Psyllid ID: psy8045

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-----
Protein Sequence
MYRFYSIEIQAVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPVIPDWVLDYWHPLERAQYPEYFKRREERKKEFLVWWEKQYGKPSSEGHGH
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHcccHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MYRFYSIEIQAVLLRARfdkhkdenDLVKIRALLAEGEkelfdtthpspikfptspggvayerepvipdwvldywhpleraqypEYFKRREERKKEFLVWWEKqygkpsseghgh
Flexible Loop (DISEMBL)
MYRFYSIEIQAVLLrarfdkhkdenDLVKIRALLAEGEkelfdtthpspikfptspggvaYEREPVIPDWVLDYWHPLERAQYPEYFKRREERKKEFLVWWEkqygkpsseghgh
Low Complexity Region (SEG)
MYRFYSIEIQAVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPVIPDWVLDYWHPLERAQYPEYFkrreerkkeFLVWWEKQYGKPSSEGHGH
Disordered region (IsUnstruct)
**RFYSIEIQAVLLRARFDKHKDENDLVKIRALLAEGEKELFDT*******F***PGGVAYEREPVIPDWVLDYWHPLERAQYPEYFKRREERKKEFLVWWEKQ***********
Disordered Region (DISOPRED)
MYRFYSIEIQAVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPVIPDWVLDYWHPLERAQYPEYFKRREERKKEFLVWW**************
Disordered Region (DISEMBL)
MYRFYSIEIQAVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPVIPDWVLDYWHPLERAQYPEYFKRREERKKEFLVWWEKQY**********
Disordered Region (DISPRO)
MYRFYSIEIQAVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPVIPDWVLDYWHPLERAQYPEYFKRREERKKEFLVWWEKQYG*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYRFYSIEIQAVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPVIPDWVLDYWHPLERAQYPEYFKRREERKKEFLVWWEKQYGKPSSEGHGH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	115	2.2.26 [Sep-21-2011]
Q02369	179	NADH dehydrogenase [ubiqu	yes	N/A	0.852	0.547	0.495	4e-21
Q9CQJ8	179	NADH dehydrogenase [ubiqu	yes	N/A	0.852	0.547	0.447	5e-21
Q0MQE8	179	NADH dehydrogenase [ubiqu	yes	N/A	0.817	0.525	0.489	8e-20
Q0MQE9	179	NADH dehydrogenase [ubiqu	N/A	N/A	0.817	0.525	0.489	1e-19
Q9Y6M9	179	NADH dehydrogenase [ubiqu	yes	N/A	0.817	0.525	0.489	1e-19
Q0MQF0	179	NADH dehydrogenase [ubiqu	yes	N/A	0.817	0.525	0.489	2e-19

>sp|Q02369|NDUB9_BOVIN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Bos taurus GN=NDUFB9 PE=1 SV=2

 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 52/105 (49%), Positives = 68/105 (64%), Gaps = 7/105 (6%)

Query: 2   YRFYSIEIQAVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAY 61
           YR++     A LLRARFD+HK+E D+VK   LL E E+E +   HP P  FP SPGG +Y
Sbjct: 37  YRYF-----ACLLRARFDEHKNEKDMVKATQLLREAEEEFWHGQHPQPYIFPESPGGTSY 91

Query: 62  EREPV--IPDWVLDYWHPLERAQYPEYFKRREERKKEFLVWWEKQ 104
           ER     +P+W LD WHP E+A YP+YF +RE+ KK     WE++
Sbjct: 92  ERYECYKVPEWCLDDWHPSEKAMYPDYFAKREQWKKLRRESWERE 136

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
Bos taurus (taxid: 9913)

>sp|Q9CQJ8|NDUB9_MOUSE NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Mus musculus GN=Ndufb9 PE=1 SV=3

 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 70/105 (66%), Gaps = 7/105 (6%)

Query: 2   YRFYSIEIQAVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAY 61
           YR++     A L+RARF++HK+E D+++   LL E E+E +   HP P  FP SPGG ++
Sbjct: 37  YRYF-----ACLMRARFEEHKNEKDMMRATQLLREAEEEFWQNQHPQPYIFPDSPGGTSF 91

Query: 62  EREPV--IPDWVLDYWHPLERAQYPEYFKRREERKKEFLVWWEKQ 104
           ER     +P+W LDYWHP E+A YP+YF +RE+ KK  +  W+++
Sbjct: 92  ERYECYKVPEWCLDYWHPSEKAMYPDYFSKREQWKKLRMESWDRE 136

