCC---------CCCCCCCCCCCccCCCCCCCCCCCeEEecCCCeeeeeecCCccc
Q psy8002          19 NIVKSEFDKREYRGLEL-QNGMKKWTN---------PSPNEFIATDFSLLPSDPDISPHPTILYNSPLIRAWHKQDDEYR   88 (469)
Q Consensus        19 ~~~~~~~y~~~Y~~~~i-~~~~~~~~~---------P~~N~fip~~f~~~~~~~~~~~~P~~i~~~~~~~lw~~~d~~f~   88 (469)
                      ...+++||+|+|.+.++ ++.++.|..         |.+|+|||++|++.+.+ .....|.++..+||++||+++|+.|+
T Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~n~~~~~~~~~~~~~-~~~~~p~~~~l~ng~~v~~~~~~~f~  520 (939)
T 1q2l_A          442 HNKTAYFVDAPYQVDKISAQTFADWQKKAADIALSLPELNPYIPDDFSLIKSE-KKYDHPELIVDESNLRVVYAPSRYFA  520 (939)
T ss_dssp             CCEECTTTCCEEEEEECCHHHHHHHHHHHHTCCCCCCCCCTTCCCCCCCCCCS-SCCSSCEEEEEETTEEEEEECCSSCT
T ss_pred             CCcccceeCCeeeeeeCCHHHHHHHhccCccccccCCCCCcCCCcCcccccCc-CCCCCCEEEEECCCceEeecCCCccC
Confidence            34579999999999999 999888853         89999999999987643 24567999999999999999999998


Q ss_pred             cc-ceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhhhhhhcccccCceEEEeeeCcceEEEEeecCccHHHHHHHHHH
Q psy8002          89 VP-KLNASFEFISPYAYLDPECTNMTHLFISLFKDALNEYSYDAKLAGLAWDLSNTKYGMMLGISGYSHKQSVLLSKVLD  167 (469)
Q Consensus        89 ~P-k~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~e~~y~a~~ag~~~~~~~~~~g~~i~~~G~s~~l~~ll~~i~~  167 (469)
                      +| ++.|.+.+.+|....++++.+++.|+..++.+++.+..|.+.++|++++++. .+|+.+.++|++++++.+++.+.+
T Consensus       521 ~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll~~g~~~~~~~~~l~G~~~~~~~-~~g~~~~~~g~~~~l~~~l~ll~~  599 (939)
T 1q2l_A          521 SEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQLSNQASVGGISFSTNA-NNGLMVNANGYTQRLPQLFQALLE  599 (939)
T ss_dssp             TSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEE-SSEEEEEEEEESSSHHHHHHHHHH
T ss_pred             CCCcEEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHHHHHhhHHHHcCcEEEEee-CCcEEEEEEcccHhHHHHHHHHHH
Confidence            86 9999999999998889999999999999999999999999999999999999 999999999999999999999999


Q ss_pred             HHccCCCCCChHHHHHHHHHHHHHhccccccChHHHHHHHHHHhccCCCCCHHHHHHHccCCCHHHHHHHHHHHHHhHhh
Q psy8002         168 KLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIYSISLCLFERAWSKTELLESLDGITREKLVEFSHDLLSKMFI  247 (469)
Q Consensus       168 ~l~~~~~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~~l~~~l~~~~~~~~~~~~~l~~it~edl~~f~~~~~~~~~~  247 (469)
                      .+.+|  .+++++|+++|+++++++++...++|+.++...+..+++++.|+..+..++|+++|++++.+|+++++.+.++
T Consensus       600 ~l~~p--~~~~~~f~~~k~~~~~~l~~~~~~~p~~~a~~~l~~~l~~~~~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~  677 (939)
T 1q2l_A          600 GYFSY--TATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPYFSRDERRKILPSITLKEVLAYRDALKSGARP  677 (939)
T ss_dssp             HHHHC--CCCSHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHTTSSSCCCHHHHHHHGGGCCHHHHHHHHHHHHTTCEE
T ss_pred             HHhCC--CCCHHHHHHHHHHHHHHHhhhhhcChHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHHhhheE
Confidence            99999  9999999999999999999955678999999999999988788888999999999999999999999999999


Q ss_pred             heeeecCCChHHHHHHHHHHHHHHhccccCCCCCcccccccceeecCCCCceEEeccCCCCCCeEE-EEEEecCCcChHh
Q psy8002         248 EALIHGNANKQVGLSIVKMLEEKLQTKLKAKPLLPSQLLRFREIKIPEKSNLVYETQNAVHKSSCI-EAYYQCGVQELRD  326 (469)
Q Consensus       248 ~~lv~Gn~~~~~a~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ns~v-~~~~q~~~~~~~~  326 (469)
                      +++|+||++.++++++++.+++.++...   +.+    ...+...++.+..+.+....+ +.++++ .++++.+..+.+.
T Consensus       678 ~~~vvGn~~~~~~~~l~~~~~~~l~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  749 (939)
T 1q2l_A          678 EFMVIGNMTEAQATTLARDVQKQLGADG---SEW----CRNKDVVVDKKQSVIFEKAGN-STDSALAAVFVPTGYDEYTS  749 (939)
T ss_dssp             EEEEEESCCHHHHHHHHHHHHHHHTCCC---SCC----CCCEEECCCSCEEEEEEECCS-SSCEEEEEEEECSSCCHHHH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHHHHccCC---ccc----cccceEEeCCCceEEEecCCC-CCCceeEEEEEecCCCCHHH
Confidence            9999999999999999999888886431   111    011122233343333332323 345666 7788888777888


