Psyllid ID: psy8034


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70---
MEPVSGQPAREDLVAQQVLRSAAPVDSGYSIAPHHSGVYPVHEPLYTAWKHIWRVKVTSTEEYPHLRPARLRR
ccccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHccEEEEcccccccccccccc
cccccHHHHHHHHHHHHHHHcccccccccEEcccccccccHHHHHHHHHHHHcccEEEccccccccccccccc
mepvsgqparEDLVAQQVLRsaapvdsgysiaphhsgvypvheplyTAWKHIWRVKVtsteeyphlrparlrr
mepvsgqparEDLVAQQVLRSAAPVDSGYSIAPHHSGVYPVHEPLYTAWKHIWRVKVTsteeyphlrparlrr
MEPVSGQPAREDLVAQQVLRSAAPVDSGYSIAPHHSGVYPVHEPLYTAWKHIWRVKVTSTEEYPHLRPARLRR
************************VDSGYSIAPHHSGVYPVHEPLYTAWKHIWRVKVTS**************
*****GQ*AREDLVAQQVLRSAAPVDSGYSIAPHHSGVYPVHEPLYTAWKHIWRVKVTSTEEYPH********
**********EDLVAQQVLRSAAPVDSGYSIAPHHSGVYPVHEPLYTAWKHIWRVKVTSTEEYPHLRPARLRR
***VSGQPAREDLVAQQVLRSAAPVDSGYSIAPHHSGVYPVHEPLYTAWKHIWRVKVTSTEEYPHLRP*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEPVSGQPAREDLVAQQVLRSAAPVDSGYSIAPHHSGVYPVHEPLYTAWKHIWRVKVTSTEEYPHLRPARLRR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query73 2.2.26 [Sep-21-2011]
Q9V3L1 1048 Bifunctional heparan sulf yes N/A 0.684 0.047 0.84 7e-20
O95803 873 Bifunctional heparan sulf yes N/A 0.753 0.063 0.672 2e-18
Q6GQK9 878 Bifunctional heparan sulf N/A N/A 0.684 0.056 0.76 3e-18
Q5U4X8 878 Bifunctional heparan sulf no N/A 0.684 0.056 0.76 4e-18
Q9EQH7 873 Bifunctional heparan sulf yes N/A 0.753 0.063 0.654 7e-18
P52850 883 Bifunctional heparan sulf no N/A 0.835 0.069 0.639 1e-17
P52849 883 Bifunctional heparan sulf no N/A 0.835 0.069 0.639 1e-17
O97583 884 Bifunctional heparan sulf no N/A 0.835 0.069 0.639 2e-17
Q9H3R1 872 Bifunctional heparan sulf no N/A 0.753 0.063 0.636 3e-17
Q9EQW8 872 Bifunctional heparan sulf no N/A 0.753 0.063 0.636 4e-17
>sp|Q9V3L1|NDST_DROME Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase OS=Drosophila melanogaster GN=sfl PE=1 SV=1 Back     alignment and function desciption
 Score = 95.9 bits (237), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 42/50 (84%), Positives = 44/50 (88%)

Query: 24  PVDSGYSIAPHHSGVYPVHEPLYTAWKHIWRVKVTSTEEYPHLRPARLRR 73
           P DSGYSI+PHHSGVYP HE LY AWK +W VKVTSTEEYPHLRPARLRR
Sbjct: 576 PTDSGYSISPHHSGVYPAHELLYMAWKKVWNVKVTSTEEYPHLRPARLRR 625