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Mus musculus (taxid: 10090)

>sp|Q0MQE8|NDUB9_PONAB NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Pongo abelii GN=NDUFB9 PE=2 SV=3

 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 64/96 (66%), Gaps = 2/96 (2%)

Query: 11  AVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPV--IP 68
           A L+RARF++HK+E D+V+   LL E E+E +   HP P  FP SPGG +YER     +P
Sbjct: 41  ACLMRARFEEHKNEKDMVRATQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYERYDCYKVP 100

Query: 69  DWVLDYWHPLERAQYPEYFKRREERKKEFLVWWEKQ 104
           +W LD WHP E+A YP+YF +RE+ KK     WE++
Sbjct: 101 EWCLDDWHPSEKAMYPDYFAKREQWKKLQRESWERE 136

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo abelii (taxid: 9601)

>sp|Q0MQE9|NDUB9_GORGO NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Gorilla gorilla gorilla GN=NDUFB9 PE=2 SV=3

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 63/96 (65%), Gaps = 2/96 (2%)

Query: 11  AVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPV--IP 68
           A L+RARF++HK+E D+ K   LL E E+E +   HP P  FP SPGG +YER     +P
Sbjct: 41  ACLMRARFEEHKNEKDMAKATQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYERYDCYKVP 100

Query: 69  DWVLDYWHPLERAQYPEYFKRREERKKEFLVWWEKQ 104
           +W LD WHP E+A YP+YF +RE+ KK     WE++
Sbjct: 101 EWCLDDWHPSEKAMYPDYFAKREQWKKLRRESWERE 136

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gorilla gorilla gorilla (taxid: 9595)

>sp|Q9Y6M9|NDUB9_HUMAN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Homo sapiens GN=NDUFB9 PE=1 SV=3

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 63/96 (65%), Gaps = 2/96 (2%)

Query: 11  AVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPV--IP 68
           A L+RARF++HK+E D+ K   LL E E+E +   HP P  FP SPGG +YER     +P
Sbjct: 41  ACLMRARFEEHKNEKDMAKATQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYERYDCYKVP 100

Query: 69  DWVLDYWHPLERAQYPEYFKRREERKKEFLVWWEKQ 104
           +W LD WHP E+A YP+YF +RE+ KK     WE++
Sbjct: 101 EWCLDDWHPSEKAMYPDYFAKREQWKKLRRESWERE 136

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Homo sapiens (taxid: 9606)

>sp|Q0MQF0|NDUB9_PANTR NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Pan troglodytes GN=NDUFB9 PE=2 SV=3

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 63/96 (65%), Gaps = 2/96 (2%)

Query: 11  AVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPV--IP 68
           A L+RARF++HK+E D+ K   LL E E+E +   HP P  FP SPGG +YER     +P
Sbjct: 41  ACLMRARFEEHKNEKDMAKATQLLKEAEEEFWYRQHPQPYIFPDSPGGTSYERYDCYKVP 100

Query: 69  DWVLDYWHPLERAQYPEYFKRREERKKEFLVWWEKQ 104
           +W LD WHP E+A YP+YF +RE+ KK     WE++
Sbjct: 101 EWCLDDWHPSEKAMYPDYFAKREKWKKLRRESWERE 136

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed to be not involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pan troglodytes (taxid: 9598)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
157167424	146	NADH:ubiquinone dehydrogenase, putative	0.921	0.726	0.691	9e-36
312377738	145	hypothetical protein AND_27557 [Anophele	0.921	0.731	0.632	1e-34
119114007	146	AGAP009865-PA [Anopheles gambiae str. PE	0.886	0.698	0.647	2e-34
195115164	144	GI14070 [Drosophila mojavensis] gi|19391	0.913	0.729	0.603	2e-31
195398127	144	GJ18263 [Drosophila virilis] gi|19414133	0.913	0.729	0.622	3e-31
357620437	146	hypothetical protein KGM_18901 [Danaus p	0.921	0.726	0.641	4e-31
389609907	144	NADH:ubiquinone dehydrogenase [Papilio x	0.921	0.736	0.632	7e-31
195434262	144	GK14843 [Drosophila willistoni] gi|19416	0.913	0.729	0.622	2e-30
195472597	144	GE11677 [Drosophila yakuba] gi|38048551|	0.913	0.729	0.622	3e-30
346472605	145	hypothetical protein [Amblyomma maculatu	0.930	0.737	0.611	6e-30

>gi|157167424|ref|XP_001660686.1| NADH:ubiquinone dehydrogenase, putative [Aedes aegypti] gi|108873582|gb|EAT37807.1| AAEL010230-PA [Aedes aegypti]

 Score =  154 bits (388), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 74/107 (69%), Positives = 87/107 (81%), Gaps = 1/107 (0%)

Query: 10  QAVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPVIPD 69
           QAVL+R RFDKHK E D  KI  LLA+GE+ELF+T H  P KFP SPGGVA+ERE + PD
Sbjct: 39  QAVLMRERFDKHKKERDPAKIAQLLADGERELFETQHFQPKKFPMSPGGVAFEREVIPPD 98

Query: 70  WVLDYWHPLERAQYPEYFKRREERKKEFLVWWEKQYGKPS-SEGHGH 115
           WVLDYWHPLE+AQ+PEYF RRE+RK+E++ WWEKQYGK S +EG  H
Sbjct: 99  WVLDYWHPLEKAQFPEYFARREKRKEEYVTWWEKQYGKTSATEGSHH 145

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312377738|gb|EFR24496.1| hypothetical protein AND_27557 [Anopheles darlingi]

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 67/106 (63%), Positives = 83/106 (78%)

Query: 10  QAVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPVIPD 69
            A ++RARFD+HK END  K+  L+A+ EKELF+  H  P KFP SPGGVA+ERE + PD
Sbjct: 39  HATIMRARFDQHKTENDPAKVAQLVADAEKELFEKQHYQPKKFPMSPGGVAFEREVIPPD 98

Query: 70  WVLDYWHPLERAQYPEYFKRREERKKEFLVWWEKQYGKPSSEGHGH 115
           WVLDYWHPLE+A +PEYF RRE+RK+E++VWWEKQYGK S+    H
Sbjct: 99  WVLDYWHPLEKAHFPEYFARREKRKQEYIVWWEKQYGKSSASDSSH 144

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|119114007|ref|XP_318983.3| AGAP009865-PA [Anopheles gambiae str. PEST] gi|116118209|gb|EAA14441.3| AGAP009865-PA [Anopheles gambiae str. PEST]

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 85/102 (83%)

Query: 10  QAVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPVIPD 69
           QA L+RARFD+H++E D  K+  L+A+GE+ELF+  H  P KFP SPGGVA+ERE + PD
Sbjct: 39  QATLMRARFDQHRNEKDPAKVAQLVADGERELFEKQHYQPKKFPMSPGGVAFEREVIPPD 98

Query: 70  WVLDYWHPLERAQYPEYFKRREERKKEFLVWWEKQYGKPSSE 111
           WVLDYWHPLE+AQ+P+YF RRE+RK+E++VWWEKQYGK S+ 
Sbjct: 99  WVLDYWHPLEKAQFPDYFARREKRKEEYVVWWEKQYGKSSAN 140

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195115164|ref|XP_002002134.1| GI14070 [Drosophila mojavensis] gi|193912709|gb|EDW11576.1| GI14070 [Drosophila mojavensis]

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/106 (60%), Positives = 82/106 (77%), Gaps = 1/106 (0%)

Query: 10  QAVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPVIPD 69
           +AV +RARFD++K++ D+ +   LLA G+KELF+  H  P  F  SPGG A+ERE ++PD
Sbjct: 39  RAVQMRARFDENKNK-DVAEGMRLLASGQKELFENKHFQPRNFANSPGGCAFEREVILPD 97

Query: 70  WVLDYWHPLERAQYPEYFKRREERKKEFLVWWEKQYGKPSSEGHGH 115
           WVLDYWHPLE+AQYPEYF +RE+RKKE++ WWEKQYGKP     GH
Sbjct: 98  WVLDYWHPLEKAQYPEYFAKREQRKKEYVAWWEKQYGKPDPSDLGH 143

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195398127|ref|XP_002057676.1| GJ18263 [Drosophila virilis] gi|194141330|gb|EDW57749.1| GJ18263 [Drosophila virilis]

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 66/106 (62%), Positives = 83/106 (78%), Gaps = 1/106 (0%)

Query: 10  QAVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPVIPD 69
           +AV +RARFD+++++ DL +   LLA G+KELF+T H  P  F  S GG AYERE + PD
Sbjct: 39  RAVQMRARFDENRNK-DLAEGMRLLACGQKELFETKHYQPRNFANSAGGCAYEREVIPPD 97

Query: 70  WVLDYWHPLERAQYPEYFKRREERKKEFLVWWEKQYGKPSSEGHGH 115
           W+LDYWHPLE+AQYPEYF +RE+RKKEF+VWWEKQYGKP  +  GH
Sbjct: 98  WLLDYWHPLEKAQYPEYFAKREQRKKEFVVWWEKQYGKPDPKDLGH 143

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357620437|gb|EHJ72631.1| hypothetical protein KGM_18901 [Danaus plexippus]

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 68/106 (64%), Positives = 77/106 (72%)

Query: 10  QAVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPVIPD 69
           QAVL+R RFDK+    D  K   LL EGE+ELF   HP P KFPTSPGGVA+ER    PD
Sbjct: 40  QAVLMRERFDKNAKIPDFRKAVKLLEEGEQELFLNQHPLPKKFPTSPGGVAHERVVTPPD 99

Query: 70  WVLDYWHPLERAQYPEYFKRREERKKEFLVWWEKQYGKPSSEGHGH 115
           WVLDYWHPLE+A YPEYFK+RE RKKEF+  WEK+YGKP  +   H
Sbjct: 100 WVLDYWHPLEKAHYPEYFKKRELRKKEFIAMWEKEYGKPDPKDQNH 145

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389609907|dbj|BAM18565.1| NADH:ubiquinone dehydrogenase [Papilio xuthus]

 Score =  137 bits (345), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 67/106 (63%), Positives = 78/106 (73%)

Query: 10  QAVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPVIPD 69
           QAVL R +FDK  +E D  K   +L +GE+ELF T HP P KF  SPGGVAYER    PD
Sbjct: 39  QAVLCREKFDKILNEKDARKAAEMLKQGEEELFLTQHPIPKKFAKSPGGVAYERVVTPPD 98

Query: 70  WVLDYWHPLERAQYPEYFKRREERKKEFLVWWEKQYGKPSSEGHGH 115
           WVLDYWHPLE+AQYPEYFK+RE+RKKEF+  WEK+YGKP  +   H
Sbjct: 99  WVLDYWHPLEKAQYPEYFKKREQRKKEFIAMWEKEYGKPDPKDTHH 144

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195434262|ref|XP_002065122.1| GK14843 [Drosophila willistoni] gi|194161207|gb|EDW76108.1| GK14843 [Drosophila willistoni]

 Score =  136 bits (342), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/106 (62%), Positives = 83/106 (78%), Gaps = 1/106 (0%)

Query: 10  QAVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPVIPD 69
           +AV LRARFD++++++    IR LLA G+KELF+T H  P  F  S GG A+ERE + PD
Sbjct: 39  RAVQLRARFDENRNKDLGEGIR-LLACGQKELFETKHFQPKNFANSAGGCAFEREVIPPD 97

Query: 70  WVLDYWHPLERAQYPEYFKRREERKKEFLVWWEKQYGKPSSEGHGH 115
           W+LDYWHPLE+AQYPEYF +RE+RKKEF+VWWEKQYGKP  +  GH
Sbjct: 98  WLLDYWHPLEKAQYPEYFAKREQRKKEFVVWWEKQYGKPDPKDLGH 143

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195472597|ref|XP_002088586.1| GE11677 [Drosophila yakuba] gi|38048551|gb|AAR10178.1| similar to Drosophila melanogaster CG9306, partial [Drosophila yakuba] gi|194174687|gb|EDW88298.1| GE11677 [Drosophila yakuba]

 Score =  135 bits (340), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 66/106 (62%), Positives = 81/106 (76%), Gaps = 1/106 (0%)

Query: 10  QAVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPVIPD 69
           +AV LRARFD++K ++    IR LLA G++ELF+T H  P  F  S GG A+ERE + PD
Sbjct: 39  RAVQLRARFDENKSKDLGEGIR-LLACGQRELFETKHFQPRNFANSAGGCAFEREVIPPD 97

Query: 70  WVLDYWHPLERAQYPEYFKRREERKKEFLVWWEKQYGKPSSEGHGH 115
           WVLDYWHPLE+AQYPEYF +RE+RKKEF+ WWEKQYGKP  +  GH
Sbjct: 98  WVLDYWHPLEKAQYPEYFAKREQRKKEFVTWWEKQYGKPDPKDLGH 143

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346472605|gb|AEO36147.1| hypothetical protein [Amblyomma maculatum]

 Score =  134 bits (337), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 66/108 (61%), Positives = 81/108 (75%), Gaps = 1/108 (0%)

Query: 9   IQAVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPVIP 68
           I AV LR RF+ ++   DL   + LL +GE+ELF   HP P+ +P SP GVAY RE ++P
Sbjct: 38  IGAVKLRQRFEMYRHIKDLRIAKELLDQGEEELFQKDHPYPLHYPLSPQGVAYGREEIVP 97

Query: 69  DWVLDYWHPLERAQYPEYFKRREERKKEFLVWWEKQYGKPSSE-GHGH 115
           DWVLDYWHPLE+AQYPEYF RRE+RKKE++  WEKQYGKP+ E GH H
Sbjct: 98  DWVLDYWHPLEKAQYPEYFARREQRKKEYVENWEKQYGKPTPEAGHHH 145

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
FB|FBgn0032511	144	CG9306 [Drosophila melanogaste	0.913	0.729	0.556	5e-28
UNIPROTKB|F1NPF3	181	NDUFB9 "Uncharacterized protei	0.852	0.541	0.466	8e-21
UNIPROTKB|Q02369	179	NDUFB9 "NADH dehydrogenase [ub	0.852	0.547	0.457	1.7e-20
RGD|1307114	179	Ndufb9 "NADH dehydrogenase (ub	0.817	0.525	0.437	2.1e-20
MGI|MGI:1913468	179	Ndufb9 "NADH dehydrogenase (ub	0.852	0.547	0.409	2.7e-20
UNIPROTKB|F1PKB6	179	NDUFB9 "Uncharacterized protei	0.939	0.603	0.413	9.2e-20
UNIPROTKB|F1RRP9	180	NDUFB9 "Uncharacterized protei	0.852	0.544	0.438	9.2e-20
UNIPROTKB|E7EWZ0	178	NDUFB9 "NADH dehydrogenase [ub	0.852	0.550	0.428	2.5e-19
UNIPROTKB|E9PF49	221	NDUFB9 "NADH dehydrogenase [ub	0.852	0.443	0.428	2.5e-19
UNIPROTKB|Q9Y6M9	179	NDUFB9 "NADH dehydrogenase [ub	0.852	0.547	0.428	2.5e-19

FB|FBgn0032511 CG9306 [Drosophila melanogaster (taxid:7227)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 59/106 (55%), Positives = 73/106 (68%)

Query:    10 QAVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPVIPD 69
             +AV LRARFD+++ + DL +   LLA G++ELF+T H  P  F  S GG A+ERE + PD
Sbjct:    39 RAVQLRARFDENRSK-DLGEGIRLLACGQRELFETRHFQPRNFANSAGGCAFEREVIPPD 97

Query:    70 WVLDYWHPLERAQYPEYFXXXXXXXXXFLVWWEKQYGKPSSEGHGH 115
             WVLDYWHPLE+AQYPEYF         F+ WWEKQYGKP  +  GH
Sbjct:    98 WVLDYWHPLEKAQYPEYFAKREQRKKEFVTWWEKQYGKPDPKDLGH 143

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=ISS

UNIPROTKB|F1NPF3 NDUFB9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 49/105 (46%), Positives = 62/105 (59%)

Query:     2 YRFYSIEIQAVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAY 61
             YR++     AVLLR RFDK+KD  D+VK   LL  GE+E +   HP P  FP SPGG +Y
Sbjct:    39 YRYF-----AVLLRDRFDKNKDVKDMVKATELLRAGEEEFWANQHPQPYIFPDSPGGTSY 93

Query:    62 EREP--VIPDWVLDYWHPLERAQYPEYFXXXXXXXXXFLVWWEKQ 104
             ER     +P+W LDYWHP E+A YP+YF             W+K+
Sbjct:    94 ERYEWYKLPEWCLDYWHPSEKAMYPDYFAKREQWKKLQRESWQKE 138

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

UNIPROTKB|Q02369 NDUFB9 "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9" [Bos taurus (taxid:9913)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 48/105 (45%), Positives = 62/105 (59%)

Query:     2 YRFYSIEIQAVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAY 61
             YR++     A LLRARFD+HK+E D+VK   LL E E+E +   HP P  FP SPGG +Y
Sbjct:    37 YRYF-----ACLLRARFDEHKNEKDMVKATQLLREAEEEFWHGQHPQPYIFPESPGGTSY 91

Query:    62 EREPV--IPDWVLDYWHPLERAQYPEYFXXXXXXXXXFLVWWEKQ 104
             ER     +P+W LD WHP E+A YP+YF             WE++
Sbjct:    92 ERYECYKVPEWCLDDWHPSEKAMYPDYFAKREQWKKLRRESWERE 136

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

RGD|1307114 Ndufb9 "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9" [Rattus norvegicus (taxid:10116)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 42/96 (43%), Positives = 60/96 (62%)

Query:    11 AVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPV--IP 68
             A L+RARF++HK+E D++K   LL + E+E +   HP P  FP SPGG +YER     +P
Sbjct:    41 ACLMRARFEEHKNEKDMMKATQLLRQAEEEFWQNQHPQPYIFPDSPGGTSYERYECYKVP 100

Query:    69 DWVLDYWHPLERAQYPEYFXXXXXXXXXFLVWWEKQ 104
             +W LDYWHP E+A YP+YF          +  W+++
Sbjct:   101 EWCLDYWHPSEKAVYPDYFSKREQWKKLRMESWDRE 136

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1913468 Ndufb9 "NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9" [Mus musculus (taxid:10090)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 43/105 (40%), Positives = 64/105 (60%)

Query:     2 YRFYSIEIQAVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAY 61
             YR++     A L+RARF++HK+E D+++   LL E E+E +   HP P  FP SPGG ++
Sbjct:    37 YRYF-----ACLMRARFEEHKNEKDMMRATQLLREAEEEFWQNQHPQPYIFPDSPGGTSF 91

Query:    62 EREPV--IPDWVLDYWHPLERAQYPEYFXXXXXXXXXFLVWWEKQ 104
             ER     +P+W LDYWHP E+A YP+YF          +  W+++
Sbjct:    92 ERYECYKVPEWCLDYWHPSEKAMYPDYFSKREQWKKLRMESWDRE 136

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

UNIPROTKB|F1PKB6 NDUFB9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 48/116 (41%), Positives = 65/116 (56%)

Query:     2 YRFYSIEIQAVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAY 61
             YR++     A L+RARF++HK+E D+VK   LL   E+E +   HP P  FP SPGG +Y
Sbjct:    37 YRYF-----ACLMRARFEEHKNEKDMVKATQLLRAAEEEFWHNQHPQPYIFPESPGGTSY 91

Query:    62 EREPV--IPDWVLDYWHPLERAQYPEYFXXXXXXXXXFLVWWEKQYGKPSSEG-HG 114
             ER     +P+W LD WHP E+A YP+YF             WE++  +   E  HG
Sbjct:    92 ERYECYKVPEWCLDDWHPSEKAMYPDYFAKREQWKKLQRESWEREVKQLQEETPHG 147

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

UNIPROTKB|F1RRP9 NDUFB9 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 46/105 (43%), Positives = 62/105 (59%)

Query:     2 YRFYSIEIQAVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAY 61
             YR++     A L+RARFD+HK+E D+VK   LL + E+E +   HP P  FP SPGG +Y
Sbjct:    38 YRYF-----ACLMRARFDEHKNEKDMVKATQLLRQAEEEFWYGQHPQPYIFPESPGGTSY 92

Query:    62 EREPV--IPDWVLDYWHPLERAQYPEYFXXXXXXXXXFLVWWEKQ 104
             ER     +P+W LD WHP E+A YP+YF             WE++
Sbjct:    93 ERYECYKVPEWCLDDWHPSEKAMYPDYFAKREQWKRLRRESWERE 137

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

UNIPROTKB|E7EWZ0 NDUFB9 "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9" [Homo sapiens (taxid:9606)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 45/105 (42%), Positives = 61/105 (58%)

Query:     2 YRFYSIEIQAVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAY 61
             YR++     A L+RARF++HK+E D+ K   LL E E+E +   HP P  FP SPGG +Y
Sbjct:    37 YRYF-----ACLMRARFEEHKNEKDMAKATQLLKEAEEEFWYRQHPQPYIFPDSPGGTSY 91

Query:    62 EREPV--IPDWVLDYWHPLERAQYPEYFXXXXXXXXXFLVWWEKQ 104
             ER     +P+W LD WHP E+A YP+YF             WE++
Sbjct:    92 ERYDCYKVPEWCLDDWHPSEKAMYPDYFAKREQWKKLRRESWERE 136

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|E9PF49 NDUFB9 "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9" [Homo sapiens (taxid:9606)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 45/105 (42%), Positives = 61/105 (58%)

Query:     2 YRFYSIEIQAVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAY 61
             YR++     A L+RARF++HK+E D+ K   LL E E+E +   HP P  FP SPGG +Y
Sbjct:    37 YRYF-----ACLMRARFEEHKNEKDMAKATQLLKEAEEEFWYRQHPQPYIFPDSPGGTSY 91