Q ss_pred             HHHHHHHhhccCCCcc----cccccCcEEEeeeeecCCeeeEEEEEecC-CChhHHHHHHHHHHHHHHHHHcCCCHHHHH
Q psy8002         327 NVLLELFYPIPDEHTH----YQEQLGYIVVSGIRKSSGVQGLRIIVQSD-KHPLFVDSRIEAFLAQMKDLISNMPDEEFQ  401 (469)
Q Consensus       327 ~~~~~ll~~il~~~~f----tk~qLgY~V~s~~~~~~~~~~~~~~vqs~-~~~~~l~~~I~~fl~~~~~~l~~~seeef~  401 (469)
                      .+++.+|++++++++|    |++||||+|+++.....+..|+.|+|||+ ++|+++.++|+.|++++.+.++++|++||+
T Consensus       750 ~~~~~lL~~~~~s~lf~~LRek~gl~Y~v~s~~~~~~~~~g~~~~i~s~~~~p~~~~~~i~~~~~~~~~~~~~~t~~el~  829 (939)
T 1q2l_A          750 SAYSSLLGQIVQPWFYNQLRTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLRAMKPDEFA  829 (939)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHTSCCSSSCEEEEEEEETTEEEEEEEEEESSSCHHHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCceeeeeEeecCCeeEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            8999999999999999    99999999999998888889988899995 599999999999999999888899999999


Q ss_pred             HHHHHHHHHhhcCCCChhhHHHHhHHhhhccccccccchHHHHHHhcCCHHHHHHHHHhhcCC
Q psy8002         402 SHKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIEVAYLKSVTKENVLKFYDKRNYT  464 (469)
Q Consensus       402 ~~k~~l~~~l~~~~~sl~~~~~~~w~~i~~~~~~f~~~~~~~~~l~~lT~edv~~~~~~~~~~  464 (469)
                      ++|+++++++...++++.++++++|.+|..+.+.|++.+++++.|++||++||++++++++.+
T Consensus       830 ~~k~~l~~~~~~~~~s~~~~~~~~w~~i~~~~~~~d~~~~~~~~i~~vT~~dv~~~a~~~l~~  892 (939)
T 1q2l_A          830 QIQQAVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQAVVE  892 (939)
T ss_dssp             HHHHHHHHHHTCCCSSHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTCCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCCChHHHHHHHHhcCCHHHHHHHHHHHhcC
Confidence            999999999999999999999999999998888999999999999999999999999998754
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Back     alignment and structure
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 469
d1q2la2228 d.185.1.1 (A:733-960) Protease III {Escherichia co 5e-36
d1q2la1229 d.185.1.1 (A:504-732) Protease III {Escherichia co 2e-33
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Length = 228 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Protease III
species: Escherichia coli [TaxId: 562]

 Score =  130 bits (329), Expect = 5e-36
 Identities = 39/179 (21%), Positives = 77/179 (43%), Gaps = 5/179 (2%)

Query: 287 RFREIKIPEKSNLVYETQNAVHKSSCIEAYYQCGVQELRDNVLLELFYPIPDEHTHYQ-- 344
           R +++ + +K ++++E       S+    +   G  E   +    L   I     + Q  
Sbjct: 1   RNKDVVVDKKQSVIFEKAGNSTDSALAAVFVPTGYDEYTSSAYSSLLGQIVQPWFYNQLR 60

Query: 345 --EQLGYIVVSGIRKSSGVQGLRIIVQSDKH-PLFVDSRIEAFLAQMKDLISNMPDEEFQ 401
             EQLGY V +         G+  ++QS+   P F+  R +AF    +  +  M  +EF 
Sbjct: 61  TEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLRAMKPDEFA 120

Query: 402 SHKEALSAQRLEKPKKLSGLSSRFWLEITTQQYNFDRANIEVAYLKSVTKENVLKFYDK 460
             ++A+  Q L+ P+ L   +S+   +       FD  +  VA +K +T + +  F+ +
Sbjct: 121 QIQQAVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQ 179
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Length = 229 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query469
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 100.0
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 99.98
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 99.78
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 99.75
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 99.73
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 99.73
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 99.71
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 99.66
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 99.58
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 99.56
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 99.48
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 99.46
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 99.45
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 99.31
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 99.26
d2fgea4257 Presequence protease 1, PREP1 {Thale cress (Arabid 99.26
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 98.64
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 98.48
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 98.45
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 98.41
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 98.25
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 98.12
d2fgea1258 Presequence protease 1, PREP1 {Thale cress (Arabid 97.96
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 97.7
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 97.63
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 97.6
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 97.58
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 97.38
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 96.92
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 96.85
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 96.53
d2fgea3268 Presequence protease 1, PREP1 {Thale cress (Arabid 96.1
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 93.02
d2fgea3268 Presequence protease 1, PREP1 {Thale cress (Arabid 91.87
d3cx5b2150 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 89.21
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Protease III
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.7e-34  Score=259.87  Aligned_cols=223  Identities=21%  Similarity=0.314  Sum_probs=208.3