Essential bifunctional enzyme that catalyzes both the N-deacetylation and the N-sulfation of glucosamine (GlcNAc) of the glycosaminoglycan in heparan sulfate. Modifies the GlcNAc-GlcA dissacharide repeating sugar backbone to make N-sulfated heparosan, a prerequisite substrate for later modifications in heparin biosynthesis. Plays a role in diffusion of morphogen wingless (wg) via its role in heparan sulfate proteoglycans (HSPGs) biosynthesis, HSPGs being required for movement of wg morphogens. Required for wg signaling during both embryonic and imaginal disk development. Also required for FGF receptor signaling.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 8EC: .EC: 2EC: .EC: -
>sp|O95803|NDST3_HUMAN Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3 OS=Homo sapiens GN=NDST3 PE=2 SV=1 Back     alignment and function description
>sp|Q6GQK9|NDST1_XENLA Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1 OS=Xenopus laevis GN=ndst1 PE=2 SV=1 Back     alignment and function description
>sp|Q5U4X8|NDST1_XENTR Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1 OS=Xenopus tropicalis GN=ndst1 PE=2 SV=1 Back     alignment and function description
>sp|Q9EQH7|NDST3_MOUSE Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3 OS=Mus musculus GN=Ndst3 PE=2 SV=2 Back     alignment and function description
>sp|P52850|NDST2_MOUSE Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2 OS=Mus musculus GN=Ndst2 PE=1 SV=1 Back     alignment and function description
>sp|P52849|NDST2_HUMAN Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2 OS=Homo sapiens GN=NDST2 PE=1 SV=1 Back     alignment and function description
>sp|O97583|NDST2_BOVIN Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2 OS=Bos taurus GN=NDST2 PE=2 SV=1 Back     alignment and function description
>sp|Q9H3R1|NDST4_HUMAN Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 OS=Homo sapiens GN=NDST4 PE=2 SV=1 Back     alignment and function description
>sp|Q9EQW8|NDST4_MOUSE Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 OS=Mus musculus GN=Ndst4 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query73
189237077 896 PREDICTED: similar to heparan sulfate n- 0.684 0.055 0.86 8e-20
242019074 917 heparan sulfate N-deacetylase/N-sulfotra 0.671 0.053 0.877 2e-19
427788687 880 Putative heparan sulfate n-deacetylase/n 0.657 0.054 0.854 7e-19
427780057 900 Putative heparan sulfate n-deacetylase/n 0.657 0.053 0.854 8e-19
158295685 840 AGAP006328-PA [Anopheles gambiae str. PE 0.684 0.059 0.82 1e-18
357617655 846 putative heparan sulfate n-deacetylase/n 0.958 0.082 0.657 2e-18
195167642 995 GL22583 [Drosophila persimilis] gi|19410 0.684 0.050 0.82 2e-18
194752169 1052 GF23539 [Drosophila ananassae] gi|190625 0.753 0.052 0.781 3e-18
17736971 1048 sulfateless, isoform A [Drosophila melan 0.684 0.047 0.84 3e-18
195439794 1080 GK12546 [Drosophila willistoni] gi|19416 0.684 0.046 0.84 3e-18
>gi|189237077|ref|XP_968819.2| PREDICTED: similar to heparan sulfate n-deacetylase/n-sulfotransferase [Tribolium castaneum] gi|270007422|gb|EFA03870.1| hypothetical protein TcasGA2_TC013993 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  100 bits (250), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 43/50 (86%), Positives = 47/50 (94%)

Query: 24  PVDSGYSIAPHHSGVYPVHEPLYTAWKHIWRVKVTSTEEYPHLRPARLRR 73
           PVDSGYS+APHHSGVYPVHE LYTAWK +W ++VTSTEEYPHLRPARLRR
Sbjct: 435 PVDSGYSVAPHHSGVYPVHELLYTAWKKVWNIRVTSTEEYPHLRPARLRR 484




Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242019074|ref|XP_002429991.1| heparan sulfate N-deacetylase/N-sulfotransferase, putative [Pediculus humanus corporis] gi|212515046|gb|EEB17253.1| heparan sulfate N-deacetylase/N-sulfotransferase, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|427788687|gb|JAA59795.1| Putative heparan sulfate n-deacetylase/n-sulfotransfer [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|427780057|gb|JAA55480.1| Putative heparan sulfate n-deacetylase/n-sulfotransfer [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|158295685|ref|XP_316352.3| AGAP006328-PA [Anopheles gambiae str. PEST] gi|157016155|gb|EAA11447.3| AGAP006328-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|357617655|gb|EHJ70912.1| putative heparan sulfate n-deacetylase/n-sulfotransferase [Danaus plexippus] Back     alignment and taxonomy information
>gi|195167642|ref|XP_002024642.1| GL22583 [Drosophila persimilis] gi|194108047|gb|EDW30090.1| GL22583 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|194752169|ref|XP_001958395.1| GF23539 [Drosophila ananassae] gi|190625677|gb|EDV41201.1| GF23539 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|17736971|ref|NP_523946.1| sulfateless, isoform A [Drosophila melanogaster] gi|281365711|ref|NP_001163354.1| sulfateless, isoform B [Drosophila melanogaster] gi|67461214|sp|Q9V3L1.1|NDST_DROME RecName: Full=Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase; AltName: Full=Glucosaminyl N-deacetylase/N-sulfotransferase; AltName: Full=Sulfateless; Includes: RecName: Full=Heparan sulfate N-deacetylase; Includes: RecName: Full=Heparan sulfate N-sulfotransferase gi|5802935|gb|AAD51842.1| heparan sulfate N-deacetylase/N-sulfotransferase homolog [Drosophila melanogaster] gi|7295339|gb|AAF50658.1| sulfateless, isoform A [Drosophila melanogaster] gi|272455063|gb|ACZ94625.1| sulfateless, isoform B [Drosophila melanogaster] gi|349732300|gb|AEQ05538.1| MIP25166p1 [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195439794|ref|XP_002067744.1| GK12546 [Drosophila willistoni] gi|194163829|gb|EDW78730.1| GK12546 [Drosophila willistoni] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query73
FB|FBgn0020251 1048 sfl "sulfateless" [Drosophila 0.684 0.047 0.84 4.6e-19
UNIPROTKB|B4DI67 561 NDST3 "Bifunctional heparan su 0.684 0.089 0.72 1e-17
UNIPROTKB|F1MXP6522 NDST3 "Uncharacterized protein 0.753 0.105 0.654 1.1e-17
UNIPROTKB|O95803 873 NDST3 "Bifunctional heparan su 0.753 0.063 0.672 1.4e-17
MGI|MGI:97040 883 Ndst2 "N-deacetylase/N-sulfotr 0.794 0.065 0.655 1.4e-17
UNIPROTKB|J3KNC8 760 NDST2 "Bifunctional heparan su 0.794 0.076 0.655 1.4e-17
UNIPROTKB|E1BQI7 877 NDST1 "Uncharacterized protein 0.684 0.057 0.74 1.8e-17
UNIPROTKB|A8E4L2 883 NDST2 "NDST2 protein" [Bos tau 0.794 0.065 0.655 1.8e-17
UNIPROTKB|E2RBI5 883 NDST2 "Uncharacterized protein 0.794 0.065 0.655 1.8e-17
UNIPROTKB|P52849 883 NDST2 "Bifunctional heparan su 0.794 0.065 0.655 1.8e-17
FB|FBgn0020251 sfl "sulfateless" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 241 (89.9 bits), Expect = 4.6e-19, P = 4.6e-19
 Identities = 42/50 (84%), Positives = 44/50 (88%)

Query:    24 PVDSGYSIAPHHSGVYPVHEPLYTAWKHIWRVKVTSTEEYPHLRPARLRR 73
             P DSGYSI+PHHSGVYP HE LY AWK +W VKVTSTEEYPHLRPARLRR
Sbjct:   576 PTDSGYSISPHHSGVYPAHELLYMAWKKVWNVKVTSTEEYPHLRPARLRR 625




GO:0007367 "segment polarity determination" evidence=IMP
GO:0015016 "[heparan sulfate
GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=IGI;IMP;TAS
GO:0007427 "epithelial cell migration, open tracheal system" evidence=IGI;IMP;TAS
GO:0007509 "mesoderm migration involved in gastrulation" evidence=IMP;TAS
GO:0016055 "Wnt receptor signaling pathway" evidence=IMP
GO:0015014 "heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process" evidence=IMP;NAS
GO:0006024 "glycosaminoglycan biosynthetic process" evidence=IMP
GO:0006790 "sulfur compound metabolic process" evidence=IMP
GO:0015012 "heparan sulfate proteoglycan biosynthetic process" evidence=NAS;TAS
GO:0007166 "cell surface receptor signaling pathway" evidence=NAS
GO:0007507 "heart development" evidence=NAS
GO:0007428 "primary branching, open tracheal system" evidence=TAS
GO:0016787 "hydrolase activity" evidence=IEA
GO:0005622 "intracellular" evidence=IC
GO:0048488 "synaptic vesicle endocytosis" evidence=IMP
GO:0048312 "intracellular distribution of mitochondria" evidence=IMP
GO:0008587 "imaginal disc-derived wing margin morphogenesis" evidence=IMP
GO:0007474 "imaginal disc-derived wing vein specification" evidence=IMP
GO:0090097 "regulation of decapentaplegic signaling pathway" evidence=IMP
GO:0045570 "regulation of imaginal disc growth" evidence=IMP
GO:0060828 "regulation of canonical Wnt receptor signaling pathway" evidence=IMP
GO:0005783 "endoplasmic reticulum" evidence=IDA
GO:0000137 "Golgi cis cisterna" evidence=IDA
UNIPROTKB|B4DI67 NDST3 "Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MXP6 NDST3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O95803 NDST3 "Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:97040 Ndst2 "N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|J3KNC8 NDST2 "Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BQI7 NDST1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A8E4L2 NDST2 "NDST2 protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RBI5 NDST2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P52849 NDST2 "Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q966W3NDST_CAEEL2, ., 8, ., 2, ., -0.52300.84930.0727yesN/A
Q9EQH7NDST3_MOUSE2, ., 8, ., 2, ., -0.65450.75340.0630yesN/A
Q9V3L1NDST_DROME2, ., 8, ., 2, ., -0.840.68490.0477yesN/A
O95803NDST3_HUMAN2, ., 8, ., 2, ., -0.67270.75340.0630yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query73
pfam12062487 pfam12062, HSNSD, heparan sulfate-N-deacetylase 9e-30
>gnl|CDD|192929 pfam12062, HSNSD, heparan sulfate-N-deacetylase Back     alignment and domain information
 Score =  108 bits (271), Expect = 9e-30
 Identities = 38/50 (76%), Positives = 43/50 (86%)

Query: 24  PVDSGYSIAPHHSGVYPVHEPLYTAWKHIWRVKVTSTEEYPHLRPARLRR 73
           P D GY++APHHSGVYPVHE LY AWK +W +KVTSTEEYPHL+PAR RR
Sbjct: 394 PTDYGYAVAPHHSGVYPVHEQLYEAWKKVWNIKVTSTEEYPHLKPARYRR 443


This family of proteins is are heparan sulfate N-deacetylase enzymes. This protein is found in eukaryotes. This proteinenzyme is often found associated with pfam00685. Length = 487

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 73
PF12062487 HSNSD: heparan sulfate-N-deacetylase; InterPro: IP 100.0
KOG3703|consensus 873 100.0
>PF12062 HSNSD: heparan sulfate-N-deacetylase; InterPro: IPR021930 This family of proteins is are heparan sulphate N-deacetylase enzymes Back     alignment and domain information
Probab=100.00  E-value=8.8e-39  Score=254.66  Aligned_cols=71  Identities=59%  Similarity=0.986  Sum_probs=69.2

Q ss_pred             CccchhhHHHHHHHHHHhcCCCCCCCceeeccccceecccHHHHHHHHHHhccccccceecCCCCccccCC
Q psy8034           3 PVSGQPAREDLVAQQVLRSAAPVDSGYSIAPHHSGVYPVHEPLYTAWKHIWRVKVTSTEEYPHLRPARLRR   73 (73)
Q Consensus         3 ~~~~l~~~M~lNk~FA~~h~ip~~~~yaVaphhsGvYpvh~~ly~aWk~vw~i~vTsteeyPhlrpa~~rr   73 (73)
                      -.|.|+++|+|||+||++|+||++++||||||||||||||+|||+|||+||||+||||||||||||||+||
T Consensus       373 n~s~L~~~m~lNk~Fa~~~~ip~~~~yaVaphhsgvypvh~~ly~awk~vw~i~vTstEeYphl~pa~~rr  443 (487)
T PF12062_consen  373 NQSVLAEQMILNKQFAKEHGIPTDMGYAVAPHHSGVYPVHEQLYEAWKKVWNIKVTSTEEYPHLRPARYRR  443 (487)
T ss_pred             cHHHHHHHHHHHHHhhhhccCCCCCcceEecccCceechhHHHHHHHHHHHccccccceeccccccchhhc
Confidence            36899999999999999999999999999999999999999999999999999999999999999999987



This protein is found in eukaryotes. This enzyme is often found associated with PF00685 from PFAM. ; GO: 0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity, 0016787 hydrolase activity

>KOG3703|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00