Query:    62 EREPV--IPDWVLDYWHPLERAQYPEYFXXXXXXXXXFLVWWEKQ 104
             ER     +P+W LD WHP E+A YP+YF             WE++
Sbjct:    92 ERYDCYKVPEWCLDDWHPSEKAMYPDYFAKREQWKKLRRESWERE 136

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|Q9Y6M9 NDUFB9 "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9" [Homo sapiens (taxid:9606)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 45/105 (42%), Positives = 61/105 (58%)

Query:     2 YRFYSIEIQAVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAY 61
             YR++     A L+RARF++HK+E D+ K   LL E E+E +   HP P  FP SPGG +Y
Sbjct:    37 YRYF-----ACLMRARFEEHKNEKDMAKATQLLKEAEEEFWYRQHPQPYIFPDSPGGTSY 91

Query:    62 EREPV--IPDWVLDYWHPLERAQYPEYFXXXXXXXXXFLVWWEKQ 104
             ER     +P+W LD WHP E+A YP+YF             WE++
Sbjct:    92 ERYDCYKVPEWCLDDWHPSEKAMYPDYFAKREQWKKLRRESWERE 136

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA;NAS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=NAS

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=NAS

GO:0007605 "sensory perception of sound" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	115
pfam05347	59	pfam05347, Complex1_LYR, Complex 1 protein (LYR fa	1e-04
pfam13232	61	pfam13232, Complex1_LYR_1, Complex1_LYR-like	3e-04

>gnl|CDD|203236 pfam05347, Complex1_LYR, Complex 1 protein (LYR family)

 Score = 36.8 bits (86), Expect = 1e-04
 Identities = 14/28 (50%), Positives = 19/28 (67%)

Query: 14 LRARFDKHKDENDLVKIRALLAEGEKEL 41
          +R  F K+K+  D  KI ALL EG+K+L
Sbjct: 30 IRDEFRKNKNLTDPEKIEALLKEGKKQL 57

Proteins in this family have been identified as a component of the higher eukaryotic NADH complex. In Saccharomyces cerevisiae, the Isd11 protein has been shown to play a role in Fe/S cluster biogenesis in mitochondria. We have named this family LYR after a highly conserved tripeptide motif close to the N-terminus of these proteins. Length = 59

>gnl|CDD|221996 pfam13232, Complex1_LYR_1, Complex1_LYR-like

 Score = 36.0 bits (84), Expect = 3e-04
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 13 LLRARFDKHKDENDLVKIRALLAEGEKEL 41
           +R  F K+KD  D  KI  LL EG+K+L
Sbjct: 29 RIRDEFRKNKDLTDPEKIEKLLKEGKKQL 57

This is a family of proteins carrying the LYR motif of family Complex1_LYR, pfam05347, likely to be involved in Fe-S cluster biogenesis in mitochondria. Length = 61

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	115
KOG3466|consensus	157		100.0
PF05347	59	Complex1_LYR: Complex 1 protein (LYR family); Inte	98.0
PF13232	61	Complex1_LYR_1: Complex1_LYR-like	97.51
KOG3801|consensus	94		96.74
KOG3426|consensus	124		95.64

>KOG3466|consensus

Probab=100.00  E-value=4.3e-51  Score=306.42  Aligned_cols=110  Identities=50%  Similarity=0.901  Sum_probs=105.4

Q ss_pred             chHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCcccccCCCCcccccccCCchhhh
Q psy8045           2 YRFYSIEIQAVLLRARFDKHKDENDLVKIRALLAEGEKELFDTTHPSPIKFPTSPGGVAYEREPVIPDWVLDYWHPLERA   81 (115)
Q Consensus         2 ~~rd~~R~~A~~lRarFe~Nk~v~Dp~~~~~Ll~~gE~el~~~~HPdPyi~P~~PGGtkyeRN~ppP~~vlD~Whp~eka   81 (115)
                      ++|+++|++|+.||||||+|++ +|+.++.+||++||+||++++||+|||||+|||||+|+||..||+|+||+|||+|||
T Consensus        32 ~~rn~yRy~ac~~RARFden~~-kD~~k~~~LLa~ge~E~w~~rHpqP~ifp~spGGssy~R~~~~Pdw~lD~Whpaeka  110 (157)
T KOG3466|consen   32 VHRNIYRYQACIIRARFDENDE-KDVDKAIRLLAEGERELWEWRHPQPYIFPDSPGGSSYEREPCPPDWCLDDWHPAEKA  110 (157)
T ss_pred             hcchHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCccccCCCChHHhhcccChhhhH
Confidence            5899999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCcHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q psy8045          82 QYPEYFKRREERKKEFLVWWEKQYGKPSSEG  112 (115)
Q Consensus        82 ~yp~yF~~Re~~k~e~~~~w~k~~~~~~~~~  112 (115)
                      |||+||++|||||||+..+|+++..+.++++
T Consensus       111 ~yp~YfakreqrKKe~~t~W~r~~Kq~~ee~  141 (157)
T KOG3466|consen  111 QYPDYFAKREQRKKERRTSWEREVKQLQEET  141 (157)
T ss_pred             hhhHHhhhhhHHHHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999997666666655

>PF05347 Complex1_LYR: Complex 1 protein (LYR family); InterPro: IPR008011 This family of short proteins includes proteins from the NADH-ubiquinone oxidoreductase complex I

Probab=98.00  E-value=1.2e-05  Score=50.06  Aligned_cols=33  Identities=39%  Similarity=0.552  Sum_probs=30.5

Q ss_pred             HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhh
Q psy8045          10 QAVLLRARFDKHKDENDLVKIRALLAEGEKELF   42 (115)
Q Consensus        10 ~A~~lRarFe~Nk~v~Dp~~~~~Ll~~gE~el~   42 (115)
                      -...||+.|++|++++||..|..+|..|+..|.
T Consensus        26 ~~~~iR~~Fr~n~~~~d~~~I~~~l~~g~~~l~   58 (59)
T PF05347_consen   26 IRAEIRQEFRKNRNETDPEKIEELLKKGEEELE   58 (59)
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhc
Confidence            357899999999999999999999999999885

The family includes the B14 subunit from bovine NADH-ubiquinone oxidoreductase B14 subunit Q02366 from SWISSPROT, and the B22 subunit from the human enzyme Q9Y6M9 from SWISSPROT. The family has been named LYR after a highly conserved tripeptide motif close to the N terminus of these proteins. Members of this family also found in yeast which do contain this complex. In these organisms they are believed to be be required for iron-sulphur custer biogenesis.

>PF13232 Complex1_LYR_1: Complex1_LYR-like

Probab=97.51  E-value=0.00024  Score=44.92  Aligned_cols=34  Identities=41%  Similarity=0.461  Sum_probs=30.8

Q ss_pred             HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhc
Q psy8045          10 QAVLLRARFDKHKDENDLVKIRALLAEGEKELFD   43 (115)
Q Consensus        10 ~A~~lRarFe~Nk~v~Dp~~~~~Ll~~gE~el~~   43 (115)
                      -...||.+|+.|++++||..++.+|+.|+..|..
T Consensus        26 ~~~~ir~~Fr~~~~~td~~~i~~~l~~~~~~L~~   59 (61)
T PF13232_consen   26 FRRRIRDRFRRNKNVTDPEKIAKLLKEGRKELEL   59 (61)
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            3567999999999999999999999999999864

>KOG3801|consensus

Probab=96.74  E-value=0.0028  Score=45.09  Aligned_cols=35  Identities=26%  Similarity=0.244  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhc
Q psy8045           9 IQAVLLRARFDKHKDENDLVKIRALLAEGEKELFD   43 (115)
Q Consensus         9 ~~A~~lRarFe~Nk~v~Dp~~~~~Ll~~gE~el~~   43 (115)
                      |-+-.+|.-|-+||+++||.+++.|+++|++.|.-
T Consensus        31 Y~~RrtRD~Fr~Nkn~~Dp~e~~~l~~eakk~Lev   65 (94)
T KOG3801|consen   31 YFQRRTRDTFRANKNVCDPAEIKKLYKEAKKQLEV   65 (94)
T ss_pred             HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999863

>KOG3426|consensus

Probab=95.64  E-value=0.012  Score=43.62  Aligned_cols=32  Identities=28%  Similarity=0.354  Sum_probs=29.5

Q ss_pred             HHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhc
Q psy8045          12 VLLRARFDKHKDENDLVKIRALLAEGEKELFD   43 (115)
Q Consensus        12 ~~lRarFe~Nk~v~Dp~~~~~Ll~~gE~el~~   43 (115)
                      ..||++|-+|.||+||+.+..|+-+|-.+|.+
T Consensus        56 ~~ir~qf~kn~hvTD~rViDlLV~kg~~elke   87 (124)
T KOG3426|consen   56 DKIREQFRKNAHVTDPRVIDLLVIKGMEELKE   87 (124)
T ss_pred             HHHHHHHHhcCCcCCchhhhHHHHhhHHHHHH
Confidence            46999999999999999999999999998865

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00