Q ss_pred             CCCCCCCCccCCCCCCCCCCCeEEecCCCeeeeeecCCccc-ccceEEEEEEECCCCCCCHHHHHHHHHHHHHHHHhhhh
Q psy8002          48 NEFIATDFSLLPSDPDISPHPTILYNSPLIRAWHKQDDEYR-VPKLNASFEFISPYAYLDPECTNMTHLFISLFKDALNE  126 (469)
Q Consensus        48 N~fip~~f~~~~~~~~~~~~P~~i~~~~~~~lw~~~d~~f~-~Pk~~i~~~~~~~~~~~~~~~~~l~~l~~~ll~~~l~e  126 (469)
                      |||||+||++++.+. ...+|+++..++|+++||++|+.|. .|++.+.+.+.+|...+++++.+++.|+..++.+++.+
T Consensus         1 N~~ip~~~~l~~~~~-~~~~P~~~~~~~g~~v~~~~d~~f~~~P~~~i~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~e   79 (229)
T d1q2la1           1 NPYIPDDFSLIKSEK-KYDHPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAGLALDQ   79 (229)
T ss_dssp             CTTCCCCCCCCCCSS-CCSSCEEEEEETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCcccCCCCc-CCCCCEEEEeCCCeEEEEECCCccCCCCEEEEEEEEEecccccChhHHHHHHHHHHHHHhhhhh
Confidence            999999999988654 4568999999999999999999985 79999999999999999999999999999999999999


Q ss_pred             hhhcccccCceEEEeeeCcceEEEEeecCccHHHHHHHHHHHHccCCCCCChHHHHHHHHHHHHHhccccccChHHHHHH
Q psy8002         127 YSYDAKLAGLAWDLSNTKYGMMLGISGYSHKQSVLLSKVLDKLADFSNHIDPKRYEIIKEQYYRGLKNFEAEQPYQHAIY  206 (469)
Q Consensus       127 ~~y~a~~ag~~~~~~~~~~g~~i~~~G~s~~l~~ll~~i~~~l~~~~~~~~~~~f~~~k~~~~~~~~n~~~~~p~~~a~~  206 (469)
                      ..|.|+.+|+++++.. ..|+.+.++||+++++.+++.+++.+.++  .+++++|+++|+++++++++...+.++.++..
T Consensus        80 ~~~~a~~~g~~~~~~~-~~~~~i~~~~~s~~l~~~l~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  156 (229)
T d1q2la1          80 LSNQASVGGISFSTNA-NNGLMVNANGYTQRLPQLFQALLEGYFSY--TATEDQLEQAKSWYNQMMDSAEKGKAFEQAIM  156 (229)
T ss_dssp             HHHHHHHTTEEEEEEE-SSEEEEEEEEESSSHHHHHHHHHHHHHHC--CCCSHHHHHHHHHHHHHHHHHSCSCHHHHHHH
T ss_pred             HHHHHHhccccccccc-cceEEEEEEeehHHHHHHHHHHHHHhcCc--cCcHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence            9999999999999875 57899999999999999999999999999  99999999999999999998677788888888


Q ss_pred             HHHHhccCCCCCHHHHHHHccCCCHHHHHHHHHHHHHhHhhheeeecCCChHHHHHHHHHHHHHHhcc
Q psy8002         207 SISLCLFERAWSKTELLESLDGITREKLVEFSHDLLSKMFIEALIHGNANKQVGLSIVKMLEEKLQTK  274 (469)
Q Consensus       207 ~l~~~l~~~~~~~~~~~~~l~~it~edl~~f~~~~~~~~~~~~lv~Gn~~~~~a~~l~~~~~~~l~~~  274 (469)
                      .+.....+..|+..+.+++|+.++++|+++|+++++++.+++++|+||++.++|+++++.+.+.|+..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~l~~it~~dl~~f~~~~~~~~~~~~~i~Gn~~~~~a~~l~~~~~~~L~~~  224 (229)
T d1q2la1         157 PAQMLSQVPYFSRDERRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGAD  224 (229)
T ss_dssp             HHHHTTSSSCCCHHHHHHHGGGCCHHHHHHHHHHHHTTCEEEEEEEESCCHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHhcccCCCcchhhHHHHhhhhHHHHHHHHHHhcCccCEEEEEEcCCCHHHHHHHHHHHHhhcCCC
Confidence            87777777889999999999999999999999999999999999999999999999999999998753
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure